Query gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 318 No_of_seqs 160 out of 776 Neff 8.3 Searched_HMMs 23785 Date Tue May 31 17:32:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780687.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2hp7_A Flagellar motor switch 100.0 1E-35 4.3E-40 251.9 22.9 179 28-212 5-183 (183) 2 1o6a_A Putative flagelar motor 99.7 3.3E-17 1.4E-21 130.6 11.5 82 232-314 13-94 (96) 3 1o9y_A HRCQ2; secretory protei 99.6 2.3E-15 9.5E-20 118.6 11.8 75 232-306 9-83 (84) 4 1xkr_A Chemotaxis protein CHEC 98.8 4.5E-06 1.9E-10 57.6 21.2 179 30-213 7-202 (206) 5 3hm4_A Chemotaxis protein CHEX 97.2 0.009 3.8E-07 36.0 11.5 145 39-201 10-155 (156) 6 3hzh_B Chemotaxis operon prote 97.0 0.018 7.4E-07 34.1 14.5 149 40-201 18-168 (172) 7 3h2d_A CHEC-like superfamily p 96.8 0.026 1.1E-06 33.0 13.4 145 38-201 6-153 (155) 8 1squ_A CHEX protein; alpha-bet 95.5 0.13 5.3E-06 28.5 15.4 113 37-164 4-117 (155) 9 2e63_A KIAA1787 protein; struc 50.7 10 0.00043 16.0 4.0 44 255-298 114-157 (170) 10 3gt2_A Putative uncharacterize 30.0 21 0.0009 13.9 4.5 40 257-303 88-127 (142) 11 1v6z_A Hypothetical protein TT 30.0 21 0.0009 13.9 3.3 103 43-152 20-135 (228) 12 1saw_A Hypothetical protein FL 29.7 22 0.00091 13.9 4.3 36 253-288 177-219 (225) 13 1nr9_A Protein YCGM; structura 24.1 27 0.0011 13.2 3.6 30 252-281 177-213 (223) 14 2z0t_A Putative uncharacterize 23.1 29 0.0012 13.1 1.7 35 225-268 9-43 (109) 15 3biq_A FACT complex subunit SP 23.0 29 0.0012 13.1 3.8 25 178-202 284-308 (467) 16 3ne0_A Resuscitation promoting 22.1 30 0.0012 13.0 2.1 43 256-302 156-198 (214) 17 1hmj_A RPB5, protein (subunit 22.1 30 0.0013 13.0 1.8 21 251-271 41-61 (78) 18 1eik_A RNA polymerase subunit 21.3 28 0.0012 13.2 1.2 19 252-270 44-62 (77) No 1 >2hp7_A Flagellar motor switch protein FLIM; bacterial chemotaxis, flagellar switch complex, signaling protein; 2.00A {Thermotoga maritima} Probab=100.00 E-value=1e-35 Score=251.93 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=170.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEECCCCCCEEEEEECHHHHHHH Q ss_conf 66799999999999999999999986298079986472566799897116886399999736778339999887899999 Q gi|254780687|r 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 (318) Q Consensus 28 ~~~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~~~pl~g~~ll~id~~l~~~l 107 (318) ++...++++.++|+|+|.++..|++++|..++|++ ++++.+|+||++++|.|+++++++++||+|++++.+|++++|++ T Consensus 5 ske~l~~L~~I~e~far~~~~~l~~~lr~~~~v~~-~v~~~~~~ef~~~l~~p~~l~i~~~~pl~g~~ll~i~~~l~~~~ 83 (183) T 2hp7_A 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTM 83 (183) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEE-EEEEEEHHHHHHHSCSSCEEEEEEETTCSSCEEEEECHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEEEEEHHHHHHHCCCCEEEEEEEECCCCCCEEEEECHHHHHHH T ss_conf 35466799999999999999999998688847999-46899899999658887289998604658807999886999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEE Q ss_conf 98872788876666665657989999999999999999999851002732000002443110000124787189999988 Q gi|254780687|r 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 (318) Q Consensus 108 id~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~ 187 (318) ||++|||.|... ++|+||+||.++++++++.++++|.++|+++.++++.+...++ |+++++++.|+|.+++++|+ T Consensus 84 vD~l~GG~g~~~---~~R~lT~iE~~i~~~i~~~~~~~l~~aw~~~~~~~~~~~~~e~--np~~~~i~~~~e~vv~~~f~ 158 (183) T 2hp7_A 84 LDIIMGGPGENP---PNRPPTEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 158 (183) T ss_dssp HHHHHTCC-------CCSCCCHHHHHHHHHHHHHHHHHHHHHTHHHHCCCEEEEEEES--CGGGCCSSCTTSEEEEEEEE T ss_pred HHHHCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CHHHHCCCCCCCEEEEEEEE T ss_conf 999748999988---9987868889999999999999999998533137740334233--86765638999859999999 Q ss_pred EEECCEEEEEEEEEEHHHHHHHHHH Q ss_conf 6667813799998504775256775 Q gi|254780687|r 188 MTIENVASSFVLIIPQETLLKTTLI 212 (318) Q Consensus 188 v~~~~~~g~~~l~lP~~~l~~~~~~ 212 (318) +++|+.+|.+++|+||++++|++++ T Consensus 159 v~~g~~~g~~~i~iP~~~Lepi~~k 183 (183) T 2hp7_A 159 VSWGEFTSFINVCWPFSLLEPLLEK 183 (183) T ss_dssp EEETTEEEEEEEEEEHHHHHHHHHC T ss_pred EEECCCCEEEEEEEHHHHHHHHCCC T ss_conf 9989964299999638841433069 No 2 >1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A Probab=99.73 E-value=3.3e-17 Score=130.63 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=75.8 Q ss_pred HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHH Q ss_conf 99974080079999812343098994579997898257899738999999999999998788978999984258146788 Q gi|254780687|r 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 (318) Q Consensus 232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l 311 (318) .+.++++||+++|+||+++++++|+++|++||||+|+++.+++++++|||+++|+|++|.+|+++||||++.+.++++ + T Consensus 13 l~~l~di~v~l~~~lg~~~l~l~dl~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i~~~~~-~ 91 (96) T 1o6a_A 13 LELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKER-L 91 (96) T ss_dssp HHHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHH-H T ss_pred HHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHH-H T ss_conf 466326608999999510856999846899999991798999789999999999999999999999999984194899-8 Q ss_pred HHH Q ss_conf 887 Q gi|254780687|r 312 KNF 314 (318) Q Consensus 312 ~~~ 314 (318) +++ T Consensus 92 ~~l 94 (96) T 1o6a_A 92 ELL 94 (96) T ss_dssp HHH T ss_pred HHH T ss_conf 764 No 3 >1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1 Probab=99.64 E-value=2.3e-15 Score=118.58 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=71.0 Q ss_pred HHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCC Q ss_conf 999740800799998123430989945799978982578997389999999999999987889789999842581 Q gi|254780687|r 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 (318) Q Consensus 232 ~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~ 306 (318) ...+.++|++++++||+.+|+++|+++|++||||+|+...+++|++++||+++|+|++|.+|+++||||++.+.. T Consensus 9 ~~~l~~i~v~l~~~Lg~~~~~l~el~~L~~Gdvl~L~~~~~~~v~l~v~g~~i~~Gel~~~~~~~av~It~~i~~ 83 (84) T 1o9y_A 9 PPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVTR 83 (84) T ss_dssp --CCTTCEEEEEEEEEEEEEEHHHHHTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEEC-- T ss_pred HHHHHCCCEEEEEEEEEEEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEEECC T ss_conf 457717827999999310868999952899999994777999899999999999999999999999999991007 No 4 >1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase, attractant; 1.75A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 2f9z_A Probab=98.82 E-value=4.5e-06 Score=57.63 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=129.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCE---EEEEEE-CCCCCCEEEEEECHHHHH Q ss_conf 7999999999999999999999862980799864725667998971168863---999997-367783399998878999 Q gi|254780687|r 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF---VFSQAS-LSSWSSNFFIGCSNNLVI 105 (318) Q Consensus 30 ~~~~~~~~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~---~~~i~~-~~pl~g~~ll~id~~l~~ 105 (318) ...++++++..--+...+++|+..++..|++++..++..+..++...++.+. +..... ..++.|..++.++...+. T Consensus 7 ~~~D~l~E~~NIg~G~AAtaLs~ll~~~v~l~vp~v~~~~~~~l~~~~~~~~~~~~~v~~~~~G~~~G~~ll~f~~~~a~ 86 (206) T 1xkr_A 7 RQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVGVKMPVTGDIEGSVLLIMGTTVVK 86 (206) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEECCCEEEEEGGGGGGGSSCTTCEEEEEEEEEEESSCEEEEEEECHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECHHHHH T ss_conf 99999999999988899999999859969998898999709999998468674299999985617646999995899999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHC-------HH-HH-CCCC Q ss_conf 999887278887666666565798999999999999999999985100273200000244311-------00-00-1247 Q gi|254780687|r 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY-------LK-KN-TNRL 176 (318) Q Consensus 106 ~lid~~lGG~g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-------~~-~~-~~~~ 176 (318) .+++.|+|+.+. ...++++.+...+..+.+.+..++-.+|+...+....+..|..... .. .. .... T Consensus 87 ~l~~~l~g~~~~-----~~~~~~e~~~sal~EigNIl~ga~~~~la~~l~~~i~~s~P~~~~d~~~~il~~~~~~~~~~~ 161 (206) T 1xkr_A 87 KILEILTGRAPD-----NLLNLDEFSASALREIGNIMCGTYVSALADFLGFKIDTLPPQLVIDMISAIFAEASIEELEDN 161 (206) T ss_dssp HHHHHHHSCCCS-----CSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCEEEEEEHHHHHHHHHHHHHSSC T ss_pred HHHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHHCCHHHHHHHCCC T ss_conf 999985699988-----755537889999999999999999999999859966467998882460433476776542046 Q ss_pred CCCEEEEEEEEEEE--C--CEEEEEEEEEEHHHHHHHHHHH Q ss_conf 87189999988666--7--8137999985047752567754 Q gi|254780687|r 177 SNEFVTTINMNMTI--E--NVASSFVLIIPQETLLKTTLIS 213 (318) Q Consensus 177 p~e~vi~i~~~v~~--~--~~~g~~~l~lP~~~l~~~~~~~ 213 (318) .++.++++...+.+ . +..|.+.++.....+..+...+ T Consensus 162 ~~~~~l~i~t~~~~~~~~~~i~g~l~llp~~~s~~~L~~~L 202 (206) T 1xkr_A 162 SEDQIVFVETLLKVEEEEEPLTSYMMMIPKPGYLVKIFERM 202 (206) T ss_dssp CCCEEEEEEEEEEETTSSSCEEEEEEEEECTTHHHHHHHTT T ss_pred CCCEEEEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHC T ss_conf 78659999999997620355469999914989999999983 No 5 >3hm4_A Chemotaxis protein CHEX; YP_386777.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.30A {Desulfovibrio desulfuricans subsp} PDB: 3h4y_A* Probab=97.15 E-value=0.009 Score=36.03 Aligned_cols=145 Identities=8% Similarity=0.022 Sum_probs=89.0 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEE-CCCCCCEEEEEECHHHHHHHHHHHHCCCCC Q ss_conf 9999999999999862980799864725667998971168863999997-367783399998878999999887278887 Q gi|254780687|r 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHE 117 (318) Q Consensus 39 ~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~-~~pl~g~~ll~id~~l~~~lid~~lGG~g~ 117 (318) ..-|.......|++.++..+......++.. ..+.+.+.+++. ..+++|..++.++..++..++..|+|.+. T Consensus 10 ~npFi~at~~vl~~m~~~~v~~~~p~~~~~-------~~~~~~v~~~I~~~G~~~G~v~l~~~~~~a~~ia~~m~g~~~- 81 (156) T 3hm4_A 10 AKPFVTATTNVLSTMAGIQPIPGQPYVKKN-------NVAKGDVSAVVGITGHKNGSISVTFTKQCAIAVVKAMLGDDI- 81 (156) T ss_dssp HHHHHHHHHHHHHHHHCCCCEECCCEECCS-------SCEEEEEEEEEEEESSSCEEEEEEECHHHHHHHHHHHHCSSC- T ss_pred EHHHHHHHHHHHHHHHCCCCEECCCEEECC-------CCCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHHHHCCCCC- T ss_conf 289899999999998499746388676256-------677888999999701552899999789999999999739996- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCEEEEE Q ss_conf 66666656579899999999999999999998510027320000024431100001247871899999886667813799 Q gi|254780687|r 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 (318) Q Consensus 118 ~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g~~ 197 (318) .++++.-+..+..+.+.+.......++.. +....+..|.........-....+...+.+.|....|.. .+ T Consensus 82 -------~~~~e~~~da~~E~~N~i~G~~~~~l~~~-g~~~~ls~P~v~~g~~~~i~~~~~~~~~~i~f~~~~G~~--~i 151 (156) T 3hm4_A 82 -------QDIIQDTKDAVGEVTNMISGQARAALSEM-GMTFQGATPSVIMGDGHTISHVTKSPVIAIPFKTNHGEF--TV 151 (156) T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCEECCCEEEEEEEEEEEECCSSCCEEEEEECTTCCE--EE T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCCEEEECCCCEEEECCCCCEEEEEEEECCCEE--EE T ss_conf -------40558999999999999899999999877-983750699289679824540689868999999569759--99 Q ss_pred EEEE Q ss_conf 9985 Q gi|254780687|r 198 VLII 201 (318) Q Consensus 198 ~l~l 201 (318) ++|+ T Consensus 152 ~i~l 155 (156) T 3hm4_A 152 EFCL 155 (156) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9996 No 6 >3hzh_B Chemotaxis operon protein (CHEX); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Probab=97.03 E-value=0.018 Score=34.11 Aligned_cols=149 Identities=6% Similarity=-0.030 Sum_probs=97.7 Q ss_pred HHHHHHHHHHHHHHCCCE-EEEEECCCEEEEHHHHHHCCCCCEEEEEEE-CCCCCCEEEEEECHHHHHHHHHHHHCCCCC Q ss_conf 999999999999862980-799864725667998971168863999997-367783399998878999999887278887 Q gi|254780687|r 40 YLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHE 117 (318) Q Consensus 40 e~~~r~l~~~l~~~~~~~-v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~-~~pl~g~~ll~id~~l~~~lid~~lGG~g~ 117 (318) .-|.......|+++++.. +...-...+... .+.+-+.++.. ...+.|..++.++...+..+++.|+|++.. T Consensus 18 npFi~a~~~vl~~ml~~~~~~~~~~~~~~~~-------~~~~~v~~~Ig~~G~~~G~~~l~~~~~~a~~i~~~m~g~e~~ 90 (172) T 3hzh_B 18 EPFLDAASSVLRDMLLVENIEMGKPGLKSIN-------QKIKGVSVIVGLAGSVEGSIIIDMDIETALFVASKLNFEEYD 90 (172) T ss_dssp HHHHHHHHHHHHHHSCSSCCEECCCBSSCC-----------CCEEEEEEEEESSCEEEEEEECHHHHHHHHHHHHTSCCC T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEECCCC-------CCCCCEEEEEEEEECCCEEEEEEECHHHHHHHHHHHCCCCCC T ss_conf 7889999999999859874345764104556-------778979999997424668999998999999999997599866 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCCCCCCEEEEEEEEEEECCEEEEE Q ss_conf 66666656579899999999999999999998510027320000024431100001247871899999886667813799 Q gi|254780687|r 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 (318) Q Consensus 118 ~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~e~vi~i~~~v~~~~~~g~~ 197 (318) ..+ ..++.+..+..+..+.+.+.......++.. +....+..|..... ....+..++...+.+.|....|+. -.+ T Consensus 91 ~~~---~e~~~e~~~dal~El~NiI~G~~~~~ls~~-g~~i~is~P~vi~g-~~~~i~~~~~~~i~ip~~~~~g~~-~~i 164 (172) T 3hzh_B 91 DFD---DEETKEMVAATLTEVGNIIAGNFVTTLHAK-GFVFDITPPAFIYG-ENMKISNKGSEALIVPFSLPDGKI-IEV 164 (172) T ss_dssp CTT---STTHHHHHHHHHHHHHHHHHHHHHHTTTTS-SSCEEECCCEEECS-CSSCCCCCSSCEEEEEEECSSSCE-EEE T ss_pred CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEEECCEEEEC-CCEEEECCCCCEEEEEEEECCCCE-EEE T ss_conf 677---531008899999999999999999999977-98387309979957-982775189978999999045988-999 Q ss_pred EEEE Q ss_conf 9985 Q gi|254780687|r 198 VLII 201 (318) Q Consensus 198 ~l~l 201 (318) ++++ T Consensus 165 ~ial 168 (172) T 3hzh_B 165 NIAI 168 (172) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9999 No 7 >3h2d_A CHEC-like superfamily protein; NP_719446.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Shewanella oneidensis mr-1} PDB: 3iic_A* Probab=96.83 E-value=0.026 Score=33.01 Aligned_cols=145 Identities=8% Similarity=0.075 Sum_probs=92.2 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEE--CCCCCCEEEEEECHHHHHHHHHHHHCCC Q ss_conf 99999999999999862980799864725667998971168863999997--3677833999988789999998872788 Q gi|254780687|r 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLVITLLENLLGAS 115 (318) Q Consensus 38 ~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~--~~pl~g~~ll~id~~l~~~lid~~lGG~ 115 (318) +-.-|.......|+..++..+......++.. ..+...+.++.. ..++.|..++.++..++..++..|+|.. T Consensus 6 ~inpFi~a~~~vl~~m~~~~~~~~~~~~~~~-------~~~~~~i~~vi~~~~g~~~G~i~l~~~~~~a~~i~~~m~g~~ 78 (155) T 3h2d_A 6 FINPFLQSLLNVISTMASLELTPGKPQIKTD-------NLAKGDVSGLIGMVGPQTKGSLSITFEQKLVLQIMQNMLGEN 78 (155) T ss_dssp HHHHHHHHHHHHHHTTGGGCCEECCCEECCC-------SCCCEEEEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCEEECC-------CCCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHCCCC T ss_conf 9889999999999998598855188553204-------556773999999863754479999978999999999862999 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHCHHHHCCC-CCCCEEEEEEEEEEECCEE Q ss_conf 876666665657989999999999999999999851002732000002443110000124-7871899999886667813 Q gi|254780687|r 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTTINMNMTIENVA 194 (318) Q Consensus 116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~e~vi~i~~~v~~~~~~ 194 (318) . .++++.....+..+.+.+++.....++.. +....+..|..... ....+. ..+...+.+.|..+.|. T Consensus 79 ~--------~~~de~~~da~~El~N~I~G~~~~~l~~~-g~~~~~s~P~vi~g-~~~~i~~~~~~~~~~i~f~t~~G~-- 146 (155) T 3h2d_A 79 P--------GKINEEVTDLVGEITNMVTGGAKNLLGQK-GYEFEMATPMVVSG-QGHTISHKANGTKIIMPFTSSYGT-- 146 (155) T ss_dssp C--------SSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCEECCCEEEEE-EEEEEEECCSSCEEEEEEEETTEE-- T ss_pred C--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECCCEEEEC-CCCEEECCCCCCEEEEEEECCCCC-- T ss_conf 8--------76468889899999999999999999857-98186049979937-983775178995899999827884-- Q ss_pred EEEEEEE Q ss_conf 7999985 Q gi|254780687|r 195 SSFVLII 201 (318) Q Consensus 195 g~~~l~l 201 (318) -.+++|+ T Consensus 147 ~~i~i~~ 153 (155) T 3h2d_A 147 AFIEVCF 153 (155) T ss_dssp EEEEEEE T ss_pred EEEEEEE T ss_conf 9999995 No 8 >1squ_A CHEX protein; alpha-beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.40A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 1xko_A Probab=95.46 E-value=0.13 Score=28.50 Aligned_cols=113 Identities=5% Similarity=0.010 Sum_probs=78.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEE-CCCCCCEEEEEECHHHHHHHHHHHHCCC Q ss_conf 999999999999999862980799864725667998971168863999997-3677833999988789999998872788 Q gi|254780687|r 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGAS 115 (318) Q Consensus 37 ~~~e~~~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p~~~~i~~-~~pl~g~~ll~id~~l~~~lid~~lGG~ 115 (318) .+-.-|.......|++.++..+......++.. ..+.+.+.+++. ..++.|..++.++...+..+++.|+||. T Consensus 4 e~in~f~~a~~~vl~~~~g~e~~~~~~~~~~~-------~~~~~~i~~~i~~~G~~~G~i~l~~~~~~a~~i~~~mlg~~ 76 (155) T 1squ_A 4 RIVNALIGSVYETIRDVLGIEPKTGKPSTVSH-------IEIPHSLVTVIGITGGIEGSLIYSFSSETALKVVSAMMGGM 76 (155) T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEECCCEECSS-------BCCCSSEEEEEEEEESCCEEEEEEECHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC-------CCCCCCEEEEEEEECCCCEEEEEEECHHHHHHHHHHHHCCC T ss_conf 99999999999999998599845078535403-------56788789999980366459999929999999999983899 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHH Q ss_conf 8766666656579899999999999999999998510027320000024 Q gi|254780687|r 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 (318) Q Consensus 116 g~~~~~~~~R~lT~iE~~l~~~i~~~~~~~l~~a~~~~~~~~~~~~~~~ 164 (318) .. .++.+.....+..+.+.++.......+. .++...+..|. T Consensus 77 ~~-------~~~~e~~~da~~El~N~I~G~~~~~l~~-~g~~i~~s~P~ 117 (155) T 1squ_A 77 EY-------NQLDELALSAIGELGNMTAGKLAMKLEH-LGKHVDITPPT 117 (155) T ss_dssp CC-------CSCCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCEEECCCE T ss_pred CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCE T ss_conf 87-------6423889999999999989999999986-79818725997 No 9 >2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=50.67 E-value=10 Score=16.00 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=33.8 Q ss_pred HHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEE Q ss_conf 99457999789825789973899999999999999878897899 Q gi|254780687|r 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 (318) Q Consensus 255 dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AV 298 (318) ..-.+++||+|-+-...+..+..++||+.+..+-.+....=||+ T Consensus 114 ~~~~~~~GD~IG~~~~~~G~l~f~~NG~~~Gva~~~i~~~ly~~ 157 (170) T 2e63_A 114 DLDQLGEGDRVGVERTVAGELRLWVNGRDCGVAATGLPPRVWAV 157 (170) T ss_dssp CGGGCCSSCCEEEEECTTSCEEEEESSCEEEEEECCCCSCEEEE T ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCEEEE T ss_conf 64547768799999979976999989988368883899988999 No 10 >3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp} Probab=29.99 E-value=21 Score=13.90 Aligned_cols=40 Identities=8% Similarity=0.195 Sum_probs=27.6 Q ss_pred HCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEEC Q ss_conf 45799978982578997389999999999999987889789999842 Q gi|254780687|r 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 (318) Q Consensus 257 l~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~ 303 (318) -++++||+|=++.....-|-+|+++-.+..+ ++. |+|... T Consensus 88 ~~~~pGDLvff~~~~~~HVgIyiG~g~~Iha-----g~~--v~i~~i 127 (142) T 3gt2_A 88 QQARKGDLIFYGPEGTQSVAMYLGNNQMLEV-----GDV--VQVSPV 127 (142) T ss_dssp GGCCTTCEEEESGGGCSEEEEEEETTEEEEE-----SSB--EEEEEC T ss_pred CCCCCCEEEEECCCCCCEEEEEECCCEEEEC-----CCC--EEEEEE T ss_conf 5799981899569999889999679969978-----995--899884 No 11 >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Probab=29.97 E-value=21 Score=13.90 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=45.2 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCEEEEHHHHHHCCCCC-EEEEEEECC---CCCCEEEE---EECHHHHHHHHH--HHHC Q ss_conf 99999999986298079986472566799897116886-399999736---77833999---988789999998--8727 Q gi|254780687|r 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLS---SWSSNFFI---GCSNNLVITLLE--NLLG 113 (318) Q Consensus 43 ~r~l~~~l~~~~~~~v~v~~~~ve~~~~~e~i~~l~~p-~~~~i~~~~---pl~g~~ll---~id~~l~~~lid--~~lG 113 (318) ++.+.+.|+...+..+.+.-..-. .+.+.+. +... .+..+.... +..-...+ .+.+.-.-.++. .-+| T Consensus 20 ~~Hl~~VLR~k~Gd~i~v~dg~g~--~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~i~l~~~l~k~~~~e~il~k~tELG 96 (228) T 1v6z_A 20 TRHLVEVLRARVGDRFTVFDGERE--ALAEVVD-LGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELG 96 (228) T ss_dssp HHHHHTTSCCCTTCEEEEECSSCE--EEEEEEE-CCSSCEEEEEEEECCCCSCSSCEEEEEECCSTTHHHHHHHHHHHTT T ss_pred HHHHHHCCCCCCCCEEEEEECCCC--EEEEEEE-CCCCEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHEE T ss_conf 889996681999999999979988--8999997-1685389998640545588851589973028078999999988431 Q ss_pred CCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 888766666656----579899999999999999999998510 Q gi|254780687|r 114 ASHETIPQLYNR----SLSTVEKKLAKRTIAQISAVLNQCIST 152 (318) Q Consensus 114 G~g~~~~~~~~R----~lT~iE~~l~~~i~~~~~~~l~~a~~~ 152 (318) =. ...+-...| .+. +.+ ++++-..+.++...+-.. T Consensus 97 V~-~I~p~~sers~~~~~~--~~k-~~R~~~ii~~A~~Qsgr~ 135 (228) T 1v6z_A 97 AT-RIQPLVTRHSVPKEMG--EGK-LRRLRAVALEAAKQSGRV 135 (228) T ss_dssp CS-EEEEEECTTCSCSCCC--HHH-HHHHHHHHHHHHHHTTCS T ss_pred EE-EEEEECCCCCCHHHHH--HHC-CCHHHHHHHHHHHHCCCC T ss_conf 17-9999700344212220--110-213789999999964994 No 12 >1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Probab=29.73 E-value=22 Score=13.87 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=22.6 Q ss_pred HHHHHCCCCCCEEECCCCC-------CCEEEEEECCEEEEEEE Q ss_conf 9899457999789825789-------97389999999999999 Q gi|254780687|r 253 LKDVVTLKIGQVIPFLHRE-------KTCAILSANGKEIYSCE 288 (318) Q Consensus 253 l~dil~L~vGDVI~L~~~~-------~~~v~v~v~g~~~f~g~ 288 (318) +.+.+.|.+||||-...+. .|.|++.++|....+-+ T Consensus 177 lS~~~tL~pGDvI~TGTP~Gvg~l~~GD~v~~~i~glG~L~n~ 219 (225) T 1saw_A 177 VSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFK 219 (225) T ss_dssp HHTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETTTEEEEEE T ss_pred HHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEEEE T ss_conf 8679625999589828989875489998999998673559989 No 13 >1nr9_A Protein YCGM; structural genomics, putative isomerase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.70A {Escherichia coli} SCOP: d.177.1.1 Probab=24.09 E-value=27 Score=13.22 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=20.7 Q ss_pred CHHHHHCCCCCCEEECCCCCC-------CEEEEEECC Q ss_conf 098994579997898257899-------738999999 Q gi|254780687|r 252 TLKDVVTLKIGQVIPFLHREK-------TCAILSANG 281 (318) Q Consensus 252 ~l~dil~L~vGDVI~L~~~~~-------~~v~v~v~g 281 (318) .+.+.+.|.+||+|-...+.. |.+++.++| T Consensus 177 ~lS~~~tL~pGDvI~TGTP~Gvg~l~~GD~v~~~ieG 213 (223) T 1nr9_A 177 YMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 213 (223) T ss_dssp HHTTTSCBCTTCEEECCCCSCCEEECTTCEEEEEETT T ss_pred HHHCCCEECCCCEEECCCCCCCCCCCCCCEEEEEEEC T ss_conf 9868872699988991998987178999999999989 No 14 >2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A Probab=23.08 E-value=29 Score=13.09 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECC Q ss_conf 89999999997408007999981234309899457999789825 Q gi|254780687|r 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 (318) Q Consensus 225 ~~~~~~l~~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~ 268 (318) +.|-..++.... .++.+|.. +....+++||.|.+. T Consensus 9 ~~~f~~I~~G~K----tiE~Rl~d-----~k~~~ik~GD~I~F~ 43 (109) T 2z0t_A 9 EEYIELIKAGKK----KIEGRLYD-----EKRRQIKPGDIIIFE 43 (109) T ss_dssp HHHHHHHHTTSC----CEEEEECC-----TTGGGCCTTCEEEEG T ss_pred CHHHHHHHCCCC----EEEEEECH-----HHHHHCCCCCEEEEE T ss_conf 116899876998----89998042-----668728999999996 No 15 >3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, activator, chromosomal protein, coiled coil, DNA damage; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Probab=23.01 E-value=29 Score=13.08 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=17.0 Q ss_pred CCEEEEEEEEEEECCEEEEEEEEEE Q ss_conf 7189999988666781379999850 Q gi|254780687|r 178 NEFVTTINMNMTIENVASSFVLIIP 202 (318) Q Consensus 178 ~e~vi~i~~~v~~~~~~g~~~l~lP 202 (318) ..-++++.+.....+..+.+.-.+| T Consensus 284 ~gd~vlvD~G~~y~gY~sDitRT~~ 308 (467) T 3biq_A 284 GNGCILASCGIRYNNYCSNITRTFL 308 (467) T ss_dssp CSEEEEEEECEEETTEECCEEEEEE T ss_pred CCCEEEEEECEEECCCCCCCEEEEE T ss_conf 5998999835599956157437998 No 16 >3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 2xiv_A* Probab=22.15 E-value=30 Score=12.97 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=26.8 Q ss_pred HHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEE Q ss_conf 94579997898257899738999999999999998788978999984 Q gi|254780687|r 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 (318) Q Consensus 256 il~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~ 302 (318) .-++++||+|=+......-|-+|+++-.+..+ .+....|+|.. T Consensus 156 ~~~~~pGDLvff~~~~~~HVgIy~G~g~~Iha----~~~g~~V~i~~ 198 (214) T 3ne0_A 156 SSQMRRGDVIFYGPNGSQHVTIYLGNGQMLEA----PDVGLKVRVAP 198 (214) T ss_dssp GGGCCTTCEEEESGGGCSEEEEEEETTEEEEC----CSTTCBSEEEE T ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCEEEEE----CCCCCCEEEEE T ss_conf 27899971899569999879999669989997----98999789988 No 17 >1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1 Probab=22.06 E-value=30 Score=12.96 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=16.2 Q ss_pred ECHHHHHCCCCCCEEECCCCC Q ss_conf 309899457999789825789 Q gi|254780687|r 251 TTLKDVVTLKIGQVIPFLHRE 271 (318) Q Consensus 251 l~l~dil~L~vGDVI~L~~~~ 271 (318) =++...++|++||++.+-++- T Consensus 41 DPva~~~g~~~GdiikI~R~S 61 (78) T 1hmj_A 41 DPVIQEIGAKEGDVVRVIRKS 61 (78) T ss_pred CHHHHHHCCCCCCEEEEEECC T ss_conf 997897389999489999748 No 18 >1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1 Probab=21.27 E-value=28 Score=13.18 Aligned_cols=19 Identities=11% Similarity=0.420 Sum_probs=13.5 Q ss_pred CHHHHHCCCCCCEEECCCC Q ss_conf 0989945799978982578 Q gi|254780687|r 252 TLKDVVTLKIGQVIPFLHR 270 (318) Q Consensus 252 ~l~dil~L~vGDVI~L~~~ 270 (318) ++...+++++|||+.+.++ T Consensus 44 Pva~~~g~k~GdvikI~R~ 62 (77) T 1eik_A 44 PVAKAIGAKRGDIVKIIRK 62 (77) T ss_dssp HHHHGGGCCTTCEEEEEEE T ss_pred HHHHHHCCCCCCEEEEEEC T ss_conf 7254007878858999965 Done!