HHSEARCH alignment of GI: 254780687 and SCOP domain: d1o6aa_

Alignment
>d1o6aa_ b.139.1.1 (A:) Putative flagelar motor switch protein FliN {Thermotoga maritima [TaxId: 2336]}
Probab=99.72  E-value=3.5e-17  Score=128.86  Aligned_cols=81  Identities=20%  Similarity=0.295  Sum_probs=75.2

Q ss_pred             HHHHHCEEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEEECCCCHHHHHH
Q ss_conf             99740800799998123430989945799978982578997389999999999999987889789999842581467888
Q gi|254780687|r  233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK  312 (318)
Q Consensus       233 ~~l~~~~v~i~a~Lg~~~l~l~dil~L~vGDVI~L~~~~~~~v~v~v~g~~~f~g~~G~~~~~~AVrI~~~i~~~~~~l~  312 (318)
                      +.++++||+++|+||+++++++|+++|++||||+|+.+.+++++++|||+++|+|++|.+|+++||||++.+..+++ ++
T Consensus         5 ~~i~dipv~l~~~Lg~~~l~l~el~~L~~Gdvi~L~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~~i~~~e~-~~   83 (87)
T d1o6aa_           5 ELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRITEIVSPKER-LE   83 (87)
T ss_dssp             HHHTTCEEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEECCHHHH-HH
T ss_pred             HHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEECCCHHH-HH
T ss_conf             23326717999999300845999857999999991898999799999999999999999999999999981595899-88


Q ss_pred             HH
Q ss_conf             87
Q gi|254780687|r  313 NF  314 (318)
Q Consensus       313 ~~  314 (318)
                      .+
T Consensus        84 ~l   85 (87)
T d1o6aa_          84 LL   85 (87)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             64


SCOP domain information

class: All beta proteins
fold: Surface presentation of antigens (SPOA)
superfamily: Surface presentation of antigens (SPOA)
family: Surface presentation of antigens (SPOA)
domain: Putative flagelar motor switch protein FliN
species: Thermotoga maritima [TaxId: 2336]