BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] (318 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI Sbjct: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP Sbjct: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 Query: 301 TDRINFDQKSLKNFLHKR 318 TDRINFDQKSLKNFLHKR Sbjct: 301 TDRINFDQKSLKNFLHKR 318 >gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/317 (65%), Positives = 254/317 (80%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++ Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300 Query: 301 TDRINFDQKSLKNFLHK 317 DRINFDQ+SL+NFLHK Sbjct: 301 QDRINFDQESLRNFLHK 317 >gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 169/304 (55%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + +D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + ++ +S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 168/304 (55%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L Y D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + ++ + S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512] Length = 314 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 168/304 (55%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 11 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 70 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ N A+L +WS N + C N VITL+E+LLGA+ ETI + +R LS +E Sbjct: 71 LVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRLLSIIEL 130 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 131 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINMSLTLAG 190 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ T Sbjct: 191 IVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARIRLQDLT 250 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 251 LRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 310 Query: 313 NFLH 316 + ++ Sbjct: 311 HLMN 314 >gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84] gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84] Length = 314 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M QS H + + P+L A+LTG LGD T+ K+ ++ G +Y +FLP I K + LDV + Sbjct: 1 MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Y C+SG S ++ N SL +WS NF +GC V+TL+E+LLGA ETI Sbjct: 60 GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R LS +E L+ +I+ VL ++ T P L+ Y+I+ +++F Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I M +++ S V+I+PQ LL+T + + ++N S + + + + V Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSASTGA-WAEQLNEQVRRSQV 238 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL + L +G VIPF+ +SAN K++Y CE GR G+NYT+R+ Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + L++ ++ Sbjct: 299 KDTVNSDDELLRHLMN 314 >gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] Length = 316 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 167/304 (54%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEFAAAINMSLTLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + ++ S + + + + +V ++ RI L+ T Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4] gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4] Length = 319 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 169/304 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ LLARLTG LGD K++EK+ G LY +FLP +F + +L +++ Y +SG Sbjct: 15 PMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLMR 74 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 +I S +NFV + SL +WS NF + C N VITL+E LLG E I + R LS +E Sbjct: 75 DLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNIE 134 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ T P E ++ + + EF ++M++ + Sbjct: 135 LDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKLG 194 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LIIPQ+TLLKT + + S+N+ ++ + A + + V ++ RI+L+ Sbjct: 195 KITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQSL 254 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 +L V L G VIPFL + +SANG+++Y+CE GR G +YT+R+ + D + L Sbjct: 255 SLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSELL 314 Query: 312 KNFL 315 ++ + Sbjct: 315 RHLM 318 >gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42] gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42] Length = 316 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 165/303 (54%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +FLP I K + LDV +SY C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTVSYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ N A+L +WS N + C N VITL+E+LLGA+ +TI + R LS +E Sbjct: 73 LVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIEEPAERLLSVIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LIIPQ LLKT + + ++ S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFL 315 + + Sbjct: 313 HLM 315 >gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 167/304 (54%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGDK + KI SS G +Y +F P + K + L+V ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N +L +WS N I C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIEEPADRLLSIIEM 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + ++ + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F L++PQ LLKT + + ++ S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3] gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] Length = 319 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI K+ S +G+LY +FLP IF + + +D+ Y +SG + +I + Sbjct: 18 LLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTDLIAN 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 NF + SL +W NF + N VI L+E +LGA+ +TI + RSLS +E LA Sbjct: 78 IGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIELDLAA 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I VL ++ ++ + + ++ + T+ M + I V+S Sbjct: 138 MVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGKVSSE 197 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++ + + ++ + + +D + + + V ++ RI L+ TL+ + Sbjct: 198 FALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLTLRTI 257 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 258 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 317 Query: 315 L 315 + Sbjct: 318 M 318 >gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] Length = 319 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + +I + Sbjct: 18 LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E LA Sbjct: 78 VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I+ VL ++ ++ ++ + ++ + TI M + I V+S Sbjct: 138 MVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 197 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ TL+ + Sbjct: 198 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 257 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 258 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 317 Query: 315 L 315 + Sbjct: 318 M 318 >gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM Length = 321 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + +I + Sbjct: 20 LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 79 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E LA Sbjct: 80 VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 139 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I+ VL ++ ++ ++ + ++ + TI M + I V+S Sbjct: 140 MVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 199 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ TL+ + Sbjct: 200 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 259 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 260 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 319 Query: 315 L 315 + Sbjct: 320 M 320 >gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens] gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens] Length = 321 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + +I + Sbjct: 20 LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 79 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E LA Sbjct: 80 VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 139 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I+ VL ++ ++ ++ + ++ + TI M + I V+S Sbjct: 140 MVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 199 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ TL+ + Sbjct: 200 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 259 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 260 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 319 Query: 315 L 315 + Sbjct: 320 M 320 >gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] Length = 315 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 155/299 (51%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLAR+ G LGD K I++++ L ++ + LP + + + DV I+Y ++G + ++ Sbjct: 16 LLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAGFRAGLRNELVAG 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F IGC + ++I L+E LLGA I + RSLS +E +A Sbjct: 76 LGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + + +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT +S K +N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTI 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 ARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTHGSEQDILRHIM 314 >gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 156/299 (52%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC + ++I L+E LLGA +I + RSLS +E +A Sbjct: 76 LGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 156/299 (52%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC + ++I L+E LLGA +I + RSLS +E +A Sbjct: 76 LGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 156/299 (52%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNDLIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC + ++I L+E LLGA +I + RSLS +E +A Sbjct: 76 LGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] Length = 315 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 155/299 (51%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLAR+TG LGD KTI + + LG+++ + LP++ K++ D+ I Y + G + +I Sbjct: 16 LLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAGVKMGFRNELIAD 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 E + S SL +W + F IGC + ++I L+E LLGA I + R+LS +E +A Sbjct: 76 LGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLPRALSKIEIDVAV 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 +I+ + + P + ++ L + + +I+M + V S+ Sbjct: 136 PVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASIDMTFGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +IIPQ LLKT ++ + ++E+ D + + + V ++ RI L+ TL + Sbjct: 196 FSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEARIQLESLTLDTI 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + ++ANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti] Length = 258 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 122/237 (51%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC ++I L+E LLG + +I + RSLS +E +A Sbjct: 76 LGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTL 252 >gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56] Length = 209 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 112/208 (53%) Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 +E+LLGA+ +TI + +R LS +E LA +I+ VL ++ P+L + D Sbjct: 1 MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + +EF INM++T+ + S F LI+PQ LLKT + + ++ S + Sbjct: 61 TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + +V ++ RI L+ TL+ + L +G VIPF + +SAN KE+Y C Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFL 315 E GR G+NY +R+ D +N D + +++ + Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLM 208 >gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5] Length = 188 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 97/187 (51%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E LA +I+ VL ++ P+L + D + +EF INM++T Sbjct: 2 IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ Sbjct: 62 LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181 Query: 310 SLKNFLH 316 +++ ++ Sbjct: 182 LIRHLMN 188 >gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] Length = 315 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/306 (23%), Positives = 127/306 (41%), Gaps = 2/306 (0%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 +T P LL R+ G GD IE SL L + F+ ++ + Q G Sbjct: 11 DTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSARPGEIQQG 70 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 ++ F ++ VF + WS + C LVI ++E LLG S + R LS Sbjct: 71 SRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELDIAARPLS 130 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++ Q++ L + S + +D + + + I + + Sbjct: 131 GIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKPM-LDIPEAEDDPKPDFHAAAITLEL 189 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 +V + LI+PQ LLKT I+ S +N +D + + + +N+ + L Sbjct: 190 QFGSVVTPLTLILPQSILLKTKPIT-SKKNAPNAVDDDWAERLNARVSRSQINLQAAVAL 248 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ++ L++G +I F LSANGK +Y+C LG+ G Y +++ D+ Sbjct: 249 APLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVEGDAGPDE 308 Query: 309 KSLKNF 314 +F Sbjct: 309 NWRSDF 314 >gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771] Length = 169 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 4/144 (2%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N A+L +WS N + C N VITL+ + +R LS +E Sbjct: 73 LIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDREPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQES 156 LA +I+ +C + Q + Sbjct: 133 DLAVMVFDKIA----KCCARGQRA 152 >gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 303 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 23/268 (8%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S +SG F ++ ++ N V W + +G + V T++E LLGA P Sbjct: 48 SLMSVESGLFGDLLEPYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPP 107 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S++E ++A+ T QI L + ++ LE DF I Sbjct: 108 VEEARNFSSIELRIAQMTFEQIGKALEAAFALVSVATLKLERTETRMDFAII-------G 160 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-----LID 229 R SN+ V + + N LIIPQ +L SLS E+ S D I Sbjct: 161 RRSNKAVAAKFLLQAL-NRGGEMFLIIPQ-AVLNPMRQSLSKVLTGESTSRDPRWEKQIS 218 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 RKT V + + + TL ++ LK+GQV+ ++ L N + ++ C++ Sbjct: 219 TEVRKT---EVTLRAVLEERTLTLGEIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQV 275 Query: 290 GRVGKNYTIRITDRINFDQKSLKNFLHK 317 G+ Y +R+ D+I+ D++ + L + Sbjct: 276 GQANGAYVLRVEDQIDQDKEFMDGVLAR 303 >gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 321 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 7/259 (2%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ S + + + +++ V + W + +G + +++E LLG E Sbjct: 65 LAVQSVSNERIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEE 124 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSN 178 P L +RSL+ VE++LA R + + L ++S +E + +++ + T R SN Sbjct: 125 PFLEDRSLTNVEQRLAYRMFEEAATALETAFEAIADTSLKVERLENRMEFAQ--TGRKSN 182 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY 236 V M I +IIPQ L L+ L + S + + F ++ Sbjct: 183 PCVLA-KMTAEIIGREGEIFIIIPQSVLNPLRENLTQVLS-GEVAGRDTRWTKQFQQEVQ 240 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V + + ++ TL++V ++G V+ KT L N + +++C LG+V +Y Sbjct: 241 RTEVKLTAILEEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSY 300 Query: 297 TIRITDRINFDQKSLKNFL 315 T+R+ + I + + L + L Sbjct: 301 TVRVEELIEQEGELLDDIL 319 >gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 335 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V + W + +G + + T++E L G+ P Sbjct: 81 SLSGVESGRFGEFLDAYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPP 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S +E ++A+ Q+ L +++ LE +F I Sbjct: 141 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERTETRMEFAVI-------G 193 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232 R SN+ V + + N LIIPQ T+L +L+ E+ + D A Sbjct: 194 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALAKVLTGESAARDPRWAQQIA 251 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + TL ++ LK+GQV+ T L N + ++ C G+ Sbjct: 252 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 311 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 Y +R+ D IN +++ L Sbjct: 312 QGAYVLRVEDAINPEKEGGHGLL 334 >gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] Length = 319 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/268 (22%), Positives = 126/268 (47%), Gaps = 19/268 (7%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 IS + ++ + ++ F+ N + + W + +G + + TL++ L GA Sbjct: 62 ISVSYVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEP 121 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISA-VLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLS 177 P R S +E ++A RT+ +++A L + + E++ +E +D+ R + Sbjct: 122 PIDDERPFSNIETRIA-RTMFEVAAKALAESFAPIAETTLKIERIESRMDF--AVVGRRN 178 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI-----SLSSQNKSENQSEDLIDP 230 N V + I F+ ++P TL L+ L +SS++K Q Sbjct: 179 NPAVVARLLQQAIGRGGEVFI-VMPHSTLNPLRQRLSQVLSGEMSSRDKQWTQH------ 231 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 F + + V ++ + ++ +L D+ L++GQVI ++ L+ N + +++C+LG Sbjct: 232 FHNEIQRTEVKLEAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQLG 291 Query: 291 RVGKNYTIRITDRINFDQKSLKNFLHKR 318 ++ +YT++I + I+ ++K L + L R Sbjct: 292 QLNGSYTLQIDELIHEEEKDLFDDLRNR 319 >gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] Length = 344 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 5/257 (1%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 90 SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 149 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R+ S +E ++A+ Q+ L +++ LE + R SN+ Sbjct: 150 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERM-ETRMEFAVIGRRSNKA 208 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQL 238 V + + N LIIPQ T+L +L E+ + D + A + + Sbjct: 209 VQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKT 266 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + + + TL ++ LK+GQV+ T L N + ++ C G+ +Y + Sbjct: 267 TVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVL 326 Query: 299 RITDRINFDQKSLKNFL 315 R+ + IN +++ L Sbjct: 327 RVEESINPEKEGGHGLL 343 >gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5] Length = 98 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 48/82 (58%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSN 94 +I N A+L +WS N Sbjct: 73 LIDDLSANVTLVDATLRNWSQN 94 >gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 340 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 86 SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 145 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S +E ++A+ Q+ L +++ LE +F I Sbjct: 146 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERMETRMEFAVI-------G 198 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232 R SN+ V + + N LIIPQ T+L +L E+ + D + A Sbjct: 199 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIA 256 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + TL ++ LK+GQV+ T L N + ++ C G+ Sbjct: 257 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 316 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 +Y +R+ + IN +++ L Sbjct: 317 QGSYVLRVEESINPEKEGGHGLL 339 >gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] Length = 344 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 90 SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 149 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S +E ++A+ Q+ L +++ LE +F I Sbjct: 150 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERMETRMEFAVI-------G 202 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232 R SN+ V + + N LIIPQ T+L +L E+ + D + A Sbjct: 203 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIA 260 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + TL ++ LK+GQV+ T L N + ++ C G+ Sbjct: 261 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 320 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 +Y +R+ + IN +++ L Sbjct: 321 QGSYVLRVEESINPEKEGGHGLL 343 >gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099] gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti MAFF303099] Length = 315 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 130/308 (42%), Gaps = 21/308 (6%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + + L K ++ + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + F + + S+ S + + ++ L G ET Sbjct: 62 VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ Q++ LN S + L + + + L + I Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALNG--SGRRSLDLRLPVPRAMSGTEAKRHVLRDGAALRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-----FARKTYQLN 239 + ++ + + + +PQ I L+S++ + + + D P F+ + + Sbjct: 180 VLGISTPADSGTVTVTMPQR-------IVLASRDSAASTAGDDHGPSWRERFSEEVMRST 232 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + L + TL D+ +L++GQVI F ++ A LSA G+ ++ CE G++G+NYT+R Sbjct: 233 VALEATMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVR 292 Query: 300 ITDRINFD 307 I R FD Sbjct: 293 I--RHPFD 298 >gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] Length = 313 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 31/269 (11%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + +S + + I+ +++ N V + + +W S +G + TL+E G P Sbjct: 58 TVSSIGTERIGDILDAYENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPP 117 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 + R LS +E KLA+ + L ST E+ E DF I Sbjct: 118 NIEKRPLSNIEIKLAQTIFDLLPKALQTSFSTISETVFKFERLETKLDFAVI------AP 171 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFA 232 R + F+T IN+ + + ++IPQ +L + Q + + D + DP Sbjct: 172 RNTFGFITRINLRILGRH--GEMFVVIPQSSL------NSIRQELGRDLANDAVVRDPRW 223 Query: 233 RKTYQ-----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 K Q V + I L D LKIGQV+P K+ A L N + ++ C Sbjct: 224 TKQIQNEISRTEVEVRAIIEDSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWC 283 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++G+ YT+R+ D I DQ+ K+F+ Sbjct: 284 QVGQEDGFYTLRVEDFI--DQE--KDFIE 308 >gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 309 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 25/269 (9%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S ++ +S +F I+ ++ N + W S+ +G + + T++E LLG+ P Sbjct: 54 SLSNVESQRFGDILEPYESNAIAGIFQAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPP 113 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 RS S +E ++A+R Q+ + + ++ LE DF I ++N Sbjct: 114 LDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVADTPFKLERTELRMDFAVIG--RRNNQ 171 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETL------LKTTLISLSSQNKSENQSEDLI 228 ++ +F+ + N ++IPQ L L L+ +S S + Sbjct: 172 AVAAKFL------LQALNRGGEMFIVIPQSVLNPMRQSLARILVGETSARDSRWTRQ--- 222 Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 A + + V + + K L ++ L +GQV+ ++ L N ++++ C+ Sbjct: 223 --IAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRVKLVGNDRDLFWCD 280 Query: 289 LGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +G+ +R+ I+ DQ+ + + L + Sbjct: 281 VGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309 >gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] Length = 309 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/265 (21%), Positives = 110/265 (41%), Gaps = 17/265 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S +S ++G+ ++ ++ V + W S+ +G + V T++E L GA P Sbjct: 54 SLSSIETGRIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPP 113 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQC---ISTTQESSPNLEDFYDIDYLKKNTNRLS 177 RS S +E ++++ Q+ L+ +S TQ E D + + N Sbjct: 114 VDDERSFSNIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQETRMDFAVIGRRNN--- 170 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 T + N +IIPQ L +L+ +E D P K + Sbjct: 171 --LAVTAKFLLQALNRGGEMFVIIPQSALTPMRQ-ALARTTPAETSGRD---PIWTKQIR 224 Query: 238 LNVN---IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 VN + R L++ L ++ K+GQV+ +T L + + ++ C LG+ Sbjct: 225 DEVNRTQVKVRAILEERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQA 284 Query: 293 GKNYTIRITDRINFDQKSLKNFLHK 317 Y +R+ ++IN +Q+ + + L + Sbjct: 285 EGAYVLRVEEQINLNQEFVDDILPR 309 >gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] Length = 319 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 9/279 (3%) Query: 44 KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103 + + + ++K IS + ++ + ++ F+ N + + W + +G + Sbjct: 46 RLMADVMRQKSPSPSYISVSYVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDF 105 Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA-VLNQCISTTQESSPNLED 162 + TL++ L GA P R S +E ++A RTI +I+A L + + E++ +E Sbjct: 106 IFTLVDVLFGADGTEPPIDEERPFSNIETRIA-RTIFEIAAKSLAESFAPIAETTLKIER 164 Query: 163 FYD-IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK 219 +D+ R +N V + I FV ++P TL L+ L + S Sbjct: 165 IESRMDF--AVVGRSNNPAVVGRLLQQAIGRGGEVFV-VLPHATLNPLRQALSQVLSGEM 221 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 S + + F + + V ++ + ++ L ++ LK+GQVI ++ L+ Sbjct: 222 S-GRDKQWTQHFHNEIQRTEVKLEAILEEREMHLGELSNLKVGQVIELQATARSPVTLAC 280 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318 N + I++C+LG++ +YT++I + I+ ++K L + L R Sbjct: 281 NDQPIFTCQLGQLDGSYTLQIEELIHEEEKDLFDDLRNR 319 >gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] Length = 315 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 25/310 (8%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + ++ L K + + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + +NF + + S + + ++ L G + Sbjct: 62 VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ +++ LN + E L + ++ + L + I Sbjct: 122 RDLSPLEADVSTMVFQEVAQALNGSGQRSLEL--RLPAPRAMSGIEARRHVLRDGAAIRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-------FARKTYQ 237 + ++ + S +++PQ I L+ ++ + SE DP F+ + + Sbjct: 180 VLGISTPVDSGSITVMMPQR-------IVLAGRDGIASASE--ADPGTSWRARFSEEVMR 230 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V ++ + L + TL D+ L++GQVI F ++ A L A G+ ++ CE G++G+NYT Sbjct: 231 STVALEATMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYT 290 Query: 298 IRITDRINFD 307 +RI R FD Sbjct: 291 VRI--RHPFD 298 >gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/309 (19%), Positives = 130/309 (42%), Gaps = 28/309 (9%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ P+L R+ D + + S+S Y IS + ++ + Sbjct: 31 PMLPVLFDRMARVFAD--AMRQKSTSPSY-------------------ISVSCIENERIG 69 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 ++ ++ N + + W + +G + + T+++ L GA P RS S +E Sbjct: 70 DVLDEYEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEERSFSNIE 129 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTINMNMTI 190 ++A+ + L + S E++ +E +D+ R +N V + I Sbjct: 130 TRIARSVFEVAAKALQESFSPIAETTLKIERVESRMDF--AVVGRRNNPAVVARLLLQAI 187 Query: 191 ENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 FV ++P TL L+ L + S S + + F + + V + + Sbjct: 188 GRGGEIFV-VMPHSTLNPLRQRLSQVLSGEMS-GRDKQWTQHFQTEIQRTEVRLQAVLEE 245 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ TL ++ L++GQ+I ++ L N + I++C LG++ +YT+++ D I+ ++ Sbjct: 246 RELTLGEIANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVEDLIHLEK 305 Query: 309 KSLKNFLHK 317 + + L + Sbjct: 306 DIVDDLLSR 314 >gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] Length = 314 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 27/241 (11%) Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 +W S IG ++ + TL E L G P R LS++E +LA + + L Sbjct: 88 AWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKALDLFGRALQSA 147 Query: 150 ISTTQESSPNLE------DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 ST +++ LE DF I N F T + + I ++IPQ Sbjct: 148 FSTVSDTAFKLERVETRLDFAVIAP--------RNAFGVTAKIKLRILGRHGEMFILIPQ 199 Query: 204 ETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVN---IDTR--INLKKTTLKDV 256 L Q N S+D DP + + + I+ R I + L D+ Sbjct: 200 AALNSV------RQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDI 253 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 LK+G ++ T L N + ++ C LG+ YT+RI + ++ +Q+ + L Sbjct: 254 ADLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDEMLS 313 Query: 317 K 317 + Sbjct: 314 R 314 >gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110] gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/255 (20%), Positives = 110/255 (43%), Gaps = 13/255 (5%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + II ++ N V + W S I + V T++E + G+ P RS S Sbjct: 66 RVGDIIKDYEANAVAAVLYAEQWDSRIIIMLDRDFVFTMVEAMFGSDGAEPPLDVERSFS 125 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E +L + + + L + T + +E + R N +I N+ Sbjct: 126 NIEIRLVQALFERFAKALQSAFAGTSNVTFRVERV-ETAMASLAIGRSGN---MSICANI 181 Query: 189 TIENV--ASSFVLIIPQETL--LKTTL--ISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + LIIP L L+ L + +S S+ + + ++ +T V + Sbjct: 182 MLQALYRGGQMFLIIPHSALNPLRQKLAHVVVSDGRASDPRWREQMESEVHRT---EVTL 238 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ K TL DVV ++GQV+ +T A L +N + ++ C++G++ Y +++ D Sbjct: 239 SAVLDEKMVTLGDVVKFQVGQVLELEATPRTLARLESNNQVLFWCQIGQLDGYYAMQVAD 298 Query: 303 RINFDQKSLKNFLHK 317 ++ ++ + + L + Sbjct: 299 PVDQKREFVDDILSR 313 >gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 315 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/305 (18%), Positives = 120/305 (39%), Gaps = 14/305 (4%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ RL G G+ + ++ L K + + V + + + + Sbjct: 13 LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + F + S+ S + + ++ L G + R LS +E ++ Sbjct: 73 RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 Q++ LN S + L + + L + I + ++ + Sbjct: 133 TMVFQQVAQALNG--SGKRSLDLRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-----FARKTYQLNVNIDTRINLKK 250 + + +PQ +L +S++ + S+D P F+ + + V ++ + L + Sbjct: 191 TVTVTMPQRVVL-------ASRDGAVPVSDDDHGPSWRARFSEEVMRSTVALEATMPLAR 243 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 TL D+ +IG VI F ++ A LSA GK ++ CE G++G+NYT+RI + Q Sbjct: 244 LTLGDLAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDF 303 Query: 311 LKNFL 315 + + Sbjct: 304 IDGLM 308 >gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 311 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 15/255 (5%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + S + S I+ ++ + + +W + IG + + T++E L GA P Sbjct: 56 SLSGVGSDRLSDIVDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPP 115 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNE 179 R S VE +A+ + L S + + LE +DYL RL+N Sbjct: 116 LDMPRVFSNVEMHVAQALFERFGKALQSSFSRASDVNFTLERVETRMDYLA--VGRLNNM 173 Query: 180 FVTTINMNMTIENVASSFVLIIPQETL-----LKTTLISLSSQNKSENQSEDLIDPFARK 234 V N+ + + ++IP L + +++ S + N S L R Sbjct: 174 AVCA-NILLQGLDRGGEMFIVIPHAALNPIRQALSQIVTGESASTDPNWSRQLHSEIKRT 232 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L ++ R TL +V +GQVI T L N + ++ C+LG++ Sbjct: 233 EVVLKAVLEER----PFTLGEVAGFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNG 288 Query: 295 NYTIRITDRINFDQK 309 Y++++ + + DQK Sbjct: 289 VYSLQVKE--SADQK 301 >gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] Length = 323 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 225 EDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 E +DP ++ Q +V I+ + TL +++ LK+GQV+P L + Sbjct: 226 EKRMDPLWTKRLRKEVSQAHVQIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRS 285 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 K +Y C LG++GKN++IR+TD I+ +++ + +H Sbjct: 286 GDKSLYKCSLGKIGKNFSIRVTDPIDEEKEMINELVH 322 >gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 275 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 15/255 (5%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + S + S I+ ++ + + +W + IG + + T++E L GA P Sbjct: 20 SLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPP 79 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNE 179 R S VE +A+ + L S + + L+ +DYL R +N Sbjct: 80 LDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLDRVETRMDYLA--IGRPNNM 137 Query: 180 FVTTINMNMTIENVASSFVLIIPQETL--LKTTL---ISLSSQNKSENQSEDLIDPFARK 234 V+ + ++ F+ +IP L ++T L ++ S + N S L R Sbjct: 138 AVSAQILLQGLDRGGEMFI-VIPHAALNPIRTALSQIVTGESASTDPNWSRQLHSEIQRT 196 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L ++ R TL +V +GQVI T L N + ++ C++G++ Sbjct: 197 EVVLRAVLEER----PFTLGEVAKFHVGQVIKLNATPNTMVRLECNNQRLFWCQMGQLNG 252 Query: 295 NYTIRITDRINFDQK 309 Y++++ + + DQK Sbjct: 253 AYSLQVKE--SADQK 265 >gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA 110] gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S +F ++S V S W + +NL+ ++++ LLG Sbjct: 131 VEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWDNFGMATVDSNLIYSMIDVLLGGRRG 190 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T ++ R +T+E +L KR + + A Q + + ID L+ N Sbjct: 191 TSQLRIEGRPYTTIETELVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 244 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 245 AISRPANAAIL-VRLRIDMEDRGGNIELLLPYATIEPIRGVLLQMFMGEKFGR------D 297 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P FA + Q +++D + LK ++ LK+G +P R + I Sbjct: 298 PVWEGHFATEIGQAEISVDAVLYEADIPLKQLMRLKVGDTLPLDMRADANVTVRCGDVTI 357 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 358 TEGRMGRVGDRVAIRVT 374 >gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] Length = 343 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTGLITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMD-VEFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 188 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSLA 246 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K ++V ID I ++ TLKDV+ K G +IP E +L Y C+LG Sbjct: 247 LKDEIMDIDVGIDATIVEQQITLKDVMEFKAGDIIPVELPEHI--VLRVEDLPTYRCKLG 304 Query: 291 RVGKNYTIRITDRI 304 + N +RIT++I Sbjct: 305 KTRDNLALRITEKI 318 >gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33] gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 316 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQGVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] Length = 339 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%) Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 +G V ++E L GA R+L++VE +LA+ + +++ L ++T + Sbjct: 120 LGAERKFVFAMVEGLFGADGSEPFYEEERALTSVEIRLARLVLDRLAKALQISFASTAGA 179 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + L+ R + + +T S ++ PQ +L +L++ Sbjct: 180 ALALDPVEPKPEPAGAARRSGSALIC--RFRLTAFGAESEALVTFPQ-GVLDPLREALAA 236 Query: 217 QNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + QS D + +A++ V++ + + TL DV ++GQ++ Sbjct: 237 DPATTIQSADPL--WAQRMKDRITATEVSLTAVMERRDLTLGDVARFEVGQIVELPVSPT 294 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 L G+ ++ CE+G+ YTIRI D ++ +Q+ + + L Sbjct: 295 GLIALECEGQTLFWCEIGQKDGAYTIRIADFVDKEQEFIDDMLG 338 >gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1] gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94] gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 316 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330] gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445] gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686] gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94] gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1] gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1] gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis M292/94/1] gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330] gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 316 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis M163/99/10] gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 316 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2] gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2] Length = 253 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 102/239 (42%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 10 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 69 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T S P D D ++ LS F T ++ +T Sbjct: 70 IANLLAGHLAGALDRVFNTG-SSQPLFAPGDCIDTADFDRDNFELSRLF--TCHIAVTAA 126 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 127 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 182 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 183 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 241 >gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 311 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/302 (19%), Positives = 114/302 (37%), Gaps = 14/302 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ +++ RL G GD + + + + + L IF+ K + + + + + Sbjct: 10 PMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLA 69 Query: 72 HI---IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + SF V + + +L++++L LG + P +R S Sbjct: 70 ELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSIL---LGGDPDIPPSPLDRPPS 126 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 +E +A+ + LN S + P + K+ R + I + Sbjct: 127 RIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPGDFKRFLVR--DGPGIRIAFS 184 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + V+ +P +LK + + + Q + F + + V + I Sbjct: 185 LGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQR---FGEEVRRSTVQVTATIP 241 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L K L + LK GQV+ LS + ++ CE GR+G+NYT+RI R FD Sbjct: 242 LTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI--RQPFD 299 Query: 308 QK 309 + Sbjct: 300 DR 301 >gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] Length = 348 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 105 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 164 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T+ S P D D + LS F T + +T Sbjct: 165 IANLLAGHLAGALDRVFNTS-SSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 221 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 222 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 277 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 278 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 336 >gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1] gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1] Length = 316 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 16/237 (6%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 +A ++ L++ +T S P ID + + L + T + +T Sbjct: 133 IANLLAGHLADALDRVFNTGS-SQPLFAPGDCIDTADFDRDNLELSRLFTCRIAVTAAGK 191 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRINL 248 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 192 TGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFMQQ 247 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 248 GSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513] gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 316 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMLLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3] gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3] Length = 342 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 19/255 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ID + + TL+DV+ K G VIP E IL Y C++G Sbjct: 246 LRDEIMDVDVGIDATVVEHQVTLRDVLEFKAGDVIPVELPEHI--ILKVEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRIN 305 + +N ++I ++I Sbjct: 304 KTKENLALKICEQIQ 318 >gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] Length = 400 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 26/271 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V S W + + L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVDSTLIYSIIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 T ++ R +T+E L KR I VL+ + SP + ID L+ N Sbjct: 190 GNTQLRVEGRPYTTIETNLVKRLI---EVVLSDAEQAFRPLSPVR---FTIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 +R +N + + + + +E+ + L++P T+ ++ L+ + K Sbjct: 244 AAISRPANAAIL-VKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR------ 296 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP FA + Q V +D + LK ++ LK+G +P R + Sbjct: 297 DPVWEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAVRCGSTM 356 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 357 LTEGRMGRVGDRVAIRVTKNLRKPNTTLAMF 387 >gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 41/253 (16%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +I TS + + + S + + + A+ W S +L+ ++LE +LG T Sbjct: 54 EIELTSLEYMPYEDAMESIQSPSLIAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRAT 113 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQIS-AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL- 176 + R L+ +E+KL +R +A++S L QC+ Q+ SP +DI L+ N + Sbjct: 114 TQEWKPRGLTAIEQKLGRR-LAELSLKGLAQCL---QDVSPVQ---FDIQSLESNPRSVM 166 Query: 177 ---SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-- 231 + M+M E+ + L++P TL + S L PF Sbjct: 167 LAAPRTATVLVRMHMQFEDRSGHMALVLPYGTL--------------DEVSAQLAQPFLG 212 Query: 232 ARKTYQLNVNIDTRINLKKTT-------------LKDVVTLKIGQVIPFLHREKTCAILS 278 R N D + TT L +V+ K GQVI T + Sbjct: 213 GRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVGM 272 Query: 279 ANGKEIYSCELGR 291 N + ++ G+ Sbjct: 273 VNAQPMFQAAFGQ 285 >gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] Length = 341 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 74 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 133 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + DYL N ++ Sbjct: 134 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMDV-EFDYLDSEVNPAMA 185 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 186 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 244 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K + V +D I K+ +LKDV+ K G +IP E +L Y C+LG Sbjct: 245 LKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPE--YIVLRVEDLPTYRCKLG 302 Query: 291 RVGKNYTIRITDRI 304 R +N + I ++I Sbjct: 303 RSRENLALNIREKI 316 >gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] Length = 342 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + E DYL N ++ Sbjct: 135 HAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQ--------FDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ID I K TL++V+ K G VIP E IL Y C++G Sbjct: 246 LRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVELPEHI--ILKVEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 + N ++I ++I Sbjct: 304 KAKDNLALKICEKI 317 >gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] Length = 401 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F ++S V S W + ++L+ ++++ LLG Sbjct: 132 VEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRG 191 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 ++ ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 192 QSSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVS------FSIDRLETNPRFA 245 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 246 AITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------D 298 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Q + +D + + L+ ++TLK+G +P R + + Sbjct: 299 PIWESHLATEIAQAQIAVDAVLYEAEIPLRQLMTLKVGDTLPLEMRPDASVAVRCGSVTL 358 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 359 TEGRMGRVGDRVAIRVS 375 >gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28] gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90] Length = 316 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P + VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. 16M] gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. Rev.1] gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str. Ether] gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str. 16M] gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 316 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P + VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC2047] Length = 329 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 22/213 (10%) Query: 102 NLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 +LV+ L++ G H+ + R + E+++ ++ ++Q+ + Q T + Sbjct: 125 DLVVNLVDRFFGGGVHDN--AIGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMD----- 177 Query: 161 EDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 D +YL N +E V + IE + IP ++L+ +L Sbjct: 178 ---IDFEYLSNEENPAMIKAISPSEVVVLSTFEIKIEEKGGRIQVAIPY-SMLEPVREAL 233 Query: 215 SSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S + +N+ D + R +V I R+ +K TL++++ K G VIP E Sbjct: 234 DSGVQVDNEYTDGNWAEALQRDLRYASVPISCRVAERKITLREILNFKAGDVIPIDMPE- 292 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +IL ANG IY +G ++ ++I +I+ Sbjct: 293 -SSILMANGVPIYEAAVGASNEHLALKIKRQID 324 >gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] Length = 342 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-QFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ID I K TLK V+ K G VIP E IL Y C++G Sbjct: 246 LRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVELPEYI--ILKVEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R +N ++I ++I Sbjct: 304 RTKENLALKICEQI 317 >gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] Length = 317 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 11/220 (5%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 W S ++ LV +++E + GA +R +E+K++ +++ L+Q Sbjct: 92 WGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGMLEQKISALLAGHLASSLDQVF 151 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + ++ + D + S F I++ T L++P+ T Sbjct: 152 AANGQALFTAGECTDTAEFDRENFERSRLFACRIDV--TAAGKTGQVHLLLPRSTHKPMQ 209 Query: 211 LISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + NQ+ DP +A+K Q + ++ I TL + L+IGQV+ Sbjct: 210 DAVAAFLRRPMNQT----DPSWAKKMRQEVSRARIELEAFIQQGSMTLDALSMLEIGQVL 265 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L A ++++ C LG+ G ++T+++ D +N Sbjct: 266 KLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVN 305 >gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] Length = 401 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F ++S V S W + ++L+ ++++ LLG Sbjct: 132 VEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRG 191 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 192 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FSIDRLETNPRFA 245 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 246 AITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------D 298 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Q + +D + + LK ++ LK+G +P R + + Sbjct: 299 PIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMALKVGDTLPLDMRPDASVAVRCGSVTL 358 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 359 TEGRMGRVGDRVAIRVS 375 >gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 403 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/261 (19%), Positives = 109/261 (41%), Gaps = 26/261 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +FS ++S V S W + ++L+ ++++ LLG Sbjct: 133 NVEVSLDRITSVRFSDYMNSIPLPAVLSVFKAEEWENFGLATVDSSLIYSMIDVLLGGRR 192 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 193 GQTSMRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FKIDRLETNPRF 246 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 R +N + + +++ +E+ + L++P T+ ++ L+ + K Sbjct: 247 AAITRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMGEKFGR------ 299 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP A + Q +++D + + LK +++LK+G +P R + Sbjct: 300 DPIWEGHLATEITQAQISVDAVLYEAELPLKQLMSLKVGDTLPLEMRPDALVSVRCGSVI 359 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + +GRV IR+T ++ Sbjct: 360 LTEGRMGRVADRVAIRVTKQL 380 >gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] Length = 331 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 25/226 (11%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 W F L LLE+LLG + + L RSL+ +E + + TIA LN+ Sbjct: 116 WRGVFIF--KEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTF 173 Query: 151 STTQ---------ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 + + ESS L I+ + + + L+ FV T N N+ VL++ Sbjct: 174 APLEKIESSLVKIESSTRL-----INIVPGDASVLAAHFVVTGN------NLEDEIVLVL 222 Query: 202 PQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P L LK + S SE+Q ++ Q++V++ ++ T++D++ Sbjct: 223 PMAMLDPLKEKMRE-GSAVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNF 281 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G ++ + + A G+ + G +RI+ RIN Sbjct: 282 KVGDILDLGCAPSSPLQVRAAGQPKFQAIAGTHQGKKAVRISGRIN 327 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 36/289 (12%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + G L L + + M LD +++ + I+S + S Sbjct: 52 RTLELIHETYGRLVATSLSSLVRGSMRLD----FSAIDQVPYEEFINSLIPPAMIVIISW 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + N+ + L++ LLG S +P R+ + +E L + + + L + Sbjct: 108 ENTGLSMVLEMNLNITLALVDRLLGGS--GLPPPSPRAPTDIENALIAKLVDRHLVALEE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIP 202 T S + ++ TN +NE V I M++ I +++ L IP Sbjct: 166 AWRTVYPVS--------LTFVGTETNPEFAQIVPANEMVVLITMDIGIGDLSGIMSLAIP 217 Query: 203 QETLLKTTLISLSSQN-----KSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TL 253 +LL+ + LS+Q K+EN E YQ LNV ++ ++ L L Sbjct: 218 Y-SLLEPIVNHLSAQRFFVKKKAENDIE------REYVYQHVLNVMVNLQVCLGHMHIPL 270 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +D++ L++G + + + K+ + GRVGKN I+IT+ Sbjct: 271 RDLINLRVGDTLLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITE 319 >gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] Length = 342 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + + I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFNPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMD-VEFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 187 NIVSPTEVVVISSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K +NV +D + + TLKDV+ LK G +IP E IL + C+LG Sbjct: 246 LKDEIMDVNVGLDATVVEHQITLKDVMELKQGDIIPVELPEHI--ILRVEDLPTFRCKLG 303 Query: 291 RVGKNYTIRITDRI 304 + N +R+ +I Sbjct: 304 KARDNLALRVIQKI 317 >gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] Length = 400 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 26/271 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V S W + + L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSTLIYSIIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 T ++ R +T+E L KR I + A Q + ID L+ N Sbjct: 190 GNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVR------FTIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 +R +N + + + + +E+ + L++P T+ ++ L+ + K Sbjct: 244 AAISRPANAAIL-VKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR------ 296 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP FA + + V +D + LK ++ LK+G +P R + Sbjct: 297 DPVWEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAVRCGNTM 356 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 357 LTEGRMGRVGDRVAIRVTKNLRKPHTTLAMF 387 >gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] Length = 357 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 20/271 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + ++S Q KF +H+ + I LV L++N G Sbjct: 70 MRRNAEVSINGVQMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFG 129 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ I +L +ES + D + +YL Sbjct: 130 GDGRFQAKIEGREFTPTERRI-------IQLLLKTVFEDYKESWAPVMD-VEFEYLDSEV 181 Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 N ++N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 182 NPAMANIVSPTEVVVVSSFHIELDGGGGDFHITLPY-SMIEPIRELLDAGVQSDKQDTDM 240 Query: 228 IDPFARKTYQLNVNID--TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 A + ++V +D T + ++ TL+D++ +K G +IP E ++ + Sbjct: 241 RWAKALQDEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMPEHL--LVRIEDLPTF 298 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +LGR G N +RI +RI KS KN L Sbjct: 299 RGKLGRKGDNVAVRIEERIP-RPKSYKNELQ 328 >gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 400 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/258 (20%), Positives = 104/258 (40%), Gaps = 26/258 (10%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V S W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174 +T ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 190 GQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 R +N + + + + +E+ + L++P T+ ++ L+ + K Sbjct: 244 AAITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------ 296 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP A + Q + +D + + LK ++TLK+G + R + Sbjct: 297 DPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMTLKVGDTLALEMRPDASVAVRCGSVT 356 Query: 284 IYSCELGRVGKNYTIRIT 301 + +GRVG IR++ Sbjct: 357 LTEGRMGRVGDRVAIRVS 374 >gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] Length = 375 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/273 (22%), Positives = 113/273 (41%), Gaps = 27/273 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++ S +S + S + F+ + + S +++ +++ LLG E Sbjct: 90 VEVKLISVDQLTYSEFVFSLENPTCFNLLESKGLEGHLILDLSPSIIFPIVDRLLGGGKE 149 Query: 118 TIPQLYNRSLSTVEKKLAKR-TIAQISAVLNQ----C---ISTTQ-ESSPNLEDFYDIDY 168 +IP + +R L+ +E +L R T+ I+ + N C + TQ ES+P L Sbjct: 150 SIPSIPSRPLTEIELQLVSRITLLVINGLENAWHNVCSLGLKVTQIESNPQLVQIVP--- 206 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228 NE + ++ +T+ V L IP T+ + LSS S Q + L Sbjct: 207 --------PNEVIVLVSFEITMGEVRGIMNLCIPFNTIEPLSG-KLSSDTWSAYQKKGL- 256 Query: 229 DPFARKTYQLNVN---IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP R + ++ + +NL T T +D+ L +G VI H ++ + G Sbjct: 257 DPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDVIMTEHPKEDGLEVVVEGCP 316 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + G V IR+T + + L+ L Sbjct: 317 MFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349 >gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] Length = 401 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 108/254 (42%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +FS ++S V W + ++L+ ++++ LLG Sbjct: 131 NVEVSLDRITSVRFSDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 190 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 191 GQAAIRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVA------FSIDRLETNPRF 244 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 245 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 302 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q ++++D + + L+ ++ L++G +P R + + Sbjct: 303 -GHLATEIGQADISVDAVLYEAEVPLRQLMALQVGDTLPLDLRADALVAVRCGSVTLTEG 361 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 362 RMGRVGDRVAIRVT 375 >gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] Length = 342 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + +YL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMD-VEFEYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 233 RKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V + +N+ + TL+DV+ K G +IP E ++ G Y C++G Sbjct: 246 LRDEIMDVQVGFDVNVVEHEVTLRDVMGFKAGDIIPIDLPEHI--MMRIEGLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 + N ++I+++I Sbjct: 304 KSRDNLALKISEKI 317 >gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13] gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 316 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T S P D D + LS F T + +T Sbjct: 133 IANLLAGHLADALDRVFNTGS-SQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 189 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 190 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 245 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ A ++++ C LG+ G ++T+++ D +N Sbjct: 246 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 348 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 81 EVSINGVQMIKFGEYVHTLFVPTSLNMVKFSPLKGTGLITMEARLVFILVDNFFGGDGRF 140 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + +YL N ++ Sbjct: 141 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMD-VEFEYLDSEVNPAMA 192 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D A Sbjct: 193 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDKRWSMA 251 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K + V ID I ++ LKDV+ + G +IP E +L Y C+LG Sbjct: 252 LKDEIMDIKVGIDATIVDQEIALKDVMKFRAGDIIPVDLPEHI--VLRVEDLPTYRCKLG 309 Query: 291 RVGKNYTIRITDRI 304 + N +RI ++I Sbjct: 310 KSRDNLALRIIEKI 323 >gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] Length = 348 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 105 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQK 164 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T S P D D + LS F T + +T Sbjct: 165 IANLLAGHLADALDRVFNTG-SSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 221 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 222 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 277 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ A ++++ C LG+ G ++T+++ D +N Sbjct: 278 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVN 336 >gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] Length = 332 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/259 (16%), Positives = 99/259 (38%), Gaps = 28/259 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +H+ + I LV L++N G Sbjct: 76 DVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q+ L++ + D +Y+ N ++ Sbjct: 136 -AKIEGREFTPTELRVVQMVLEQVFVDLHEAWKAVK--------LIDFEYINSEVNPSMA 186 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ ++ + ++ P +L L Q+ ++ + + Sbjct: 187 NIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIREILDAGL-----QSDTDERDDR 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + V+++ + + TL+++V LK+G +IP E I +ANG ++ Sbjct: 242 WVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTMPE--VHIATANGVPMFQ 299 Query: 287 CELGRVGKNYTIRITDRIN 305 ++G+ N +RI D ++ Sbjct: 300 AKIGQCNNNLALRILDYVD 318 >gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] Length = 400 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 106/254 (41%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVA------FSIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q +++D + + LK ++ L++G +P R + + Sbjct: 302 -GHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPLDLRADALVAVRCGSVTLTEG 360 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 361 RMGRVGDRVAIRVT 374 >gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q ++++D + + L+ ++ L++G +P R + + Sbjct: 302 -GHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEG 360 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 361 RMGRVGDRVAIRVT 374 >gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1] Length = 335 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +V+I+ I TL ++ L++GQV+ L + K +Y C LG++G N++I Sbjct: 257 HVSIEAFIQQGSMTLDELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGKMGTNFSI 316 Query: 299 RITDRINFDQKSLKNFLH 316 R+TD I+ +++ + +H Sbjct: 317 RVTDPIDEEKEMIDELVH 334 >gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] Length = 400 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q ++++D + + L+ ++ L++G +P R + + Sbjct: 302 -GHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEG 360 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 361 RMGRVGDRVAIRVT 374 >gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] Length = 331 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +I + Q KFS I + + I LV T+++N G + + Sbjct: 88 EIFISGIQVQKFSEYIQGLLVPTNLTIVRFNPLRGKALIVIDPRLVFTVVDNFFGGAGQF 147 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 Q R + E ++ + I I L + E D +Y+ N R + Sbjct: 148 YNQTEGREFTPTEMRVVRIIIDMIFKDLKEAWKPVME--------LDFEYVGAEINPRFA 199 Query: 178 N-----EFVTTINMNMTIE------NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N E + +++ +E N+A + ++ P LL + S S + Q+ Sbjct: 200 NIIGPGEIIVISTIHVELEGGGGDVNIAMPYAMLEPIRELLDA-ISSDSGEVDGGWQA-- 256 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + V+I++ + K T++DV+ LK G VIP + IL A G ++ Sbjct: 257 ---ALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIPIDMPD--TVILKAEGIPVFE 311 Query: 287 CELGRVGKNYTIRITDRI 304 ++G NY I+I D++ Sbjct: 312 GKVGISDGNYAIQIIDKV 329 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/255 (20%), Positives = 104/255 (40%), Gaps = 26/255 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S ++ + S N F+ SLS N ++ L++ LLG E Sbjct: 82 VEIEVVSVDQMTYAEFVLSLSNNVSFNVVSLSPLDGNAVFSLEPDIGFALIDRLLGGIGE 141 Query: 118 TIPQLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTT-----QESSPNLEDFYDIDY 168 + NR + +E+ + ++ + ++ + I + QESSPN+ Sbjct: 142 S--SNINRPFTDIEQSILLDVVRQAMEEMRSSWEPIIDISFEVVGQESSPNVVQIV---- 195 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---KSENQSE 225 +E V + + + +P +L+ L + + + +S+ +E Sbjct: 196 -------APSEIVVLVVFEVKLGETTGIINWCLPV-IVLEPVLNKIGTHDILARSKKATE 247 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 D I+ AR ++ V ++ R+ ++D ++LK G ++ + + NG E Y Sbjct: 248 DRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLLTLDKKVDDELPVFINGVEKY 307 Query: 286 SCELGRVGKNYTIRI 300 +LGR G N ++I Sbjct: 308 GVKLGRKGYNKAVKI 322 >gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] Length = 398 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 107/257 (41%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F+ ++S V + W + ++L+ ++++ LLG Sbjct: 129 VEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRG 188 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 189 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 242 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 243 AISRPANAAIL-VRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGR------D 295 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Q + +D + + LK +++L++G +P R + ++ Sbjct: 296 PIWEGHLATEIAQAELYVDAVLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSVRCGDVKL 355 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 356 SEGRMGRVGDRVAIRVS 372 >gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] Length = 333 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/262 (18%), Positives = 100/262 (38%), Gaps = 31/262 (11%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +H+ + I LV L++N G Sbjct: 76 DVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q+ L + + D +Y+ N ++ Sbjct: 136 -AKIEGREFTPTELRVVQMVLEQVFIDLKEAWKAVKA--------IDFEYINSEVNPSMA 186 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ ++ + ++ P +L L Q+ ++ + + Sbjct: 187 NIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIREVLDAGL-----QSDTDERDDR 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + V+++ + ++ TL+D+V L+ G +IP E IL+ANG ++ Sbjct: 242 WVRALQEDVMEARVDLEADLVRREVTLRDIVDLREGDIIPITMPEYN--ILTANGVPMFK 299 Query: 287 CELGRVGKNYTIRI---TDRIN 305 +LG++ N +RI DR N Sbjct: 300 TQLGQLNDNLAMRILGFVDRSN 321 >gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] Length = 335 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/291 (19%), Positives = 123/291 (42%), Gaps = 28/291 (9%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 KT+ I + G L +L + ++V + + +F ++ + N + + Sbjct: 53 KTLSIIYENYGRLLSSYLSGTLRSYCKVEV----LTIEEQRFFEYSNALESNVLMGVLDM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S ++ +++ LLG E +R + +E +L ++ + + ++ Sbjct: 109 KPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYEA--DRDYTDIEMQLLRQVVQTVCRLVGD 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL- 206 P DF ++ + + +S NE V + +++ I +V + IP L Sbjct: 167 AWENVYALQP---DFVRLENNSRQSQLVSPNETVVIVMLDVEIRDVVGNISFCIPYVILE 223 Query: 207 -----LKTTLISLSSQNKSENQS---EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 L T S++K+ ++ E+L+ RK Q+ + + + + TL + + Sbjct: 224 PVLEHLNTRYWFTESRSKTGDEQASRENLL----RKVRQIPIELRAVLGTARITLHEALQ 279 Query: 259 LKIGQVIPF-LHREKTCAILSANGKE-IYSCELGRVGKNYTIRITDRINFD 307 L++G V+P H ++ A+ S GKE + LG N IR+ DRI + Sbjct: 280 LQVGDVVPLDQHLDEKAAVYS--GKEKWFEGTLGTWHNNRAIRV-DRIMLE 327 >gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C] Length = 322 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V I+ I TL ++ TLK+GQ++P L + K +Y C LG++G +++IR Sbjct: 245 VRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIR 304 Query: 300 ITD 302 +T+ Sbjct: 305 VTN 307 >gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13] Length = 332 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 17/271 (6%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ + IS S + I S + + + ++ + + Sbjct: 63 FARLLTTYFSAQLRTYIQISVASVDQLPYEEFIRSIPKMTILNVFEVAPLEGRVVLEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + +L+ LG + ++ SL+ +E KL + T + P L Sbjct: 123 TIAYAMLDRQLGGKGTGVNKV--DSLTEIETKLMTTLFEGAIENFGEAWDTIADIQPFLS 180 Query: 162 DFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS- 216 D L+ N L NE V I+MN+TI V + IP +L+ + LS+ Sbjct: 181 D------LEVNPQFLQLVSPNETVIVISMNITIGEVTGMINICIPH-VVLEPVIPKLSAH 233 Query: 217 ---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + K++ + + I + + + T + + + D++ + IG V+P + Sbjct: 234 YWMEEKNKVRQDHEIATLEKAIRATALTVTTELGHSEISFSDLLNITIGDVLPLQQKIDE 293 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I+ + K + ++G+V KN ++I ++I Sbjct: 294 PIIVKVDNKPSFYGQVGQVKKNMAVQILEKI 324 >gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC BAA-1498] Length = 322 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V I+ I TL ++ TLK+GQ++P L + K +Y C LG++G +++IR Sbjct: 245 VRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIR 304 Query: 300 ITD 302 +T+ Sbjct: 305 VTN 307 >gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 404 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 26/261 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +FS + S V S W + + L+ ++++ LLG Sbjct: 134 NVEVSLDRITSVRFSDYMSSIPLPAVLSVFKAEEWENFGLATVDSALIYSMIDVLLGGRR 193 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174 + ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 194 GQASMRVEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FKIDRLETNPRF 247 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 R +N + + +++ +E+ + L++P T+ ++ L+ + K Sbjct: 248 AAITRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMGEKFGR------ 300 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP + + Q +++D + + LK ++ LK+G +P R + Sbjct: 301 DPIWEGHLSTEIAQAEISVDAVLYEAEIPLKQLMRLKVGDTLPLELRADALVAVRCGNVT 360 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + +GRV IR+T ++ Sbjct: 361 LTEGRMGRVADRVAIRVTKQL 381 >gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] Length = 331 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 11/246 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS Q ++S + F+ ++ N I C +L+ +++ L G + Sbjct: 78 EISVGPVQVQRYSAFLRELAVPTSFNIMAVRPLRGNGMIVCEPSLIFGVIDTLYGGIGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + IS + LE Y ++ ++ Sbjct: 138 QSRIEGRDFSATEQRIINRLVDVISDEYKKAWRGIYP----LELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + + I ++ + IP TL ++ L S S+Q S ++ R+ Sbjct: 194 PSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIRDVLYS-STQGDSMEVDRRWVNVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +V + + TT+++++ +K+G I + + A +S G ++ C+ G Sbjct: 253 IQAADVTLVAELARANTTVEELLAMKVGDFIELERQPRIEATIS--GVPVFECQYGTHNA 310 Query: 295 NYTIRI 300 Y IRI Sbjct: 311 KYAIRI 316 >gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] Length = 341 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 74 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 133 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 134 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 185 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 186 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 244 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K ++V ID I + TLKDV+ K G VI E ++ Y C+LG Sbjct: 245 LKDEIMDVDVGIDATIVEHQVTLKDVMEFKQGDVITVELPEHI--VMRVEDLPTYRCKLG 302 Query: 291 RVGKNYTIRITDRI 304 N +RI + I Sbjct: 303 TARDNLALRICETI 316 >gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223] gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223] Length = 342 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D I + TLKDV+ K G +IP E ++ Y C++G Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 304 RSRDNLALKIHEKI 317 >gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175] gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175] Length = 342 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D I + TLKDV+ K G +IP E ++ Y C++G Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 304 RSRDNLALKIYEKI 317 >gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678] Length = 342 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D I + TLKDV+ K G +IP E ++ Y C++G Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 304 RSRDNLALKIHEKI 317 >gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] Length = 399 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F+ ++S V + W + ++L+ ++++ LLG Sbjct: 130 VEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRG 189 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 190 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 243 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 244 AISRPANAAIL-VRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGR------D 296 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + + + +D + LK +++LK+G +P R + + Sbjct: 297 PIWEGHLATEIAKAEMYVDAVLYEADMPLKQLMSLKVGDTLPLDIRPDAMVSVRCGDVTL 356 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 357 SEGRMGRVGDRVAIRVS 373 >gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3] Length = 322 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V+I+ I TL ++ TLK+GQ++P L + K +Y C LG++G +++IR Sbjct: 245 VHIEAFIQQGSMTLNELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKIGTSFSIR 304 Query: 300 ITD 302 +T+ Sbjct: 305 VTN 307 >gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] Length = 314 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + E SE+L D R +NV I+ R TL+D+ L++G V+ + + Sbjct: 220 RDERWSENLYDNIVRTEVAVNVKIEAR----GFTLEDIANLEVGDVLGLPIAPTSPIRIE 275 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + G+ ++ C LG+ +YT+R+ D + Q ++N L Sbjct: 276 SEGRTLFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312 >gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73] gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73] Length = 322 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V I+ I TL ++ LK+GQV+P + EK + S N K +Y C LG++G +++I Sbjct: 245 VRIEAFIQQGSMTLNELSILKVGQVLPLPANAEKQIRLRSGN-KSLYKCSLGKIGTSFSI 303 Query: 299 RITD 302 R+T+ Sbjct: 304 RVTN 307 >gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] Length = 374 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/259 (20%), Positives = 111/259 (42%), Gaps = 22/259 (8%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S + S +F ++S + + W + +NL+ ++++ LLG Sbjct: 92 NVEVSLDNVSSIRFGDYLNSIPLPAILAVFRAKQWDNYGMFTVDSNLIYSIVDVLLGGRR 151 Query: 117 ETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTN 174 T ++ R +T+E L +R I VL S + SP LE +D ++ N Sbjct: 152 GTAAMRIEGRPYTTIELNLVQR---MIEVVLQDVQSAFEPLSPVTLE----LDRMETNPR 204 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 + + + +E+ L++P TL ++ L+ + E D I Sbjct: 205 FAAIARPANAAILVKLRVDMEDRGGRIELLLPYATLEPIRELLLQMF---MGEKFGRDTI 261 Query: 229 --DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIY 285 A + + V ++ ++ ++ +L++V+ ++GQ + L+ AI L G + Sbjct: 262 WESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTL-MLNSGPEGAIDLRCGGVRLG 320 Query: 286 SCELGRVGKNYTIRITDRI 304 ++GRVG + +R+ I Sbjct: 321 KGKMGRVGNHVAVRVEQAI 339 >gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] Length = 384 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 50/261 (19%), Positives = 111/261 (42%), Gaps = 26/261 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S + QS +F ++S + S W + + ++++ ++++ LLG Sbjct: 133 VEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYSIVDVLLGGRRG 192 Query: 118 TIP-QLYNRSLSTVEKKLAKR----TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 T ++ R +T+E+ L +R +A +SA + T + D L+ N Sbjct: 193 TAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVT----------FRFDRLETN 242 Query: 173 T-----NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSE 225 +R SN + + + +E+ ++IP TL ++ L+ + K S Sbjct: 243 PRFATISRPSNAAIVA-KLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDS- 300 Query: 226 DLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + + A + + V +D ++ L ++++++G I F + L + Sbjct: 301 -IWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQLRCGDVPM 359 Query: 285 YSCELGRVGKNYTIRITDRIN 305 + ++GR G+N IR+ + N Sbjct: 360 FDGKMGRKGQNIAIRVDSKHN 380 >gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] Length = 340 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +I P +L L Q+ S+ + + ++ Q NV +DT K LKD+ Sbjct: 217 YSMIEPIREMLDAGL-----QSDSDERDDRWVNSLREDIMQANVRLDTNFVQSKILLKDI 271 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 V LK G VIP E+ I +ANG ++ ++G+ N+ +++ + I Sbjct: 272 VDLKEGDVIPIELPEEY--ITNANGVPMFKVDIGQSNGNFALKVNEVI 317 >gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92] gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92] Length = 325 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 20/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q K+ IH+ + ++ LV L++N G Sbjct: 80 DVTVGGVQVMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIMDAKLVFKLVDNFFGGDGRH 139 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E +L + + Q L + + +E S D+L N ++ Sbjct: 140 A-KIEGREFTPTETRLIHKALEQFFLDLEEAWNPVKELS--------FDHLGHEMNPAMA 190 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP 230 N E V + +E + F + +P L ++ L+S Q+ + + E Sbjct: 191 NVINPTEVVVVSTFQVDLEGGSGEFHVAMPYSMLEPIRDLLVS-GFQSGEDEKDERWQVA 249 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 R + ++ + ++ TL+DVV L+ G +IP E L AN +Y+C +G Sbjct: 250 LQRDILMAGLPLEMTLAQQEMTLRDVVDLQAGDIIPIELPETFE--LKANKVPVYNCTMG 307 Query: 291 RVGKNYTIRITDRI 304 N +++ ++I Sbjct: 308 VSRGNLAVKVVNQI 321 >gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] Length = 281 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 51 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 103 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 104 --VEFEYLDSEVNPSMANIVSPTEVIVVCSFHIEVDGGGGDFHMVMPY-SMVEPIRELLD 160 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V I+ R+NL + L+D++ L++G +IP E Sbjct: 161 AGVQSDKMETDVRWSSALRDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMPEH- 219 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 AI+ Y ++GR G ++I+ +I Sbjct: 220 -AIMFVEELPTYRVKMGRSGDKLAVQISQKI 249 >gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] Length = 347 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G + + R + E+++ +R + + + S + S LE Sbjct: 121 NLVFMVVDNLFGGDGRFLTKSEGREFTNTEQRIIQRMLR----LAIEAYSDSWRSVYPLE 176 Query: 162 DFYDIDYLK-------KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 I +L+ N NE V N N+ + N+ASSF + +P + L+ LI Sbjct: 177 ----ISFLRSEMQAKFANITNSPNEIVVNTNFNLEVGNLASSFQICMPYSMIEPLRDLLI 232 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S + ++Q A + V + + + DV L++G ++P E Sbjct: 233 NPLS-DGHQDQDSTWTRRMAGEIRHSTVELVADFADLPSRIADVTALEVGDILPLELPET 291 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300 A +G + CE G +R+ Sbjct: 292 VTA--KVDGVPVMECEYGSQHGQRALRV 317 >gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586] gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586] Length = 349 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200] Length = 343 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDACVVEHELTLKDVMNFKAGDIIPVELPEYI--MMKIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] Length = 349 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603] Length = 349 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 269 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 3/166 (1%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 82 SLNGIASGRFGEFLDAYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPP 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R+ S +E ++A+ Q+ L ++ LE + R SN+ Sbjct: 142 VEDERNFSAIELRIAQMVFEQVGKALESSFGLVSQTPFRLERM-ETRMEFAVIGRRSNKA 200 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 V + + N L+IPQ T+L +LS E+ + D Sbjct: 201 VQAKFLLQAL-NRGGEMFLVIPQ-TVLNPLRPALSKVLTGESAARD 244 >gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans] gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] Length = 332 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 17/206 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV L++NL G ++ R + E+++ +R I ++ + + + E +E Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQR----ILGIIFETYAKSWEPVYPVE 175 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214 +Y++ N NE V + + V+ +P + L++ Sbjct: 176 ----FEYIRSEMNTQFANIATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTS 231 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S Q ++ + I ++ V I + K TL D++ +KIG +I E+ Sbjct: 232 SMQGETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPEQVT 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 A +G + C G++ Y +R+ Sbjct: 292 A--EVDGVPVMECSYGKLNGQYALRV 315 >gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] Length = 349 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEDLPTYRVKMGRSGEKLAVQVSEKI 319 >gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] Length = 332 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 18/252 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF IH+ + + LV L++N G Sbjct: 76 DVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VLNQ +E+ + + +YL N ++ Sbjct: 136 -AKIEGREFTPTETRI-------VQMVLNQVFHDMKEAWHAVLQV-EFEYLSSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ +P + ++ Q+ ++ E ++ Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNAL 246 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++NV I+T + ++ +L+D+ +K G VIP E ++ANG IY LG Sbjct: 247 QEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVEIPEHLT--VTANGIPIYKATLGT 304 Query: 292 VGKNYTIRITDR 303 +RI DR Sbjct: 305 RDGKLALRIHDR 316 >gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4] Length = 349 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] Length = 300 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 21/255 (8%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF ++ + + LV L+EN G Sbjct: 28 EVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 87 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ I +L + +E+ SP + + +YL N + Sbjct: 88 HARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG--VEFEYLDSEVNPSM 138 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E + + ++ ++ F +++P ++++ L + +S+ D+ Sbjct: 139 ANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLDAGVQSDKMETDVRWST 197 Query: 232 ARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ R+NL + L+D++ L++G VIP E A++ Y ++ Sbjct: 198 ALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH--AVMFVEELPTYRVKM 255 Query: 290 GRVGKNYTIRITDRI 304 GR G+ ++++++I Sbjct: 256 GRSGEKLAVQVSEKI 270 >gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341] gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341] Length = 349 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 21/255 (8%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF ++ + + LV L+EN G Sbjct: 77 EVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 136 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ I +L + +E+ SP + + +YL N + Sbjct: 137 HARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG--VEFEYLDSEVNPSM 187 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E + + ++ ++ F +++P ++++ L + +S+ D+ Sbjct: 188 ANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLDAGVQSDKMETDVRWST 246 Query: 232 ARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ R+NL + L+D++ L++G VIP E A++ Y ++ Sbjct: 247 ALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH--AVMFVEELPTYRVKM 304 Query: 290 GRVGKNYTIRITDRI 304 GR G+ ++++++I Sbjct: 305 GRSGEKLAVQVSEKI 319 >gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771] Length = 47 Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 29/40 (72%) Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++ Sbjct: 8 VSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47 >gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 15/224 (6%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQL----YNRSLSTVEKKLAKRTIAQISAVL 146 W ++ LV +++E + GA + +R +E+K++ ++ L Sbjct: 92 WGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKISALLAGHLAKSL 151 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 +Q + ++ + D + S F I++ T L++P+ T Sbjct: 152 DQVFAGNGQTLFAAGECIDTAEFDRENFERSRLFACRIDV--TAAGKTGRVHLLLPRSTH 209 Query: 207 LKTTLISLSSQNKSENQSEDLIDP-FARK----TYQLNVNIDTRINLKKTTLKDVVTLKI 261 + + NQ+ DP +A+K + + ++ I TL + L+I Sbjct: 210 KPMQDAVAAFLRRPMNQA----DPSWAKKMRHEVSRARIELEAFIQQGSMTLDALSMLEI 265 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 GQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 266 GQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVN 309 >gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] Length = 343 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] Length = 343 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1] gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1] Length = 343 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMRIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] Length = 349 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFIEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1] gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1] Length = 332 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 53/269 (19%), Positives = 106/269 (39%), Gaps = 13/269 (4%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V I+ S F + S + + + + + + + Sbjct: 63 FARILTTYFSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFDVPPLDGHILMEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ +++ ++G I ++ N L+ +E K+ + L S E P L Sbjct: 123 NIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLRDAWSNIAEIDPMLS 180 Query: 162 DF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +F + +L+ + NE V I+MN TI + +IIP +L+ + LS Sbjct: 181 EFEVNPQFLQMVS---PNETVVVISMNTTIGETSGMINIIIPH-VVLEPIIPKLSVSYWM 236 Query: 221 ENQSEDLIDP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + +++D IDP ++ V I + T+ D + L IG VI R Sbjct: 237 QTKNKD-IDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDVIQLNKRIDAPL 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + ++ + G + K ++I D + Sbjct: 296 TIKVGEIPKFTAQPGELNKRLAVQILDSL 324 >gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] Length = 339 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 47/256 (18%), Positives = 97/256 (37%), Gaps = 22/256 (8%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +H+ + I LV L++N G Sbjct: 76 DVSVGGVQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDARLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT---------QESSPNLEDFYDIDYL 169 ++ R + E ++ + + Q L + E +P+L + + Sbjct: 136 -AKIEGREFTPTELRVVQMVLNQAFVDLGEAWKAVFPVSFEYVHSEVNPSLANI-----V 189 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229 + + + F ++ ++ + +I P +L L Q+ SE Q E + Sbjct: 190 SPSEVVVVSTFHIELDGGGGEMHITVPYSMIEPIREVLDAGL-----QSDSEEQDERWVR 244 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 V+++ + + TL+D+V LK G +IP + +++ANG ++ +L Sbjct: 245 ALREDVLAAKVDLECDVVRRDITLRDIVDLKEGDIIPVEFPD--YHVVTANGVPMFRTQL 302 Query: 290 GRVGKNYTIRITDRIN 305 G+ N ++I + I+ Sbjct: 303 GQHNDNLALKILEFID 318 >gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 352 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 42/254 (16%), Positives = 94/254 (37%), Gaps = 17/254 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++S Q KF +H+ + + LV L+EN G Sbjct: 81 AEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGR 140 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ + + I + + D +YL N + Sbjct: 141 YHAKIEGREFTPTERRIIQMLLKIIFEDYKDAWAPVMTA--------DFEYLDSEVNPAM 192 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDP 230 +N E + + ++ ++ F + +P L L+ Q+ E+ + Sbjct: 193 ANIVSPTEVIVVNSFHIELDGGGGDFHIAMPYSMLEPIRELLDAGVQSDKEDTDQRWSQA 252 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V + ++ K+ L+D++ +G +IP E+ ++ G + +LG Sbjct: 253 LEDEIMDVDVYLTAKLLEKQLPLRDMINWSVGDIIPVELPEEL--LVCVEGLPSFHAKLG 310 Query: 291 RVGKNYTIRITDRI 304 + N ++I DRI Sbjct: 311 KSNDNLALKIIDRI 324 >gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum JL354] Length = 339 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 14/258 (5%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 +++S S +F ++ + + + +W + NL+ +++ LLG Sbjct: 87 IEVSLDDIASVRFGDFMNRVPLPCMIAVFKVPAWQDYGLVTIEANLIYAVVDALLGGRKG 146 Query: 118 TIPQ-LYNRSLSTVEKKLAKRTIA----QISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 P+ + R+ +T+E L + I + S T E +E + Sbjct: 147 AAPRKIEGRAFTTIETTLVSKMIELVLREFSTAFEPIAPITMELE-RIETSPRFAAIAGP 205 Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDP 230 TN S T ++M + +F +++P TL + LS + E D D Sbjct: 206 TNVAS---AATFAVDM--DGRGGNFTILLPFATL-EPVRGKLSQRFMGEKLGGDNTWRDH 259 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V I T + ++ L DV +L+IGQ IPF + G + ++G Sbjct: 260 MRNEILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQIG 319 Query: 291 RVGKNYTIRITDRINFDQ 308 R + I I D I Q Sbjct: 320 RQRNHVAIGIVDTIKQGQ 337 >gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893] gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893] Length = 332 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 18/252 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF IH+ + + LV L++N G Sbjct: 76 DVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+Q +E+ + D +YL N ++ Sbjct: 136 -AKIEGREFTPTETRI-------VQMVLDQVFHDMREAWHAVLKV-DFEYLSSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++ E + Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGELHMALPYSMIEPIRDVLDAGVQSDIDDVDERWVSAL 246 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +NV I+T + ++ +L+D+ LK G +IP E L+ANG +Y +G Sbjct: 247 QEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVEIPE--LLTLTANGIPVYKATMGT 304 Query: 292 VGKNYTIRITDR 303 +RI DR Sbjct: 305 RDGKLALRIHDR 316 >gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 16/255 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S + S +F ++S + + W + + ++L+ ++++ LLG Sbjct: 134 VEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNYGLLTVDSSLIYSIVDVLLGGRRG 193 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T ++ R +T+E+ L +R + VL+ + SP + D L+ N Sbjct: 194 TAAMRIEGRPYTTIERNLVER---MVHVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 247 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R SN + + + +E+ L++P TL ++ L+ + K S Sbjct: 248 TISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSI-WET 305 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + V ++ ++ + L+DV+ K+G I + + L ++ + Sbjct: 306 HLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKILLNAQPNSPIDLRCGDVSMFRGRM 365 Query: 290 GRVGKNYTIRITDRI 304 GR G + IR+ D+I Sbjct: 366 GRKGPHIAIRVDDKI 380 >gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis HTE831] gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 330 Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 Y + L F ++ V+IS TS + I S + + + + N + + Sbjct: 62 YARMLTTFFATQLRSYVNISVTSVDQVPYEEFIRSIPKKTILNLYGMEPLDGNLIMEINP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ LL+ LLG TI + + +L+ +EK L + + L S+ E P LE Sbjct: 122 NIAYALLDRLLGGKGSTITK--DGNLTEIEKTLFMQMFEKAEDALRDAWSSVVEIEPVLE 179 Query: 162 DF 163 +F Sbjct: 180 EF 181 >gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] Length = 323 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 58/285 (20%), Positives = 116/285 (40%), Gaps = 22/285 (7%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ I + G L FL + + + + S + + I S + + S+ Sbjct: 52 RTLYMIHENYGRLVANFLSAYLRASIQVKI----VSVEQMTYEDFILSLPTPTLMNVFSM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N + +++ L G E + + NR L+ +E + +R +++ L+ Sbjct: 108 EPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLSY 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLL 207 S Q +P LE +++ + T +S NE V I M T+ L +P LL Sbjct: 166 SWSDIQNITPKLE---NMETNPQFTQAISPNETVAVITMGTTVGKYEGLLNLCLPY-MLL 221 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVTLKIG 262 + + LS+ + E P R ++ V + I + ++D + L++G Sbjct: 222 EPVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVG 281 Query: 263 QVIPFLHREKTCA---ILSANGKEIYSCELGRVGKNYTIRITDRI 304 VI EKT L +G + + G V K +++T+ + Sbjct: 282 DVITL---EKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323 >gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] Length = 368 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 33/226 (14%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFS-----QASLSSWSSNFFIGCSNNLVITLLENLLG 113 DI+ + ++ ++SF EN + +S I + L++TL+ ++LG Sbjct: 82 DITVMELRESRYYEYVNSFHENDCMTIIDTVMPEKGKFSVPMMIYVTPGLILTLMSHMLG 141 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY----L 169 + I N S VE L KR + I L S ++ +D+ + Sbjct: 142 GGEQVISTEENYRYSDVEMSLYKRILEYIIHALGDGFS----------NYLTVDFRPQKV 191 Query: 170 KKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK------ 219 ++N + + +E V +++N+ + +AS + I TLL+ ++ ++ Sbjct: 192 EENPSMIQEVGLDETVVLVHLNVDVTGIASEKIRICIPGTLLEQIFRTIDNRKHIARGFT 251 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 N SE ++ + L + T + T++D+ L++G VI Sbjct: 252 YSNNSEVIMSHLKETKFPLTAQLGT----VRLTMEDLYRLQVGDVI 293 >gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus C3-41] gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41] Length = 331 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 15/268 (5%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V I+ S F + S + + + N + + Sbjct: 63 FARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEVPPLDGNILMEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ ++L+ ++G S + + N L+ +E K+ + L + E P L Sbjct: 123 NIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLREAWENVAEIDPILV 180 Query: 162 DFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLISL 214 + L+ N L NE V I++N I + + IP E ++ + Sbjct: 181 E------LEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLEPIVPNLSVRY 234 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 Q ++ S + + Q + + + L T++D +T++IG VI + Sbjct: 235 WMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDVIQLEQKINDP 294 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 +L ++ + G+ GK I+I D Sbjct: 295 LLLKVGTLPKFTVQPGKQGKKLAIQIID 322 >gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] Length = 365 Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust. Identities = 57/272 (20%), Positives = 118/272 (43%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGVIEINPSIAFPMLDRLLGGKGE 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P +R S +E L +L +ST +E+ P +E + I+ + + N + Sbjct: 140 --PFDASREFSDIELSL-------FETILRVMMSTLKEAWGPVMEIYPTIESKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + + +I E +L + +++ +S KS N Sbjct: 191 QIVAQNEIVVMVVMEIIIGHSSGMMNICYPVISLEPILPKLASRDLMLNETSSKKSRNTE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ A+ VN++ + + T++DV+ L+IG V+ +S +GKE Sbjct: 251 LQVLLGGAK------VNVEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKER 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + ++G +I+I++ I+ ++ ++K L Sbjct: 305 FRGQIGLRRFRKSIQISEIIDTEKDAVKRALE 336 >gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 409 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 49/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S + +F ++S + W + ++L+ ++++ LLG Sbjct: 142 VEVSLDSMTNVRFGDYLNSIPLPAILGVFKAKEWDGFGLVTVESSLIYSIIDVLLGGGRG 201 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 + P ++ R +T+E L +R I I + Q P + ++ L+ N Sbjct: 202 SSPTRVEGRPYTTIESNLVRRMIEII------LLDAEQAFGPLSPVSFPLERLETNPRFA 255 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ +++P TL ++ L+ + K D Sbjct: 256 AISRPANAAI-MVELRIDMEDRGGKVEIVLPYATLEPIRDLLLQMFMGEKFGR------D 308 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Y V +D + L+ V+ L++GQ + F + + G ++ Sbjct: 309 PIWEEHLATEVYSSEVQVDAVLYENTIPLQRVLNLEVGQTLLFDTGPRDPVQVKCGGVQL 368 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +G V +I I+ ++ + +L F Sbjct: 369 TEGLMGHVDDRISIEISKKLKQPKMTLAAF 398 >gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] Length = 363 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 20/266 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF IH+ + I LV L++N G Sbjct: 78 EVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + + S +YL N ++ Sbjct: 138 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 189 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++L+ L + +S+ + DL A Sbjct: 190 NIVSPTEVVVISSFHIELDGGGGDFHIALPY-SMLEPIRELLDAGVQSDTEDTDLRWSKA 248 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V +D L + TLK ++ LK G +IP E + + ++G Sbjct: 249 LRDEIMDVEVDMSTQLLEVDLTLKQIMELKAGDIIPVEMPEHITVFVEE--LPTFRAKMG 306 Query: 291 RVGKNYTIRITDRINFDQKSLKNFLH 316 R N ++I+++I S+K+ LH Sbjct: 307 RSRDNVALQISEKIK-RPDSVKSELH 331 >gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619] gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619] Length = 322 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/253 (18%), Positives = 95/253 (37%), Gaps = 18/253 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+QC +E+ + + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFIDLKEAWQAIMPV-NFEYMNSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++V + + ++ L+DV+ ++ G VIP E +L ANG + LG Sbjct: 249 REDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVELPEHL--VLRANGVPSFKARLGS 306 Query: 292 VGKNYTIRITDRI 304 N ++I D I Sbjct: 307 HKGNLALQIIDPI 319 >gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1] gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1] Length = 349 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I ++ +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLMKTVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL K +L+D++ L+ G +IP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEKDVSLRDLMELQAGDIIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + + ++GR G+ ++I+++I Sbjct: 284 IDMPEN--ATMFVEELPTFRVKMGRTGEKVAVQISEKI 319 >gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] Length = 334 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 25/254 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+IS + K+S I + + + + +LV +++NL G Sbjct: 77 VEISVGPVRVSKYSEFIRNLVVPTNLNLVQFKPLRGTALMIFNPDLVFLMVDNLFGGDGR 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY--LKKNTN- 174 ++ R + E ++ +R +LN +S E Y I++ ++ N Sbjct: 137 FHTRVEGRDFTQTEHRIIQR-------ILNIVFEAYGKS---WEPVYPIEFEFIRSEMNT 186 Query: 175 -----RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--L 227 NE V + + + ++ +P ++++ L+S ++EN D Sbjct: 187 QFANIATPNEVVVAVTFAIELGQISGEMHFCMPY-SMIEPIKDLLTSSLQAENLEVDKRW 245 Query: 228 IDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 I R+ QL V I + + +L+D+V LK+G VIP A +G + Sbjct: 246 IR-LMRQQIQLAEVEIVADLGTAEVSLRDIVNLKVGDVIPLDIPPTIEA--KVDGVPVME 302 Query: 287 CELGRVGKNYTIRI 300 C G+ YT+R+ Sbjct: 303 CAYGKFNGQYTLRV 316 >gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7] Length = 322 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELGDSLVLRANGVPSFKVKLG 305 >gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] Length = 352 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P R S +E L + +L Q + +E+ +P E F ++D + + N + Sbjct: 140 --PYESTREFSDIELNL-------LDTILRQMMQNLKEAWAPITEIFPNVDVKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + L +I E++L + ++S +S KS N+ Sbjct: 191 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A+ VN+ + K TL++++ L++G ++ I++ +G+E Sbjct: 251 LQALLGGAK------VNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIINVDGREK 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + +G TI I + I ++ +K L Sbjct: 305 FLASIGLHRYRKTIEIKEMIKTEKDQVKEILE 336 >gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp. salmonicida A449] gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 356 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMDV-GFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ LK G +IP E ++ + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETDLTLRELMELKPGDIIPVEMPENL--LVYVEDLPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] Length = 329 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 56/289 (19%), Positives = 112/289 (38%), Gaps = 42/289 (14%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V S S + + IHS + + + F I + Sbjct: 62 FTRMLTTFFSAQLRTYVQFSVNSVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEVNP 121 Query: 102 NLVITLLENLLGA--------------SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 N+ +L+ LLG + QLY R+ ST A +IA+I A ++ Sbjct: 122 NISYAMLDRLLGGPGVEMDKIESFTEIEMRILTQLYKRAFSTYGD--AWESIAEIKAEMS 179 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E +P NE V I++ +TI V+ + + +P T + Sbjct: 180 AV-----EVNPQFLQLVS-----------PNETVVLISIGVTIGEVSGTINVCLPFVT-I 222 Query: 208 KTTLISLSS-----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + L LSS + N S+ +P + V + + + T D++ L++G Sbjct: 223 EPVLSKLSSHYWMQEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVG 282 Query: 263 QVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + L +E ++ N +++ ++G GK +++ R+ +++ Sbjct: 283 DCLALDQLAKEPLSVMVGEN--KVFKGQVGVSGKRMAVQVLHRVKEEEQ 329 >gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 322 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-- 176 ++ R + E ++ + + Q L + E + +Y+ N + Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPVMA 188 Query: 177 ----SNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 +E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDTLVLRANGVPSFKVKLG 305 >gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] Length = 347 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G VIP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++GR G+ ++I+++I Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319 >gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 2250] gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. B076] gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori str. 301020] gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 322 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E I+ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP E ++ ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSE--SLVMRANGVPSFKVKLG 305 >gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] Length = 349 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/218 (18%), Positives = 99/218 (45%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRI-------VQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R++L + +L+D++ L+ G +IP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVDLLEQDISLRDLMELQPGDIIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A++ + ++GR G+N ++++++I Sbjct: 284 VTMPEH--AVMFVEELPTFRVKMGRSGENLAVQVSEKI 319 >gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVLRANGVPSFKVKLG 305 >gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 347 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G VIP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++GR G+ ++I+++I Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319 >gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] Length = 308 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 16/218 (7%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYN----RSLSTVEKKLAKRTIAQISAVLNQ 148 S + +N + L+ LLG P L R L+ +E L + + A + Sbjct: 94 STALLQIPSNTTMLWLDYLLGG-----PGLERQENPRELTEIETALFRSLLDSSLADMRY 148 Query: 149 CISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S+ +P + Y+ +++ ++E V N ++T+ + S+ ++ + LL Sbjct: 149 AFSSITPMNPKIRGLQYNPQFVQAVP---ASEAVLVANYSLTVGDRVSAATMMFAADALL 205 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDVVTLKIGQV 264 + + S Q E+ F R +N V++ R N +D++ + +G V Sbjct: 206 NPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDV 265 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I H + G+ I G GK +++TD Sbjct: 266 IELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTD 303 >gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila] Length = 356 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 103/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMDV-GFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E ++ + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETDLTLRELMELRPGDIIPVEMPENL--LVYVEDLPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R +N ++ITD++ Sbjct: 305 RTKENVALKITDKL 318 >gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] Length = 349 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 98/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRI-------VQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G +IP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + + ++GR G+N ++++++I Sbjct: 284 ITMPEH--ATMFVEELPTFRVKMGRSGENLAVQVSEKI 319 >gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32] gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32] Length = 347 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G VIP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSSALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++GR G+ ++I+++I Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319 >gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida] gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1] Length = 322 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 18/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+QC +E+ + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFVDLKEAWQAIMPV-SFEYMNSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + ++ L+D++ ++ G VIP E +L ANG + LG Sbjct: 249 REDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHL--VLRANGVPAFKARLGS 306 Query: 292 VGKNYTIRITDRIN 305 N ++I D I Sbjct: 307 HKGNLALQIIDPIE 320 >gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198] Length = 357 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 112/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++V ++++ LLG E Sbjct: 79 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINPSIVFSMIDRLLGGKGE 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 T + R S +E L + +L Q + T +++ P E F +D + + N + Sbjct: 139 TYD--HQREFSDIELNL-------LDTILRQIMQTLKDAWGPVAEIFPSVDAKESSPNVV 189 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M M I + + L +I E +L + ++S +S KS N+ Sbjct: 190 QIVAQNEVVIMVVMEMIIGHSSGMLSLCYPVISLEAVLSRLGSRDLVLSETSSKKSRNKE 249 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A +++ + +L++++ L+ G +I ++ +GK+ Sbjct: 250 LQALIGGA------GISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVAIDGKDK 303 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + ++G TIRI + I ++ +K L Sbjct: 304 FLADIGLQRYRKTIRIKEAIRTEKDQVKEILE 335 >gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] Length = 322 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 18/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+QC +E+ + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFVDLKEAWQAIMPV-SFEYMNSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + ++ L+D++ ++ G VIP E +L ANG + LG Sbjct: 249 REDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHL--VLRANGVPAFKARLGS 306 Query: 292 VGKNYTIRITDRIN 305 N ++I D I Sbjct: 307 HKGNLALQIIDPIE 320 >gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum SL003B-26A1] Length = 411 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 49/266 (18%), Positives = 106/266 (39%), Gaps = 16/266 (6%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S S +F ++S + W + ++L+ ++++ LLG Sbjct: 143 NVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVESSLIYSIIDVLLGGGR 202 Query: 117 ETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 T ++ R +T+E L +R + I A Q + NLE + + +R Sbjct: 203 GTTAVRVEGRPYTTIETNLVRRMVEIILADAEQAFAPLSPVHFNLERL-ETNPRFAAISR 261 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP--- 230 +N + + + + +E+ + +++P TL ++ L+ + K DP Sbjct: 262 PANAAI-LVELRIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMGEKFGR------DPIWE 314 Query: 231 --FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 A + + + +D + L V++L +GQ + F + + Sbjct: 315 GHLASEIHAAEIEVDAVLYETHLPLGRVLSLDVGQTLIFDVDPHDPITIKCGNVPLTEGT 374 Query: 289 LGRVGKNYTIRITDRINFDQKSLKNF 314 LG+V + IR+T + + +L F Sbjct: 375 LGKVEDSIAIRVTRGLRRPKMTLAAF 400 >gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] Length = 395 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 22/216 (10%) Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S L +TL+ ++LG S I + + VE L KR + I L S + Sbjct: 138 SPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIVHALGDGFSNYISAE-- 195 Query: 160 LEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + I ++ N + + +E V MN+ I +A + I TLL+ + Sbjct: 196 ----FKIAKIETNPSMVQEVGLDETVVLAVMNVDISGLAMERIRICLPGTLLEHMFKIID 251 Query: 216 SQN------KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 ++ EN + +++ ++ + ++ + K ++D+ LK+G VI L+ Sbjct: 252 NRKHLARGFAYENNQDTIMEHLKASSFPMT----GQLGVVKLDIEDLYHLKVGDVID-LN 306 Query: 270 REKTCAI-LSANGKEIYSCELGRVGKNYTIRITDRI 304 + K A+ L + ++ ++G KN IRI DRI Sbjct: 307 KAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRI 342 >gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 56/287 (19%), Positives = 117/287 (40%), Gaps = 19/287 (6%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ + ++V + ++ +S ++ + ++ Sbjct: 52 RTLEIIFEHYGRLLSTNLPVYLRKTVQVEV----MNSEAVTYSEFTNALSNPVLLGLVNV 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S S + I ++NL +++ +LG + + R S +E + +R ++L + Sbjct: 108 SPLSGSIIIELADNLGYAIVDRMLGGLGTPLDK--PRDFSEIELLILERIYNVCVSLLPE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 S+ E SP LE + + E + + +++ I +V + +P TL Sbjct: 166 PWSSVCEISPRLERIETNSQFAQIIS--PTEMIALVTLHIKIGDVEGLMNICLPYLTLES 223 Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L T + Q + Q D I+ K + + + ++ D V L++G Sbjct: 224 VMDKLNTKFWYSNLQEHDDKQYTDAIEALISKA---KIPVKAVLGNSTISVDDFVNLQVG 280 Query: 263 QVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +I + I N K+ ++ G VG NY +R+T + +Q Sbjct: 281 DIIRLDSGVNQDLNIFVGNIKK-FTALPGAVGDNYAVRVTSVVREEQ 326 >gi|269114813|ref|YP_003302576.1| 1-acyl-SN-glycerol-3-phosphate acyltransferase [Mycoplasma hominis] gi|268322438|emb|CAX37173.1| 1-acyl-SN-glycerol-3-phosphate acyltransferase [Mycoplasma hominis ATCC 23114] Length = 269 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 18/145 (12%) Query: 160 LEDFYDI----DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + D+Y + D+L++ +N + N F ++N+ ENV + LIIP + LI S Sbjct: 31 MPDYYKVVEKNDFLQQKSNAILNHFNISVNVE-GFENVPNGPCLIIPNHSTYLDPLIMWS 89 Query: 216 S--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD-------VVTLK-IGQVI 265 + ++ ++ L++ ARK + +L +T D + TLK GQ Sbjct: 90 ALWNHRDGSKQSKLVNFVARKEITKKKMVKRIADLGQTYYIDTQNPREALATLKDFGQ-- 147 Query: 266 PFLHREKTCAILSANGKEIYSCELG 290 F+ R K+C ++ A G +LG Sbjct: 148 -FIKRNKSCGVIFAEGTRTKDGKLG 171 >gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] Length = 366 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGIIEINPSIAFPMLDRLLGGKGE 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P +R S +E L +L +ST +E+ P +E + I+ + + N + Sbjct: 140 --PFDASREFSDIELSL-------FETILRVMMSTLKEAWGPVMEIYPTIESKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + + +I E +L + +++ +S KS N Sbjct: 191 QIVAQNEIVVMVVMEIIIGHSSGMMNICYPVISLEPVLPKLASRDLMLNETSSKKSRNTE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ A+ VN++ + ++ D++ LK+G VI ++ +GKE Sbjct: 251 LKVLLGGAK------VNVEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKER 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + E+G +I IT+ I ++ ++K L Sbjct: 305 FRGEIGLRRFRKSISITEIIETEKDTVKRALE 336 >gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565] gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565] Length = 356 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E + + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELRPGDIIPVDMPENLLVFVED--LPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36] gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36] Length = 350 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 17/253 (6%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + + LV L+EN G Sbjct: 77 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 136 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L E+ + D + +YL N ++ Sbjct: 137 HAKIEGREFTPTERRI-------IQMLLKIVFEDYHEAWAPVMD-AEFEYLDSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V + ++ ++ F + +P L L+ Q+ E+ E Sbjct: 189 NIVSPTEVVVVSSFHIELDGGGGDFHITMPYSMLEPIRELLDAGVQSDKEDTDERWSSAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + V + T++ + T+ ++ L++G +IP E+ + Y +LGR Sbjct: 249 QEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIEMPEELTVFIEDLPS--YKAKLGR 306 Query: 292 VGKNYTIRITDRI 304 N ++I+ ++ Sbjct: 307 NKDNVAVKISRKL 319 >gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium HP15] Length = 332 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 98/257 (38%), Gaps = 18/257 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + D+S Q KF IH+ + + LV L++N G Sbjct: 71 MRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFG 130 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + VL+Q +E+ + D +YL Sbjct: 131 GEGRH-AKIEGREFTPTETRI-------VQMVLDQVFHDMKEAWHAVLKV-DFEYLSSEV 181 Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSED 226 N ++N E V ++ ++ +P + ++ Q+ ++ E Sbjct: 182 NPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDER 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 ++ +++V I+T + ++ +L+D+ +K G +IP E ++ANG IY Sbjct: 242 WVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPEHLT--VTANGIPIYK 299 Query: 287 CELGRVGKNYTIRITDR 303 LG +RI +R Sbjct: 300 ATLGTRDGKLALRIHER 316 >gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato Max13] gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato K40] gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDTLVLRANGVPSFKVKLG 305 >gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. maculicola str. ES4326] Length = 252 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 8 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 67 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 68 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 118 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 119 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 178 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 179 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 235 >gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae FF5] gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aceris str. M302273PT] Length = 322 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 305 >gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM 1740] gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes] Length = 354 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 30/273 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 79 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P R S +E L + +L Q + +E+ +P E F +D + + N + Sbjct: 139 --PYEATREFSDIELNL-------LDTILRQMMQNLKEAWAPVAEIFPSVDAKESSPNVV 189 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + L +I E++L + ++S +S KS N+ Sbjct: 190 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDLMLSETSSKKSRNRE 249 Query: 225 -EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 + L+ A VNI + LK+V+ L +G ++ I++ +G+E Sbjct: 250 LQALLGGAA-------VNISAVLGGTSLDLKEVLELGVGDIVRLDRPADDTVIVNVDGRE 302 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 Y +G T++I + I ++ +K L Sbjct: 303 KYIATIGLQRYRKTVKIKEVIKTEKDQVKEILE 335 >gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] Length = 326 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 21/207 (10%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV +++NL G +P+ R + E+++ +R +LN + +S Sbjct: 121 LVFLVVDNLFGGDGRFLPKTEGRDFTQTEQRIIQR-------LLNLVFDSYGKS---WHP 170 Query: 163 FYDID--YLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLIS 213 Y I+ YL+ TN NE V + +V + +P L L+S Sbjct: 171 VYPIEFEYLRAETNTQFANVATPNEVVVATTFEVNFGSVVGEMHICMPYSILEPIRDLLS 230 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + Q ++ + + +++ V + + + L ++ +K+G VIP E Sbjct: 231 STLQGEALEVDKRWVGRLSKQVQSAEVTLLANLTHAQVRLDQILNMKVGDVIPLDIPEFV 290 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRI 300 A S +G + C+ G Y +R+ Sbjct: 291 TA--SVDGVPVMECKYGISNGRYALRM 315 >gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] Length = 325 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 41/216 (18%), Positives = 86/216 (39%), Gaps = 18/216 (8%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VD++ S KF + S + + N + LV +L+EN G + Sbjct: 77 VDVNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALLVVDTRLVFSLVENFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175 P++ R + +E+ + + + I A L E S I+ L+ N Sbjct: 137 Q-PKIEGRDFTPIEQSIIVKVVKIILANLEDAWRPVHEVS--------IELLRSEINPQF 187 Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 ++ V I+ + +EN S VL +P T+ +++ L + + Q + I Sbjct: 188 ATIVPPSDVVVVISFEVELENALGSMVLALPYATIEPIRSKLYA-AFQTERLEIDHAWIS 246 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 F + + V+++ + T + ++ +K+G ++ Sbjct: 247 RFRDRLMETPVDMNVTFGTTQITGRQLLDMKVGDIL 282 >gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1] gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/253 (15%), Positives = 94/253 (37%), Gaps = 18/253 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E + ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++V I + ++ L+D++ ++ G VIP E I+ ANG + ++G Sbjct: 249 RQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMPEDM--IMRANGVPAFKVKMGS 306 Query: 292 VGKNYTIRITDRI 304 N +++ + I Sbjct: 307 HKGNLALQVIEPI 319 >gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 356 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E + + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFVED--LPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 356 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E + + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFV--EDLPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] Length = 336 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 9/208 (4%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NL+ +++NL G ++ R + VE+++ +R + V Q P Sbjct: 122 NLIFLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQR---MLHLVFEHYAKAWQPVYPIDF 178 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +F ++ + N + NE V T + ++ + + + +P T+++ L+S + Sbjct: 179 EFLRMEMHTEFANVATPNEVVITTSFSIELGSNGGDVHICMPY-TMIEPIRDRLTSAIQG 237 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + +++ V + + K + D++ +K+G VIP C Sbjct: 238 EALEVDKRWLRLLSQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPL--ELDDCVTAK 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + C G Y +R+ +N Sbjct: 296 VDGVPVMECNYGTFNGQYALRVNRMLNM 323 >gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] Length = 352 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 53/272 (19%), Positives = 112/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P R S +E L + +L Q + +E+ +P E F ++D + + N + Sbjct: 140 --PYESTREFSDIELNL-------LDTILRQMMQNLKEAWAPITEIFPNVDVKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + L +I E++L + ++S +S KS N+ Sbjct: 191 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A+ VN+ + K TL++++ L+ G ++ I++ +G+E Sbjct: 251 LQALLGGAK------VNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIINVDGREK 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + +G TI + + I ++ +K L Sbjct: 305 FLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336 >gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 305 >gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] Length = 329 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 27/268 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW----SSNFFIGCSNNLVITLLENLLG 113 D+S Q KF +H+ +V + +L + S+ FI LV L++N G Sbjct: 75 ADVSSGGLQIMKFGEYVHTL---YVPTSLNLVKFRPLRSTALFI-LDAKLVFKLVDNFFG 130 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + + Q+ + T+ +P L+ +++Y+ Sbjct: 131 GDGRH-AKIEGREFTPTEIRIVQLMLEQV------FVDLTEAWAPVLK--LELEYISSEV 181 Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSED 226 N ++N E V ++ ++ + +P + L+ Q+ + + + Sbjct: 182 NPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVRELLDAGVQSDVDEKDDR 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + ++VN+ I KK TL DV+ K G VIP E + AN + Sbjct: 242 WGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMPEYVT--VRANNVPTFR 299 Query: 287 CELGRVGKNYTIRITDRINFDQK-SLKN 313 +LG Y++++ + I K SLKN Sbjct: 300 GKLGSSNGKYSVQMKESIKAQMKESLKN 327 >gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 342 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/215 (19%), Positives = 95/215 (44%), Gaps = 15/215 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V + S + + I S + V + SSN + + LV +++ +LG + + Sbjct: 79 VSVEVASVEQLSYDEFIKSLVQPTVIVVMEMYPLSSNALLEINPRLVFAIIDRMLGGAGK 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T + R L+ +E+ + +R + ++ +L + +T + +++ Y + + Sbjct: 139 TTYK--ARELTDIERTVTERVVMRMLELLEESWATIVDLRFRIQNMESNPYFAQICP--A 194 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-------NKSENQSEDLIDP 230 ++ V I + + I +V + IP ++ + LSSQ ++ ++ S++ I Sbjct: 195 SDVVVVITLQVKIGDVDGFINICIPY-FAIEPVIDQLSSQRWFVSTGSREDDASQERI-- 251 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + ++ V + I LKD++ L++G VI Sbjct: 252 -IERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVI 285 >gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] Length = 342 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 45/254 (17%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 187 NIVSPTEVVVVNSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 233 RKTYQLNVNI--DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K ++V + + + + +L+DV+ ++ G VIP E ++ Y C+LG Sbjct: 246 LKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPE--YVLMKIEELPTYRCKLG 303 Query: 291 RVGKNYTIRITDRI 304 + + ++I ++I Sbjct: 304 KSREQLALKICEKI 317 >gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218] Length = 352 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 39/211 (18%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L +++ +P + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFGDYKDAWAPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHIVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G +IP E Sbjct: 231 AGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDLALRDLMELQVGDIIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A + Y ++GR G+ ++++++I Sbjct: 290 -ATMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14] Length = 349 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R L +L+D++ L++G VIP Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E+ A + Y ++GR G N ++I++++ Sbjct: 283 IDMPEQ--ATIFVEDLPTYHAKMGRSGDNVALKISEKL 318 >gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 349 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R L +L+D++ L++G VIP Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E+ A + Y ++GR G N ++I++++ Sbjct: 283 IDMPEQ--ATIFVEDLPTYHAKMGRSGDNVALKISEKL 318 >gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 349 Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R L +L+D++ L++G VIP Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E+ A + Y ++GR G N ++I++++ Sbjct: 283 IDMPEQ--ATIFIEDLPTYHAKMGRSGDNVALKISEKL 318 >gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] Length = 352 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++S Q KF IH+ + I LV L++N G Sbjct: 76 AEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGR 135 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ + + I + + + S +YL N + Sbjct: 136 YHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS--------FEYLDSEVNPAM 187 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E V + ++ ++ F + +P ++L+ L + +S+ + DL Sbjct: 188 ANIVSPTEVVVISSFHIELDGGGGDFHVSLPY-SMLEPIRELLDAGVQSDKEDTDLRWSK 246 Query: 232 ARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ ++ TL + ++ +K G +IP E ++ + +L Sbjct: 247 ALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPEHITVMIEE--LPTFRAKL 304 Query: 290 GRVGKNYTIRITDRI 304 GR N ++ITD+I Sbjct: 305 GRSRDNLALKITDKI 319 >gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] Length = 352 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++S Q KF IH+ + I LV L++N G Sbjct: 76 AEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGR 135 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ + + I + + + S +YL N + Sbjct: 136 YHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS--------FEYLDSEVNPAM 187 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E V + ++ ++ F + +P ++L+ L + +S+ + DL Sbjct: 188 ANIVSPTEVVVISSFHIELDGGGGDFHVSLPY-SMLEPIRELLDAGVQSDKEDTDLRWSK 246 Query: 232 ARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ ++ TL + ++ +K G +IP E ++ + +L Sbjct: 247 ALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPEHITVMIEE--LPTFRAKL 304 Query: 290 GRVGKNYTIRITDRI 304 GR N ++ITD+I Sbjct: 305 GRSRDNLALKITDKI 319 >gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132] gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans ND132] Length = 325 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VDI+ S KF + S S + N + + LV L+EN G + Sbjct: 77 VDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175 P++ R + +E+ + +R V+ ++ +ES + + + ++ ++ N Sbjct: 137 Q-PKVEGRDFTPIEQAIVER-------VVKIALANMEESWKPVHEVH-VEMVRTEVNPQF 187 Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---- 227 ++ V + + +EN S ++ +P T+ + S+ + QSE L Sbjct: 188 AAIVPPSDVVIVVTFEVELENAIGSLIVCLPY-----ATMEPIRSKLHASFQSERLEVDH 242 Query: 228 --IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 I+ F + + V + R+ + + ++ L+ G +I E G + Sbjct: 243 VWINRFKERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKF 302 Query: 286 SCELGRVGKNYTIRI 300 GRV N + ++ Sbjct: 303 QGLPGRVKGNKSFKV 317 >gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 44/250 (17%), Positives = 104/250 (41%), Gaps = 9/250 (3%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V + + + + IHS + + + + + N + + +++ LLG + Sbjct: 77 NVKVKIETVEQITYEEFIHSVQNPTIITVFKMPPLAGNIIFETNPQFSLQVIDILLGGNG 136 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ + S ++K + ++ + + L + E P +E + N Sbjct: 137 DR--KVEAKEFSDIDKNIMRQITTGMISNLKLAWESILEVEPEVEGIETNPAI--NQTLA 192 Query: 177 SNEFVTTINMNMTIENVASSFV-LIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N+ V I ++ + N S+F+ + IP E +L ++ S +N E+ + + Sbjct: 193 PNDPVALITFSVEM-NKRSTFINMCIPYLSIEKILDKLVVQYSFKNDDESLKAESREKIE 251 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++++V++ + T++D + L +G VI R + + +E Y + G Sbjct: 252 EGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVIKLDTRSSSPIKVYVGNEECYCAKPGVS 311 Query: 293 GKNYTIRITD 302 GKN + I D Sbjct: 312 GKNMGVMILD 321 >gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] Length = 322 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 42/255 (16%), Positives = 95/255 (37%), Gaps = 20/255 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQGMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E + ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELG 290 ++V + + ++ L+D++ ++ G VIP L +E I+ ANG + +LG Sbjct: 249 REDLLDVDVPLSATVARRQLRLRDILHMQPGDVIPVELPQE---MIMRANGVPSFKVKLG 305 Query: 291 RVGKNYTIRITDRIN 305 N +++ + IN Sbjct: 306 SHKGNLALQVIEPIN 320 >gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] Length = 342 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +HS + + LV L++N G Sbjct: 97 DVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGRH 156 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+Q + +E+ + D + +Y+ N L+ Sbjct: 157 A-KIEGREFTPTELRVVR-------MVLDQAFADLKEAWHAVLDV-NFEYVNSEVNPALA 207 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ +V + +I P +L Q+ +Q E Sbjct: 208 NIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGF-----QSDVSDQDER 262 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + +NV + + ++ L+D++ ++ G VIP E I+ ANG + Sbjct: 263 WVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDM--IMRANGMPAFK 320 Query: 287 CELGRVGKNYTIRITDRI 304 +LG N +++ + + Sbjct: 321 VKLGAHKGNLALQVLEPV 338 >gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166] Length = 323 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +HS + + LV L++N G Sbjct: 78 DVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+Q + +E+ + D + +Y+ N L+ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQAFADLKEAWHAVLDV-NFEYVNSEVNPALA 188 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ +V + +I P +L Q+ +Q E Sbjct: 189 NIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGF-----QSDVSDQDER 243 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + +NV + + ++ L+D++ ++ G VIP E I+ ANG + Sbjct: 244 WVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDM--IMRANGMPAFK 301 Query: 287 CELGRVGKNYTIRITDRI 304 +LG N +++ + + Sbjct: 302 VKLGAHKGNLALQVLEPV 319 >gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] Length = 341 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 51/255 (20%), Positives = 107/255 (41%), Gaps = 16/255 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S + S +F ++S + S W + + + L+ ++++ LLG Sbjct: 92 VEVSLDNITSIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVDSALIYSIVDVLLGGRRG 151 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 T ++ R +T+E+ L +R ++ VL+ + SP + D L+ N Sbjct: 152 TAAMRIEGRPYTTIERNLVER---MVTVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 205 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N V + + +E+ L++P TL ++ L+ + K S Sbjct: 206 TIARPANAAVLA-RLRIDMEDRGGRLELMLPYATLEPVRELLLQMFMGEKFGRDSI-WET 263 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + +V +D ++ L DV+ LK G I + + ++S ++ Sbjct: 264 HLANELWNTDVELDAVLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDMRCGNVSLFSGKM 323 Query: 290 GRVGKNYTIRITDRI 304 GR + +RI++R+ Sbjct: 324 GRKNGSIAVRISNRL 338 >gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] Length = 320 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 VN+ ++ K+ L+D++ LK G VIP ++SANG + +LG+ N ++ Sbjct: 255 VNMGCKVAEKEVPLRDIIDLKEGDVIPM--EMPGDLVISANGIPMMLAKLGQSKGNLALQ 312 Query: 300 ITDRIN 305 + ++IN Sbjct: 313 VVEKIN 318 >gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 364 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 47/265 (17%), Positives = 99/265 (37%), Gaps = 18/265 (6%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF IH+ + I LV L++N G Sbjct: 79 EVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + + S +YL N ++ Sbjct: 139 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 190 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V + ++ ++ F + +P L L+ Q+ +E+ Sbjct: 191 NIVSPTEVVVISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKAL 250 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + V + TR+ K +L+ ++ L+ G VIP E + + ++GR Sbjct: 251 RDEIMDVEVGLSTRMLEVKLSLEQIMNLQAGDVIPVEMPEHITVFI--EDLPTFRAKMGR 308 Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316 N ++I+++I S+K+ +H Sbjct: 309 SRDNVALQISEKIK-RPDSVKSEMH 332 >gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 17/206 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G ++ R + E+++ +R +A V + + P Sbjct: 120 NLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILA---IVFENYAKSWEPVYP--- 173 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +Y++ N NE V + + V+ IP T+ I S Sbjct: 174 --VEFEYIRSEMNTQFANIATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTS 231 Query: 216 S-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S Q ++ + I ++ V I + ++ ++ +K+G +IP + Sbjct: 232 SLQGETLEVDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVL 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 A +G + C G+ Y +R+ Sbjct: 292 A--KVDGVPVMECTYGKFNGQYALRV 315 >gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] Length = 412 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 112/271 (41%), Gaps = 28/271 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S S +F ++S + W I ++L+ ++++ LLG Sbjct: 145 VEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLITVESSLIYSIIDVLLGGGRG 204 Query: 118 T-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T ++ R +T+E L ++ +A I L SP ++++ L+ N Sbjct: 205 TSAVRVEGRPYTTIETGLVQQMVALI---LQDAEHAFAPLSPV---HFNLERLETNPRFA 258 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ S +++P TL ++ L+ + K D Sbjct: 259 AISRPANAAI-LVELRIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMGEKFGR------D 311 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK-E 283 P A + + V +D + L V++L +GQ + F +E T ++ G Sbjct: 312 PIWEGHLATEIHAAEVEVDAVLYETYLPLGRVLSLDVGQTLVF-DKEPTDPVMIKCGNIP 370 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+V + IR+ + + +L F Sbjct: 371 LTEGTLGKVDDSIAIRVAKNLRKPKMTLAAF 401 >gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92] gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92] Length = 366 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 28/273 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ N + + ++ +++ LLG + E Sbjct: 81 VEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGE 140 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY-DIDYLKKNTNRL 176 NR L+ +E L + AVL + +ES + D Y +++ + + N + Sbjct: 141 NFET--NRELTDIEVNL-------LDAVLRMIMQRLKESWAMITDMYPNVEAKESSPNVV 191 Query: 177 S----NEFVTTINMNMTIENVASSFVLIIPQ---ETLL-----KTTLISLSSQNKSENQS 224 NE V + M + + N + L P E +L + ++ +S KS N+ Sbjct: 192 QIVSQNEIVIMVVMEIIVGNSSGMINLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKE 251 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A Y+ + ++ + + LK G ++ AI+ + KE+ Sbjct: 252 LKTLIGRAEVLYE------AILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCIDKKEV 305 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + E+G +I+I I D+ +KN L K Sbjct: 306 FLAEVGLHRFRKSIKIEQLIRSDKDEIKNILEK 338 >gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] Length = 334 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/246 (18%), Positives = 97/246 (39%), Gaps = 11/246 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R ST E+++ R + V+ + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSTTEQRVINRMVN----VICEEYKKAWHGIYPLELAYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ S + +P TL ++ L S S+Q + + R+ Sbjct: 194 PSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYS-STQGDAIEVDRRWVKVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ ++ G I L RE S G ++ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMRPGDFIE-LDREPLIR-ASIGGVPVFECQYGTHND 310 Query: 295 NYTIRI 300 Y IR+ Sbjct: 311 KYAIRV 316 >gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] Length = 334 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/262 (17%), Positives = 101/262 (38%), Gaps = 11/262 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R ST E+++ R + V+ + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSTTEQRVINRMVN----VICEEYKKAWHGIYPLELAYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ S + +P TL ++ L S S+Q + + R+ Sbjct: 194 PSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYS-STQGDAIEVDRRWVKVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ ++ G I L RE S G ++ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMRPGDFIE-LDREPLIR-ASIGGVPVFECQYGTHND 310 Query: 295 NYTIRITDRINFDQKSLKNFLH 316 Y IR+ + + S H Sbjct: 311 KYAIRVERSLRGGETSWMGEKH 332 >gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1] gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1] Length = 354 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 20/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 + ++ R + E ++ + VL Q +E+ + +YL N L+ Sbjct: 138 V-KIEGREFTPTENRV-------VQLVLKQAFKDMEEAWKAVLPV-KFEYLSSEVNPALA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP 230 N E V ++ ++ L +P + L+ L S Q+ NQ E + Sbjct: 189 NIVSPSEVVVVNTFHIELDGGGGDLQLTVPYSMIEPLREVLDS-GVQSDVGNQDERWMSS 247 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + NV++ ++ +K L ++ LK G V+ E ++ AN Y +LG Sbjct: 248 LREEIMGANVHLRCKLLDRKIKLSELAALKTGDVLQVEMPEHV--MIYANEVPTYRGKLG 305 Query: 291 RVGKNYTIRITDRI 304 + Y ++I +++ Sbjct: 306 TSREKYAVKIAEKV 319 >gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] Length = 326 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 29/259 (11%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + KFS +H+ + + LV L++N G Sbjct: 80 EISVGGIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVVDPKLVFILVDNFFGGDGRY 139 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + T L+Q + +++ + D D +Y+ N + + Sbjct: 140 HAKIEGREFTPTELRVIRMT-------LDQAFTDLKKAWAPVMDL-DFEYINSEVNPQFA 191 Query: 178 N-----EFVTTINMNMTIE------NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N E V + ++ ++ +V + +I P LL + Q+ + E Sbjct: 192 NIVSPTEVVCVSSFHIELDGGGGDLHVTMPYSMIEPMRELLDAGI-----QSDRSDVDER 246 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 I + V + + + +L+DV+ LK G +IP E+ +L A G + Sbjct: 247 WIRALRDEVKAAEVELSSMLTETTLSLEDVMRLKPGDIIPIDLPEQV--LLRAEGIPVLR 304 Query: 287 CELGRVGKNY-TIRITDRI 304 + G V Y I++T+RI Sbjct: 305 GKFG-VSDGYNAIKVTERI 322 >gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H] gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H] Length = 343 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 22/262 (8%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA--- 114 V+ S S +F + + +F+ W + + S++L+ ++++ LLG Sbjct: 78 VEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSLIYSIVDALLGGHVR 137 Query: 115 --SHETIP--QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170 S T P + R + +E+ L + + I L S P + + L+ Sbjct: 138 GDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFS------PLCAVNFHFERLE 191 Query: 171 KNTN-----RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 N+ R N VT + +E +++P TL I L Q E Sbjct: 192 MNSRFAMICRAGNGVVTA-RFGIDMEGRGGDVDIVLPHATLEPVRDILLQ-QFMGEKFGH 249 Query: 226 DLI--DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 D I + AR+ +Q ++ +D + + LKD++ L G + + L Sbjct: 250 DGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVSLRCGEHV 309 Query: 284 IYSCELGRVGKNYTIRITDRIN 305 +++ +GR ++I D +N Sbjct: 310 LFTGRVGRKQGQVAVKIEDVLN 331 >gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VDI+ S KF + S S + N + + LV L+EN G + Sbjct: 77 VDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175 P++ R + +E+ + +R V+ ++ +ES + + + ++ ++ N Sbjct: 137 Q-PKVEGRDFTPIEQAIVER-------VVKIALANMEESWKPVHEVH-VELVRTEVNPQF 187 Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---- 227 ++ V + + +EN S ++ +P T+ + S+ + QSE L Sbjct: 188 AAIVPPSDVVIVVTFEVELENAIGSLIVCLPY-----ATMEPIRSKLHASFQSERLEVDH 242 Query: 228 --IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 I+ F + + V + R+ + + ++ L+ G +I E G + Sbjct: 243 VWINRFKERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKF 302 Query: 286 SCELGRVGKNYTIRI 300 GRV N + ++ Sbjct: 303 QGLPGRVKGNKSFQV 317 >gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 337 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 27/286 (9%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N +N E+V ++ +E + Sbjct: 165 LKEAWAPVMD--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ TL+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMTLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301 LK+G V+P E + L +++ E G N ++IT Sbjct: 275 TGLKVGDVLPI---ELPAQVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 403 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 48/252 (19%), Positives = 101/252 (40%), Gaps = 16/252 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+++ + S +F +++ + W ++ + +NL L+ LLG Sbjct: 137 VEVTLDNITSVRFGDYLNAIPLPTLLGVFKADLWENSGLVTVDSNLAYATLDLLLGGKRG 196 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T +L R +++E L +R + +L ++ Q SP + ID L+ N Sbjct: 197 TTTIRLDGRPFTSIEMSLVRR---MLEIILGDLEASFQPLSPVR---FQIDRLESNPRFA 250 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--D 229 R +N + I++ + +E ++ P T+ + L S E D + Sbjct: 251 TITRPANAAI-LIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQS-FMGEKLGRDHVWEG 308 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + +Q V ++ ++ LK V+ L++G I F + L + + Sbjct: 309 HLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTILFDAKPTDLITLRCGDWALSQGRI 368 Query: 290 GRVGKNYTIRIT 301 GR+ + +++T Sbjct: 369 GRLEDSIAVQVT 380 >gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] Length = 335 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NL+ +++NL G ++ R + VE+++ +R + V Q P Sbjct: 121 NLIFLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQR---MLQLVFEHYARAWQPVYPIDF 177 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +F ++ + N + NE V T ++ + N + +P T+++ L+S + Sbjct: 178 EFLRMEMHTEFANVATPNEVVVTTTFSLELGNNGGDVHICMPY-TMIEPIRDRLTSAIQG 236 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + +++ V + + + D++ +K+G VIP + A Sbjct: 237 EALEVDKRWLRLLSQQVQTAEVELIADLATANVQVSDILNMKVGDVIPLELDDVVTA--K 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + C G Y +R+ +N Sbjct: 295 VDGVPVMECNYGTFNGQYALRVNRMLNM 322 >gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] Length = 372 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 83 VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGE 142 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P +R S +E L +L +ST +++ P +E F +I+ + + N + Sbjct: 143 --PFDASREFSDIELSL-------FETILRVMMSTLKDAWGPVMEIFPNIESKESSPNVV 193 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + +I E +L + +++ +S KS N Sbjct: 194 QIVAQNEIVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLASRDLMLNETSTKKSRNTE 253 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ A+ V I+ + + TL+DV+ L+ G ++ + +GK+ Sbjct: 254 LHVLLGGAK------VGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDR 307 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + ++G ++++T+ I+ ++ ++K L Sbjct: 308 FRGKIGLRRFRKSVQVTEIIDTERDAVKRALE 339 >gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] Length = 329 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 17/207 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++N+ G ++ R + E+ R I ++ AV+ + + E+ LE Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGREFTQTEQ----RIIQKMLAVVFETYAKAWETVYPLE 176 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214 ++++ N NE V ++ + +F + +P TL L+ Sbjct: 177 ----FEFVRSEMNPQFANIATPNEVVIVTTFDIELGGNGGAFHICMPYSTLEPVKDLLFN 232 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + Q + + + +R+ + + + TL+ V+ +++G VIP E Sbjct: 233 NIQGEHLAVDKRWLQLLSRQVQCAEIELAATLGQANITLERVLKMRVGDVIPLNVDENIT 292 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 A S +G I C+ G Y ++I Sbjct: 293 A--SIDGVPIMECKYGVFNNQYALKIV 317 >gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYP----LELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ + + +P TL ++ L S S+Q S + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I + A S G I+ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] Length = 334 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYP----LELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ + + +P TL ++ L S S+Q S + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I + A S G I+ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 337 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 52/286 (18%), Positives = 103/286 (36%), Gaps = 27/286 (9%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVMD--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ TL+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMTLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301 LK+G V+P E + L +++ E G N ++IT Sbjct: 275 TGLKVGDVLPI---ELPAQVPLCVEDIPLFTGEFGISNGNNAVKIT 317 >gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB] gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB] Length = 338 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 24/212 (11%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++N+ G ++ R + E+++ I +LN + E S + + Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRI-------IQGLLNVVFT---EYSKSWK 170 Query: 162 DFYDI--DYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 YDI +Y++ N + +N E V + + + + P ++L+ Sbjct: 171 PVYDINFEYIRSEMNSQFANIATPSEIVVSTTFTLEFGGATADMHICFPY-SMLEPIRDL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S +S+ S D I ++ V I + K TL ++ LK+G VIP + Sbjct: 230 LYSTMQSDQLSSDKRWIGTLRKQLQGAEVEIVALLGSGKITLGQILKLKVGDVIPLHIPD 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 K A++ + + C G+ Y +++ DR Sbjct: 290 KIEALVDS--VPLMECTYGQQSGQYALKV-DR 318 >gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] Length = 332 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 48/271 (17%), Positives = 108/271 (39%), Gaps = 17/271 (6%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 Y + L ++ V ++ S + I S + + + F I + Sbjct: 62 YARLLTTQLSAQLRTYVQVAVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEVNP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ +L+ +LG E + ++ SL+ +E K+ +S + + + T +E+ ++ Sbjct: 122 NIAYAMLDRMLGGQGEALNKV--ESLTEIETKI-------LSQLFQRSLETLREAWESVV 172 Query: 162 DFYDI-DYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLIS 213 D + D ++ N L NE V I+++ TI + + +P E++L I Sbjct: 173 DLDPVMDEIEVNPQFLQLVSPNETVVVISLSTTIGEASGMMNICLPHVVIESILPKLSIH 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L Q K +++ + + Q +++ + + ++ + + L VI Sbjct: 233 LWMQQKKKDRQPGELSALEKNLKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ + Y + G+V ++ITD I Sbjct: 293 PLLVKLGNEPKYYSQPGKVKGKLAVQITDSI 323 >gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 110/271 (40%), Gaps = 26/271 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 79 VEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGD 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 P +R S +E L + QI L + S+ E P+ +D + + N + Sbjct: 139 --PYENSREFSDIELNLLDTLLRQIMQNLKEAWSSITEIFPS------VDAKESSPNVVQ 190 Query: 178 ----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQSE 225 NE V + M + I + + + +I ET+L + ++S +S KS N+ Sbjct: 191 IVAQNEIVIMVVMEIIIGHSSGMMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKEL 250 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + A NV + + +LK+V+ L++G ++ ++S +G+E Y Sbjct: 251 QALIAGA------NVVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVSVDGREKY 304 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +G T++I + I ++ +K L Sbjct: 305 IASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335 >gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] Length = 334 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIY----PLELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ + + +P TL ++ L S S+Q S + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I + A S G I+ C+ G Sbjct: 253 IQAAEVTLVAELAQADATVEQLLAMKPGDFIELDREPRIRA--SIGGVPIFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] Length = 327 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 57/292 (19%), Positives = 115/292 (39%), Gaps = 37/292 (12%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ + +DV + + +S ++ + ++ Sbjct: 52 RTLEIIFEHFGRLLATNLPGYLRKTVSVDV----VNSEVVIYSEFSNALSNPVLLGVVTM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + ++NL +++ LLG S T+ + R S +E + +R +L + Sbjct: 108 PPLKGNIIMEMASNLGYAIIDRLLGGSGNTMDK--ARDFSEIELTILERIFTICVNLLQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---------------NV 193 ++SP LE + TN ++F I+ + TI N+ Sbjct: 166 PWQNVVQTSPRLE--------RIETN---SQFAQIISPSETIAIVTLSIKIGEVEGLMNI 214 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 FV + P L T + Q+K + +D I+ + + + + + ++ Sbjct: 215 CLPFVTLEPVMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRA---QIPMKAVLGHSRISV 271 Query: 254 KDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 D V L++G +I + + + N K+ ++ G Y IRIT+ I Sbjct: 272 GDFVNLQLGDIIRLDRKVDDELEVYVGNIKK-FAALPGYSEDKYAIRITEVI 322 >gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] Length = 328 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 56/281 (19%), Positives = 119/281 (42%), Gaps = 23/281 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +D+++ I + + S +I SF V + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLRTFVDVEISIDQLTYEEFIRSVMIPSF---IVIFTGDV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S+ F + +L T+L+ ++G + P NR+ + +E + +R + I +L Q Sbjct: 110 FEGSAIFEMRL--DLFYTILDIIMGGPGDNPP---NRTPTDIETSIMRREVTNILTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSFVLIIPQE 204 S Q P++E+ ++ N + NE V + +++ +SF+ + Sbjct: 165 AWSDFQYFIPSIEN------IETNPQFVQIVPPNEIVLLVTASVSWGEF-TSFINVCWPF 217 Query: 205 TLLKTTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +LL+ L LS++ + + E+ ++ + + + + I TL++V+ L+ Sbjct: 218 SLLEPFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPLTVQAVIGEAWLTLREVLNLQ 277 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 G VI K + GK + G+ Y ++IT Sbjct: 278 EGDVIRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKIT 318 >gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] Length = 335 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 30/223 (13%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV ++++L G ++ R +T E+++ +R +LN + + +S + Sbjct: 122 NLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRR-------LLNLTLESYGKS---WD 171 Query: 162 DFYDID--YLKKNTNRL------SNEFVTTINMNMTIE------NVASSFVLIIPQETLL 207 Y I+ Y++ + +NE V + ++ N+ + +I P LL Sbjct: 172 PVYPIEFEYVRSEMHTKFASITGNNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLL 231 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 L + + + ++ L +R+ ++++ +++++++ LK+G V+P Sbjct: 232 TRPLQETTLEEVDQRWAQQL----SRQVRSADIDVVAEFARIPSSIRELMRLKVGDVLPV 287 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 E A S +G + C G Y +R+ + D +S Sbjct: 288 TVPETIVA--SVDGVPLMECGYGVFNGQYALRVQNMFTHDTES 328 >gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis TAC125] gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 363 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/266 (18%), Positives = 104/266 (39%), Gaps = 20/266 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 78 EVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + + S +YL N ++ Sbjct: 138 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 189 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++L+ L + +S+ + DL A Sbjct: 190 NIVSPTEVVVISSFHIELDGGGGDFHIALPY-SMLEPIRELLDAGVQSDTEDTDLRWSKA 248 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ L + TLK ++ LK G +IP E + + ++G Sbjct: 249 LRDEIMDVEVELSTQLLEVDLTLKQIMELKAGDIIPVEMPEHITVFVEE--LPTFRAKMG 306 Query: 291 RVGKNYTIRITDRINFDQKSLKNFLH 316 R + ++I+++I S+K+ LH Sbjct: 307 RSRDSVALQISEKIK-RPDSVKSELH 331 >gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134] gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134] Length = 337 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 16/210 (7%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G ++ R + E+++ +R + T P Sbjct: 125 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLEMTLTSYGNAWRTVY---PIET 181 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQN 218 ++ + K N + NE V T ++ + V + +P + LK L++ Sbjct: 182 EYVRSEMHTKFANVATVNEAVITTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDE 241 Query: 219 KSENQSEDLIDPFARKTYQL---NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 K ++S A+ + QL +V + ++T+ +V+ L+ G V+P E Sbjct: 242 KEVDKSW-----LAKLSTQLRAADVEVVAEFTHVQSTVAEVLALRAGDVLPIELPEHVFG 296 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRIN 305 NG + C G + Y +R+ IN Sbjct: 297 --KVNGVPVMQCGFGTINGQYALRVERMIN 324 >gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 51/285 (17%), Positives = 102/285 (35%), Gaps = 25/285 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + E D +Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVME--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QLN V + + + K+ +L+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLNTAEVTLSSVLASKRMSLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 LK+G ++P + L +++ E G N ++IT Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPMFTGEFGVSNGNNAVKIT 317 >gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp. Marseille] gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp. Marseille] Length = 332 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 17/206 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV L++NL G ++ R + E+++ +R I ++ + + + E +E Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQR----ILGIIFETYAKSWEPVYPVE 175 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214 +Y++ N NE V + + V+ P + L++ Sbjct: 176 ----FEYIRSEMNTQFANIATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTS 231 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S Q ++ + I ++ V I + K TL D++ ++ G +IP + Sbjct: 232 SMQGETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTIT 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 A + + C G++ Y +R+ Sbjct: 292 A--EVDSVPVMECSYGKLNGQYALRV 315 >gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 348 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ +D+ A + ++V ++ R L +L+D++ L+ G +IP Sbjct: 223 PIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++G+ G N ++IT ++ Sbjct: 283 IDVPE--SATVFVEDLPTYRAKMGKSGDNIALKITQKL 318 >gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] Length = 340 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 46/258 (17%), Positives = 97/258 (37%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF IH+ + + LV L++N G Sbjct: 76 DVASGGVQILKFGEYIHTLYVPTSLNLVKIRPLRGTGLFILDAKLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q+ + + + + D +Y+ N ++ Sbjct: 136 -AKIEGREFTPTEIRIVQMVLEQVFHDMKEAWNAVMK--------VDFEYVNSEVNPAMA 186 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ +VA + +I P +L + Q+ ++ E Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGDMHVAMPYSMIEPIREVLDAGV-----QSDVDDVDER 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 I + + V ++ + +K +L+ + LK G VIP E ++ANG I+ Sbjct: 242 WISALQQDILEARVPLNAAVVRQKISLRSLSRLKPGDVIPVELPETIT--VTANGVPIFI 299 Query: 287 CELGRVGKNYTIRITDRI 304 ++G+ N ++I D+I Sbjct: 300 AKVGQCNGNLALKIVDKI 317 >gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY] gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY] Length = 334 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + Q P LE Y ++ ++ Sbjct: 138 QTRIEGRDFSATEQRVINRLVDVICAEYKK---AWQGIYP-LELAYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I ++A + + +P TL ++ L S S Q + + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLAGAIHICMPYATLEPIRDVLYS-SVQGDAIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I L RE S G ++ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIE-LEREPRIR-ASIEGVPVFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146] gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella ictaluri 93-146] Length = 337 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 40/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV ++NL G ++ R + E+++ I ++L + +++ + Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRV-------IQSMLRLALDAYRDAWSAIF 175 Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 DI+Y++ N N+ V T + + ++ F + IP + L+ L+ Sbjct: 176 KL-DIEYVRSEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLV 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + +N S+ + + D +++ + + L DV+ L+IG V+P ++ Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVADFVDIPLRLSDVLKLQIGDVLPIDRPDR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 A + +G + +C+ G Y +R+ IN Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324 >gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum centenum] gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 352 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 9/264 (3%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+++ S +F + + + W ++ + + L+ ++++ LLG Sbjct: 94 VEVTVQQIASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRS 153 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 + R + +E+ LA+R I + L S E T S Sbjct: 154 DPAPIDGRPYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERVETTPQFAVITR--S 211 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK--SENQSEDLIDPFAR 233 N + + ++ L+IP TL ++ L+ + K ++ E + R Sbjct: 212 NNACISARFQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGRDSMWETHLKNELR 271 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 +T +V++ + + +L D++ K G + R A+L+ ++ E+G+ Sbjct: 272 RT---SVDLSAVLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRN 328 Query: 294 KNYTIRITDRINFDQKSLKNFLHK 317 N IRI + + + L + Sbjct: 329 GNVAIRIDADLGAQDEVIHGLLQR 352 >gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60] Length = 337 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV ++NL G ++ R + E+++ +R +L + +++ + Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQR-------MLRLALDAYRDAWGAIF 175 Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 D++Y++ N N+ V T + + ++ F + IP + L+ L+ Sbjct: 176 KL-DVEYVRSEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLV 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + +N S+ + + D +++ + + L DV+ L+IG V+P ++ Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVANFVDVPLRLSDVLKLQIGDVLPIDRPDR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 A + +G + +C+ G Y +R+ IN Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324 >gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] Length = 359 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 25/257 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VD+ Y S FS S S ++S + + +L +++ LLG Sbjct: 81 VDVKYASIDQITFSEFQKSLNSPTFIVIFSSEAFSGSAILQMGLDLGYVIIDRLLGGPGN 140 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL- 176 T+ ++ R + +E + ++ A + +L++ S +E NLE+ L+ N + Sbjct: 141 TLEEI--RPPTEIEMNILRKESAVMLRMLSKSWSNIEEFDANLEN------LETNPQFVQ 192 Query: 177 ---SNEFVTTINMNMTIENVASSFVLIIPQETLLK-----TTLISLSSQNKSENQSEDLI 228 NE I +++TI+NV L P +L TT + +S +E E+L Sbjct: 193 VAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLEPLNDKLTTRMWTTSYRHTEEFKENL- 251 Query: 229 DPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 R++ L+ + I L KT L D + L++G VI L + I+ Sbjct: 252 ----RQSLLLSKLNLSAI-LGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIEERPIFK 306 Query: 287 CELGRVGKNYTIRITDR 303 +G+ Y+++I ++ Sbjct: 307 VNVGKSKGFYSVKIVEK 323 >gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] Length = 327 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 56/276 (20%), Positives = 114/276 (41%), Gaps = 26/276 (9%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V + + + + IHS + + +L + Sbjct: 62 FARVLTTHFSAQLRTYVQFTVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEVNP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCISTTQESS 157 N+ +L+ LLG E + ++ N L+ +E + L KR Q A ES Sbjct: 122 NIAYAMLDRLLGGPGEGMNKIEN--LTEIETRILTQLFKRAFVQYGAAW--------ESI 171 Query: 158 PNLEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +E Y D L+ N L NE V +++ +T+ V+ + + +P T L+ + Sbjct: 172 AEIEAEY--DDLEINPQFLQLVSPNETVILVSIYVTVGEVSGTLNVCLPFVT-LEPIIPK 228 Query: 214 LSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVVTLKIGQVIPFL 268 LSS + + +S D + +T + +D + L +T L +++ L++G + Sbjct: 229 LSSHFWMQQEKRKSADNQESEHMQTQLMGSIVDLKAVLGQTELSFGELLHLEVGDCLSLQ 288 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 R L + ++++ G GK+ +++ RI Sbjct: 289 TRTSDPVELFVDDRKMFKARPGLNGKHLALQVLQRI 324 >gi|330447962|ref|ZP_08311610.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492153|dbj|GAA06107.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 627 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 16/123 (13%) Query: 94 NFFIGCSNNLVITLL---ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N F+G + +V L E+L SH T Q RS +L + I ++ +N+ Sbjct: 339 NQFVGNMHQMVTRLRHVSESLNQQSHVTASQAEERS---ARIQLQQDEINMVATAINEMA 395 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + TQE + N E NT R S E VT N T N + + + QE TT Sbjct: 396 AATQEIASNAE----------NTARTSEETVTASNHGATQVNQSQQSISTLAQEVETATT 445 Query: 211 LIS 213 +IS Sbjct: 446 VIS 448 >gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105] gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105] Length = 348 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 42/225 (18%), Positives = 93/225 (41%), Gaps = 23/225 (10%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV +++NL G ++ R + E+++ R + I + + P Sbjct: 120 SLVFAVIDNLFGGDGRFHTRVEGRDFTQTEQRIIARMLEVIREEFVKAWAPVFPLKP--- 176 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 +YL+ + + +N E V T + ++ + S + IP T+ + S Sbjct: 177 -----EYLRSEMHTQFANIATPSEIVVTTSFSIELGAGGGSLHICIPYSTMEPIRDLLYS 231 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 S + + + +K Q+ +D +L T T+ D++ L+IG VIP + Sbjct: 232 SMQGDQAEPDKRWVTMLKKQVQM-AEVDLVASLASTQLTVADIMELRIGDVIPI----EI 286 Query: 274 CAILSA--NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ A + +++C G G Y +++ + + +S + L+ Sbjct: 287 DKVIEARVDNVPVFNCSYGTSGGQYALKVEEVLAVSNESHADALN 331 >gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] Length = 336 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 39/220 (17%), Positives = 92/220 (41%), Gaps = 29/220 (13%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNL 160 NLV +++N+ G ++ R + E+++ I +LN + ++ +P Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRI-------IQGMLNVVFTEYAKAWAPVF 173 Query: 161 EDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASS------FVLIIPQETLLK 208 + +++Y++ N + +N E V + + ++ + + + ++ P LL Sbjct: 174 K--LELEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYSMVEPIRDLLY 231 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 +T+ Q+ Q I +R+ V + + + TL+D+V +++G VIP Sbjct: 232 STM-----QSDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPLQ 286 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 E A + +G + C G + ++ + D+ Sbjct: 287 VSELLQA--TVDGVPVLECRYGTQNGQFAFKVDRFLGPDE 324 >gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17] gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17] Length = 331 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 32/259 (12%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S + Q KF +H+ + + LV L++N G Sbjct: 76 DVSTSGVQIMKFGEYVHTLYVPTSLNLCKIRPLRGTSLFVLDAKLVFKLVDNFFGGQGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R + E ++ + +LNQ QE+ + LK N LS+ Sbjct: 136 -AKIEGREFTPTENRI-------VQMMLNQVFHDMQEAWQTV--------LKVNFEYLSS 179 Query: 179 EFVTTI-------------NMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQS 224 E ++ ++ ++ +P + ++ Q+ ++ Sbjct: 180 EVNPSMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDTD 239 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 E + ++V +++ I + +L++V K G +IP E ++ANG I Sbjct: 240 ERWVSALQEDIKTVSVAVNSTICRRHISLREVAKFKAGDIIPIEMAEHLT--VTANGIPI 297 Query: 285 YSCELGRVGKNYTIRITDR 303 Y+ LG +RI R Sbjct: 298 YTATLGTRDDKLALRIHGR 316 >gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9] gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium profundum SS9] Length = 348 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ +D+ A + ++V ++ R L +L+D++ L+ G +IP Sbjct: 223 PIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++G+ G N ++IT ++ Sbjct: 283 IDVPE--SATVFVEDLPTYRAKMGKSGDNIALKITQKL 318 >gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16] gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16] Length = 339 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 10/207 (4%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G ++ R + E+++ +R + A T P Sbjct: 124 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVH---PIET 180 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQN 218 ++ + K N + NE V T ++ + V + +P + LK L++ Sbjct: 181 EYIRSEMHPKFANVATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDE 240 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 K ++ + + + V + ++T+ +V+ ++ G V+P EK Sbjct: 241 KEVDKG--WVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEKVFG--K 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305 +G + C G + Y +R+ IN Sbjct: 297 VDGVPVMQCGFGTMNGQYALRVERMIN 323 >gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] Length = 339 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 45/261 (17%), Positives = 111/261 (42%), Gaps = 25/261 (9%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASL----SSWSSNFFIGCSNNLVITLLENLLGA 114 ++S + + ++ ++ +N V + ++ SS + I S L+++L++ +LG Sbjct: 79 ELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPDSSKNPPLLINASMTLMLSLIDRMLGG 138 Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174 + + + + +E L +R I I L S S NL +++ L++N + Sbjct: 139 VGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKDSWS----SYINLN--FELSRLEENPS 192 Query: 175 RLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-------SLSSQNKSENQ 223 +E + + +++ ++ + + IP L+ I ++ + S++ Sbjct: 193 MFQEIGVDETIVIVVLDVDMKECSGRLNVCIPGNLLMNIFDIMDKRKHSAMGDEANSQDN 252 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 +++++ ++ + ++ TL DV L +G VI + + L G+ Sbjct: 253 KQEIMNSIKAS----DLLVRAQVGESMITLDDVYNLHVGDVINLGTPKDSDVQLYVEGQP 308 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + +LG +N +RI D + Sbjct: 309 WFRGQLGVHKRNVAVRIEDHV 329 >gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 40/266 (15%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 DI+ TS + + S + F+ S+ N + + +LV +++ LLG + + Sbjct: 81 DITLTSVDQMTYGEFLMSLPDPTSFNIISMIPMEGNAVLEINPSLVFPIVDKLLGGTGK- 139 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTTQ------ESSPNLEDFYDIDY 168 P R L+++E+ + + I V Q I + E+SP++ Sbjct: 140 -PLFQTRELTSLEQHIMDGILGLILKDLEEVWRQIIPNIRLKKELSENSPHIIQIVS--- 195 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN-------KSE 221 NE V + + V L IP +L+ L +SS + + Sbjct: 196 --------QNEVVILVVCEVKFGEVLGMMNLCIPA-IVLEPVLGKISSSDWLIGAKKGLQ 246 Query: 222 NQSEDLIDPFARKTYQLN-VNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + ED I + LN + T I L K T++DV+ L+ G ++ F ++ + Sbjct: 247 GEKEDEI------MHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIH 300 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 N K+ + E+G +G ++IT I Sbjct: 301 FNNKQKFLGEVGTLGVKKAVKITQFI 326 >gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] Length = 376 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 32/240 (13%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++ TS +S I S + F+ + S N + + +++ +++ LLG E Sbjct: 102 VEVKLTSVDQLTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGGGKE 161 Query: 118 TIPQLYNRSLSTVEKKLAKRT---------IAQISAVLNQCISTTQESSPNLEDFYDIDY 168 + P + R L+ +E L R IA + + Q ES+P L Sbjct: 162 SSP-VSRRPLTEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVESNPQLVQIVP--- 217 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP-------QETLLKTTLISLSSQNKSE 221 NE + I+ +TI +V L IP L T + + SE Sbjct: 218 --------PNEVIVLISFELTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSE 269 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + L + + +V + + K T +D++ L++G VI + +S NG Sbjct: 270 ESRQAL----STQIDGASVEVGVTLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNG 325 >gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 350 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 28/217 (12%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV +++NL G + + R + E+++ +R + L S + P Sbjct: 122 SLVFMVVDNLFGGDGRFLTKSEGREFTHTEQRIIRRLLG---LALEAYQSAWKSVYP--- 175 Query: 162 DFYDIDYLK-------KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 +IDYL+ N NE V ++ + N+AS F +++P L+ L SL Sbjct: 176 --LEIDYLRSEMQAKFANITSSPNEIVINSTFHLEVGNLASDFNIVMP--YLMIEPLRSL 231 Query: 215 ------SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S E Q + A + Q + + + V+ LK+G V+P Sbjct: 232 LNGPLNDSHPDEERQWGKRM---ASEIKQSQIELIADFAGIDLCIGQVMALKVGDVLPIE 288 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 E A +G + CE G +++ + I+ Sbjct: 289 LPETVVA--RVDGVPVMRCEYGSRNGQRALQVKELID 323 >gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] Length = 337 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 50/285 (17%), Positives = 102/285 (35%), Gaps = 25/285 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + E D +Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVME--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ +L+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMSLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 LK+G ++P + L +++ E G N ++IT Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] Length = 322 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 E V + M + IE + F PQ L I S + E + D + +K ++ Sbjct: 188 EKVIVVEMILDIEGLEVPFSFAFPQMMFLPLKDIIFSETSSLEIPA-DWKENILKKLSKV 246 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYT 297 +N ++ +++++ L++G I L+ +K +I L GK ++ +LGR K Y Sbjct: 247 ELNFTLELSRFTMLVEELLNLEVGSDI-ILNVKKDDSINLMVEGKPKFTAKLGRYDKKYA 305 Query: 298 IRITDRINFDQ 308 I DR+ ++ Sbjct: 306 AMIVDRVKGEE 316 >gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] Length = 367 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 53/273 (19%), Positives = 111/273 (40%), Gaps = 28/273 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ N + + ++ +++ LLG + E Sbjct: 79 VEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGE 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY-DIDYLKKNTNRL 176 +R L+ +E L + A+L + +ES + D Y +++ + + N + Sbjct: 139 GFEA--SRELTDIEVNL-------LDAILRMMMQRLKESWSMITDMYPNVEAKESSPNVV 189 Query: 177 S----NEFVTTINMNMTIENVASSFVLIIPQ---ETLL-----KTTLISLSSQNKSENQS 224 NE V + M + + N + + P E +L + ++ +S KS N+ Sbjct: 190 QIVSQNEIVIMVVMEIIVGNSSGMINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKE 249 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A Y+ + ++ + + LK G ++ AI++ + KE+ Sbjct: 250 LKTLIGRAEVLYE------AILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEV 303 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + E+G +IRI + I D+ +KN L + Sbjct: 304 FLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 336 >gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM 6578] Length = 341 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 36/72 (50%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + VN+ + ++D+++++ G VI R K +L + + C GRVGK Sbjct: 259 VEVNLVVEVGSMNLKMRDILSIQKGDVIMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLA 318 Query: 298 IRITDRINFDQK 309 +++ ++I Q+ Sbjct: 319 VQLVEKIEESQE 330 >gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda] Length = 337 Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust. Identities = 39/213 (18%), Positives = 89/213 (41%), Gaps = 20/213 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV ++NL G ++ R + E+++ +R +L + +++ + Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQR-------MLRLALDAYRDAWGAIF 175 Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 D+ Y++ N N+ V T + + ++ F + IP + L+ L+ Sbjct: 176 KL-DVKYVRSKIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIGTLRELLV 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + +N S+ + + D +++ + + L DV+ L+IG V+P ++ Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVANFVDVPLRLSDVLKLQIGDVLPIDRPDR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 A + +G + +C+ G Y +R+ IN Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324 >gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] Length = 335 Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust. Identities = 45/240 (18%), Positives = 96/240 (40%), Gaps = 15/240 (6%) Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I S + V + S N + + +LV +++ +LG E I + R L+ Sbjct: 90 YDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRK--PRDLTD 147 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E+ + +R + +I L + ST + E + + + V + + + Sbjct: 148 IERTVVERVMLKILEHLEESWSTVVDIRFRFESMESNPFFVQICP--GTDMVLLVTLKVQ 205 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQN-------KSENQSEDLIDPFARKTYQLNVNI 242 + L IP +++ + LSSQ+ K+ + ++I+ + ++ V + Sbjct: 206 VGEAEGIMNLCIPY-FVMEPMIDKLSSQHWFASTGRKNVEGAREIIEA---RLSKVAVPV 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + +L DV+ L+ G VI + L + + CE G K+Y R+ + Sbjct: 262 ALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLE 321 >gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum] gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 362 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 16/251 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S +F ++S + + W + + + L+ ++++ LLG Sbjct: 109 VEVSLDQISSVRFGDYLNSIPLPAMLAVFKAEEWDNYGLMVIDSALIYSIVDVLLGGRRG 168 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 T ++ R +T+E+ L +R + VL+ + SP + D L+ N Sbjct: 169 TAAMRIEGRPYTTIERNLVER---MVHVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 222 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N V + + + +E+ L+IP TL ++ L+ + K S Sbjct: 223 TIARQANAAV-LVKLRIDMEDRGGRLELLIPYATLEPVRELLLQMFMGEKFGRDSI-WET 280 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + +V++ ++ +L DV+ +IG + L ++ + Sbjct: 281 HLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLLNVAPDDTIELRCGDVPMFLGRM 340 Query: 290 GRVGKNYTIRI 300 GR G N +RI Sbjct: 341 GRKGGNIAVRI 351 >gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 15/191 (7%) Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 V S + + + S ++ TL+E +LG + ++ R + +E L K+ + Q Sbjct: 102 VLSIINFTPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLMRQ 159 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSF 197 + ++ E P L D ++ N+ N+ V + +N+ I +V Sbjct: 160 VINLMVDPWENVIELQPKL------DKIETNSQFAQIVSPNDTVALVTLNLKIGDVEGMM 213 Query: 198 VLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + IP E +L L N S+ +E ++ + VNI ++ T+K Sbjct: 214 NICIPHIVIEPILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVK 273 Query: 255 DVVTLKIGQVI 265 D + L+IG VI Sbjct: 274 DFLELQIGDVI 284 >gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens GS-15] gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens GS-15] Length = 327 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S KF +H+ + I + LV T+++ +LG + Sbjct: 75 VEIKKVGAASFKFDDFLHTMPSPVAMAVYKADPLKGAALIAFDSTLVFTIVDCILGGTGS 134 Query: 118 T-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + +P + NR +++E +L ++ + + A L + Sbjct: 135 SVVPTVGNRMFTSIELRLVQKIVMDVLADLEKA 167 >gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzicola BLS256] Length = 337 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 25/285 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D++Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVMD--------VDLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ +L+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMSLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 LK+G ++P + L +++ E G N ++IT Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVKIT 317 Searching..................................................done Results from round 2 >gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI Sbjct: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP Sbjct: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 Query: 301 TDRINFDQKSLKNFLHKR 318 TDRINFDQKSLKNFLHKR Sbjct: 301 TDRINFDQKSLKNFLHKR 318 >gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 103/316 (32%), Positives = 169/316 (53%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H++ N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L + D + +EF Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LI+PQ LLKT + + ++ S + + + + +V Sbjct: 181 AAAINMSLTLAGIVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEARIRLQDLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 172/316 (54%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV + Sbjct: 1 MTMSNASHDKPAMDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L + +D + +EF Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LI+PQ LLKT + + ++ +S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 171/316 (54%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV + Sbjct: 1 MTMSNASHDKPAMDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L Y D + +EF Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LI+PQ LLKT + + ++ + S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42] gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 168/316 (53%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +FLP I K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY C+ G +H++ N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 SYLGCEIGYKNHLVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R LS +E LA +I+ VL ++ P+L + D + +EF Sbjct: 121 EPAERLLSVIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LIIPQ LLKT + + ++ S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512] Length = 314 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 169/310 (54%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ Sbjct: 5 SHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCE 64 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 G +H++ N A+L +WS N + C N VITL+E+LLGA+ ETI + +R Sbjct: 65 IGYKNHLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRL 124 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 LS +E LA +I+ VL ++ P+L + D + +EF INM Sbjct: 125 LSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINM 184 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++T+ + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI Sbjct: 185 SLTLAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARI 244 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N Sbjct: 245 RLQDLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNS 304 Query: 307 DQKSLKNFLH 316 D + +++ ++ Sbjct: 305 DDELIRHLMN 314 >gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84] gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84] Length = 314 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M QS H + + P+L A+LTG LGD T+ K+ ++ G +Y +FLP I K + LDV + Sbjct: 1 MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Y C+SG S ++ N SL +WS NF +GC V+TL+E+LLGA ETI Sbjct: 60 GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R LS +E L+ +I+ VL ++ T P L+ Y+I+ +++F Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I M +++ S V+I+PQ LL+T + + ++N S + + + + V Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSASTGA-WAEQLNEQVRRSQV 238 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL + L +G VIPF+ +SAN K++Y CE GR G+NYT+R+ Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + L++ ++ Sbjct: 299 KDTVNSDDELLRHLMN 314 >gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 170/316 (53%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + + P LLA+LTG LGDK + KI SS G +Y +F P + K + L+V + Sbjct: 1 MTMSNASHDKPAMDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N +L +WS N I C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L + ++ + +EF Sbjct: 121 EPADRLLSIIEMDLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F L++PQ LLKT + + ++ S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 208/317 (65%), Positives = 254/317 (80%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++ Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300 Query: 301 TDRINFDQKSLKNFLHK 317 DRINFDQ+SL+NFLHK Sbjct: 301 QDRINFDQESLRNFLHK 317 >gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4] gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4] Length = 319 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 169/305 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ LLARLTG LGD K++EK+ G LY +FLP +F + +L +++ Y +SG Sbjct: 15 PMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLMR 74 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 +I S +NFV + SL +WS NF + C N VITL+E LLG E I + R LS +E Sbjct: 75 DLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNIE 134 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ T P E ++ + + EF ++M++ + Sbjct: 135 LDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKLG 194 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LIIPQ+TLLKT + + S+N+ ++ + A + + V ++ RI+L+ Sbjct: 195 KITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQSL 254 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 +L V L G VIPFL + +SANG+++Y+CE GR G +YT+R+ + D + L Sbjct: 255 SLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSELL 314 Query: 312 KNFLH 316 ++ + Sbjct: 315 RHLMR 319 >gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 315 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNDLIAALGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] Length = 315 Score = 305 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 157/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + N LLAR+ G LGD K I++++ L ++ + LP + + + DV I+Y Sbjct: 4 NTASNIHAFDKRLLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + ++ + + SL +W ++F IGC + ++I L+E LLGA I + Sbjct: 64 FRAGLRNELVAGLGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + + +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT +S K +N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTIARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] Length = 315 Score = 305 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] Length = 315 Score = 305 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] Length = 319 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 14 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 73 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 74 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 133 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 134 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 193 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 194 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 253 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] Length = 315 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 157/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N LLAR+TG LGD KTI + + LG+++ + LP++ K++ D+ I Y Sbjct: 4 STDSNVYAFDKKLLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + G + +I E + S SL +W + F IGC + ++I L+E LLGA I + Sbjct: 64 VKMGFRNELIADLGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R+LS +E +A +I+ + + P + ++ L + + +I Sbjct: 124 RALSKIEIDVAVPVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + V S+F +IIPQ LLKT ++ + ++E+ D + + + V ++ Sbjct: 184 DMTFGLGPVLSTFSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + ++ANG+++Y CE GR G YT+R+ D Sbjct: 244 RIQLESLTLDTISRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM Length = 321 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315 Query: 311 LKNFL 315 L++ + Sbjct: 316 LRHLM 320 >gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens] gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens] Length = 321 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315 Query: 311 LKNFL 315 L++ + Sbjct: 316 LRHLM 320 >gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3] gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] Length = 319 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI K+ S +G+LY +FLP IF + + +D+ Y +SG + Sbjct: 14 IDTSLLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTD 73 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + NF + SL +W NF + N VI L+E +LGA+ +TI + RSLS +E Sbjct: 74 LIANIGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIEL 133 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I VL ++ ++ + + ++ + T+ M + I Sbjct: 134 DLAAMVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGK 193 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++ + + ++ + + +D + + + V ++ RI L+ T Sbjct: 194 VSSEFALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLT 253 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 128/315 (40%), Gaps = 28/315 (8%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 I + P+ P+L R+ D ++K IS + Sbjct: 25 ISVDRLPMLPVLFDRMARVFADA---------------------MRQKSTSPSYISVSCI 63 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + ++ ++ N + + W + +G + + T+++ L GA P R Sbjct: 64 ENERIGDVLDEYEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEER 123 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTI 184 S S +E ++A+ + L + S E++ +E +D+ R +N V Sbjct: 124 SFSNIETRIARSVFEVAAKALQESFSPIAETTLKIERVESRMDF--AVVGRRNNPAVVA- 180 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + +++P TL L+ L + S S + + F + + V + Sbjct: 181 RLLLQAIGRGGEIFVVMPHSTLNPLRQRLSQVLSGEMSG-RDKQWTQHFQTEIQRTEVRL 239 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ++ TL ++ L++GQ+I ++ L N + I++C LG++ +YT+++ D Sbjct: 240 QAVLEERELTLGEIANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVED 299 Query: 303 RINFDQKSLKNFLHK 317 I+ ++ + + L + Sbjct: 300 LIHLEKDIVDDLLSR 314 >gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] Length = 315 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 2/313 (0%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + +T P LL R+ G GD IE SL L + F+ ++ + Sbjct: 4 SAKDSKTDTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSAR 63 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q G ++ F ++ VF + WS + C LVI ++E LLG S Sbjct: 64 PGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELD 123 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R LS +E ++ Q++ L + S + +D + + + Sbjct: 124 IAARPLSGIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKPM-LDIPEAEDDPKPDFHA 182 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 I + + +V + LI+PQ LLKT I+ S +N +D + + + +N Sbjct: 183 AAITLELQFGSVVTPLTLILPQSILLKTKPIT-SKKNAPNAVDDDWAERLNARVSRSQIN 241 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + L + ++ L++G +I F LSANGK +Y+C LG+ G Y +++ Sbjct: 242 LQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVE 301 Query: 302 DRINFDQKSLKNF 314 D+ +F Sbjct: 302 GDAGPDENWRSDF 314 >gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] Length = 319 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 126/315 (40%), Gaps = 26/315 (8%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 I + P+ P++ R+ + + ++K IS + Sbjct: 29 ISVDRLPMLPVVFDRMAR---------------------LMADVMRQKSPSPSYISVSYV 67 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + ++ F+ N + + W + +G + + TL++ L GA P R Sbjct: 68 ENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDEER 127 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 S +E ++A+ + L + + E++ +E + SN Sbjct: 128 PFSNIETRIARTIFEIAAKSLAESFAPIAETTLKIERIES--RMDFAVVGRSNNPAVVGR 185 Query: 186 MNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + +++P TL L+ L + S S + + F + + V ++ Sbjct: 186 LLQQAIGRGGEVFVVLPHATLNPLRQALSQVLSGEMSG-RDKQWTQHFHNEIQRTEVKLE 244 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + ++ L ++ LK+GQVI ++ L+ N + I++C+LG++ +YT++I + Sbjct: 245 AILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQLGQLDGSYTLQIEEL 304 Query: 304 INFDQKSLKNFLHKR 318 I+ ++K L + L R Sbjct: 305 IHEEEKDLFDDLRNR 319 >gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] Length = 319 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 131/316 (41%), Gaps = 28/316 (8%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 I + P+ P++ R+ + ++K IS + Sbjct: 29 ISVDRLPMLPVVFDRMAR---------------------LMADAMRQKSPSPSYISVSYV 67 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + ++ F+ N + + W + +G + + TL++ L GA P R Sbjct: 68 ENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDDER 127 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTI 184 S +E ++A+ + L + + E++ +E +D+ R +N V Sbjct: 128 PFSNIETRIARTMFEVAAKALAESFAPIAETTLKIERIESRMDF--AVVGRRNNPAVVA- 184 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + +++P TL L+ L + S S ++ + F + + V + Sbjct: 185 RLLQQAIGRGGEVFIVMPHSTLNPLRQRLSQVLSGEMS-SRDKQWTQHFHNEIQRTEVKL 243 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + ++ +L D+ L++GQVI ++ L+ N + +++C+LG++ +YT++I + Sbjct: 244 EAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQLGQLNGSYTLQIDE 303 Query: 303 RINFDQKSLKNFLHKR 318 I+ ++K L + L R Sbjct: 304 LIHEEEKDLFDDLRNR 319 >gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] Length = 344 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D S++ S + +SG Sbjct: 59 DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 97 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 98 RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 157 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 158 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 215 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L E+ + D + A + + V + + Sbjct: 216 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 274 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN Sbjct: 275 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 335 EKEGGHGLL 343 >gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 335 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D SS+ S + +SG Sbjct: 50 DRLPMLSVVFDRLATACSDAAKHFAASSTF---------------------YSLSGVESG 88 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V + W + +G + + T++E L G+ P R+ S Sbjct: 89 RFGEFLDAYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPPVEDERTFS 148 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 149 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-TETRMEFAVIGRRSNKAVQA-KFLL 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L+ E+ + D A + + V + + Sbjct: 207 QALNRGGEMFLIIPQ-TVLNPLRPALAKVLTGESAARDPRWAQQIAAEVQKTTVRLRAVL 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ Y +R+ D IN Sbjct: 266 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGAYVLRVEDAINP 325 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 326 EKEGGHGLL 334 >gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] Length = 344 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D S++ S + +SG Sbjct: 59 DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 97 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 98 RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 157 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 158 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 215 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L E+ + D + A + + V + + Sbjct: 216 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 274 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN Sbjct: 275 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 335 EKEGGHGLL 343 >gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 340 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D S++ S + +SG Sbjct: 55 DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 93 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 94 RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 153 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 154 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 211 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L E+ + D + A + + V + + Sbjct: 212 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 270 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN Sbjct: 271 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 330 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 331 EKEGGHGLL 339 >gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 303 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 28/314 (8%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P+ ++ RL D +L +L + S S + Sbjct: 15 SPDRLPMLNVIFDRLATACAD---------NLKHLAV------------SPIFYSLMSVE 53 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 SG F ++ ++ N V W + +G + V T++E LLGA P R+ Sbjct: 54 SGLFGDLLEPYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPPVEEARN 113 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTIN 185 S++E ++A+ T QI L + ++ LE +D+ R SN+ V Sbjct: 114 FSSIELRIAQMTFEQIGKALEAAFALVSVATLKLERTETRMDF--AIIGRRSNKAVAA-K 170 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243 + N LIIPQ +L SLS E+ S D + + + V + Sbjct: 171 FLLQALNRGGEMFLIIPQA-VLNPMRQSLSKVLTGESTSRDPRWEKQISTEVRKTEVTLR 229 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TL ++ LK+GQV+ ++ L N + ++ C++G+ Y +R+ D+ Sbjct: 230 AVLEERTLTLGEIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQVGQANGAYVLRVEDQ 289 Query: 304 INFDQKSLKNFLHK 317 I+ D++ + L + Sbjct: 290 IDQDKEFMDGVLAR 303 >gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099] gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti MAFF303099] Length = 315 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 128/312 (41%), Gaps = 9/312 (2%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + + L K ++ + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + F + + S+ S + + ++ L G ET Sbjct: 62 VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ Q++ LN + + L + + + L + I Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALNGSGRRSLD--LRLPVPRAMSGTEAKRHVLRDGAALRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ + + + +PQ +L + + S+ S + F+ + + V ++ Sbjct: 180 VLGISTPADSGTVTVTMPQRIVLASRDSAASTAGDDHGPS--WRERFSEEVMRSTVALEA 237 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + TL D+ +L++GQVI F ++ A LSA G+ ++ CE G++G+NYT+RI Sbjct: 238 TMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRIRHPF 297 Query: 305 NFDQKSLKNFLH 316 + Q + + Sbjct: 298 DAGQDFIDGLMP 309 >gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] Length = 309 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 113/311 (36%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL + ++ S +S ++G Sbjct: 23 DRMPMLHVIFDRL---------------------GTLCAEGLRQLAASQAFYSLSSIETG 61 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + ++ ++ V + W S+ +G + V T++E L GA P RS S Sbjct: 62 RIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPPVDDERSFS 121 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++++ Q+ L+ + ++ E + N T + Sbjct: 122 NIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQET--RMDFAVIGRRNNLAVTAKFLL 179 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N +IIPQ L +L+ +E D + + V + + Sbjct: 180 QALNRGGEMFVIIPQSALTPM-RQALARTTPAETSGRDPIWTKQIRDEVNRTQVKVRAIL 238 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + L ++ K+GQV+ +T L + + ++ C LG+ Y +R+ ++IN Sbjct: 239 EERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQAEGAYVLRVEEQINL 298 Query: 307 DQKSLKNFLHK 317 +Q+ + + L + Sbjct: 299 NQEFVDDILPR 309 >gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 311 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 113/309 (36%), Gaps = 28/309 (9%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ ++ ++T + + S + S + S Sbjct: 28 PMLHVIFDQMT---------------------NLCAEALRSMSPSQSYFSLSGVGSDRLS 66 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 I+ ++ + + +W + IG + + T++E L GA P R S VE Sbjct: 67 DIVDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVE 126 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTINMNMTI 190 +A+ + L S + + LE +DYL RL+N V N+ + Sbjct: 127 MHVAQALFERFGKALQSSFSRASDVNFTLERVETRMDYLA--VGRLNNMAVCA-NILLQG 183 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINL 248 + ++IP L +LS E+ S D + + V + + Sbjct: 184 LDRGGEMFIVIPHAA-LNPIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEE 242 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + TL +V +GQVI T L N + ++ C+LG++ Y++++ + + + Sbjct: 243 RPFTLGEVAGFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKR 302 Query: 309 KSLKNFLHK 317 + + L + Sbjct: 303 EFIDGILSR 311 >gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 275 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 105/279 (37%), Gaps = 7/279 (2%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + S + S + S I+ ++ + + +W + IG Sbjct: 1 MTNLCAESLRSMSPSQSYFSLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDR 60 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + + T++E L GA P R S VE +A+ + L S + + L+ Sbjct: 61 DFIYTMIELLFGADGAEPPLDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLD 120 Query: 162 DFYD-IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +DYL R +N V+ + + + ++IP L +LS Sbjct: 121 RVETRMDYLA--IGRPNNMAVSAQILLQGL-DRGGEMFIVIPHAA-LNPIRTALSQIVTG 176 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E+ S D + + V + + + TL +V +GQVI T L Sbjct: 177 ESASTDPNWSRQLHSEIQRTEVVLRAVLEERPFTLGEVAKFHVGQVIKLNATPNTMVRLE 236 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 N + ++ C++G++ Y++++ + + ++ + L + Sbjct: 237 CNNQRLFWCQMGQLNGAYSLQVKESADQKREFIDGILSR 275 >gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 315 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 116/301 (38%), Gaps = 4/301 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ RL G G+ + ++ L K + + V + + + + Sbjct: 13 LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + F + S+ S + + ++ L G + R LS +E ++ Sbjct: 73 RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 Q++ LN + + L + + L + I + ++ + Sbjct: 133 TMVFQQVAQALNGSGKRSLD--LRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 + + +PQ +L + ++ + S F+ + + V ++ + L + TL D Sbjct: 191 TVTVTMPQRVVLASRDGAVPVSDDDHGPS--WRARFSEEVMRSTVALEATMPLARLTLGD 248 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + +IG VI F ++ A LSA GK ++ CE G++G+NYT+RI + Q + + Sbjct: 249 LAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDFIDGLM 308 Query: 316 H 316 Sbjct: 309 P 309 >gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 309 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 113/279 (40%), Gaps = 5/279 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 F + V S ++ +S +F I+ ++ N + W S+ +G Sbjct: 34 RVATFCADQLRHFAASPVYFSLSNVESQRFGDILEPYESNAIAGIFQAPEWDSHILVGFD 93 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + + T++E LLG+ P RS S +E ++A+R Q+ + + ++ L Sbjct: 94 RDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVADTPFKL 153 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 E ++ R +N+ V + N ++IPQ +L SL+ Sbjct: 154 ER-TELRMDFAVIGRRNNQAVAA-KFLLQALNRGGEMFIVIPQS-VLNPMRQSLARILVG 210 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E + D A + + V + + K L ++ L +GQV+ ++ L Sbjct: 211 ETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRVKLV 270 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 N ++++ C++G+ +R+ I+ DQ+ + + L + Sbjct: 271 GNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309 >gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] Length = 315 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 122/312 (39%), Gaps = 9/312 (2%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + ++ L K + + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + +NF + + S + + ++ L G + Sbjct: 62 VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ +++ LN + L + ++ + L + I Sbjct: 122 RDLSPLEADVSTMVFQEVAQALNGSGQRS--LELRLPAPRAMSGIEARRHVLRDGAAIRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ + S +++PQ +L S+ S F+ + + V ++ Sbjct: 180 VLGISTPVDSGSITVMMPQRIVLAGRDGIASASEADPGTS--WRARFSEEVMRSTVALEA 237 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + TL D+ L++GQVI F ++ A L A G+ ++ CE G++G+NYT+RI Sbjct: 238 TMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYTVRIRHPF 297 Query: 305 NFDQKSLKNFLH 316 + Q + + Sbjct: 298 DAGQDFIDGLMP 309 >gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110] gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 5/279 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + S + + II ++ N V + W S I Sbjct: 38 RMAASCTDSLQPMAGTPCYFSVNGITNDRVGDIIKDYEANAVAAVLYAEQWDSRIIIMLD 97 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V T++E + G+ P RS S +E +L + + + L + T + + Sbjct: 98 RDFVFTMVEAMFGSDGAEPPLDVERSFSNIEIRLVQALFERFAKALQSAFAGTSNVTFRV 157 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 E R N + M + LIIP L L+ S Sbjct: 158 ERVET-AMASLAIGRSGNMSICANIM-LQALYRGGQMFLIIPHSA-LNPLRQKLAHVVVS 214 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + ++ D + + ++ V + ++ K TL DVV ++GQV+ +T A L Sbjct: 215 DGRASDPRWREQMESEVHRTEVTLSAVLDEKMVTLGDVVKFQVGQVLELEATPRTLARLE 274 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +N + ++ C++G++ Y +++ D ++ ++ + + L + Sbjct: 275 SNNQVLFWCQIGQLDGYYAMQVADPVDQKREFVDDILSR 313 >gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] Length = 313 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 111/307 (36%), Gaps = 24/307 (7%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ R+ + + ++ + +S + Sbjct: 27 DRMPMLHVIFDRMVAQCSE---------------------SLRQYSAAPAVFTVSSIGTE 65 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + I+ +++ N V + + +W S +G + TL+E G P + R LS Sbjct: 66 RIGDILDAYENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLS 125 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E KLA+ + L ST E+ E L N F +N+ Sbjct: 126 NIEIKLAQTIFDLLPKALQTSFSTISETVFKFERLET--KLDFAVIAPRNTFGFITRINL 183 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I ++IPQ +L N + + + + V + I Sbjct: 184 RILGRHGEMFVVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIE 243 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L D LKIGQV+P K+ A L N + ++ C++G+ YT+R+ D I+ + Sbjct: 244 DSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQE 303 Query: 308 QKSLKNF 314 + ++ Sbjct: 304 KDFIEGI 310 >gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti] Length = 258 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 125/254 (49%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC ++I L+E LLG + +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A ++I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVT 258 RI L+ TL + Sbjct: 244 RIRLESLTLDTLSR 257 >gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 321 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 127/311 (40%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ R+ + D T+ +++++ YL S + Sbjct: 35 DRLPMLHVVFDRMARQYID--TLRQMAATAPYLA-------------------VQSVSNE 73 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + +++ V + W + +G + +++E LLG E P L +RSL+ Sbjct: 74 RIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLT 133 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 VE++LA R + + L ++S +E + T R SN V M Sbjct: 134 NVEQRLAYRMFEEAATALETAFEAIADTSLKVERLEN-RMEFAQTGRKSNPCVLA-KMTA 191 Query: 189 TIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I +IIPQ L L+ L + S + F ++ + V + + Sbjct: 192 EIIGREGEIFIIIPQSVLNPLRENLTQVLSGE-VAGRDTRWTKQFQQEVQRTEVKLTAIL 250 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ TL++V ++G V+ KT L N + +++C LG+V +YT+R+ + I Sbjct: 251 EEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQ 310 Query: 307 DQKSLKNFLHK 317 + + L + L Sbjct: 311 EGELLDDILSN 321 >gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] Length = 342 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + E Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQ-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID I K TL++V+ K G VIP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL Y C++G+ N ++I ++I + Sbjct: 287 H--IILKVEDLPTYRCKMGKAKDNLALKICEKIPRPETVKTEL 327 >gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] Length = 343 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTGLITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D+ A + ++V ID I ++ TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDTQDTDMRWSLALKDEIMDIDVGIDATIVEQQITLKDVMEFKAGDIIPVELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +L Y C+LG+ N +RIT++I + Sbjct: 288 H--IVLRVEDLPTYRCKLGKTRDNLALRITEKIPRPETVKSEL 328 >gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3] gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3] Length = 342 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID + + TL+DV+ K G VIP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATVVEHQVTLRDVLEFKAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL Y C++G+ +N ++I ++I + Sbjct: 287 H--IILKVEDLPTYRCKMGKTKENLALKICEQIQRPETVKSEL 327 >gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] Length = 342 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + + I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFNPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVISSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + +NV +D + + TLKDV+ LK G +IP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALKDEIMDVNVGLDATVVEHQITLKDVMELKQGDIIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL + C+LG+ N +R+ +I + + Sbjct: 287 H--IILRVEDLPTFRCKLGKARDNLALRVIQKIPRPETAKSEL 327 >gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678] Length = 342 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D I + TLKDV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIHEKIPRPETVKSEL 327 >gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] Length = 342 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVQ-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID I K TLK V+ K G VIP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL Y C++GR +N ++I ++I + Sbjct: 287 --YIILKVEDLPTYRCKMGRTKENLALKICEQIPRPETVKTEL 327 >gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223] gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223] Length = 342 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D I + TLKDV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIHEKIPRPETVKSEL 327 >gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175] gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175] Length = 342 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D I + TLKDV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 327 >gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] Length = 342 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FEYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TL+DV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDVNVVEHEVTLRDVMGFKAGDIIPIDLPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ G Y C++G+ N ++I+++I + Sbjct: 287 H--IMMRIEGLPTYRCKMGKSRDNLALKISEKIPRPETVKTEM 327 >gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] Length = 341 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 55 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 114 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 115 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 173 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 225 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V +D I K+ +LKDV+ K G +IP E Sbjct: 226 LDAGVQSDTQDTDMRWSQALKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPE 285 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +L Y C+LGR +N + I ++I + Sbjct: 286 --YIVLRVEDLPTYRCKLGRSRENLALNIREKIPRPETVKTEL 326 >gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200] Length = 343 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDACVVEHELTLKDVMNFKAGDIIPVELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKTEL 328 >gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1] gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1] Length = 343 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMRIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328 >gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] Length = 343 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328 >gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] Length = 357 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 100/283 (35%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M + ++S Q KF +H+ + I Sbjct: 56 ERFARHLRISLFNMMRRNAEVSINGVQMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + + + + + Sbjct: 116 EARLVFILVDNFFGGDGRFQAKIEGREFTPTERRIIQLLLKTVFEDYKESWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDGGGGDFHITLPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V++ T + ++ TL+D++ +K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWAKALQDEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ + +LGR G N +RI +RI + Sbjct: 287 H--LLVRIEDLPTFRGKLGRKGDNVAVRIEERIPRPKSYKNEL 327 >gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] Length = 341 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 55 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 114 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 115 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 173 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 225 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID I + TLKDV+ K G VI E Sbjct: 226 LDAGVQSDTQDTDMRWSQALKDEIMDVDVGIDATIVEHQVTLKDVMEFKQGDVITVELPE 285 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C+LG N +RI + I + + Sbjct: 286 H--IVMRVEDLPTYRCKLGTARDNLALRICETIPRPETAKNEL 326 >gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] Length = 343 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328 >gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 348 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 97/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 62 ERFARHLRISMFNMMRRAAEVSINGVQMIKFGEYVHTLFVPTSLNMVKFSPLKGTGLITM 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 122 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 179 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 180 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 232 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V ID I ++ LKDV+ + G +IP E Sbjct: 233 LDAGVQSDTQDTDKRWSMALKDEIMDIKVGIDATIVDQEIALKDVMKFRAGDIIPVDLPE 292 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +L Y C+LG+ N +RI ++I + Sbjct: 293 H--IVLRVEDLPTYRCKLGKSRDNLALRIIEKIPRPKTVKTEL 333 >gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] Length = 314 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 112/311 (36%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++L R+ I + S +L L S + + Sbjct: 28 DRMPMLHVILDRM---------IAQCSENLRQLSAP------------PAFFSVDTVAAR 66 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + ++ +++ +W S IG ++ + TL E L G P R LS Sbjct: 67 RVGDVLDAYENKVAIGVYHALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLS 126 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 ++E +LA + + L ST +++ LE L N F T + + Sbjct: 127 SLELRLAHKALDLFGRALQSAFSTVSDTAFKLERVET--RLDFAVIAPRNAFGVTAKIKL 184 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++IPQ L + L + D + + + + I Sbjct: 185 RILGRHGEMFILIPQAA-LNSVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVI 243 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + L D+ LK+G ++ T L N + ++ C LG+ YT+RI + ++ Sbjct: 244 EERHFLLGDIADLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSR 303 Query: 307 DQKSLKNFLHK 317 +Q+ + L + Sbjct: 304 EQEFVDEMLSR 314 >gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56] Length = 209 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 113/209 (54%) Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 +E+LLGA+ +TI + +R LS +E LA +I+ VL ++ P+L + D Sbjct: 1 MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + +EF INM++T+ + S F LI+PQ LLKT + + ++ S + Sbjct: 61 TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + +V ++ RI L+ TL+ + L +G VIPF + +SAN KE+Y C Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316 E GR G+NY +R+ D +N D + +++ ++ Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLMN 209 >gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] Length = 400 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E L KR I + A Q Sbjct: 174 STLIYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVRFT 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + FA + + V +D + LK ++ LK+G +P R + Sbjct: 292 EKFG-RDPVWEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 351 RCGNTMLTEGRMGRVGDRVAIRVTKNLRKPHTTLAMF 387 >gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 364 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 60 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 178 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + TR+ K +L+ ++ L+ G VIP E Sbjct: 231 LDAGVQSDTEDTDLRWSKALRDEIMDVEVGLSTRMLEVKLSLEQIMNLQAGDVIPVEMPE 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++GR N ++I+++I S+K+ +H Sbjct: 291 H--ITVFIEDLPTFRAKMGRSRDNVALQISEKI-KRPDSVKSEMH 332 >gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] Length = 342 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVNSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V + + + +L+DV+ ++ G VIP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C+LG+ + ++I ++I + Sbjct: 287 --YVLMKIEELPTYRCKLGKSREQLALKICEKIPRPETVKTEL 327 >gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] Length = 400 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E L KR I + + Q Sbjct: 174 STLIYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLSDAEQAFRPLSPVRFT 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + FA + Q V +D + LK ++ LK+G +P R + Sbjct: 292 EKFG-RDPVWEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 351 RCGSTMLTEGRMGRVGDRVAIRVTKNLRKPNTTLAMF 387 >gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA 110] gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 108/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V++S S +F ++S V S W + Sbjct: 114 RLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWDNFGMATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG + ++ R +T+E +L KR + + A Q + Sbjct: 174 SNLIYSMIDVLLGGRRGTSQLRIEGRPYTTIETELVKRLVEVVLADAEQAFRPLSPVTFT 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLRIDMEDRGGNIELLLPYATIEPIRGVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + FA + Q +++D + LK ++ LK+G +P R + Sbjct: 292 EKFG-RDPVWEGHFATEIGQAEISVDAVLYEADIPLKQLMRLKVGDTLPLDMRADANVTV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 I +GRVG IR+T + +L F Sbjct: 351 RCGDVTITEGRMGRVGDRVAIRVTKPLRKPSTTLAMF 387 >gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 311 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 108/315 (34%), Gaps = 10/315 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + P+ +++ RL G GD + + + + + L IF+ K + + Sbjct: 2 KAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIA 61 Query: 64 SCQSGKFSHI---IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + SF V + + L+ LLG + P Sbjct: 62 GVEVVRLAELKPEPDSFDALVVIPATDSRDALTMRL---DAQALSLLVSILLGGDPDIPP 118 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 +R S +E +A+ + LN S + + + Sbjct: 119 SPLDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPG-DFKRFLVRDGP 177 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ V+ +P +LK + + + Q F + + V Sbjct: 178 GIRIAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQ---WKQRFGEEVRRSTV 234 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + I L K L + LK GQV+ LS + ++ CE GR+G+NYT+RI Sbjct: 235 QVTATIPLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI 294 Query: 301 TDRINFDQKSLKNFL 315 + Q L L Sbjct: 295 RQPFDDRQAVLDGLL 309 >gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 403 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 109/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +FS ++S V S W + Sbjct: 117 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMNSIPLPAVLSVFKAEEWENFGLATVD 176 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + Sbjct: 177 SSLIYSMIDVLLGGRRGQTSMRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFK 236 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 237 IDRLET-NPRFAAITRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMG 294 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q +++D + + LK +++LK+G +P R + Sbjct: 295 EKFG-RDPIWEGHLATEITQAQISVDAVLYEAELPLKQLMSLKVGDTLPLEMRPDALVSV 353 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRV IR+T ++ + F Sbjct: 354 RCGSVILTEGRMGRVADRVAIRVTKQLRKPNTTYAMF 390 >gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] Length = 363 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 96/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V++ T++ TLK ++ LK G +IP E Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQLLEVDLTLKQIMELKAGDIIPVEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+++I Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDNVALQISEKIKRPDSVKSEL 330 >gi|315127312|ref|YP_004069315.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] gi|315015826|gb|ADT69164.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] Length = 363 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V++ T++ +LK ++ LK G +IP E Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVDLSTQLLEVDLSLKQIMELKAGDIIPVEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+++I Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDNVALQISEKIKRPDSVKSEL 330 >gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] Length = 399 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 108/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F+ ++S V + W + Sbjct: 113 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVD 172 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + Sbjct: 173 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFT 232 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 233 IDRLET-NPRFAAISRPAN-AAILVRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMG 290 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + +D + LK +++LK+G +P R + Sbjct: 291 EKFG-RDPIWEGHLATEIAKAEMYVDAVLYEADMPLKQLMSLKVGDTLPLDIRPDAMVSV 349 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ ++ + F Sbjct: 350 RCGDVTLSEGRMGRVGDRVAIRVSKPLHKPHTTYAMF 386 >gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis TAC125] gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 363 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T++ TLK ++ LK G +IP E Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVELSTQLLEVDLTLKQIMELKAGDIIPVEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR + ++I+++I Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDSVALQISEKIKRPDSVKSEL 330 >gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q S + Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q ++++D + + L+ ++ L++G +P R + Sbjct: 292 EKFG-RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 351 RCGSVVLTEGRMGRVGDRVAIRVTKPLRKPLTTYAMF 387 >gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] Length = 401 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVD 174 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG ++ ++ R +T+E L KR + + A Q S + Sbjct: 175 SSLIYSMIDVLLGGRRGQSSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVSFS 234 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 235 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 292 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + L+ ++TLK+G +P R + Sbjct: 293 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLRQLMTLKVGDTLPLEMRPDASVAV 351 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ + + F Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVSRHLRKPSTTFAMF 388 >gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] Length = 398 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 111/277 (40%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F+ ++S V + W + Sbjct: 112 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVD 171 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + Sbjct: 172 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFT 231 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 232 IDRLET-NPRFAAISRPAN-AAILVRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMG 289 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + LK +++L++G +P R + Sbjct: 290 EKFG-RDPIWEGHLATEIAQAELYVDAVLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSV 348 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ +GRVG IR++ ++ + + F Sbjct: 349 RCGDVKLSEGRMGRVGDRVAIRVSKPLHKPRTTYAMF 385 >gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] Length = 401 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 110/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +FS ++S V W + Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMNSIPLPAVLCVFKAEEWQNFGLATVD 174 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q + + Sbjct: 175 SSLIYSMIDVLLGGRRGQAAIRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVAFS 234 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 235 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 292 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q ++++D + + L+ ++ L++G +P R + Sbjct: 293 EKFG-RDQVWEGHLATEIGQADISVDAVLYEAEVPLRQLMALQVGDTLPLDLRADALVAV 351 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVTKPLRKPVTTYAMF 388 >gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] Length = 401 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 106/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVD 174 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + + Sbjct: 175 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFS 234 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 235 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 292 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + LK ++ LK+G +P R + Sbjct: 293 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMALKVGDTLPLDMRPDASVAV 351 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ + + F Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVSRHLRKPNTTFAMF 388 >gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] Length = 400 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q S + Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q ++++D + + L+ ++ L++G +P R + Sbjct: 292 EKFG-RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 351 RCGSVVLTEGRMGRVGDRVAIRVTKPLRRPLTTYAMF 387 >gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] Length = 400 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 108/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q + + Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVAFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q +++D + + LK ++ L++G +P R + Sbjct: 292 EKFG-RDQVWEGHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPLDLRADALVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 351 RCGSVTLTEGRMGRVGDRVAIRVTKPLRRPVTTYAMF 387 >gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 404 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 105/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +FS + S V S W + Sbjct: 118 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMSSIPLPAVLSVFKAEEWENFGLATVD 177 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG + ++ R +T+E L KR + + A Q + Sbjct: 178 SALIYSMIDVLLGGRRGQASMRVEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFK 237 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 238 IDRLET-NPRFAAITRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMG 295 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + + Q +++D + + LK ++ LK+G +P R + Sbjct: 296 EKFG-RDPIWEGHLSTEIAQAEISVDAVLYEAEIPLKQLMRLKVGDTLPLELRADALVAV 354 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRV IR+T ++ + F Sbjct: 355 RCGNVTLTEGRMGRVADRVAIRVTKQLRKPNTTYAMF 391 >gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 352 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF +H+ + + Sbjct: 63 ERFARHLRISLFNMLRHTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTM 122 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + I + + Sbjct: 123 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKDAWAPVMTA--- 179 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N E + + ++ ++ F + +P +L+ Sbjct: 180 -----DFEYLDSEVNPAMANIVSPTEVIVVNSFHIELDGGGGDFHIAMPYS-MLEPIREL 233 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + ++V + ++ K+ L+D++ +G +IP E Sbjct: 234 LDAGVQSDKEDTDQRWSQALEDEIMDVDVYLTAKLLEKQLPLRDMINWSVGDIIPVELPE 293 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + G + +LG+ N ++I DRI + Sbjct: 294 ELLVCV--EGLPSFHAKLGKSNDNLALKIIDRIKRPE 328 >gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp. salmonicida A449] gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 356 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ TL++++ LK G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETDLTLRELMELKPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++GR N ++ITD++ + +K +H Sbjct: 288 NLLVYV--EDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 400 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 106/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q S + Sbjct: 174 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVSFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + LK ++TLK+G + R + Sbjct: 292 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMTLKVGDTLALEMRPDASVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ + + F Sbjct: 351 RCGSVTLTEGRMGRVGDRVAIRVSRNLRKPNTTFAMF 387 >gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 354 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 58 ERFARHMRVSLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDV--- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 175 -----GFEYLDSEVNPAMANIVSPTEVIVISSFHIELDGGGGDFHIALPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D+ A + ++V ++ L TL++V+ + G +IP + Sbjct: 229 LDAGVQSDKEDTDMRWSKALRDEIMDVPVEMVAKLADVDVTLREVMDFEEGDIIPLEVPD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+D+I + + Sbjct: 289 N--LTVFIEDLPTFHAKMGRSRDNIALKISDKIRRPETVKSDI 329 >gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 356 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ + TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + ++GR N ++ITD++ + +K +H Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 356 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ + TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + ++GR N ++ITD++ + +K +H Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565] gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565] Length = 356 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ + TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELRPGDIIPVDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + ++GR N ++ITD++ + +K +H Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] Length = 348 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 52 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 108 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 109 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 168 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 169 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 226 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 227 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 286 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 287 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 346 Query: 316 H 316 Sbjct: 347 A 347 >gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36] gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36] Length = 350 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 103/289 (35%), Gaps = 22/289 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + + Sbjct: 58 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + ++ + ++ Sbjct: 118 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKIVFEDYHEAWAPVMDAE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDGGGGDFHITMPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T++ + T+ ++ L++G +IP E Sbjct: 229 LDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQKSLKNFLHK 317 + + Y +LGR N ++I+ ++ N + + + + + Sbjct: 289 E--LTVFIEDLPSYKAKLGRNKDNVAVKISRKLKVSNLTKSDIDHVVLR 335 >gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] Length = 347 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + + Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L+ L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLIFILVENFFGGDGRFHAKIEGREFTPTERRIIQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VNI ++ TL+D++ L++G +IP Sbjct: 228 LDAGVQSDKMDTDVRWSRALREEIMDIPVNIRAKLLDVDLTLRDLMELQVGDIIPVDMP- 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 287 -DTATVFVEDLPTYRAKMGRSGDNVALKISEKLKRPD 322 >gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14] Length = 349 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN+ ++ +L+D++ L++G VIP E Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 288 --QATIFVEDLPTYHAKMGRSGDNVALKISEKLQRPD 322 >gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR] gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR] Length = 356 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 100/283 (35%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 60 ERFARHMRVSLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + + + + + Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWAPVMDV--- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 177 -----GFEYLDSEVNPAMANIVSPTEVIVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR--INLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D+ A + ++V ++ + + +L++V+ L+ G VIP + Sbjct: 231 LDAGVQSDKEDTDMRWSKALRDEIMDVPVEMIAKLAQTEMSLREVMDLREGDVIPLELPD 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+++I + + Sbjct: 291 D--LTVLIEDLPTFHAKMGRSRDNVALKISEKIKRPETVKSDI 331 >gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 349 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN+ ++ +L+D++ L++G VIP E Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 288 --QATIFVEDLPTYHAKMGRSGDNVALKISEKLQRPD 322 >gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila] Length = 356 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 98/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETDLTLRELMELRPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++GR +N ++ITD++ + +K +H Sbjct: 288 NLLVYV--EDLPTFHAKMGRTKENVALKITDKL-KRPEGVKTEMH 329 >gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] Length = 352 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + +L+ ++ +K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++ITD+I Sbjct: 289 H--ITVMIEELPTFRAKLGRSRDNLALKITDKIPRP 322 >gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] Length = 352 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + +L+ ++ +K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++ITD+I Sbjct: 289 H--ITVMIEELPTFRAKLGRSRDNLALKITDKIPRP 322 >gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 349 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN+ ++ +L+D++ L++G VIP E Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 288 --QATIFIEDLPTYHAKMGRSGDNVALKISEKLKRPD 322 >gi|239997091|ref|ZP_04717615.1| flagellar motor switch protein FliM [Alteromonas macleodii ATCC 27126] Length = 352 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + L+DV+ K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVPLRDVMEFKPGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++I ++I Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322 >gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330] gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445] gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686] gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94] gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1] gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1] gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis M292/94/1] gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330] gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 316 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|332140589|ref|YP_004426327.1| flagellar motor switch protein FliM [Alteromonas macleodii str. 'Deep ecotype'] gi|327550611|gb|AEA97329.1| flagellar motor switch protein FliM [Alteromonas macleodii str. 'Deep ecotype'] Length = 352 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + L+DV+ K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVPLRDVMEFKPGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++I ++I Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322 >gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1] gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94] gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 316 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis M163/99/10] gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 316 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDTSSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1] gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1] Length = 316 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 113/292 (38%), Gaps = 6/292 (2%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 GD K++ + + L K+ D S +S + F + + + Sbjct: 29 GDLKSLAHVFKDASSHFCARL----KQGSAAAFDAETGSVESTDKTAFNDIFDKAAIITP 84 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 W + ++ LV +++E + GA P +R VE+K+A ++ Sbjct: 85 LKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANLLAGHLADA 144 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L++ +T S P ID + + L + T + +T L++P+ T Sbjct: 145 LDRVFNT-GSSQPLFAPGDCIDTADFDRDNLELSRLFTCRIAVTAAGKTGQMHLLLPRST 203 Query: 206 LLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +Q++ ++ + + ++ + +L + L+IGQV Sbjct: 204 HKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDALSRLEIGQV 263 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 264 LKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELVA 315 >gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513] gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 316 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMLLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9] gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium profundum SS9] Length = 348 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +D + + VN+ ++ +L+D++ L+ G +IP E Sbjct: 228 LDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIPIDVPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 Y ++G+ G N ++IT ++ Sbjct: 288 SATV--FVEDLPTYRAKMGKSGDNIALKITQKLKRPD 322 >gi|71278806|ref|YP_268251.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H] gi|71144546|gb|AAZ25019.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H] Length = 354 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 60 ERFARHMRISLFNMMRRTAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTALITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + + + S + S Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWSPVMDVS-- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 178 ------FEYLDSEVNPSMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230 Query: 214 LSSQNKSENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D+ + + V I+T+ +L V+ L+ G +IP + Sbjct: 231 LDAGVQSDKEDTDMRWSKALRDEIMDVPVTINTKFIEVDISLSQVMELQAGDIIPIEMPD 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + +LGR N ++I +I + + Sbjct: 291 NITVL--IEDLPTFRAKLGRSRDNIALKIESKIRRPESAKSEL 331 >gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33] gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 316 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ + + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQGVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 348 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +D + + VN+ ++ +L+D++ L+ G +IP E Sbjct: 228 LDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIPIDVPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 Y ++G+ G N ++IT ++ Sbjct: 288 SATV--FVEDLPTYRAKMGKSGDNIALKITQKLKRPD 322 >gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida LFI1238] gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein FliM) [Aliivibrio salmonicida LFI1238] Length = 343 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 97/277 (35%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S KF ++ + + Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVSMVKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKVVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F ++ P +++ Sbjct: 176 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVFPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ ++N + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESEISLRDLMDLQAGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++G+ G ++IT++I Sbjct: 289 --AATVFVEDLPTYRGKVGKSGDKLAVQITEKIKRPD 323 >gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] Length = 353 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 102/304 (33%), Gaps = 25/304 (8%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R+ G T+E I+ + L + ++ ++S Q KF ++ Sbjct: 44 DRIVR--GRMPTLELINERFARHMRISLFNMIRK----TAEVSINGVQMVKFGEYQNTLF 97 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + I LV L+EN G ++ R + E+++ + Sbjct: 98 VPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRVIQML 157 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIEN 192 + I + +YL N E + + ++ ++ Sbjct: 158 LKLIFEDYKDAWAPVMRVE--------FEYLDSEVNPAMANIVSPTEVIVVSSFHIELDG 209 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKK 250 F +++P +++ L + +S+ D + + V++ ++ Sbjct: 210 GGGDFHVVMPYS-MVEPIRELLDAGIQSDKMDTDKRWSKALQDEVMDVEVSLTAKLLETT 268 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +L+D++ ++ G VIP + + +LG+ N I+ITD++ + Sbjct: 269 LSLRDLMEMEAGDVIPVKMP--DACTVYIEDLPTFRGKLGQSNDNLAIKITDKLKRPEVM 326 Query: 311 LKNF 314 + Sbjct: 327 KSDV 330 >gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] Length = 317 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 109/300 (36%), Gaps = 6/300 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F K D+ +S + Sbjct: 22 LLRAAGLSGDD--LKSLAHVFKDASTHFC-DRLKHGCAAAFDVEAGQVESTDDAAFADIL 78 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W S ++ LV +++E + GA +R +E+K++ Sbjct: 79 DKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGMLEQKISAL 138 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 +++ L+Q + ++ + D + S F I+ +T Sbjct: 139 LAGHLASSLDQVFAANGQALFTAGECTDTAEFDRENFERSRLFACRID--VTAAGKTGQV 196 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 L++P+ T + + NQ ++ + + ++ I TL + Sbjct: 197 HLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIELEAFIQQGSMTLDAL 256 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 257 SMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELVA 316 >gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] Length = 348 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D +S + F Sbjct: 52 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPVESTDKTAFNDIF 108 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 109 DKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQKIANL 168 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T D D + LS F T + +T Sbjct: 169 LAGHLADALDRVFNTGSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 226 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 227 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 286 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 287 LSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELV 346 Query: 316 H 316 Sbjct: 347 A 347 >gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. 16M] gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. Rev.1] gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str. Ether] gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str. 16M] gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 316 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P + VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] Length = 344 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S KF ++ + + Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVSMVKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + I + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKVIFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F ++ P +++ Sbjct: 176 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVFPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ ++N + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESQISLRDLMELEAGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++G+ I+IT++I Sbjct: 289 --AATVFVEDLPTYRGKVGQSNDKLAIQITEKIKRPD 323 >gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] Length = 331 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 96/271 (35%), Gaps = 16/271 (5%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F+ + +I + Q KFS I + + I Sbjct: 69 ERFARFIRISLFNFLRRSAEIFISGIQVQKFSEYIQGLLVPTNLTIVRFNPLRGKALIVI 128 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G + + Q R + E ++ + I I L + E Sbjct: 129 DPRLVFTVVDNFFGGAGQFYNQTEGREFTPTEMRVVRIIIDMIFKDLKEAWKPVMEL--- 185 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E + +++ +E + +P L + Sbjct: 186 -----DFEYVGAEINPRFANIIGPGEIIVISTIHVELEGGGGDVNIAMPYAMLEPIRELL 240 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + S + + V+I++ + K T++DV+ LK G VIP Sbjct: 241 DAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIPIDMP--D 298 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 IL A G ++ ++G NY I+I D++ Sbjct: 299 TVILKAEGIPVFEGKVGISDGNYAIQIIDKV 329 >gi|332994114|gb|AEF04169.1| flagellar motor switch protein FliM [Alteromonas sp. SN2] Length = 352 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 93/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + +L+ V+ K G++IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVSLRQVMEFKPGEIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++I ++I Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322 >gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4] gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4] Length = 348 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 103/309 (33%), Gaps = 25/309 (8%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 +NT+ R+ G T+E I+ + L + ++ ++S Q Sbjct: 32 ENTTNFDFSSQDRIVR--GRMPTLELINERFARHMRISLFNMLRK----TAEVSINGVQM 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF ++ + I LV L+EN G ++ R Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFV 181 + E+++ + + + + S +YL N E + Sbjct: 146 TPTERRIIQLLLKIVFEDYKEAWSPVMGVE--------FEYLDSEVNPSMANIVSPTEVI 197 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLN 239 + ++ ++ F +++P +++ L + +S+ D + Sbjct: 198 VVSSFHIEVDGGGGDFHVVMPYS-MVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCP 256 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 VN + K +L+D++ L+ G VIP E A + Y ++GR ++ Sbjct: 257 VNFRVNLLEKDISLRDLMELQPGDVIPIDMPEN--ATMFIEDLPTYRVKMGRSEDKLAVQ 314 Query: 300 ITDRINFDQ 308 +++ I Sbjct: 315 VSEEIERPH 323 >gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28] gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90] Length = 316 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 113/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKMAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P + VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13] gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 316 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T D D + LS F T + +T Sbjct: 137 LAGHLADALDRVFNTGSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] Length = 349 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVDLLEQDISLRDLMELQPGDIIPVTMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ + ++GR G+N ++++++I Sbjct: 289 H--AVMFVEELPTFRVKMGRSGENLAVQVSEKIKRPD 323 >gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] Length = 349 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIPITMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+N ++++++I Sbjct: 289 H--ATMFVEELPTFRVKMGRSGENLAVQVSEKIKRPD 323 >gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 336 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 9/272 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + KFS +H+ + + Sbjct: 60 ERFARLLRTGLFNMLRKTAEVSVVGVELLKFSEYVHTLYLPTSLNLVKVPPLRGTGLCVL 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ ++ + Q A L + + Sbjct: 120 DPKLVFILVDNFFGGDGRYFSKIEGREFTPTETRVIRKVLEQGFADLREAWNPVLPVDF- 178 Query: 160 LEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 +F +++ + N +E V ++ + + +P T+++ LS+ Sbjct: 179 --EFLNMEVNPQFANIVSPSEAVVVSRFHVELNGGGGDLHITLPY-TMIEPVRDVLSAGV 235 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ D + + V + R+ + +L +++ L+ G +IP E + Sbjct: 236 QSDRNDVDQRWVRSLREEMKSAPVRLSCRLTEARVSLHELMRLQPGDIIPIEMPE--TVV 293 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L A + LG G N ++IT+ I Q Sbjct: 294 LRAAEVPVLRGRLGCSGGNVAVKITEPIRAPQ 325 >gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] Length = 349 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEDLPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] Length = 347 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFSRHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++I+++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIQRPH 323 >gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 348 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFVEDLPTYRVKMGRSEDKLAVQISEEIERPH 323 >gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] Length = 348 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFVEDLPTYRVKMGRSEDKLAVQISEEIERPH 323 >gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] Length = 332 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 104/277 (37%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + I Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L++ + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFVDLHEAWKAVK----- 170 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 171 ---LIDFEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYS-MVEPIREI 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V+++ + + TL+++V LK+G +IP E Sbjct: 227 LDAGLQSDTDERDDRWVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I +ANG ++ ++G+ N +RI D ++ + Sbjct: 287 --VHIATANGVPMFQAKIGQCNNNLALRILDYVDRTR 321 >gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5] Length = 188 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 97/187 (51%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E LA +I+ VL ++ P+L + D + +EF INM++T Sbjct: 2 IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ Sbjct: 62 LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181 Query: 310 SLKNFLH 316 +++ ++ Sbjct: 182 LIRHLMN 188 >gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32] gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32] Length = 347 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSSALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++I+++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIERPH 323 >gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 347 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++I+++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIQRPH 323 >gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] Length = 281 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 99/269 (36%), Gaps = 19/269 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + ++S Q KF ++ + + LV L+EN G Sbjct: 2 LRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFG 61 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ + + + A + S +YL Sbjct: 62 GDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE--------FEYLDSEV 113 Query: 174 NR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 N E + + ++ ++ F +++P +++ L + +S+ D+ Sbjct: 114 NPSMANIVSPTEVIVVCSFHIEVDGGGGDFHMVMPYS-MVEPIRELLDAGVQSDKMETDV 172 Query: 228 IDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 A + ++V I+ R+N + L+D++ L++G +IP E AI+ Y Sbjct: 173 RWSSALRDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMPEH--AIMFVEELPTY 230 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++GR G ++I+ +I + + Sbjct: 231 RVKMGRSGDKLAVQISQKIKRPEAMKTDL 259 >gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1] gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1] Length = 349 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLMKTVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEKDVSLRDLMELQAGDIIPIDMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+ ++I+++I Sbjct: 289 N--ATMFVEELPTFRVKMGRTGEKVAVQISEKIRRPD 323 >gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 348 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKMAVQISEEIERPH 323 >gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 107/302 (35%), Gaps = 10/302 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 R G GD ++ ++ F K DI +S + + Sbjct: 24 RAAGLSGDD--LKSLAHVFKDASTHFC-DRLKHGCAAAFDIDAGQVESTDEAAFADILDK 80 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE----TIPQLYNRSLSTVEKKLA 135 + + W ++ LV +++E + GA +R +E+K++ Sbjct: 81 AAIIAPLKAERWGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKIS 140 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 ++ L+Q + ++ + D + S F I+ +T Sbjct: 141 ALLAGHLAKSLDQVFAGNGQTLFAAGECIDTAEFDRENFERSRLFACRID--VTAAGKTG 198 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLK 254 L++P+ T + + NQ++ + + + ++ I TL Sbjct: 199 RVHLLLPRSTHKPMQDAVAAFLRRPMNQADPSWAKKMRHEVSRARIELEAFIQQGSMTLD 258 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + Sbjct: 259 ALSMLEIGQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDEL 318 Query: 315 LH 316 + Sbjct: 319 VA 320 >gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116] gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116] Length = 348 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKMAVQISEEIERPH 323 >gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586] gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586] Length = 349 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P + + Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] Length = 349 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELRPGDIIPISMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G ++++++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGDKLAVQVSEKIKRPD 323 >gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] Length = 300 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 9 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 69 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 126 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 127 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 179 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 180 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 239 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 240 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 274 >gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218] Length = 352 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + + Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFGDYKDAWAPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHIVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + L+D++ L++G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDLALRDLMELQVGDIIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++++++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQVSEKIRRPD 323 >gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4] Length = 349 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] Length = 349 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFIEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] Length = 349 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P + + Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603] Length = 349 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P + + Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] Length = 347 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 92/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G VIP + Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELRPGDVIPIEMPK 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++G+ + ++I++ I Sbjct: 289 H--AVMFVEELPTYRVKMGQSNEKLAVQISEEIERPH 323 >gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus] gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329] Length = 348 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 89/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++++ I Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKLAVQVSQEIERPH 323 >gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] Length = 351 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 60 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 120 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 178 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 230 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 231 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIPITMPE 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+ ++++++I Sbjct: 291 N--ATMFVEELPTFRVKMGRSGEQLAVQVSEKIKRPD 325 >gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341] gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341] Length = 349 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] Length = 349 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN ++ + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVQLLEQDISLRDLMELQPGDIIPINMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+ ++++++I Sbjct: 289 H--ATMFVEELPTFRTKMGRSGELLAVQVSEKIKRPD 323 >gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] Length = 326 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + +IS + KFS +H+ + + Sbjct: 61 ERFARQMRISLFNLLRRSAEISVGGIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVV 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + T+ Q L + + + Sbjct: 121 DPKLVFILVDNFFGGDGRYHAKIEGREFTPTELRVIRMTLDQAFTDLKKAWAPVMDL--- 177 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E V + ++ ++ + +P +++ Sbjct: 178 -----DFEYINSEVNPQFANIVSPTEVVCVSSFHIELDGGGGDLHVTMPYS-MIEPMREL 231 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D I + V + + + +L+DV+ LK G +IP E Sbjct: 232 LDAGIQSDRSDVDERWIRALRDEVKAAEVELSSMLTETTLSLEDVMRLKPGDIIPIDLPE 291 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +L A G + + G I++T+RI Sbjct: 292 --QVLLRAEGIPVLRGKFGVSDGYNAIKVTERIRRAD 326 >gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1] gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ + ++V I + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 I+ ANG + ++G N +++ + I Sbjct: 289 D--MIMRANGVPAFKVKMGSHKGNLALQVIEPIERR 322 >gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619] gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619] Length = 322 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFIDLKEAWQAIMPVNFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + ++V + + ++ L+DV+ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPSFKARLGSHKGNLALQIIDPIERR 322 >gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] Length = 339 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + I Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGVQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + S Sbjct: 117 DARLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLNQAFVDLGEAWKAVFPVSF- 174 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E + +E V ++ ++ + +P +++ L + + Sbjct: 175 -EYVHSEVNPSLANIVSPSEVVVVSTFHIELDGGGGEMHITVPYS-MIEPIREVLDAGLQ 232 Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S++ Q E + V+++ + + TL+D+V LK G +IP ++ Sbjct: 233 SDSEEQDERWVRALREDVLAAKVDLECDVVRRDITLRDIVDLKEGDIIPVEFP--DYHVV 290 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +ANG ++ +LG+ N ++I + I+ Sbjct: 291 TANGVPMFRTQLGQHNDNLALKILEFIDRS 320 >gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] Length = 334 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 23/289 (7%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + L++ L + + ++S + KF+ +HS + Sbjct: 47 GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV +++N G ++ R + E ++ + Q A Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V +++ ++ + Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +L+ L + +S+ D + V + + + K+ TL+D+ Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLT 273 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK+G V+P L +++ E G ++IT Sbjct: 274 RLKVGDVLPIELNP--QVPLCVENIPVFTGEFGIANGMNAVKITATHPP 320 >gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2] gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2] Length = 253 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 98/244 (40%), Gaps = 4/244 (1%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 F + + + W + ++ LV +++E + GA P +R VE+K+ Sbjct: 11 DIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKI 70 Query: 135 AKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 A ++ L++ +T D D ++ LS F T ++ +T Sbjct: 71 ANLLAGHLAGALDRVFNTGSSQPLFAPGDCIDTADFDRDNFELSRLF--TCHIAVTAAGK 128 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTT 252 L++P+ T + + +Q++ ++ + + ++ + + Sbjct: 129 TGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMS 188 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + Sbjct: 189 LDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLID 248 Query: 313 NFLH 316 + Sbjct: 249 ELVA 252 >gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] Length = 340 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + + D++ Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLLRRNADVASGGVQILKFGEYIHTLYVPTSLNLVKIRPLRGTGLFIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQMVLEQVFHDMKEAWNAVMKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 173 -----DFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDMHVAMPYS-MIEPIREV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E I + + V ++ + +K +L+ + LK G VIP E Sbjct: 227 LDAGVQSDVDDVDERWISALQQDILEARVPLNAAVVRQKISLRSLSRLKPGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ANG I+ ++G+ N ++I D+I Sbjct: 287 --TITVTANGVPIFIAKVGQCNGNLALKIVDKI 317 >gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida] gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1] Length = 322 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + S Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + + V + + ++ L+D++ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322 >gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] Length = 322 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + S Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + + V + + ++ L+D++ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322 >gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] Length = 322 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVTFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + + V + + ++ L+D++ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322 >gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 337 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ TL+ + LK+G V+P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMTLRQLTGLKVGDVLPIELPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGISNGNNAVKIT 317 >gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] Length = 384 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 109/269 (40%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + QS +F ++S + S W + + Sbjct: 116 RLVRMMSTSLRNFTSDNVEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTID 175 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++++ ++++ LLG T ++ R +T+E+ L +R + + A L+ + Sbjct: 176 SSMIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVTFR 235 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ ++IP TL ++ L+ + Sbjct: 236 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMG 293 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V +D ++ L ++++++G I F + L Sbjct: 294 EKFG-RDSIWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQL 352 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ ++GR G+N IR+ + N Sbjct: 353 RCGDVPMFDGKMGRKGQNIAIRVDSKHNR 381 >gi|312884904|ref|ZP_07744594.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC BAA-2122] gi|309367381|gb|EFP94943.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC BAA-2122] Length = 348 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 57 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTGLVTM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + I + S Sbjct: 117 EARLVFILVENFFGGEGRYHSRIEGREFTPTERRIVQLLLKIIFEDYKEAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F ++ P +++ Sbjct: 175 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHVVFPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A K ++V I+ R+N L+D++ L+ G +IP Sbjct: 228 LDAGVQSDKMEADVRWSSALKEEIMDVPINFRVNLLEHDIALRDLMELQPGDIIPVEMPP 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 A++ Y ++GR I+I++ I + Sbjct: 288 H--AVMFVEELPTYRVKMGRSSDKLAIQISEEIKRPDAVKTDI 328 >gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 337 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ TL+ + LK+G V+P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMTLRQLTGLKVGDVLPIELPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] Length = 334 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 23/289 (7%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + L++ L + + ++S + KF+ +HS + Sbjct: 47 GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV +++N G ++ R + E ++ + Q A Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V +++ ++ + Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +L+ L + +S+ D + V + + + K+ TL+D+ Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLT 273 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK+G ++P L +++ E G ++IT Sbjct: 274 QLKVGDILPIELSP--QVPLCVENIPVFTGEFGIANGMNAVKITATHPP 320 >gi|330808225|ref|YP_004352687.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376333|gb|AEA67683.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 322 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I+ + ++V I + ++ L+D++ ++ G +IP E Sbjct: 229 LDAGFQSDLDDQDERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + ++G N +++ + I Sbjct: 289 D--MVMRANGVPAFKVKMGSHKGNLALQVIEPIERR 322 >gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] Length = 322 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIM----- 172 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 173 ---PVNFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWSKALREDVLDVAVPLSATVARRQLRLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 I+ ANG + +LG N +++ + I Sbjct: 289 D--MIMRANGVPSFKVKLGSHKGNLALQVIEPIERR 322 >gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 108/267 (40%), Gaps = 6/267 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + + Sbjct: 117 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNYGLLTVD 176 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 177 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 236 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ L++P TL ++ L+ + Sbjct: 237 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 294 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ + L+DV+ K+G I + + L Sbjct: 295 EKFG-RDSIWETHLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKILLNAQPNSPIDL 353 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 ++ +GR G + IR+ D+I Sbjct: 354 RCGDVSMFRGRMGRKGPHIAIRVDDKI 380 >gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] Length = 334 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 23/289 (7%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + L++ L + + ++S + KF+ +HS + Sbjct: 47 GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV +++N G ++ R + E ++ + Q A Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V +++ ++ + Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +L+ L + +S+ D + V + + + K+ TL+D+ Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLASKRMTLRDLT 273 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK+G ++P + + +++ E G ++IT Sbjct: 274 QLKVGDILPIELSPQVPVCV--ENIPVFTGEFGIANGMNAVKITATHPP 320 >gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] Length = 322 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 92/276 (33%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIM----- 172 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 173 ---PVNFEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWVKALREDVLDVAVPMSATVARRQLKLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + LG ++I D I Sbjct: 289 H--LVLRANGVPAFKARLGSHKGTLALQIIDPIERR 322 >gi|254491591|ref|ZP_05104770.1| flagellar motor switch protein FliM [Methylophaga thiooxidans DMS010] gi|224463069|gb|EEF79339.1| flagellar motor switch protein FliM [Methylophaga thiooxydans DMS010] Length = 340 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 11/286 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E I+ G + L + + +IS + Q KFS +H+ + Sbjct: 51 GRMPTLEMINERFGRYLRISLFDMLR----RSAEISVSGIQVMKFSEYMHTLFVPTSLNL 106 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I LV T+L+N G ++ R + E ++ + + Sbjct: 107 IHLHPLRGTGLIVLEPKLVFTILDNYFGGEGRFQARIEGREFTATELRVIRMVLNLCFTD 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + S E + +E V ++ ++ L P Sbjct: 167 LTEAWSPVMEVDFEFVSHEV--NPQFANIVSPSEVVVISTFHVELDGGGGDIHLTFPYS- 223 Query: 206 LLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +L+ L + +S+ ++D + +V I ++ TL + LK G Sbjct: 224 MLEPIRELLDTGLQSDRTADDGRWSKAMREELMVADVEIWAKLAETSLTLAQIHKLKTGD 283 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +IP + + ++ G + ++I + I + Sbjct: 284 IIPIQMPKN--VVAMVEDVPMFRASYGEHNEKAALKIAEVIEHPKD 327 >gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] Length = 331 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 94/273 (34%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF IH+ + + Sbjct: 57 ERFARYTRISMFNFLRRSADVASGGIQIMKFGEYIHTLYVPTSLNMVKVRPLRGTALFIF 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + ++Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLSQVFTDMKEAWHAVLDL--- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y N +E V + ++ ++ + +P +++ Sbjct: 173 -----DFEYYGSEVNPAMANIVSPSEVVVISSFHIELDGGGGDLHVALPYS-MIEPIREF 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + V + + ++ +L++V + G VIP E Sbjct: 227 LDAGVQSDVDEVDDRWVQSLQEDIQSAKVPVHGTVVDREISLREVAAFQPGDVIPVDMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 IL ANG I+ +LG N ++I + I Sbjct: 287 D--FILQANGTPIFRGQLGVRDDNLAVKIKEPI 317 >gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92] gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92] Length = 325 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 102/271 (37%), Gaps = 8/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q K+ IH+ + ++ Sbjct: 61 ERFARYTRISLFNLLRRAADVTVGGVQVMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIM 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E +L + + Q L + + +E S + Sbjct: 121 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTETRLIHKALEQFFLDLEEAWNPVKELSFD 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++++ N E V + +E + F + +P +L+ L S + Sbjct: 180 -HLGHEMNPAMANV-INPTEVVVVSTFQVDLEGGSGEFHVAMPYS-MLEPIRDLLVSGFQ 236 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + E R + ++ + ++ TL+DVV L+ G +IP E L Sbjct: 237 SGEDEKDERWQVALQRDILMAGLPLEMTLAQQEMTLRDVVDLQAGDIIPIELPE--TFEL 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 AN +Y+C +G N +++ ++I + Sbjct: 295 KANKVPVYNCTMGVSRGNLAVKVVNQIERPK 325 >gi|307945662|ref|ZP_07660998.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4] gi|307771535|gb|EFO30760.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4] Length = 410 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 98/271 (36%), Gaps = 6/271 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + W I Sbjct: 125 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGMITVE 184 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E L ++ ++ I Q + Sbjct: 185 SSLIYSIIDVLLGGGRGATAVRVEGRPYTTIETNLVQQMVSLILQDAEQAFAPLSPVHFT 244 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 +E + +R +N + + + +E+ + +++P TL ++ L+ + Sbjct: 245 MERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMG 302 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V +D + L V+ L +GQ + F L Sbjct: 303 EKFG-RDPIWEGHLATEVHAAEVEVDAVLYETHLPLGRVMNLDVGQTLVFDIEPTDPVTL 361 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + +G+ I++T + + Sbjct: 362 KCGNVPLTEGTMGKAEDAIAIQVTKNLRKPK 392 >gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] Length = 322 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQGMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + ++V + + ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDVIPVELPQ 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + I+ ANG + +LG N +++ + IN Sbjct: 289 E--MIMRANGVPSFKVKLGSHKGNLALQVIEPINRR 322 >gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] Length = 333 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + I Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFIDLKEAWKAVK----- 170 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 171 ---AIDFEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYS-MVEPIREV 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V+++ + ++ TL+D+V L+ G +IP E Sbjct: 227 LDAGLQSDTDERDDRWVRALQEDVMEARVDLEADLVRREVTLRDIVDLREGDIIPITMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 IL+ANG ++ +LG++ N +RI ++ Sbjct: 287 YN--ILTANGVPMFKTQLGQLNDNLAMRILGFVDRSN 321 >gi|288958672|ref|YP_003449013.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288910980|dbj|BAI72469.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 357 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 6/271 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S + S W + + Sbjct: 86 RLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVD 145 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 146 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 205 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + R +N + + + +E+ L+IP TL ++ L+ + Sbjct: 206 FDRLET-NPRFATIARPAN-AAVLVKLRIDMEDRGGRLELMIPYATLEPVRELLLQMFMG 263 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + +V++ ++ TL DV+ ++G I L Sbjct: 264 EKFG-RDSIWETHLASELMVTDVDLSAVLDEVTMTLHDVLNWRVGTRILLNATPDGAIEL 322 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ +GR G + +R+ + + Sbjct: 323 RCGDVSMFQGRMGRKGGHIAVRLEKELPKQE 353 >gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum SL003B-26A1] Length = 411 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 105/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + W + Sbjct: 127 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVE 186 Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LL G T ++ R +T+E L +R + I A Q + N Sbjct: 187 SSLIYSIIDVLLGGGRGTTAVRVEGRPYTTIETNLVRRMVEIILADAEQAFAPLSPVHFN 246 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + +E+ + +++P TL ++ L+ + Sbjct: 247 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMG 304 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + +D + L V++L +GQ + F + Sbjct: 305 EKFG-RDPIWEGHLASEIHAAEIEVDAVLYETHLPLGRVLSLDVGQTLIFDVDPHDPITI 363 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+V + IR+T + + +L F Sbjct: 364 KCGNVPLTEGTLGKVEDSIAIRVTRGLRRPKMTLAAF 400 >gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + +LG +++ + I Sbjct: 289 S--LVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv. citri str. 306] gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 337 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] Length = 329 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 104/283 (36%), Gaps = 21/283 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + S Sbjct: 57 ERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAWAPVLKLE-- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 ++Y+ N ++N E V ++ ++ + +P +++ Sbjct: 174 ------LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + + ++VN+ I KK TL DV+ K G VIP E Sbjct: 227 LDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKN 313 + AN + +LG Y++++ + I ++SLKN Sbjct: 287 --YVTVRANNVPTFRGKLGSSNGKYSVQMKESIKAQMKESLKN 327 >gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] Length = 337 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. maculicola str. ES4326] Length = 252 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 20/262 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + D++ Q KF +HS + A + LV L++N G Sbjct: 3 LRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFG 62 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + + Q L + E + +Y+ Sbjct: 63 GDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--------NFEYINSEV 113 Query: 174 NRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSE 225 N +E V ++ ++ + +P +++ L + +S ++Q E Sbjct: 114 NPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDE 172 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 ++ +NV + T I ++ L+D++ ++ G VIP + ++ ANG + Sbjct: 173 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSDS--LVMRANGVPSF 230 Query: 286 SCELGRVGKNYTIRITDRINFD 307 +LG +++ + I Sbjct: 231 KVKLGSHKGKMALQVIEPIARR 252 >gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7] Length = 322 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 95/262 (36%), Gaps = 20/262 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + D++ Q KF +HS + A + LV L++N G Sbjct: 73 LRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + + Q L + E + +Y+ Sbjct: 133 GDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--------NFEYINSEV 183 Query: 174 NRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSE 225 N +E V ++ ++ + +P +++ L + +S ++Q E Sbjct: 184 NPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDE 242 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 ++ +NV + T I ++ L+D++ ++ G VIP + +L ANG + Sbjct: 243 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELGDS--LVLRANGVPSF 300 Query: 286 SCELGRVGKNYTIRITDRINFD 307 +LG +++ + I Sbjct: 301 KVKLGSHKGKMALQVIEPIARR 322 >gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] Length = 337 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + E Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1] gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1] Length = 354 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HVKIEGREFTPTENRVVQLVLKQAFKDMEEAWKAVL----- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N +E V ++ ++ L +P +++ Sbjct: 173 ---PVKFEYLSSEVNPALANIVSPSEVVVVNTFHIELDGGGGDLQLTVPYS-MIEPLREV 228 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S +S+ NQ E + + NV++ ++ +K L ++ LK G V+ E Sbjct: 229 LDSGVQSDVGNQDERWMSSLREEIMGANVHLRCKLLDRKIKLSELAALKTGDVLQVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ AN Y +LG + Y ++I +++ + Sbjct: 289 H--VMIYANEVPTYRGKLGTSREKYAVKIAEKVQRPE 323 >gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato Max13] gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato K40] gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 97/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + +LG +++ + I Sbjct: 288 -DTLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N + +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPVMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + +LG +++ + I Sbjct: 288 -DTLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae FF5] gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aceris str. M302273PT] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + +LG +++ + I Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + E Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMEV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLNTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPMFTGEFGVSNGNNAVKIT 317 >gi|296531938|ref|ZP_06894735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] gi|296267736|gb|EFH13564.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] Length = 355 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 102/276 (36%), Gaps = 6/276 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F +++ + W + + Sbjct: 67 RLVRIMSTSLRNFTSDNVEVSIEGITSLRFGDYLNTIPLPAMLVVFKAEEWDNYGLVVVD 126 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + L+ E Sbjct: 127 SALIYSVVDVLLGGRRGTTAMRIEGRPYTTIERGLIERLTEVVLKDLSDAFGPLAEVEFR 186 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E +++ +R SN V + + +E+ L++P T L+ L Q Sbjct: 187 FERL-EVNPRFAAISRPSNAAVLA-RLRVDMESRGGQLQLLLPYAT-LEPVRELLLQQFM 243 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E D A + Q V +D ++ + L DVV L++G +I L Sbjct: 244 GEKFGRDSIWETHLAEELRQTEVALDVVLDEQTMRLSDVVRLQVGDLITLGVGPGAPVRL 303 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++ ++G +RI + + L++ Sbjct: 304 RCGDTSLFEGQVGGRKGRLAVRIDRAMPRQAEGLRD 339 >gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 409 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S + +F ++S + W + Sbjct: 125 RLVRLTTTSLRNFTSDNVEVSLDSMTNVRFGDYLNSIPLPAILGVFKAKEWDGFGLVTVE 184 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L +R I I Q S Sbjct: 185 SSLIYSIIDVLLGGGRGSSPTRVEGRPYTTIESNLVRRMIEIILLDAEQAFGPLSPVSFP 244 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + + +E+ +++P TL ++ L+ + Sbjct: 245 LERLET-NPRFAAISRPANAAIM-VELRIDMEDRGGKVEIVLPYATLEPIRDLLLQMFMG 302 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Y V +D + L+ V+ L++GQ + F + + Sbjct: 303 EKFG-RDPIWEEHLATEVYSSEVQVDAVLYENTIPLQRVLNLEVGQTLLFDTGPRDPVQV 361 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 G ++ +G V +I I+ ++ + +L F Sbjct: 362 KCGGVQLTEGLMGHVDDRISIEISKKLKQPKMTLAAF 398 >gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum centenum] gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 352 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 104/311 (33%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL L F+ V+++ S Sbjct: 66 DRLPMLDVVFDRLVR---------------------LLNTSFRNLTSGTVEVTVQQIASV 104 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + + + W ++ + + L+ ++++ LLG + R + Sbjct: 105 RFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRSDPAPIDGRPYT 164 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E+ LA+R I + L S E SN + + Sbjct: 165 VIERALAERLIRTVLKDLGTAFSPLSAVGFACERVETTPQFA--VITRSNNACISARFQV 222 Query: 189 TIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++ L+IP TL ++ L+ + K + + + +V++ + Sbjct: 223 ALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFG-RDSMWETHLKNELRRTSVDLSAVL 281 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +L D++ K G + R A+L+ ++ E+G+ N IRI + Sbjct: 282 GQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRNGNVAIRIDADLGA 341 Query: 307 DQKSLKNFLHK 317 + + L + Sbjct: 342 QDEVIHGLLQR 352 >gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 2250] gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. B076] gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori str. 301020] gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 322 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I+ +NV + T I ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWINALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + +LG +++ + I Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|254504876|ref|ZP_05117027.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11] gi|222440947|gb|EEE47626.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11] Length = 412 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + + W I Sbjct: 128 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKVEEWDGFGLITVE 187 Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LL G T ++ R +T+E L ++ + I Q + N Sbjct: 188 SSLIYSIIDVLLGGGRGTTAARVEGRPYTTIETNLVQQMVQLILQDAEQAFAPLSPVHFN 247 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + +E+ + +++P TL ++ L+ + Sbjct: 248 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMG 305 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + +D + L V++L +GQ + F ++ Sbjct: 306 EKFG-RDPIWEGHLATEIHAAEIEVDAVLYETYLPLGRVLSLDVGQTLVFDVAPTDPVLV 364 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+ + IR+ + + +L F Sbjct: 365 KCGNIPLTEGTLGKTEDSIAIRVAKNLRKPKMTLAAF 401 >gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25] gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 322 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 97/273 (35%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + ++V + + ++ L+D++ ++ G +IP E Sbjct: 229 LDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + I+ ANG + +LG N +++ + I Sbjct: 289 E--MIMRANGVPSFKVKLGSHKGNLALQVVESI 319 >gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + +LG +++ + I Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzicola BLS256] Length = 337 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D++Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] Length = 374 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 102/267 (38%), Gaps = 6/267 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + Sbjct: 76 RLVRLMTVSLRNFTSDNVEVSLDNVSSIRFGDYLNSIPLPAILAVFRAKQWDNYGMFTVD 135 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E L +R I + + + Sbjct: 136 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIELNLVQRMIEVVLQDVQSAFEPLSPVTLE 195 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + +E+ L++P TL ++ L+ + Sbjct: 196 LDRMETNPRFAAIARPA--NAAILVKLRVDMEDRGGRIELLLPYATLEPIRELLLQMFMG 253 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ ++ +L++V+ ++GQ + + L Sbjct: 254 EKFG-RDTIWESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTLMLNSGPEGAIDL 312 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 G + ++GRVG + +R+ I Sbjct: 313 RCGGVRLGKGKMGRVGNHVAVRVEQAI 339 >gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] Length = 320 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 97/270 (35%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +H+ + L I Sbjct: 57 ERFSRYTRISLFNLLRRSADVAVGGIQVQKFGEYVHTLFVPTSLNMIKLRPLRGTGLIVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + + A L + Sbjct: 117 DAKLVFKLVDNYFGGDGR-HAKIEGREFTPTELRVVEMVLQEAFADLKEAWRAVLPVEFE 175 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + +E V ++ ++ + +P +++ +L S + Sbjct: 176 FVNAEV--NPSMANIVSPSEVVVVSTFHIELDGGGGDMHITLPYA-MIEPIRETLDSGLQ 232 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++ + I VN+ ++ K+ L+D++ LK G VIP ++ Sbjct: 233 TDVDDIDDRWIKSLREDILNATVNMGCKVAEKEVPLRDIIDLKEGDVIPMEMPGD--LVI 290 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 SANG + +LG+ N +++ ++IN + Sbjct: 291 SANGIPMMLAKLGQSKGNLALQVVEKINNE 320 >gi|285018173|ref|YP_003375884.1| flagellar motor switch protein [Xanthomonas albilineans GPE PC73] gi|283473391|emb|CBA15896.1| probable flagellar motor switch protein [Xanthomonas albilineans] Length = 335 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 90/275 (32%), Gaps = 19/275 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 58 ERFARLCRIGLFNLIRRSADLSVRGIDLVKFNDYMHSLYVPSNLNLIKFKPLRGTGLIVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L++ + Sbjct: 118 EPTLVFTVVDNFFGGDGRYPTRIEGREFTPTEMRVIQLMLKQTFADLHEAWAPVMNVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E+V ++ +E + +P +L+ Sbjct: 176 ------FEYLNSEVNPHFANIVTPREYVVVSRFHVELEGGGGEIHVTLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + Y V I + + K+ +L+++ L+IG ++P Sbjct: 229 LDAGIQSDRVDRDESWNIMLREQLYGSEVTISSVLAQKEMSLRELTRLRIGDILPIDLP- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L +++ E G ++IT Sbjct: 288 -KQVPLCVENIPVFTGEFGVSQGQNAVKITATHPP 321 >gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] Length = 337 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D++Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. B100] gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris] Length = 337 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LKIG ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|23015785|ref|ZP_00055552.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 395 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 104/265 (39%), Gaps = 6/265 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + + Sbjct: 128 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNFGLLTVD 187 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 188 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 247 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ L++P TL ++ L+ + Sbjct: 248 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 305 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ + L++V+ K G + + Sbjct: 306 EKFG-RDSIWETHLAEELWLTEVELEAVLDEQVMNLREVLNWKPGSKFMLNATADSQIDM 364 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 ++ +GR G++ I++ + Sbjct: 365 RCGEVAMFRGRMGRKGQHIAIQVDE 389 >gi|83312597|ref|YP_422861.1| flagellar motor switch protein FliM [Magnetospirillum magneticum AMB-1] gi|82947438|dbj|BAE52302.1| Flagellar motor switch protein fliM [Magnetospirillum magneticum AMB-1] Length = 393 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 104/265 (39%), Gaps = 6/265 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + + Sbjct: 126 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNFGLLTVD 185 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 186 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 245 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ L++P TL ++ L+ + Sbjct: 246 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 303 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ + L++V+ K G + + Sbjct: 304 EKFG-RDSIWETHLAEELWLTEVELEAVLDEQVMNLREVLNWKPGSKFMLNATADSQIDM 362 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 ++ +GR G++ I++ + Sbjct: 363 RCGEVAMFRGRMGRKGQHIAIQVDE 387 >gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] Length = 339 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 104/258 (40%), Gaps = 5/258 (1%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ S + + + ++ + + + + +G V ++E L GA Sbjct: 83 VAVESVAATRAAEAQNALDALAITATYGGAEPDARVTLGAERKFVFAMVEGLFGADGSEP 142 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 R+L++VE +LA+ + +++ L ++T ++ L+ R + Sbjct: 143 FYEEERALTSVEIRLARLVLDRLAKALQISFASTAGAALALDPVEPKPEPAGAARRSGSA 202 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQ 237 + +T S ++ PQ +L +L++ + QS D + Sbjct: 203 LIC--RFRLTAFGAESEALVTFPQG-VLDPLREALAADPATTIQSADPLWAQRMKDRITA 259 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + + TL DV ++GQ++ L G+ ++ CE+G+ YT Sbjct: 260 TEVSLTAVMERRDLTLGDVARFEVGQIVELPVSPTGLIALECEGQTLFWCEIGQKDGAYT 319 Query: 298 IRITDRINFDQKSLKNFL 315 IRI D ++ +Q+ + + L Sbjct: 320 IRIADFVDKEQEFIDDML 337 >gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] Length = 342 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +HS + + Sbjct: 78 ERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 137 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q A L + + Sbjct: 138 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDV--- 193 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ +++ + +P +++ Sbjct: 194 -----NFEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYS-MIEPIREM 247 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +Q E + +NV + + ++ L+D++ ++ G VIP E Sbjct: 248 LDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPE 307 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I+ ANG + +LG N +++ + + Sbjct: 308 D--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 338 >gi|319787093|ref|YP_004146568.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis 11-1] gi|317465605|gb|ADV27337.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis 11-1] Length = 339 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 25/309 (8%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ G T+E ++ L++ L + + DIS KF Sbjct: 38 PYDFASQDRIIR--GRMPTLEMVNERFARLWRIGLFNLIR----RSADISVRGIDMIKFG 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 +HS + + LV +++N G ++ R + E Sbjct: 92 EYMHSLYVPTNLNLVRFKPLRGMGLVVFEPKLVFAVVDNFFGGDGRYPTRIEGREFTVTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTIN 185 ++ + + Q A L + + + +Y+ N E+V Sbjct: 152 MRVIQLMLRQTFADLVEAWAPVMDVE--------FEYINSEINPHFANIVTPREYVVVSR 203 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243 ++ ++ + +P +L+ L + +S+ D + V + Sbjct: 204 FHVELDGGGGEIHVTLPYS-MLEPIRELLDAGIQSDRIDRDESWNTTLREQLQLAEVTVS 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + K+ L+ + LK+G ++P T + +++ + G ++IT Sbjct: 263 SVLAQKRIDLRQLTRLKVGDILPIDLS--TTVPVCVENIPVFTGQFGVSNGCNAVKITRT 320 Query: 304 INFDQKSLK 312 ++ + Sbjct: 321 HPPGSETAR 329 >gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] Length = 242 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 90/253 (35%), Gaps = 20/253 (7%) Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +HS + A + LV L++N G ++ Sbjct: 2 GGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKI 60 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------ 176 R + E ++ + + Q L + E + +Y+ N Sbjct: 61 EGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--------NFEYINSEVNPAMANIVG 112 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARK 234 +E ++ ++ + +P +++ L + +S ++Q E I+ Sbjct: 113 PSEAGVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDERWINALKED 171 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +NV + T I ++ L+D++ ++ G VIP E ++ ANG + +LG Sbjct: 172 VLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSES--LVMRANGVPSFKVKLGSHKG 229 Query: 295 NYTIRITDRINFD 307 +++ + I Sbjct: 230 KMALQVIEPIARR 242 >gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] Length = 323 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 99/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTGLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAWHAVMD---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ ++ + +P +++ Sbjct: 174 ----INFEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I ++V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I+ ANG + +LG N +++ + I + Sbjct: 289 N--VIMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323 >gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] Length = 395 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 91/272 (33%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + ++S + KF +H+ + + Sbjct: 58 ERFARLFRIGLFNMLRRTPEVSVVGVEMMKFGEYVHTLFVPTSLNLMRVHPLRGTGLFII 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++N G ++ R + E ++ + I Q L + + + Sbjct: 118 DPKLVFIVVDNFFGGDGRFFVKIEGREFTPTELRVIRMLIDQAFENLEEAWNPVMNAEF- 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E + + +E V ++ ++ + +P T+++ L + + Sbjct: 177 -EYMHSEVNPQFANIVSPSEVVVVSKFHVELDGGGGDIHVTLPY-TMIEPIRELLDAGVQ 234 Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ E + V + + + + +L+DV+ +K G +IP E + Sbjct: 235 SDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNMKPGDIIPVELPE--AVKV 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 A ++ G N I+IT+RI + Sbjct: 293 YAEDMPVFRGRYGVRHGNTAIKITERIQPRAE 324 >gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] Length = 341 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 106/269 (39%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + S W + + Sbjct: 75 RLVRMMSTSLRNFTSDNVEVSLDNITSIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVD 134 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 135 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVTVVLSDLSAAFDPLSPVTFR 194 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + R +N V + + +E+ L++P TL ++ L+ + Sbjct: 195 FDRLET-NPRFATIARPANAAVLA-RLRIDMEDRGGRLELMLPYATLEPVRELLLQMFMG 252 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + +V +D ++ L DV+ LK G I + + Sbjct: 253 EKFG-RDSIWETHLANELWNTDVELDAVLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDM 311 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 ++S ++GR + +RI++R+ Sbjct: 312 RCGNVSLFSGKMGRKNGSIAVRISNRLRK 340 >gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTGLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAWHAVMD---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ ++ + +P +++ Sbjct: 174 ----INFEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I ++V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ ANG + +LG N +++ + I + Sbjct: 289 N--VVMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323 >gi|288962686|ref|YP_003452980.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288914952|dbj|BAI76436.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 374 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 36/318 (11%), Positives = 114/318 (35%), Gaps = 26/318 (8%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + +++K+ P+ ++ R+ L ++ +V+ Sbjct: 80 VSSTTVNKDRLPMLDVVFDRMVR---------------------MLNTSLRQFASTNVEA 118 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + +++ + + + A W + + + L+ +++ LLG Sbjct: 119 SLSKIEWLRYTDFQDAIELPALIGVARAEPWDNQMLVTIDSALIYCMMDVLLGGRRSRPG 178 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R+ +++E+K+ +R + + L Q + + T + Sbjct: 179 RIDGRAYTSIERKMTERMMKVVLQDLGQSFDPLAQVDFVFDRLEVNPQFATITRATN--A 236 Query: 181 VTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + + + + +E ++IP TL ++ L+ + K + + + Sbjct: 237 IIRVRIAVEVERRTGHIDIVIPYATLEPIRGKLVQMFMGEKFGH-DTVWESHLKNELMRS 295 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + K L +V+ + GQ + + ++ + +++ +G+ N + Sbjct: 296 KLELVAVLAETKVPLGEVLAWQKGQSLKLRISPDSTVMVFSKTIPLFAGHMGQRNDNIAV 355 Query: 299 RITDRINFDQKSLKNFLH 316 +I ++ Q+ + L Sbjct: 356 KIDTDLDTKQELIDGLLS 373 >gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] Length = 412 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + W I Sbjct: 128 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLITVE 187 Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LL G + ++ R +T+E L ++ +A I + N Sbjct: 188 SSLIYSIIDVLLGGGRGTSAVRVEGRPYTTIETGLVQQMVALILQDAEHAFAPLSPVHFN 247 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + +E+ S +++P TL ++ L+ + Sbjct: 248 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMG 305 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V +D + L V++L +GQ + F ++ Sbjct: 306 EKFG-RDPIWEGHLATEIHAAEVEVDAVLYETYLPLGRVLSLDVGQTLVFDKEPTDPVMI 364 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+V + IR+ + + +L F Sbjct: 365 KCGNIPLTEGTLGKVDDSIAIRVAKNLRKPKMTLAAF 401 >gi|15596640|ref|NP_250134.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1] gi|107100877|ref|ZP_01364795.1| hypothetical protein PaerPA_01001907 [Pseudomonas aeruginosa PACS2] gi|116049388|ref|YP_791809.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa UCBPP-PA14] gi|218892684|ref|YP_002441553.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58] gi|254234542|ref|ZP_04927865.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719] gi|254239793|ref|ZP_04933115.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192] gi|296390190|ref|ZP_06879665.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAb1] gi|313106442|ref|ZP_07792673.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016] gi|12230925|sp|Q51465|FLIM_PSEAE RecName: Full=Flagellar motor switch protein FliM gi|9947394|gb|AAG04832.1|AE004574_3 flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1] gi|115584609|gb|ABJ10624.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa UCBPP-PA14] gi|126166473|gb|EAZ51984.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719] gi|126193171|gb|EAZ57234.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192] gi|218772912|emb|CAW28724.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58] gi|310879175|gb|EFQ37769.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLE---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 174 ----MNFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ ANG + +LG N ++I + + + Sbjct: 289 H--MVMRANGVPAFKVKLGAHKGNLALQILEAVERSR 323 >gi|152984239|ref|YP_001349238.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7] gi|150959397|gb|ABR81422.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLE---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 174 ----MNFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ ANG + +LG N ++I + + + Sbjct: 289 H--MVMRANGVPAFKVKLGAHKGNLALQIVEAVERSR 323 >gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] Length = 332 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 20/272 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + + D+S Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLLRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLNQVFHDMKEAWHAVLQVE-- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N ++N E V ++ ++ +P +++ Sbjct: 174 ------FEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E ++ ++NV I+T + ++ +L+D+ +K G VIP E Sbjct: 227 LDAGVQSDIDDVDERWVNALQEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVEIPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ANG IY LG +RI DR Sbjct: 287 H--LTVTANGIPIYKATLGTRDGKLALRIHDR 316 >gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium HP15] Length = 332 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 103/277 (37%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ M + D+S Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLMRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMKEAWHAVLKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N ++N E V ++ ++ +P +++ Sbjct: 173 -----DFEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E ++ +++V I+T + ++ +L+D+ +K G +IP E Sbjct: 227 LDAGVQSDIDDVDERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ANG IY LG +RI +R + + Sbjct: 287 H--LTVTANGIPIYKATLGTRDGKLALRIHERASVPK 321 >gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166] Length = 323 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q A L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDV--- 174 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ +++ + +P +++ Sbjct: 175 -----NFEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +Q E + +NV + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I+ ANG + +LG N +++ + + Sbjct: 289 D--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 319 >gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] Length = 334 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 98/270 (36%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + V+IS + K+S I + + + Sbjct: 59 ERFARLLRIGLYNFLRRGVEISVGPVRVSKYSEFIRNLVVPTNLNLVQFKPLRGTALMIF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +LV +++NL G ++ R + E ++ +R + + + Sbjct: 119 NPDLVFLMVDNLFGGDGRFHTRVEGRDFTQTEHRIIQRILNIVFEAYGKSWEPVYPIEFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V + + + ++ +P +++ L+S + Sbjct: 179 FIR-SEMNTQFANI-ATPNEVVVAVTFAIELGQISGEMHFCMPYS-MIEPIKDLLTSSLQ 235 Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +EN + I ++ V I + + +L+D+V LK+G VIP A + Sbjct: 236 AENLEVDKRWIRLMRQQIQLAEVEIVADLGTAEVSLRDIVNLKVGDVIPLDIPPTIEAKV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C G+ YT+R+ ++ Sbjct: 296 --DGVPVMECAYGKFNGQYTLRVEKLLSTS 323 >gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893] gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893] Length = 332 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 20/272 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + + D+S Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLLRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMREAWHAVLKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N ++N E V ++ ++ + +P +++ Sbjct: 173 -----DFEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHMALPYS-MIEPIRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E + +NV I+T + ++ +L+D+ LK G +IP E Sbjct: 227 LDAGVQSDIDDVDERWVSALQEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVEIPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L+ANG +Y +G +RI DR Sbjct: 287 --LLTLTANGIPVYKATMGTRDGKLALRIHDR 316 >gi|88800464|ref|ZP_01116028.1| flagellar motor switch protein FliM [Reinekea sp. MED297] gi|88776794|gb|EAR08005.1| flagellar motor switch protein FliM [Reinekea sp. MED297] Length = 360 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 102/286 (35%), Gaps = 20/286 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +H+ + + Sbjct: 57 ERFARYTRISMFNFLRRSADVATGGIQILKFGEYVHTLYVPTSLNLVKVRPLRGTALFIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + ++Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRVVQMILSQVFQDMKEAWGAVLDV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 173 -----DFEYMSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHMTLPYS-MIEPVRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + E ++ V + + ++ L+++V L+ G VIP E Sbjct: 227 LDAGVQSDVDEIDERWVESLRHDILGAKVPTNAVVAEREIKLRELVDLQAGDVIPIDLPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +ANG ++ +LG+ G N +R+ + + + + + Sbjct: 287 --TIKFTANGIPLFETKLGQCGDNLALRVERPVRKMSRDIGDMKTR 330 >gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum] gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 362 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 102/272 (37%), Gaps = 6/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S + + W + + Sbjct: 92 RLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLAVFKAEEWDNYGLMVID 151 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 152 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 211 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + R +N + + + +E+ L+IP TL ++ L+ + Sbjct: 212 FDRLET-NPRFATIARQAN-AAVLVKLRIDMEDRGGRLELLIPYATLEPVRELLLQMFMG 269 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + +V++ ++ +L DV+ +IG + L Sbjct: 270 EKFG-RDSIWETHLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLLNVAPDDTIEL 328 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ++ +GR G N +RI ++ Sbjct: 329 RCGDVPMFLGRMGRKGGNIAVRIDREAPKPEQ 360 >gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17] gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17] Length = 331 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 20/272 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S + Q KF +H+ + + Sbjct: 57 ERFARYTRISLFNLLRRTADVSTSGVQIMKFGEYVHTLYVPTSLNLCKIRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + T + Sbjct: 117 DAKLVFKLVDNFFGGQGR-HAKIEGREFTPTENRIVQMMLNQVFHDMQEAWQTVLKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +YL N ++N E V ++ ++ +P +++ Sbjct: 173 -----NFEYLSSEVNPSMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + ++V +++ I + +L++V K G +IP E Sbjct: 227 LDAGVQSDIDDTDERWVSALQEDIKTVSVAVNSTICRRHISLREVAKFKAGDIIPIEMAE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ANG IY+ LG +RI R Sbjct: 287 H--LTVTANGIPIYTATLGTRDDKLALRIHGR 316 >gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] Length = 324 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 98/271 (36%), Gaps = 20/271 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + S Sbjct: 58 ERFARYTRISLFNMLRRTADVSSGGLQVMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + + Sbjct: 118 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFKDLTEAWAPVLKLE-- 174 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 ++Y+ N ++N E V ++ ++ + +P +++ Sbjct: 175 ------LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 227 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + + ++V + + +K +L +V+ K G +IP E Sbjct: 228 LDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ANG + +LG + Y++++ + Sbjct: 288 --FVTVRANGVPTFKGKLGVSNERYSVQMQE 316 >gi|254418956|ref|ZP_05032680.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3] gi|196185133|gb|EDX80109.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3] Length = 346 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 71 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 130 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + + + N Sbjct: 131 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDARLAFEPLTPVTFN 190 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + I + + +E+ L++P TL ++ L+ Sbjct: 191 LDRLETNPRFAAIARPANAA--ILIKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 248 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + ++ + L V+ LK+G + + + Sbjct: 249 EKFG-RDNIWEGHLATELWTTETEVRAVLDEQMMPLSTVLNLKVGDTMMLNATPDSEVSI 307 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A + + +GR G++ +RI +N + Sbjct: 308 RAGAIPLTTGRMGRKGQHIAVRIEGPVNPE 337 >gi|170747253|ref|YP_001753513.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170653775|gb|ACB22830.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 404 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 98/274 (35%), Gaps = 6/274 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W ++ + Sbjct: 121 RMIRLLSTSLRNLFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFRAEQWENSGLVTVD 180 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL + LLG + +L R + +E L +R + + L S Sbjct: 181 SNLAYATFDLLLGGKRGGSSSRLDGRPFTAIEMTLVRRLVEIVLGDLEMSFQPLSPVSFG 240 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ T I++ + ++ ++ P T ++ L+ Sbjct: 241 IDRIETNPRFATIT--RPGNAAILISLRLDVDGRGGMLQILFPYAT-IEPIRELLTQSFM 297 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E D A + +Q +V +D ++ LK V++LK+G+ + F + + Sbjct: 298 GEKLGRDHVWEGHLATEIWQADVTMDAVLHEMMLPLKQVMSLKVGETLMFDAKPSDLITV 357 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GRV + +++T + + ++ Sbjct: 358 RCGDWALTQGRIGRVDGHIAVQVTRPLRRSRTTI 391 >gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] Length = 375 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 9/289 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + +L + + + V++ S +S + S + F+ Sbjct: 65 RAFQALHEGFSREFGAALSGMLRAIVEVKLISVDQLTYSEFVFSLENPTCFNLLESKGLE 124 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + S +++ +++ LLG E+IP + +R L+ +E +L R + L Sbjct: 125 GHLILDLSPSIIFPIVDRLLGGGKESIPSIPSRPLTEIELQLVSRITLLVINGLENAWHN 184 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + L + NE + ++ +T+ V L IP T ++ Sbjct: 185 VCSLGLKVTQIESNPQLVQIV--PPNEVIVLVSFEITMGEVRGIMNLCIPFNT-IEPLSG 241 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQ---LNVNIDTRINLKK--TTLKDVVTLKIGQVIPF 267 LSS S Q + L DP R + + +NL T +D+ L +G VI Sbjct: 242 KLSSDTWSAYQKKGL-DPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDVIMT 300 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 H ++ + G ++ + G V IR+T + + L+ L Sbjct: 301 EHPKEDGLEVVVEGCPMFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349 >gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB 48] gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB 48] Length = 387 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 101/272 (37%), Gaps = 6/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 110 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 169 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + I + N Sbjct: 170 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILHDAKMAFEPLTPVNFN 229 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 230 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRVELLLPYATLEPIRKMLLQQFMG 287 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ ++ L +V+ LK+G+ I + L Sbjct: 288 EKFG-RDNIWESHLATELWTTQMEVRAVLDEQQMPLSEVLNLKVGETIVLNATADSPIEL 346 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++GR G N +R+ + K Sbjct: 347 RCGTIPLTNGKMGRKGHNIAVRVDHPLAASTK 378 >gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] Length = 340 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S KF +H+ + + Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGINIQKFGEYVHTLYVPTSLNMVKFRPLRGTALVVF 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDMKEAWRAVL----- 170 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +++ N ++N E V + ++ ++ + IP +++ Sbjct: 171 ---PIDFEHVNSEVNPSMANIVSPSEVVVVSSFHVELDGGGGEMHITIPYS-MIEPIREM 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S++ D ++ Q NV +DT K LKD+V LK G VIP E Sbjct: 227 LDAGLQSDSDERDDRWVNSLREDIMQANVRLDTNFVQSKILLKDIVDLKEGDVIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + I +ANG ++ ++G+ N+ +++ + I + Sbjct: 287 E--YITNANGVPMFKVDIGQSNGNFALKVNEVIERTK 321 >gi|329888223|ref|ZP_08266821.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC 11568] gi|328846779|gb|EGF96341.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC 11568] Length = 352 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 100/270 (37%), Gaps = 6/270 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 76 RLVRLMTTSLRNFTSDNVEVSLDTISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 135 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + I Q N Sbjct: 136 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILNDARQAFEPLTPVHFN 195 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + +E+ L++P TL ++ L+ Sbjct: 196 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRVELLLPYSTLEPIRKMLLQQFMG 253 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + ++ ++ L V+ LK+G + ++ + Sbjct: 254 EKFG-RDNIWEGHLATELWTTETEVRCVLDEQQMPLSKVLDLKVGDTLMLNVTPESEVSV 312 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A + + +GR G++ +R+ I+ D Sbjct: 313 RAGSIPLTTGRMGRKGQHIAVRVEGPISTD 342 >gi|226941271|ref|YP_002796345.1| flagellar motor switch protein FliM [Laribacter hongkongensis HLHK9] gi|226716198|gb|ACO75336.1| FliM [Laribacter hongkongensis HLHK9] Length = 329 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 7/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + + +IS + K+S I + + + + Sbjct: 57 ERFARNLRIGLFNFIRRNAEISVGPVKVQKYSEFIRNLVVPTNLNLCHVKPLRGTALLIF 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++NL G+ ++ R + E+++ +R + + + + Sbjct: 117 DPDLVFLVVDNLFGSDGRYHVRVEGRDFTPTEQRIIRRLLDVVFSEYQKAWEPVYPIEFL 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N E V ++ + + F + +P +++ LSS Sbjct: 177 YMR-SEMNTQFANI-ATPTEVVVSMTFRIELGAGGGDFHVCMPYS-MVEPIRDQLSSTMA 233 Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + +R+ V + + + TL D++ LK G VIP E A + Sbjct: 234 ADRTEIDNRWVSLLSRQVQIAEVELVATLAEAQITLGDILNLKTGDVIPVEIPESIVADV 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 S G + C G Y +R+ + + Sbjct: 294 S--GIPVLDCRYGTANGQYALRVERLLAGAHEL 324 >gi|114570494|ref|YP_757174.1| flagellar motor switch protein FliM [Maricaulis maris MCS10] gi|114340956|gb|ABI66236.1| flagellar motor switch protein FliM [Maricaulis maris MCS10] Length = 376 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 101/269 (37%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 101 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAQQLDNYGLLTVD 160 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R I + Q + + + Sbjct: 161 SNLIYSIVDVLLGGRRGTSAMRIEGRPYTTIERMLVQRMIEVVLGDAKQAFAPLTDVEFD 220 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + + + + +E+ L++P TL ++ L+ Sbjct: 221 LERVETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 278 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ ++ +L V LK+G + + L Sbjct: 279 EKFG-RDNIWEGHLATELWSTKMEVQAVLDEQRVSLGTVANLKVGDTLYLDASPSSDVEL 337 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 + +GR+G N +R++ ++ Sbjct: 338 RCGQVPLTRGRMGRIGHNVALRLSGPLSP 366 >gi|302383953|ref|YP_003819776.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides ATCC 15264] gi|302194581|gb|ADL02153.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides ATCC 15264] Length = 356 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 80 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 139 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + I A N Sbjct: 140 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILADAQAAFEPLTPVHFN 199 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 200 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRVELLLPYATLEPIRKMLLQQFMG 257 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ + L V+ LK+G + + + Sbjct: 258 EKFG-RDNIWEGHLATELWTTDTEVRAVLDEQSCPLSTVLNLKVGDTLMLNATPDSDISI 316 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +GR G++ IR+ I+ + Sbjct: 317 RCGSIPVTTGRMGRKGQHIAIRVEGPISVE 346 >gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC2047] Length = 329 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 20/275 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + + ++ ++ KFS S + Sbjct: 63 ERFARFTEQSMFNLLRETPVVTAAKIENIKFSEYTQMLGIPSSLSLVKIHPLRGTAMFVL 122 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV+ L++ G + R + E+++ ++ ++Q+ + Q T + Sbjct: 123 DADLVVNLVDRFFGG-GVHDNAIGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMD---- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N +E V + IE + IP +L+ + Sbjct: 178 ----IDFEYLSNEENPAMIKAISPSEVVVLSTFEIKIEEKGGRIQVAIPYS-MLEPVREA 232 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S + +N+ D + R +V I R+ +K TL++++ K G VIP E Sbjct: 233 LDSGVQVDNEYTDGNWAEALQRDLRYASVPISCRVAERKITLREILNFKAGDVIPIDMPE 292 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + IL ANG IY +G ++ ++I +I+ Sbjct: 293 SS--ILMANGVPIYEAAVGASNEHLALKIKRQIDR 325 >gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] Length = 324 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 86/267 (32%), Gaps = 7/267 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + KFS +HS + Sbjct: 60 ERFARHLRVRLFNMLRRSAELSVVGTRVSKFSEYMHSLFVPTSLNLVRAHPLHGTGLFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + +E ++ + + + + Sbjct: 120 DPKLVFILVDNFFGGDGRYHTRIEGRDFTPMEMRVVHGILEGAFEDMVKAWQPVMDLRFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + E V ++ ++ + +P +++ L + + Sbjct: 180 FLNSEV--NPQFANIVSPTEIVVISEFHIELDGGGGNLHFTLPYS-MIEPIREQLDTGLQ 236 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ D + + V + + + + T+++++ ++ G +IP E L Sbjct: 237 SDRSDVDQRWMKALEEEIQDAEVEVSSTLTETEVTVQELLDIQPGDIIPINLPE--TVTL 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 ++ + G I++TDRI Sbjct: 295 KVEDIPLFRGKFGVSDGKNAIQVTDRI 321 >gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] Length = 322 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + S Sbjct: 58 ERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + Sbjct: 118 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAWAPVLSVE-- 174 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +DY+ N ++N E V ++ ++ + +P +++ Sbjct: 175 ------LDYIGSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 227 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + + +LNV + + L+DV+ K G +IP E Sbjct: 228 LDAGVQSDVDEKDDRWGKSLQQDVKELNVELSAAVAHVDVPLQDVLKFKAGDIIPVDIPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ANG +LG + Y++++ + + Sbjct: 288 --FITVRANGLPTIKGKLGVSNEKYSVQVVENYKLPK 322 >gi|188582489|ref|YP_001925934.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179345987|gb|ACB81399.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 405 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 94/273 (34%), Gaps = 4/273 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + SW + + Sbjct: 122 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADSWEGSGLVTVE 181 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L + ++ LLG + +L R +T+E L +R + I L Sbjct: 182 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEMSFQPLSPVRFG 241 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ T I + + ++ ++ P T+ + + S Sbjct: 242 IDRIETNPRFATIT--RPGNAAILITLKLDMDGRGGGMQILFPYATVEPIRDLLMQSFMG 299 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + A + +Q +V ++ ++ LK V+ LK+G + F + + Sbjct: 300 ERLGRDQVWESHLATEIWQADVEMEAVLHEVTLPLKRVLNLKVGDTLMFDRKPSDLITVR 359 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GR+ +++ + + +L Sbjct: 360 CGDWALTQGRIGRIDDAIAVQVARPLRQSRTTL 392 >gi|121997289|ref|YP_001002076.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1] gi|121588694|gb|ABM61274.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1] Length = 381 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 113/308 (36%), Gaps = 18/308 (5%) Query: 8 KNTSPLHPILL---ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 +++ L P R+ G T+E I+ G L++ L + + ++S T Sbjct: 30 EDSGELRPYTFTAEERIVR--GRMPTLEMINERFGRLFRIGLFNMLR----RTPEVSVTG 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + KF +H+ + + + LV +++N G ++ Sbjct: 84 VEMMKFGEYVHTLFVPTSLNIIRVPPLRGSGLFVIDPKLVFLVVDNFFGGGGHFYLKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLSNEFVTT 183 R + E+++ + + Q L + + ++ +++ + N E V Sbjct: 144 REFTPTEQRVIRLMLDQAFDDLREAWNPVLGVDF---EYVNMEVNPQFANIVSPTEVVVV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVN 241 ++ ++ + +P T+++ L + +S+ D + V Sbjct: 201 SKFHVELDGGGGDIHVTLPY-TMVEPIREILDAGVQSDRNDVDDRWAKALREEMKTAPVT 259 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + + TL+D++ LK G VIP E+ + ++ G N +RI Sbjct: 260 LHSTLARSEITLRDLMHLKAGDVIPIEMPERVVVEVE--EVPVFYGTYGVCEGNAALRID 317 Query: 302 DRINFDQK 309 +++ ++ Sbjct: 318 EKVQAPER 325 >gi|163852467|ref|YP_001640510.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|218531223|ref|YP_002422039.1| flagellar motor switch protein FliM [Methylobacterium chloromethanicum CM4] gi|240139804|ref|YP_002964281.1| flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|254562219|ref|YP_003069314.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|163664072|gb|ABY31439.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|218523526|gb|ACK84111.1| flagellar motor switch protein FliM [Methylobacterium chloromethanicum CM4] gi|240009778|gb|ACS41004.1| flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|254269497|emb|CAX25463.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 406 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 95/273 (34%), Gaps = 4/273 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + +W + + Sbjct: 123 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADAWEGSGLVTVE 182 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L + ++ LLG + +L R +T+E L +R + I L Sbjct: 183 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLELSFQPLSPVRFG 242 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ T I + + ++ ++ P T+ + + S Sbjct: 243 IDRIETNPRFATIT--RPGNAAILITLKLDMDGRGGGMQILFPYATVEPIRDLLMQSFMG 300 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + A + +Q +V+++ ++ LK V+ LK+G + F + + Sbjct: 301 ERLGRDQVWESHLATEIWQADVDMEAVLHEVTLPLKRVLNLKVGDTLMFDRKPSDLITVR 360 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GR+ ++I + + +L Sbjct: 361 CGDWALTQGRIGRIDDAIAVQIARPLRQSRTTL 393 >gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105] gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105] Length = 348 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 108/312 (34%), Gaps = 11/312 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H+ P + R+ G T+E I + + + M +IS Sbjct: 30 THEGVRPYNLATQERIVR--GRMPTLEII----NERFARLIRIGLFNFMRRSPEISVGPV 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + K++ I + + ++ N +LV +++NL G ++ R Sbjct: 84 KVLKYNEFIRNLVVPTNLNIMAMKPLRGNALFIFDPSLVFAVIDNLFGGDGRFHTRVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + I + + P +E V T + Sbjct: 144 DFTQTEQRIIARMLEVIREEFVKAWAPVFPLKPEYLRSEMHTQFA--NIATPSEIVVTTS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ + S + IP T+ L+ S Q + + ++ V++ Sbjct: 202 FSIELGAGGGSLHICIPYSTMEPIRDLLYSSMQGDQAEPDKRWVTMLKKQVQMAEVDLVA 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + T+ D++ L+IG VIP + +++C G G Y +++ + + Sbjct: 262 SLASTQLTVADIMELRIGDVIPIEI--DKVIEARVDNVPVFNCSYGTSGGQYALKVEEVL 319 Query: 305 NFDQKSLKNFLH 316 +S + L+ Sbjct: 320 AVSNESHADALN 331 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 116/282 (41%), Gaps = 14/282 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + G L L + + M LD +++ + I+S + S Sbjct: 52 RTLELIHETYGRLVATSLSSLVRGSMRLD----FSAIDQVPYEEFINSLIPPAMIVIISW 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + N+ + L++ LLG S +P R+ + +E L + + + L + Sbjct: 108 ENTGLSMVLEMNLNITLALVDRLLGGSG--LPPPSPRAPTDIENALIAKLVDRHLVALEE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T S + +NE V I M++ I +++ L IP LL+ Sbjct: 166 AWRTVYPVSLTFVGTETNPEFAQIV--PANEMVVLITMDIGIGDLSGIMSLAIPYS-LLE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TLKDVVTLKIGQV 264 + LS+Q + + D YQ LNV ++ ++ L L+D++ L++G Sbjct: 223 PIVNHLSAQRFFVKKKAE-NDIEREYVYQHVLNVMVNLQVCLGHMHIPLRDLINLRVGDT 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + + + K+ + GRVGKN I+IT+ + Sbjct: 282 LLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITEVLRE 323 >gi|197104384|ref|YP_002129761.1| flagellar motor switch protein FliM [Phenylobacterium zucineum HLK1] gi|196477804|gb|ACG77332.1| flagellar motor switch protein FliM [Phenylobacterium zucineum HLK1] Length = 358 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 102/269 (37%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + S ++ + Sbjct: 83 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILSVFRAEELNNYGLLTVD 142 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + + A + S Sbjct: 143 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMVEVVLADAREAFEPLTPVSFT 202 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 203 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 260 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + N+ + ++ ++ +L+ V+ LK+G + + L Sbjct: 261 EKFG-RDNIWESHLATELWTTNMEVRAVLDEQQVSLQKVLDLKVGDTLMLNATPDSLIEL 319 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 A + +GR + +R+ ++ Sbjct: 320 RAGAIPLTRGRMGRRNHHIAVRVEAPLSP 348 >gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] Length = 326 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 14/308 (4%) Query: 2 RGQSI-HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 QS + P + R+ G T+E I + + L M ++ Sbjct: 25 SEQSTANPGFRPYNLATQERIVR--GRMPTLEII----NERFARLLRLGLFNFMRRSANV 78 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + KFS + + + + LV +++NL G +P Sbjct: 79 TAGPVRVMKFSEFVRNLAAPSNLNLVHIKPLRGTSLFVFDPTLVFLVVDNLFGGDGRFLP 138 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R + E+++ +R + + + + NE Sbjct: 139 KTEGRDFTQTEQRIIQRLLNLVFDSYGKSWHPVYPIEFEYLRAET--NTQFANVATPNEV 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQL 238 V + +V + +P +L+ LSS + E + + +++ Sbjct: 197 VVATTFEVNFGSVVGEMHICMPYS-ILEPIRDLLSSTLQGEALEVDKRWVGRLSKQVQSA 255 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + + + L ++ +K+G VIP E S +G + C+ G Y + Sbjct: 256 EVTLLANLTHAQVRLDQILNMKVGDVIPLDIPE--FVTASVDGVPVMECKYGISNGRYAL 313 Query: 299 RITDRINF 306 R+ + Sbjct: 314 RMEKMLAS 321 >gi|292493590|ref|YP_003529029.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4] gi|291582185|gb|ADE16642.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4] Length = 349 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 96/280 (34%), Gaps = 24/280 (8%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +D++ + Q KFS IH+ + +S Sbjct: 61 ERFVRQLRRSLFNLFRRAIDVTVSGMQMVKFSEYIHTLFVPTSLNMVQMSPLQGTSLFVF 120 Query: 100 SNNLVITLLENLLGASH-----ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 LV +++N G S + ++ R + E ++ + + ++ A L Q Sbjct: 121 DPKLVFMMVDNYFGGSGRAYARRSYARIEGREFTPTEVRVVQLVLEKVFADLEQAWEPVL 180 Query: 155 ESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +YL+ N +E V + + F + +P +L+ Sbjct: 181 AV--------HFEYLQAEPNPQFATIVSPSEVVVVSTFFVEFDGGGGEFHITLPYA-MLE 231 Query: 209 TTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L +S + E K + V + + + +L++++ L+ G ++P Sbjct: 232 PIRELLEVGRQSGSSQVDERWDQALQEKILEAEVELSCTLAETQLSLREILALEPGDILP 291 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + A+G ++ G NY +++ + + Sbjct: 292 IELP--SILTAQADGVPVFRARYGVHNDNYALKVVEPLPH 329 >gi|220924581|ref|YP_002499883.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS 2060] gi|219949188|gb|ACL59580.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS 2060] Length = 403 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 101/276 (36%), Gaps = 4/276 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W ++ + Sbjct: 120 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPMPTLLGVFKADLWENSGLLTVD 179 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L L+ LLG T +L R +++E L +R + I L Sbjct: 180 SSLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDLEASFQPLSPVRFQ 239 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ + R +N I++ + +E ++ P T+ + L S Sbjct: 240 IDRIES-NPRFATITRPAN-AAILIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQSFMG 297 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + A + +Q ++ ++ ++ L+ V++L++G I F + L Sbjct: 298 EKLGRDHVWEGHLATEIWQADLAVEAVLHEMTLPLRRVLSLEVGDTIMFDAKPTDLITLR 357 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GR+ + +++T + + + F Sbjct: 358 CGDWALTQGRIGRLDDSIAVQVTRPLRRARTTFAAF 393 >gi|221235077|ref|YP_002517513.1| flagellar motor switch protein FliM [Caulobacter crescentus NA1000] gi|300680949|sp|B8GXB5|FLIM_CAUCN RecName: Full=Flagellar motor switch protein FliM gi|220964249|gb|ACL95605.1| flagellar motor switch protein fliM [Caulobacter crescentus NA1000] Length = 374 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 110/315 (34%), Gaps = 20/315 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54 N + +L L+G D +T + + + + LP + Sbjct: 53 NQDEIDSLLGFDLSGDGSDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 112 Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 +V++S + S +F ++S + + + + +NL+ ++++ LLG Sbjct: 113 SDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 172 Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T ++ R +T+E+ L +R I + L S +L+ Sbjct: 173 RRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVSFSLDRLETNPRFAAIA 232 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 + + + + +E+ L++P TL ++ L+ K + Sbjct: 233 RPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 289 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + + + + ++ ++ L V+ +++G + + L A + +GR Sbjct: 290 ATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGR 349 Query: 292 VGKNYTIRITDRINF 306 + +R + Sbjct: 350 RNHSIAVRAEAPLTP 364 >gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB] gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB] Length = 338 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 97/273 (35%), Gaps = 7/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M + +IS + K+S I + + Sbjct: 59 ERFARYLRIGLFNYMHRNAEISVGPIRVQKYSEFIRNLVVPTNLNLVIAKPLRGTALFVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ + + + ++ + + Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIQGLLNVVFTEYSKSWKPVYDINFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N +E V + + + + P +L+ L S + Sbjct: 179 YIR-SEMNSQFANI-ATPSEIVVSTTFTLEFGGATADMHICFPYS-MLEPIRDLLYSTMQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ + + I ++ V I + K TL ++ LK+G VIP +K A++ Sbjct: 236 SDQLSSDKRWIGTLRKQLQGAEVEIVALLGSGKITLGQILKLKVGDVIPLHIPDKIEALV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + C G+ Y +++ I ++ Sbjct: 296 --DSVPLMECTYGQQSGQYALKVDRFIASSPET 326 >gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688] gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688] Length = 334 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 96/270 (35%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M V++S + K+S + + + ++ + Sbjct: 58 ERFARLLRIGLFNFMRRSVEVSVGPVRISKYSEFVRNLVVPTNLNLVHMNPLRGTGLMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++++N+ G ++ R + E+++ +R +A + + + Sbjct: 118 DPSLVFSIVDNMFGGDGRFHTRIEGRDFTQTEQRIIQRVLAIVIENYEKSWEPVYQVKFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE + ++ + P +++ L+S + Sbjct: 178 YLR-SEMNTQFANI-ATPNEVIVATTFSIELGPAGGEIHFCFPYS-MIEPVRDLLTSSLQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++ V + + + L DV+ +K+G VIP E A + Sbjct: 235 GEVLGVDKRWVRLMTQQIQAAEVELVANLAKARMQLGDVLNMKVGDVIPLNISETIEAHV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + C+ G Y++R+ + + Sbjct: 295 --DNVPVMECKYGVFNGQYSLRVEKLLRAN 322 >gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans] gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] Length = 332 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 5/266 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + I Sbjct: 58 ERFSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGIGLIVL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV L++NL G ++ R + E+++ +R + I + Sbjct: 118 DPNLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQN 218 +++ N NE V + + V+ +P + L++ S Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTSSMQG 235 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + I ++ V I + K TL D++ +KIG +I E Sbjct: 236 ETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPE--QVTAE 293 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 +G + C G++ Y +R+ I Sbjct: 294 VDGVPVMECSYGKLNGQYALRVEKLI 319 >gi|295688787|ref|YP_003592480.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756] gi|295430690|gb|ADG09862.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756] Length = 369 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 95/269 (35%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 94 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 153 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R I + L + + Sbjct: 154 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVAFS 213 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + +E+ L++P TL ++ L+ Sbjct: 214 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 271 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ ++ L V+ +++G + + L Sbjct: 272 EKFG-RDNIWEGHLATELWTTQMEVRAVLDEQQLPLSRVLNMQVGDTLMLNATPDSLVEL 330 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 A + +GR + +R + Sbjct: 331 RAGAIPLTRGRMGRRNHSIAVRAEAPLTP 359 >gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum JL354] Length = 339 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 6/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +++S S +F ++ + + + +W + Sbjct: 69 ERMVRSFATSMRNLTSDAIEVSLDDIASVRFGDFMNRVPLPCMIAVFKVPAWQDYGLVTI 128 Query: 100 SNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 NL+ +++ LLG ++ R+ +T+E L + I + + + Sbjct: 129 EANLIYAVVDALLGGRKGAAPRKIEGRAFTTIETTLVSKMIELVLREFSTAFEPIAPITM 188 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 LE + + + ++ +F +++P T L+ LS + Sbjct: 189 ELERIETSPRFAAIAGPTN--VASAATFAVDMDGRGGNFTILLPFAT-LEPVRGKLSQRF 245 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 E D D + + V I T + ++ L DV +L+IGQ IPF Sbjct: 246 MGEKLGGDNTWRDHMRNEILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFE 305 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + G + ++GR + I I D I Q Sbjct: 306 VCCGGVPLARAQIGRQRNHVAIGIVDTIKQGQ 337 >gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp. Marseille] gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp. Marseille] Length = 332 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 91/266 (34%), Gaps = 5/266 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + I Sbjct: 58 ERFSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGTGLIVL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV L++NL G ++ R + E+++ +R + I + Sbjct: 118 DPNLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQN 218 +++ N NE V + + V+ P + L++ S Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTSSMQG 235 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + I ++ V I + K TL D++ ++ G +IP + A + Sbjct: 236 ETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTITAEV- 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 + + C G++ Y +R+ I Sbjct: 295 -DSVPVMECSYGKLNGQYALRVEKLI 319 >gi|34498585|ref|NP_902800.1| flagellar motor switch protein FliM [Chromobacterium violaceum ATCC 12472] gi|34104439|gb|AAQ60797.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 334 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 95/274 (34%), Gaps = 7/274 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + + +IS + K+S I + + + + Sbjct: 58 ERFARNLRIGLFNFLRRNAEISVGPVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++NL G+ ++ R + E+++ R + + + Sbjct: 118 DPDLVFLIVDNLFGSDGRYHVRVEGRDFTPTEQRIIHRLLEVVFTECQKAWEPVYPIEFV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N E V + ++ + F + +P +++ LSS + Sbjct: 178 YLR-SEMNTQFANI-ATPTEVVVAMTFHIELGAGGGDFHICLPYS-MVEPIRDLLSSTMQ 234 Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ ++ + V + + K TL ++ LK G V+ E+ A + Sbjct: 235 ADRTEVDNRWVNLMTHQVQAAEVELVASLAHAKVTLGQILNLKNGDVVMIEIPERVEADV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 S G ++ G V Y +++ + + L Sbjct: 295 S--GIPVFEASYGTVQGRYALKVEKILAGTNEFL 326 >gi|23009967|ref|ZP_00050822.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 316 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 96/274 (35%), Gaps = 6/274 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W + + Sbjct: 33 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADPWEGSGIVTVE 92 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L + ++ LLG + +L R +T+E L +R I I + L Sbjct: 93 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMNLVRRLIDIILSDLELSFQPLSPVRFG 152 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ T I++ + ++ ++ P T+ ++ L+ Sbjct: 153 IDRLETNPRFATIT--RPGNAAILISLKLDMDGRGGGMQILFPYATVESIRDLLMQSFMG 210 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + A + +Q ++ ++ ++ LK V+ LK+G + F + + Sbjct: 211 ER-LGRDQVWESHLATEIWQADLEMEAVLHEVTLPLKRVLGLKVGDTLMFDRKPTDLITV 269 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GR+ ++I + + +L Sbjct: 270 RCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTL 303 >gi|167645399|ref|YP_001683062.1| flagellar motor switch protein FliM [Caulobacter sp. K31] gi|167347829|gb|ABZ70564.1| flagellar motor switch protein FliM [Caulobacter sp. K31] Length = 377 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 108/313 (34%), Gaps = 20/313 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54 N + +L ++G D +T + + + + LP + Sbjct: 56 NQDEIDSLLGFDMSGDGNDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 115 Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 +V++S + S +F ++S + + + + +NL+ ++++ LLG Sbjct: 116 SDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 175 Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T ++ R +T+E+ L +R + + S L+ Sbjct: 176 RRGTAAMRIEGRPYTTIERVLVQRMVEVVLHDAKAAFEPLHPVSFTLDRLETNPRFAAIA 235 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 + + + + +E+ L++P TL ++ L+ K + Sbjct: 236 RPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 292 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + + + + ++ ++ L V+ LK+G + + L A + +GR Sbjct: 293 ATELWTTQMEVRAVLDEQQLPLSRVLDLKVGDTLMLNATTDSLVELRAGSIPLTRGRMGR 352 Query: 292 VGKNYTIRITDRI 304 + +R + Sbjct: 353 RNHSIAVRAEAPL 365 >gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 269 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 26/243 (10%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D SS+ S SG Sbjct: 51 DRLPMLHVVFDRLATACSDAAKHLAASSTF---------------------YSLNGIASG 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 90 RFGEFLDAYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPPVEDERNFS 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L ++ LE + R SN+ V + Sbjct: 150 AIELRIAQMVFEQVGKALESSFGLVSQTPFRLER-METRMEFAVIGRRSNKAVQA-KFLL 207 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N L+IPQ T+L +LS E+ + D + A + + NV + + Sbjct: 208 QALNRGGEMFLVIPQ-TVLNPLRPALSKVLTGESAARDPHWAEQIAAEVQKTNVRLKAVL 266 Query: 247 NLK 249 + Sbjct: 267 EER 269 >gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] Length = 336 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 89/254 (35%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + +IS + K+S I + + + NL+ +++NL G Sbjct: 74 MRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFG 133 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 134 GDGRFHMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRMEMHTEFA--N 191 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V T + ++ + + + +P T+++ L+S + E + + Sbjct: 192 VATPNEVVITTSFSIELGSNGGDVHICMPY-TMIEPIRDRLTSAIQGEALEVDKRWLRLL 250 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + K + D++ +K+G VIP C +G + C G Sbjct: 251 SQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPLEL--DDCVTAKVDGVPVMECNYGT 308 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 309 FNGQYALRVNRMLN 322 >gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] Length = 335 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 86/254 (33%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + +IS + K+S I + + + NL+ +++NL G Sbjct: 73 MRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTDVEQRIIQRMLQLVFEHYARAWQPVYPIDFEFLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V T ++ + N + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVTTTFSLELGNNGGDVHICMPY-TMIEPIRDRLTSAIQGEALEVDKRWLRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVELIADLATANVQVSDILNMKVGDVIPLEL--DDVVTAKVDGVPVMECNYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|83858803|ref|ZP_00952325.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83853626|gb|EAP91478.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 385 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 100/269 (37%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 110 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAKQLDNYGLLTVD 169 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R I + A Q + E + Sbjct: 170 SNLIYSIVDVLLGGRRGTSAMRVEGRPYTTIERTLVQRMIEVVLADARQAFAPLTEVDFD 229 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 230 LDRVETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 287 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ + L +V+ LK+G + L Sbjct: 288 EKFG-RDNIWESHLATELWSTKMEVSAVLDEMQKPLGEVMQLKVGDTLMLDAGPDGLIEL 346 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 + +GR+G N +R+ ++ Sbjct: 347 RCGTVPLAHGHMGRIGHNIGVRLDRPLSA 375 >gi|207728361|ref|YP_002256755.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2] gi|206591607|emb|CAQ57219.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2] Length = 335 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R +A + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVIPLEL--DDSVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|224826626|ref|ZP_03699727.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002] gi|224601227|gb|EEG07409.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002] Length = 335 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 94/264 (35%), Gaps = 7/264 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + + +IS + K+S I + + + + Sbjct: 58 ERFARNLRIGLFNFIRRNAEISVGPVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++NL G+ ++ R + E+++ +R + + + Sbjct: 118 DPDLVFLVVDNLFGSDGRYHVRVEGRDFTPTEQRIIRRLLEVVFTEYQKAWEPVYPIEFV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N E V + ++ + F + +P +++ LSS + Sbjct: 178 YLR-SEMNTQFANI-ATPTEVVVAMTFHIEMGAGGGEFHVCLPYS-MVEPIRDVLSSTMQ 234 Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + +R+ V++ + TL V+ LK G V+ E A + Sbjct: 235 ADRTEVDNRWVSLMSRQVQAAEVDLVATLAGTSVTLGQVLNLKQGDVVTLEIPEMIIADV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRIT 301 S G + C G V +Y +++ Sbjct: 295 S--GIPVVECTYGTVQGHYALKVE 316 >gi|300113610|ref|YP_003760185.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113] gi|299539547|gb|ADJ27864.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113] Length = 336 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 99/299 (33%), Gaps = 23/299 (7%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKE 79 + I + L + + + F+ + +++ Q KFS +H+ Sbjct: 41 DFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQVLKFSEYLHTLFM 100 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + LV L++ G S E +L NR + E + + + Sbjct: 101 PTSLNLVQIHPLRGAGLFVFDPKLVFMLVDRYFGGSGEFYNRLENREFTPTEMHIIQLVL 160 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENV 193 + L Q + +YL+ N +E V ++ E Sbjct: 161 ERTFTDLKQAWEPVL--------AINFEYLQTEFNPRLATIASPSEIVVVSTFHVEFEGG 212 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKT 251 F + +P TLL+ L + K + D + V + + + Sbjct: 213 GGEFHIALPY-TLLEPVRELLDTGKKDDFTQADGGWNQALRKNVSDAEVELSCTLTEIRL 271 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +LK+V+ LK G ++P + A+G ++ G + +++ +R+ + Sbjct: 272 SLKEVLALKSGDILPIELP--STVTALADGVPVFRVRYGIHNSSRALKVVERLLSPESF 328 >gi|329849711|ref|ZP_08264557.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum C19] gi|328841622|gb|EGF91192.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum C19] Length = 388 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 102/281 (36%), Gaps = 6/281 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 111 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 170 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + + Q + N Sbjct: 171 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDARQAFEPLTAVNFN 230 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L+ + + + +E+ L++P T L+ L Q Sbjct: 231 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRIELLLPYAT-LEPIRKMLLLQFM 287 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E D A + + + + ++ ++ L V+ LK+G+ I + + L Sbjct: 288 GEKFGRDNIWESHLATELWTTQMEVRAVLDEQQVPLSRVLNLKVGETIVLNAQADSPVQL 347 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318 + + +GR G + +R+ + K + K+ Sbjct: 348 RCGQIPLTTGRMGRKGHSIAVRVDTPLALSTKRRLTQMKKK 388 >gi|300696948|ref|YP_003747609.1| flagellar motor switching and energizing component [Ralstonia solanacearum CFBP2957] gi|299073672|emb|CBJ53192.1| flagellar motor switching and energizing component [Ralstonia solanacearum CFBP2957] Length = 335 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R +A + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVIPLEL--DDFVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 403 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 4/276 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W ++ + Sbjct: 120 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADLWENSGLVTVD 179 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL L+ LLG T +L R +++E L +R + I L Sbjct: 180 SNLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDLEASFQPLSPVRFQ 239 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ + R +N I++ + +E ++ P T+ + L S Sbjct: 240 IDRLES-NPRFATITRPAN-AAILIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQSFMG 297 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + A + +Q V ++ ++ LK V+ L++G I F + L Sbjct: 298 EKLGRDHVWEGHLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTILFDAKPTDLITLR 357 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GR+ + +++T + + + F Sbjct: 358 CGDWALSQGRIGRLEDSIAVQVTRPLRRARTTFAAF 393 >gi|77165630|ref|YP_344155.1| flagellar motor switch protein FliM [Nitrosococcus oceani ATCC 19707] gi|254434449|ref|ZP_05047957.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27] gi|76883944|gb|ABA58625.1| Flagellar motor switch protein FliM [Nitrosococcus oceani ATCC 19707] gi|207090782|gb|EDZ68053.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27] Length = 336 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 102/305 (33%), Gaps = 22/305 (7%) Query: 23 GKLGDKKTIE--------KISSSL-------GYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 LGD+KTI +I+ + + + + +++ Q Sbjct: 29 RVLGDEKTIRPYDFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQV 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KFS +H+ + + LV L+E G S + +L NR Sbjct: 89 LKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENREF 148 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E + + + + A L Q + L + S+E V + Sbjct: 149 TPTEVHIIQLVLERTFADLKQAWEPVLAVNFEYLQTELNPRLATIAS--SSEMVVVSTFH 206 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245 + E F + +P TLL+ L++ K + D + V + Sbjct: 207 VEFEGGGGEFHIALPY-TLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCT 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +L +++ LK G ++P + A+G ++ G + +++ +R+ Sbjct: 266 LTEIQLSLGEILALKSGDILPIELP--STVTALADGIPVFRVRYGIHHGSRALKVVERLL 323 Query: 306 FDQKS 310 + Sbjct: 324 SPESF 328 >gi|300693352|ref|YP_003749325.1| flagellar motor switching and energizing component [Ralstonia solanacearum PSI07] gi|299075389|emb|CBJ34684.1| flagellar motor switching and energizing component [Ralstonia solanacearum PSI07] Length = 335 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFDHYGKAWQPIYPIEFEALRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTSFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVELVAHLANANVQVSDILNMKVGDVIPLEL--DDSVTAKVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|325981184|ref|YP_004293586.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212] gi|325530703|gb|ADZ25424.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212] Length = 325 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 7/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M VDI+ + KFS + + + + Sbjct: 58 ERFARLLRIGLFNFMRRTVDIAVGPVKVIKFSEFVRNLVVPTNLNMVHMKPLRGTALFVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L+ +++NL G ++ R + E+++ +R + + + + Sbjct: 118 DPELIFLIVDNLFGGDGRYHTRVEGRDFTQTEQRIIQRLLGVVFDEYEKSWKSVYPIQFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V + ++ + N + IP +++ +L S + Sbjct: 178 YVRSEMNPQFATI--ATPNEVVVCVTFDIDMGNKGGGLHVCIPYS-MVEPIRDTLYSALQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + I +++ V + + K T + +++++ G +IP + + Sbjct: 235 GDHLEVDKRWIKLLSQQVQGAEVELVANLGGAKVTFEQILSMQSGDIIPLEIPKSISVCV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + +Y +R+ I+ + Sbjct: 295 --DGVPVMDCRYGTMNGHYALRVNSMISRSE 323 >gi|17548599|ref|NP_521939.1| flagellar motor switch protein FliM [Ralstonia solanacearum GMI1000] gi|17430847|emb|CAD17529.1| probable flagellar motor switch protein flim [Ralstonia solanacearum GMI1000] Length = 335 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G V+P +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL--DDSVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|257095345|ref|YP_003168986.1| flagellar motor switch protein FliM [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047869|gb|ACV37057.1| flagellar motor switch protein FliM [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 334 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 96/272 (35%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M +IS S + K+S + + + Sbjct: 59 ERFARYLRIGLFNYMHRSTEISVGSIRVQKYSEFTRNLVVPTNLNLINAKPLRGTALFVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++N+ G ++ R + E+++ K + + ++ + + Sbjct: 119 DPSLVFLVVDNMFGGDGRFHTRVEGRDFTATEQRIIKGLLGVVFTEYSRSWKPVYDLTFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N +E V ++ + + P +++ L S + Sbjct: 179 YVR-SEMNSQFANI-ATPSEIVVATTFSIEFGGSTADLHICFPYS-MIEPIRDLLFSTMQ 235 Query: 220 SENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ S D ++ V I R+ +L+ ++ +K+G ++P EK I Sbjct: 236 SDQLSTDRRWVIMLRKQLTNAEVEITARLATATVSLRQILEMKVGDIVPIDIPEK--VIA 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + C G+ G Y I+I + + + Sbjct: 294 QVDDVPLMECRYGQQGGQYAIKIDHFMTIENQ 325 >gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] Length = 335 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 97/270 (35%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + + Sbjct: 58 ERFARLLRIGLFNFLRRTTEVSVGPVKISKYSEFIRNLVVPTNLNLVQMKPLRGTALMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++NL G ++ R + E+++ +R +A + + + Sbjct: 118 DPTLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRVLAIVFETYAKSWEPVYKLEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--Q 217 +++ N NE V + N+ + + + P +++ L+S Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVSTTFNIELGSASGEIHFCFPYS-MIEPIRDLLTSPLQ 234 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + + ++ V + + + TL D++ +K+G VIP E+ A + Sbjct: 235 GEALGVDKRWVRLMTQQIQSAEVMLIADLAKAEMTLGDILNMKVGDVIPLSISEEIEAKV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + C+ G Y +R+ + + Sbjct: 295 --DNVPVMQCKYGVFNGQYALRVEKLLRSN 322 >gi|83747640|ref|ZP_00944676.1| FliM [Ralstonia solanacearum UW551] gi|207739721|ref|YP_002258114.1| flagellar motor switch protein flim [Ralstonia solanacearum IPO1609] gi|9438185|gb|AAF87587.1|AF283286_1 flagellar motor switch [Ralstonia solanacearum] gi|83725692|gb|EAP72834.1| FliM [Ralstonia solanacearum UW551] gi|206593103|emb|CAQ60009.1| flagellar motor switch protein flim [Ralstonia solanacearum IPO1609] Length = 335 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R +A + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G V+P +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPLEL--DDFVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|288942630|ref|YP_003444870.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM 180] gi|288898002|gb|ADC63838.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM 180] Length = 325 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 91/270 (33%), Gaps = 9/270 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L + +IS + KFS +HS + + Sbjct: 62 ERFARYLRVHLFNLLRRSSEISVIGARVTKFSEYLHSLYVPTSLNLVRVYPLHGTALFVF 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + +E ++ K + + + + Sbjct: 122 DPKLVFGLVDNFFGGDGRYYSRIEGRDFTPMEMRVIKNLLDASFSDMQKAWEPVMHLDF- 180 Query: 160 LEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 +F + + + N E V + ++ +E + + P +++ L + Sbjct: 181 --EFINAEVNPQFANIVSPTEIVVINDFHIELEGGGGNMHVTFPYS-MIEPIREVLDTGL 237 Query: 219 KSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ + + V I + + T++ ++ +K G +IP E + Sbjct: 238 QSDRSGVDQRWQRALEEEIPLAKVEISSVLTEVTLTVEQLLEVKPGDIIPVDLPE--TIV 295 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ ++ + G I+I + I Sbjct: 296 LNVEDIPLFRGKFGVSNGINAIKIMEHIKH 325 >gi|186477685|ref|YP_001859155.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815] gi|184194144|gb|ACC72109.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815] Length = 332 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 89/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRTAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + S Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIIHKLLNLVFEHYTAAWKSVRPLSFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 TRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T ++++ +K G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQIPVTFQEILNMKAGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ ++ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAAEQM 326 >gi|299068765|emb|CBJ40005.1| flagellar motor switching and energizing component [Ralstonia solanacearum CMR15] Length = 335 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G V+P +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL--DDAVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|261855321|ref|YP_003262604.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus c2] gi|261835790|gb|ACX95557.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus c2] Length = 347 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 8/274 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + + VDIS + K+S H+ + + Sbjct: 58 LNERFARNFRIRLVSMLRRTVDISIEGVRMMKYSEYSHALYVPTSLTLVHVRPLKGTGLF 117 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + LV L++N G ++ R + E ++ R + Q + + + + Sbjct: 118 MMESQLVFKLVDNFFGGFG-MHAKIEGRDFTPTELRVITRVLEQAIDEVQRSWTPVYPVN 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 ++++ N E V + + +E F +++P +++ L Sbjct: 177 IQTVS-HEMNPQLANI-VSGTEVVVVNSFRIEVEGGGGKFDIVLPYS-MIEPIRDLLDGG 233 Query: 218 NKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + E R+ + ++ + ++ + +L D+ +++G V+PF E Sbjct: 234 MQGDRLEVDERWTQALKRELGRADIELVAQLGEMRMSLADIAHMEVGDVLPFEMPE--QV 291 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +L+A G +Y +LG N ++RI + + Sbjct: 292 VLTAQGLPLYQGKLGVHRGNKSVRIQSPVKERLE 325 >gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] Length = 368 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 102/294 (34%), Gaps = 11/294 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + L + + +++ S + + S + F+ Sbjct: 58 MRAFQALHEGFSREFGASLSGMLRSI----IEVKLISVDQLTYGEFVFSLENPTCFNLLF 113 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + +++ +++ LLG + +R L+ +E +L R L Sbjct: 114 SDKLNGHLILDLNPSIIYPIVDRLLGGGKSSTQSYPSRPLTEIELRLVSRITKSAITALE 173 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E + L + NE + I+ +++ + L IP T + Sbjct: 174 NSWINISELQLRVTQIESNPQLVQIV--PPNEVIVLISFEISMGEMRGIMNLCIPFNT-I 230 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQ 263 + LSS S + + + VN+ + T +++ L +G Sbjct: 231 EPLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELMNLDVGD 290 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 VI K + GK +S ++G++ + I+I D++ + + L K Sbjct: 291 VILTERDVKKGLTIFVEGKPTFSADVGQIKGHKAIQIRDKLPKTRDIVDQHLQK 344 >gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134] gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134] Length = 337 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + DI+ S + KF + + + Sbjct: 63 ERFARSLRTALFNFIRRGADITVGSVRIEKFGDFARNLPMPTNLNLVHMKPLRGTALFVY 122 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + T Sbjct: 123 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLEMTLTSYGNAWRTVYPIETE 182 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V T ++ + V + +P + + ++ Sbjct: 183 YVRSEMHTKFANVATV--NEAVITTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 240 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + +V + ++T+ +V+ L+ G V+P E Sbjct: 241 EKEVDKSWLAKLSTQLRAADVEVVAEFTHVQSTVAEVLALRAGDVLPIELPEH--VFGKV 298 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 NG + C G + Y +R+ IN Sbjct: 299 NGVPVMQCGFGTINGQYALRVERMINHQD 327 >gi|188592199|ref|YP_001796797.1| flim: flagellar motor switching and energizing component [Cupriavidus taiwanensis LMG 19424] gi|170938573|emb|CAP63560.1| FliM: flagellar motor switching and energizing component [Cupriavidus taiwanensis LMG 19424] Length = 339 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 84/269 (31%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + DIS S + KF + + L Sbjct: 62 ERFARSLRTALFNFIRRGADISVGSVRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVY 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + T Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLTSYGNAWRTVHPIETE 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V T ++ + V + +P + + ++ Sbjct: 182 YIRSEMHPKFANV--ATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + V + ++T+ +V+ ++ G V+P EK Sbjct: 240 EKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEK--VFGKV 297 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ IN Sbjct: 298 DGVPVMQCGFGTMNGQYALRVERMINHQD 326 >gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] Length = 329 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 95/271 (35%), Gaps = 7/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +IS + KF + + + N Sbjct: 59 ERFARLFRIGLFNFIRRTPEISVGPVRVLKFGEFVRNLAVPTNLNIIQPKPLRGNGLFIF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ ++ +A + + T Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGREFTQTEQRIIQKMLAVVFETYAKAWETVYPLEFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V ++ + +F + +P T L+ L + + Sbjct: 179 FVR-SEMNPQFANI-ATPNEVVIVTTFDIELGGNGGAFHICMPYST-LEPVKDLLFNNIQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + +R+ + + + TL+ V+ +++G VIP E A Sbjct: 236 GEHLAVDKRWLQLLSRQVQCAEIELAATLGQANITLERVLKMRVGDVIPLNVDENITA-- 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 S +G I C+ G Y ++I + ++ Sbjct: 294 SIDGVPIMECKYGVFNNQYALKIVKMLTTNE 324 >gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 5/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + + Sbjct: 58 ERFARLLRIGLFNFLRRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R +A + + Sbjct: 118 DPNLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFENYAKSWEPVYPVEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 +++ N NE V + + V+ IP T+ I SS Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTSSLQG 235 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + I ++ V I + ++ ++ +K+G +IP + A + Sbjct: 236 ETLEVDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVLAKV- 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C G+ Y +R+ + Sbjct: 295 -DGVPVMECTYGKFNGQYALRVEKLLAQS 322 >gi|53723902|ref|YP_104282.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344] gi|67641904|ref|ZP_00440669.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4] gi|121600665|ref|YP_994775.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1] gi|124385588|ref|YP_001027842.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229] gi|126451066|ref|YP_001082210.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10247] gi|167000456|ref|ZP_02266270.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20] gi|254174753|ref|ZP_04881414.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399] gi|254201359|ref|ZP_04907723.1| flagellar motor switch protein FliM [Burkholderia mallei FMH] gi|254206701|ref|ZP_04913052.1| flagellar motor switch protein FliM [Burkholderia mallei JHU] gi|254357364|ref|ZP_04973638.1| flagellar motor switch protein FliM [Burkholderia mallei 2002721280] gi|52427325|gb|AAU47918.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344] gi|121229475|gb|ABM51993.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1] gi|124293608|gb|ABN02877.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229] gi|126243936|gb|ABO07029.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10247] gi|147747253|gb|EDK54329.1| flagellar motor switch protein FliM [Burkholderia mallei FMH] gi|147752243|gb|EDK59309.1| flagellar motor switch protein FliM [Burkholderia mallei JHU] gi|148026428|gb|EDK84513.1| flagellar motor switch protein FliM [Burkholderia mallei 2002721280] gi|160695798|gb|EDP85768.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399] gi|238522917|gb|EEP86359.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4] gi|243063644|gb|EES45830.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20] Length = 332 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIATQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326 >gi|94314217|ref|YP_587426.1| flagellar motor switch protein FliM [Cupriavidus metallidurans CH34] gi|93358069|gb|ABF12157.1| flagellar motor switch protein FliM [Cupriavidus metallidurans CH34] Length = 336 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 88/269 (32%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + DIS + + K+ + + + + Sbjct: 62 ERFARALRTALFNFIRRGADISVGTVRIEKYGDFVRNLPVPTNLNLVHMKPLRGTALFVY 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + + Q T + Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIRRMLDLTLSSYGQAWRTVHPIEFD 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 N+ V T ++ + V + IP + + ++ Sbjct: 182 YVRSEMHTKFANVAG--PNDAVVTTAFHIELGAVGGQLHICIPFSMIEPLRDLLMNPLQD 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + V + ++T+ +V+ ++ G V+P E + Sbjct: 240 EVEVDKRWLGQLSNQLRAAEVELVAEFTHLRSTVAEVLAMREGDVLPIELPEHIFGKV-- 297 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 NG + C G + Y +R+ +N+ Sbjct: 298 NGVPVMQCGFGTMNGQYALRVERMLNYQD 326 >gi|167834865|ref|ZP_02461748.1| flagellar motor switch protein FliM [Burkholderia thailandensis MSMB43] Length = 332 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLAFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLDIAESISAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 94/268 (35%), Gaps = 7/268 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L +P K + +I TS + + + S + + + A+ W S Sbjct: 36 RLLLALVPD-LKSYCTIAPEIELTSLEYMPYEDAMESIQSPSLIAIANAEGWGSQIACVV 94 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ ++LE +LG T + R L+ +E+KL +R L QC+ + Sbjct: 95 EPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLGRRLAELSLKGLAQCLQDVSPVQFD 154 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + + M+M E+ + L++P TL + L Sbjct: 155 IQSLES--NPRSVMLAAPRTATVLVRMHMQFEDRSGHMALVLPYGTLDEVSAQLAQPFLG 212 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +S S D + V I + L +V+ K GQVI T + Sbjct: 213 GRSPTDSNARKD-MNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVG 271 Query: 278 SANGKEIYSCELGR-VGKNYTIRITDRI 304 N + ++ G+ +R+ + Sbjct: 272 MVNAQPMFQAAFGQRSNGALALRVIQSL 299 >gi|163856451|ref|YP_001630749.1| flagellar motor switch protein FliM [Bordetella petrii DSM 12804] gi|163260179|emb|CAP42481.1| flagellar motor switch protein FliM [Bordetella petrii] Length = 335 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 92/273 (33%), Gaps = 6/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + M + DI+ S + K++ + + + Sbjct: 60 ERFARQLRHLLLNFMRRNADITVGSIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPSLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWEAVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L + Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + +R+ +V++ +++++++ LK+G V+P E I Sbjct: 238 TTLEEVDQRWTHQLSRQVRSADVDLTAEFASIPSSIRELLRLKVGDVLPIEVPE--TVIA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + C G Y +R+ + ++ + Sbjct: 296 NVNGVPLMECSYGVFNGQYALRVQNLFTYESDT 328 >gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] Length = 323 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 106/265 (40%), Gaps = 5/265 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L+ I S + K I + + + S W ++ + LV + E G Sbjct: 61 TPLEFTIDVVSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFG 120 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 A+ I R S E +++ ++ ++ T +S T Sbjct: 121 ATEPKIINRNGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQEFNTET 180 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + +++ + +++P+ + +++ ++ + D Sbjct: 181 FHQSQMF--SCTLSIKCGEAEAHLNILMPRSCH-RPIHEAITRALRAPEKRMDPLWTKRL 237 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ Q +V I+ + TL +++ LK+GQV+P L + K +Y C LG+ Sbjct: 238 RKEVSQAHVQIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGK 297 Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316 +GKN++IR+TD I+ +++ + +H Sbjct: 298 IGKNFSIRVTDPIDEEKEMINELVH 322 >gi|53717666|ref|YP_106652.1| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243] gi|76811753|ref|YP_331656.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b] gi|126441392|ref|YP_001057084.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668] gi|126453439|ref|YP_001064314.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106a] gi|134281495|ref|ZP_01768203.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305] gi|167717395|ref|ZP_02400631.1| flagellar motor switch protein FliM [Burkholderia pseudomallei DM98] gi|167736438|ref|ZP_02409212.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 14] gi|167813512|ref|ZP_02445192.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 91] gi|167822054|ref|ZP_02453525.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 9] gi|167843667|ref|ZP_02469175.1| flagellar motor switch protein FliM [Burkholderia pseudomallei B7210] gi|167892138|ref|ZP_02479540.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 7894] gi|167900650|ref|ZP_02487855.1| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC 13177] gi|167908870|ref|ZP_02495961.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 112] gi|167916909|ref|ZP_02504000.1| flagellar motor switch protein FliM [Burkholderia pseudomallei BCC215] gi|217424100|ref|ZP_03455600.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576] gi|226193119|ref|ZP_03788729.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakistan 9] gi|237814422|ref|YP_002898873.1| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR346] gi|242315986|ref|ZP_04815002.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106b] gi|254184092|ref|ZP_04890683.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1655] gi|254186558|ref|ZP_04893075.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pasteur 52237] gi|254194648|ref|ZP_04901079.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13] gi|254258129|ref|ZP_04949183.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710a] gi|254298640|ref|ZP_04966091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 406e] gi|52208080|emb|CAH34010.1| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243] gi|76581206|gb|ABA50681.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b] gi|126220885|gb|ABN84391.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668] gi|126227081|gb|ABN90621.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106a] gi|134247162|gb|EBA47248.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305] gi|157808681|gb|EDO85851.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 406e] gi|157934243|gb|EDO89913.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pasteur 52237] gi|169651398|gb|EDS84091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13] gi|184214624|gb|EDU11667.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1655] gi|217393163|gb|EEC33185.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576] gi|225934719|gb|EEH30696.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakistan 9] gi|237504112|gb|ACQ96430.1| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR346] gi|242139225|gb|EES25627.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106b] gi|254216818|gb|EET06202.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710a] Length = 332 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326 >gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] Length = 328 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 89/272 (32%), Gaps = 5/272 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + VD++ TS KF + S + + Sbjct: 60 RFARLFRTTLSSALRKIVDMTTTSVDMVKFGEFMRSLPVPTSLHIFKMDPLRGHAIFVLE 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+E G + ++ R + +E++L ++ + + E + Sbjct: 120 SKLVFNLVETFFGGAGGGNVKIEGRDFTAIEQQLTRKVVMLALKDMESAWKPVHEVTMVY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 + V + + +E+ A + + IP T ++ L + +S Sbjct: 180 SRTEINPQFASIV--PPTDVVIVVKFELEMEHTAGTVTVCIPYST-IEPIRTKLYAGFQS 236 Query: 221 E--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + F ++ + V + + T D++ LK+G V+ + Sbjct: 237 DQLEVDHEWMRRFRKQLREAEVEFTVELGRTELTSGDLLQLKVGDVLQLDSDINGHLVAM 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G + G++ N R+ ++ + Sbjct: 297 VEGVPKFLGRPGQMRGNKAFRVEGFKDYGAEI 328 >gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 244 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 84/245 (34%), Gaps = 18/245 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 9 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 69 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 124 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 125 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 178 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 179 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 238 Query: 272 KTCAI 276 Sbjct: 239 SLVMR 243 >gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] Length = 330 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 94/292 (32%), Gaps = 13/292 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ I + L + VDIS S ++ K+S Sbjct: 41 PYDMATQERIVRGRMPALEIINA------RFANSLQIGLYNFLRRGVDISAGSIKTIKYS 94 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 S + S+ I NL+ +++N+ G ++ R + E Sbjct: 95 EFTRSLVVPANINMVSMKPLRGTALITIDPNLIFLIVDNMFGGDGRFHTRVEGREFTLTE 154 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 + + +R + + + + +++ N ++ V + + + Sbjct: 155 QGIIRRLLDVLFENYEKAWKSVYPVRFEYIR-AEMNPQFANIATPTD-VVVASSFELNLG 212 Query: 192 NVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 F + P T+L+ L S Q + I R+ + I + Sbjct: 213 GNRGEFYICTPY-TMLEPIRDLLNNSMQEDHAEVDNNWIKSLTRQVQGAEIEIIANLGHT 271 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + TL ++ ++ G VI + ANG I C G + +Y +++ Sbjct: 272 RVTLHQILNMQEGDVIALDIP--DTVVAMANGVPIMDCHYGILNDHYALKVK 321 >gi|237653569|ref|YP_002889883.1| flagellar motor switch protein FliM [Thauera sp. MZ1T] gi|237624816|gb|ACR01506.1| flagellar motor switch protein FliM [Thauera sp. MZ1T] Length = 336 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M + ++S + K++ + + + + + Sbjct: 59 ERFARYLRIGLFNYMHRNAEVSAGPIKVQKYAEFVRNLVVPTNLNLITAKPLRGTGLVVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ + + + A + + P Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIRGMLDVVFAEYVRAWAPVFNLQPE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N +E V + ++++ + + P +L+ L S + Sbjct: 179 FIR-SEMNSQFANI-ATPSEVVVSTSLSVEFGGSQAEMHICFPYS-MLEPIRDLLYSSMQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ I R+ V + + +L+D+V +++G VIP + A + Sbjct: 236 SDHLTSDRRWIKLLTRQLQTAEVELACSFGTARVSLRDIVDMRVGDVIPLAVQPVLQAEV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G ++ C G Y +R+ I + Sbjct: 296 --DGVPVFECRQGTRNGRYALRVERFITAEDN 325 >gi|254251031|ref|ZP_04944349.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124893640|gb|EAY67520.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 332 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEIPVTFEKILNLRAGDVLPLEIPDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAGDTM 326 >gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16] gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16] Length = 339 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + DI+ S + KF + + L Sbjct: 62 ERFARSMRTALFNFIRRGADITVGSIRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVY 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + A T Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVHPIETE 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V T ++ + V + +P + + ++ Sbjct: 182 YIRSEMHPKFANV--ATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + V + ++T+ +V+ ++ G V+P EK Sbjct: 240 EKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEK--VFGKV 297 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ IN Sbjct: 298 DGVPVMQCGFGTMNGQYALRVERMINHQD 326 >gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II '5-way CG'] Length = 338 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 17/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + V+ S + KF + + L S N + Sbjct: 60 ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +V L++++ G S ++ R S +E ++++ + + + Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPV------ 173 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 I Y++ N E V T+ + I+ + + IP T ++ Sbjct: 174 --HPMPITYIRSEINPQFAAIVAPTEMVVTMAYRLEIDGQGRTIYICIPYST-IEPIKEK 230 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ I+ + + + I+ I + TL+D++ K G V Sbjct: 231 LYTGFQSDQYEVDSRWINRLQERVEEAPLEIEAFIGEARFTLRDILGWKTGDVFSLDRYV 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G + G + IRI R+ Sbjct: 291 SEPVEVRVEGIVRFLARPGIFRHHRAIRIERRVPPP 326 >gi|42766718|gb|AAS45442.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei] Length = 332 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + S Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKSLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326 >gi|300311368|ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae SmR1] gi|300074153|gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 11/288 (3%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R+ G T+E I+ L++ L +IS + K+S I + Sbjct: 44 ERIVR--GRMPTLEIINERFARLFRIGLFNFIH----RTAEISVGPVKVSKYSEFIRNLV 97 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + + + + V L++N+ G ++ R + E+++ R Sbjct: 98 VPTNLNLVHIKPFRGIGLVVFDPQFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRV 157 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + +++ N NE V + + + V+ Sbjct: 158 LEITFETYAKSWEPIYPIEFEFIR-SEMNTQFANI-ATPNEVVVSTTFTVELGPVSGEIH 215 Query: 199 LIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 + P + ++ S Q ++ + I ++ V + + D++ Sbjct: 216 ICTPYSMIEPVRDRLTSSMQGEALEVDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLL 275 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +++G VIP T +G + C G+ Y +R+ ++ Sbjct: 276 HMQVGDVIPLQT--NTTVEAQVDGVPVMECSYGQSNGQYALRVEKLLS 321 >gi|187478203|ref|YP_786227.1| flagellar motor switch protein [Bordetella avium 197N] gi|115422789|emb|CAJ49317.1| flagellar motor switch protein [Bordetella avium 197N] Length = 334 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 91/271 (33%), Gaps = 6/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M DI+ S + K++ + + + Sbjct: 60 ERFARNMRHVLLNFMRRSADITVGSIKIIKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++++L G ++ R +T E+++ +R + + + Sbjct: 120 DPSLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFD 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + E + +R+ ++++ ++++ ++ LK+G V+P E A + Sbjct: 238 SALEEVDQRWSQQLSRQVRSADIDLVAEFARIPSSIRGLMNLKVGDVLPVDVPESITAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G Y +R+ + +N D Sbjct: 298 --DGVPLMECSYGVFNGKYALRVQNMLNQDD 326 >gi|172059107|ref|YP_001806759.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6] gi|171991624|gb|ACB62543.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6] Length = 332 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|115350088|ref|YP_771927.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD] gi|115280076|gb|ABI85593.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD] Length = 332 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|161523223|ref|YP_001578235.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|189348920|ref|YP_001944548.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|221201776|ref|ZP_03574813.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2M] gi|221207719|ref|ZP_03580727.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2] gi|221214537|ref|ZP_03587507.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1] gi|160340652|gb|ABX13738.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|189332942|dbj|BAG42012.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221165427|gb|EED97903.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1] gi|221172565|gb|EEE05004.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2] gi|221178196|gb|EEE10606.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2M] Length = 332 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEIPTTFEKILNLRAGDVLPLDIADTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|83720285|ref|YP_440587.1| flagellar motor switch protein FliM [Burkholderia thailandensis E264] gi|167579274|ref|ZP_02372148.1| flagellar motor switch protein FliM [Burkholderia thailandensis TXDOH] gi|167617380|ref|ZP_02386011.1| flagellar motor switch protein FliM [Burkholderia thailandensis Bt4] gi|83654110|gb|ABC38173.1| flagellar motor switch protein FliM [Burkholderia thailandensis E264] Length = 332 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLDIADSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum] Length = 338 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 17/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + V+ S + KF + + L S N + Sbjct: 60 ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +V L++++ G S ++ R S +E ++++ + + + Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPV------ 173 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 I Y++ N E V T+ + I+ + + IP T ++ Sbjct: 174 --HPMPITYIRSEINPQFAAIVAPTEMVVTMAYRLEIDGQGRTIYICIPYST-IEPIKEK 230 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ I+ + + + I+ I + TL+D++ K G V Sbjct: 231 LYTGFQSDQYEVDSRWINRLQERVEEAPLEIEAFIGETRFTLRDILGWKTGDVFSLDRYV 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G + G + IRI R+ Sbjct: 291 SEPVEVRVEGIVRFLARPGIFRHHRAIRIERRVPPP 326 >gi|238025700|ref|YP_002909931.1| flagellar motor switch protein FliM [Burkholderia glumae BGR1] gi|237874894|gb|ACR27227.1| Flagellar motor switch protein FliM [Burkholderia glumae BGR1] Length = 332 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E ++ R + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEMRIISRLLHLVFEHYSVAWKSVRPLQFEH 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L++G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTANLTEMPSTFEKILNLRVGDVLPIDVEESIIAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVNRMISASDTM 326 >gi|170698080|ref|ZP_02889161.1| flagellar motor switch protein FliM [Burkholderia ambifaria IOP40-10] gi|170137041|gb|EDT05288.1| flagellar motor switch protein FliM [Burkholderia ambifaria IOP40-10] Length = 332 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|171316890|ref|ZP_02906099.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5] gi|171097971|gb|EDT42789.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5] Length = 332 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] Length = 331 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 5/272 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS Q ++S + F+ ++ N I C Sbjct: 59 ERFARNLRISLFNFIRRSPEISVGPVQVQRYSAFLRELAVPTSFNIMAVRPLRGNGMIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ +++ L G + ++ R S E+++ R + IS + Sbjct: 119 EPSLIFGVIDTLYGGIGKFQSRIEGRDFSATEQRIINRLVDVISDEYKKAWRGIYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + + I ++ + IP TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIRDVLYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S ++ R+ +V + + TT+++++ +K+G I + + A +S Sbjct: 237 DSMEVDRRWVNVLTREIQAADVTLVAELARANTTVEELLAMKVGDFIELERQPRIEATIS 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G ++ C+ G Y IRI + + S Sbjct: 297 --GVPVFECQYGTHNAKYAIRIERSLRGNDTS 326 >gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] Length = 330 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 90/263 (34%), Gaps = 7/263 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + VDIS S ++ K+S S + S+ Sbjct: 64 RFANSLQIGLYNFLRRGVDISAGSIKTIKYSEFTRSLVVPANINLVSMKPLRGTALFTID 123 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NL+ +++N+ G ++ R + E+ + +R + + + + Sbjct: 124 PNLIFLIVDNMFGGDGRFHTRVEGREFTLTEQGIIRRLLDVLFEHYEKAWQSVYPVKFEY 183 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQN 218 +++ N ++ V + + F IP T+L+ L S Q Sbjct: 184 IR-AEMNPQFANIVTPTD-IVVASAFELNLGGNRGEFYTCIPY-TMLEPIRDLLNNSMQE 240 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ I R+ + I + + TL ++ ++ G VI + AI Sbjct: 241 DRAEVDKNWIKSLTRQVQGAEIEIIANLGQTQVTLHQILNMQEGDVIALDIPDTVVAI-- 298 Query: 279 ANGKEIYSCELGRVGKNYTIRIT 301 AN I C G + +Y +++ Sbjct: 299 ANNVPIMDCHYGILNGHYALKVK 321 >gi|167585018|ref|ZP_02377406.1| flagellar motor switch protein FliM [Burkholderia ubonensis Bu] Length = 332 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 84/271 (30%), Gaps = 5/271 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKMLNLVFEHYTTAWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNK 219 NE V ++ + + +P + + S Q + Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYSMVEPIRDVLASPIQGE 237 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + +++ V + + T + ++ L+ G V+P + A + Sbjct: 238 ALEVDRRWVRVLSQQVQTAEVEVTANLAEIPVTFEQILNLRAGDVLPLAIEDTITAKV-- 295 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ + Sbjct: 296 DGVPVMECGYGIFNGQYALRVQKMISANDTM 326 >gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E ++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEMRIISKLLHMVFEHYTVAWKSVRPLQFEH 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L++G V+P Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEVPTTFERILNLRVGDVLPLDIG--DAVTAK 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I + Sbjct: 295 VDGVPVMECGYGIFNGQYALRVNRMIGASDTT 326 >gi|107021592|ref|YP_619919.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU 1054] gi|116688064|ref|YP_833687.1| flagellar motor switch protein FliM [Burkholderia cenocepacia HI2424] gi|170731414|ref|YP_001763361.1| flagellar motor switch protein FliM [Burkholderia cenocepacia MC0-3] gi|206561843|ref|YP_002232608.1| flagellar motor switch protein FliM [Burkholderia cenocepacia J2315] gi|254246641|ref|ZP_04939962.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184] gi|105891781|gb|ABF74946.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU 1054] gi|116646153|gb|ABK06794.1| flagellar motor switch protein FliM [Burkholderia cenocepacia HI2424] gi|124871417|gb|EAY63133.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184] gi|169814656|gb|ACA89239.1| flagellar motor switch protein FliM [Burkholderia cenocepacia MC0-3] gi|198037885|emb|CAR53829.1| flagellar motor switch protein FliM [Burkholderia cenocepacia J2315] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTANLAEISSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMIGASDSM 326 >gi|239817144|ref|YP_002946054.1| flagellar motor switch protein FliM [Variovorax paradoxus S110] gi|239803721|gb|ACS20788.1| flagellar motor switch protein FliM [Variovorax paradoxus S110] Length = 333 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M DIS ++ + + + Sbjct: 61 ERFARHLRSSLLNFMRRSPDISVGPVHIQQYGEFVRHLPVPANINMLHMKPLRGTALFVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++NL G+ ++ R + E+++ KR + S + Sbjct: 121 DPKLVFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLNLTLQCYADAWQPVFPLSFD 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L NE V + + V + IP + + + Sbjct: 181 YVRAEMHGKLANIV--APNEVVINTTLQIEFGPVGGFLHVCIPYSMIEPIRDLLSNPVQD 238 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + +++ +V + +T+ +V+ L++G V+P T Sbjct: 239 EIEVDKRWVRQMSQQMQSADVELSAEFITLPSTIGEVLKLQVGDVLPIELP--TSITARV 296 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ I+ Sbjct: 297 DGIPVMECGYGVSNERYALRVLQMISHQD 325 >gi|33592495|ref|NP_880139.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I] gi|33601558|ref|NP_889118.1| flagellar motor switch protein FliM [Bordetella bronchiseptica RB50] gi|33572141|emb|CAE41684.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I] gi|33575994|emb|CAE33074.1| flagellar motor switch protein FliM [Bordetella bronchiseptica RB50] gi|332381913|gb|AEE66760.1| flagellar motor switch protein FliM [Bordetella pertussis CS] Length = 336 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 6/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M + DI+ + + K++ + + + Sbjct: 60 ERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V ++ + +P + L Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + R+ ++++ +++ +++ +K G V+P E Sbjct: 238 TALEEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPE--TVTA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G + C G Y +R+ + IN+D Sbjct: 296 HVDGVPLMECGYGVFNGRYALRVQNLINYDDT 327 >gi|295678044|ref|YP_003606568.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002] gi|295437887|gb|ADG17057.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIITKLLNLTFEHYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGSTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EAMDVDRRWVRVLSQQVQAAEVQLTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|134294173|ref|YP_001117908.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4] gi|134137330|gb|ABO53073.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ L+ G V+P Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTADLAEIPATFEKILNLRAGDVLPLEI--DDTITAK 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 295 VDGVPVMECGYGIFNGQYALRVQKMISAGDTM 326 >gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] Length = 336 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 97/272 (35%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M + ++S + K++ + + + + Sbjct: 59 ERFARYLRIGLFNYMHRNAEVSVGPIKVQKYAEFVRNLVVPTNLNLVLGKPLRGTGLVVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ + + + + + Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIQGMLNVVFTEYAKAWAPV--FKLE 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 LE + +E V + + ++ + + + P +++ L S + Sbjct: 177 LEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYS-MVEPIRDLLYSTMQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ Q I +R+ V + + + TL+D+V +++G VIP E A + Sbjct: 236 SDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPLQVSELLQATV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G + C G + ++ + D+ Sbjct: 296 --DGVPVLECRYGTQNGQFAFKVDRFLGPDET 325 >gi|167560937|ref|ZP_02353853.1| flagellar motor switch protein FliM [Burkholderia oklahomensis EO147] gi|167568197|ref|ZP_02361071.1| flagellar motor switch protein FliM [Burkholderia oklahomensis C6786] Length = 332 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYSVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEIPTTFEKILNLRAGDVLPLDIAETLTAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ ++ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMVSASDTM 326 >gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301] gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301] Length = 334 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 93/270 (34%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + V++S + K+S + + + + + Sbjct: 58 ERFARLVRIELFNFLRRTVEVSVGPVRITKYSDFVRNLVVPTNLNLIQMKPLRGTALMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++N+ G ++ R + E+++ +R + + ++ Sbjct: 118 DPTLVFLVVDNMFGGDGRFHTRVEGRDFTQTEQRIIQRILNIVFETYSKSWEPVYPVQFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V + N+ + + P +L+ LSS + Sbjct: 178 YMR-SEMNTQFANI-ATPNEVVIAVTFNVELGPASGEIHFCFPYS-MLEPLRDMLSSPLQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++ V I + + DV+ +K+G V+P E A + Sbjct: 235 GEVLGTDKRWVKLMTQQVQAAEVEIVADLAKTNMMIGDVLNMKVGDVVPLNIEESIEAQV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C+ G Y +R+ + + Sbjct: 295 --DGVPVMLCKYGMFNGQYALRVEKLLRSN 322 >gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 333 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 5/247 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +++ + + K+S + F+ ++ + I C LV +++ L G + + Sbjct: 78 EVAVGTIKVQKYSAFLREIVVPTNFNIMAVRPLRGSGLIVCDPTLVFAVIDALFGGAGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E ++ R + ISA + + + + Sbjct: 138 HTRIEGRDFSPTELRVISRLVEVISAEYKKAWAGVYPVELEYQRSEMQPQFATI--AAPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V T + + I + + + IP TL S+ Q + + ++ Sbjct: 196 EIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQGDANEPDRRWVKLLTQQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + T++ ++ LK G I +G ++ C G Y Sbjct: 256 AEVDLVAELAQAPATVEQLLALKPGDFIELDL--DQVVHAKVDGVPVFDCHYGTSNGKYA 313 Query: 298 IRITDRI 304 I+I + Sbjct: 314 IKIDQLL 320 >gi|296135698|ref|YP_003642940.1| flagellar motor switch protein FliM [Thiomonas intermedia K12] gi|294339869|emb|CAZ88232.1| Flagellar motor switch [Thiomonas sp. 3As] gi|295795820|gb|ADG30610.1| flagellar motor switch protein FliM [Thiomonas intermedia K12] Length = 336 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 104/298 (34%), Gaps = 13/298 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ G T+E I+ L++ L + +IS +S + K++ Sbjct: 37 PYDLASQDRIVR--GRMPTLEVINERFARLWRVSLFNFLRRAS----EISVSSVKLTKYN 90 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 I + + L+ ++++N G ++ R + +E Sbjct: 91 EFIRGLVVPSNLNLVQMKPLRGTALFIFDPRLIFSVIDNFFGGDGRFHARIEGRDFTPLE 150 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ KR + + + P L + E V ++ IE Sbjct: 151 QRIIKRMLDMVFKEYKTAWAPVLPLEPELTRSEV--NPQFVNIATPTEVVIVSTFDVEIE 208 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLK 249 S + IP +++ L++ ++ D + + + V + + + Sbjct: 209 GGGGSLHVCIPYS-MVEPIRDQLTTGMTTDRSEVDHRWVKALQTEMREAEVEMRVELLQR 267 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + +++++ L++G V+P E I +G + E GR ++I ++ + Sbjct: 268 QILVRELLNLRVGDVLPVDMPE--TVIARVDGIPVLLGEYGRHEDKMALKIRQQLFPE 323 >gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi str. 1704B] Length = 222 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 20/234 (8%) Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 + A + LV L++N G ++ R + E ++ + + Q Sbjct: 1 SLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQ 59 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVAS 195 L + E + +Y+ N +E V ++ ++ Sbjct: 60 AFVDLKEAWQAIMEV--------NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGG 111 Query: 196 SFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + +P +++ L + +S ++Q E ++ +NV + T I ++ L Sbjct: 112 DLHVTMPYS-MIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPL 170 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +D++ ++ G VIP + ++ ANG + +LG +++ + I Sbjct: 171 RDILHMRPGDVIPVELSDS--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 222 >gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 105/293 (35%), Gaps = 11/293 (3%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKE 79 L ++ I + + + L ++++ + +IS + K+S I S Sbjct: 40 DLANQDRIVRGRMPTLEVVNERLARLWRVSLFNFLRRSAEISVGPVRLVKYSEFIRSLMV 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + L+ +++N G ++ R + +E+++ KR + Sbjct: 100 PSNINIVQVKPLRGSALFVFDARLIFAVVDNYFGGDGRFHARIEGREFTPLEQRIIKRLL 159 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + S + P L + + E V N+ +E+ SF + Sbjct: 160 DLVFKDFKSAWSPVIDLQPELSRSEV--NPQFVSIATPTEVVIVSTFNIELESGTGSFQI 217 Query: 200 IIPQETLLKTTLISLSSQNKSENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +++ L++ ++ + + + + + + +++ ++ Sbjct: 218 CLPYG-MVEPVRDQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFARLPISVRQLL 276 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L++G VIP E + +G ++ G G Y I+ + + + +S Sbjct: 277 ALRVGDVIPLERPE--TLVARVDGIPVFRGPYGVHGGKYAIQFHEALPPETES 327 >gi|293607830|ref|ZP_06690150.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC 43553] gi|292813773|gb|EFF72934.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M DI+ S + K++ + + + Sbjct: 60 ERFARHMRNVLLNFMRRSADITVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L + Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + +R+ ++++ +++++++ LK+G V+P E I Sbjct: 238 TTLEEVDQRWSQQLSRQVRSADIDVVAEFARIPSSIRELMHLKVGDVLPVDVPE--TIIA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + +G + C G Y +R+ + +D S Sbjct: 296 NVDGVPLMECGYGVFNGQYALRVQNMFTYDTDS 328 >gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] Length = 334 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 88/251 (35%), Gaps = 5/251 (1%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + KFS + F+ S+ + I C N+V +++ L G + + Sbjct: 78 EVSIGGIKVQKFSAFLREIVVPTNFNLVSVKPLRGSGLIVCDPNVVFAVIDALFGGAGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E ++ R + I A + + ++ N + Sbjct: 138 HTRIEGRDFSPTELRVILRLVECIIAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I + + + IP TL + S+ Q S ++ + Sbjct: 196 EIVVSTAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQGDSAEPDRRWVNLLKHQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + T++ +++ K G I A + +G ++ C G Y Sbjct: 256 AEVDLVAELGHAPATVEQLLSFKPGDFIELDLDPMIQAKV--DGVPVFDCHYGTTNGRYA 313 Query: 298 IRITDRINFDQ 308 I+I + Sbjct: 314 IKIDRLLTSSN 324 >gi|254292908|ref|YP_003058931.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814] gi|254041439|gb|ACT58234.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814] Length = 376 Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 101/267 (37%), Gaps = 6/267 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V++S S S +F ++S + S + + Sbjct: 100 RLVRLLTTSLRNFTSDNVEVSLDSIASMRFGDYLNSIPLPAILSVFRARQLDNYGLVTVD 159 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L R + I A + + E + Sbjct: 160 SNLIYSIVDVLLGGRRGTAAMRVEGRPYTTIERMLVTRLVEVILADAKKAFNPLTEVDFD 219 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 220 LDRIETNPRFAAIAQPANAA--ILVRLRVDMEDRGGRCELMLPYATLEPIRKMLLQNFMG 277 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K N A + + N+ ++ + L +++L++G + + + L Sbjct: 278 EKFGN-DNIWEGHLATEIWTAPTNVRVVMDEFEQPLGRMMSLEVGDTLLMTAGQNSKVSL 336 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 + ++GR+GK +R+ + Sbjct: 337 RCGDIYLTEGQIGRIGKKVAVRVDAPL 363 >gi|187925747|ref|YP_001897389.1| flagellar motor switch protein FliM [Burkholderia phytofirmans PsJN] gi|187716941|gb|ACD18165.1| flagellar motor switch protein FliM [Burkholderia phytofirmans PsJN] Length = 332 Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ + Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAAETM 326 >gi|253996306|ref|YP_003048370.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8] gi|253982985|gb|ACT47843.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8] Length = 334 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 90/270 (33%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + V++S + K+S I + + + + Sbjct: 58 ERFARLVRIELFNFLRRTVEVSVGPVRITKYSDFIRNLVVPTNLNLVQMKPLRGTALMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++N+ G ++ R + E+++ +R +A + + Sbjct: 118 DPTLVFLVVDNMFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFETYAKSWEPVYPIEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V N+ + + +P +++ L+S + Sbjct: 178 YLR-SEMNTQFANI-ATPNEVVVVTTFNVELGPASGEIHFCMPYS-MVEPIRDLLTSPLQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++ + I + + L V+ +K+G VIP Sbjct: 235 GEVLGADKRWVKLMTQQVQAAEIEIVADLATTEMHLGKVLNMKVGDVIPISM--DDAIEA 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C+ G Y +R+ + + Sbjct: 293 KVDGVPVMLCKYGLFNGQYALRVEKLLRSN 322 >gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] Length = 335 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M DI+ S + K++ + + + Sbjct: 60 ERFARQMRHVLLNFMRRSADITVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L + Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + +R+ ++++ +++++++ LK+G V+P E + Sbjct: 238 TTLEEVDQRWAQQLSRQVRSADIDVVAEFARIPSSIRELMRLKVGDVLPVTVPE--TIVA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 S +G + C G Y +R+ + D +S Sbjct: 296 SVDGVPLMECGYGVFNGQYALRVQNMFTHDTES 328 >gi|308273526|emb|CBX30128.1| hypothetical protein N47_D29370 [uncultured Desulfobacterium sp.] Length = 322 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 5/267 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + FL + + L D+S S KF S + + + Sbjct: 59 ERFINFLNESLPGTIGLSTDVSVDEIDSIKFGDFCRSLPVPTSLNIFKMEPLKGFALLVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++ + G + +L R + +E+K+ R + + L + + ++ Sbjct: 119 EGWLVFAFVDAMFGGKGVSHVKLEGRGFTAIEQKIVSRIVDIVLVDLQKAWAEIKDLKMV 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++D + ++ + T + I N + +P + +++ L + Sbjct: 179 YTR-SEMDPQFAGIAKPTDMIIAT-KFALNIGNFTGGMTICLPYD-VIEPIGEKLKENYR 235 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 SE D +K +L++N+ + K T ++ + +K+ V+ + ++ Sbjct: 236 SEKFEADPVWKQHIKKKIQELDINLKCTLGRIKITGREFLEMKVDDVLLTGQKVDDPIVV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 S + +G + IRI D+I Sbjct: 296 SVGDLNKFKGHVGSMNNKKAIRIADKI 322 >gi|91785619|ref|YP_560825.1| flagellar motor switch protein FliM [Burkholderia xenovorans LB400] gi|296157439|ref|ZP_06840274.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1] gi|91689573|gb|ABE32773.1| Flagellar motor switch protein FliM [Burkholderia xenovorans LB400] gi|295892211|gb|EFG71994.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1] Length = 332 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAKVPVTFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|317406219|gb|EFV86466.1| flagellar motor switch protein [Achromobacter xylosoxidans C54] Length = 335 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 41/315 (13%), Positives = 105/315 (33%), Gaps = 10/315 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSL---GYLYKKFLPKIFKEKMDLD 57 + G+S K S P AR + + + +L + + + + M Sbjct: 19 VTGESDSKKESAG-PNDGARAYDLSSPDRVVRRRMQTLELINERFARQMRSVLLNFMRRS 77 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 DI+ S + K++ + + + NLV ++++L G Sbjct: 78 ADITVGSIKIQKYADFERNLPVPSNLNMVQMKPLRGTALFTYDPNLVFLVIDSLFGGDGR 137 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ R +T E+++ +R + + + T + Sbjct: 138 YHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHTKFASITG--N 195 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQNKSENQSEDLIDPFARKT 235 NE V + ++ + +P + L + E + +R+ Sbjct: 196 NEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQV 255 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++++ +++++++ +K+G ++P + I +G + C G Sbjct: 256 RSADIDVVAEFARIPSSIRELMRMKVGDILPVDVPQ--TVIAHVDGVPLMECGYGVFNGQ 313 Query: 296 YTIRITDRINFDQKS 310 Y +R+ + D +S Sbjct: 314 YALRVQNMFTHDTES 328 >gi|307731349|ref|YP_003908573.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003] gi|307585884|gb|ADN59282.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003] Length = 332 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIISKLLNLVFEHYAASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 MRSEMHTQFA--NVATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E+ A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTADLAQVPITFEQILNMRKGDVLPINIPEQITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISAADTM 326 >gi|170694407|ref|ZP_02885561.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M] gi|170140830|gb|EDT09004.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M] Length = 332 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 MRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPITFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] Length = 334 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 5/245 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ + + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G I+ C+ G Y Sbjct: 256 AEVTLVAELAQADATVEQLLAMKPGDFIELDREPRIRA--SIGGVPIFECQYGTHNSKYA 313 Query: 298 IRITD 302 IRI + Sbjct: 314 IRIEE 318 >gi|300680950|sp|P0CG26|FLIM_CAUCR RecName: Full=Flagellar motor switch protein FliM gi|144253|gb|AAA62449.1| FliM [Caulobacter crescentus CB15] Length = 373 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 43/323 (13%), Positives = 114/323 (35%), Gaps = 20/323 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54 N + +L L+G D +T + + + + LP + Sbjct: 53 NQDEIDSLLGFDLSGDGSDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 112 Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 +V++S + S +F ++S + + + + +NL+ ++++ LLG Sbjct: 113 SDNVEVSLDNISSIRFGDYLNSIPLPGILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 172 Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T ++ R +T+E+ L +R I + L S +L+ Sbjct: 173 RRGTAAMRIEGRPYTTIERVLVQRMIDVVLHDLKSAFEPLHPVSFSLDRLET--NPPFAA 230 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 + + + +E+ L++P TL ++ L+ K + Sbjct: 231 IARPANAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 289 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + + + + ++ ++ L V+ +++G + + + + +GR Sbjct: 290 ATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATSRQPGGAARRRIPLTRGRMGR 349 Query: 292 VGKNYTIRITDRINFDQKSLKNF 314 + +R ++ +K+++ Sbjct: 350 RNHSIAVRAEAPVDRRKKAVQKL 372 >gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] Length = 334 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 5/247 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + K+S + F+ S+ + I C LV ++++ L G S + Sbjct: 78 EVSVGGIKVQKYSAFLRETVVPTNFNIVSVRPLRGSGMIVCDPTLVFSVIDALFGGSGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I+ + + ++ N Sbjct: 138 HTRIEGRDFSPTEQRVISRIVEVIATEYKKAWQGIYPLELEYQR-SEMQPQFANI-AAPG 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V T + + I + + IP TL + SS Q S + + Sbjct: 196 EIVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQGDSAEPDRRWVKLMTHQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ LK G I + + +G + + G Y Sbjct: 256 AQVQLVAELAHAPATVEQLLALKAGDFIELDLIKSIEVKV--DGVPVMEAQYGTSNGKYA 313 Query: 298 IRITDRI 304 +++ + Sbjct: 314 LKVDRML 320 >gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 5/251 (1%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ + + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNSKYA 313 Query: 298 IRITDRINFDQ 308 IRI + + Sbjct: 314 IRIEECLRNPD 324 >gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] Length = 334 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 5/251 (1%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ + + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNSKYA 313 Query: 298 IRITDRINFDQ 308 IRI + + Sbjct: 314 IRIEECLRNPD 324 >gi|209522293|ref|ZP_03270920.1| flagellar motor switch protein FliM [Burkholderia sp. H160] gi|209497269|gb|EDZ97497.1| flagellar motor switch protein FliM [Burkholderia sp. H160] Length = 332 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGSTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + + +++ V + + T + ++ ++ G V+P E+ A + Sbjct: 237 EAMDVDRRWVRVLSQQVQAAEVQLTADLAQVPVTFEQILNMRKGDVLPINIPERITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|78064701|ref|YP_367470.1| flagellar motor switch protein FliM [Burkholderia sp. 383] gi|77965446|gb|ABB06826.1| Flagellar motor switch protein FliM [Burkholderia sp. 383] Length = 332 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + + + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTANLAEISSNFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAGDSM 326 >gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] Length = 334 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 87/245 (35%), Gaps = 5/245 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I + + ++ N + Sbjct: 138 QTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLELGYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPIFECQYGTHNDKYA 313 Query: 298 IRITD 302 IR+ + Sbjct: 314 IRVEN 318 >gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1] Length = 335 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 105/265 (39%), Gaps = 5/265 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L+ S + K II + + + S S W + LV + E G Sbjct: 73 TSLEFSTDVQSLDTLKSDKIIQTIGTDTLLIYFSSSLWGDDVIFVLDATLVDLITEAFFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 A+ + R S E K+++ ++ ++ T S + T Sbjct: 133 AAEPKLINRNGRPFSPTEYKISEYFGKLLANTMDGIFGTGDGSLLLFKQILKAQEFNAET 192 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + + + + ++ +++P+ + +++ ++ + D Sbjct: 193 FHQSQMF--SCTLGVKCNEIETNVNILMPRSCH-RPIQEAVTRALRAPAKHTDPLWAKRL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ + +V+I+ I TL ++ L++GQV+ L + K +Y C LG+ Sbjct: 250 KQEVSRAHVSIEAFIQQGSMTLDELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGK 309 Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316 +G N++IR+TD I+ +++ + +H Sbjct: 310 MGTNFSIRVTDPIDEEKEMIDELVH 334 >gi|251789181|ref|YP_003003902.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591] gi|247537802|gb|ACT06423.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591] Length = 338 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 61 ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ +R + + + + Sbjct: 121 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVRRMLKLALDAYSDAWNAIYKLDVE 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ N N+ V T ++ I + F + IP +++ L++ Sbjct: 181 YVR-SEMQVKFTNITTSPNDIVVTTPFHLEIGTLTGEFSICIPFS-MIEPLRELLANPPL 238 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +Q ED + A++ + + L V+ LK G ++P E + Sbjct: 239 ENSQQEDQHWRETLAKQVQHSELELVANFVDIPVRLSKVLKLKPGDILPIDKPE--RLVA 296 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + +C+ G + Y +R+ IN SL + Sbjct: 297 HVDGVPVLTCQYGTLDGQYALRVEHLINPILNSLND 332 >gi|323527699|ref|YP_004229852.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001] gi|323384701|gb|ADX56792.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001] Length = 332 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 MRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E+ A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPITFEQILNMRKGDVLPINIPEQITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 216 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 20/228 (8%) Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + LV L++N G ++ R + E ++ + + Q L Sbjct: 1 IKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLK 59 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLII 201 + E + +Y+ N +E V ++ ++ + + Sbjct: 60 EAWQAIMEV--------NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTM 111 Query: 202 PQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P +++ L + +S ++Q E ++ +NV + T I ++ L+D++ + Sbjct: 112 PYS-MIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHM 170 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G VIP + ++ ANG + +LG +++ + I Sbjct: 171 RPGDVIPVELSDS--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 216 >gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H] gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H] Length = 343 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 102/277 (36%), Gaps = 12/277 (4%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L + +V+ S S +F + + +F+ W + + S Sbjct: 61 RFTRILTTSLRNFTSDNVEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLS 120 Query: 101 NNLVITLLENLLGA--SHETIPQLY-----NRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 ++L+ ++++ LLG ++ R + +E+ L + + I L S Sbjct: 121 SSLIYSIVDALLGGHVRGDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFSPL 180 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + + E +++ R N V T + +E +++P T L+ Sbjct: 181 CAVNFHFERL-EMNSRFAMICRAGNG-VVTARFGIDMEGRGGDVDIVLPHAT-LEPVRDI 237 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L Q E D + AR+ +Q ++ +D + + LKD++ L G + + Sbjct: 238 LLQQFMGEKFGHDGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKP 297 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L +++ +GR ++I D +N Sbjct: 298 DASVSLRCGEHVLFTGRVGRKQGQVAVKIEDVLNQKP 334 >gi|332284035|ref|YP_004415946.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7] gi|330427988|gb|AEC19322.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7] Length = 330 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 91/275 (33%), Gaps = 8/275 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + M + DI+ S + K+S + + ++ Sbjct: 60 ERFARRLRSVLLSFMRRNADITVGSIRIQKYSDFERNLPVPSNLNMVTMKPLRGAALFTF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + Sbjct: 120 DPNLVFLVIDSLFGGHGRYSTRVEGRDFTTTEQRIIRRLLNLTLESYGGAWEQVYPVQFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 T+ NE V + N+ + + + +P +++ L+ + Sbjct: 180 YIRSEMHTKFASITS--GNEIVVVTSFNIELGASGGNLNICLPYS-MIEPVRDLLTRPLQ 236 Query: 220 SENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 N + R+ +V + ++++ +++ L++ ++P A Sbjct: 237 EANAGAIDQRWTHQLTRQVRSADVELVAEFARIESSIGELMRLEVNDILPLEITPAINAH 296 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + G + C G Y +R+ + + + Sbjct: 297 V--GGVPVMECTYGTFNGRYALRVKKVLASSETDI 329 >gi|307131596|ref|YP_003883612.1| flagellar motor switch protein fliM [Dickeya dadantii 3937] gi|306529125|gb|ADM99055.1| Flagellar motor switch protein fliM [Dickeya dadantii 3937] Length = 338 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 107/307 (34%), Gaps = 12/307 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 36 DVKPYDPNTQRRVIRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIKIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + + + ++ N N+ V T ++ Sbjct: 150 HTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHL 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I + F + IP +++ L++ +Q ED + A++ + + Sbjct: 209 EIGTLTGEFSICIPFS-MIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELVANF 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+ LK G ++P E + +G + +C+ G + Y +R+ IN Sbjct: 268 VDIPVRLSKVLKLKPGDILPIDKPE--RLVAHVDGVPVLTCQYGTLDGQYALRVEHLINP 325 Query: 307 DQKSLKN 313 SL + Sbjct: 326 ILNSLND 332 >gi|271500079|ref|YP_003333104.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586] gi|270343634|gb|ACZ76399.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586] Length = 338 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 107/307 (34%), Gaps = 12/307 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 36 DVKPYDPNTQRRVIRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIKIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + + + ++ N N+ V T ++ Sbjct: 150 HTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHL 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I + F + IP +++ L++ +Q ED + A++ + + Sbjct: 209 EIGTLTGEFSICIPFS-MIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELVANF 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+ LK G ++P E + +G + +C+ G + Y +R+ IN Sbjct: 268 VDIPVRLSKVLKLKPGDILPIDKPE--RLVAHVDGVPVLTCQYGTLDGQYALRVEHLINP 325 Query: 307 DQKSLKN 313 SL + Sbjct: 326 ILNSLND 332 >gi|110805914|ref|YP_689434.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401] gi|110615462|gb|ABF04129.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401] Length = 349 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I NG + + + G + Y +RI Sbjct: 278 ANFADISLHLSQILKLKPGDVLPIEKP--DRIIAHVNGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 12/280 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + I+ + + L + V+I S ++ + S N F+ SL Sbjct: 57 RAIKNLHDKFSRNFSSKLSAFLRSI----VEIEVVSVDQMTYAEFVLSLSNNVSFNVVSL 112 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N ++ L++ LLG E+ NR + +E+ + + Q + Sbjct: 113 SPLDGNAVFSLEPDIGFALIDRLLGGIGES--SNINRPFTDIEQSILLDVVRQAMEEMRS 170 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + S + + + +E V + + + +P +L+ Sbjct: 171 SWEPIIDISFEVVGQESSPNVVQIV--APSEIVVLVVFEVKLGETTGIINWCLPV-IVLE 227 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L + + + +S+ +ED I+ AR ++ V ++ R+ ++D ++LK G ++ Sbjct: 228 PVLNKIGTHDILARSKKATEDRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLL 287 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + NG E Y +LGR G N ++I I Sbjct: 288 TLDKKVDDELPVFINGVEKYGVKLGRKGYNKAVKINRIIG 327 >gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] Length = 329 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 95/270 (35%), Gaps = 5/270 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS ++S + F+ ++ + I C Sbjct: 59 ERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPTNFNIVAIRPLRGSGMIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++ L G + ++ R S E+++ R + I+ + Sbjct: 119 EPSLVFGVIDTLYGGIGKFQARIEGRDFSATEQRVINRLVDVITEEYKKAWKGVYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + + I +A S +P TL I SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVISTSFQLEIGEIAGSIHFCMPYATLEPIRDILYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S + ++ ++ + + + T++ ++ +K G I + ++ Sbjct: 237 DSIEVDKRWVNVLTQEIQAAEITLVAELARADATVEQLLAMKTGDFIELDRP--SRIEVT 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G ++ C+ G Y IRI + + Sbjct: 295 VEGVPVFECQYGTHNAKYAIRIDKSLRGND 324 >gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY] gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY] Length = 334 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 90/245 (36%), Gaps = 5/245 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSATEQRVINRLVDVICAEYKKAWQGIYPLELAYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I ++A + + +P TL + SS Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDLAGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELEREPRIRA--SIEGVPVFECQYGTHNSKYA 313 Query: 298 IRITD 302 IRI + Sbjct: 314 IRIEE 318 >gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 96/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS ++S + F+ ++ + + C Sbjct: 59 ERFARNLRIGLFNFIRRSPEISVGMVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++ L G + + ++ R S E+++ R + I A + Sbjct: 119 EPSLVFGIIDTLYGGAGKFQTRIEGRDFSPTEQRVINRLVDVICAEYKKAWQGIYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + I ++ + + +P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLPGAIHMCMPYATLEPIRDVLYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S + R+ V + + T++ ++ LK G I + + A Sbjct: 237 DSIEVDRRWVRVLTREIQAAEVVLVAELARADATVEQLLALKPGDFIELERQPRIRAA-- 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKN 313 G I+ C+ G Y IRI + N D L Sbjct: 295 IGGVPIFECQYGTHNCRYAIRIEKCLRNADPSWLGE 330 >gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] Length = 331 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L F ++ V I+ +S +S I S + I Sbjct: 60 ENFSRQLITFFSTQLRTLVQINASSVDQMPYSEFISSIPNPSIIGIVDFQPLRGAIIIAM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + ++ ++++ LLG S E + R + +E + R +++ ++ + E P Sbjct: 120 NVSMAFSIIDRLLGGSGEY--KDKPREPTEIEANILHRVYSKLVKLMQEAWQDILEIHPV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + NE V I +N I + IP +++ + LS++ Sbjct: 178 FDKLET--NPQFVQLVSPNEAVALITINTRIGKTDGLINICIPY-IVIEPVMSRLSTKIW 234 Query: 220 SENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 N ++ + F + + +N I I K T+++ + L +G VI + Sbjct: 235 LSNSKKESPESFIKTITRKLENVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEV 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + K Y +G+ + +RI I+ + Sbjct: 295 DVYVYDKLKYKGIMGKRNGRFAVRINKVISERDE 328 >gi|261821166|ref|YP_003259272.1| flagellar motor switch protein FliM [Pectobacterium wasabiae WPP163] gi|261605179|gb|ACX87665.1| flagellar motor switch protein FliM [Pectobacterium wasabiae WPP163] Length = 337 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 106/311 (34%), Gaps = 12/311 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P P R+ + + +E I+ ++ L + + DI+ Sbjct: 31 KTDGDVKPYDPNTQRRVIRER--LQALEIINERFARQFRMALFNLLR----RSPDITVGG 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L S +LV ++NL G ++ Sbjct: 85 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 144 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + + + + ++ N N+ V T Sbjct: 145 REFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVR-SEMQVKFTNITTSPNDIVVTT 203 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ I ++ F + IP +++ L+ S + + D A++ + + Sbjct: 204 PFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELEL 262 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L ++ L+ G V+P EK A + +G + + + G + Y +R+ Sbjct: 263 VANFVDIPLRLSKILKLQPGDVLPIDKPEKIVAHV--DGVPVLTSQYGTLNGQYALRVEH 320 Query: 303 RINFDQKSLKN 313 IN SL N Sbjct: 321 LINPILNSLDN 331 >gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] Length = 334 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 5/248 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R ST E+++ R + I + + ++ N + Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + SS Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313 Query: 298 IRITDRIN 305 IR+ + Sbjct: 314 IRVERSLR 321 >gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] Length = 334 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 5/248 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R ST E+++ R + I + + ++ N + Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + SS Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313 Query: 298 IRITDRIN 305 IR+ + Sbjct: 314 IRVERSLR 321 >gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1] Length = 326 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N I Sbjct: 60 RFARLCTNALSNAVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G S + P++ R + +E+ + R I + + + L Sbjct: 120 SRLVFALVENFFGGSG-SQPKIEGREFTRIEQAIVDRVIHIALDNMEESWRPVHDVHLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + +++ S V+ +P T ++ L + ++ Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDSAIGSMVICLPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + V + R K T ++ L++G V+ ++ Sbjct: 236 ERLEVDHAWVARLKERLMETPVELKVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G V N +I Sbjct: 296 IAGVTKFWGLGGTVKANKAFQI 317 >gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] Length = 325 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VD++ S KF + S + + N + Sbjct: 60 RFSRLCTSALANTMRKRVDVNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALLVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 LV +L+EN G + + P++ R + +E+ + + + I A L E S L Sbjct: 120 TRLVFSLVENFFGGAG-SQPKIEGRDFTPIEQSIIVKVVKIILANLEDAWRPVHEVSIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I+ + +EN S VL +P T ++ L + ++ Sbjct: 179 LRSEINPQFATIV--PPSDVVVVISFEVELENALGSMVLALPYAT-IEPIRSKLYAAFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I F + + V+++ + T + ++ +K+G ++ E Sbjct: 236 ERLEIDHAWISRFRDRLMETPVDMNVTFGTTQITGRQLLDMKVGDILMLDQDEDDMLSGR 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 +G + G V N +I Sbjct: 296 IHGILKFFGLPGFVKGNKAFKI 317 >gi|33596151|ref|NP_883794.1| flagellar motor switch protein FliM [Bordetella parapertussis 12822] gi|33573154|emb|CAE36805.1| flagellar motor switch protein FliM [Bordetella parapertussis] Length = 336 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 84/272 (30%), Gaps = 6/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M + DI+ + + K++ + + + Sbjct: 60 ERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V ++ + +P + L Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++++ +++ +++ +K G V+P E Sbjct: 238 TALEEVDQRWAQQLQSQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPE--TVTA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G + G Y +R+ + IN+D Sbjct: 296 HVDGVPLMEYGYGVFNGRYALRVQNLINYDDT 327 >gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 350 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 108/313 (34%), Gaps = 9/313 (2%) Query: 1 MRGQSIHKNTSPLHPILLARL--TGKLGDKKTIEKISSSL---GYLYKKFLPKIFKEKMD 55 ++G S +++SP P R+ + I + +L + ++ + Sbjct: 16 LKGVSGEEDSSPSEPADTQRIRPYNPATQHRVIRERLHALDIINERFARYFRMSLFNLIR 75 Query: 56 LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS 115 DI+ S + +S + + ++ + +LV +++NL G Sbjct: 76 RSADITVDSVRYQSYSDFARNVPVPTNINLLAMKPLRGTALVVFPPSLVFMVVDNLFGGD 135 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + + R + E+++ +R + + + ++ N Sbjct: 136 GRFLTKSEGREFTHTEQRIIRRLLGLALEAYQSAWKSVYPLEIDYLR-SEMQAKFANITS 194 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARK 234 NE V ++ + N+AS F +++P + + N S ++ A + Sbjct: 195 SPNEIVINSTFHLEVGNLASDFNIVMPYLMIEPLRSLLNGPLNDSHPDEERQWGKRMASE 254 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Q + + + V+ LK+G V+P E + +G + CE G Sbjct: 255 IKQSQIELIADFAGIDLCIGQVMALKVGDVLPIELPE--TVVARVDGVPVMRCEYGSRNG 312 Query: 295 NYTIRITDRINFD 307 +++ + I+ Sbjct: 313 QRALQVKELIDHS 325 >gi|322833203|ref|YP_004213230.1| flagellar motor switch protein FliM [Rahnella sp. Y9602] gi|321168404|gb|ADW74103.1| flagellar motor switch protein FliM [Rahnella sp. Y9602] Length = 340 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 97/304 (31%), Gaps = 12/304 (3%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + I + + + + DI+ + + + Sbjct: 42 PFDPTTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGAIKIQPYH 95 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + +LV ++NL G ++ R + E Sbjct: 96 DFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 155 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ KR + S + S ++ N N+ V T ++ I Sbjct: 156 QRVIKRMLRLALDAYEDAWSGVYKLSVEYVR-AELQIKFTNITSSPNDIVVTTPFHVEIG 214 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 ++ F + IP +++ L+ S N+ + + Q + + Sbjct: 215 ALSGDFNICIPFS-MIEPLRELLTNPPVENSRNEESQWRENLVHQVQQSELELVANFVEI 273 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L ++ LK G V+P I +G + + + G + + Y +R+ IN Sbjct: 274 PLRLSQILKLKPGDVLPIEKP--DRLIAHVDGVPVLTSQYGTLNEQYALRVEHLINPILN 331 Query: 310 SLKN 313 SL Sbjct: 332 SLDE 335 >gi|156933435|ref|YP_001437351.1| flagellar motor switch protein FliM [Cronobacter sakazakii ATCC BAA-894] gi|156531689|gb|ABU76515.1| hypothetical protein ESA_01253 [Cronobacter sakazakii ATCC BAA-894] Length = 334 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 33 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 147 HTEQRVINRMLKLALEAYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S + ++ D R+ + + Sbjct: 206 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQNWRDTLVRQVQHSELELIANFA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P ++ + +G + + + G V Y +R+ IN Sbjct: 266 EIPLRLSKILKLKPGDVLPIDKPDRILVHV--DGVPVLTSQYGTVNGQYALRVEHLINP 322 >gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] Length = 334 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +IS + +++ + F+ ++ + I C Sbjct: 59 ERFARNFRIGLFNMIRRSPEISVGTVGVQRYNAFLRELVVPTNFNIVAIRPLRGSGLIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ +++ L G + ++ R S E ++ +R + I + + Sbjct: 119 EPSLLFGIIDTLYGGVGKLQTRIEGRDFSATELRVIQRLVNLICEEYKKAWQGIYPLELS 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + I +++ + + +P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSVQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + R+ V + + T++ ++ +K G I + A S Sbjct: 237 DAIEVDRRWVKVLTREIQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIRA--S 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302 G ++ C+ G Y IRI Sbjct: 295 IEGVPVFECQYGTHNAKYAIRIEQ 318 >gi|50120652|ref|YP_049819.1| flagellar motor switch protein FliM [Pectobacterium atrosepticum SCRI1043] gi|49611178|emb|CAG74624.1| flagellar motor switch protein [Pectobacterium atrosepticum SCRI1043] Length = 337 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + L Sbjct: 60 ERFARQFRMSLFNLLRRSPDITVGGIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. 8004] gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 337 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 25/273 (9%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQE-TLLKTTLI 212 D +Y+ N E+V ++ +E P +L Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGRR----DPHHPAVLDAGAD 226 Query: 213 SLSSQN--KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 +++ +S+ D + V + + + K+ +L+ + LKIG ++P Sbjct: 227 PRTARRRHQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPID 286 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 287 LPA--QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|26248214|ref|NP_754254.1| flagellar motor switch protein FliM [Escherichia coli CFT073] gi|91211163|ref|YP_541149.1| flagellar motor switch protein FliM [Escherichia coli UTI89] gi|110642051|ref|YP_669781.1| flagellar motor switch protein FliM [Escherichia coli 536] gi|117624085|ref|YP_852998.1| flagellar motor switch protein FliM [Escherichia coli APEC O1] gi|237705904|ref|ZP_04536385.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA] gi|331642566|ref|ZP_08343701.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|331647539|ref|ZP_08348631.1| flagellar motor switch protein FliM [Escherichia coli M605] gi|331653357|ref|ZP_08354362.1| flagellar motor switch protein FliM [Escherichia coli M718] gi|331673458|ref|ZP_08374226.1| flagellar motor switch protein FliM [Escherichia coli TA280] gi|331677827|ref|ZP_08378502.1| flagellar motor switch protein FliM [Escherichia coli H591] gi|332278888|ref|ZP_08391301.1| flagellar motor switch protein FliM [Shigella sp. D9] gi|26108618|gb|AAN80821.1|AE016762_74 Flagellar motor switch protein fliM [Escherichia coli CFT073] gi|91072737|gb|ABE07618.1| flagellar motor switch protein FliM [Escherichia coli UTI89] gi|110343643|gb|ABG69880.1| flagellar motor switch protein FliM [Escherichia coli 536] gi|115513209|gb|ABJ01284.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|226900661|gb|EEH86920.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA] gi|331039364|gb|EGI11584.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|331043263|gb|EGI15401.1| flagellar motor switch protein FliM [Escherichia coli M605] gi|331049455|gb|EGI21527.1| flagellar motor switch protein FliM [Escherichia coli M718] gi|331069656|gb|EGI41043.1| flagellar motor switch protein FliM [Escherichia coli TA280] gi|331074287|gb|EGI45607.1| flagellar motor switch protein FliM [Escherichia coli H591] gi|332101240|gb|EGJ04586.1| flagellar motor switch protein FliM [Shigella sp. D9] Length = 349 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 336 INPILNSLNEEQPK 349 >gi|237731993|ref|ZP_04562474.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2] gi|226907532|gb|EEH93450.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2] Length = 349 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 10/318 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + +E I+ ++ L + + DI Sbjct: 41 ISGIAKESDIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDI 94 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S +LV ++NL G Sbjct: 95 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 154 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + ++ N N+ Sbjct: 155 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 213 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + L+ S N+ ++ + R+ Sbjct: 214 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 273 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G V Y +R Sbjct: 274 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 331 Query: 300 ITDRINFDQKSLKNFLHK 317 + IN SL K Sbjct: 332 VEHLINPILNSLNEEQPK 349 >gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans BC] gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans BC] Length = 334 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +IS + +++ + F+ ++ + I C Sbjct: 59 ERFARNFRIGLFNMIRRSPEISVGTVAVQRYNAFLRELVVPTNFNIVAIRPLRGSGLIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ +++ L G + ++ R S E ++ +R + I + + Sbjct: 119 EPSLLFGIIDTLYGGVGKLQTRIEGRDFSATELRVIQRLVNLICEEYKKAWQGIYPLELS 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + I +++ + + +P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSVQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + R+ V + + T++ ++ +K G I + A S Sbjct: 237 DAIEVDRRWVKVLTREIQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIRA--S 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302 G ++ C+ G Y IRI Sbjct: 295 IEGVPVFECQYGTHNAKYAIRIEQ 318 >gi|253688959|ref|YP_003018149.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755537|gb|ACT13613.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 337 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + L Sbjct: 60 ERFARQFRMGLFNLLRRSPDITVGGIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIIAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVMTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|281601385|gb|ADA74369.1| Flagellar motor switch protein FliM [Shigella flexneri 2002017] Length = 349 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|291613061|ref|YP_003523218.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus ES-1] gi|291583173|gb|ADE10831.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus ES-1] Length = 333 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 13/292 (4%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R+ G T+E I+ L++ L +IS + KFS I + Sbjct: 43 ERIVR--GRMPTMEIINERFARLFRISLYNFIHRSS----EISVGPVRVMKFSEFIRNLP 96 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + + + NLV ++++L G ++ R + E ++ ++ Sbjct: 97 VPANLNLVQVKPLRGSALFIFDPNLVFMVVDSLFGGDGRFHTRVEGREFTQTEHRIIQKL 156 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + + T Q+ + NE V + V S Sbjct: 157 LDVVFQTYGKSWETVQKLDFEFIRSEV--NPQFANIATPNEVVVVTTFEVEFTGVGGSIH 214 Query: 199 LIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +P +++ L S + + + + +R+ V + + T ++ V Sbjct: 215 ICMPYA-MIEPIREMLYSTMQGDHVIADKRWLHMLSRQIQLAEVELTAVLGHATTNVEHV 273 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ++ G +IP + ++ + + C+ G Y +++ + + Sbjct: 274 LKMRAGDIIPLEVEDTIQVLV--DTVPVMECKYGSSNGQYALKVEKMLATEH 323 >gi|323174676|gb|EFZ60296.1| flagellar motor switch protein FliM [Escherichia coli LT-68] Length = 334 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 99/303 (32%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + +T+E I+ ++ L + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRER--LQTLEIINERFARHFRMGLFNLLR----RSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|170769401|ref|ZP_02903854.1| flagellar motor switch protein FliM [Escherichia albertii TW07627] gi|170121725|gb|EDS90656.1| flagellar motor switch protein FliM [Escherichia albertii TW07627] Length = 334 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 97/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 STESDIRPYDPNTQQRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + ++ N N+ V Sbjct: 144 REFTDTEQRVINRMLKLALEGYSDAWKAINPLNVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ Q S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPQENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPSDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|332095507|gb|EGJ00523.1| flagellar motor switch protein FliM [Shigella dysenteriae 155-74] Length = 334 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ K I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRKRLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|283832660|ref|ZP_06352401.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC 29220] gi|291072334|gb|EFE10443.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC 29220] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 10/318 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + +E I+ ++ L + + DI Sbjct: 26 ISGIAKESDIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S +LV ++NL G Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + ++ N N+ Sbjct: 140 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + L+ S N+ ++ + R+ Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G V Y +R Sbjct: 259 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 316 Query: 300 ITDRINFDQKSLKNFLHK 317 + IN SL K Sbjct: 317 VEHLINPILNSLNEEQPK 334 >gi|218549270|ref|YP_002383061.1| flagellar motor switch protein FliM [Escherichia fergusonii ATCC 35469] gi|218356811|emb|CAQ89439.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114212|gb|EGC08185.1| flagellar motor switch protein FliM [Escherichia fergusonii B253] gi|325497687|gb|EGC95546.1| flagellar motor switch protein FliM [Escherichia fergusonii ECD227] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 10/318 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + I + + + + DI Sbjct: 26 ISGITNESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S LV ++NL G Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPALVFIAVDNLFGGDGRFPT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + ++ N N+ Sbjct: 140 KVEGREFTHTEQRVINRMLKLALEGYRDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + L+ S ++ ++ + R+ Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRNNLVRQVQHSQ 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G + Y +R Sbjct: 259 LELVANFAEISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316 Query: 300 ITDRINFDQKSLKNFLHK 317 I IN SL K Sbjct: 317 IEHLINPILNSLNEEQPK 334 >gi|300994270|ref|ZP_07180822.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1] gi|300304935|gb|EFJ59455.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|227328351|ref|ZP_03832375.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 60 ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|227112534|ref|ZP_03826190.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 337 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 60 ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|15831938|ref|NP_310711.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Sakai] gi|82543593|ref|YP_407540.1| flagellar motor switch protein FliM [Shigella boydii Sb227] gi|157156914|ref|YP_001463247.1| flagellar motor switch protein FliM [Escherichia coli E24377A] gi|157161416|ref|YP_001458734.1| flagellar motor switch protein FliM [Escherichia coli HS] gi|168751874|ref|ZP_02776896.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4113] gi|168758259|ref|ZP_02783266.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4401] gi|168764429|ref|ZP_02789436.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4501] gi|168771552|ref|ZP_02796559.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4486] gi|168777372|ref|ZP_02802379.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4196] gi|168783342|ref|ZP_02808349.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4076] gi|168790295|ref|ZP_02815302.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869] gi|168802292|ref|ZP_02827299.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508] gi|170019722|ref|YP_001724676.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739] gi|170684212|ref|YP_001743300.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5] gi|188494069|ref|ZP_03001339.1| flagellar motor switch protein FliM [Escherichia coli 53638] gi|191168308|ref|ZP_03030101.1| flagellar motor switch protein FliM [Escherichia coli B7A] gi|191173313|ref|ZP_03034843.1| flagellar motor switch protein FliM [Escherichia coli F11] gi|193071140|ref|ZP_03052064.1| flagellar motor switch protein FliM [Escherichia coli E110019] gi|194429931|ref|ZP_03062441.1| flagellar motor switch protein FliM [Escherichia coli B171] gi|194439587|ref|ZP_03071660.1| flagellar motor switch protein FliM [Escherichia coli 101-1] gi|195939251|ref|ZP_03084633.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4024] gi|208810354|ref|ZP_03252230.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4206] gi|208816529|ref|ZP_03257649.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4045] gi|208818778|ref|ZP_03259098.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4042] gi|209396357|ref|YP_002271061.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4115] gi|209919367|ref|YP_002293451.1| flagellar motor switch protein FliM [Escherichia coli SE11] gi|215487145|ref|YP_002329576.1| flagellar motor switch protein FliM [Escherichia coli O127:H6 str. E2348/69] gi|217328609|ref|ZP_03444690.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14588] gi|218554525|ref|YP_002387438.1| flagellar motor switch protein FliM [Escherichia coli IAI1] gi|218558802|ref|YP_002391715.1| flagellar motor switch protein FliM [Escherichia coli S88] gi|218689940|ref|YP_002398152.1| flagellar motor switch protein FliM [Escherichia coli ED1a] gi|218695550|ref|YP_002403217.1| flagellar motor switch protein FliM [Escherichia coli 55989] gi|218699494|ref|YP_002407123.1| flagellar motor switch protein FliM [Escherichia coli IAI39] gi|218705438|ref|YP_002412957.1| flagellar motor switch protein FliM [Escherichia coli UMN026] gi|227885626|ref|ZP_04003431.1| flagellar motor switch protein FliM [Escherichia coli 83972] gi|254793595|ref|YP_003078432.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14359] gi|256017862|ref|ZP_05431727.1| flagellar motor switch protein FliM [Shigella sp. D9] gi|256022397|ref|ZP_05436262.1| flagellar motor switch protein FliM [Escherichia sp. 4_1_40B] gi|260844344|ref|YP_003222122.1| flagellar motor switching and energizing component FliM [Escherichia coli O103:H2 str. 12009] gi|260855920|ref|YP_003229811.1| flagellar motor switching and energizing component FliM [Escherichia coli O26:H11 str. 11368] gi|260868538|ref|YP_003234940.1| flagellar motor switching and energizing component FliM [Escherichia coli O111:H- str. 11128] gi|261227560|ref|ZP_05941841.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. FRIK2000] gi|261254616|ref|ZP_05947149.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. FRIK966] gi|291283122|ref|YP_003499940.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str. CB9615] gi|293405428|ref|ZP_06649420.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412] gi|293410301|ref|ZP_06653877.1| flagellar motor switch protein FliM [Escherichia coli B354] gi|293415255|ref|ZP_06657898.1| flagellar motor switch protein FliM [Escherichia coli B185] gi|293446325|ref|ZP_06662747.1| flagellar motor switch protein FliM [Escherichia coli B088] gi|298381072|ref|ZP_06990671.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302] gi|300818635|ref|ZP_07098843.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1] gi|300822285|ref|ZP_07102426.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7] gi|300899202|ref|ZP_07117478.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1] gi|300904835|ref|ZP_07122661.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1] gi|300920164|ref|ZP_07136614.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1] gi|300923892|ref|ZP_07139907.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1] gi|300931158|ref|ZP_07146505.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1] gi|300940400|ref|ZP_07154985.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1] gi|300951570|ref|ZP_07165403.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1] gi|300956539|ref|ZP_07168821.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1] gi|301018205|ref|ZP_07182720.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1] gi|301305288|ref|ZP_07211385.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1] gi|301327732|ref|ZP_07220937.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1] gi|301644596|ref|ZP_07244585.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1] gi|306814232|ref|ZP_07448398.1| flagellar motor switch protein FliM [Escherichia coli NC101] gi|307138612|ref|ZP_07497968.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|307312469|ref|ZP_07592103.1| flagellar motor switch protein FliM [Escherichia coli W] gi|309795948|ref|ZP_07690361.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7] gi|312967142|ref|ZP_07781360.1| flagellar motor switch protein FliM [Escherichia coli 2362-75] gi|312973838|ref|ZP_07788010.1| flagellar motor switch protein FliM [Escherichia coli 1827-70] gi|331657991|ref|ZP_08358953.1| flagellar motor switch protein FliM [Escherichia coli TA206] gi|331663441|ref|ZP_08364351.1| flagellar motor switch protein FliM [Escherichia coli TA143] gi|331668636|ref|ZP_08369484.1| flagellar motor switch protein FliM [Escherichia coli TA271] gi|331683497|ref|ZP_08384098.1| flagellar motor switch protein FliM [Escherichia coli H299] gi|13362152|dbj|BAB36107.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Sakai] gi|81245004|gb|ABB65712.1| FliM [Shigella boydii Sb227] gi|157067096|gb|ABV06351.1| flagellar motor switch protein FliM [Escherichia coli HS] gi|157078944|gb|ABV18652.1| flagellar motor switch protein FliM [Escherichia coli E24377A] gi|169754650|gb|ACA77349.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739] gi|170521930|gb|ACB20108.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5] gi|187767405|gb|EDU31249.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4196] gi|188014186|gb|EDU52308.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4113] gi|188489268|gb|EDU64371.1| flagellar motor switch protein FliM [Escherichia coli 53638] gi|188999277|gb|EDU68263.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4076] gi|189354878|gb|EDU73297.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4401] gi|189359725|gb|EDU78144.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4486] gi|189365559|gb|EDU83975.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4501] gi|189370212|gb|EDU88628.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869] gi|189375729|gb|EDU94145.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508] gi|190901680|gb|EDV61436.1| flagellar motor switch protein FliM [Escherichia coli B7A] gi|190906430|gb|EDV66039.1| flagellar motor switch protein FliM [Escherichia coli F11] gi|192955535|gb|EDV86014.1| flagellar motor switch protein FliM [Escherichia coli E110019] gi|194412020|gb|EDX28332.1| flagellar motor switch protein FliM [Escherichia coli B171] gi|194421496|gb|EDX37510.1| flagellar motor switch protein FliM [Escherichia coli 101-1] gi|208724870|gb|EDZ74577.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4206] gi|208730872|gb|EDZ79561.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4045] gi|208738901|gb|EDZ86583.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4042] gi|209157757|gb|ACI35190.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4115] gi|209766818|gb|ACI81721.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766820|gb|ACI81722.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766822|gb|ACI81723.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766824|gb|ACI81724.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766826|gb|ACI81725.1| flagellar motor switch protein FliM [Escherichia coli] gi|209912626|dbj|BAG77700.1| flagellar motor switch protein FliM [Escherichia coli SE11] gi|215265217|emb|CAS09607.1| flagellar motor switching and energizing component [Escherichia coli O127:H6 str. E2348/69] gi|217317956|gb|EEC26383.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14588] gi|218352282|emb|CAU98039.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361293|emb|CAQ98877.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218365571|emb|CAR03298.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|218369480|emb|CAR17245.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218427504|emb|CAR08399.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|218432535|emb|CAR13428.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033684|emb|CAP76425.1| flagellar motor switch protein fliM [Escherichia coli LF82] gi|227837199|gb|EEJ47665.1| flagellar motor switch protein FliM [Escherichia coli 83972] gi|254592995|gb|ACT72356.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754569|dbj|BAI26071.1| flagellar motor switching and energizing component FliM [Escherichia coli O26:H11 str. 11368] gi|257759491|dbj|BAI30988.1| flagellar motor switching and energizing component FliM [Escherichia coli O103:H2 str. 12009] gi|257764894|dbj|BAI36389.1| flagellar motor switching and energizing component FliM [Escherichia coli O111:H- str. 11128] gi|281179007|dbj|BAI55337.1| flagellar motor switch protein FliM [Escherichia coli SE15] gi|284921853|emb|CBG34928.1| flagellar motor switch protein FliM [Escherichia coli 042] gi|290762995|gb|ADD56956.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str. CB9615] gi|291323155|gb|EFE62583.1| flagellar motor switch protein FliM [Escherichia coli B088] gi|291427636|gb|EFF00663.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412] gi|291432903|gb|EFF05882.1| flagellar motor switch protein FliM [Escherichia coli B185] gi|291470769|gb|EFF13253.1| flagellar motor switch protein FliM [Escherichia coli B354] gi|294492735|gb|ADE91491.1| flagellar motor switch protein FliM [Escherichia coli IHE3034] gi|298278514|gb|EFI20028.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302] gi|300316639|gb|EFJ66423.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1] gi|300357183|gb|EFJ73053.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1] gi|300399792|gb|EFJ83330.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1] gi|300403262|gb|EFJ86800.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1] gi|300412821|gb|EFJ96131.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1] gi|300419855|gb|EFK03166.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1] gi|300449197|gb|EFK12817.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1] gi|300454794|gb|EFK18287.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1] gi|300461015|gb|EFK24508.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1] gi|300525168|gb|EFK46237.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7] gi|300528807|gb|EFK49869.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1] gi|300839494|gb|EFK67254.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1] gi|300845732|gb|EFK73492.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1] gi|301077071|gb|EFK91877.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1] gi|305852391|gb|EFM52842.1| flagellar motor switch protein FliM [Escherichia coli NC101] gi|306907640|gb|EFN38143.1| flagellar motor switch protein FliM [Escherichia coli W] gi|307553958|gb|ADN46733.1| flagellar motor switch protein FliM [Escherichia coli ABU 83972] gi|307626579|gb|ADN70883.1| flagellar motor switch protein FliM [Escherichia coli UM146] gi|308120398|gb|EFO57660.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7] gi|309702234|emb|CBJ01551.1| flagellar motor switch protein FliM [Escherichia coli ETEC H10407] gi|310332433|gb|EFP99668.1| flagellar motor switch protein FliM [Escherichia coli 1827-70] gi|312288606|gb|EFR16508.1| flagellar motor switch protein FliM [Escherichia coli 2362-75] gi|312946538|gb|ADR27365.1| flagellar motor switch protein FliM [Escherichia coli O83:H1 str. NRG 857C] gi|315061245|gb|ADT75572.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257223|gb|EFU37191.1| flagellar motor switch protein FliM [Escherichia coli MS 85-1] gi|315286659|gb|EFU46092.1| flagellar motor switch protein FliM [Escherichia coli MS 110-3] gi|315290262|gb|EFU49640.1| flagellar motor switch protein FliM [Escherichia coli MS 153-1] gi|315296479|gb|EFU55776.1| flagellar motor switch protein FliM [Escherichia coli MS 16-3] gi|320175465|gb|EFW50564.1| Flagellar motor switch protein FliM [Shigella dysenteriae CDC 74-1112] gi|320184483|gb|EFW59287.1| Flagellar motor switch protein FliM [Shigella flexneri CDC 796-83] gi|320191919|gb|EFW66566.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC1212] gi|320194342|gb|EFW68973.1| Flagellar motor switch protein FliM [Escherichia coli WV_060327] gi|320198635|gb|EFW73235.1| Flagellar motor switch protein FliM [Escherichia coli EC4100B] gi|320641793|gb|EFX11181.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. G5101] gi|320647152|gb|EFX15985.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str. 493-89] gi|320652436|gb|EFX20734.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str. H 2687] gi|320658038|gb|EFX25800.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658610|gb|EFX26304.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str. USDA 5905] gi|320668508|gb|EFX35335.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. LSU-61] gi|323152724|gb|EFZ38996.1| flagellar motor switch protein FliM [Escherichia coli EPECa14] gi|323158576|gb|EFZ44590.1| flagellar motor switch protein FliM [Escherichia coli E128010] gi|323180802|gb|EFZ66342.1| flagellar motor switch protein FliM [Escherichia coli 1180] gi|323183929|gb|EFZ69316.1| flagellar motor switch protein FliM [Escherichia coli 1357] gi|323186821|gb|EFZ72141.1| flagellar motor switch protein FliM [Escherichia coli RN587/1] gi|323378178|gb|ADX50446.1| flagellar motor switch protein FliM [Escherichia coli KO11] gi|323937215|gb|EGB33495.1| flagellar motor switch protein FliM [Escherichia coli E1520] gi|323940396|gb|EGB36587.1| flagellar motor switch protein FliM [Escherichia coli E482] gi|323948351|gb|EGB44338.1| flagellar motor switch protein FliM [Escherichia coli H120] gi|323952438|gb|EGB48311.1| flagellar motor switch protein FliM [Escherichia coli H252] gi|323956341|gb|EGB52084.1| flagellar motor switch protein FliM [Escherichia coli H263] gi|323961989|gb|EGB57588.1| flagellar motor switch protein FliM [Escherichia coli H489] gi|323972755|gb|EGB67955.1| flagellar motor switch protein FliM [Escherichia coli TA007] gi|324005856|gb|EGB75075.1| flagellar motor switch protein FliM [Escherichia coli MS 57-2] gi|324013500|gb|EGB82719.1| flagellar motor switch protein FliM [Escherichia coli MS 60-1] gi|324018854|gb|EGB88073.1| flagellar motor switch protein FliM [Escherichia coli MS 117-3] gi|324118994|gb|EGC12883.1| flagellar motor switch protein FliM [Escherichia coli E1167] gi|326342355|gb|EGD66136.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. 1044] gi|326344860|gb|EGD68607.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. 1125] gi|330911751|gb|EGH40261.1| flagellar motor switch protein FliM [Escherichia coli AA86] gi|331056239|gb|EGI28248.1| flagellar motor switch protein FliM [Escherichia coli TA206] gi|331059240|gb|EGI31217.1| flagellar motor switch protein FliM [Escherichia coli TA143] gi|331063830|gb|EGI35741.1| flagellar motor switch protein FliM [Escherichia coli TA271] gi|331079712|gb|EGI50909.1| flagellar motor switch protein FliM [Escherichia coli H299] gi|332093098|gb|EGI98162.1| flagellar motor switch protein FliM [Shigella boydii 5216-82] gi|332096930|gb|EGJ01919.1| flagellar motor switch protein FliM [Shigella boydii 3594-74] gi|332343671|gb|AEE57005.1| flagellar motor switch protein FliM [Escherichia coli UMNK88] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|260598454|ref|YP_003211025.1| flagellar motor switch protein FliM [Cronobacter turicensis z3032] gi|260217631|emb|CBA31927.1| Flagellar motor switch protein fliM [Cronobacter turicensis z3032] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 96/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 33 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 147 HTEQRVINRMLKLALEAYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S + + D R+ + + Sbjct: 206 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQHWRDNLVRQVQHSELELIANFA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P ++ + +G + + + G V Y +R+ IN Sbjct: 266 EIPLRLSKILKLKPGDVLPIEKPDRILVHV--DGVPVLTSQYGTVSGQYALRVEHLINP 322 >gi|157145261|ref|YP_001452580.1| flagellar motor switch protein FliM [Citrobacter koseri ATCC BAA-895] gi|157082466|gb|ABV12144.1| hypothetical protein CKO_00998 [Citrobacter koseri ATCC BAA-895] Length = 334 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 100/310 (32%), Gaps = 10/310 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPI 324 Query: 308 QKSLKNFLHK 317 SL K Sbjct: 325 LNSLNEEQPK 334 >gi|193066386|ref|ZP_03047434.1| flagellar motor switch protein FliM [Escherichia coli E22] gi|192925971|gb|EDV80617.1| flagellar motor switch protein FliM [Escherichia coli E22] Length = 334 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKALNPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|311279113|ref|YP_003941344.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1] gi|308748308|gb|ADO48060.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1] Length = 334 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEAYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + + ++ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRSEDQNWRENLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DISLRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323 >gi|291617855|ref|YP_003520597.1| FliM [Pantoea ananatis LMG 20103] gi|291152885|gb|ADD77469.1| FliM [Pantoea ananatis LMG 20103] gi|327394272|dbj|BAK11694.1| flagellar motor switch protein FliM [Pantoea ananatis AJ13355] Length = 335 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + I + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMALFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + ++ N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + + ++ S ++ D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLREMLVNPPLENSRSEDTHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L V+ LK G V+P E I +G + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRVLQLKPGDVLPIEKPE--RIIAHVDGVPVLTSQYGTLNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|194434971|ref|ZP_03067214.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012] gi|194416806|gb|EDX32932.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012] Length = 334 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|30063384|ref|NP_837555.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|56480007|ref|NP_707830.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301] gi|30041636|gb|AAP17364.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|56383558|gb|AAN43537.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301] gi|313650167|gb|EFS14580.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|332757511|gb|EGJ87846.1| flagellar motor switch protein FliM [Shigella flexneri K-671] gi|333017577|gb|EGK36889.1| flagellar motor switch protein FliM [Shigella flexneri K-304] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|320182738|gb|EFW57622.1| Flagellar motor switch protein FliM [Shigella boydii ATCC 9905] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|332756101|gb|EGJ86454.1| flagellar motor switch protein FliM [Shigella flexneri 4343-70] gi|332757253|gb|EGJ87590.1| flagellar motor switch protein FliM [Shigella flexneri 2747-71] gi|332766683|gb|EGJ96887.1| flagellar motor switch protein FliM [Shigella flexneri 2930-71] gi|333003346|gb|EGK22892.1| flagellar motor switch protein FliM [Shigella flexneri K-218] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|323968361|gb|EGB63768.1| flagellar motor switch protein FliM [Escherichia coli M863] gi|323977874|gb|EGB72960.1| flagellar motor switch protein FliM [Escherichia coli TW10509] gi|327253077|gb|EGE64731.1| flagellar motor switch protein FliM [Escherichia coli STEC_7v] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G + Y +RI IN Sbjct: 267 DISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 >gi|16760920|ref|NP_456537.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141388|ref|NP_804730.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424998|ref|ZP_03357748.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584776|ref|ZP_03366602.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855271|ref|ZP_03383511.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829468|ref|ZP_06547080.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298898|pir||AI0752 flagellar motor switch protein FliM [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503217|emb|CAD05724.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi] gi|29137015|gb|AAO68579.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771] Length = 169 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N A+L +WS N + C N VITL+ Sbjct: 61 NYLGCEIGYKNHLIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDR 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKN 172 + +R LS +E LA +I+ C + Q + E F + + Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAK----CCARGQRARRFRTEPFAPHAHDARP 169 >gi|161502902|ref|YP_001570014.1| flagellar motor switch protein FliM [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864249|gb|ABX20872.1| hypothetical protein SARI_00961 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|16765314|ref|NP_460929.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180551|ref|YP_216968.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613455|ref|YP_001587420.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552791|ref|ZP_02346542.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993551|ref|ZP_02574645.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234149|ref|ZP_02659207.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239216|ref|ZP_02664274.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244827|ref|ZP_02669759.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259737|ref|ZP_02681710.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462482|ref|ZP_02696413.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823019|ref|ZP_02835019.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444199|ref|YP_002041241.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451006|ref|YP_002046027.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194737897|ref|YP_002115010.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249640|ref|YP_002146047.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265099|ref|ZP_03165173.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245200|ref|YP_002215110.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389660|ref|ZP_03216271.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931068|ref|ZP_03221894.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352330|ref|YP_002226131.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856511|ref|YP_002243162.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583525|ref|YP_002637323.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912451|ref|ZP_04656288.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|120346|sp|P26418|FLIM_SALTY RecName: Full=Flagellar motor switch protein FliM gi|154035|gb|AAA27104.1| fliM flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420511|gb|AAL20888.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128184|gb|AAX65887.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362819|gb|ABX66587.1| hypothetical protein SPAB_01172 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402862|gb|ACF63084.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409310|gb|ACF69529.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194713399|gb|ACF92620.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634275|gb|EDX52627.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213343|gb|ACH50740.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243354|gb|EDY25974.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288083|gb|EDY27470.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939716|gb|ACH77049.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602105|gb|EDZ00651.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320112|gb|EDZ05317.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272111|emb|CAR36964.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322661|gb|EDZ10500.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328413|gb|EDZ15177.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331867|gb|EDZ18631.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336350|gb|EDZ23114.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340670|gb|EDZ27434.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350615|gb|EDZ37246.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708314|emb|CAR32617.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468052|gb|ACN45882.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247142|emb|CBG24965.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993965|gb|ACY88850.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158490|emb|CBW18000.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912966|dbj|BAJ36940.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085405|emb|CBY95186.1| Flagellar motor switch protein fliM [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224621|gb|EFX49684.1| Flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616969|gb|EFY13877.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618208|gb|EFY15100.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625879|gb|EFY22698.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626331|gb|EFY23141.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632746|gb|EFY29491.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639088|gb|EFY35781.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640404|gb|EFY37060.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647235|gb|EFY43734.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649917|gb|EFY46338.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655525|gb|EFY51833.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660303|gb|EFY56541.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662984|gb|EFY59191.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668169|gb|EFY64328.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674072|gb|EFY70166.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675576|gb|EFY71650.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683013|gb|EFY79029.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686707|gb|EFY82685.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715027|gb|EFZ06598.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130255|gb|ADX17685.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195405|gb|EFZ80585.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198067|gb|EFZ83184.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204461|gb|EFZ89467.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207551|gb|EFZ92499.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211010|gb|EFZ95870.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217536|gb|EGA02255.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220731|gb|EGA05175.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226682|gb|EGA10879.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231558|gb|EGA15671.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236001|gb|EGA20080.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240571|gb|EGA24614.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245463|gb|EGA29463.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247581|gb|EGA31532.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253956|gb|EGA37780.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255516|gb|EGA39277.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262114|gb|EGA45677.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266237|gb|EGA49727.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270654|gb|EGA54095.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622858|gb|EGE29203.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627380|gb|EGE33723.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988865|gb|AEF07848.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont of Hydra magnipapillata] Length = 334 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS ++S + F+ ++ + + C Sbjct: 59 ERFARNLRVGLFNFIRRSPEISVGPVVVQRYSAFLRELAVPTNFNIVAIRPLRGSGLVVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++ L G + ++ R S E+++ R + I+ + Sbjct: 119 EPALVFGVIDTLYGGIGKFQTRIEGRDFSATEQRVINRLVDVITTEYKKAWKGIYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + + I ++ + P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVISTSFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S ++ R+ V I + T++ ++ +K G I + A + Sbjct: 237 DSIEVDRRWVNVLTREIQAAEVTIVAELARADATVEQLLGMKKGDFIELDRAPRIQATV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKN 313 +G I+ C+ G Y IRI + DQ L Sbjct: 296 -DGVPIFECQYGTHNSKYAIRIEKALRGNDQNWLGE 330 >gi|15802380|ref|NP_288406.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 EDL933] gi|12516052|gb|AAG56960.1|AE005417_2 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] Length = 334 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 95/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGX 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|301029402|ref|ZP_07192496.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1] gi|299877706|gb|EFI85917.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1] Length = 334 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKQLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|238755314|ref|ZP_04616657.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473] gi|238706450|gb|EEP98824.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473] Length = 334 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRERLHALEI------INERFARHFRMGLFNLLRRSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLVHLKPLRGTALFVFEPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + +I N N+ V T ++ Sbjct: 147 HTEQRVITRMLRLALDAYRDAWGAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L+ S + + + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSNWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 265 AEIPLRLSQILKLKPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|333003041|gb|EGK22595.1| flagellar motor switch protein FliM [Shigella flexneri VA-6] Length = 334 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G ++P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDILPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|317492415|ref|ZP_07950844.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919754|gb|EFV41084.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium 9_2_54FAA] Length = 337 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 105/299 (35%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 36 DVRPYDPTTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAVKIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L+ + + +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLIHLNPLRGTALMVFAPSLVFMAVDNLFGGDGRFPTKVDGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ KR + S + +I N N+ V T + Sbjct: 150 HTEQRVIKRMLRLALDAYRDAWSAIYKLEVEYVR-SEIQVKFTNITTSPNDIVVTTPFTV 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRIN 247 + ++ F + IP + + ++ ++ Q + D +++ + + Sbjct: 209 EVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVANFV 268 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L +V+ L+ G V+P EK I + +G + +C+ G Y +R+ IN Sbjct: 269 DIPLRLSEVLKLQPGDVLPIEKPEK--LIANVDGVPVLTCQYGSQNGQYALRVERLINP 325 >gi|146312182|ref|YP_001177256.1| flagellar motor switch protein FliM [Enterobacter sp. 638] gi|145319058|gb|ABP61205.1| flagellar motor switch protein FliM [Enterobacter sp. 638] Length = 334 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 98/311 (31%), Gaps = 10/311 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 33 PEIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + L S +LV ++NL G ++ R Sbjct: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + ++ N N+ V + Sbjct: 147 THTEQRVINRMLKLALESYSDAWKAIHPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFH 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + I N+ F + +P + + ++ S N+ ++ + R+ + + Sbjct: 206 VEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRNEDQNWRENLVRQVQHSQLELVASF 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I + + + + G V Y +R+ IN Sbjct: 266 ADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDDVPVLTSQYGTVNGQYALRVEHLINP 323 Query: 307 DQKSLKNFLHK 317 SL K Sbjct: 324 ILNSLNEEQPK 334 >gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] Length = 331 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 111/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V I+ S F + S + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ ++L+ L+G S + + N L+ +E K+ + L + Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L + + + NE V I++N I + + IP +L+ Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +LS Q ++ S + + Q + + + L T++D +T+++G V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAQLPLSVELGLTDITIEDFLTMQVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLDQKIEAPLLLKVGTLPKFTVQPGKKGKKLAIQIIDPLKGGDE 329 >gi|300717238|ref|YP_003742041.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063074|emb|CAX60194.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 335 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 100/300 (33%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ Y+ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRMVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + ++ ++ N N+ V T + Sbjct: 148 ATEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVITTPFQV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I N+ F + IP +++ +L S + ++ D ++ + + Sbjct: 207 EIGNLVGEFNICIPFS-MIEPLRETLVNPPLENSRQEDQNWRDTLVKQVQHSELELIANF 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 266 GEVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323 >gi|56413111|ref|YP_150186.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362037|ref|YP_002141674.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127368|gb|AAV76874.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093514|emb|CAR58975.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 334 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGTIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] Length = 362 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 106/304 (34%), Gaps = 14/304 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + +P R+ + ++ + G + L + + V++ TS Sbjct: 44 RTREKVTPYDFKRPERV--GKEQMRALQSLHEGFGRNFGAALSALLRSI----VEVKLTS 97 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 +S + S + F+ N + + +++ +++ LLG E P Sbjct: 98 VDQLTYSEFVFSLENPTCFNLLRAEPLEGNLILDINPSILYPIIDRLLGGGKEAGPV-AR 156 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E +L R L +++ L + NE V I Sbjct: 157 RPLTEIELRLVSRITHLFLQELKHAWEGVLPLKLSVDRVESNPQLVQIV--PPNEVVVLI 214 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE----NQSEDLIDPFARKTYQLNV 240 + +T+ +V L IP ++ + L+S N + I +++ Q V Sbjct: 215 SFELTLNDVRGMINLCIPFNSIER-IGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKV 273 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T D++ L++G +I +T ++ G + G + + +RI Sbjct: 274 ELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRI 333 Query: 301 TDRI 304 I Sbjct: 334 EQSI 337 >gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM 6578] Length = 341 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 11/285 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI + + L L + V + S + I S ++ Sbjct: 53 RTISIMHETFARLTTTSLSAQLRSL----VQVHVASVDQLTYEEFIRSIPNPTTIGIINM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + ++++ L G + +R LS +E + + + +I + + Sbjct: 109 DPLKGSAILEIDPTITYSIIDRLFGGPGDGSVVPRDRDLSDIETTVMEGIMVRILGNMRE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + P L + E V + + + +V IP T ++ Sbjct: 169 AWSQVIDLRPRLGQIDTNPQFAQIV--PPTEMVVLVTLETKVGDVEGMMNFCIPYLT-IE 225 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+Q + + + + VN+ + ++D+++++ G V Sbjct: 226 PIISKLSAQYWYSSVRKGGTTENLAILKERISSVEVNLVVEVGSMNLKMRDILSIQKGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I R K +L + + C GRVGK +++ ++I Q+ Sbjct: 286 IMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLAVQLVEKIEESQE 330 >gi|194471387|ref|ZP_03077371.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457751|gb|EDX46590.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 334 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 98/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y++R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYSLRVEHLINP 323 >gi|261340410|ref|ZP_05968268.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC 35316] gi|288317502|gb|EFC56440.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC 35316] Length = 334 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 NIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DVSMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINP 323 >gi|74312485|ref|YP_310904.1| flagellar motor switch protein FliM [Shigella sonnei Ss046] gi|73855962|gb|AAZ88669.1| flagellar motor switch protein FliM [Shigella sonnei Ss046] gi|323168934|gb|EFZ54614.1| flagellar motor switch protein FliM [Shigella sonnei 53G] Length = 334 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 97/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G + ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGNGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DGIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|329298601|ref|ZP_08255937.1| flagellar motor switch protein FliM [Plautia stali symbiont] Length = 269 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 81/254 (31%), Gaps = 4/254 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + DIS + + + + + L + S +LV ++NL G Sbjct: 7 LRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLQPLRGTALVVFSPSLVFIAVDNLFG 66 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ +R + + ++ N Sbjct: 67 GDGRFPTKVEGREFTHTEQRVIRRMLKLALEGYSDAWKAIYPLEVEYVR-SEMQVKFINI 125 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFA 232 N+ V + I N+ F + IP + L+ S + D Sbjct: 126 TTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLV 185 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + + L ++ LK+G V+P I +G + + + G + Sbjct: 186 KQVQHSELELIAHFAETSLRLSRILQLKLGDVLPIEKP--DRIIAHVDGVPVLTSQYGTL 243 Query: 293 GKNYTIRITDRINF 306 Y +R+ +IN Sbjct: 244 NGQYALRVEHQINP 257 >gi|283785715|ref|YP_003365580.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168] gi|282949169|emb|CBG88777.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168] Length = 334 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 98/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + + ++ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] Length = 333 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 89/269 (33%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + I+ TS + KF I++ S + + Sbjct: 67 EKFMRAFRVSLSSALRKIASITLTSTEFLKFGEFINTLPMPTCMSVLRFGNLRGSALFVI 126 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L L+++ G + ++ + + +E + ++ + + ++ ++ + Sbjct: 127 ESKLAYALVDSFFGGADRPYTKIDGKDFTPIELSIVQKVVGLAINDMEMAWASIEKIGCS 186 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + V ++ +EN + ++IP T+ +K L + Sbjct: 187 FVRTEVNPQFVGIV--PPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQV 244 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + + ++ I + + LKD++ LK+G VIP + Sbjct: 245 ETDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDV 304 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 + G + G +++T + Sbjct: 305 AVEGVRKFKGYYGIHHGTVAVQVTRPVEK 333 >gi|295098287|emb|CBK87377.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 334 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 10/310 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 NIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DISMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINPI 324 Query: 308 QKSLKNFLHK 317 SL K Sbjct: 325 LNSLNEEQPK 334 >gi|294636877|ref|ZP_06715207.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685] gi|291089907|gb|EFE22468.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685] Length = 337 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 88/268 (32%), Gaps = 4/268 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L + Sbjct: 61 ERFARQFRMGLFNLLRRSPDITVGAVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++NL G ++ R + E+++ +R + + Sbjct: 121 EPSLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLEVE 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +I N N+ V T + + ++ F + IP + + ++ + Sbjct: 181 YVR-SEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLE 239 Query: 220 SENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + Q + D +++ + + L DV+ L++G V+P I + Sbjct: 240 NSKQEDQHWRDTLSKQVQHSELELVANFVDIPLRLSDVLKLQVGDVLPIDRP--DRLIAN 297 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + +C+ G Y +R+ IN Sbjct: 298 VDGVPVLTCQYGCYHGQYALRVEKMINP 325 >gi|16129892|ref|NP_416455.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108777|ref|AP_002557.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081589|ref|YP_001730909.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901150|ref|YP_002926946.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773106|ref|YP_003035937.1| flagellar motor switch protein FliM [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120345|sp|P06974|FLIM_ECOLI RecName: Full=Flagellar motor switch protein FliM gi|145981|gb|AAA23786.1| FlaAII protein [Escherichia coli] gi|1736611|dbj|BAA15770.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889424|gb|ACB03131.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861113|gb|ACR63111.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324150|gb|ACT28752.1| flagellar motor switch protein FliM [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448942|gb|ACX39364.1| flagellar motor switch protein FliM [Escherichia coli DH1] gi|315136582|dbj|BAJ43741.1| flagellar motor switch protein FliM [Escherichia coli DH1] Length = 334 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519] gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii] Length = 332 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 108/289 (37%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 KT+ I + + +L + +DV S + + +S + S Sbjct: 53 KTLHMIHENFSRILNTYLSGYLRSITQIDV----ISVEELSYYEFNNSISNPALISVIDF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 SN L T+++ +LG + + + +R + +E + + +A +S +L + Sbjct: 109 MPLPGQIIFEMSNRLAFTMIDRILGGNGKY--ESESRPFTEIETTILNKLMANVSRLLIE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L+ + + SNE V I + + ++ + +P +L+ Sbjct: 167 PWENVIELDPELDKIETNSQFAQIVS--SNETVALITLRANVGDIEGLMNICMPH-IVLE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L +LS++ ++L + + + N++I+ + T+++ + L+ G V Sbjct: 224 PILPNLSTKFWFSTVKKELNEDDKGYLETRVKRANIDINAVVGDTYITVEEFIYLQEGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + L GK Y G + N +IT + + Sbjct: 284 IKLSRKIDEDLELHVEGKTKYLGRPGTLKNNMAFKITKVVEKGDEDYDE 332 >gi|308187297|ref|YP_003931428.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1] gi|308057807|gb|ADO09979.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1] Length = 335 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + I + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMTLFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + ++ N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + L+ S + D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ LK G V+P E I + + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKPE--RIIAHVDSVPVLTSQYGTMNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|312172110|emb|CBX80367.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC BAA-2158] Length = 336 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALESYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905] gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905] Length = 331 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V I+ S F + S + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ ++L+ L+G S + + N L+ +E K+ + L + Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L + + + NE V I++N I + + IP +L+ Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +LS Q ++ S + + Q + + + L T++D +T+++G V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329 >gi|304398862|ref|ZP_07380732.1| flagellar motor switch protein FliM [Pantoea sp. aB] gi|304353566|gb|EFM17943.1| flagellar motor switch protein FliM [Pantoea sp. aB] Length = 335 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + I + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMALFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + ++ N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + L+ S + D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ LK G V+P E I + + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKPE--RIIAHVDSVPVLTSQYGTMNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] Length = 331 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 97/262 (37%), Gaps = 5/262 (1%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 +M + + + Q ++ + L L LL Sbjct: 72 SLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVFIFKEKLAFYLL 131 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 E+LLG + + L RSL+ +E + + TIA LN+ + ++ +L Sbjct: 132 EHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIESSLVKIESSTR 191 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSED 226 L + V + +T N+ VL++P +L + S SE+Q Sbjct: 192 LINIV--PGDASVLAAHFVVTGNNLEDEIVLVLPMA-MLDPLKEKMREGSAVFSESQDRP 248 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 ++ Q++V++ ++ T++D++ K+G ++ + + A G+ + Sbjct: 249 WQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQVRAAGQPKFQ 308 Query: 287 CELGRVGKNYTIRITDRINFDQ 308 G +RI+ RIN + Sbjct: 309 AIAGTHQGKKAVRISGRINRNN 330 >gi|261344127|ref|ZP_05971771.1| flagellar motor switch protein FliM [Providencia rustigianii DSM 4541] gi|282567719|gb|EFB73254.1| flagellar motor switch protein FliM [Providencia rustigianii DSM 4541] Length = 335 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + + Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGAIKVEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++NL G + + + E+++ R + + Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALNAYRDAWRPIADVEVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 +I N N+ V T + I N F + IP + L+ LI+ Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINP-PT 236 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++E + + + + + + + ++ L+ G V+P I+ Sbjct: 237 EQGHQENEAWVTNLVTQVKRSELELVANLVEIPLRISSLLQLQKGDVLPIDKP--DRLIV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + +G + + + G Y +R+ IN +L Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330 >gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60] Length = 337 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 96/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + + Sbjct: 36 DVRPYDPTTQRRVVRERLQALEI------VNERFARQFRMGLFNLLRRSPDITVGAVRIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + +I N N+ V T + Sbjct: 150 HTEQRVIQRMLRLALDAYRDAWGAIFKLDVEYVR-SEIQVKFTNITTSPNDIVVTTPFTV 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRIN 247 + ++ F + IP + + ++ ++ Q + D +++ + + Sbjct: 209 EVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVANFV 268 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L DV+ L+IG V+P + + +G + +C+ G Y +R+ IN Sbjct: 269 DVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEKMINP 325 >gi|292487985|ref|YP_003530862.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|292899205|ref|YP_003538574.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199053|emb|CBJ46164.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553409|emb|CBA20454.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] Length = 336 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] Length = 329 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 98/284 (34%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP + V + + ++ +S ++ + Sbjct: 54 RTLEIIFEHYGRLLSTNLPAYLRM----PVQVEVKTSEAVIYSEFSNALSNPVLLGVVDF 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + ++NL +++ LLG + + P R S +E + +R +L + Sbjct: 110 EPLDGNIVLEIASNLGFVIIDRLLGGAGK--PLSKGRDFSEIELSIIERIFNICVNLLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P +E + + +E + + +++ + + + +P L Sbjct: 168 PWQNVLSIVPRMERIETNSQFAQIIS--PSEMIAIVTISIKLGDTEGLMNVCLPYSVLEP 225 Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + S Q D D + + + + + ++ D + L +G +I Sbjct: 226 VMDKLNTKYWFSTMQHRDVKTYEDAISSLISKAQIPVKAVLGNSTISVNDFLNLNVGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++ G NY +RIT+ + +++ Sbjct: 286 RLDRKVDEELDVYVGNIHKFTALPGSADDNYAVRITNVLRGEEE 329 >gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR] gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR] Length = 333 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 108/284 (38%), Gaps = 13/284 (4%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 T++ I + L FL + V ++ S + + I S + + + Sbjct: 56 TLQAIHENFARLLATFLSAHLRTV----VTMNVHSVEQITYDEFIRSLPNPTLLNIFMME 111 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + N + + N+ T+L+ L G + ++ R L+ +E+ + ++ I + +L + Sbjct: 112 PLAGNAILEVNPNVTFTILDRLFGGPGQAPEKM--RGLTDIERTVIEKVIIRCLQILKEA 169 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 P LE + + E V I+++ TI + L IP +L+ Sbjct: 170 WENIIVFDPKLEIIETNPMFTQIVS--PTEMVVLISIHATIGDNEGIMNLCIPF-IVLEP 226 Query: 210 TLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L++ ++ + + I R+ + + + + L +++ L+ G VI Sbjct: 227 IISKLTAHFWFAGTAKTVTAEHIQNTQRRLEKAKITLSAVLGETTIKLGELLELQPGDVI 286 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +R + ++ + G VG ++IT + + Sbjct: 287 QLDNRTTDELKILVGDRKKFYGRPGTVGSRLAVQITRLVKEGDE 330 >gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda] Length = 337 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 20/304 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTS 64 + P P ++ + + +L + + + F+ + DI+ + Sbjct: 36 DVRPYDP---------TTQRRVVRERLQAL-EIVNERFARQFRMGLFNLVRRSPDITVGA 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + +LV ++NL G ++ Sbjct: 86 VRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDG 145 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + I N N+ V T Sbjct: 146 REFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVKYVR-SKIQVKFTNITTSPNDIVVTT 204 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + ++ F + IP + L+ L++ S+ + + D +++ + + Sbjct: 205 PFTVEVGALSGEFNICIPFSMIGTLRELLVNP-PLENSKQEDQHWRDTLSKQVQHSELEL 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L DV+ L+IG V+P + + +G + +C+ G Y +R+ Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321 Query: 303 RINF 306 IN Sbjct: 322 MINP 325 >gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 333 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 104/289 (35%), Gaps = 10/289 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + +++ L + ++ V ++ S KF + + Sbjct: 49 GRMPTLEMTNEKFARMFRTTLSSMLRKV----VAVNSMSVDMIKFGEFLKTLPVPTSLHI 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + N + ++ TL++ L G + + + ++ R + +E L K+ I + Sbjct: 105 FRMEPLRGNAIFVMESKVIFTLVDVLFGGAGKELFKVEGREFTAIETNLIKKVILSALSD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + T + + + + V ++ + +E + L IP T Sbjct: 165 LEKAWKTMHDIRVIYQRSEINPQFAQIV--PPTDLVFVVDFEIEVEYITGILKLCIPYST 222 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQ 263 + + L + +SE D + + + ++D I L + KDVV LK G Sbjct: 223 V-EPIREKLQAGFQSEQLEVDKVWMKRFRDNLMLAHLDILIELGSTLISAKDVVNLKPGD 281 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 VI + G + G N +RI++ I D++ + Sbjct: 282 VITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISE-IVQDKEVMD 329 >gi|238785486|ref|ZP_04629469.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] gi|238713588|gb|EEQ05617.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] Length = 334 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 98/303 (32%), Gaps = 12/303 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + +E I+ ++ L + + DI+ Sbjct: 30 TETDVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPI 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L + +LV ++NL G ++ R Sbjct: 84 KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + + + +I N N+ V T Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTP 202 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243 ++ I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 203 FHVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319 Query: 304 INF 306 IN Sbjct: 320 INP 322 >gi|310767337|gb|ADP12287.1| flagellar motor switch protein [Erwinia sp. Ejp617] Length = 336 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] Length = 335 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 111/284 (39%), Gaps = 13/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ ++ + L F F ++ V IS S + I S + + + + Sbjct: 57 RSLTRMHENFARLLTTF----FSAQLRTYVQISVASADQLPYEEFIRSIPKMTILTVFEV 112 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + N+ +L+ +LG ++ ++ N L+ +E K+ + + L + Sbjct: 113 PPLDGRVLLEVNPNIAYAMLDRVLGGRGVSLNKIEN--LTEIETKIMSNLFEKAFSNLRE 170 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + P L DF + + NE V I++N I + + + IP +L+ Sbjct: 171 AWESVADIDPMLTDFEVNPQFLQMVS--PNETVVVISLNTQIGDTSGMINICIPH-VVLE 227 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + + + + ++ Q V + + ++++ + L +G V Sbjct: 228 PIIPKLSVHYWMQTQKKAREPEEVATLQKRLKQTKVPMIAELGTSTISIQEFLQLSVGDV 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I + ++ + + G++ K I+I D I + Sbjct: 288 IQLDQTVRDPLVIKVGDVPKFIGQPGKMNKRLAIQILDVIKGED 331 >gi|296103565|ref|YP_003613711.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058024|gb|ADF62762.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 334 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVASFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINP 323 >gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] Length = 327 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 103/285 (36%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + + + +S ++ + + Sbjct: 52 RTLEIIFEHFGRLLATNLPAYLRKS----VSVDVVNSEVVIYSEFSNALSNPVLLGVVGM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N + ++NL +++ LLG + + R S +E + +R ++ + Sbjct: 108 QPLSGNIIMEMASNLGFAIVDRLLGGAGNS--LDKERDFSEIELSILERIFTVCVNLMQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + +P LE + + + TIN+ + +V + +P T L+ Sbjct: 166 PWENVVKVNPRLERIETNSQFAQIISPSETIAIVTINLKI--GDVEGLVNICLPFAT-LE 222 Query: 209 TTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + L+++ N E D + + + + K ++ D L+IG + Sbjct: 223 PVMDKLNTKYWFSNMQEKDTNTYEDAIETVIDKAMIPVKAVLGTSKISVSDFANLQIGDI 282 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + + + G Y +R+T+ I + + Sbjct: 283 IRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVTEVIRKESE 327 >gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 332 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 105/289 (36%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + +L F ++ V I+ + + I S + + + Sbjct: 53 RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N+ +L++LLG + ++ +L+ +E + +R ++ L + Sbjct: 109 EPLEGRMVMEVHPNVAYAMLDHLLGGVGVSPSKIN--ALTEIETIVMERIFSKAFDSLQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T + P LE + + NE + I+++ I + L IP +++ Sbjct: 167 AWKTVVDLQPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVIE 223 Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS + +Q + + ++ + Q + + T+ + + L +G V Sbjct: 224 PIMPRLSVHSWFVSQKKSRAPEEVEALQFRLNQAKLPFVAELGSSHITVHEFLNLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + K Y+ G V ++I + ++ ++ Sbjct: 284 ITLQKPVNEPLKIRIGDKYKYTGSPGTVRGKMAVQINEPVSEGEEEYDE 332 >gi|92114085|ref|YP_574013.1| flagellar motor switch protein FliM [Chromohalobacter salexigens DSM 3043] gi|91797175|gb|ABE59314.1| flagellar motor switch protein FliM [Chromohalobacter salexigens DSM 3043] Length = 338 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P P R+ + I + + + M DI+ S + Sbjct: 36 KVRPFDPAKQHRIIRERLHALDI------INERFARQFRVALFNLMRRSADITVESVRYQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +S + + ++ + + +LV +++NL G + + R + Sbjct: 90 SYSEFSRNLPVPTNLNLITMKPLRGSALVVFPPSLVFMVVDNLFGGDGRFLTKSEGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + ++ + ++ N NE V ++ Sbjct: 150 RTEQRIIHRMLKMALEGYSESWKSVYPLDIEYTR-SELQVKFANITNSPNEIVVNSTFHV 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + N++S F + IP + I S + ++ + A + +V + Sbjct: 209 EVGNLSSEFNICIPYSMIEPIRDILASPLHDTHPDEEQQWEARMAHEIRHSSVELTADFV 268 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+DV L +G +IP E +S +G + +C+ G +R+ I Sbjct: 269 DIPLRLRDVTQLSVGDIIPIELPE--AVNVSVDGIPVMTCDYGSQKSQRALRVRHLIEH 325 >gi|238794009|ref|ZP_04637627.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC 29909] gi|238726641|gb|EEQ18177.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC 29909] Length = 334 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 99/300 (33%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTK