BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (318 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 318

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI
Sbjct: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP
Sbjct: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF
Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV
Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI
Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300

Query: 301 TDRINFDQKSLKNFLHKR 318
           TDRINFDQKSLKNFLHKR
Sbjct: 301 TDRINFDQKSLKNFLHKR 318


>gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/317 (65%), Positives = 254/317 (80%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           MR +   K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++
Sbjct: 1   MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SY + QSGKFSHI+HSFKE FVF + SL+  SSN FIGCSNNLVI LLE LL AS ET  
Sbjct: 61  SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           + +NRSLST+EKKLA   + +I+ VL+QCIST Q +   L++ Y++D+LK+NTN LSNEF
Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS    ED  D     TY+++V
Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I++RINL+K TLKDV+ LKIGQV+PFL +EK  AIL+ANGKEIYSCELGR+GKNYT+RI
Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300

Query: 301 TDRINFDQKSLKNFLHK 317
            DRINFDQ+SL+NFLHK
Sbjct: 301 QDRINFDQESLRNFLHK 317


>gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 316

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 169/304 (55%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E 
Sbjct: 73  LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   + +D   +      +EF   INM++T+  
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEFAAAINMSITLAG 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F LI+PQ  LLKT +     + ++  +S +  +    +  + +V ++ +I L+  T
Sbjct: 193 IVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHVTLEAKIRLQDLT 252

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312

Query: 313 NFLH 316
           + ++
Sbjct: 313 HLMN 316


>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 316

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 168/304 (55%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E 
Sbjct: 73  LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   Y  D   +      +EF   INM++T+  
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLAG 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F LI+PQ  LLKT +     + ++ + S +  +    +  + +V ++ +I L+  T
Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312

Query: 313 NFLH 316
           + ++
Sbjct: 313 HLMN 316


>gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512]
          Length = 314

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 168/304 (55%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 11  MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 70

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           ++     N     A+L +WS N  + C N  VITL+E+LLGA+ ETI +  +R LS +E 
Sbjct: 71  LVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRLLSIIEL 130

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T+  
Sbjct: 131 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINMSLTLAG 190

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F LI+PQ  LLKT + +   + ++   S +  +    +  + +V ++ RI L+  T
Sbjct: 191 IVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARIRLQDLT 250

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 251 LRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 310

Query: 313 NFLH 316
           + ++
Sbjct: 311 HLMN 314


>gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
 gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
          Length = 314

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M  QS H   + + P+L A+LTG LGD  T+ K+ ++ G +Y +FLP I K +  LDV +
Sbjct: 1   MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
            Y  C+SG  S ++     N      SL +WS NF +GC    V+TL+E+LLGA  ETI 
Sbjct: 60  GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R LS +E  L+     +I+ VL   ++ T    P L+  Y+I+         +++F
Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              I M +++    S  V+I+PQ  LL+T + +  ++N S +      +    +  +  V
Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSASTGA-WAEQLNEQVRRSQV 238

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ RI L+  TL  +  L +G VIPF+        +SAN K++Y CE GR G+NYT+R+
Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + L++ ++
Sbjct: 299 KDTVNSDDELLRHLMN 314


>gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
 gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
          Length = 316

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 167/304 (54%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           ++     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +  +R LS +E 
Sbjct: 73  LVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T+  
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEFAAAINMSLTLAG 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F LI+PQ  LLKT +     + ++   S +  +    +  + +V ++ RI L+  T
Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQDLT 252

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312

Query: 313 NFLH 316
           + ++
Sbjct: 313 HLMN 316


>gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4]
 gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4]
          Length = 319

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 169/304 (55%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P+   LLARLTG LGD K++EK+    G LY +FLP +F  + +L +++ Y   +SG   
Sbjct: 15  PMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLMR 74

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
            +I S  +NFV +  SL +WS NF + C N  VITL+E LLG   E I +   R LS +E
Sbjct: 75  DLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNIE 134

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++ T    P  E  ++ +   +       EF   ++M++ + 
Sbjct: 135 LDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKLG 194

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LIIPQ+TLLKT + +  S+N+     ++  +  A +  +  V ++ RI+L+  
Sbjct: 195 KITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQSL 254

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           +L  V  L  G VIPFL +      +SANG+++Y+CE GR G +YT+R+    + D + L
Sbjct: 255 SLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSELL 314

Query: 312 KNFL 315
           ++ +
Sbjct: 315 RHLM 318


>gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42]
 gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42]
          Length = 316

 Score =  208 bits (530), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 165/303 (54%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI S+ G +Y +FLP I K +  LDV +SY  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTVSYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           ++     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI +   R LS +E 
Sbjct: 73  LVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIEEPAERLLSVIEL 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T+  
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEFAAAINMSITLAG 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F LIIPQ  LLKT +     + ++   S +  +    +  + +V ++ +I L+  T
Sbjct: 193 IVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDLT 252

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L  G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIR 312

Query: 313 NFL 315
           + +
Sbjct: 313 HLM 315


>gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 316

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 167/304 (54%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGDK  + KI SS G +Y +F P + K +  L+V ++Y  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTVNYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I     N      +L +WS N  I C N  VITL+E+LLGA+ +TI +  +R LS +E 
Sbjct: 73  LIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIEEPADRLLSIIEM 132

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA     +I+ VL   ++      P+L   + ++   +      +EF   INM++T+  
Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEFAAAINMSITLAG 192

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + S F L++PQ  LLKT +     + ++   S +  +    +  + +V ++ +I L+  T
Sbjct: 193 IVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D + ++
Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312

Query: 313 NFLH 316
           + ++
Sbjct: 313 HLMN 316


>gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
 gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3]
 gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
          Length = 319

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 165/301 (54%), Gaps = 2/301 (0%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LLA+LTG L D+KTI K+ S +G+LY +FLP IF  +  + +D+ Y   +SG  + +I +
Sbjct: 18  LLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTDLIAN 77

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
              NF  +  SL +W  NF +   N  VI L+E +LGA+ +TI +   RSLS +E  LA 
Sbjct: 78  IGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIELDLAA 137

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
             + +I  VL   ++        ++  +  +        ++  +  T+ M + I  V+S 
Sbjct: 138 MVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGKVSSE 197

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F LI+PQ  LLKT++ +  +  ++  +  + +D  + +  +  V ++ RI L+  TL+ +
Sbjct: 198 FALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLTLRTI 257

Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             L  G VIPF  L ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + L++ 
Sbjct: 258 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 317

Query: 315 L 315
           +
Sbjct: 318 M 318


>gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
 gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
          Length = 319

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + +I +
Sbjct: 18  LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 77

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E  LA 
Sbjct: 78  VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 137

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
             + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  V+S 
Sbjct: 138 MVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 197

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  TL+ +
Sbjct: 198 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 257

Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             L  G VIPF  L ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + L++ 
Sbjct: 258 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 317

Query: 315 L 315
           +
Sbjct: 318 M 318


>gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM
          Length = 321

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + +I +
Sbjct: 20  LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 79

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E  LA 
Sbjct: 80  VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 139

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
             + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  V+S 
Sbjct: 140 MVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 199

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  TL+ +
Sbjct: 200 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 259

Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             L  G VIPF  L ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + L++ 
Sbjct: 260 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 319

Query: 315 L 315
           +
Sbjct: 320 M 320


>gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens]
 gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens]
          Length = 321

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + +I +
Sbjct: 20  LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 79

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E  LA 
Sbjct: 80  VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 139

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
             + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  V+S 
Sbjct: 140 MVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 199

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  TL+ +
Sbjct: 200 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 259

Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             L  G VIPF  L ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + L++ 
Sbjct: 260 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 319

Query: 315 L 315
           +
Sbjct: 320 M 320


>gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           medicae WSM419]
 gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           medicae WSM419]
          Length = 315

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 155/299 (51%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LLAR+ G LGD K I++++  L  ++ + LP + + +   DV I+Y   ++G  + ++  
Sbjct: 16  LLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAGFRAGLRNELVAG 75

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +    SL +W ++F IGC + ++I L+E LLGA    I +   RSLS +E  +A 
Sbjct: 76  LGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAPRSLSKIEIDVAL 135

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                I+ VL   ++      P +   Y+     K    L + +  +I+M + +  V S+
Sbjct: 136 PVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASIDMTIGLGPVLST 195

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F +I+PQ TLLKT  +S     K +N   +  +    +  +  V ++ RI L+  TL  +
Sbjct: 196 FSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTI 255

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D    +Q  L++ +
Sbjct: 256 ARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTHGSEQDILRHIM 314


>gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti AK83]
 gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM
 gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti AK83]
          Length = 315

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 156/299 (52%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y   ++G  + +I +
Sbjct: 16  LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   RSLS +E  +A 
Sbjct: 76  LGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                I+ VL   ++      P +   Y+     K    L + F  +I+M + +  V S+
Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLST 195

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ RI L+  TL  +
Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D    +Q  L++ +
Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314


>gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti BL225C]
 gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti BL225C]
          Length = 315

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 156/299 (52%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y   ++G  + +I +
Sbjct: 16  LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   RSLS +E  +A 
Sbjct: 76  LGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                I+ VL   ++      P +   Y+     K    L + F  +I+M + +  V S+
Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASIDMTIGLGPVLST 195

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ RI L+  TL  +
Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D    +Q  L++ +
Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314


>gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti]
          Length = 315

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 156/299 (52%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y   ++G  + +I +
Sbjct: 16  LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNDLIAA 75

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   RSLS +E  +A 
Sbjct: 76  LGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                I+ VL   ++      P +   Y+     K    L + F  +I+M + +  V S+
Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASIDMTIGLGPVLST 195

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ RI L+  TL  +
Sbjct: 196 FSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D    +Q  L++ +
Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314


>gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
 gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
          Length = 315

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 155/299 (51%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LLAR+TG LGD KTI + +  LG+++ + LP++ K++   D+ I Y   + G  + +I  
Sbjct: 16  LLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAGVKMGFRNELIAD 75

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             E  + S  SL +W + F IGC + ++I L+E LLGA    I +   R+LS +E  +A 
Sbjct: 76  LGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLPRALSKIEIDVAV 135

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               +I+  +   +       P +   ++          L + +  +I+M   +  V S+
Sbjct: 136 PVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASIDMTFGLGPVLST 195

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           F +IIPQ  LLKT ++   +  ++E+   D  +    +  +  V ++ RI L+  TL  +
Sbjct: 196 FSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEARIQLESLTLDTI 255

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
             L+ G VIPF   +     ++ANG+++Y CE GR G  YT+R+ D    +Q  L++ +
Sbjct: 256 SRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314


>gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti]
          Length = 258

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 122/237 (51%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y   ++G  + +I +
Sbjct: 16  LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +    SL +W ++F +GC   ++I L+E LLG +  +I +   RSLS +E  +A 
Sbjct: 76  LGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPPRSLSKIEIDVAL 135

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
              ++I+ VL   ++      P +   Y+     K    L + F  +I+M + +  V S+
Sbjct: 136 PVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLST 195

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
           F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ RI L+  TL
Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTL 252


>gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56]
          Length = 209

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 112/208 (53%)

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
           +E+LLGA+ +TI +  +R LS +E  LA     +I+ VL   ++      P+L   +  D
Sbjct: 1   MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
              +      +EF   INM++T+  + S F LI+PQ  LLKT +     + ++   S + 
Sbjct: 61  TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +    +  + +V ++ RI L+  TL+ +  L +G VIPF    +    +SAN KE+Y C
Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180

Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFL 315
           E GR G+NY +R+ D +N D + +++ +
Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLM 208


>gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5]
          Length = 188

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 97/187 (51%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T
Sbjct: 2   IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +  + S F LI+PQ  LLKT + +   + ++   S +  +    +  + +V ++ RI L+
Sbjct: 62  LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D +
Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181

Query: 310 SLKNFLH 316
            +++ ++
Sbjct: 182 LIRHLMN 188


>gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 315

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 127/306 (41%), Gaps = 2/306 (0%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +T    P LL R+ G  GD   IE    SL       L + F+   ++ +       Q G
Sbjct: 11  DTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSARPGEIQQG 70

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
               ++  F ++ VF    +  WS +    C   LVI ++E LLG S      +  R LS
Sbjct: 71  SRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELDIAARPLS 130

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E  ++     Q++  L +  S    +         +D  +   +   +     I + +
Sbjct: 131 GIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKPM-LDIPEAEDDPKPDFHAAAITLEL 189

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
              +V +   LI+PQ  LLKT  I+ S +N      +D  +    +  +  +N+   + L
Sbjct: 190 QFGSVVTPLTLILPQSILLKTKPIT-SKKNAPNAVDDDWAERLNARVSRSQINLQAAVAL 248

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               + ++  L++G +I F         LSANGK +Y+C LG+ G  Y +++      D+
Sbjct: 249 APLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVEGDAGPDE 308

Query: 309 KSLKNF 314
               +F
Sbjct: 309 NWRSDF 314


>gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771]
          Length = 169

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 4/144 (2%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 13  MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTVNYLGCEIGYKNH 72

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I     N     A+L +WS N  + C N  VITL+            +  +R LS +E 
Sbjct: 73  LIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDREPADRLLSIIEL 132

Query: 133 KLAKRTIAQISAVLNQCISTTQES 156
            LA     +I+    +C +  Q +
Sbjct: 133 DLAVMVFDKIA----KCCARGQRA 152


>gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
 gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
          Length = 303

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 23/268 (8%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S  S +SG F  ++  ++ N V        W  +  +G   + V T++E LLGA     P
Sbjct: 48  SLMSVESGLFGDLLEPYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPP 107

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174
               R+ S++E ++A+ T  QI   L    +    ++  LE      DF  I        
Sbjct: 108 VEEARNFSSIELRIAQMTFEQIGKALEAAFALVSVATLKLERTETRMDFAII-------G 160

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-----LID 229
           R SN+ V    +   + N      LIIPQ  +L     SLS     E+ S D      I 
Sbjct: 161 RRSNKAVAAKFLLQAL-NRGGEMFLIIPQ-AVLNPMRQSLSKVLTGESTSRDPRWEKQIS 218

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
              RKT    V +   +  +  TL ++  LK+GQV+      ++   L  N + ++ C++
Sbjct: 219 TEVRKT---EVTLRAVLEERTLTLGEIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQV 275

Query: 290 GRVGKNYTIRITDRINFDQKSLKNFLHK 317
           G+    Y +R+ D+I+ D++ +   L +
Sbjct: 276 GQANGAYVLRVEDQIDQDKEFMDGVLAR 303


>gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
 gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
          Length = 321

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 7/259 (2%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++  S  + +    +  +++  V +      W +   +G     + +++E LLG   E  
Sbjct: 65  LAVQSVSNERIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEE 124

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSN 178
           P L +RSL+ VE++LA R   + +  L        ++S  +E   + +++ +  T R SN
Sbjct: 125 PFLEDRSLTNVEQRLAYRMFEEAATALETAFEAIADTSLKVERLENRMEFAQ--TGRKSN 182

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY 236
             V    M   I        +IIPQ  L  L+  L  + S  +   +       F ++  
Sbjct: 183 PCVLA-KMTAEIIGREGEIFIIIPQSVLNPLRENLTQVLS-GEVAGRDTRWTKQFQQEVQ 240

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +  V +   +  ++ TL++V   ++G V+      KT   L  N + +++C LG+V  +Y
Sbjct: 241 RTEVKLTAILEEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSY 300

Query: 297 TIRITDRINFDQKSLKNFL 315
           T+R+ + I  + + L + L
Sbjct: 301 TVRVEELIEQEGELLDDIL 319


>gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
 gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
          Length = 335

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 17/263 (6%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +SG+F   + ++  N V      + W  +  +G   + + T++E L G+     P
Sbjct: 81  SLSGVESGRFGEFLDAYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPP 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174
               R+ S +E ++A+    Q+   L        +++  LE      +F  I        
Sbjct: 141 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERTETRMEFAVI-------G 193

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232
           R SN+ V    +   + N      LIIPQ T+L     +L+     E+ + D       A
Sbjct: 194 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALAKVLTGESAARDPRWAQQIA 251

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  +  V +   +  +  TL ++  LK+GQV+       T   L  N + ++ C  G+ 
Sbjct: 252 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 311

Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
              Y +R+ D IN +++     L
Sbjct: 312 QGAYVLRVEDAINPEKEGGHGLL 334


>gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
 gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
          Length = 319

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 126/268 (47%), Gaps = 19/268 (7%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           IS +  ++ +   ++  F+ N + +      W +   +G   + + TL++ L GA     
Sbjct: 62  ISVSYVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEP 121

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISA-VLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLS 177
           P    R  S +E ++A RT+ +++A  L +  +   E++  +E     +D+      R +
Sbjct: 122 PIDDERPFSNIETRIA-RTMFEVAAKALAESFAPIAETTLKIERIESRMDF--AVVGRRN 178

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI-----SLSSQNKSENQSEDLIDP 230
           N  V    +   I      F+ ++P  TL  L+  L       +SS++K   Q       
Sbjct: 179 NPAVVARLLQQAIGRGGEVFI-VMPHSTLNPLRQRLSQVLSGEMSSRDKQWTQH------ 231

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
           F  +  +  V ++  +  ++ +L D+  L++GQVI      ++   L+ N + +++C+LG
Sbjct: 232 FHNEIQRTEVKLEAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQLG 291

Query: 291 RVGKNYTIRITDRINFDQKSLKNFLHKR 318
           ++  +YT++I + I+ ++K L + L  R
Sbjct: 292 QLNGSYTLQIDELIHEEEKDLFDDLRNR 319


>gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
          Length = 344

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 5/257 (1%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +SG+F   + ++  N V        W  +  +G   + + T++E L G+     P
Sbjct: 90  SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 149

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R+ S +E ++A+    Q+   L        +++  LE   +         R SN+ 
Sbjct: 150 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERM-ETRMEFAVIGRRSNKA 208

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQL 238
           V    +   + N      LIIPQ T+L     +L      E+ + D    +  A +  + 
Sbjct: 209 VQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKT 266

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V +   +  +  TL ++  LK+GQV+       T   L  N + ++ C  G+   +Y +
Sbjct: 267 TVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVL 326

Query: 299 RITDRINFDQKSLKNFL 315
           R+ + IN +++     L
Sbjct: 327 RVEESINPEKEGGHGLL 343


>gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5]
          Length = 98

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 48/82 (58%)

Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
          + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+ G  +H
Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72

Query: 73 IIHSFKENFVFSQASLSSWSSN 94
          +I     N     A+L +WS N
Sbjct: 73 LIDDLSANVTLVDATLRNWSQN 94


>gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
 gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
          Length = 340

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +SG+F   + ++  N V        W  +  +G   + + T++E L G+     P
Sbjct: 86  SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 145

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174
               R+ S +E ++A+    Q+   L        +++  LE      +F  I        
Sbjct: 146 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERMETRMEFAVI-------G 198

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232
           R SN+ V    +   + N      LIIPQ T+L     +L      E+ + D    +  A
Sbjct: 199 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIA 256

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  +  V +   +  +  TL ++  LK+GQV+       T   L  N + ++ C  G+ 
Sbjct: 257 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 316

Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
             +Y +R+ + IN +++     L
Sbjct: 317 QGSYVLRVEESINPEKEGGHGLL 339


>gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
          Length = 344

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +SG+F   + ++  N V        W  +  +G   + + T++E L G+     P
Sbjct: 90  SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 149

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174
               R+ S +E ++A+    Q+   L        +++  LE      +F  I        
Sbjct: 150 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERMETRMEFAVI-------G 202

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232
           R SN+ V    +   + N      LIIPQ T+L     +L      E+ + D    +  A
Sbjct: 203 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIA 260

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +  +  V +   +  +  TL ++  LK+GQV+       T   L  N + ++ C  G+ 
Sbjct: 261 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 320

Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
             +Y +R+ + IN +++     L
Sbjct: 321 QGSYVLRVEESINPEKEGGHGLL 343


>gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099]
 gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti
           MAFF303099]
          Length = 315

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 130/308 (42%), Gaps = 21/308 (6%)

Query: 10  TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           TSP  P     +++ RL G  G+   +      +       L K    ++ + V +   +
Sbjct: 2   TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  + +       + F  +  + S+ S    +      +  ++  L G   ET      
Sbjct: 62  VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  ++     Q++  LN   S  +     L     +   +   + L +     I
Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALNG--SGRRSLDLRLPVPRAMSGTEAKRHVLRDGAALRI 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-----FARKTYQLN 239
            + ++    + +  + +PQ        I L+S++ + + + D   P     F+ +  +  
Sbjct: 180 VLGISTPADSGTVTVTMPQR-------IVLASRDSAASTAGDDHGPSWRERFSEEVMRST 232

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V ++  + L + TL D+ +L++GQVI F    ++ A LSA G+ ++ CE G++G+NYT+R
Sbjct: 233 VALEATMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVR 292

Query: 300 ITDRINFD 307
           I  R  FD
Sbjct: 293 I--RHPFD 298


>gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 313

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 31/269 (11%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           + +S  + +   I+ +++ N V +   + +W S   +G     + TL+E   G      P
Sbjct: 58  TVSSIGTERIGDILDAYENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPP 117

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174
            +  R LS +E KLA+     +   L    ST  E+    E      DF  I        
Sbjct: 118 NIEKRPLSNIEIKLAQTIFDLLPKALQTSFSTISETVFKFERLETKLDFAVI------AP 171

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFA 232
           R +  F+T IN+ +   +      ++IPQ +L      +   Q    + + D +  DP  
Sbjct: 172 RNTFGFITRINLRILGRH--GEMFVVIPQSSL------NSIRQELGRDLANDAVVRDPRW 223

Query: 233 RKTYQ-----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            K  Q       V +   I      L D   LKIGQV+P     K+ A L  N + ++ C
Sbjct: 224 TKQIQNEISRTEVEVRAIIEDSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWC 283

Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           ++G+    YT+R+ D I  DQ+  K+F+ 
Sbjct: 284 QVGQEDGFYTLRVEDFI--DQE--KDFIE 308


>gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
          Length = 309

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 25/269 (9%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S ++ +S +F  I+  ++ N +        W S+  +G   + + T++E LLG+     P
Sbjct: 54  SLSNVESQRFGDILEPYESNAIAGIFQAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPP 113

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174
               RS S +E ++A+R   Q+   +    +   ++   LE      DF  I   ++N  
Sbjct: 114 LDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVADTPFKLERTELRMDFAVIG--RRNNQ 171

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETL------LKTTLISLSSQNKSENQSEDLI 228
            ++ +F+      +   N      ++IPQ  L      L   L+  +S   S    +   
Sbjct: 172 AVAAKFL------LQALNRGGEMFIVIPQSVLNPMRQSLARILVGETSARDSRWTRQ--- 222

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
              A +  +  V +   +  K   L ++  L +GQV+      ++   L  N ++++ C+
Sbjct: 223 --IAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRVKLVGNDRDLFWCD 280

Query: 289 LGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           +G+      +R+   I+ DQ+ + + L +
Sbjct: 281 VGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309


>gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
 gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 110/265 (41%), Gaps = 17/265 (6%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +S ++G+   ++  ++   V     +  W S+  +G   + V T++E L GA     P
Sbjct: 54  SLSSIETGRIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPP 113

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQC---ISTTQESSPNLEDFYDIDYLKKNTNRLS 177
               RS S +E ++++    Q+   L+     +S TQ      E   D   + +  N   
Sbjct: 114 VDDERSFSNIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQETRMDFAVIGRRNN--- 170

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
                T    +   N      +IIPQ  L      +L+    +E    D   P   K  +
Sbjct: 171 --LAVTAKFLLQALNRGGEMFVIIPQSALTPMRQ-ALARTTPAETSGRD---PIWTKQIR 224

Query: 238 LNVN---IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
             VN   +  R  L++    L ++   K+GQV+      +T   L +  + ++ C LG+ 
Sbjct: 225 DEVNRTQVKVRAILEERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQA 284

Query: 293 GKNYTIRITDRINFDQKSLKNFLHK 317
              Y +R+ ++IN +Q+ + + L +
Sbjct: 285 EGAYVLRVEEQINLNQEFVDDILPR 309


>gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
 gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
          Length = 319

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 44  KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103
           + +  + ++K      IS +  ++ +   ++  F+ N + +      W +   +G   + 
Sbjct: 46  RLMADVMRQKSPSPSYISVSYVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDF 105

Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA-VLNQCISTTQESSPNLED 162
           + TL++ L GA     P    R  S +E ++A RTI +I+A  L +  +   E++  +E 
Sbjct: 106 IFTLVDVLFGADGTEPPIDEERPFSNIETRIA-RTIFEIAAKSLAESFAPIAETTLKIER 164

Query: 163 FYD-IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK 219
               +D+      R +N  V    +   I      FV ++P  TL  L+  L  + S   
Sbjct: 165 IESRMDF--AVVGRSNNPAVVGRLLQQAIGRGGEVFV-VLPHATLNPLRQALSQVLSGEM 221

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           S  + +     F  +  +  V ++  +  ++  L ++  LK+GQVI      ++   L+ 
Sbjct: 222 S-GRDKQWTQHFHNEIQRTEVKLEAILEEREMHLGELSNLKVGQVIELQATARSPVTLAC 280

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318
           N + I++C+LG++  +YT++I + I+ ++K L + L  R
Sbjct: 281 NDQPIFTCQLGQLDGSYTLQIEELIHEEEKDLFDDLRNR 319


>gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 315

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 25/310 (8%)

Query: 10  TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           TSP  P     +++ RL G  G+   +     ++       L K     + + V +   +
Sbjct: 2   TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  + +       +NF  +     + S    +      +  ++  L G   +       
Sbjct: 62  VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  ++     +++  LN     + E    L     +  ++   + L +     I
Sbjct: 122 RDLSPLEADVSTMVFQEVAQALNGSGQRSLEL--RLPAPRAMSGIEARRHVLRDGAAIRI 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-------FARKTYQ 237
            + ++    + S  +++PQ        I L+ ++   + SE   DP       F+ +  +
Sbjct: 180 VLGISTPVDSGSITVMMPQR-------IVLAGRDGIASASE--ADPGTSWRARFSEEVMR 230

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V ++  + L + TL D+  L++GQVI F    ++ A L A G+ ++ CE G++G+NYT
Sbjct: 231 STVALEATMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYT 290

Query: 298 IRITDRINFD 307
           +RI  R  FD
Sbjct: 291 VRI--RHPFD 298


>gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum
           SL003B-26A1]
 gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum
           SL003B-26A1]
          Length = 314

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/309 (19%), Positives = 130/309 (42%), Gaps = 28/309 (9%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P+ P+L  R+     D   + + S+S  Y                   IS +  ++ +  
Sbjct: 31  PMLPVLFDRMARVFAD--AMRQKSTSPSY-------------------ISVSCIENERIG 69

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
            ++  ++ N + +      W +   +G   + + T+++ L GA     P    RS S +E
Sbjct: 70  DVLDEYEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEERSFSNIE 129

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTINMNMTI 190
            ++A+      +  L +  S   E++  +E     +D+      R +N  V    +   I
Sbjct: 130 TRIARSVFEVAAKALQESFSPIAETTLKIERVESRMDF--AVVGRRNNPAVVARLLLQAI 187

Query: 191 ENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
                 FV ++P  TL  L+  L  + S   S  + +     F  +  +  V +   +  
Sbjct: 188 GRGGEIFV-VMPHSTLNPLRQRLSQVLSGEMS-GRDKQWTQHFQTEIQRTEVRLQAVLEE 245

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           ++ TL ++  L++GQ+I      ++   L  N + I++C LG++  +YT+++ D I+ ++
Sbjct: 246 RELTLGEIANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVEDLIHLEK 305

Query: 309 KSLKNFLHK 317
             + + L +
Sbjct: 306 DIVDDLLSR 314


>gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella
           silvestris BL2]
 gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella
           silvestris BL2]
          Length = 314

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 27/241 (11%)

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
           +W S   IG  ++ + TL E L G      P    R LS++E +LA + +      L   
Sbjct: 88  AWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKALDLFGRALQSA 147

Query: 150 ISTTQESSPNLE------DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
            ST  +++  LE      DF  I           N F  T  + + I        ++IPQ
Sbjct: 148 FSTVSDTAFKLERVETRLDFAVIAP--------RNAFGVTAKIKLRILGRHGEMFILIPQ 199

Query: 204 ETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVN---IDTR--INLKKTTLKDV 256
             L          Q    N S+D    DP   +  +  +    I+ R  I  +   L D+
Sbjct: 200 AALNSV------RQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDI 253

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             LK+G ++       T   L  N + ++ C LG+    YT+RI + ++ +Q+ +   L 
Sbjct: 254 ADLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDEMLS 313

Query: 317 K 317
           +
Sbjct: 314 R 314


>gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110]
 gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110]
          Length = 313

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 110/255 (43%), Gaps = 13/255 (5%)

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +   II  ++ N V +      W S   I    + V T++E + G+     P    RS S
Sbjct: 66  RVGDIIKDYEANAVAAVLYAEQWDSRIIIMLDRDFVFTMVEAMFGSDGAEPPLDVERSFS 125

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E +L +    + +  L    + T   +  +E   +         R  N    +I  N+
Sbjct: 126 NIEIRLVQALFERFAKALQSAFAGTSNVTFRVERV-ETAMASLAIGRSGN---MSICANI 181

Query: 189 TIENV--ASSFVLIIPQETL--LKTTL--ISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            ++ +       LIIP   L  L+  L  + +S    S+ +  + ++    +T    V +
Sbjct: 182 MLQALYRGGQMFLIIPHSALNPLRQKLAHVVVSDGRASDPRWREQMESEVHRT---EVTL 238

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              ++ K  TL DVV  ++GQV+      +T A L +N + ++ C++G++   Y +++ D
Sbjct: 239 SAVLDEKMVTLGDVVKFQVGQVLELEATPRTLARLESNNQVLFWCQIGQLDGYYAMQVAD 298

Query: 303 RINFDQKSLKNFLHK 317
            ++  ++ + + L +
Sbjct: 299 PVDQKREFVDDILSR 313


>gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 315

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/305 (18%), Positives = 120/305 (39%), Gaps = 14/305 (4%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           +++ RL G  G+   +     ++       L K    +  + V +   + +  +      
Sbjct: 13  LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
              + F  +    S+ S    +      +  ++  L G   +       R LS +E  ++
Sbjct: 73  RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
                Q++  LN   S  +     L     +   +     L +     I + ++    + 
Sbjct: 133 TMVFQQVAQALNG--SGKRSLDLRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-----FARKTYQLNVNIDTRINLKK 250
           +  + +PQ  +L       +S++ +   S+D   P     F+ +  +  V ++  + L +
Sbjct: 191 TVTVTMPQRVVL-------ASRDGAVPVSDDDHGPSWRARFSEEVMRSTVALEATMPLAR 243

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            TL D+   +IG VI F    ++ A LSA GK ++ CE G++G+NYT+RI    +  Q  
Sbjct: 244 LTLGDLAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDF 303

Query: 311 LKNFL 315
           +   +
Sbjct: 304 IDGLM 308


>gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
 gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
          Length = 311

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 15/255 (5%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +   S + S I+  ++   + +     +W +   IG   + + T++E L GA     P
Sbjct: 56  SLSGVGSDRLSDIVDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPP 115

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNE 179
               R  S VE  +A+    +    L    S   + +  LE     +DYL     RL+N 
Sbjct: 116 LDMPRVFSNVEMHVAQALFERFGKALQSSFSRASDVNFTLERVETRMDYLA--VGRLNNM 173

Query: 180 FVTTINMNMTIENVASSFVLIIPQETL-----LKTTLISLSSQNKSENQSEDLIDPFARK 234
            V   N+ +   +      ++IP   L       + +++  S +   N S  L     R 
Sbjct: 174 AVCA-NILLQGLDRGGEMFIVIPHAALNPIRQALSQIVTGESASTDPNWSRQLHSEIKRT 232

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L   ++ R      TL +V    +GQVI       T   L  N + ++ C+LG++  
Sbjct: 233 EVVLKAVLEER----PFTLGEVAGFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNG 288

Query: 295 NYTIRITDRINFDQK 309
            Y++++ +  + DQK
Sbjct: 289 VYSLQVKE--SADQK 301


>gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis
           KC583]
 gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis
           KC583]
          Length = 323

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 225 EDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           E  +DP       ++  Q +V I+  +     TL +++ LK+GQV+P          L +
Sbjct: 226 EKRMDPLWTKRLRKEVSQAHVQIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRS 285

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             K +Y C LG++GKN++IR+TD I+ +++ +   +H
Sbjct: 286 GDKSLYKCSLGKIGKNFSIRVTDPIDEEKEMINELVH 322


>gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
 gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
          Length = 275

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 15/255 (5%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +   S + S I+  ++   + +     +W +   IG   + + T++E L GA     P
Sbjct: 20  SLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPP 79

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNE 179
               R  S VE  +A+    +    L    S   + +  L+     +DYL     R +N 
Sbjct: 80  LDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLDRVETRMDYLA--IGRPNNM 137

Query: 180 FVTTINMNMTIENVASSFVLIIPQETL--LKTTL---ISLSSQNKSENQSEDLIDPFARK 234
            V+   +   ++     F+ +IP   L  ++T L   ++  S +   N S  L     R 
Sbjct: 138 AVSAQILLQGLDRGGEMFI-VIPHAALNPIRTALSQIVTGESASTDPNWSRQLHSEIQRT 196

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L   ++ R      TL +V    +GQVI       T   L  N + ++ C++G++  
Sbjct: 197 EVVLRAVLEER----PFTLGEVAKFHVGQVIKLNATPNTMVRLECNNQRLFWCQMGQLNG 252

Query: 295 NYTIRITDRINFDQK 309
            Y++++ +  + DQK
Sbjct: 253 AYSLQVKE--SADQK 265


>gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA
           110]
 gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
          Length = 400

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 26/257 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S     S +F   ++S     V S      W +       +NL+ ++++ LLG    
Sbjct: 131 VEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWDNFGMATVDSNLIYSMIDVLLGGRRG 190

Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           T   ++  R  +T+E +L KR +  + A   Q        +      + ID L+ N    
Sbjct: 191 TSQLRIEGRPYTTIETELVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 244

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
             +R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         D
Sbjct: 245 AISRPANAAIL-VRLRIDMEDRGGNIELLLPYATIEPIRGVLLQMFMGEKFGR------D 297

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           P     FA +  Q  +++D  +      LK ++ LK+G  +P   R      +      I
Sbjct: 298 PVWEGHFATEIGQAEISVDAVLYEADIPLKQLMRLKVGDTLPLDMRADANVTVRCGDVTI 357

Query: 285 YSCELGRVGKNYTIRIT 301
               +GRVG    IR+T
Sbjct: 358 TEGRMGRVGDRVAIRVT 374


>gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
 gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
          Length = 343

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTGLITMEARLVFILVDNFFGGDGRF 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + +YL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMD-VEFEYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+    A
Sbjct: 188 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSLA 246

Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            K     ++V ID  I  ++ TLKDV+  K G +IP    E    +L       Y C+LG
Sbjct: 247 LKDEIMDIDVGIDATIVEQQITLKDVMEFKAGDIIPVELPEHI--VLRVEDLPTYRCKLG 304

Query: 291 RVGKNYTIRITDRI 304
           +   N  +RIT++I
Sbjct: 305 KTRDNLALRITEKI 318


>gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33]
 gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 316

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQGVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus
           trichosporium OB3b]
 gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus
           trichosporium OB3b]
          Length = 339

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%)

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           +G     V  ++E L GA          R+L++VE +LA+  + +++  L    ++T  +
Sbjct: 120 LGAERKFVFAMVEGLFGADGSEPFYEEERALTSVEIRLARLVLDRLAKALQISFASTAGA 179

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
           +  L+             R  +  +      +T     S  ++  PQ  +L     +L++
Sbjct: 180 ALALDPVEPKPEPAGAARRSGSALIC--RFRLTAFGAESEALVTFPQ-GVLDPLREALAA 236

Query: 217 QNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              +  QS D +  +A++         V++   +  +  TL DV   ++GQ++       
Sbjct: 237 DPATTIQSADPL--WAQRMKDRITATEVSLTAVMERRDLTLGDVARFEVGQIVELPVSPT 294

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               L   G+ ++ CE+G+    YTIRI D ++ +Q+ + + L 
Sbjct: 295 GLIALECEGQTLFWCEIGQKDGAYTIRIADFVDKEQEFIDDMLG 338


>gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1]
 gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94]
 gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330]
 gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis
           ATCC 23365]
 gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445]
 gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686]
 gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94]
 gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1]
 gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1]
 gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
 gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis
           M292/94/1]
 gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
 gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330]
 gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis
           ATCC 23365]
 gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
 gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
 gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis
           M163/99/10]
 gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
          Length = 316

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2]
 gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2]
          Length = 253

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 102/239 (42%), Gaps = 20/239 (8%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 10  NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 69

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +A      ++  L++  +T   S P     D  D     ++   LS  F  T ++ +T  
Sbjct: 70  IANLLAGHLAGALDRVFNTG-SSQPLFAPGDCIDTADFDRDNFELSRLF--TCHIAVTAA 126

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246
                  L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  +
Sbjct: 127 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 182

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 183 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 241


>gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
           BNC1]
 gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
           BNC1]
          Length = 311

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 114/302 (37%), Gaps = 14/302 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P+  +++ RL G  GD + + + + +        L  IF+ K    + +     +  + +
Sbjct: 10  PMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLA 69

Query: 72  HI---IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     SF    V          +      + +L++++L   LG   +  P   +R  S
Sbjct: 70  ELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSIL---LGGDPDIPPSPLDRPPS 126

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
            +E  +A+      +  LN   S +     P  +        K+   R  +     I  +
Sbjct: 127 RIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPGDFKRFLVR--DGPGIRIAFS 184

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           +    V+      +P   +LK    +    + +  Q +     F  +  +  V +   I 
Sbjct: 185 LGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQR---FGEEVRRSTVQVTATIP 241

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           L K  L  +  LK GQV+           LS   + ++ CE GR+G+NYT+RI  R  FD
Sbjct: 242 LTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI--RQPFD 299

Query: 308 QK 309
            +
Sbjct: 300 DR 301


>gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
 gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
          Length = 348

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 20/239 (8%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 105 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 164

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +A      ++  L++  +T+  S P     D  D     +    LS  F  T  + +T  
Sbjct: 165 IANLLAGHLAGALDRVFNTS-SSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 221

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246
                  L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  +
Sbjct: 222 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 277

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 278 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 336


>gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1]
 gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1]
          Length = 316

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 16/237 (6%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           +A      ++  L++  +T   S P       ID    + + L    + T  + +T    
Sbjct: 133 IANLLAGHLADALDRVFNTGS-SQPLFAPGDCIDTADFDRDNLELSRLFTCRIAVTAAGK 191

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRINL 248
                L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  +  
Sbjct: 192 TGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFMQQ 247

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
              +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 248 GSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513]
 gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 316

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +      L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMLLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
 gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
          Length = 342

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 19/255 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +E+   + D  + DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMDV-EFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   ++V ID  +   + TL+DV+  K G VIP    E    IL       Y C++G
Sbjct: 246 LRDEIMDVDVGIDATVVEHQVTLRDVLEFKAGDVIPVELPEHI--ILKVEDLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRIN 305
           +  +N  ++I ++I 
Sbjct: 304 KTKENLALKICEQIQ 318


>gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
 gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
          Length = 400

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 26/271 (9%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +F   ++S     V S      W +       + L+ ++++ LLG   
Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVDSTLIYSIIDVLLGGRR 189

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173
             T  ++  R  +T+E  L KR I     VL+      +  SP     + ID L+ N   
Sbjct: 190 GNTQLRVEGRPYTTIETNLVKRLI---EVVLSDAEQAFRPLSPVR---FTIDRLETNPRF 243

Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228
              +R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         
Sbjct: 244 AAISRPANAAIL-VKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR------ 296

Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           DP     FA +  Q  V +D  +      LK ++ LK+G  +P   R      +      
Sbjct: 297 DPVWEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAVRCGSTM 356

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           +    +GRVG    IR+T  +     +L  F
Sbjct: 357 LTEGRMGRVGDRVAIRVTKNLRKPNTTLAMF 387


>gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 315

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 41/253 (16%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +I  TS +   +   + S +   + + A+   W S        +L+ ++LE +LG    T
Sbjct: 54  EIELTSLEYMPYEDAMESIQSPSLIAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRAT 113

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQIS-AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL- 176
             +   R L+ +E+KL +R +A++S   L QC+   Q+ SP     +DI  L+ N   + 
Sbjct: 114 TQEWKPRGLTAIEQKLGRR-LAELSLKGLAQCL---QDVSPVQ---FDIQSLESNPRSVM 166

Query: 177 ---SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-- 231
                     + M+M  E+ +    L++P  TL              +  S  L  PF  
Sbjct: 167 LAAPRTATVLVRMHMQFEDRSGHMALVLPYGTL--------------DEVSAQLAQPFLG 212

Query: 232 ARKTYQLNVNIDTRINLKKTT-------------LKDVVTLKIGQVIPFLHREKTCAILS 278
            R     N   D    +  TT             L +V+  K GQVI       T  +  
Sbjct: 213 GRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVGM 272

Query: 279 ANGKEIYSCELGR 291
            N + ++    G+
Sbjct: 273 VNAQPMFQAAFGQ 285


>gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
 gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
          Length = 341

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 74  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 133

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +E+   + D  + DYL    N  ++
Sbjct: 134 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMDV-EFDYLDSEVNPAMA 185

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+    A
Sbjct: 186 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 244

Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            K     + V +D  I  K+ +LKDV+  K G +IP    E    +L       Y C+LG
Sbjct: 245 LKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPE--YIVLRVEDLPTYRCKLG 302

Query: 291 RVGKNYTIRITDRI 304
           R  +N  + I ++I
Sbjct: 303 RSRENLALNIREKI 316


>gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
           700345]
 gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
           700345]
          Length = 342

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++ +  +  I     +  +   E           DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQ--------FDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   ++V ID  I   K TL++V+  K G VIP    E    IL       Y C++G
Sbjct: 246 LRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVELPEHI--ILKVEDLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRI 304
           +   N  ++I ++I
Sbjct: 304 KAKDNLALKICEKI 317


>gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi
           Nb-255]
 gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi
           Nb-255]
          Length = 401

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 26/257 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116
           V++S     S +F   ++S     V S      W +       ++L+ ++++ LLG    
Sbjct: 132 VEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRG 191

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174
           ++  ++  R  +T+E  L KR +  + A   Q        S      + ID L+ N    
Sbjct: 192 QSSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVS------FSIDRLETNPRFA 245

Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
              R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         D
Sbjct: 246 AITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------D 298

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           P      A +  Q  + +D  +   +  L+ ++TLK+G  +P   R      +      +
Sbjct: 299 PIWESHLATEIAQAQIAVDAVLYEAEIPLRQLMTLKVGDTLPLEMRPDASVAVRCGSVTL 358

Query: 285 YSCELGRVGKNYTIRIT 301
               +GRVG    IR++
Sbjct: 359 TEGRMGRVGDRVAIRVS 375


>gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
           23457]
 gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
           23457]
 gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28]
 gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90]
          Length = 316

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +     VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
           16M]
 gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str.
           Ether]
 gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
           16M]
 gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str.
           16M]
 gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
           16M]
 gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 316

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +     VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +A      ++  L++  +T+      +P   D  D     +    LS  F  T  + +T 
Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245
                   L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  
Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC2047]
          Length = 329

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 102 NLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +LV+ L++   G   H+    +  R  +  E+++ ++ ++Q+   + Q   T  +     
Sbjct: 125 DLVVNLVDRFFGGGVHDN--AIGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMD----- 177

Query: 161 EDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
               D +YL    N         +E V      + IE       + IP  ++L+    +L
Sbjct: 178 ---IDFEYLSNEENPAMIKAISPSEVVVLSTFEIKIEEKGGRIQVAIPY-SMLEPVREAL 233

Query: 215 SSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            S  + +N+  D    +   R     +V I  R+  +K TL++++  K G VIP    E 
Sbjct: 234 DSGVQVDNEYTDGNWAEALQRDLRYASVPISCRVAERKITLREILNFKAGDVIPIDMPE- 292

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             +IL ANG  IY   +G   ++  ++I  +I+
Sbjct: 293 -SSILMANGVPIYEAAVGASNEHLALKIKRQID 324


>gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis
           HAW-EB4]
 gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis
           HAW-EB4]
          Length = 342

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D    DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-QFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   ++V ID  I   K TLK V+  K G VIP    E    IL       Y C++G
Sbjct: 246 LRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVELPEYI--ILKVEDLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRI 304
           R  +N  ++I ++I
Sbjct: 304 RTKENLALKICEQI 317


>gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           anthropi ATCC 49188]
          Length = 317

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 11/220 (5%)

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           W S  ++     LV +++E + GA         +R    +E+K++      +++ L+Q  
Sbjct: 92  WGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGMLEQKISALLAGHLASSLDQVF 151

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +   ++     +  D     +     S  F   I++  T         L++P+ T     
Sbjct: 152 AANGQALFTAGECTDTAEFDRENFERSRLFACRIDV--TAAGKTGQVHLLLPRSTHKPMQ 209

Query: 211 LISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
               +   +  NQ+    DP +A+K  Q      + ++  I     TL  +  L+IGQV+
Sbjct: 210 DAVAAFLRRPMNQT----DPSWAKKMRQEVSRARIELEAFIQQGSMTLDALSMLEIGQVL 265

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                      L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 266 KLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVN 305


>gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
 gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
          Length = 401

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 26/257 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116
           V++S     S +F   ++S     V S      W +       ++L+ ++++ LLG    
Sbjct: 132 VEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRG 191

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174
           +T  ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N    
Sbjct: 192 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FSIDRLETNPRFA 245

Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
              R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         D
Sbjct: 246 AITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------D 298

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           P      A +  Q  + +D  +   +  LK ++ LK+G  +P   R      +      +
Sbjct: 299 PIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMALKVGDTLPLDMRPDASVAVRCGSVTL 358

Query: 285 YSCELGRVGKNYTIRIT 301
               +GRVG    IR++
Sbjct: 359 TEGRMGRVGDRVAIRVS 375


>gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
 gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
          Length = 403

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 109/261 (41%), Gaps = 26/261 (9%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +FS  ++S     V S      W +       ++L+ ++++ LLG   
Sbjct: 133 NVEVSLDRITSVRFSDYMNSIPLPAVLSVFKAEEWENFGLATVDSSLIYSMIDVLLGGRR 192

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174
            +T  ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N   
Sbjct: 193 GQTSMRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FKIDRLETNPRF 246

Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228
               R +N  +  + +++ +E+   +  L++P  T+  ++  L+ +    K         
Sbjct: 247 AAITRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMGEKFGR------ 299

Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           DP      A +  Q  +++D  +   +  LK +++LK+G  +P   R      +      
Sbjct: 300 DPIWEGHLATEITQAQISVDAVLYEAELPLKQLMSLKVGDTLPLEMRPDALVSVRCGSVI 359

Query: 284 IYSCELGRVGKNYTIRITDRI 304
           +    +GRV     IR+T ++
Sbjct: 360 LTEGRMGRVADRVAIRVTKQL 380


>gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch
           [Pelobacter carbinolicus DSM 2380]
 gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch
           [Pelobacter carbinolicus DSM 2380]
          Length = 331

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 25/226 (11%)

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           W   F       L   LLE+LLG + +    L  RSL+ +E  + + TIA     LN+  
Sbjct: 116 WRGVFIF--KEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTF 173

Query: 151 STTQ---------ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           +  +         ESS  L     I+ +  + + L+  FV T N      N+    VL++
Sbjct: 174 APLEKIESSLVKIESSTRL-----INIVPGDASVLAAHFVVTGN------NLEDEIVLVL 222

Query: 202 PQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           P   L  LK  +    S   SE+Q         ++  Q++V++  ++     T++D++  
Sbjct: 223 PMAMLDPLKEKMRE-GSAVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNF 281

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           K+G ++       +   + A G+  +    G       +RI+ RIN
Sbjct: 282 KVGDILDLGCAPSSPLQVRAAGQPKFQAIAGTHQGKKAVRISGRIN 327


>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
 gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
          Length = 323

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 36/289 (12%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  + G L    L  + +  M LD    +++     +   I+S     +    S 
Sbjct: 52  RTLELIHETYGRLVATSLSSLVRGSMRLD----FSAIDQVPYEEFINSLIPPAMIVIISW 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            +   +  +  + N+ + L++ LLG S   +P    R+ + +E  L  + + +    L +
Sbjct: 108 ENTGLSMVLEMNLNITLALVDRLLGGS--GLPPPSPRAPTDIENALIAKLVDRHLVALEE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIP 202
              T    S        + ++   TN        +NE V  I M++ I +++    L IP
Sbjct: 166 AWRTVYPVS--------LTFVGTETNPEFAQIVPANEMVVLITMDIGIGDLSGIMSLAIP 217

Query: 203 QETLLKTTLISLSSQN-----KSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TL 253
             +LL+  +  LS+Q      K+EN  E          YQ  LNV ++ ++ L      L
Sbjct: 218 Y-SLLEPIVNHLSAQRFFVKKKAENDIE------REYVYQHVLNVMVNLQVCLGHMHIPL 270

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +D++ L++G  +    +      +    K+ +    GRVGKN  I+IT+
Sbjct: 271 RDLINLRVGDTLLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITE 319


>gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
 gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
          Length = 342

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    +       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFNPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMD-VEFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+    A
Sbjct: 187 NIVSPTEVVVISSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245

Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            K     +NV +D  +   + TLKDV+ LK G +IP    E    IL       + C+LG
Sbjct: 246 LKDEIMDVNVGLDATVVEHQITLKDVMELKQGDIIPVELPEHI--ILRVEDLPTFRCKLG 303

Query: 291 RVGKNYTIRITDRI 304
           +   N  +R+  +I
Sbjct: 304 KARDNLALRVIQKI 317


>gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
 gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
          Length = 400

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 26/271 (9%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +F   ++S     V S      W +       + L+ ++++ LLG   
Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSTLIYSIIDVLLGGRR 189

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173
             T  ++  R  +T+E  L KR I  + A   Q               + ID L+ N   
Sbjct: 190 GNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVR------FTIDRLETNPRF 243

Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228
              +R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         
Sbjct: 244 AAISRPANAAIL-VKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR------ 296

Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           DP     FA +  +  V +D  +      LK ++ LK+G  +P   R      +      
Sbjct: 297 DPVWEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAVRCGNTM 356

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           +    +GRVG    IR+T  +     +L  F
Sbjct: 357 LTEGRMGRVGDRVAIRVTKNLRKPHTTLAMF 387


>gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
 gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
          Length = 357

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 20/271 (7%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           M  + ++S    Q  KF   +H+       +            I     LV  L++N  G
Sbjct: 70  MRRNAEVSINGVQMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFG 129

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E+++       I  +L       +ES   + D  + +YL    
Sbjct: 130 GDGRFQAKIEGREFTPTERRI-------IQLLLKTVFEDYKESWAPVMD-VEFEYLDSEV 181

Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
           N  ++N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+
Sbjct: 182 NPAMANIVSPTEVVVVSSFHIELDGGGGDFHITLPY-SMIEPIRELLDAGVQSDKQDTDM 240

Query: 228 IDPFARKTYQLNVNID--TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
               A +   ++V +D  T +  ++ TL+D++ +K G +IP    E    ++       +
Sbjct: 241 RWAKALQDEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMPEHL--LVRIEDLPTF 298

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             +LGR G N  +RI +RI    KS KN L 
Sbjct: 299 RGKLGRKGDNVAVRIEERIP-RPKSYKNELQ 328


>gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 400

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/258 (20%), Positives = 104/258 (40%), Gaps = 26/258 (10%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +F   ++S     V S      W +       ++L+ ++++ LLG   
Sbjct: 130 NVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRR 189

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174
            +T  ++  R  +T+E  L KR +  + A   Q        S      + ID L+ N   
Sbjct: 190 GQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243

Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228
               R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         
Sbjct: 244 AAITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------ 296

Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           DP      A +  Q  + +D  +   +  LK ++TLK+G  +    R      +      
Sbjct: 297 DPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMTLKVGDTLALEMRPDASVAVRCGSVT 356

Query: 284 IYSCELGRVGKNYTIRIT 301
           +    +GRVG    IR++
Sbjct: 357 LTEGRMGRVGDRVAIRVS 374


>gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
 gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
          Length = 375

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 113/273 (41%), Gaps = 27/273 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++   S     +S  + S +    F+         +  +  S +++  +++ LLG   E
Sbjct: 90  VEVKLISVDQLTYSEFVFSLENPTCFNLLESKGLEGHLILDLSPSIIFPIVDRLLGGGKE 149

Query: 118 TIPQLYNRSLSTVEKKLAKR-TIAQISAVLNQ----C---ISTTQ-ESSPNLEDFYDIDY 168
           +IP + +R L+ +E +L  R T+  I+ + N     C   +  TQ ES+P L        
Sbjct: 150 SIPSIPSRPLTEIELQLVSRITLLVINGLENAWHNVCSLGLKVTQIESNPQLVQIVP--- 206

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
                    NE +  ++  +T+  V     L IP  T+   +   LSS   S  Q + L 
Sbjct: 207 --------PNEVIVLVSFEITMGEVRGIMNLCIPFNTIEPLSG-KLSSDTWSAYQKKGL- 256

Query: 229 DPFARKTYQLNVN---IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           DP  R   +  ++   +   +NL  T  T +D+  L +G VI   H ++    +   G  
Sbjct: 257 DPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDVIMTEHPKEDGLEVVVEGCP 316

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           ++  + G V     IR+T  +   +  L+  L 
Sbjct: 317 MFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349


>gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           HaA2]
 gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           HaA2]
          Length = 401

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 108/254 (42%), Gaps = 18/254 (7%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +FS  ++S     V        W +       ++L+ ++++ LLG   
Sbjct: 131 NVEVSLDRITSVRFSDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 190

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173
            +   ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N   
Sbjct: 191 GQAAIRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVA------FSIDRLETNPRF 244

Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227
              +R +N  +  + +++ +E+   +  L++P  T+  ++  L+ +    K   +Q  + 
Sbjct: 245 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 302

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
               A +  Q ++++D  +   +  L+ ++ L++G  +P   R      +      +   
Sbjct: 303 -GHLATEIGQADISVDAVLYEAEVPLRQLMALQVGDTLPLDLRADALVAVRCGSVTLTEG 361

Query: 288 ELGRVGKNYTIRIT 301
            +GRVG    IR+T
Sbjct: 362 RMGRVGDRVAIRVT 375


>gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
           400]
 gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
           400]
          Length = 342

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +E+   + D  + +YL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMD-VEFEYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+    A
Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245

Query: 233 RKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V +   +N+   + TL+DV+  K G +IP    E    ++   G   Y C++G
Sbjct: 246 LRDEIMDVQVGFDVNVVEHEVTLRDVMGFKAGDIIPIDLPEHI--MMRIEGLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRI 304
           +   N  ++I+++I
Sbjct: 304 KSRDNLALKISEKI 317


>gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13]
 gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13]
          Length = 316

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 73  NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQK 132

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +A      ++  L++  +T   S P     D  D     +    LS  F  T  + +T  
Sbjct: 133 IANLLAGHLADALDRVFNTGS-SQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 189

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246
                  L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  +
Sbjct: 190 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 245

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                +L  +  L+IGQV+             A  ++++ C LG+ G ++T+++ D +N
Sbjct: 246 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304


>gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99]
 gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99]
          Length = 348

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 81  EVSINGVQMIKFGEYVHTLFVPTSLNMVKFSPLKGTGLITMEARLVFILVDNFFGGDGRF 140

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +E+   + D  + +YL    N  ++
Sbjct: 141 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMD-VEFEYLDSEVNPAMA 192

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D     A
Sbjct: 193 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDKRWSMA 251

Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            K     + V ID  I  ++  LKDV+  + G +IP    E    +L       Y C+LG
Sbjct: 252 LKDEIMDIKVGIDATIVDQEIALKDVMKFRAGDIIPVDLPEHI--VLRVEDLPTYRCKLG 309

Query: 291 RVGKNYTIRITDRI 304
           +   N  +RI ++I
Sbjct: 310 KSRDNLALRIIEKI 323


>gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
           2653]
 gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
           2653]
          Length = 348

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%)

Query: 80  NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
           N +F +A++        W  + ++     LV +++E + GA     P   +R    VE+K
Sbjct: 105 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQK 164

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +A      ++  L++  +T   S P     D  D     +    LS  F  T  + +T  
Sbjct: 165 IANLLAGHLADALDRVFNTG-SSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 221

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246
                  L++P+ T         +   +  +Q+    DP +A+K  Q      + ++  +
Sbjct: 222 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 277

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                +L  +  L+IGQV+             A  ++++ C LG+ G ++T+++ D +N
Sbjct: 278 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVN 336


>gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
 gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
          Length = 332

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/259 (16%), Positives = 99/259 (38%), Gaps = 28/259 (10%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 76  DVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q+   L++     +          D +Y+    N  ++
Sbjct: 136 -AKIEGREFTPTELRVVQMVLEQVFVDLHEAWKAVK--------LIDFEYINSEVNPSMA 186

Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N            F   ++      ++   + ++ P   +L   L     Q+ ++ + + 
Sbjct: 187 NIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIREILDAGL-----QSDTDERDDR 241

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            +        +  V+++  +  +  TL+++V LK+G +IP    E    I +ANG  ++ 
Sbjct: 242 WVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTMPE--VHIATANGVPMFQ 299

Query: 287 CELGRVGKNYTIRITDRIN 305
            ++G+   N  +RI D ++
Sbjct: 300 AKIGQCNNNLALRILDYVD 318


>gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB5]
 gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB5]
          Length = 400

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 106/254 (41%), Gaps = 18/254 (7%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +F   ++S     V        W +       ++L+ ++++ LLG   
Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173
            +   ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N   
Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVA------FSIDRLETNPRF 243

Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227
              +R +N  +  + +++ +E+   +  L++P  T+  ++  L+ +    K   +Q  + 
Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
               A +  Q  +++D  +   +  LK ++ L++G  +P   R      +      +   
Sbjct: 302 -GHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPLDLRADALVAVRCGSVTLTEG 360

Query: 288 ELGRVGKNYTIRIT 301
            +GRVG    IR+T
Sbjct: 361 RMGRVGDRVAIRVT 374


>gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           CGA009]
 gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           TIE-1]
 gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas
           palustris CGA009]
 gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           TIE-1]
          Length = 400

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 107/254 (42%), Gaps = 18/254 (7%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +F   ++S     V        W +       ++L+ ++++ LLG   
Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173
            +   ++  R  +T+E  L KR +  + A   Q        S      + ID L+ N   
Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243

Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227
              +R +N  +  + +++ +E+   +  L++P  T+  ++  L+ +    K   +Q  + 
Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
               A +  Q ++++D  +   +  L+ ++ L++G  +P   R      +      +   
Sbjct: 302 -GHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEG 360

Query: 288 ELGRVGKNYTIRIT 301
            +GRVG    IR+T
Sbjct: 361 RMGRVGDRVAIRVT 374


>gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1]
          Length = 335

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 44/78 (56%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           +V+I+  I     TL ++  L++GQV+           L +  K +Y C LG++G N++I
Sbjct: 257 HVSIEAFIQQGSMTLDELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGKMGTNFSI 316

Query: 299 RITDRINFDQKSLKNFLH 316
           R+TD I+ +++ +   +H
Sbjct: 317 RVTDPIDEEKEMIDELVH 334


>gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           DX-1]
 gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           DX-1]
          Length = 400

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 107/254 (42%), Gaps = 18/254 (7%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +F   ++S     V        W +       ++L+ ++++ LLG   
Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173
            +   ++  R  +T+E  L KR +  + A   Q        S      + ID L+ N   
Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243

Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227
              +R +N  +  + +++ +E+   +  L++P  T+  ++  L+ +    K   +Q  + 
Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
               A +  Q ++++D  +   +  L+ ++ L++G  +P   R      +      +   
Sbjct: 302 -GHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEG 360

Query: 288 ELGRVGKNYTIRIT 301
            +GRVG    IR+T
Sbjct: 361 RMGRVGDRVAIRVT 374


>gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
 gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
          Length = 331

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 28/258 (10%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +I  +  Q  KFS  I         +    +       I     LV T+++N  G + + 
Sbjct: 88  EIFISGIQVQKFSEYIQGLLVPTNLTIVRFNPLRGKALIVIDPRLVFTVVDNFFGGAGQF 147

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             Q   R  +  E ++ +  I  I   L +      E         D +Y+    N R +
Sbjct: 148 YNQTEGREFTPTEMRVVRIIIDMIFKDLKEAWKPVME--------LDFEYVGAEINPRFA 199

Query: 178 N-----EFVTTINMNMTIE------NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N     E +    +++ +E      N+A  + ++ P   LL   + S S +     Q+  
Sbjct: 200 NIIGPGEIIVISTIHVELEGGGGDVNIAMPYAMLEPIRELLDA-ISSDSGEVDGGWQA-- 256

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                  +  +  V+I++ +  K  T++DV+ LK G VIP    +    IL A G  ++ 
Sbjct: 257 ---ALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIPIDMPD--TVILKAEGIPVFE 311

Query: 287 CELGRVGKNYTIRITDRI 304
            ++G    NY I+I D++
Sbjct: 312 GKVGISDGNYAIQIIDKV 329


>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
 gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
          Length = 327

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 104/255 (40%), Gaps = 26/255 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     ++  + S   N  F+  SLS    N       ++   L++ LLG   E
Sbjct: 82  VEIEVVSVDQMTYAEFVLSLSNNVSFNVVSLSPLDGNAVFSLEPDIGFALIDRLLGGIGE 141

Query: 118 TIPQLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTT-----QESSPNLEDFYDIDY 168
           +     NR  + +E+ +     ++ + ++ +     I  +     QESSPN+        
Sbjct: 142 S--SNINRPFTDIEQSILLDVVRQAMEEMRSSWEPIIDISFEVVGQESSPNVVQIV---- 195

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---KSENQSE 225
                    +E V  +   + +          +P   +L+  L  + + +   +S+  +E
Sbjct: 196 -------APSEIVVLVVFEVKLGETTGIINWCLPV-IVLEPVLNKIGTHDILARSKKATE 247

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
           D I+  AR   ++ V ++ R+      ++D ++LK G ++    +      +  NG E Y
Sbjct: 248 DRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLLTLDKKVDDELPVFINGVEKY 307

Query: 286 SCELGRVGKNYTIRI 300
             +LGR G N  ++I
Sbjct: 308 GVKLGRKGYNKAVKI 322


>gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
           OM5]
 gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
           OM5]
          Length = 398

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/257 (19%), Positives = 107/257 (41%), Gaps = 26/257 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116
           V++S     S +F+  ++S     V +      W +       ++L+ ++++ LLG    
Sbjct: 129 VEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRG 188

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           +T  ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N    
Sbjct: 189 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 242

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
             +R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         D
Sbjct: 243 AISRPANAAIL-VRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGR------D 295

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           P      A +  Q  + +D  +   +  LK +++L++G  +P   R      +     ++
Sbjct: 296 PIWEGHLATEIAQAELYVDAVLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSVRCGDVKL 355

Query: 285 YSCELGRVGKNYTIRIT 301
               +GRVG    IR++
Sbjct: 356 SEGRMGRVGDRVAIRVS 372


>gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
 gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
          Length = 333

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/262 (18%), Positives = 100/262 (38%), Gaps = 31/262 (11%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 76  DVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q+   L +     +          D +Y+    N  ++
Sbjct: 136 -AKIEGREFTPTELRVVQMVLEQVFIDLKEAWKAVKA--------IDFEYINSEVNPSMA 186

Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N            F   ++      ++   + ++ P   +L   L     Q+ ++ + + 
Sbjct: 187 NIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIREVLDAGL-----QSDTDERDDR 241

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            +        +  V+++  +  ++ TL+D+V L+ G +IP    E    IL+ANG  ++ 
Sbjct: 242 WVRALQEDVMEARVDLEADLVRREVTLRDIVDLREGDIIPITMPEYN--ILTANGVPMFK 299

Query: 287 CELGRVGKNYTIRI---TDRIN 305
            +LG++  N  +RI    DR N
Sbjct: 300 TQLGQLNDNLAMRILGFVDRSN 321


>gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
 gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
          Length = 335

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 123/291 (42%), Gaps = 28/291 (9%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           KT+  I  + G L   +L    +    ++V     + +  +F    ++ + N +     +
Sbjct: 53  KTLSIIYENYGRLLSSYLSGTLRSYCKVEV----LTIEEQRFFEYSNALESNVLMGVLDM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  S ++   +++ LLG   E      +R  + +E +L ++ +  +  ++  
Sbjct: 109 KPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYEA--DRDYTDIEMQLLRQVVQTVCRLVGD 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL- 206
                    P   DF  ++   + +  +S NE V  + +++ I +V  +    IP   L 
Sbjct: 167 AWENVYALQP---DFVRLENNSRQSQLVSPNETVVIVMLDVEIRDVVGNISFCIPYVILE 223

Query: 207 -----LKTTLISLSSQNKSENQS---EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
                L T      S++K+ ++    E+L+    RK  Q+ + +   +   + TL + + 
Sbjct: 224 PVLEHLNTRYWFTESRSKTGDEQASRENLL----RKVRQIPIELRAVLGTARITLHEALQ 279

Query: 259 LKIGQVIPF-LHREKTCAILSANGKE-IYSCELGRVGKNYTIRITDRINFD 307
           L++G V+P   H ++  A+ S  GKE  +   LG    N  IR+ DRI  +
Sbjct: 280 LQVGDVVPLDQHLDEKAAVYS--GKEKWFEGTLGTWHNNRAIRV-DRIMLE 327


>gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C]
          Length = 322

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V I+  I     TL ++ TLK+GQ++P          L +  K +Y C LG++G +++IR
Sbjct: 245 VRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIR 304

Query: 300 ITD 302
           +T+
Sbjct: 305 VTN 307


>gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13]
          Length = 332

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 17/271 (6%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   + IS  S     +   I S  +  + +   ++       +  + 
Sbjct: 63  FARLLTTYFSAQLRTYIQISVASVDQLPYEEFIRSIPKMTILNVFEVAPLEGRVVLEINP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +   +L+  LG     + ++   SL+ +E KL             +   T  +  P L 
Sbjct: 123 TIAYAMLDRQLGGKGTGVNKV--DSLTEIETKLMTTLFEGAIENFGEAWDTIADIQPFLS 180

Query: 162 DFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS- 216
           D      L+ N   L     NE V  I+MN+TI  V     + IP   +L+  +  LS+ 
Sbjct: 181 D------LEVNPQFLQLVSPNETVIVISMNITIGEVTGMINICIPH-VVLEPVIPKLSAH 233

Query: 217 ---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
              + K++ + +  I    +      + + T +   + +  D++ + IG V+P   +   
Sbjct: 234 YWMEEKNKVRQDHEIATLEKAIRATALTVTTELGHSEISFSDLLNITIGDVLPLQQKIDE 293

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             I+  + K  +  ++G+V KN  ++I ++I
Sbjct: 294 PIIVKVDNKPSFYGQVGQVKKNMAVQILEKI 324


>gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 322

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V I+  I     TL ++ TLK+GQ++P          L +  K +Y C LG++G +++IR
Sbjct: 245 VRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIR 304

Query: 300 ITD 302
           +T+
Sbjct: 305 VTN 307


>gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
 gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 26/261 (9%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S     S +FS  + S     V S      W +       + L+ ++++ LLG   
Sbjct: 134 NVEVSLDRITSVRFSDYMSSIPLPAVLSVFKAEEWENFGLATVDSALIYSMIDVLLGGRR 193

Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174
            +   ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N   
Sbjct: 194 GQASMRVEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FKIDRLETNPRF 247

Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228
               R +N  +  + +++ +E+   +  L++P  T+  ++  L+ +    K         
Sbjct: 248 AAITRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMGEKFGR------ 300

Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           DP      + +  Q  +++D  +   +  LK ++ LK+G  +P   R      +      
Sbjct: 301 DPIWEGHLSTEIAQAEISVDAVLYEAEIPLKQLMRLKVGDTLPLELRADALVAVRCGNVT 360

Query: 284 IYSCELGRVGKNYTIRITDRI 304
           +    +GRV     IR+T ++
Sbjct: 361 LTEGRMGRVADRVAIRVTKQL 381


>gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
 gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
          Length = 331

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 11/246 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS    Q  ++S  +        F+  ++     N  I C  +L+  +++ L G   + 
Sbjct: 78  EISVGPVQVQRYSAFLRELAVPTSFNIMAVRPLRGNGMIVCEPSLIFGVIDTLYGGIGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  S  E+++  R +  IS    +           LE  Y    ++     ++ 
Sbjct: 138 QSRIEGRDFSATEQRIINRLVDVISDEYKKAWRGIYP----LELEYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V + +  + I  ++ +    IP  TL  ++  L S S+Q  S       ++   R+
Sbjct: 194 PSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIRDVLYS-STQGDSMEVDRRWVNVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
               +V +   +    TT+++++ +K+G  I    + +  A +S  G  ++ C+ G    
Sbjct: 253 IQAADVTLVAELARANTTVEELLAMKVGDFIELERQPRIEATIS--GVPVFECQYGTHNA 310

Query: 295 NYTIRI 300
            Y IRI
Sbjct: 311 KYAIRI 316


>gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
 gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
          Length = 341

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 74  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 133

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 134 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 185

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+    A
Sbjct: 186 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 244

Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            K     ++V ID  I   + TLKDV+  K G VI     E    ++       Y C+LG
Sbjct: 245 LKDEIMDVDVGIDATIVEHQVTLKDVMEFKQGDVITVELPEHI--VMRVEDLPTYRCKLG 302

Query: 291 RVGKNYTIRITDRI 304
               N  +RI + I
Sbjct: 303 TARDNLALRICETI 316


>gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
 gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
          Length = 342

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  I   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 304 RSRDNLALKIHEKI 317


>gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
 gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
 gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
 gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
 gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
 gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
 gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
 gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
          Length = 342

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  I   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 304 RSRDNLALKIYEKI 317


>gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
 gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
 gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678]
          Length = 342

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  I   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 304 RSRDNLALKIHEKI 317


>gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
 gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
          Length = 399

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 26/257 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116
           V++S     S +F+  ++S     V +      W +       ++L+ ++++ LLG    
Sbjct: 130 VEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRG 189

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           +T  ++  R  +T+E  L KR +  + A   Q        +      + ID L+ N    
Sbjct: 190 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 243

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
             +R +N  +  + + + +E+   +  L++P  T+  ++  L+ +    K         D
Sbjct: 244 AISRPANAAIL-VRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGR------D 296

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           P      A +  +  + +D  +      LK +++LK+G  +P   R      +      +
Sbjct: 297 PIWEGHLATEIAKAEMYVDAVLYEADMPLKQLMSLKVGDTLPLDIRPDAMVSVRCGDVTL 356

Query: 285 YSCELGRVGKNYTIRIT 301
               +GRVG    IR++
Sbjct: 357 SEGRMGRVGDRVAIRVS 373


>gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 37/63 (58%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V+I+  I     TL ++ TLK+GQ++P          L +  K +Y C LG++G +++IR
Sbjct: 245 VHIEAFIQQGSMTLNELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKIGTSFSIR 304

Query: 300 ITD 302
           +T+
Sbjct: 305 VTN 307


>gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
           ATCC 49242]
 gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
           ATCC 49242]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           + E  SE+L D   R    +NV I+ R      TL+D+  L++G V+       +   + 
Sbjct: 220 RDERWSENLYDNIVRTEVAVNVKIEAR----GFTLEDIANLEVGDVLGLPIAPTSPIRIE 275

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           + G+ ++ C LG+   +YT+R+ D  +  Q  ++N L
Sbjct: 276 SEGRTLFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312


>gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
 gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
          Length = 322

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           V I+  I     TL ++  LK+GQV+P   + EK   + S N K +Y C LG++G +++I
Sbjct: 245 VRIEAFIQQGSMTLNELSILKVGQVLPLPANAEKQIRLRSGN-KSLYKCSLGKIGTSFSI 303

Query: 299 RITD 302
           R+T+
Sbjct: 304 RVTN 307


>gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
           DS-1]
 gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
           DS-1]
          Length = 374

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/259 (20%), Positives = 111/259 (42%), Gaps = 22/259 (8%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S  +  S +F   ++S     + +      W +       +NL+ ++++ LLG   
Sbjct: 92  NVEVSLDNVSSIRFGDYLNSIPLPAILAVFRAKQWDNYGMFTVDSNLIYSIVDVLLGGRR 151

Query: 117 ETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTN 174
            T   ++  R  +T+E  L +R    I  VL    S  +  SP  LE    +D ++ N  
Sbjct: 152 GTAAMRIEGRPYTTIELNLVQR---MIEVVLQDVQSAFEPLSPVTLE----LDRMETNPR 204

Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228
                        + + + +E+      L++P  TL  ++  L+ +      E    D I
Sbjct: 205 FAAIARPANAAILVKLRVDMEDRGGRIELLLPYATLEPIRELLLQMF---MGEKFGRDTI 261

Query: 229 --DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIY 285
                A + +   V ++  ++ ++ +L++V+  ++GQ +  L+     AI L   G  + 
Sbjct: 262 WESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTL-MLNSGPEGAIDLRCGGVRLG 320

Query: 286 SCELGRVGKNYTIRITDRI 304
             ++GRVG +  +R+   I
Sbjct: 321 KGKMGRVGNHVAVRVEQAI 339


>gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
           11170]
 gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
           11170]
          Length = 384

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 111/261 (42%), Gaps = 26/261 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S  + QS +F   ++S     + S      W +   +   ++++ ++++ LLG    
Sbjct: 133 VEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYSIVDVLLGGRRG 192

Query: 118 TIP-QLYNRSLSTVEKKLAKR----TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           T   ++  R  +T+E+ L +R     +A +SA  +     T          +  D L+ N
Sbjct: 193 TAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVT----------FRFDRLETN 242

Query: 173 T-----NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSE 225
                 +R SN  +    + + +E+      ++IP  TL  ++  L+ +    K    S 
Sbjct: 243 PRFATISRPSNAAIVA-KLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDS- 300

Query: 226 DLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
            + +   A + +   V +D  ++     L  ++++++G  I F     +   L      +
Sbjct: 301 -IWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQLRCGDVPM 359

Query: 285 YSCELGRVGKNYTIRITDRIN 305
           +  ++GR G+N  IR+  + N
Sbjct: 360 FDGKMGRKGQNIAIRVDSKHN 380


>gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC1989]
 gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC1989]
          Length = 340

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           + +I P   +L   L     Q+ S+ + +  ++       Q NV +DT     K  LKD+
Sbjct: 217 YSMIEPIREMLDAGL-----QSDSDERDDRWVNSLREDIMQANVRLDTNFVQSKILLKDI 271

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           V LK G VIP    E+   I +ANG  ++  ++G+   N+ +++ + I
Sbjct: 272 VDLKEGDVIPIELPEEY--ITNANGVPMFKVDIGQSNGNFALKVNEVI 317


>gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
 gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
          Length = 325

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 20/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  K+   IH+       +   ++             LV  L++N  G     
Sbjct: 80  DVTVGGVQVMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIMDAKLVFKLVDNFFGGDGRH 139

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E +L  + + Q    L +  +  +E S         D+L    N  ++
Sbjct: 140 A-KIEGREFTPTETRLIHKALEQFFLDLEEAWNPVKELS--------FDHLGHEMNPAMA 190

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP 230
           N     E V      + +E  +  F + +P   L  ++  L+S   Q+  + + E     
Sbjct: 191 NVINPTEVVVVSTFQVDLEGGSGEFHVAMPYSMLEPIRDLLVS-GFQSGEDEKDERWQVA 249

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
             R      + ++  +  ++ TL+DVV L+ G +IP    E     L AN   +Y+C +G
Sbjct: 250 LQRDILMAGLPLEMTLAQQEMTLRDVVDLQAGDIIPIELPETFE--LKANKVPVYNCTMG 307

Query: 291 RVGKNYTIRITDRI 304
               N  +++ ++I
Sbjct: 308 VSRGNLAVKVVNQI 321


>gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
           69.14]
 gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
           69.14]
          Length = 281

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 51  LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 103

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 104 --VEFEYLDSEVNPSMANIVSPTEVIVVCSFHIEVDGGGGDFHMVMPY-SMVEPIRELLD 160

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V I+ R+NL  +   L+D++ L++G +IP    E  
Sbjct: 161 AGVQSDKMETDVRWSSALRDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMPEH- 219

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            AI+       Y  ++GR G    ++I+ +I
Sbjct: 220 -AIMFVEELPTYRVKMGRSGDKLAVQISQKI 249


>gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
 gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
          Length = 347

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  +++NL G     + +   R  +  E+++ +R +     +  +  S +  S   LE
Sbjct: 121 NLVFMVVDNLFGGDGRFLTKSEGREFTNTEQRIIQRMLR----LAIEAYSDSWRSVYPLE 176

Query: 162 DFYDIDYLK-------KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212
               I +L+        N     NE V   N N+ + N+ASSF + +P   +  L+  LI
Sbjct: 177 ----ISFLRSEMQAKFANITNSPNEIVVNTNFNLEVGNLASSFQICMPYSMIEPLRDLLI 232

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +  S +  ++Q        A +     V +        + + DV  L++G ++P    E 
Sbjct: 233 NPLS-DGHQDQDSTWTRRMAGEIRHSTVELVADFADLPSRIADVTALEVGDILPLELPET 291

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300
             A    +G  +  CE G       +R+
Sbjct: 292 VTA--KVDGVPVMECEYGSQHGQRALRV 317


>gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
 gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
          Length = 349

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E  
Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A++       Y  ++GR G+   ++++++I
Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319


>gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
 gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
 gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
 gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
 gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 48/254 (18%), Positives = 99/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +    S       I     LV  L++N  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  +   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 247 LHDEIMDVKVGFDACVVEHELTLKDVMNFKAGDIIPVELPEYI--MMKIEDLPTYRCKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 305 RSRDNLALKIYEKI 318


>gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
 gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
          Length = 349

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E  
Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A++       Y  ++GR G+   ++++++I
Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319


>gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603]
          Length = 349

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E  
Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A++       Y  ++GR G+   ++++++I
Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319


>gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 269

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 3/166 (1%)

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S     SG+F   + ++  N V        W  +  +G   + + T++E L G+     P
Sbjct: 82  SLNGIASGRFGEFLDAYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPP 141

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R+ S +E ++A+    Q+   L        ++   LE   +         R SN+ 
Sbjct: 142 VEDERNFSAIELRIAQMVFEQVGKALESSFGLVSQTPFRLERM-ETRMEFAVIGRRSNKA 200

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           V    +   + N      L+IPQ T+L     +LS     E+ + D
Sbjct: 201 VQAKFLLQAL-NRGGEMFLVIPQ-TVLNPLRPALSKVLTGESAARD 244


>gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
 gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans]
 gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
          Length = 332

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 17/206 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  L++NL G       ++  R  +  E+++ +R    I  ++ +  + + E    +E
Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQR----ILGIIFETYAKSWEPVYPVE 175

Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214
                +Y++   N         NE V      + +  V+      +P   +     L++ 
Sbjct: 176 ----FEYIRSEMNTQFANIATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTS 231

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           S Q ++    +  I    ++     V I   +   K TL D++ +KIG +I     E+  
Sbjct: 232 SMQGETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPEQVT 291

Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300
           A    +G  +  C  G++   Y +R+
Sbjct: 292 A--EVDGVPVMECSYGKLNGQYALRV 315


>gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
 gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
          Length = 349

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E  
Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A++       Y  ++GR G+   ++++++I
Sbjct: 290 -AVMFVEDLPTYRVKMGRSGEKLAVQVSEKI 319


>gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
 gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
          Length = 332

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 18/252 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   IH+       +   +              LV  L++N  G     
Sbjct: 76  DVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++       +  VLNQ     +E+   +    + +YL    N  ++
Sbjct: 136 -AKIEGREFTPTETRI-------VQMVLNQVFHDMKEAWHAVLQV-EFEYLSSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++         +P   +     ++    Q+  ++  E  ++  
Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNAL 246

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                ++NV I+T +  ++ +L+D+  +K G VIP    E     ++ANG  IY   LG 
Sbjct: 247 QEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVEIPEHLT--VTANGIPIYKATLGT 304

Query: 292 VGKNYTIRITDR 303
                 +RI DR
Sbjct: 305 RDGKLALRIHDR 316


>gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
 gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
 gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
 gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
 gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
 gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
 gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
 gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
 gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
 gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
 gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
 gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
 gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
 gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
 gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
 gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
 gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
 gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
 gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
 gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
 gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
 gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
 gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
 gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
 gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
 gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
 gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
 gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
 gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
 gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
 gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
 gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
 gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
 gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
 gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
 gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
 gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
 gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
 gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
 gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
 gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
 gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
 gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4]
          Length = 349

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E  
Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A++       Y  ++GR G+   ++++++I
Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319


>gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
 gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 21/255 (8%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF    ++       +            +     LV  L+EN  G     
Sbjct: 28  EVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 87

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTN-RL 176
             ++  R  +  E+++       I  +L    +  +E+ SP +    + +YL    N  +
Sbjct: 88  HARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG--VEFEYLDSEVNPSM 138

Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
           +N     E +   + ++ ++     F +++P  ++++     L +  +S+    D+    
Sbjct: 139 ANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLDAGVQSDKMETDVRWST 197

Query: 232 ARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           A +   ++V ++ R+NL +    L+D++ L++G VIP    E   A++       Y  ++
Sbjct: 198 ALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH--AVMFVEELPTYRVKM 255

Query: 290 GRVGKNYTIRITDRI 304
           GR G+   ++++++I
Sbjct: 256 GRSGEKLAVQVSEKI 270


>gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
 gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
          Length = 349

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 21/255 (8%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF    ++       +            +     LV  L+EN  G     
Sbjct: 77  EVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 136

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTN-RL 176
             ++  R  +  E+++       I  +L    +  +E+ SP +    + +YL    N  +
Sbjct: 137 HARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG--VEFEYLDSEVNPSM 187

Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
           +N     E +   + ++ ++     F +++P  ++++     L +  +S+    D+    
Sbjct: 188 ANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLDAGVQSDKMETDVRWST 246

Query: 232 ARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           A +   ++V ++ R+NL +    L+D++ L++G VIP    E   A++       Y  ++
Sbjct: 247 ALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH--AVMFVEELPTYRVKM 304

Query: 290 GRVGKNYTIRITDRI 304
           GR G+   ++++++I
Sbjct: 305 GRSGEKLAVQVSEKI 319


>gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771]
          Length = 47

 Score = 44.3 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++
Sbjct: 8   VSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47


>gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 15/224 (6%)

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQL----YNRSLSTVEKKLAKRTIAQISAVL 146
           W    ++     LV +++E + GA       +     +R    +E+K++      ++  L
Sbjct: 92  WGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKISALLAGHLAKSL 151

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           +Q  +   ++     +  D     +     S  F   I++  T         L++P+ T 
Sbjct: 152 DQVFAGNGQTLFAAGECIDTAEFDRENFERSRLFACRIDV--TAAGKTGRVHLLLPRSTH 209

Query: 207 LKTTLISLSSQNKSENQSEDLIDP-FARK----TYQLNVNIDTRINLKKTTLKDVVTLKI 261
                   +   +  NQ+    DP +A+K      +  + ++  I     TL  +  L+I
Sbjct: 210 KPMQDAVAAFLRRPMNQA----DPSWAKKMRHEVSRARIELEAFIQQGSMTLDALSMLEI 265

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           GQV+           L A  ++++ C LG+ G ++T+++ D +N
Sbjct: 266 GQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVN 309


>gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
 gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
          Length = 343

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  +   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 247 LHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 305 RSRDNLALKIYEKI 318


>gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
 gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
 gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
 gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
          Length = 343

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  +   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 247 LHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 305 RSRDNLALKIYEKI 318


>gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
 gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
          Length = 343

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+     
Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   + V  D  +   + TLKDV+  K G +IP    E    ++       Y C++G
Sbjct: 247 LHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMRIEDLPTYRCKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++I ++I
Sbjct: 305 RSRDNLALKIYEKI 318


>gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
           VL426]
 gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
 gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
           VL426]
 gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L    +  +E+ SP + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E  
Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A++       Y  ++GR G+   ++++++I
Sbjct: 290 -AVMFIEELPTYRVKMGRSGEKLAVQVSEKI 319


>gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1]
 gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1]
          Length = 332

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 106/269 (39%), Gaps = 13/269 (4%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   V I+  S     F   + S  +  + +   +     +  +  + 
Sbjct: 63  FARILTTYFSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFDVPPLDGHILMEVNP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           N+   +++ ++G     I ++ N  L+ +E K+      +    L    S   E  P L 
Sbjct: 123 NIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLRDAWSNIAEIDPMLS 180

Query: 162 DF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           +F  +  +L+  +    NE V  I+MN TI   +    +IIP   +L+  +  LS     
Sbjct: 181 EFEVNPQFLQMVS---PNETVVVISMNTTIGETSGMINIIIPH-VVLEPIIPKLSVSYWM 236

Query: 221 ENQSEDLIDP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           + +++D IDP       ++     V I   +     T+ D + L IG VI    R     
Sbjct: 237 QTKNKD-IDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDVIQLNKRIDAPL 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +       ++ + G + K   ++I D +
Sbjct: 296 TIKVGEIPKFTAQPGELNKRLAVQILDSL 324


>gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
 gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
          Length = 339

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 47/256 (18%), Positives = 97/256 (37%), Gaps = 22/256 (8%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 76  DVSVGGVQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDARLVFKLVDNFFGGDGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT---------QESSPNLEDFYDIDYL 169
             ++  R  +  E ++ +  + Q    L +               E +P+L +      +
Sbjct: 136 -AKIEGREFTPTELRVVQMVLNQAFVDLGEAWKAVFPVSFEYVHSEVNPSLANI-----V 189

Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229
             +   + + F   ++      ++   + +I P   +L   L     Q+ SE Q E  + 
Sbjct: 190 SPSEVVVVSTFHIELDGGGGEMHITVPYSMIEPIREVLDAGL-----QSDSEEQDERWVR 244

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                     V+++  +  +  TL+D+V LK G +IP    +    +++ANG  ++  +L
Sbjct: 245 ALREDVLAAKVDLECDVVRRDITLRDIVDLKEGDIIPVEFPD--YHVVTANGVPMFRTQL 302

Query: 290 GRVGKNYTIRITDRIN 305
           G+   N  ++I + I+
Sbjct: 303 GQHNDNLALKILEFID 318


>gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
 gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 42/254 (16%), Positives = 94/254 (37%), Gaps = 17/254 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
            ++S    Q  KF   +H+       +            +     LV  L+EN  G    
Sbjct: 81  AEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGR 140

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176
              ++  R  +  E+++ +  +  I        +    +        D +YL    N  +
Sbjct: 141 YHAKIEGREFTPTERRIIQMLLKIIFEDYKDAWAPVMTA--------DFEYLDSEVNPAM 192

Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDP 230
           +N     E +   + ++ ++     F + +P   L     L+    Q+  E+  +     
Sbjct: 193 ANIVSPTEVIVVNSFHIELDGGGGDFHIAMPYSMLEPIRELLDAGVQSDKEDTDQRWSQA 252

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +   ++V +  ++  K+  L+D++   +G +IP    E+   ++   G   +  +LG
Sbjct: 253 LEDEIMDVDVYLTAKLLEKQLPLRDMINWSVGDIIPVELPEEL--LVCVEGLPSFHAKLG 310

Query: 291 RVGKNYTIRITDRI 304
           +   N  ++I DRI
Sbjct: 311 KSNDNLALKIIDRI 324


>gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum
           JL354]
          Length = 339

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 14/258 (5%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           +++S     S +F   ++      + +   + +W     +    NL+  +++ LLG    
Sbjct: 87  IEVSLDDIASVRFGDFMNRVPLPCMIAVFKVPAWQDYGLVTIEANLIYAVVDALLGGRKG 146

Query: 118 TIPQ-LYNRSLSTVEKKLAKRTIA----QISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
             P+ +  R+ +T+E  L  + I     + S         T E    +E       +   
Sbjct: 147 AAPRKIEGRAFTTIETTLVSKMIELVLREFSTAFEPIAPITMELE-RIETSPRFAAIAGP 205

Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDP 230
           TN  S     T  ++M  +    +F +++P  TL +     LS +   E    D    D 
Sbjct: 206 TNVAS---AATFAVDM--DGRGGNFTILLPFATL-EPVRGKLSQRFMGEKLGGDNTWRDH 259

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +  +  V I T +  ++  L DV +L+IGQ IPF         +   G  +   ++G
Sbjct: 260 MRNEILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQIG 319

Query: 291 RVGKNYTIRITDRINFDQ 308
           R   +  I I D I   Q
Sbjct: 320 RQRNHVAIGIVDTIKQGQ 337


>gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893]
 gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893]
          Length = 332

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 18/252 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   IH+       +   +              LV  L++N  G     
Sbjct: 76  DVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++       +  VL+Q     +E+   +    D +YL    N  ++
Sbjct: 136 -AKIEGREFTPTETRI-------VQMVLDQVFHDMREAWHAVLKV-DFEYLSSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++  E  +   
Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGELHMALPYSMIEPIRDVLDAGVQSDIDDVDERWVSAL 246

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 +NV I+T +  ++ +L+D+  LK G +IP    E     L+ANG  +Y   +G 
Sbjct: 247 QEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVEIPE--LLTLTANGIPVYKATMGT 304

Query: 292 VGKNYTIRITDR 303
                 +RI DR
Sbjct: 305 RDGKLALRIHDR 316


>gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 382

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 16/255 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S  +  S +F   ++S     + +      W +   +   ++L+ ++++ LLG    
Sbjct: 134 VEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNYGLLTVDSSLIYSIVDVLLGGRRG 193

Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           T   ++  R  +T+E+ L +R    +  VL+   +     SP     +  D L+ N    
Sbjct: 194 TAAMRIEGRPYTTIERNLVER---MVHVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 247

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
             +R SN  +    + + +E+      L++P  TL  ++  L+ +    K    S     
Sbjct: 248 TISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSI-WET 305

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
             A + +   V ++  ++ +   L+DV+  K+G  I    +  +   L      ++   +
Sbjct: 306 HLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKILLNAQPNSPIDLRCGDVSMFRGRM 365

Query: 290 GRVGKNYTIRITDRI 304
           GR G +  IR+ D+I
Sbjct: 366 GRKGPHIAIRVDDKI 380


>gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis
           HTE831]
 gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 330

 Score = 42.7 bits (99), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           Y + L   F  ++   V+IS TS     +   I S  +  + +   +     N  +  + 
Sbjct: 62  YARMLTTFFATQLRSYVNISVTSVDQVPYEEFIRSIPKKTILNLYGMEPLDGNLIMEINP 121

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           N+   LL+ LLG    TI +  + +L+ +EK L  +   +    L    S+  E  P LE
Sbjct: 122 NIAYALLDRLLGGKGSTITK--DGNLTEIEKTLFMQMFEKAEDALRDAWSSVVEIEPVLE 179

Query: 162 DF 163
           +F
Sbjct: 180 EF 181


>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
 gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
          Length = 323

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 116/285 (40%), Gaps = 22/285 (7%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  I  + G L   FL    +  + + +     S +   +   I S     + +  S+
Sbjct: 52  RTLYMIHENYGRLVANFLSAYLRASIQVKI----VSVEQMTYEDFILSLPTPTLMNVFSM 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + N +  +++ L G   E + +  NR L+ +E  + +R  +++   L+ 
Sbjct: 108 EPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLSY 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLL 207
             S  Q  +P LE   +++   + T  +S NE V  I M  T+        L +P   LL
Sbjct: 166 SWSDIQNITPKLE---NMETNPQFTQAISPNETVAVITMGTTVGKYEGLLNLCLPY-MLL 221

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVTLKIG 262
           +  +  LS+ +      E    P  R        ++ V +   I   +  ++D + L++G
Sbjct: 222 EPVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVG 281

Query: 263 QVIPFLHREKTCA---ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            VI     EKT      L  +G   +  + G V K   +++T+ +
Sbjct: 282 DVITL---EKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323


>gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium
           cellulosolvens 6]
 gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium
           cellulosolvens 6]
          Length = 368

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 33/226 (14%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFS-----QASLSSWSSNFFIGCSNNLVITLLENLLG 113
           DI+    +  ++   ++SF EN   +           +S    I  +  L++TL+ ++LG
Sbjct: 82  DITVMELRESRYYEYVNSFHENDCMTIIDTVMPEKGKFSVPMMIYVTPGLILTLMSHMLG 141

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY----L 169
              + I    N   S VE  L KR +  I   L    S          ++  +D+    +
Sbjct: 142 GGEQVISTEENYRYSDVEMSLYKRILEYIIHALGDGFS----------NYLTVDFRPQKV 191

Query: 170 KKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK------ 219
           ++N + +     +E V  +++N+ +  +AS  + I    TLL+    ++ ++        
Sbjct: 192 EENPSMIQEVGLDETVVLVHLNVDVTGIASEKIRICIPGTLLEQIFRTIDNRKHIARGFT 251

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             N SE ++       + L   + T     + T++D+  L++G VI
Sbjct: 252 YSNNSEVIMSHLKETKFPLTAQLGT----VRLTMEDLYRLQVGDVI 293


>gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus
           C3-41]
 gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
          Length = 331

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 15/268 (5%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   V I+  S     F   + S     + +   +     N  +  + 
Sbjct: 63  FARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEVPPLDGNILMEINP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           N+  ++L+ ++G S  +   + N  L+ +E K+      +    L +      E  P L 
Sbjct: 123 NIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLREAWENVAEIDPILV 180

Query: 162 DFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLISL 214
           +      L+ N   L     NE V  I++N  I   +    + IP    E ++    +  
Sbjct: 181 E------LEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLEPIVPNLSVRY 234

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             Q  ++  S +       +  Q  + +   + L   T++D +T++IG VI    +    
Sbjct: 235 WMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDVIQLEQKINDP 294

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302
            +L       ++ + G+ GK   I+I D
Sbjct: 295 LLLKVGTLPKFTVQPGKQGKKLAIQIID 322


>gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
 gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
          Length = 365

 Score = 42.4 bits (98), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 118/272 (43%), Gaps = 28/272 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+     +  I  + ++   +L+ LLG   E
Sbjct: 80  VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGVIEINPSIAFPMLDRLLGGKGE 139

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
             P   +R  S +E  L          +L   +ST +E+  P +E +  I+  + + N +
Sbjct: 140 --PFDASREFSDIELSL-------FETILRVMMSTLKEAWGPVMEIYPTIESKESSPNVV 190

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + I + +    +   +I  E +L     +  +++ +S  KS N  
Sbjct: 191 QIVAQNEIVVMVVMEIIIGHSSGMMNICYPVISLEPILPKLASRDLMLNETSSKKSRNTE 250

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
             ++   A+      VN++  +   + T++DV+ L+IG V+           +S +GKE 
Sbjct: 251 LQVLLGGAK------VNVEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKER 304

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +  ++G      +I+I++ I+ ++ ++K  L 
Sbjct: 305 FRGQIGLRRFRKSIQISEIIDTEKDAVKRALE 336


>gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
 gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
          Length = 409

 Score = 42.4 bits (98), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 49/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S  S  + +F   ++S     +        W     +   ++L+ ++++ LLG    
Sbjct: 142 VEVSLDSMTNVRFGDYLNSIPLPAILGVFKAKEWDGFGLVTVESSLIYSIIDVLLGGGRG 201

Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           + P ++  R  +T+E  L +R I  I       +   Q   P     + ++ L+ N    
Sbjct: 202 SSPTRVEGRPYTTIESNLVRRMIEII------LLDAEQAFGPLSPVSFPLERLETNPRFA 255

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
             +R +N  +  + + + +E+      +++P  TL  ++  L+ +    K         D
Sbjct: 256 AISRPANAAI-MVELRIDMEDRGGKVEIVLPYATLEPIRDLLLQMFMGEKFGR------D 308

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           P      A + Y   V +D  +      L+ V+ L++GQ + F    +    +   G ++
Sbjct: 309 PIWEEHLATEVYSSEVQVDAVLYENTIPLQRVLNLEVGQTLLFDTGPRDPVQVKCGGVQL 368

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +G V    +I I+ ++   + +L  F
Sbjct: 369 TEGLMGHVDDRISIEISKKLKQPKMTLAAF 398


>gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 363

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 20/266 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   IH+       +            I     LV  L++N  G     
Sbjct: 78  EVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++ +  +  I     +  +   + S         +YL    N  ++
Sbjct: 138 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 189

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++L+     L +  +S+ +  DL    A
Sbjct: 190 NIVSPTEVVVISSFHIELDGGGGDFHIALPY-SMLEPIRELLDAGVQSDTEDTDLRWSKA 248

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V +D    L +   TLK ++ LK G +IP    E     +       +  ++G
Sbjct: 249 LRDEIMDVEVDMSTQLLEVDLTLKQIMELKAGDIIPVEMPEHITVFVEE--LPTFRAKMG 306

Query: 291 RVGKNYTIRITDRINFDQKSLKNFLH 316
           R   N  ++I+++I     S+K+ LH
Sbjct: 307 RSRDNVALQISEKIK-RPDSVKSELH 331


>gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
 gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/253 (18%), Positives = 95/253 (37%), Gaps = 18/253 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +        VL+QC    +E+   +    + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFIDLKEAWQAIMPV-NFEYMNSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  +   
Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 ++V +   +  ++  L+DV+ ++ G VIP    E    +L ANG   +   LG 
Sbjct: 249 REDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVELPEHL--VLRANGVPSFKARLGS 306

Query: 292 VGKNYTIRITDRI 304
              N  ++I D I
Sbjct: 307 HKGNLALQIIDPI 319


>gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1]
 gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1]
          Length = 349

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       I  ++       +E
Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLMKTVFEDYKE 166

Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R+NL  K  +L+D++ L+ G +IP
Sbjct: 224 PIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEKDVSLRDLMELQAGDIIP 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       +  ++GR G+   ++I+++I
Sbjct: 284 IDMPEN--ATMFVEELPTFRVKMGRTGEKVAVQISEKI 319


>gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 25/254 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+IS    +  K+S  I +       +            +  + +LV  +++NL G    
Sbjct: 77  VEISVGPVRVSKYSEFIRNLVVPTNLNLVQFKPLRGTALMIFNPDLVFLMVDNLFGGDGR 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY--LKKNTN- 174
              ++  R  +  E ++ +R       +LN       +S    E  Y I++  ++   N 
Sbjct: 137 FHTRVEGRDFTQTEHRIIQR-------ILNIVFEAYGKS---WEPVYPIEFEFIRSEMNT 186

Query: 175 -----RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--L 227
                   NE V  +   + +  ++      +P  ++++     L+S  ++EN   D   
Sbjct: 187 QFANIATPNEVVVAVTFAIELGQISGEMHFCMPY-SMIEPIKDLLTSSLQAENLEVDKRW 245

Query: 228 IDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
           I    R+  QL  V I   +   + +L+D+V LK+G VIP        A    +G  +  
Sbjct: 246 IR-LMRQQIQLAEVEIVADLGTAEVSLRDIVNLKVGDVIPLDIPPTIEA--KVDGVPVME 302

Query: 287 CELGRVGKNYTIRI 300
           C  G+    YT+R+
Sbjct: 303 CAYGKFNGQYTLRV 316


>gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7]
          Length = 322

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELGDSLVLRANGVPSFKVKLG 305


>gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
          Length = 352

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 28/272 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+        +  + ++   +++ LLG   +
Sbjct: 80  VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 139

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
             P    R  S +E  L       +  +L Q +   +E+ +P  E F ++D  + + N +
Sbjct: 140 --PYESTREFSDIELNL-------LDTILRQMMQNLKEAWAPITEIFPNVDVKESSPNVV 190

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + I + +    L   +I  E++L     +  ++S +S  KS N+ 
Sbjct: 191 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKE 250

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
              +   A+      VN+   +   K TL++++ L++G ++          I++ +G+E 
Sbjct: 251 LQALLGGAK------VNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIINVDGREK 304

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +   +G      TI I + I  ++  +K  L 
Sbjct: 305 FLASIGLHRYRKTIEIKEMIKTEKDQVKEILE 336


>gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 356

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/254 (18%), Positives = 102/254 (40%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L+EN  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       I  +L       +++   + D    +YL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMDV-GFEYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E +   + ++ ++     F + +P  ++L+     L +  +S+    D+    A
Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V ++ R  L +T  TL++++ LK G +IP    E    ++       +  ++G
Sbjct: 247 LRDEIMDVKVELRAKLLETDLTLRELMELKPGDIIPVEMPENL--LVYVEDLPTFHAKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++ITD++
Sbjct: 305 RTKDNVALKITDKL 318


>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
 gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
          Length = 329

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 56/289 (19%), Positives = 112/289 (38%), Gaps = 42/289 (14%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   V  S  S +   +   IHS     + +       +  F I  + 
Sbjct: 62  FTRMLTTFFSAQLRTYVQFSVNSVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEVNP 121

Query: 102 NLVITLLENLLGA--------------SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           N+   +L+ LLG                   + QLY R+ ST     A  +IA+I A ++
Sbjct: 122 NISYAMLDRLLGGPGVEMDKIESFTEIEMRILTQLYKRAFSTYGD--AWESIAEIKAEMS 179

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E +P                   NE V  I++ +TI  V+ +  + +P  T +
Sbjct: 180 AV-----EVNPQFLQLVS-----------PNETVVLISIGVTIGEVSGTINVCLPFVT-I 222

Query: 208 KTTLISLSS-----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           +  L  LSS     +    N S+   +P   +     V + + +     T  D++ L++G
Sbjct: 223 EPVLSKLSSHYWMQEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVG 282

Query: 263 QVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +    L +E    ++  N  +++  ++G  GK   +++  R+  +++
Sbjct: 283 DCLALDQLAKEPLSVMVGEN--KVFKGQVGVSGKRMAVQVLHRVKEEEQ 329


>gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 322

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-- 176
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N +  
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPVMA 188

Query: 177 ----SNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
                +E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDTLVLRANGVPSFKVKLG 305


>gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
 gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       I  +L       +E
Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166

Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R+NL  +  +L+D++ L+ G VIP
Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       Y  ++GR G+   ++I+++I
Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319


>gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 322

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  I+  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP    E    ++ ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSE--SLVMRANGVPSFKVKLG 305


>gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
 gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/218 (18%), Positives = 99/218 (45%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 114 LITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRI-------VQLLLKIVFEDYKE 166

Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R++L  +  +L+D++ L+ G +IP
Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVDLLEQDISLRDLMELQPGDIIP 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A++       +  ++GR G+N  ++++++I
Sbjct: 284 VTMPEH--AVMFVEELPTFRVKMGRSGENLAVQVSEKI 319


>gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae 642]
          Length = 322

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVLRANGVPSFKVKLG 305


>gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 347

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       I  +L       +E
Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166

Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R+NL  +  +L+D++ L+ G VIP
Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       Y  ++GR G+   ++I+++I
Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319


>gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
 gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
          Length = 308

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 16/218 (7%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYN----RSLSTVEKKLAKRTIAQISAVLNQ 148
           S   +   +N  +  L+ LLG      P L      R L+ +E  L +  +    A +  
Sbjct: 94  STALLQIPSNTTMLWLDYLLGG-----PGLERQENPRELTEIETALFRSLLDSSLADMRY 148

Query: 149 CISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
             S+    +P +    Y+  +++      ++E V   N ++T+ +  S+  ++   + LL
Sbjct: 149 AFSSITPMNPKIRGLQYNPQFVQAVP---ASEAVLVANYSLTVGDRVSAATMMFAADALL 205

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDVVTLKIGQV 264
               +     + S  Q E+    F R    +N   V++  R N      +D++ + +G V
Sbjct: 206 NPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDV 265

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I   H       +   G+ I     G  GK   +++TD
Sbjct: 266 IELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTD 303


>gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 103/254 (40%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L+EN  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       I  +L       +++   + D    +YL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMDV-GFEYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E +   + ++ ++     F + +P  ++L+     L +  +S+    D+    A
Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V ++ R  L +T  TL++++ L+ G +IP    E    ++       +  ++G
Sbjct: 247 LRDEIMDVKVELRAKLLETDLTLRELMELRPGDIIPVEMPENL--LVYVEDLPTFHAKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R  +N  ++ITD++
Sbjct: 305 RTKENVALKITDKL 318


>gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
 gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 98/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 114 LITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRI-------VQLLLKIVFEDYKE 166

Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R+NL  +  +L+D++ L+ G +IP
Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIP 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       +  ++GR G+N  ++++++I
Sbjct: 284 ITMPEH--ATMFVEELPTFRVKMGRSGENLAVQVSEKI 319


>gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32]
 gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32]
          Length = 347

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       I  +L       +E
Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166

Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R+NL  +  +L+D++ L+ G VIP
Sbjct: 224 PIRELLDAGVQSDKMETDVRWSSALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       Y  ++GR G+   ++I+++I
Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319


>gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida]
 gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1]
          Length = 322

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 18/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +        VL+QC    +E+   +      +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFVDLKEAWQAIMPV-SFEYMNSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  +   
Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +   +  ++  L+D++ ++ G VIP    E    +L ANG   +   LG 
Sbjct: 249 REDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHL--VLRANGVPAFKARLGS 306

Query: 292 VGKNYTIRITDRIN 305
              N  ++I D I 
Sbjct: 307 HKGNLALQIIDPIE 320


>gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198]
 gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198]
          Length = 357

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 54/272 (19%), Positives = 112/272 (41%), Gaps = 28/272 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+        +  + ++V ++++ LLG   E
Sbjct: 79  VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINPSIVFSMIDRLLGGKGE 138

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
           T    + R  S +E  L       +  +L Q + T +++  P  E F  +D  + + N +
Sbjct: 139 TYD--HQREFSDIELNL-------LDTILRQIMQTLKDAWGPVAEIFPSVDAKESSPNVV 189

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M M I + +    L   +I  E +L     +  ++S +S  KS N+ 
Sbjct: 190 QIVAQNEVVIMVVMEMIIGHSSGMLSLCYPVISLEAVLSRLGSRDLVLSETSSKKSRNKE 249

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
              +   A       +++   +     +L++++ L+ G +I           ++ +GK+ 
Sbjct: 250 LQALIGGA------GISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVAIDGKDK 303

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +  ++G      TIRI + I  ++  +K  L 
Sbjct: 304 FLADIGLQRYRKTIRIKEAIRTEKDQVKEILE 335


>gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
 gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
          Length = 322

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 18/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +        VL+QC    +E+   +      +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFVDLKEAWQAIMPV-SFEYMNSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  +   
Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V +   +  ++  L+D++ ++ G VIP    E    +L ANG   +   LG 
Sbjct: 249 REDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHL--VLRANGVPAFKARLGS 306

Query: 292 VGKNYTIRITDRIN 305
              N  ++I D I 
Sbjct: 307 HKGNLALQIIDPIE 320


>gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum
           SL003B-26A1]
 gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum
           SL003B-26A1]
          Length = 411

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 49/266 (18%), Positives = 106/266 (39%), Gaps = 16/266 (6%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V++S  S  S +F   ++S     +        W     +   ++L+ ++++ LLG   
Sbjct: 143 NVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVESSLIYSIIDVLLGGGR 202

Query: 117 ETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
            T   ++  R  +T+E  L +R +  I A   Q  +       NLE   + +      +R
Sbjct: 203 GTTAVRVEGRPYTTIETNLVRRMVEIILADAEQAFAPLSPVHFNLERL-ETNPRFAAISR 261

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP--- 230
            +N  +  + + + +E+   +  +++P  TL  ++  L+ +    K         DP   
Sbjct: 262 PANAAI-LVELRIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMGEKFGR------DPIWE 314

Query: 231 --FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
              A + +   + +D  +      L  V++L +GQ + F         +      +    
Sbjct: 315 GHLASEIHAAEIEVDAVLYETHLPLGRVLSLDVGQTLIFDVDPHDPITIKCGNVPLTEGT 374

Query: 289 LGRVGKNYTIRITDRINFDQKSLKNF 314
           LG+V  +  IR+T  +   + +L  F
Sbjct: 375 LGKVEDSIAIRVTRGLRRPKMTLAAF 400


>gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
 gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
          Length = 395

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 22/216 (10%)

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S  L +TL+ ++LG S   I    +   + VE  L KR +  I   L    S    +   
Sbjct: 138 SPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIVHALGDGFSNYISAE-- 195

Query: 160 LEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
               + I  ++ N + +     +E V    MN+ I  +A   + I    TLL+     + 
Sbjct: 196 ----FKIAKIETNPSMVQEVGLDETVVLAVMNVDISGLAMERIRICLPGTLLEHMFKIID 251

Query: 216 SQN------KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           ++         EN  + +++     ++ +      ++ + K  ++D+  LK+G VI  L+
Sbjct: 252 NRKHLARGFAYENNQDTIMEHLKASSFPMT----GQLGVVKLDIEDLYHLKVGDVID-LN 306

Query: 270 REKTCAI-LSANGKEIYSCELGRVGKNYTIRITDRI 304
           + K  A+ L    +  ++ ++G   KN  IRI DRI
Sbjct: 307 KAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRI 342


>gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
 gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
          Length = 326

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 56/287 (19%), Positives = 117/287 (40%), Gaps = 19/287 (6%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++ + ++V     + ++  +S   ++     +    ++
Sbjct: 52  RTLEIIFEHYGRLLSTNLPVYLRKTVQVEV----MNSEAVTYSEFTNALSNPVLLGLVNV 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S  S +  I  ++NL   +++ +LG     + +   R  S +E  + +R      ++L +
Sbjct: 108 SPLSGSIIIELADNLGYAIVDRMLGGLGTPLDK--PRDFSEIELLILERIYNVCVSLLPE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
             S+  E SP LE         +  +    E +  + +++ I +V     + +P  TL  
Sbjct: 166 PWSSVCEISPRLERIETNSQFAQIIS--PTEMIALVTLHIKIGDVEGLMNICLPYLTLES 223

Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               L T     + Q   + Q  D I+    K     + +   +     ++ D V L++G
Sbjct: 224 VMDKLNTKFWYSNLQEHDDKQYTDAIEALISKA---KIPVKAVLGNSTISVDDFVNLQVG 280

Query: 263 QVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            +I       +   I   N K+ ++   G VG NY +R+T  +  +Q
Sbjct: 281 DIIRLDSGVNQDLNIFVGNIKK-FTALPGAVGDNYAVRVTSVVREEQ 326


>gi|269114813|ref|YP_003302576.1| 1-acyl-SN-glycerol-3-phosphate acyltransferase [Mycoplasma hominis]
 gi|268322438|emb|CAX37173.1| 1-acyl-SN-glycerol-3-phosphate acyltransferase [Mycoplasma hominis
           ATCC 23114]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 18/145 (12%)

Query: 160 LEDFYDI----DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
           + D+Y +    D+L++ +N + N F  ++N+    ENV +   LIIP  +     LI  S
Sbjct: 31  MPDYYKVVEKNDFLQQKSNAILNHFNISVNVE-GFENVPNGPCLIIPNHSTYLDPLIMWS 89

Query: 216 S--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD-------VVTLK-IGQVI 265
           +   ++  ++   L++  ARK       +    +L +T   D       + TLK  GQ  
Sbjct: 90  ALWNHRDGSKQSKLVNFVARKEITKKKMVKRIADLGQTYYIDTQNPREALATLKDFGQ-- 147

Query: 266 PFLHREKTCAILSANGKEIYSCELG 290
            F+ R K+C ++ A G      +LG
Sbjct: 148 -FIKRNKSCGVIFAEGTRTKDGKLG 171


>gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
 gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
          Length = 366

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 28/272 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+     +  I  + ++   +L+ LLG   E
Sbjct: 80  VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGIIEINPSIAFPMLDRLLGGKGE 139

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
             P   +R  S +E  L          +L   +ST +E+  P +E +  I+  + + N +
Sbjct: 140 --PFDASREFSDIELSL-------FETILRVMMSTLKEAWGPVMEIYPTIESKESSPNVV 190

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + I + +    +   +I  E +L     +  +++ +S  KS N  
Sbjct: 191 QIVAQNEIVVMVVMEIIIGHSSGMMNICYPVISLEPVLPKLASRDLMLNETSSKKSRNTE 250

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
             ++   A+      VN++  +     ++ D++ LK+G VI           ++ +GKE 
Sbjct: 251 LKVLLGGAK------VNVEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKER 304

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +  E+G      +I IT+ I  ++ ++K  L 
Sbjct: 305 FRGEIGLRRFRKSISITEIIETEKDTVKRALE 336


>gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565]
 gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565]
          Length = 356

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L+EN  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       I  +L       +++   + D    +YL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E +   + ++ ++     F + +P  ++L+     L +  +S+    D+    A
Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V ++ R  L +T  TL++++ L+ G +IP    E     +       +  ++G
Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELRPGDIIPVDMPENLLVFVED--LPTFHAKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++ITD++
Sbjct: 305 RTKDNVALKITDKL 318


>gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36]
 gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36]
          Length = 350

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 17/253 (6%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            +     LV  L+EN  G     
Sbjct: 77  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 136

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       I  +L        E+   + D  + +YL    N  ++
Sbjct: 137 HAKIEGREFTPTERRI-------IQMLLKIVFEDYHEAWAPVMD-AEFEYLDSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V   + ++ ++     F + +P   L     L+    Q+  E+  E      
Sbjct: 189 NIVSPTEVVVVSSFHIELDGGGGDFHITMPYSMLEPIRELLDAGVQSDKEDTDERWSSAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   + V + T++   + T+  ++ L++G +IP    E+    +       Y  +LGR
Sbjct: 249 QEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIEMPEELTVFIEDLPS--YKAKLGR 306

Query: 292 VGKNYTIRITDRI 304
              N  ++I+ ++
Sbjct: 307 NKDNVAVKISRKL 319


>gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium
           HP15]
          Length = 332

 Score = 40.8 bits (94), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/257 (19%), Positives = 98/257 (38%), Gaps = 18/257 (7%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           M  + D+S    Q  KF   IH+       +   +              LV  L++N  G
Sbjct: 71  MRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFG 130

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E ++       +  VL+Q     +E+   +    D +YL    
Sbjct: 131 GEGRH-AKIEGREFTPTETRI-------VQMVLDQVFHDMKEAWHAVLKV-DFEYLSSEV 181

Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSED 226
           N  ++N     E V     ++ ++         +P   +     ++    Q+  ++  E 
Sbjct: 182 NPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDER 241

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            ++       +++V I+T +  ++ +L+D+  +K G +IP    E     ++ANG  IY 
Sbjct: 242 WVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPEHLT--VTANGIPIYK 299

Query: 287 CELGRVGKNYTIRITDR 303
             LG       +RI +R
Sbjct: 300 ATLGTRDGKLALRIHER 316


>gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato K40]
 gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 322

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         +L ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDTLVLRANGVPSFKVKLG 305


>gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 252

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 8   DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 67

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 68  A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 118

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 119 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 178

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG
Sbjct: 179 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 235


>gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 322

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 305


>gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM
           1740]
 gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes]
          Length = 354

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 30/273 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+        +  + ++   +++ LLG   +
Sbjct: 79  VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 138

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
             P    R  S +E  L       +  +L Q +   +E+ +P  E F  +D  + + N +
Sbjct: 139 --PYEATREFSDIELNL-------LDTILRQMMQNLKEAWAPVAEIFPSVDAKESSPNVV 189

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + I + +    L   +I  E++L     +  ++S +S  KS N+ 
Sbjct: 190 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDLMLSETSSKKSRNRE 249

Query: 225 -EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
            + L+   A       VNI   +      LK+V+ L +G ++          I++ +G+E
Sbjct: 250 LQALLGGAA-------VNISAVLGGTSLDLKEVLELGVGDIVRLDRPADDTVIVNVDGRE 302

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
            Y   +G      T++I + I  ++  +K  L 
Sbjct: 303 KYIATIGLQRYRKTVKIKEVIKTEKDQVKEILE 335


>gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
           25196]
 gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
           25196]
          Length = 326

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 21/207 (10%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  +++NL G     +P+   R  +  E+++ +R       +LN    +  +S      
Sbjct: 121 LVFLVVDNLFGGDGRFLPKTEGRDFTQTEQRIIQR-------LLNLVFDSYGKS---WHP 170

Query: 163 FYDID--YLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLIS 213
            Y I+  YL+  TN         NE V      +   +V     + +P   L     L+S
Sbjct: 171 VYPIEFEYLRAETNTQFANVATPNEVVVATTFEVNFGSVVGEMHICMPYSILEPIRDLLS 230

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            + Q ++    +  +   +++     V +   +   +  L  ++ +K+G VIP    E  
Sbjct: 231 STLQGEALEVDKRWVGRLSKQVQSAEVTLLANLTHAQVRLDQILNMKVGDVIPLDIPEFV 290

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRI 300
            A  S +G  +  C+ G     Y +R+
Sbjct: 291 TA--SVDGVPVMECKYGISNGRYALRM 315


>gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
 gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 86/216 (39%), Gaps = 18/216 (8%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           VD++  S    KF   + S       +   +     N  +     LV +L+EN  G +  
Sbjct: 77  VDVNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALLVVDTRLVFSLVENFFGGAGS 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175
             P++  R  + +E+ +  + +  I A L        E S        I+ L+   N   
Sbjct: 137 Q-PKIEGRDFTPIEQSIIVKVVKIILANLEDAWRPVHEVS--------IELLRSEINPQF 187

Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
                 ++ V  I+  + +EN   S VL +P  T+  +++ L + + Q +        I 
Sbjct: 188 ATIVPPSDVVVVISFEVELENALGSMVLALPYATIEPIRSKLYA-AFQTERLEIDHAWIS 246

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            F  +  +  V+++      + T + ++ +K+G ++
Sbjct: 247 RFRDRLMETPVDMNVTFGTTQITGRQLLDMKVGDIL 282


>gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1]
 gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/253 (15%), Positives = 94/253 (37%), Gaps = 18/253 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E +     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            +    ++V I   +  ++  L+D++ ++ G VIP    E    I+ ANG   +  ++G 
Sbjct: 249 RQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMPEDM--IMRANGVPAFKVKMGS 306

Query: 292 VGKNYTIRITDRI 304
              N  +++ + I
Sbjct: 307 HKGNLALQVIEPI 319


>gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 356

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L+EN  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       I  +L       +++   + D    +YL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E +   + ++ ++     F + +P  ++L+     L +  +S+    D+    A
Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V ++ R  L +T  TL++++ L+ G +IP    E     +       +  ++G
Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFVED--LPTFHAKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++ITD++
Sbjct: 305 RTKDNVALKITDKL 318


>gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 356

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L+EN  G     
Sbjct: 76  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       I  +L       +++   + D    +YL    N  ++
Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E +   + ++ ++     F + +P  ++L+     L +  +S+    D+    A
Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V ++ R  L +T  TL++++ L+ G +IP    E     +       +  ++G
Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFV--EDLPTFHAKMG 304

Query: 291 RVGKNYTIRITDRI 304
           R   N  ++ITD++
Sbjct: 305 RTKDNVALKITDKL 318


>gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
 gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
          Length = 336

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 9/208 (4%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NL+  +++NL G       ++  R  + VE+++ +R    +  V        Q   P   
Sbjct: 122 NLIFLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQR---MLHLVFEHYAKAWQPVYPIDF 178

Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           +F  ++   +  N  + NE V T + ++ + +      + +P  T+++     L+S  + 
Sbjct: 179 EFLRMEMHTEFANVATPNEVVITTSFSIELGSNGGDVHICMPY-TMIEPIRDRLTSAIQG 237

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +   +++     V +   +   K  + D++ +K+G VIP       C    
Sbjct: 238 EALEVDKRWLRLLSQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPL--ELDDCVTAK 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306
            +G  +  C  G     Y +R+   +N 
Sbjct: 296 VDGVPVMECNYGTFNGQYALRVNRMLNM 323


>gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
 gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
          Length = 352

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 112/272 (41%), Gaps = 28/272 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+        +  + ++   +++ LLG   +
Sbjct: 80  VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 139

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
             P    R  S +E  L       +  +L Q +   +E+ +P  E F ++D  + + N +
Sbjct: 140 --PYESTREFSDIELNL-------LDTILRQMMQNLKEAWAPITEIFPNVDVKESSPNVV 190

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + I + +    L   +I  E++L     +  ++S +S  KS N+ 
Sbjct: 191 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKE 250

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
              +   A+      VN+   +   K TL++++ L+ G ++          I++ +G+E 
Sbjct: 251 LQALLGGAK------VNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIINVDGREK 304

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +   +G      TI + + I  ++  +K  L 
Sbjct: 305 FLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336


>gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       + A +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V     ++ ++       + +P   +     ++    Q+  ++Q E  ++  
Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +NV + T I  ++  L+D++ ++ G VIP         ++ ANG   +  +LG
Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 305


>gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
 gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
          Length = 329

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 27/268 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW----SSNFFIGCSNNLVITLLENLLG 113
            D+S    Q  KF   +H+    +V +  +L  +    S+  FI     LV  L++N  G
Sbjct: 75  ADVSSGGLQIMKFGEYVHTL---YVPTSLNLVKFRPLRSTALFI-LDAKLVFKLVDNFFG 130

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E ++ +  + Q+       +  T+  +P L+   +++Y+    
Sbjct: 131 GDGRH-AKIEGREFTPTEIRIVQLMLEQV------FVDLTEAWAPVLK--LELEYISSEV 181

Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSED 226
           N  ++N     E V     ++ ++       + +P   +     L+    Q+  + + + 
Sbjct: 182 NPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVRELLDAGVQSDVDEKDDR 241

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                 +    ++VN+   I  KK TL DV+  K G VIP    E     + AN    + 
Sbjct: 242 WGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMPEYVT--VRANNVPTFR 299

Query: 287 CELGRVGKNYTIRITDRINFDQK-SLKN 313
            +LG     Y++++ + I    K SLKN
Sbjct: 300 GKLGSSNGKYSVQMKESIKAQMKESLKN 327


>gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 342

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 95/215 (44%), Gaps = 15/215 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V +   S +   +   I S  +  V     +   SSN  +  +  LV  +++ +LG + +
Sbjct: 79  VSVEVASVEQLSYDEFIKSLVQPTVIVVMEMYPLSSNALLEINPRLVFAIIDRMLGGAGK 138

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T  +   R L+ +E+ + +R + ++  +L +  +T  +    +++     Y  +     +
Sbjct: 139 TTYK--ARELTDIERTVTERVVMRMLELLEESWATIVDLRFRIQNMESNPYFAQICP--A 194

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-------NKSENQSEDLIDP 230
           ++ V  I + + I +V     + IP    ++  +  LSSQ       ++ ++ S++ I  
Sbjct: 195 SDVVVVITLQVKIGDVDGFINICIPY-FAIEPVIDQLSSQRWFVSTGSREDDASQERI-- 251

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              +  ++ V +   I      LKD++ L++G VI
Sbjct: 252 -IERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVI 285


>gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
 gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
          Length = 342

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 45/254 (17%), Positives = 102/254 (40%), Gaps = 19/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 75  EVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALITMEARLVFILVDNFFGGDGRF 134

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++       +  +L       +++   + D  + DYL    N  ++
Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++++     L +  +S+ Q  D+    A
Sbjct: 187 NIVSPTEVVVVNSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245

Query: 233 RKTYQLNVNI--DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            K   ++V +  +  +   + +L+DV+ ++ G VIP    E    ++       Y C+LG
Sbjct: 246 LKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPE--YVLMKIEELPTYRCKLG 303

Query: 291 RVGKNYTIRITDRI 304
           +  +   ++I ++I
Sbjct: 304 KSREQLALKICEKI 317


>gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
 gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
 gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218]
          Length = 352

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 39/211 (18%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161
           LV  L+EN  G       ++  R  +  E+++       I  +L       +++ +P + 
Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFGDYKDAWAPVMG 173

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +YL    N  ++N     E +   + ++ ++     F +++P  ++++     L 
Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHIVMPY-SMVEPIRELLD 230

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKT 273
           +  +S+    D+    A +   ++V ++ R+NL  +   L+D++ L++G +IP    E  
Sbjct: 231 AGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDLALRDLMELQVGDIIPIKMPEH- 289

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            A +       Y  ++GR G+   ++++++I
Sbjct: 290 -ATMFVEELPTYRVKMGRSGEKLAVQVSEKI 319


>gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 349

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165

Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R  L     +L+D++ L++G VIP
Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E+  A +       Y  ++GR G N  ++I++++
Sbjct: 283 IDMPEQ--ATIFVEDLPTYHAKMGRSGDNVALKISEKL 318


>gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 349

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165

Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R  L     +L+D++ L++G VIP
Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E+  A +       Y  ++GR G N  ++I++++
Sbjct: 283 IDMPEQ--ATIFVEDLPTYHAKMGRSGDNVALKISEKL 318


>gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 349

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165

Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266
                L +  +S+    D+    A +   ++V ++ R  L     +L+D++ L++G VIP
Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E+  A +       Y  ++GR G N  ++I++++
Sbjct: 283 IDMPEQ--ATIFIEDLPTYHAKMGRSGDNVALKISEKL 318


>gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 352

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 46/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
            ++S    Q  KF   IH+       +            I     LV  L++N  G    
Sbjct: 76  AEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGR 135

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176
              ++  R  +  E+++ +  +  I     +  +   + S         +YL    N  +
Sbjct: 136 YHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS--------FEYLDSEVNPAM 187

Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
           +N     E V   + ++ ++     F + +P  ++L+     L +  +S+ +  DL    
Sbjct: 188 ANIVSPTEVVVISSFHIELDGGGGDFHVSLPY-SMLEPIRELLDAGVQSDKEDTDLRWSK 246

Query: 232 ARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           A +   ++V ++   ++   TL  + ++ +K G +IP    E    ++       +  +L
Sbjct: 247 ALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPEHITVMIEE--LPTFRAKL 304

Query: 290 GRVGKNYTIRITDRI 304
           GR   N  ++ITD+I
Sbjct: 305 GRSRDNLALKITDKI 319


>gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
           T6c]
 gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
           T6c]
          Length = 352

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 46/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
            ++S    Q  KF   IH+       +            I     LV  L++N  G    
Sbjct: 76  AEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGR 135

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176
              ++  R  +  E+++ +  +  I     +  +   + S         +YL    N  +
Sbjct: 136 YHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS--------FEYLDSEVNPAM 187

Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
           +N     E V   + ++ ++     F + +P  ++L+     L +  +S+ +  DL    
Sbjct: 188 ANIVSPTEVVVISSFHIELDGGGGDFHVSLPY-SMLEPIRELLDAGVQSDKEDTDLRWSK 246

Query: 232 ARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           A +   ++V ++   ++   TL  + ++ +K G +IP    E    ++       +  +L
Sbjct: 247 ALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPEHITVMIEE--LPTFRAKL 304

Query: 290 GRVGKNYTIRITDRI 304
           GR   N  ++ITD+I
Sbjct: 305 GRSRDNLALKITDKI 319


>gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132]
 gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           ND132]
          Length = 325

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           VDI+  S    KF   + S       S   +     N  +   + LV  L+EN  G +  
Sbjct: 77  VDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGS 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175
             P++  R  + +E+ + +R       V+   ++  +ES   + + + ++ ++   N   
Sbjct: 137 Q-PKVEGRDFTPIEQAIVER-------VVKIALANMEESWKPVHEVH-VEMVRTEVNPQF 187

Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---- 227
                 ++ V  +   + +EN   S ++ +P       T+  + S+  +  QSE L    
Sbjct: 188 AAIVPPSDVVIVVTFEVELENAIGSLIVCLPY-----ATMEPIRSKLHASFQSERLEVDH 242

Query: 228 --IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
             I+ F  +  +  V +  R+     + + ++ L+ G +I     E         G   +
Sbjct: 243 VWINRFKERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKF 302

Query: 286 SCELGRVGKNYTIRI 300
               GRV  N + ++
Sbjct: 303 QGLPGRVKGNKSFKV 317


>gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 332

 Score = 39.3 bits (90), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 44/250 (17%), Positives = 104/250 (41%), Gaps = 9/250 (3%)

Query: 57  DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           +V +   + +   +   IHS +   + +   +   + N     +    + +++ LLG + 
Sbjct: 77  NVKVKIETVEQITYEEFIHSVQNPTIITVFKMPPLAGNIIFETNPQFSLQVIDILLGGNG 136

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +   ++  +  S ++K + ++    + + L     +  E  P +E       +  N    
Sbjct: 137 DR--KVEAKEFSDIDKNIMRQITTGMISNLKLAWESILEVEPEVEGIETNPAI--NQTLA 192

Query: 177 SNEFVTTINMNMTIENVASSFV-LIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPFA 232
            N+ V  I  ++ + N  S+F+ + IP    E +L   ++  S +N  E+   +  +   
Sbjct: 193 PNDPVALITFSVEM-NKRSTFINMCIPYLSIEKILDKLVVQYSFKNDDESLKAESREKIE 251

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              ++++V++   +     T++D + L +G VI    R  +   +    +E Y  + G  
Sbjct: 252 EGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVIKLDTRSSSPIKVYVGNEECYCAKPGVS 311

Query: 293 GKNYTIRITD 302
           GKN  + I D
Sbjct: 312 GKNMGVMILD 321


>gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
 gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
          Length = 322

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 42/255 (16%), Positives = 95/255 (37%), Gaps = 20/255 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVAVGGVQGMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q    L +      E         + +Y+    N  ++
Sbjct: 138 A-KIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E +     ++ ++       + +P   +     ++    Q+  ++Q E  +   
Sbjct: 189 NIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELG 290
                 ++V +   +  ++  L+D++ ++ G VIP  L +E    I+ ANG   +  +LG
Sbjct: 249 REDLLDVDVPLSATVARRQLRLRDILHMQPGDVIPVELPQE---MIMRANGVPSFKVKLG 305

Query: 291 RVGKNYTIRITDRIN 305
               N  +++ + IN
Sbjct: 306 SHKGNLALQVIEPIN 320


>gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
 gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
          Length = 342

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 28/258 (10%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 97  DVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGRH 156

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +        VL+Q  +  +E+   + D  + +Y+    N  L+
Sbjct: 157 A-KIEGREFTPTELRVVR-------MVLDQAFADLKEAWHAVLDV-NFEYVNSEVNPALA 207

Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N            F   ++      +V   + +I P   +L         Q+   +Q E 
Sbjct: 208 NIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGF-----QSDVSDQDER 262

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            +         +NV +   +  ++  L+D++ ++ G VIP    E    I+ ANG   + 
Sbjct: 263 WVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDM--IMRANGMPAFK 320

Query: 287 CELGRVGKNYTIRITDRI 304
            +LG    N  +++ + +
Sbjct: 321 VKLGAHKGNLALQVLEPV 338


>gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166]
          Length = 323

 Score = 38.9 bits (89), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 28/258 (10%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +        VL+Q  +  +E+   + D  + +Y+    N  L+
Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQAFADLKEAWHAVLDV-NFEYVNSEVNPALA 188

Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N            F   ++      +V   + +I P   +L         Q+   +Q E 
Sbjct: 189 NIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGF-----QSDVSDQDER 243

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            +         +NV +   +  ++  L+D++ ++ G VIP    E    I+ ANG   + 
Sbjct: 244 WVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDM--IMRANGMPAFK 301

Query: 287 CELGRVGKNYTIRITDRI 304
            +LG    N  +++ + +
Sbjct: 302 VKLGAHKGNLALQVLEPV 319


>gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
 gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
          Length = 341

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 107/255 (41%), Gaps = 16/255 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S  +  S +F   ++S     + S      W +   +   + L+ ++++ LLG    
Sbjct: 92  VEVSLDNITSIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVDSALIYSIVDVLLGGRRG 151

Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174
           T   ++  R  +T+E+ L +R    ++ VL+   +     SP     +  D L+ N    
Sbjct: 152 TAAMRIEGRPYTTIERNLVER---MVTVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 205

Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
              R +N  V    + + +E+      L++P  TL  ++  L+ +    K    S     
Sbjct: 206 TIARPANAAVLA-RLRIDMEDRGGRLELMLPYATLEPVRELLLQMFMGEKFGRDSI-WET 263

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
             A + +  +V +D  ++     L DV+ LK G  I       +   +      ++S ++
Sbjct: 264 HLANELWNTDVELDAVLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDMRCGNVSLFSGKM 323

Query: 290 GRVGKNYTIRITDRI 304
           GR   +  +RI++R+
Sbjct: 324 GRKNGSIAVRISNRL 338


>gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium
           HTCC2143]
 gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium
           HTCC2143]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           VN+  ++  K+  L+D++ LK G VIP         ++SANG  +   +LG+   N  ++
Sbjct: 255 VNMGCKVAEKEVPLRDIIDLKEGDVIPM--EMPGDLVISANGIPMMLAKLGQSKGNLALQ 312

Query: 300 ITDRIN 305
           + ++IN
Sbjct: 313 VVEKIN 318


>gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
 gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
          Length = 364

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/265 (17%), Positives = 99/265 (37%), Gaps = 18/265 (6%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   IH+       +            I     LV  L++N  G     
Sbjct: 79  EVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 138

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++ +  +  I     +  +   + S         +YL    N  ++
Sbjct: 139 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 190

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231
           N     E V   + ++ ++     F + +P   L     L+    Q+ +E+         
Sbjct: 191 NIVSPTEVVVISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKAL 250

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
             +   + V + TR+   K +L+ ++ L+ G VIP    E     +       +  ++GR
Sbjct: 251 RDEIMDVEVGLSTRMLEVKLSLEQIMNLQAGDVIPVEMPEHITVFI--EDLPTFRAKMGR 308

Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316
              N  ++I+++I     S+K+ +H
Sbjct: 309 SRDNVALQISEKIK-RPDSVKSEMH 332


>gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 333

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 17/206 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  +++NL G       ++  R  +  E+++ +R +A    V      + +   P   
Sbjct: 120 NLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILA---IVFENYAKSWEPVYP--- 173

Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
              + +Y++   N         NE V      + +  V+      IP  T+     I  S
Sbjct: 174 --VEFEYIRSEMNTQFANIATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTS 231

Query: 216 S-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           S Q ++    +  I    ++     V I     + ++    ++ +K+G +IP    +   
Sbjct: 232 SLQGETLEVDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVL 291

Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300
           A    +G  +  C  G+    Y +R+
Sbjct: 292 A--KVDGVPVMECTYGKFNGQYALRV 315


>gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
 gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
          Length = 412

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 112/271 (41%), Gaps = 28/271 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S  S  S +F   ++S     +        W     I   ++L+ ++++ LLG    
Sbjct: 145 VEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLITVESSLIYSIIDVLLGGGRG 204

Query: 118 T-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           T   ++  R  +T+E  L ++ +A I   L          SP     ++++ L+ N    
Sbjct: 205 TSAVRVEGRPYTTIETGLVQQMVALI---LQDAEHAFAPLSPV---HFNLERLETNPRFA 258

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
             +R +N  +  + + + +E+   S  +++P  TL  ++  L+ +    K         D
Sbjct: 259 AISRPANAAI-LVELRIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMGEKFGR------D 311

Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK-E 283
           P      A + +   V +D  +      L  V++L +GQ + F  +E T  ++   G   
Sbjct: 312 PIWEGHLATEIHAAEVEVDAVLYETYLPLGRVLSLDVGQTLVF-DKEPTDPVMIKCGNIP 370

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           +    LG+V  +  IR+   +   + +L  F
Sbjct: 371 LTEGTLGKVDDSIAIRVAKNLRKPKMTLAAF 401


>gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
 gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
          Length = 366

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 28/273 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+     N  +  + ++   +++ LLG + E
Sbjct: 81  VEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGE 140

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY-DIDYLKKNTNRL 176
                 NR L+ +E  L       + AVL   +   +ES   + D Y +++  + + N +
Sbjct: 141 NFET--NRELTDIEVNL-------LDAVLRMIMQRLKESWAMITDMYPNVEAKESSPNVV 191

Query: 177 S----NEFVTTINMNMTIENVASSFVLIIPQ---ETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + + N +    L  P    E +L     +  ++  +S  KS N+ 
Sbjct: 192 QIVSQNEIVIMVVMEIIVGNSSGMINLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKE 251

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
              +   A   Y+        +     ++ + + LK G ++         AI+  + KE+
Sbjct: 252 LKTLIGRAEVLYE------AILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCIDKKEV 305

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           +  E+G      +I+I   I  D+  +KN L K
Sbjct: 306 FLAEVGLHRFRKSIKIEQLIRSDKDEIKNILEK 338


>gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
 gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
          Length = 334

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/246 (18%), Positives = 97/246 (39%), Gaps = 11/246 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     N  I C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  ST E+++  R +     V+ +           LE  Y    ++     ++ 
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVN----VICEEYKKAWHGIYPLELAYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V +    + I +++ S  + +P  TL  ++  L S S+Q  +       +    R+
Sbjct: 194 PSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYS-STQGDAIEVDRRWVKVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V +   +     T++ ++ ++ G  I  L RE      S  G  ++ C+ G    
Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMRPGDFIE-LDREPLIR-ASIGGVPVFECQYGTHND 310

Query: 295 NYTIRI 300
            Y IR+
Sbjct: 311 KYAIRV 316


>gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
 gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
          Length = 334

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/262 (17%), Positives = 101/262 (38%), Gaps = 11/262 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     N  I C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  ST E+++  R +     V+ +           LE  Y    ++     ++ 
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVN----VICEEYKKAWHGIYPLELAYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V +    + I +++ S  + +P  TL  ++  L S S+Q  +       +    R+
Sbjct: 194 PSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYS-STQGDAIEVDRRWVKVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V +   +     T++ ++ ++ G  I  L RE      S  G  ++ C+ G    
Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMRPGDFIE-LDREPLIR-ASIGGVPVFECQYGTHND 310

Query: 295 NYTIRITDRINFDQKSLKNFLH 316
            Y IR+   +   + S     H
Sbjct: 311 KYAIRVERSLRGGETSWMGEKH 332


>gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
 gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
          Length = 354

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 20/254 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   +HS       +   +              LV  L++N  G     
Sbjct: 78  DVAVGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
           + ++  R  +  E ++       +  VL Q     +E+   +      +YL    N  L+
Sbjct: 138 V-KIEGREFTPTENRV-------VQLVLKQAFKDMEEAWKAVLPV-KFEYLSSEVNPALA 188

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP 230
           N     E V     ++ ++       L +P   +  L+  L S   Q+   NQ E  +  
Sbjct: 189 NIVSPSEVVVVNTFHIELDGGGGDLQLTVPYSMIEPLREVLDS-GVQSDVGNQDERWMSS 247

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
              +    NV++  ++  +K  L ++  LK G V+     E    ++ AN    Y  +LG
Sbjct: 248 LREEIMGANVHLRCKLLDRKIKLSELAALKTGDVLQVEMPEHV--MIYANEVPTYRGKLG 305

Query: 291 RVGKNYTIRITDRI 304
              + Y ++I +++
Sbjct: 306 TSREKYAVKIAEKV 319


>gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
          Length = 326

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 29/259 (11%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS    +  KFS  +H+       +   +              LV  L++N  G     
Sbjct: 80  EISVGGIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVVDPKLVFILVDNFFGGDGRY 139

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ + T       L+Q  +  +++   + D  D +Y+    N + +
Sbjct: 140 HAKIEGREFTPTELRVIRMT-------LDQAFTDLKKAWAPVMDL-DFEYINSEVNPQFA 191

Query: 178 N-----EFVTTINMNMTIE------NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N     E V   + ++ ++      +V   + +I P   LL   +     Q+   +  E 
Sbjct: 192 NIVSPTEVVCVSSFHIELDGGGGDLHVTMPYSMIEPMRELLDAGI-----QSDRSDVDER 246

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            I     +     V + + +     +L+DV+ LK G +IP    E+   +L A G  +  
Sbjct: 247 WIRALRDEVKAAEVELSSMLTETTLSLEDVMRLKPGDIIPIDLPEQV--LLRAEGIPVLR 304

Query: 287 CELGRVGKNY-TIRITDRI 304
            + G V   Y  I++T+RI
Sbjct: 305 GKFG-VSDGYNAIKVTERI 322


>gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
 gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
          Length = 343

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 22/262 (8%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA--- 114
           V+ S     S +F   + +     +F+      W +   +  S++L+ ++++ LLG    
Sbjct: 78  VEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSLIYSIVDALLGGHVR 137

Query: 115 --SHETIP--QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170
             S  T P  +   R  + +E+ L +  +  I   L    S      P     +  + L+
Sbjct: 138 GDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFS------PLCAVNFHFERLE 191

Query: 171 KNTN-----RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
            N+      R  N  VT     + +E       +++P  TL     I L  Q   E    
Sbjct: 192 MNSRFAMICRAGNGVVTA-RFGIDMEGRGGDVDIVLPHATLEPVRDILLQ-QFMGEKFGH 249

Query: 226 DLI--DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           D I  +  AR+ +Q ++ +D  +  +   LKD++ L  G  +    +      L      
Sbjct: 250 DGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVSLRCGEHV 309

Query: 284 IYSCELGRVGKNYTIRITDRIN 305
           +++  +GR      ++I D +N
Sbjct: 310 LFTGRVGRKQGQVAVKIEDVLN 331


>gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           VDI+  S    KF   + S       S   +     N  +   + LV  L+EN  G +  
Sbjct: 77  VDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGS 136

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175
             P++  R  + +E+ + +R       V+   ++  +ES   + + + ++ ++   N   
Sbjct: 137 Q-PKVEGRDFTPIEQAIVER-------VVKIALANMEESWKPVHEVH-VELVRTEVNPQF 187

Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---- 227
                 ++ V  +   + +EN   S ++ +P       T+  + S+  +  QSE L    
Sbjct: 188 AAIVPPSDVVIVVTFEVELENAIGSLIVCLPY-----ATMEPIRSKLHASFQSERLEVDH 242

Query: 228 --IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
             I+ F  +  +  V +  R+     + + ++ L+ G +I     E         G   +
Sbjct: 243 VWINRFKERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKF 302

Query: 286 SCELGRVGKNYTIRI 300
               GRV  N + ++
Sbjct: 303 QGLPGRVKGNKSFQV 317


>gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 337

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 27/286 (9%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E ++     L++  L  + +   DL    S       KF+  +HS       + 
Sbjct: 49  GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV T+++N  G       ++  R  +  E ++ +  + Q  A 
Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVL 199
           L +  +   +         D +Y+    N   +N     E+V     ++ +E       +
Sbjct: 165 LKEAWAPVMD--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256
            +P   L     +  +      N  +D  +   R+  QL+   V + + +  K+ TL+ +
Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMTLRQL 274

Query: 257 VTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301
             LK+G V+P    E    + L      +++ E G    N  ++IT
Sbjct: 275 TGLKVGDVLPI---ELPAQVPLCVEDIPLFTGEFGVSNGNNAVKIT 317


>gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
 gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
          Length = 403

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 48/252 (19%), Positives = 101/252 (40%), Gaps = 16/252 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+++  +  S +F   +++     +        W ++  +   +NL    L+ LLG    
Sbjct: 137 VEVTLDNITSVRFGDYLNAIPLPTLLGVFKADLWENSGLVTVDSNLAYATLDLLLGGKRG 196

Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173
           T   +L  R  +++E  L +R    +  +L    ++ Q  SP     + ID L+ N    
Sbjct: 197 TTTIRLDGRPFTSIEMSLVRR---MLEIILGDLEASFQPLSPVR---FQIDRLESNPRFA 250

Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--D 229
              R +N  +  I++ + +E       ++ P  T+     + L S    E    D +   
Sbjct: 251 TITRPANAAI-LIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQS-FMGEKLGRDHVWEG 308

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
             A + +Q  V ++  ++     LK V+ L++G  I F  +      L      +    +
Sbjct: 309 HLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTILFDAKPTDLITLRCGDWALSQGRI 368

Query: 290 GRVGKNYTIRIT 301
           GR+  +  +++T
Sbjct: 369 GRLEDSIAVQVT 380


>gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
 gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
 gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
 gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
          Length = 335

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NL+  +++NL G       ++  R  + VE+++ +R    +  V        Q   P   
Sbjct: 121 NLIFLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQR---MLQLVFEHYARAWQPVYPIDF 177

Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           +F  ++   +  N  + NE V T   ++ + N      + +P  T+++     L+S  + 
Sbjct: 178 EFLRMEMHTEFANVATPNEVVVTTTFSLELGNNGGDVHICMPY-TMIEPIRDRLTSAIQG 236

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +   +++     V +   +      + D++ +K+G VIP    +   A   
Sbjct: 237 EALEVDKRWLRLLSQQVQTAEVELIADLATANVQVSDILNMKVGDVIPLELDDVVTA--K 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306
            +G  +  C  G     Y +R+   +N 
Sbjct: 295 VDGVPVMECNYGTFNGQYALRVNRMLNM 322


>gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
 gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
          Length = 372

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 28/272 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+     +  I  + ++   +L+ LLG   E
Sbjct: 83  VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGE 142

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176
             P   +R  S +E  L          +L   +ST +++  P +E F +I+  + + N +
Sbjct: 143 --PFDASREFSDIELSL-------FETILRVMMSTLKDAWGPVMEIFPNIESKESSPNVV 193

Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + I   +    +   +I  E +L     +  +++ +S  KS N  
Sbjct: 194 QIVAQNEIVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLASRDLMLNETSTKKSRNTE 253

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
             ++   A+      V I+  +   + TL+DV+ L+ G ++           +  +GK+ 
Sbjct: 254 LHVLLGGAK------VGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDR 307

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +  ++G      ++++T+ I+ ++ ++K  L 
Sbjct: 308 FRGKIGLRRFRKSVQVTEIIDTERDAVKRALE 339


>gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
           ES-2]
 gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
           ES-2]
          Length = 329

 Score = 37.7 bits (86), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 17/207 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  +++N+ G       ++  R  +  E+    R I ++ AV+ +  +   E+   LE
Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGREFTQTEQ----RIIQKMLAVVFETYAKAWETVYPLE 176

Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214
                ++++   N         NE V     ++ +     +F + +P  TL     L+  
Sbjct: 177 ----FEFVRSEMNPQFANIATPNEVVIVTTFDIELGGNGGAFHICMPYSTLEPVKDLLFN 232

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           + Q +     +  +   +R+     + +   +     TL+ V+ +++G VIP    E   
Sbjct: 233 NIQGEHLAVDKRWLQLLSRQVQCAEIELAATLGQANITLERVLKMRVGDVIPLNVDENIT 292

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
           A  S +G  I  C+ G     Y ++I 
Sbjct: 293 A--SIDGVPIMECKYGVFNNQYALKIV 317


>gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 334

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  I C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  S  E+++  R +  I A   +           LE  Y    ++     ++ 
Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYP----LELEYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V +    + I +++ +  + +P  TL  ++  L S S+Q  S       +    R+
Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V +   +     T++ ++ +K G  I      +  A  S  G  I+ C+ G    
Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNS 310

Query: 295 NYTIRITD 302
            Y IRI +
Sbjct: 311 KYAIRIEE 318


>gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
 gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
          Length = 334

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  I C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  S  E+++  R +  I A   +           LE  Y    ++     ++ 
Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYP----LELEYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V +    + I +++ +  + +P  TL  ++  L S S+Q  S       +    R+
Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V +   +     T++ ++ +K G  I      +  A  S  G  I+ C+ G    
Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNS 310

Query: 295 NYTIRITD 302
            Y IRI +
Sbjct: 311 KYAIRIEE 318


>gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 337

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 52/286 (18%), Positives = 103/286 (36%), Gaps = 27/286 (9%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E ++     L++  L  + +   DL    S       KF+  +HS       + 
Sbjct: 49  GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV T+++N  G       ++  R  +  E ++ +  + Q  A 
Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   +         D +Y+    N          E+V     ++ +E       +
Sbjct: 165 LKEAWAPVMD--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256
            +P   L     +  +      N  +D  +   R+  QL+   V + + +  K+ TL+ +
Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMTLRQL 274

Query: 257 VTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301
             LK+G V+P    E    + L      +++ E G    N  ++IT
Sbjct: 275 TGLKVGDVLPI---ELPAQVPLCVEDIPLFTGEFGISNGNNAVKIT 317


>gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
 gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
          Length = 338

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 24/212 (11%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  +++N+ G       ++  R  +  E+++       I  +LN   +   E S + +
Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRI-------IQGLLNVVFT---EYSKSWK 170

Query: 162 DFYDI--DYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
             YDI  +Y++   N + +N     E V +    +      +   +  P  ++L+     
Sbjct: 171 PVYDINFEYIRSEMNSQFANIATPSEIVVSTTFTLEFGGATADMHICFPY-SMLEPIRDL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L S  +S+  S D   I    ++     V I   +   K TL  ++ LK+G VIP    +
Sbjct: 230 LYSTMQSDQLSSDKRWIGTLRKQLQGAEVEIVALLGSGKITLGQILKLKVGDVIPLHIPD 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           K  A++ +    +  C  G+    Y +++ DR
Sbjct: 290 KIEALVDS--VPLMECTYGQQSGQYALKV-DR 318


>gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
 gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
          Length = 332

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 48/271 (17%), Positives = 108/271 (39%), Gaps = 17/271 (6%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           Y + L      ++   V ++  S     +   I S  +  + +          F I  + 
Sbjct: 62  YARLLTTQLSAQLRTYVQVAVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEVNP 121

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           N+   +L+ +LG   E + ++   SL+ +E K+       +S +  + + T +E+  ++ 
Sbjct: 122 NIAYAMLDRMLGGQGEALNKV--ESLTEIETKI-------LSQLFQRSLETLREAWESVV 172

Query: 162 DFYDI-DYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLIS 213
           D   + D ++ N   L     NE V  I+++ TI   +    + +P    E++L    I 
Sbjct: 173 DLDPVMDEIEVNPQFLQLVSPNETVVVISLSTTIGEASGMMNICLPHVVIESILPKLSIH 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           L  Q K +++    +    +   Q  +++   +   + ++ + + L    VI        
Sbjct: 233 LWMQQKKKDRQPGELSALEKNLKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             ++    +  Y  + G+V     ++ITD I
Sbjct: 293 PLLVKLGNEPKYYSQPGKVKGKLAVQITDSI 323


>gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
          Length = 353

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 110/271 (40%), Gaps = 26/271 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+        +  + ++   +++ LLG   +
Sbjct: 79  VEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGD 138

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
             P   +R  S +E  L    + QI   L +  S+  E  P+      +D  + + N + 
Sbjct: 139 --PYENSREFSDIELNLLDTLLRQIMQNLKEAWSSITEIFPS------VDAKESSPNVVQ 190

Query: 178 ----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQSE 225
               NE V  + M + I + +    +   +I  ET+L     +  ++S +S  KS N+  
Sbjct: 191 IVAQNEIVIMVVMEIIIGHSSGMMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKEL 250

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
             +   A      NV +   +     +LK+V+ L++G ++          ++S +G+E Y
Sbjct: 251 QALIAGA------NVVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVSVDGREKY 304

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +G      T++I + I  ++  +K  L 
Sbjct: 305 IASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335


>gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
 gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
          Length = 334

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  I C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  S  E+++  R +  I A   +           LE  Y    ++     ++ 
Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIY----PLELEYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V +    + I +++ +  + +P  TL  ++  L S S+Q  S       +    R+
Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V +   +     T++ ++ +K G  I      +  A  S  G  I+ C+ G    
Sbjct: 253 IQAAEVTLVAELAQADATVEQLLAMKPGDFIELDREPRIRA--SIGGVPIFECQYGTHNS 310

Query: 295 NYTIRITD 302
            Y IRI +
Sbjct: 311 KYAIRIEE 318


>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
          Length = 327

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 57/292 (19%), Positives = 115/292 (39%), Gaps = 37/292 (12%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++ + +DV     + +   +S   ++     +    ++
Sbjct: 52  RTLEIIFEHFGRLLATNLPGYLRKTVSVDV----VNSEVVIYSEFSNALSNPVLLGVVTM 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  ++NL   +++ LLG S  T+ +   R  S +E  + +R       +L +
Sbjct: 108 PPLKGNIIMEMASNLGYAIIDRLLGGSGNTMDK--ARDFSEIELTILERIFTICVNLLQE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---------------NV 193
                 ++SP LE        +  TN   ++F   I+ + TI                N+
Sbjct: 166 PWQNVVQTSPRLE--------RIETN---SQFAQIISPSETIAIVTLSIKIGEVEGLMNI 214

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              FV + P    L T     + Q+K +   +D I+    +     + +   +   + ++
Sbjct: 215 CLPFVTLEPVMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRA---QIPMKAVLGHSRISV 271

Query: 254 KDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            D V L++G +I    + +    +   N K+ ++   G     Y IRIT+ I
Sbjct: 272 GDFVNLQLGDIIRLDRKVDDELEVYVGNIKK-FAALPGYSEDKYAIRITEVI 322


>gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
 gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
          Length = 328

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 56/281 (19%), Positives = 119/281 (42%), Gaps = 23/281 (8%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +  +D+++ I   + +    S +I SF    V     +
Sbjct: 53  RTFQMIHENFGRALSTYLSGRLRTFVDVEISIDQLTYEEFIRSVMIPSF---IVIFTGDV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S+ F +    +L  T+L+ ++G   +  P   NR+ + +E  + +R +  I  +L Q
Sbjct: 110 FEGSAIFEMRL--DLFYTILDIIMGGPGDNPP---NRTPTDIETSIMRREVTNILTLLAQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSFVLIIPQE 204
             S  Q   P++E+      ++ N   +     NE V  +  +++     +SF+ +    
Sbjct: 165 AWSDFQYFIPSIEN------IETNPQFVQIVPPNEIVLLVTASVSWGEF-TSFINVCWPF 217

Query: 205 TLLKTTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           +LL+  L  LS++     +   + E+ ++     +  + + +   I     TL++V+ L+
Sbjct: 218 SLLEPFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPLTVQAVIGEAWLTLREVLNLQ 277

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            G VI      K    +   GK  +    G+    Y ++IT
Sbjct: 278 EGDVIRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKIT 318


>gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
 gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
          Length = 335

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 30/223 (13%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  ++++L G       ++  R  +T E+++ +R       +LN  + +  +S    +
Sbjct: 122 NLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRR-------LLNLTLESYGKS---WD 171

Query: 162 DFYDID--YLKKNTNRL------SNEFVTTINMNMTIE------NVASSFVLIIPQETLL 207
             Y I+  Y++   +        +NE V   + ++         N+   + +I P   LL
Sbjct: 172 PVYPIEFEYVRSEMHTKFASITGNNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLL 231

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              L   + +   +  ++ L    +R+    ++++        +++++++ LK+G V+P 
Sbjct: 232 TRPLQETTLEEVDQRWAQQL----SRQVRSADIDVVAEFARIPSSIRELMRLKVGDVLPV 287

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              E   A  S +G  +  C  G     Y +R+ +    D +S
Sbjct: 288 TVPETIVA--SVDGVPLMECGYGVFNGQYALRVQNMFTHDTES 328


>gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 363

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 48/266 (18%), Positives = 104/266 (39%), Gaps = 20/266 (7%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    Q  KF   +H+       +            I     LV  L++N  G     
Sbjct: 78  EVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E+++ +  +  I     +  +   + S         +YL    N  ++
Sbjct: 138 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 189

Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
           N     E V   + ++ ++     F + +P  ++L+     L +  +S+ +  DL    A
Sbjct: 190 NIVSPTEVVVISSFHIELDGGGGDFHIALPY-SMLEPIRELLDAGVQSDTEDTDLRWSKA 248

Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
            +   ++V ++    L +   TLK ++ LK G +IP    E     +       +  ++G
Sbjct: 249 LRDEIMDVEVELSTQLLEVDLTLKQIMELKAGDIIPVEMPEHITVFVEE--LPTFRAKMG 306

Query: 291 RVGKNYTIRITDRINFDQKSLKNFLH 316
           R   +  ++I+++I     S+K+ LH
Sbjct: 307 RSRDSVALQISEKIK-RPDSVKSELH 331


>gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
 gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
          Length = 337

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 16/210 (7%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  +++NL G       ++  R  +  E+++ +R +            T     P   
Sbjct: 125 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLEMTLTSYGNAWRTVY---PIET 181

Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQN 218
           ++   +   K  N  + NE V T   ++ +  V     + +P   +  LK  L++     
Sbjct: 182 EYVRSEMHTKFANVATVNEAVITTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDE 241

Query: 219 KSENQSEDLIDPFARKTYQL---NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           K  ++S       A+ + QL   +V +       ++T+ +V+ L+ G V+P    E    
Sbjct: 242 KEVDKSW-----LAKLSTQLRAADVEVVAEFTHVQSTVAEVLALRAGDVLPIELPEHVFG 296

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               NG  +  C  G +   Y +R+   IN
Sbjct: 297 --KVNGVPVMQCGFGTINGQYALRVERMIN 324


>gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 51/285 (17%), Positives = 102/285 (35%), Gaps = 25/285 (8%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E ++     L++  L  + +   DL    S       KF+  +HS       + 
Sbjct: 49  GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV T+++N  G       ++  R  +  E ++ +  + Q  A 
Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFAD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   E         D +Y+    N          E+V     ++ +E       +
Sbjct: 165 LKEAWAPVME--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256
            +P   L     +  +      N  +D  +   R+  QLN   V + + +  K+ +L+ +
Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLNTAEVTLSSVLASKRMSLRQL 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
             LK+G ++P     +    L      +++ E G    N  ++IT
Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPMFTGEFGVSNGNNAVKIT 317


>gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp.
           Marseille]
 gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp.
           Marseille]
          Length = 332

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 17/206 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  L++NL G       ++  R  +  E+++ +R    I  ++ +  + + E    +E
Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQR----ILGIIFETYAKSWEPVYPVE 175

Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214
                +Y++   N         NE V      + +  V+       P   +     L++ 
Sbjct: 176 ----FEYIRSEMNTQFANIATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTS 231

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           S Q ++    +  I    ++     V I   +   K TL D++ ++ G +IP    +   
Sbjct: 232 SMQGETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTIT 291

Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300
           A    +   +  C  G++   Y +R+
Sbjct: 292 A--EVDSVPVMECSYGKLNGQYALRV 315


>gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 348

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165

Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266
                L +  +S+   +D+    A +   ++V ++ R  L     +L+D++ L+ G +IP
Sbjct: 223 PIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIP 282

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       Y  ++G+ G N  ++IT ++
Sbjct: 283 IDVPE--SATVFVEDLPTYRAKMGKSGDNIALKITQKL 318


>gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
 gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
          Length = 340

 Score = 37.0 bits (84), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/258 (17%), Positives = 97/258 (37%), Gaps = 28/258 (10%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D++    Q  KF   IH+       +   +              LV  L++N  G     
Sbjct: 76  DVASGGVQILKFGEYIHTLYVPTSLNLVKIRPLRGTGLFILDAKLVFKLVDNFFGGDGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177
             ++  R  +  E ++ +  + Q+   + +  +   +         D +Y+    N  ++
Sbjct: 136 -AKIEGREFTPTEIRIVQMVLEQVFHDMKEAWNAVMK--------VDFEYVNSEVNPAMA 186

Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           N            F   ++      +VA  + +I P   +L   +     Q+  ++  E 
Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGDMHVAMPYSMIEPIREVLDAGV-----QSDVDDVDER 241

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            I    +   +  V ++  +  +K +L+ +  LK G VIP    E     ++ANG  I+ 
Sbjct: 242 WISALQQDILEARVPLNAAVVRQKISLRSLSRLKPGDVIPVELPETIT--VTANGVPIFI 299

Query: 287 CELGRVGKNYTIRITDRI 304
            ++G+   N  ++I D+I
Sbjct: 300 AKVGQCNGNLALKIVDKI 317


>gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY]
 gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY]
          Length = 334

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 11/248 (4%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  + C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177
             ++  R  S  E+++  R +  I A   +     Q   P LE  Y    ++     ++ 
Sbjct: 138 QTRIEGRDFSATEQRVINRLVDVICAEYKK---AWQGIYP-LELAYQRSEMQPQFANIAT 193

Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E V +    + I ++A +  + +P  TL  ++  L S S Q  +       +    R+
Sbjct: 194 PSEIVVSTAFQLEIGDLAGAIHICMPYATLEPIRDVLYS-SVQGDAIEVDRRWVRVLTRE 252

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V +   +     T++ ++ +K G  I  L RE      S  G  ++ C+ G    
Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIE-LEREPRIR-ASIEGVPVFECQYGTHNS 310

Query: 295 NYTIRITD 302
            Y IRI +
Sbjct: 311 KYAIRIEE 318


>gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146]
 gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella
           ictaluri 93-146]
          Length = 337

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV   ++NL G       ++  R  +  E+++       I ++L   +   +++   + 
Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRV-------IQSMLRLALDAYRDAWSAIF 175

Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212
              DI+Y++        N     N+ V T    + +  ++  F + IP   +  L+  L+
Sbjct: 176 KL-DIEYVRSEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLV 234

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +   +N S+ + +   D  +++     + +          L DV+ L+IG V+P    ++
Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVADFVDIPLRLSDVLKLQIGDVLPIDRPDR 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             A  + +G  + +C+ G     Y +R+   IN
Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324


>gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
 gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum
           centenum]
 gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
          Length = 352

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 9/264 (3%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+++     S +F   +       + +      W ++  +   + L+ ++++ LLG    
Sbjct: 94  VEVTVQQIASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRS 153

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
               +  R  + +E+ LA+R I  +   L    S         E           T   S
Sbjct: 154 DPAPIDGRPYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERVETTPQFAVITR--S 211

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK--SENQSEDLIDPFAR 233
           N    +    + ++       L+IP  TL  ++  L+ +    K   ++  E  +    R
Sbjct: 212 NNACISARFQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGRDSMWETHLKNELR 271

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +T   +V++   +   + +L D++  K G  +    R    A+L+     ++  E+G+  
Sbjct: 272 RT---SVDLSAVLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRN 328

Query: 294 KNYTIRITDRINFDQKSLKNFLHK 317
            N  IRI   +    + +   L +
Sbjct: 329 GNVAIRIDADLGAQDEVIHGLLQR 352


>gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
 gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
 gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60]
          Length = 337

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV   ++NL G       ++  R  +  E+++ +R       +L   +   +++   + 
Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQR-------MLRLALDAYRDAWGAIF 175

Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212
              D++Y++        N     N+ V T    + +  ++  F + IP   +  L+  L+
Sbjct: 176 KL-DVEYVRSEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLV 234

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +   +N S+ + +   D  +++     + +          L DV+ L+IG V+P    ++
Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVANFVDVPLRLSDVLKLQIGDVLPIDRPDR 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             A  + +G  + +C+ G     Y +R+   IN
Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324


>gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
 gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
          Length = 359

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 25/257 (9%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           VD+ Y S     FS    S          S  ++S +  +    +L   +++ LLG    
Sbjct: 81  VDVKYASIDQITFSEFQKSLNSPTFIVIFSSEAFSGSAILQMGLDLGYVIIDRLLGGPGN 140

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL- 176
           T+ ++  R  + +E  + ++  A +  +L++  S  +E   NLE+      L+ N   + 
Sbjct: 141 TLEEI--RPPTEIEMNILRKESAVMLRMLSKSWSNIEEFDANLEN------LETNPQFVQ 192

Query: 177 ---SNEFVTTINMNMTIENVASSFVLIIPQETLLK-----TTLISLSSQNKSENQSEDLI 228
               NE    I +++TI+NV     L  P  +L       TT +  +S   +E   E+L 
Sbjct: 193 VAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLEPLNDKLTTRMWTTSYRHTEEFKENL- 251

Query: 229 DPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
               R++  L+    + I L KT   L D + L++G VI           L    + I+ 
Sbjct: 252 ----RQSLLLSKLNLSAI-LGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIEERPIFK 306

Query: 287 CELGRVGKNYTIRITDR 303
             +G+    Y+++I ++
Sbjct: 307 VNVGKSKGFYSVKIVEK 323


>gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
 gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
          Length = 327

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 114/276 (41%), Gaps = 26/276 (9%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   V  +  + +   +   IHS     + +  +L           + 
Sbjct: 62  FARVLTTHFSAQLRTYVQFTVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEVNP 121

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCISTTQESS 157
           N+   +L+ LLG   E + ++ N  L+ +E +    L KR   Q  A          ES 
Sbjct: 122 NIAYAMLDRLLGGPGEGMNKIEN--LTEIETRILTQLFKRAFVQYGAAW--------ESI 171

Query: 158 PNLEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
             +E  Y  D L+ N   L     NE V  +++ +T+  V+ +  + +P  T L+  +  
Sbjct: 172 AEIEAEY--DDLEINPQFLQLVSPNETVILVSIYVTVGEVSGTLNVCLPFVT-LEPIIPK 228

Query: 214 LSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVVTLKIGQVIPFL 268
           LSS     + + +S D  +    +T  +   +D +  L +T L   +++ L++G  +   
Sbjct: 229 LSSHFWMQQEKRKSADNQESEHMQTQLMGSIVDLKAVLGQTELSFGELLHLEVGDCLSLQ 288

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            R      L  + ++++    G  GK+  +++  RI
Sbjct: 289 TRTSDPVELFVDDRKMFKARPGLNGKHLALQVLQRI 324


>gi|330447962|ref|ZP_08311610.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492153|dbj|GAA06107.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 627

 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 16/123 (13%)

Query: 94  NFFIGCSNNLVITLL---ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
           N F+G  + +V  L    E+L   SH T  Q   RS      +L +  I  ++  +N+  
Sbjct: 339 NQFVGNMHQMVTRLRHVSESLNQQSHVTASQAEERS---ARIQLQQDEINMVATAINEMA 395

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           + TQE + N E          NT R S E VT  N   T  N +   +  + QE    TT
Sbjct: 396 AATQEIASNAE----------NTARTSEETVTASNHGATQVNQSQQSISTLAQEVETATT 445

Query: 211 LIS 213
           +IS
Sbjct: 446 VIS 448


>gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105]
 gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105]
          Length = 348

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 42/225 (18%), Positives = 93/225 (41%), Gaps = 23/225 (10%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  +++NL G       ++  R  +  E+++  R +  I     +  +      P   
Sbjct: 120 SLVFAVIDNLFGGDGRFHTRVEGRDFTQTEQRIIARMLEVIREEFVKAWAPVFPLKP--- 176

Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
                +YL+   + + +N     E V T + ++ +     S  + IP  T+     +  S
Sbjct: 177 -----EYLRSEMHTQFANIATPSEIVVTTSFSIELGAGGGSLHICIPYSTMEPIRDLLYS 231

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
           S    + + +       +K  Q+   +D   +L  T  T+ D++ L+IG VIP     + 
Sbjct: 232 SMQGDQAEPDKRWVTMLKKQVQM-AEVDLVASLASTQLTVADIMELRIGDVIPI----EI 286

Query: 274 CAILSA--NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             ++ A  +   +++C  G  G  Y +++ + +    +S  + L+
Sbjct: 287 DKVIEARVDNVPVFNCSYGTSGGQYALKVEEVLAVSNESHADALN 331


>gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
 gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
          Length = 336

 Score = 36.6 bits (83), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 39/220 (17%), Positives = 92/220 (41%), Gaps = 29/220 (13%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNL 160
           NLV  +++N+ G       ++  R  +  E+++       I  +LN   +   ++ +P  
Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRI-------IQGMLNVVFTEYAKAWAPVF 173

Query: 161 EDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASS------FVLIIPQETLLK 208
           +   +++Y++   N + +N     E V + + ++ +    +       + ++ P   LL 
Sbjct: 174 K--LELEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYSMVEPIRDLLY 231

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           +T+     Q+    Q    I   +R+     V +   +   + TL+D+V +++G VIP  
Sbjct: 232 STM-----QSDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPLQ 286

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             E   A  + +G  +  C  G     +  ++   +  D+
Sbjct: 287 VSELLQA--TVDGVPVLECRYGTQNGQFAFKVDRFLGPDE 324


>gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
 gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
          Length = 331

 Score = 36.6 bits (83), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 32/259 (12%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           D+S +  Q  KF   +H+       +   +              LV  L++N  G     
Sbjct: 76  DVSTSGVQIMKFGEYVHTLYVPTSLNLCKIRPLRGTSLFVLDAKLVFKLVDNFFGGQGRH 135

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  +  E ++       +  +LNQ     QE+   +        LK N   LS+
Sbjct: 136 -AKIEGREFTPTENRI-------VQMMLNQVFHDMQEAWQTV--------LKVNFEYLSS 179

Query: 179 EFVTTI-------------NMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQS 224
           E   ++               ++ ++         +P   +     ++    Q+  ++  
Sbjct: 180 EVNPSMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDTD 239

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           E  +         ++V +++ I  +  +L++V   K G +IP    E     ++ANG  I
Sbjct: 240 ERWVSALQEDIKTVSVAVNSTICRRHISLREVAKFKAGDIIPIEMAEHLT--VTANGIPI 297

Query: 285 YSCELGRVGKNYTIRITDR 303
           Y+  LG       +RI  R
Sbjct: 298 YTATLGTRDDKLALRIHGR 316


>gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9]
 gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium
           profundum SS9]
          Length = 348

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I     LV  L+EN  G       ++  R  +  E+++       +  +L       +E
Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165

Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208
           + SP +    + +YL    N  ++N     E +   + ++ ++     F +++P  ++++
Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPY-SMVE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266
                L +  +S+   +D+    A +   ++V ++ R  L     +L+D++ L+ G +IP
Sbjct: 223 PIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIP 282

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               E   A +       Y  ++G+ G N  ++IT ++
Sbjct: 283 IDVPE--SATVFVEDLPTYRAKMGKSGDNIALKITQKL 318


>gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16]
 gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16]
          Length = 339

 Score = 36.6 bits (83), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 10/207 (4%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           NLV  +++NL G       ++  R  +  E+++ +R +    A       T     P   
Sbjct: 124 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVH---PIET 180

Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQN 218
           ++   +   K  N  + NE V T   ++ +  V     + +P   +  LK  L++     
Sbjct: 181 EYIRSEMHPKFANVATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDE 240

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           K  ++    +   + +     V +       ++T+ +V+ ++ G V+P    EK      
Sbjct: 241 KEVDKG--WVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEKVFG--K 296

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305
            +G  +  C  G +   Y +R+   IN
Sbjct: 297 VDGVPVMQCGFGTMNGQYALRVERMIN 323


>gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
 gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
          Length = 339

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 45/261 (17%), Positives = 111/261 (42%), Gaps = 25/261 (9%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASL----SSWSSNFFIGCSNNLVITLLENLLGA 114
           ++S  + +  ++    ++  +N V +  ++    SS +    I  S  L+++L++ +LG 
Sbjct: 79  ELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPDSSKNPPLLINASMTLMLSLIDRMLGG 138

Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174
             +      + + + +E  L +R I  I   L    S    S  NL   +++  L++N +
Sbjct: 139 VGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKDSWS----SYINLN--FELSRLEENPS 192

Query: 175 RLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-------SLSSQNKSENQ 223
                  +E +  + +++ ++  +    + IP   L+    I       ++  +  S++ 
Sbjct: 193 MFQEIGVDETIVIVVLDVDMKECSGRLNVCIPGNLLMNIFDIMDKRKHSAMGDEANSQDN 252

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
            +++++         ++ +  ++     TL DV  L +G VI     + +   L   G+ 
Sbjct: 253 KQEIMNSIKAS----DLLVRAQVGESMITLDDVYNLHVGDVINLGTPKDSDVQLYVEGQP 308

Query: 284 IYSCELGRVGKNYTIRITDRI 304
            +  +LG   +N  +RI D +
Sbjct: 309 WFRGQLGVHKRNVAVRIEDHV 329


>gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
          Length = 336

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 40/266 (15%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           DI+ TS     +   + S  +   F+  S+     N  +  + +LV  +++ LLG + + 
Sbjct: 81  DITLTSVDQMTYGEFLMSLPDPTSFNIISMIPMEGNAVLEINPSLVFPIVDKLLGGTGK- 139

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTTQ------ESSPNLEDFYDIDY 168
            P    R L+++E+ +    +  I      V  Q I   +      E+SP++        
Sbjct: 140 -PLFQTRELTSLEQHIMDGILGLILKDLEEVWRQIIPNIRLKKELSENSPHIIQIVS--- 195

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN-------KSE 221
                    NE V  +   +    V     L IP   +L+  L  +SS +         +
Sbjct: 196 --------QNEVVILVVCEVKFGEVLGMMNLCIPA-IVLEPVLGKISSSDWLIGAKKGLQ 246

Query: 222 NQSEDLIDPFARKTYQLN-VNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            + ED I       + LN   + T I L   K T++DV+ L+ G ++ F  ++     + 
Sbjct: 247 GEKEDEI------MHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIH 300

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304
            N K+ +  E+G +G    ++IT  I
Sbjct: 301 FNNKQKFLGEVGTLGVKKAVKITQFI 326


>gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
 gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
          Length = 376

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 32/240 (13%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++  TS     +S  I S +    F+  + S    N  +  + +++  +++ LLG   E
Sbjct: 102 VEVKLTSVDQLTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGGGKE 161

Query: 118 TIPQLYNRSLSTVEKKLAKRT---------IAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           + P +  R L+ +E  L  R          IA  + +  Q      ES+P L        
Sbjct: 162 SSP-VSRRPLTEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVESNPQLVQIVP--- 217

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP-------QETLLKTTLISLSSQNKSE 221
                    NE +  I+  +TI +V     L IP          L   T  +  +   SE
Sbjct: 218 --------PNEVIVLISFELTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSE 269

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
              + L    + +    +V +   +   K T +D++ L++G VI      +    +S NG
Sbjct: 270 ESRQAL----STQIDGASVEVGVTLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNG 325


>gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 350

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 28/217 (12%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  +++NL G     + +   R  +  E+++ +R +      L    S  +   P   
Sbjct: 122 SLVFMVVDNLFGGDGRFLTKSEGREFTHTEQRIIRRLLG---LALEAYQSAWKSVYP--- 175

Query: 162 DFYDIDYLK-------KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
              +IDYL+        N     NE V     ++ + N+AS F +++P   L+   L SL
Sbjct: 176 --LEIDYLRSEMQAKFANITSSPNEIVINSTFHLEVGNLASDFNIVMP--YLMIEPLRSL 231

Query: 215 ------SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
                  S    E Q    +   A +  Q  + +          +  V+ LK+G V+P  
Sbjct: 232 LNGPLNDSHPDEERQWGKRM---ASEIKQSQIELIADFAGIDLCIGQVMALKVGDVLPIE 288

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             E   A    +G  +  CE G       +++ + I+
Sbjct: 289 LPETVVA--RVDGVPVMRCEYGSRNGQRALQVKELID 323


>gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
 gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
          Length = 337

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 50/285 (17%), Positives = 102/285 (35%), Gaps = 25/285 (8%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E ++     L++  L  + +   DL    S       KF+  +HS       + 
Sbjct: 49  GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV T+++N  G       ++  R  +  E ++ +  + Q  A 
Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   E         D +Y+    N          E+V     ++ +E       +
Sbjct: 165 LKEAWAPVME--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256
            +P   L     +  +      N  +D  +   R+  QL+   V + + +  K+ +L+ +
Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMSLRQL 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
             LK+G ++P     +    L      +++ E G    N  ++IT
Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVKIT 317


>gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 322

 Score = 36.2 bits (82), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
           E V  + M + IE +   F    PQ   L    I  S  +  E  + D  +   +K  ++
Sbjct: 188 EKVIVVEMILDIEGLEVPFSFAFPQMMFLPLKDIIFSETSSLEIPA-DWKENILKKLSKV 246

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYT 297
            +N    ++     +++++ L++G  I  L+ +K  +I L   GK  ++ +LGR  K Y 
Sbjct: 247 ELNFTLELSRFTMLVEELLNLEVGSDI-ILNVKKDDSINLMVEGKPKFTAKLGRYDKKYA 305

Query: 298 IRITDRINFDQ 308
             I DR+  ++
Sbjct: 306 AMIVDRVKGEE 316


>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
 gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
          Length = 367

 Score = 36.2 bits (82), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 111/273 (40%), Gaps = 28/273 (10%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I   S     +   + S      F+  S+     N  +  + ++   +++ LLG + E
Sbjct: 79  VEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGE 138

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY-DIDYLKKNTNRL 176
                 +R L+ +E  L       + A+L   +   +ES   + D Y +++  + + N +
Sbjct: 139 GFEA--SRELTDIEVNL-------LDAILRMMMQRLKESWSMITDMYPNVEAKESSPNVV 189

Query: 177 S----NEFVTTINMNMTIENVASSFVLIIPQ---ETLL-----KTTLISLSSQNKSENQS 224
                NE V  + M + + N +    +  P    E +L     +  ++  +S  KS N+ 
Sbjct: 190 QIVSQNEIVIMVVMEIIVGNSSGMINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKE 249

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
              +   A   Y+        +     ++ + + LK G ++         AI++ + KE+
Sbjct: 250 LKTLIGRAEVLYE------AILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEV 303

Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           +  E+G      +IRI + I  D+  +KN L +
Sbjct: 304 FLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 336


>gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM
           6578]
          Length = 341

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 36/72 (50%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + VN+   +      ++D+++++ G VI    R K   +L    +  + C  GRVGK   
Sbjct: 259 VEVNLVVEVGSMNLKMRDILSIQKGDVIMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLA 318

Query: 298 IRITDRINFDQK 309
           +++ ++I   Q+
Sbjct: 319 VQLVEKIEESQE 330


>gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 337

 Score = 35.8 bits (81), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 89/213 (41%), Gaps = 20/213 (9%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV   ++NL G       ++  R  +  E+++ +R       +L   +   +++   + 
Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQR-------MLRLALDAYRDAWGAIF 175

Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212
              D+ Y++        N     N+ V T    + +  ++  F + IP   +  L+  L+
Sbjct: 176 KL-DVKYVRSKIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIGTLRELLV 234

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +   +N S+ + +   D  +++     + +          L DV+ L+IG V+P    ++
Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVANFVDVPLRLSDVLKLQIGDVLPIDRPDR 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             A  + +G  + +C+ G     Y +R+   IN
Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324


>gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 335

 Score = 35.8 bits (81), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 96/240 (40%), Gaps = 15/240 (6%)

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +   I S  +  V     +   S N  +  + +LV  +++ +LG   E I +   R L+ 
Sbjct: 90  YDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRK--PRDLTD 147

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E+ + +R + +I   L +  ST  +     E      +  +       + V  + + + 
Sbjct: 148 IERTVVERVMLKILEHLEESWSTVVDIRFRFESMESNPFFVQICP--GTDMVLLVTLKVQ 205

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQN-------KSENQSEDLIDPFARKTYQLNVNI 242
           +        L IP   +++  +  LSSQ+       K+   + ++I+    +  ++ V +
Sbjct: 206 VGEAEGIMNLCIPY-FVMEPMIDKLSSQHWFASTGRKNVEGAREIIEA---RLSKVAVPV 261

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +     +L DV+ L+ G VI    +      L    +  + CE G   K+Y  R+ +
Sbjct: 262 ALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLE 321


>gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
 gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum]
 gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
          Length = 362

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 16/251 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V++S     S +F   ++S     + +      W +   +   + L+ ++++ LLG    
Sbjct: 109 VEVSLDQISSVRFGDYLNSIPLPAMLAVFKAEEWDNYGLMVIDSALIYSIVDVLLGGRRG 168

Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174
           T   ++  R  +T+E+ L +R    +  VL+   +     SP     +  D L+ N    
Sbjct: 169 TAAMRIEGRPYTTIERNLVER---MVHVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 222

Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229
              R +N  V  + + + +E+      L+IP  TL  ++  L+ +    K    S     
Sbjct: 223 TIARQANAAV-LVKLRIDMEDRGGRLELLIPYATLEPVRELLLQMFMGEKFGRDSI-WET 280

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
             A + +  +V++   ++    +L DV+  +IG  +           L      ++   +
Sbjct: 281 HLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLLNVAPDDTIELRCGDVPMFLGRM 340

Query: 290 GRVGKNYTIRI 300
           GR G N  +RI
Sbjct: 341 GRKGGNIAVRI 351


>gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score = 35.8 bits (81), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
           V S  + +       +  S ++  TL+E +LG   +   ++  R  + +E  L K+ + Q
Sbjct: 102 VLSIINFTPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLMRQ 159

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSF 197
           +  ++        E  P L      D ++ N+        N+ V  + +N+ I +V    
Sbjct: 160 VINLMVDPWENVIELQPKL------DKIETNSQFAQIVSPNDTVALVTLNLKIGDVEGMM 213

Query: 198 VLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
            + IP    E +L      L   N S+  +E       ++  +  VNI  ++     T+K
Sbjct: 214 NICIPHIVIEPILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVK 273

Query: 255 DVVTLKIGQVI 265
           D + L+IG VI
Sbjct: 274 DFLELQIGDVI 284


>gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
 gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
          Length = 327

 Score = 35.8 bits (81), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+I      S KF   +H+       +            I   + LV T+++ +LG +  
Sbjct: 75  VEIKKVGAASFKFDDFLHTMPSPVAMAVYKADPLKGAALIAFDSTLVFTIVDCILGGTGS 134

Query: 118 T-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
           + +P + NR  +++E +L ++ +  + A L + 
Sbjct: 135 SVVPTVGNRMFTSIELRLVQKIVMDVLADLEKA 167


>gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 337

 Score = 35.8 bits (81), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 25/285 (8%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E ++     L++  L  + +   DL    S       KF+  +HS       + 
Sbjct: 49  GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV T+++N  G       ++  R  +  E ++ +  + Q  A 
Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   +         D++Y+    N          E+V     ++ +E       +
Sbjct: 165 LKEAWAPVMD--------VDLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256
            +P   L     +  +      N  +D  +   R+  QL+   V + + +  K+ +L+ +
Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMSLRQL 274

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
             LK+G ++P     +    L      +++ E G    N  ++IT
Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVKIT 317


Searching..................................................done


Results from round 2




>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 318

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 318/318 (100%), Positives = 318/318 (100%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI
Sbjct: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP
Sbjct: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF
Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV
Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI
Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300

Query: 301 TDRINFDQKSLKNFLHKR 318
           TDRINFDQKSLKNFLHKR
Sbjct: 301 TDRINFDQKSLKNFLHKR 318


>gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
 gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
          Length = 316

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 103/316 (32%), Positives = 169/316 (53%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M       +   + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV +
Sbjct: 1   MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +Y  C+ G  +H++     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI 
Sbjct: 61  NYLGCEIGYKNHLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +  +R LS +E  LA     +I+ VL   ++      P+L   +  D   +      +EF
Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              INM++T+  + S F LI+PQ  LLKT +     + ++   S +  +    +  + +V
Sbjct: 181 AAAINMSLTLAGIVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ RI L+  TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+
Sbjct: 241 TLEARIRLQDLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRV 300

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + +++ ++
Sbjct: 301 KDTMNSDDELIRHLMN 316


>gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 316

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/316 (32%), Positives = 172/316 (54%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M   +   +   + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV +
Sbjct: 1   MTMSNASHDKPAMDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +Y  C+ G  +H+I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI 
Sbjct: 61  NYLGCEIGYKNHLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +  +R LS +E  LA     +I+ VL   ++      P+L   + +D   +      +EF
Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              INM++T+  + S F LI+PQ  LLKT +     + ++  +S +  +    +  + +V
Sbjct: 181 AAAINMSITLAGIVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ +I L+  TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+
Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + +++ ++
Sbjct: 301 KDTMNSDDELIRHLMN 316


>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 316

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 105/316 (33%), Positives = 171/316 (54%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M   +   +   + P LLA+LTG LGD+  + KI SS G +Y +F P + K +  LDV +
Sbjct: 1   MTMSNASHDKPAMDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +Y  C+ G  +H+I     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI 
Sbjct: 61  NYLGCEIGYKNHLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +  +R LS +E  LA     +I+ VL   ++      P+L   Y  D   +      +EF
Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              INM++T+  + S F LI+PQ  LLKT +     + ++ + S +  +    +  + +V
Sbjct: 181 AAAINMSITLAGIVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ +I L+  TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+
Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + +++ ++
Sbjct: 301 KDTMNSDDELIRHLMN 316


>gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42]
 gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42]
          Length = 316

 Score =  336 bits (861), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 168/316 (53%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M       +   + P LLA+LTG LGD+  + KI S+ G +Y +FLP I K +  LDV +
Sbjct: 1   MTMSDASHDKPAMDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SY  C+ G  +H++     N     A+L +WS N  + C N  VITL+E+LLGA+ +TI 
Sbjct: 61  SYLGCEIGYKNHLVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIE 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R LS +E  LA     +I+ VL   ++      P+L   +  D   +      +EF
Sbjct: 121 EPAERLLSVIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              INM++T+  + S F LIIPQ  LLKT +     + ++   S +  +    +  + +V
Sbjct: 181 AAAINMSITLAGIVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ +I L+  TL+ +  L  G VIPF         +SAN KE+Y CE GR G+NY +R+
Sbjct: 241 TLEAKIRLQDLTLRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRV 300

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + +++ ++
Sbjct: 301 KDTMNSDDELIRHLMN 316


>gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512]
          Length = 314

 Score =  335 bits (859), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 169/310 (54%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +   + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV ++Y  C+
Sbjct: 5   SHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCE 64

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
            G  +H++     N     A+L +WS N  + C N  VITL+E+LLGA+ ETI +  +R 
Sbjct: 65  IGYKNHLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRL 124

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
           LS +E  LA     +I+ VL   ++      P+L   +  D   +      +EF   INM
Sbjct: 125 LSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINM 184

Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           ++T+  + S F LI+PQ  LLKT + +   + ++   S +  +    +  + +V ++ RI
Sbjct: 185 SLTLAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARI 244

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L+  TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N 
Sbjct: 245 RLQDLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNS 304

Query: 307 DQKSLKNFLH 316
           D + +++ ++
Sbjct: 305 DDELIRHLMN 314


>gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
 gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
          Length = 314

 Score =  334 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M  QS H   + + P+L A+LTG LGD  T+ K+ ++ G +Y +FLP I K +  LDV +
Sbjct: 1   MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
            Y  C+SG  S ++     N      SL +WS NF +GC    V+TL+E+LLGA  ETI 
Sbjct: 60  GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
               R LS +E  L+     +I+ VL   ++ T    P L+  Y+I+         +++F
Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              I M +++    S  V+I+PQ  LL+T + +  ++N S +      +    +  +  V
Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSASTGA-WAEQLNEQVRRSQV 238

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ RI L+  TL  +  L +G VIPF+        +SAN K++Y CE GR G+NYT+R+
Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + L++ ++
Sbjct: 299 KDTVNSDDELLRHLMN 314


>gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 316

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 102/316 (32%), Positives = 170/316 (53%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M   +   +   + P LLA+LTG LGDK  + KI SS G +Y +F P + K +  L+V +
Sbjct: 1   MTMSNASHDKPAMDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +Y  C+ G  +H+I     N      +L +WS N  I C N  VITL+E+LLGA+ +TI 
Sbjct: 61  NYLGCEIGYKNHLIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIE 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +  +R LS +E  LA     +I+ VL   ++      P+L   + ++   +      +EF
Sbjct: 121 EPADRLLSIIEMDLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              INM++T+  + S F L++PQ  LLKT +     + ++   S +  +    +  + +V
Sbjct: 181 AAAINMSITLAGIVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            ++ +I L+  TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+
Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300

Query: 301 TDRINFDQKSLKNFLH 316
            D +N D + +++ ++
Sbjct: 301 KDTMNSDDELIRHLMN 316


>gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 318

 Score =  329 bits (844), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 208/317 (65%), Positives = 254/317 (80%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           MR +   K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++
Sbjct: 1   MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           SY + QSGKFSHI+HSFKE FVF + SL+  SSN FIGCSNNLVI LLE LL AS ET  
Sbjct: 61  SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           + +NRSLST+EKKLA   + +I+ VL+QCIST Q +   L++ Y++D+LK+NTN LSNEF
Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
           VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS    ED  D     TY+++V
Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            I++RINL+K TLKDV+ LKIGQV+PFL +EK  AIL+ANGKEIYSCELGR+GKNYT+RI
Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300

Query: 301 TDRINFDQKSLKNFLHK 317
            DRINFDQ+SL+NFLHK
Sbjct: 301 QDRINFDQESLRNFLHK 317


>gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4]
 gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4]
          Length = 319

 Score =  319 bits (818), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 169/305 (55%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P+   LLARLTG LGD K++EK+    G LY +FLP +F  + +L +++ Y   +SG   
Sbjct: 15  PMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLMR 74

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
            +I S  +NFV +  SL +WS NF + C N  VITL+E LLG   E I +   R LS +E
Sbjct: 75  DLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNIE 134

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             LA     +I+ VL   ++ T    P  E  ++ +   +       EF   ++M++ + 
Sbjct: 135 LDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKLG 194

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            + S F LIIPQ+TLLKT + +  S+N+     ++  +  A +  +  V ++ RI+L+  
Sbjct: 195 KITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQSL 254

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           +L  V  L  G VIPFL +      +SANG+++Y+CE GR G +YT+R+    + D + L
Sbjct: 255 SLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSELL 314

Query: 312 KNFLH 316
           ++ + 
Sbjct: 315 RHLMR 319


>gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti]
          Length = 315

 Score =  306 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 158/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   
Sbjct: 64  FRTGLRNDLIAALGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           medicae WSM419]
 gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           medicae WSM419]
          Length = 315

 Score =  305 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 157/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +   N       LLAR+ G LGD K I++++  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   NTASNIHAFDKRLLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + ++    +  +    SL +W ++F IGC + ++I L+E LLGA    I +   
Sbjct: 64  FRAGLRNELVAGLGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + +  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT  +S     K +N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTIARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti BL225C]
 gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti BL225C]
          Length = 315

 Score =  305 bits (780), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 158/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   
Sbjct: 64  FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti AK83]
 gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM
 gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
           meliloti AK83]
          Length = 315

 Score =  305 bits (780), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 158/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC + ++I L+E LLGA   +I +   
Sbjct: 64  FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A      I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     +SANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
 gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
          Length = 319

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + 
Sbjct: 14  IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 73

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +  +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E 
Sbjct: 74  LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 133

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  
Sbjct: 134 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 193

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  T
Sbjct: 194 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 253

Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313

Query: 311 LKNFL 315
           L++ +
Sbjct: 314 LRHLM 318


>gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
 gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
          Length = 315

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 157/312 (50%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       LLAR+TG LGD KTI + +  LG+++ + LP++ K++   D+ I Y  
Sbjct: 4   STDSNVYAFDKKLLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            + G  + +I    E  + S  SL +W + F IGC + ++I L+E LLGA    I +   
Sbjct: 64  VKMGFRNELIADLGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R+LS +E  +A     +I+  +   +       P +   ++          L + +  +I
Sbjct: 124 RALSKIEIDVAVPVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M   +  V S+F +IIPQ  LLKT ++   +  ++E+   D  +    +  +  V ++ 
Sbjct: 184 DMTFGLGPVLSTFSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEA 243

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI L+  TL  +  L+ G VIPF   +     ++ANG+++Y CE GR G  YT+R+ D  
Sbjct: 244 RIQLESLTLDTISRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTH 303

Query: 305 NFDQKSLKNFLH 316
             +Q  L++ + 
Sbjct: 304 GSEQDILRHIMS 315


>gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM
          Length = 321

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + 
Sbjct: 16  IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +  +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E 
Sbjct: 76  LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  
Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  T
Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255

Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315

Query: 311 LKNFL 315
           L++ +
Sbjct: 316 LRHLM 320


>gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens]
 gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens]
          Length = 321

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI KI + +G+LY +FLP  F  +  + +D+ Y   +SG  + 
Sbjct: 16  IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +  +N   +  SL +W  NF +   N  VI L+E +LGAS ++I     R+LS +E 
Sbjct: 76  LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I+ VL   ++        ++  ++ +        ++  +  TI M + I  
Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++++  +  ++  + E+ +D  +++  +  V ++ RI L+  T
Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255

Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315

Query: 311 LKNFL 315
           L++ +
Sbjct: 316 LRHLM 320


>gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
 gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3]
 gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
          Length = 319

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 2/305 (0%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   LLA+LTG L D+KTI K+ S +G+LY +FLP IF  +  + +D+ Y   +SG  + 
Sbjct: 14  IDTSLLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTD 73

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +   NF  +  SL +W  NF +   N  VI L+E +LGA+ +TI +   RSLS +E 
Sbjct: 74  LIANIGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIEL 133

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            LA   + +I  VL   ++        ++  +  +        ++  +  T+ M + I  
Sbjct: 134 DLAAMVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGK 193

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           V+S F LI+PQ  LLKT++ +  +  ++  +  + +D  + +  +  V ++ RI L+  T
Sbjct: 194 VSSEFALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLT 253

Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           L+ +  L  G VIPF    ++     +SANG ++Y+CE G+ G  Y +R+ + ++ D + 
Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313

Query: 311 LKNFL 315
           L++ +
Sbjct: 314 LRHLM 318


>gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum
           SL003B-26A1]
 gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum
           SL003B-26A1]
          Length = 314

 Score =  262 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 128/315 (40%), Gaps = 28/315 (8%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           I  +  P+ P+L  R+     D                       ++K      IS +  
Sbjct: 25  ISVDRLPMLPVLFDRMARVFADA---------------------MRQKSTSPSYISVSCI 63

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           ++ +   ++  ++ N + +      W +   +G   + + T+++ L GA     P    R
Sbjct: 64  ENERIGDVLDEYEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEER 123

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTI 184
           S S +E ++A+      +  L +  S   E++  +E     +D+      R +N  V   
Sbjct: 124 SFSNIETRIARSVFEVAAKALQESFSPIAETTLKIERVESRMDF--AVVGRRNNPAVVA- 180

Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            + +          +++P  TL  L+  L  + S   S  + +     F  +  +  V +
Sbjct: 181 RLLLQAIGRGGEIFVVMPHSTLNPLRQRLSQVLSGEMSG-RDKQWTQHFQTEIQRTEVRL 239

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
              +  ++ TL ++  L++GQ+I      ++   L  N + I++C LG++  +YT+++ D
Sbjct: 240 QAVLEERELTLGEIANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVED 299

Query: 303 RINFDQKSLKNFLHK 317
            I+ ++  + + L +
Sbjct: 300 LIHLEKDIVDDLLSR 314


>gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 315

 Score =  256 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 2/313 (0%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
             +    +T    P LL R+ G  GD   IE    SL       L + F+   ++ +   
Sbjct: 4   SAKDSKTDTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSAR 63

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               Q G    ++  F ++ VF    +  WS +    C   LVI ++E LLG S      
Sbjct: 64  PGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELD 123

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R LS +E  ++     Q++  L +  S    +         +D  +   +   +   
Sbjct: 124 IAARPLSGIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKPM-LDIPEAEDDPKPDFHA 182

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
             I + +   +V +   LI+PQ  LLKT  I+ S +N      +D  +    +  +  +N
Sbjct: 183 AAITLELQFGSVVTPLTLILPQSILLKTKPIT-SKKNAPNAVDDDWAERLNARVSRSQIN 241

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   + L    + ++  L++G +I F         LSANGK +Y+C LG+ G  Y +++ 
Sbjct: 242 LQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVE 301

Query: 302 DRINFDQKSLKNF 314
                D+    +F
Sbjct: 302 GDAGPDENWRSDF 314


>gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
 gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
           DFL-11]
          Length = 319

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 126/315 (40%), Gaps = 26/315 (8%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           I  +  P+ P++  R+                        +  + ++K      IS +  
Sbjct: 29  ISVDRLPMLPVVFDRMAR---------------------LMADVMRQKSPSPSYISVSYV 67

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           ++ +   ++  F+ N + +      W +   +G   + + TL++ L GA     P    R
Sbjct: 68  ENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDEER 127

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             S +E ++A+      +  L +  +   E++  +E       +       SN       
Sbjct: 128 PFSNIETRIARTIFEIAAKSLAESFAPIAETTLKIERIES--RMDFAVVGRSNNPAVVGR 185

Query: 186 MNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
           +            +++P  TL  L+  L  + S   S  + +     F  +  +  V ++
Sbjct: 186 LLQQAIGRGGEVFVVLPHATLNPLRQALSQVLSGEMSG-RDKQWTQHFHNEIQRTEVKLE 244

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +  ++  L ++  LK+GQVI      ++   L+ N + I++C+LG++  +YT++I + 
Sbjct: 245 AILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQLGQLDGSYTLQIEEL 304

Query: 304 INFDQKSLKNFLHKR 318
           I+ ++K L + L  R
Sbjct: 305 IHEEEKDLFDDLRNR 319


>gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
 gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
          Length = 319

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 131/316 (41%), Gaps = 28/316 (8%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
           I  +  P+ P++  R+                        +    ++K      IS +  
Sbjct: 29  ISVDRLPMLPVVFDRMAR---------------------LMADAMRQKSPSPSYISVSYV 67

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           ++ +   ++  F+ N + +      W +   +G   + + TL++ L GA     P    R
Sbjct: 68  ENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDDER 127

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTI 184
             S +E ++A+      +  L +  +   E++  +E     +D+      R +N  V   
Sbjct: 128 PFSNIETRIARTMFEVAAKALAESFAPIAETTLKIERIESRMDF--AVVGRRNNPAVVA- 184

Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            +            +++P  TL  L+  L  + S   S ++ +     F  +  +  V +
Sbjct: 185 RLLQQAIGRGGEVFIVMPHSTLNPLRQRLSQVLSGEMS-SRDKQWTQHFHNEIQRTEVKL 243

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           +  +  ++ +L D+  L++GQVI      ++   L+ N + +++C+LG++  +YT++I +
Sbjct: 244 EAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQLGQLNGSYTLQIDE 303

Query: 303 RINFDQKSLKNFLHKR 318
            I+ ++K L + L  R
Sbjct: 304 LIHEEEKDLFDDLRNR 319


>gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
          Length = 344

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL     D       S++                       S +  +SG
Sbjct: 59  DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 97

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   + ++  N V        W  +  +G   + + T++E L G+     P    R+ S
Sbjct: 98  RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 157

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++A+    Q+   L        +++  LE   +         R SN+ V      +
Sbjct: 158 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 215

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
              N      LIIPQ T+L     +L      E+ + D    +  A +  +  V +   +
Sbjct: 216 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 274

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             +  TL ++  LK+GQV+       T   L  N + ++ C  G+   +Y +R+ + IN 
Sbjct: 275 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334

Query: 307 DQKSLKNFL 315
           +++     L
Sbjct: 335 EKEGGHGLL 343


>gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
 gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
          Length = 335

 Score =  253 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 26/309 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL     D       SS+                       S +  +SG
Sbjct: 50  DRLPMLSVVFDRLATACSDAAKHFAASSTF---------------------YSLSGVESG 88

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   + ++  N V      + W  +  +G   + + T++E L G+     P    R+ S
Sbjct: 89  RFGEFLDAYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPPVEDERTFS 148

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++A+    Q+   L        +++  LE   +         R SN+ V      +
Sbjct: 149 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-TETRMEFAVIGRRSNKAVQA-KFLL 206

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
              N      LIIPQ T+L     +L+     E+ + D       A +  +  V +   +
Sbjct: 207 QALNRGGEMFLIIPQ-TVLNPLRPALAKVLTGESAARDPRWAQQIAAEVQKTTVRLRAVL 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             +  TL ++  LK+GQV+       T   L  N + ++ C  G+    Y +R+ D IN 
Sbjct: 266 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGAYVLRVEDAINP 325

Query: 307 DQKSLKNFL 315
           +++     L
Sbjct: 326 EKEGGHGLL 334


>gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
          Length = 344

 Score =  252 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL     D       S++                       S +  +SG
Sbjct: 59  DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 97

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   + ++  N V        W  +  +G   + + T++E L G+     P    R+ S
Sbjct: 98  RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 157

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++A+    Q+   L        +++  LE   +         R SN+ V      +
Sbjct: 158 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 215

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
              N      LIIPQ T+L     +L      E+ + D    +  A +  +  V +   +
Sbjct: 216 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 274

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             +  TL ++  LK+GQV+       T   L  N + ++ C  G+   +Y +R+ + IN 
Sbjct: 275 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334

Query: 307 DQKSLKNFL 315
           +++     L
Sbjct: 335 EKEGGHGLL 343


>gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
 gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
          Length = 340

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL     D       S++                       S +  +SG
Sbjct: 55  DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 93

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   + ++  N V        W  +  +G   + + T++E L G+     P    R+ S
Sbjct: 94  RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 153

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++A+    Q+   L        +++  LE   +         R SN+ V      +
Sbjct: 154 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 211

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
              N      LIIPQ T+L     +L      E+ + D    +  A +  +  V +   +
Sbjct: 212 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 270

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             +  TL ++  LK+GQV+       T   L  N + ++ C  G+   +Y +R+ + IN 
Sbjct: 271 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 330

Query: 307 DQKSLKNFL 315
           +++     L
Sbjct: 331 EKEGGHGLL 339


>gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
 gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
          Length = 303

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 28/314 (8%)

Query: 7   HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
             +  P+  ++  RL     D         +L +L                +  S  S +
Sbjct: 15  SPDRLPMLNVIFDRLATACAD---------NLKHLAV------------SPIFYSLMSVE 53

Query: 67  SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
           SG F  ++  ++ N V        W  +  +G   + V T++E LLGA     P    R+
Sbjct: 54  SGLFGDLLEPYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPPVEEARN 113

Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTIN 185
            S++E ++A+ T  QI   L    +    ++  LE     +D+      R SN+ V    
Sbjct: 114 FSSIELRIAQMTFEQIGKALEAAFALVSVATLKLERTETRMDF--AIIGRRSNKAVAA-K 170

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243
             +   N      LIIPQ  +L     SLS     E+ S D       + +  +  V + 
Sbjct: 171 FLLQALNRGGEMFLIIPQA-VLNPMRQSLSKVLTGESTSRDPRWEKQISTEVRKTEVTLR 229

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +  +  TL ++  LK+GQV+      ++   L  N + ++ C++G+    Y +R+ D+
Sbjct: 230 AVLEERTLTLGEIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQVGQANGAYVLRVEDQ 289

Query: 304 INFDQKSLKNFLHK 317
           I+ D++ +   L +
Sbjct: 290 IDQDKEFMDGVLAR 303


>gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099]
 gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti
           MAFF303099]
          Length = 315

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 128/312 (41%), Gaps = 9/312 (2%)

Query: 10  TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           TSP  P     +++ RL G  G+   +      +       L K    ++ + V +   +
Sbjct: 2   TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  + +       + F  +  + S+ S    +      +  ++  L G   ET      
Sbjct: 62  VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  ++     Q++  LN     + +    L     +   +   + L +     I
Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALNGSGRRSLD--LRLPVPRAMSGTEAKRHVLRDGAALRI 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            + ++    + +  + +PQ  +L +   + S+       S    + F+ +  +  V ++ 
Sbjct: 180 VLGISTPADSGTVTVTMPQRIVLASRDSAASTAGDDHGPS--WRERFSEEVMRSTVALEA 237

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            + L + TL D+ +L++GQVI F    ++ A LSA G+ ++ CE G++G+NYT+RI    
Sbjct: 238 TMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRIRHPF 297

Query: 305 NFDQKSLKNFLH 316
           +  Q  +   + 
Sbjct: 298 DAGQDFIDGLMP 309


>gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
 gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
          Length = 309

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 113/311 (36%), Gaps = 26/311 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL                          +  ++        S +S ++G
Sbjct: 23  DRMPMLHVIFDRL---------------------GTLCAEGLRQLAASQAFYSLSSIETG 61

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +   ++  ++   V     +  W S+  +G   + V T++E L GA     P    RS S
Sbjct: 62  RIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPPVDDERSFS 121

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++++    Q+   L+   +   ++    E       +        N    T    +
Sbjct: 122 NIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQET--RMDFAVIGRRNNLAVTAKFLL 179

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
              N      +IIPQ  L      +L+    +E    D         +  +  V +   +
Sbjct: 180 QALNRGGEMFVIIPQSALTPM-RQALARTTPAETSGRDPIWTKQIRDEVNRTQVKVRAIL 238

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             +   L ++   K+GQV+      +T   L +  + ++ C LG+    Y +R+ ++IN 
Sbjct: 239 EERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQAEGAYVLRVEEQINL 298

Query: 307 DQKSLKNFLHK 317
           +Q+ + + L +
Sbjct: 299 NQEFVDDILPR 309


>gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
 gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
          Length = 311

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 113/309 (36%), Gaps = 28/309 (9%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P+  ++  ++T                         +  +         S +   S + S
Sbjct: 28  PMLHVIFDQMT---------------------NLCAEALRSMSPSQSYFSLSGVGSDRLS 66

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
            I+  ++   + +     +W +   IG   + + T++E L GA     P    R  S VE
Sbjct: 67  DIVDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVE 126

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTINMNMTI 190
             +A+    +    L    S   + +  LE     +DYL     RL+N  V   N+ +  
Sbjct: 127 MHVAQALFERFGKALQSSFSRASDVNFTLERVETRMDYLA--VGRLNNMAVCA-NILLQG 183

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINL 248
            +      ++IP    L     +LS     E+ S D         +  +  V +   +  
Sbjct: 184 LDRGGEMFIVIPHAA-LNPIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEE 242

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +  TL +V    +GQVI       T   L  N + ++ C+LG++   Y++++ +  +  +
Sbjct: 243 RPFTLGEVAGFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKR 302

Query: 309 KSLKNFLHK 317
           + +   L +
Sbjct: 303 EFIDGILSR 311


>gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
 gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
          Length = 275

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 105/279 (37%), Gaps = 7/279 (2%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
                 +  +         S +   S + S I+  ++   + +     +W +   IG   
Sbjct: 1   MTNLCAESLRSMSPSQSYFSLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDR 60

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           + + T++E L GA     P    R  S VE  +A+    +    L    S   + +  L+
Sbjct: 61  DFIYTMIELLFGADGAEPPLDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLD 120

Query: 162 DFYD-IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                +DYL     R +N  V+   +   + +      ++IP    L     +LS     
Sbjct: 121 RVETRMDYLA--IGRPNNMAVSAQILLQGL-DRGGEMFIVIPHAA-LNPIRTALSQIVTG 176

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E+ S D         +  +  V +   +  +  TL +V    +GQVI       T   L 
Sbjct: 177 ESASTDPNWSRQLHSEIQRTEVVLRAVLEERPFTLGEVAKFHVGQVIKLNATPNTMVRLE 236

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
            N + ++ C++G++   Y++++ +  +  ++ +   L +
Sbjct: 237 CNNQRLFWCQMGQLNGAYSLQVKESADQKREFIDGILSR 275


>gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 315

 Score =  239 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 116/301 (38%), Gaps = 4/301 (1%)

Query: 16  ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
           +++ RL G  G+   +     ++       L K    +  + V +   + +  +      
Sbjct: 13  LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72

Query: 76  SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
              + F  +    S+ S    +      +  ++  L G   +       R LS +E  ++
Sbjct: 73  RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
                Q++  LN     + +    L     +   +     L +     I + ++    + 
Sbjct: 133 TMVFQQVAQALNGSGKRSLD--LRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
           +  + +PQ  +L +   ++   +     S      F+ +  +  V ++  + L + TL D
Sbjct: 191 TVTVTMPQRVVLASRDGAVPVSDDDHGPS--WRARFSEEVMRSTVALEATMPLARLTLGD 248

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +   +IG VI F    ++ A LSA GK ++ CE G++G+NYT+RI    +  Q  +   +
Sbjct: 249 LAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDFIDGLM 308

Query: 316 H 316
            
Sbjct: 309 P 309


>gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
          Length = 309

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 113/279 (40%), Gaps = 5/279 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
               F     +      V  S ++ +S +F  I+  ++ N +        W S+  +G  
Sbjct: 34  RVATFCADQLRHFAASPVYFSLSNVESQRFGDILEPYESNAIAGIFQAPEWDSHILVGFD 93

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            + + T++E LLG+     P    RS S +E ++A+R   Q+   +    +   ++   L
Sbjct: 94  RDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVADTPFKL 153

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           E   ++        R +N+ V      +   N      ++IPQ  +L     SL+     
Sbjct: 154 ER-TELRMDFAVIGRRNNQAVAA-KFLLQALNRGGEMFIVIPQS-VLNPMRQSLARILVG 210

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E  + D       A +  +  V +   +  K   L ++  L +GQV+      ++   L 
Sbjct: 211 ETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRVKLV 270

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
            N ++++ C++G+      +R+   I+ DQ+ + + L +
Sbjct: 271 GNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309


>gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 315

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 122/312 (39%), Gaps = 9/312 (2%)

Query: 10  TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           TSP  P     +++ RL G  G+   +     ++       L K     + + V +   +
Sbjct: 2   TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  + +       +NF  +     + S    +      +  ++  L G   +       
Sbjct: 62  VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R LS +E  ++     +++  LN     +      L     +  ++   + L +     I
Sbjct: 122 RDLSPLEADVSTMVFQEVAQALNGSGQRS--LELRLPAPRAMSGIEARRHVLRDGAAIRI 179

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            + ++    + S  +++PQ  +L       S+       S      F+ +  +  V ++ 
Sbjct: 180 VLGISTPVDSGSITVMMPQRIVLAGRDGIASASEADPGTS--WRARFSEEVMRSTVALEA 237

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            + L + TL D+  L++GQVI F    ++ A L A G+ ++ CE G++G+NYT+RI    
Sbjct: 238 TMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYTVRIRHPF 297

Query: 305 NFDQKSLKNFLH 316
           +  Q  +   + 
Sbjct: 298 DAGQDFIDGLMP 309


>gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110]
 gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110]
          Length = 313

 Score =  235 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 5/279 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
                     +         S     + +   II  ++ N V +      W S   I   
Sbjct: 38  RMAASCTDSLQPMAGTPCYFSVNGITNDRVGDIIKDYEANAVAAVLYAEQWDSRIIIMLD 97

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            + V T++E + G+     P    RS S +E +L +    + +  L    + T   +  +
Sbjct: 98  RDFVFTMVEAMFGSDGAEPPLDVERSFSNIEIRLVQALFERFAKALQSAFAGTSNVTFRV 157

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           E             R  N  +    M +          LIIP    L      L+    S
Sbjct: 158 ERVET-AMASLAIGRSGNMSICANIM-LQALYRGGQMFLIIPHSA-LNPLRQKLAHVVVS 214

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           + ++ D    +    + ++  V +   ++ K  TL DVV  ++GQV+      +T A L 
Sbjct: 215 DGRASDPRWREQMESEVHRTEVTLSAVLDEKMVTLGDVVKFQVGQVLELEATPRTLARLE 274

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           +N + ++ C++G++   Y +++ D ++  ++ + + L +
Sbjct: 275 SNNQVLFWCQIGQLDGYYAMQVADPVDQKREFVDDILSR 313


>gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 313

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 111/307 (36%), Gaps = 24/307 (7%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  R+  +  +                       ++        + +S  + 
Sbjct: 27  DRMPMLHVIFDRMVAQCSE---------------------SLRQYSAAPAVFTVSSIGTE 65

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +   I+ +++ N V +   + +W S   +G     + TL+E   G      P +  R LS
Sbjct: 66  RIGDILDAYENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLS 125

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E KLA+     +   L    ST  E+    E       L        N F     +N+
Sbjct: 126 NIEIKLAQTIFDLLPKALQTSFSTISETVFKFERLET--KLDFAVIAPRNTFGFITRINL 183

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I        ++IPQ +L            N +  +          +  +  V +   I 
Sbjct: 184 RILGRHGEMFVVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIE 243

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                L D   LKIGQV+P     K+ A L  N + ++ C++G+    YT+R+ D I+ +
Sbjct: 244 DSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQE 303

Query: 308 QKSLKNF 314
           +  ++  
Sbjct: 304 KDFIEGI 310


>gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti]
          Length = 258

 Score =  229 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/254 (27%), Positives = 125/254 (49%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   N       L+AR+TG LGD K I + +  L  ++ + LP + + +   DV I+Y  
Sbjct: 4   STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            ++G  + +I +  +  +    SL +W ++F +GC   ++I L+E LLG +  +I +   
Sbjct: 64  FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPP 123

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           RSLS +E  +A    ++I+ VL   ++      P +   Y+     K    L + F  +I
Sbjct: 124 RSLSKIEIDVALPVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +M + +  V S+F +I+PQ TLLKT ++S     +  N   +  +    +  +  V ++ 
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243

Query: 245 RINLKKTTLKDVVT 258
           RI L+  TL  +  
Sbjct: 244 RIRLESLTLDTLSR 257


>gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
 gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
          Length = 321

 Score =  226 bits (575), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 127/311 (40%), Gaps = 26/311 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  R+  +  D  T+ +++++  YL                      S  + 
Sbjct: 35  DRLPMLHVVFDRMARQYID--TLRQMAATAPYLA-------------------VQSVSNE 73

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +    +  +++  V +      W +   +G     + +++E LLG   E  P L +RSL+
Sbjct: 74  RIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLT 133

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            VE++LA R   + +  L        ++S  +E   +       T R SN  V    M  
Sbjct: 134 NVEQRLAYRMFEEAATALETAFEAIADTSLKVERLEN-RMEFAQTGRKSNPCVLA-KMTA 191

Query: 189 TIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
            I        +IIPQ  L  L+  L  + S      +       F ++  +  V +   +
Sbjct: 192 EIIGREGEIFIIIPQSVLNPLRENLTQVLSGE-VAGRDTRWTKQFQQEVQRTEVKLTAIL 250

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             ++ TL++V   ++G V+      KT   L  N + +++C LG+V  +YT+R+ + I  
Sbjct: 251 EEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQ 310

Query: 307 DQKSLKNFLHK 317
           + + L + L  
Sbjct: 311 EGELLDDILSN 321


>gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
           700345]
 gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
           700345]
          Length = 342

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   E    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQ-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   ++V ID  I   K TL++V+  K G VIP    E
Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               IL       Y C++G+   N  ++I ++I   +      
Sbjct: 287 H--IILKVEDLPTYRCKMGKAKDNLALKICEKIPRPETVKTEL 327


>gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
 gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
          Length = 343

 Score =  224 bits (572), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 57  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTGLITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 175 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 227

Query: 214 LSSQNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D+    A   +   ++V ID  I  ++ TLKDV+  K G +IP    E
Sbjct: 228 LDAGVQSDTQDTDMRWSLALKDEIMDIDVGIDATIVEQQITLKDVMEFKAGDIIPVELPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +L       Y C+LG+   N  +RIT++I   +      
Sbjct: 288 H--IVLRVEDLPTYRCKLGKTRDNLALRITEKIPRPETVKSEL 328


>gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
 gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
          Length = 342

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   ++V ID  +   + TL+DV+  K G VIP    E
Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATVVEHQVTLRDVLEFKAGDVIPVELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               IL       Y C++G+  +N  ++I ++I   +      
Sbjct: 287 H--IILKVEDLPTYRCKMGKTKENLALKICEQIQRPETVKSEL 327


>gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
 gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
          Length = 342

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    +       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFNPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVISSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   +NV +D  +   + TLKDV+ LK G +IP    E
Sbjct: 227 LDAGVQSDTQDTDMRWSQALKDEIMDVNVGLDATVVEHQITLKDVMELKQGDIIPVELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               IL       + C+LG+   N  +R+  +I   + +    
Sbjct: 287 H--IILRVEDLPTFRCKLGKARDNLALRVIQKIPRPETAKSEL 327


>gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
 gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
 gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678]
          Length = 342

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  I   + TLKDV+  K G +IP    E
Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIHEKIPRPETVKSEL 327


>gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis
           HAW-EB4]
 gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis
           HAW-EB4]
          Length = 342

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVQ-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   ++V ID  I   K TLK V+  K G VIP    E
Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               IL       Y C++GR  +N  ++I ++I   +      
Sbjct: 287 --YIILKVEDLPTYRCKMGRTKENLALKICEQIPRPETVKTEL 327


>gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
 gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
          Length = 342

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  I   + TLKDV+  K G +IP    E
Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIHEKIPRPETVKSEL 327


>gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
 gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
 gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
 gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
 gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
 gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
 gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
 gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
          Length = 342

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  I   + TLKDV+  K G +IP    E
Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 327


>gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
           400]
 gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
           400]
          Length = 342

 Score =  222 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FEYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  +   + TL+DV+  K G +IP    E
Sbjct: 227 LDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDVNVVEHEVTLRDVMGFKAGDIIPIDLPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++   G   Y C++G+   N  ++I+++I   +      
Sbjct: 287 H--IMMRIEGLPTYRCKMGKSRDNLALKISEKIPRPETVKTEM 327


>gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
 gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
          Length = 341

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 55  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 114

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   +    
Sbjct: 115 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 172

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 173 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 225

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V +D  I  K+ +LKDV+  K G +IP    E
Sbjct: 226 LDAGVQSDTQDTDMRWSQALKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPE 285

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +L       Y C+LGR  +N  + I ++I   +      
Sbjct: 286 --YIVLRVEDLPTYRCKLGRSRENLALNIREKIPRPETVKTEL 326


>gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
 gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
 gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
 gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
 gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200]
          Length = 343

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 57  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  +   + TLKDV+  K G +IP    E
Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDACVVEHELTLKDVMNFKAGDIIPVELPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKTEL 328


>gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
 gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
          Length = 343

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  +   + TLKDV+  K G +IP    E
Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 288 --YIMMRIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328


>gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
 gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
 gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
 gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
          Length = 343

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  +   + TLKDV+  K G +IP    E
Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328


>gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
 gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
          Length = 357

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 100/283 (35%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M  + ++S    Q  KF   +H+       +            I  
Sbjct: 56  ERFARHLRISLFNMMRRNAEVSINGVQMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  +     +  +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFQAKIEGREFTPTERRIIQLLLKTVFEDYKESWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDGGGGDFHITLPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V++ T +  ++ TL+D++ +K G +IP    E
Sbjct: 227 LDAGVQSDKQDTDMRWAKALQDEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       +  +LGR G N  +RI +RI   +      
Sbjct: 287 H--LLVRIEDLPTFRGKLGRKGDNVAVRIEERIPRPKSYKNEL 327


>gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
 gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
          Length = 341

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 55  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 114

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 115 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 172

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 173 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 225

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   ++V ID  I   + TLKDV+  K G VI     E
Sbjct: 226 LDAGVQSDTQDTDMRWSQALKDEIMDVDVGIDATIVEHQVTLKDVMEFKQGDVITVELPE 285

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C+LG    N  +RI + I   + +    
Sbjct: 286 H--IVMRVEDLPTYRCKLGTARDNLALRICETIPRPETAKNEL 326


>gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
 gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
          Length = 343

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  D  +   + TLKDV+  K G +IP    E
Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C++GR   N  ++I ++I   +      
Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328


>gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99]
 gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99]
          Length = 348

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 97/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 62  ERFARHLRISMFNMMRRAAEVSINGVQMIKFGEYVHTLFVPTSLNMVKFSPLKGTGLITM 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   +    
Sbjct: 122 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 179

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 180 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 232

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V ID  I  ++  LKDV+  + G +IP    E
Sbjct: 233 LDAGVQSDTQDTDKRWSMALKDEIMDIKVGIDATIVDQEIALKDVMKFRAGDIIPVDLPE 292

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +L       Y C+LG+   N  +RI ++I   +      
Sbjct: 293 H--IVLRVEDLPTYRCKLGKSRDNLALRIIEKIPRPKTVKTEL 333


>gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella
           silvestris BL2]
 gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella
           silvestris BL2]
          Length = 314

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 112/311 (36%), Gaps = 26/311 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++L R+         I + S +L  L                   S  +  + 
Sbjct: 28  DRMPMLHVILDRM---------IAQCSENLRQLSAP------------PAFFSVDTVAAR 66

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +   ++ +++           +W S   IG  ++ + TL E L G      P    R LS
Sbjct: 67  RVGDVLDAYENKVAIGVYHALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLS 126

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
           ++E +LA + +      L    ST  +++  LE       L        N F  T  + +
Sbjct: 127 SLELRLAHKALDLFGRALQSAFSTVSDTAFKLERVET--RLDFAVIAPRNAFGVTAKIKL 184

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I        ++IPQ   L +    L      +    D         +  +  + +   I
Sbjct: 185 RILGRHGEMFILIPQAA-LNSVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVI 243

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             +   L D+  LK+G ++       T   L  N + ++ C LG+    YT+RI + ++ 
Sbjct: 244 EERHFLLGDIADLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSR 303

Query: 307 DQKSLKNFLHK 317
           +Q+ +   L +
Sbjct: 304 EQEFVDEMLSR 314


>gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56]
          Length = 209

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 113/209 (54%)

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
           +E+LLGA+ +TI +  +R LS +E  LA     +I+ VL   ++      P+L   +  D
Sbjct: 1   MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
              +      +EF   INM++T+  + S F LI+PQ  LLKT +     + ++   S + 
Sbjct: 61  TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +    +  + +V ++ RI L+  TL+ +  L +G VIPF    +    +SAN KE+Y C
Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180

Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           E GR G+NY +R+ D +N D + +++ ++
Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLMN 209


>gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
 gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
          Length = 400

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V S      W +       
Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG     T  ++  R  +T+E  L KR I  + A   Q           
Sbjct: 174 STLIYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVRFT 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +       FA +  +  V +D  +      LK ++ LK+G  +P   R      +
Sbjct: 292 EKFG-RDPVWEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR+T  +     +L  F
Sbjct: 351 RCGNTMLTEGRMGRVGDRVAIRVTKNLRKPHTTLAMF 387


>gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
 gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
          Length = 364

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 20/285 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 60  ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 177

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 178 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + TR+   K +L+ ++ L+ G VIP    E
Sbjct: 231 LDAGVQSDTEDTDLRWSKALRDEIMDVEVGLSTRMLEVKLSLEQIMNLQAGDVIPVEMPE 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +       +  ++GR   N  ++I+++I     S+K+ +H
Sbjct: 291 H--ITVFIEDLPTFRAKMGRSRDNVALQISEKI-KRPDSVKSEMH 332


>gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
 gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
          Length = 342

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +            I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I        +   +    
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  DYL    N          E V   + ++ ++     F + +P   +++     
Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVNSFHIEVDGGGGDFHITMPYS-MIEPIREL 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ Q  D         +   + V  +  +   + +L+DV+ ++ G VIP    E
Sbjct: 227 LDAGVQSDKQDTDMRWSQALKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               ++       Y C+LG+  +   ++I ++I   +      
Sbjct: 287 --YVLMKIEELPTYRCKLGKSREQLALKICEKIPRPETVKTEL 327


>gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
 gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
          Length = 400

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V S      W +       
Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG     T  ++  R  +T+E  L KR I  + +   Q           
Sbjct: 174 STLIYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLSDAEQAFRPLSPVRFT 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +       FA +  Q  V +D  +      LK ++ LK+G  +P   R      +
Sbjct: 292 EKFG-RDPVWEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR+T  +     +L  F
Sbjct: 351 RCGSTMLTEGRMGRVGDRVAIRVTKNLRKPNTTLAMF 387


>gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA
           110]
 gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
          Length = 400

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 108/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V++S     S +F   ++S     V S      W +       
Sbjct: 114 RLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWDNFGMATVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG     +  ++  R  +T+E +L KR +  + A   Q        +  
Sbjct: 174 SNLIYSMIDVLLGGRRGTSQLRIEGRPYTTIETELVKRLVEVVLADAEQAFRPLSPVTFT 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLRIDMEDRGGNIELLLPYATIEPIRGVLLQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +       FA +  Q  +++D  +      LK ++ LK+G  +P   R      +
Sbjct: 292 EKFG-RDPVWEGHFATEIGQAEISVDAVLYEADIPLKQLMRLKVGDTLPLDMRADANVTV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 I    +GRVG    IR+T  +     +L  F
Sbjct: 351 RCGDVTITEGRMGRVGDRVAIRVTKPLRKPSTTLAMF 387


>gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
           BNC1]
 gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
           BNC1]
          Length = 311

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 108/315 (34%), Gaps = 10/315 (3%)

Query: 4   QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
           ++   +  P+  +++ RL G  GD + + + + +        L  IF+ K    + +   
Sbjct: 2   KAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIA 61

Query: 64  SCQSGKFSHI---IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
             +  + + +     SF    V          +          +  L+  LLG   +  P
Sbjct: 62  GVEVVRLAELKPEPDSFDALVVIPATDSRDALTMRL---DAQALSLLVSILLGGDPDIPP 118

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
              +R  S +E  +A+      +  LN   S +                      + +  
Sbjct: 119 SPLDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPG-DFKRFLVRDGP 177

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
              I  ++    V+      +P   +LK    +    + +  Q       F  +  +  V
Sbjct: 178 GIRIAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQ---WKQRFGEEVRRSTV 234

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   I L K  L  +  LK GQV+           LS   + ++ CE GR+G+NYT+RI
Sbjct: 235 QVTATIPLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI 294

Query: 301 TDRINFDQKSLKNFL 315
               +  Q  L   L
Sbjct: 295 RQPFDDRQAVLDGLL 309


>gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
 gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisA53]
          Length = 403

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 109/277 (39%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +FS  ++S     V S      W +       
Sbjct: 117 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMNSIPLPAVLSVFKAEEWENFGLATVD 176

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +T  ++  R  +T+E  L KR +  + A   Q        +  
Sbjct: 177 SSLIYSMIDVLLGGRRGQTSMRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFK 236

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +       R +N     + +++ +E+   +  L++P  T+  ++  L+ +   
Sbjct: 237 IDRLET-NPRFAAITRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMG 294

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +  Q  +++D  +   +  LK +++LK+G  +P   R      +
Sbjct: 295 EKFG-RDPIWEGHLATEITQAQISVDAVLYEAELPLKQLMSLKVGDTLPLEMRPDALVSV 353

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRV     IR+T ++     +   F
Sbjct: 354 RCGSVILTEGRMGRVADRVAIRVTKQLRKPNTTYAMF 390


>gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 363

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 96/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 59  ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V++ T++     TLK ++ LK G +IP    E
Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQLLEVDLTLKQIMELKAGDIIPVEMPE 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +       +  ++GR   N  ++I+++I          
Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDNVALQISEKIKRPDSVKSEL 330


>gi|315127312|ref|YP_004069315.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
 gi|315015826|gb|ADT69164.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
          Length = 363

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 59  ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V++ T++     +LK ++ LK G +IP    E
Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVDLSTQLLEVDLSLKQIMELKAGDIIPVEMPE 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +       +  ++GR   N  ++I+++I          
Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDNVALQISEKIKRPDSVKSEL 330


>gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
 gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
          Length = 399

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 108/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F+  ++S     V +      W +       
Sbjct: 113 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVD 172

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +T  ++  R  +T+E  L KR +  + A   Q        +  
Sbjct: 173 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFT 232

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 233 IDRLET-NPRFAAISRPAN-AAILVRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMG 290

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +  +  + +D  +      LK +++LK+G  +P   R      +
Sbjct: 291 EKFG-RDPIWEGHLATEIAKAEMYVDAVLYEADMPLKQLMSLKVGDTLPLDIRPDAMVSV 349

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR++  ++    +   F
Sbjct: 350 RCGDVTLSEGRMGRVGDRVAIRVSKPLHKPHTTYAMF 386


>gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 363

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 59  ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T++     TLK ++ LK G +IP    E
Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVELSTQLLEVDLTLKQIMELKAGDIIPVEMPE 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +       +  ++GR   +  ++I+++I          
Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDSVALQISEKIKRPDSVKSEL 330


>gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           CGA009]
 gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           TIE-1]
 gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas
           palustris CGA009]
 gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           TIE-1]
          Length = 400

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V        W +       
Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +   ++  R  +T+E  L KR +  + A   Q        S +
Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFS 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + +++ +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   + +      A +  Q ++++D  +   +  L+ ++ L++G  +P   R      +
Sbjct: 292 EKFG-RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR+T  +     +   F
Sbjct: 351 RCGSVVLTEGRMGRVGDRVAIRVTKPLRKPLTTYAMF 387


>gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi
           Nb-255]
 gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi
           Nb-255]
          Length = 401

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V S      W +       
Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVD 174

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    ++  ++  R  +T+E  L KR +  + A   Q        S +
Sbjct: 175 SSLIYSMIDVLLGGRRGQSSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVSFS 234

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +       R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 235 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 292

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +  Q  + +D  +   +  L+ ++TLK+G  +P   R      +
Sbjct: 293 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLRQLMTLKVGDTLPLEMRPDASVAV 351

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR++  +     +   F
Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVSRHLRKPSTTFAMF 388


>gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
           OM5]
 gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
           OM5]
          Length = 398

 Score =  209 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 111/277 (40%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F+  ++S     V +      W +       
Sbjct: 112 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVD 171

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +T  ++  R  +T+E  L KR +  + A   Q        +  
Sbjct: 172 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFT 231

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 232 IDRLET-NPRFAAISRPAN-AAILVRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMG 289

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +  Q  + +D  +   +  LK +++L++G  +P   R      +
Sbjct: 290 EKFG-RDPIWEGHLATEIAQAELYVDAVLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSV 348

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                ++    +GRVG    IR++  ++  + +   F
Sbjct: 349 RCGDVKLSEGRMGRVGDRVAIRVSKPLHKPRTTYAMF 385


>gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           HaA2]
 gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           HaA2]
          Length = 401

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 110/277 (39%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +FS  ++S     V        W +       
Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMNSIPLPAVLCVFKAEEWQNFGLATVD 174

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +   ++  R  +T+E  L KR +  + A   Q        + +
Sbjct: 175 SSLIYSMIDVLLGGRRGQAAIRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVAFS 234

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + +++ +E+   +  L++P  T+  ++  L+ +   
Sbjct: 235 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 292

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   + +      A +  Q ++++D  +   +  L+ ++ L++G  +P   R      +
Sbjct: 293 EKFG-RDQVWEGHLATEIGQADISVDAVLYEAEVPLRQLMALQVGDTLPLDLRADALVAV 351

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR+T  +     +   F
Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVTKPLRKPVTTYAMF 388


>gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
 gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
          Length = 401

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 106/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V S      W +       
Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVD 174

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +T  ++  R  +T+E  L KR +  + A   Q        + +
Sbjct: 175 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFS 234

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +       R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 235 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 292

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +  Q  + +D  +   +  LK ++ LK+G  +P   R      +
Sbjct: 293 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMALKVGDTLPLDMRPDASVAV 351

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR++  +     +   F
Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVSRHLRKPNTTFAMF 388


>gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           DX-1]
 gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           DX-1]
          Length = 400

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V        W +       
Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +   ++  R  +T+E  L KR +  + A   Q        S +
Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFS 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + +++ +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   + +      A +  Q ++++D  +   +  L+ ++ L++G  +P   R      +
Sbjct: 292 EKFG-RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR+T  +     +   F
Sbjct: 351 RCGSVVLTEGRMGRVGDRVAIRVTKPLRRPLTTYAMF 387


>gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB5]
 gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB5]
          Length = 400

 Score =  208 bits (530), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 108/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V        W +       
Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +   ++  R  +T+E  L KR +  + A   Q        + +
Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVAFS 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +      +R +N     + +++ +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   + +      A +  Q  +++D  +   +  LK ++ L++G  +P   R      +
Sbjct: 292 EKFG-RDQVWEGHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPLDLRADALVAV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR+T  +     +   F
Sbjct: 351 RCGSVTLTEGRMGRVGDRVAIRVTKPLRRPVTTYAMF 387


>gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
 gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
           BisB18]
          Length = 404

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 105/277 (37%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +FS  + S     V S      W +       
Sbjct: 118 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMSSIPLPAVLSVFKAEEWENFGLATVD 177

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG    +   ++  R  +T+E  L KR +  + A   Q        +  
Sbjct: 178 SALIYSMIDVLLGGRRGQASMRVEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFK 237

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +       R +N     + +++ +E+   +  L++P  T+  ++  L+ +   
Sbjct: 238 IDRLET-NPRFAAITRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMG 295

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        + +  Q  +++D  +   +  LK ++ LK+G  +P   R      +
Sbjct: 296 EKFG-RDPIWEGHLSTEIAQAEISVDAVLYEAEIPLKQLMRLKVGDTLPLELRADALVAV 354

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRV     IR+T ++     +   F
Sbjct: 355 RCGNVTLTEGRMGRVADRVAIRVTKQLRKPNTTYAMF 391


>gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
 gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
          Length = 352

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF   +H+       +            +  
Sbjct: 63  ERFARHLRISLFNMLRHTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTM 122

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  I        +    +   
Sbjct: 123 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKDAWAPVMTA--- 179

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 180 -----DFEYLDSEVNPAMANIVSPTEVIVVNSFHIELDGGGGDFHIAMPYS-MLEPIREL 233

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   ++V +  ++  K+  L+D++   +G +IP    E
Sbjct: 234 LDAGVQSDKEDTDQRWSQALEDEIMDVDVYLTAKLLEKQLPLRDMINWSVGDIIPVELPE 293

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +    +   G   +  +LG+   N  ++I DRI   +
Sbjct: 294 ELLVCV--EGLPSFHAKLGKSNDNLALKIIDRIKRPE 328


>gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 356

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +        +   +    
Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + V +  ++     TL++++ LK G +IP    E
Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETDLTLRELMELKPGDIIPVEMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +       +  ++GR   N  ++ITD++    + +K  +H
Sbjct: 288 NLLVYV--EDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329


>gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 400

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 106/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     V S      W +       
Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVD 173

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    +T  ++  R  +T+E  L KR +  + A   Q        S +
Sbjct: 174 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVSFS 233

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++     +       R +N     + + + +E+   +  L++P  T+  ++  L+ +   
Sbjct: 234 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 291

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +  Q  + +D  +   +  LK ++TLK+G  +    R      +
Sbjct: 292 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMTLKVGDTLALEMRPDASVAV 350

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    +GRVG    IR++  +     +   F
Sbjct: 351 RCGSVTLTEGRMGRVGDRVAIRVSRNLRKPNTTFAMF 387


>gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145]
 gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145]
          Length = 354

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 98/283 (34%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 58  ERFARHMRVSLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   +    
Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDV--- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 175 -----GFEYLDSEVNPAMANIVSPTEVIVISSFHIELDGGGGDFHIALPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D+    A +   ++V ++    L     TL++V+  + G +IP    +
Sbjct: 229 LDAGVQSDKEDTDMRWSKALRDEIMDVPVEMVAKLADVDVTLREVMDFEEGDIIPLEVPD 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +       +  ++GR   N  ++I+D+I   +    + 
Sbjct: 289 N--LTVFIEDLPTFHAKMGRSRDNIALKISDKIRRPETVKSDI 329


>gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila]
          Length = 356

 Score =  205 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +        +   +    
Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + V +  ++   + TL++++ L+ G +IP    E
Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               ++       +  ++GR   N  ++ITD++    + +K  +H
Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329


>gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 356

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +        +   +    
Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + V +  ++   + TL++++ L+ G +IP    E
Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               ++       +  ++GR   N  ++ITD++    + +K  +H
Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329


>gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565]
 gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565]
          Length = 356

 Score =  205 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +        +   +    
Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + V +  ++   + TL++++ L+ G +IP    E
Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELRPGDIIPVDMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               ++       +  ++GR   N  ++ITD++    + +K  +H
Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329


>gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
 gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
          Length = 348

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 52  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 108

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 109 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 168

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 169 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 226

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 227 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 286

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 287 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 346

Query: 316 H 316
            
Sbjct: 347 A 347


>gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36]
 gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36]
          Length = 350

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 103/289 (35%), Gaps = 22/289 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            +  
Sbjct: 58  ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +    ++  +   ++   
Sbjct: 118 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKIVFEDYHEAWAPVMDAE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDGGGGDFHITMPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T++   + T+  ++ L++G +IP    E
Sbjct: 229 LDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQKSLKNFLHK 317
           +    +       Y  +LGR   N  ++I+ ++   N  +  + + + +
Sbjct: 289 E--LTVFIEDLPSYKAKLGRNKDNVAVKISRKLKVSNLTKSDIDHVVLR 335


>gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 347

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            +  
Sbjct: 57  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              L+  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 117 EARLIFILVENFFGGDGRFHAKIEGREFTPTERRIIQMLLKLVFEDYREAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VNI  ++     TL+D++ L++G +IP     
Sbjct: 228 LDAGVQSDKMDTDVRWSRALREEIMDIPVNIRAKLLDVDLTLRDLMELQVGDIIPVDMP- 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G N  ++I++++    
Sbjct: 287 -DTATVFVEDLPTYRAKMGRSGDNVALKISEKLKRPD 322


>gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14]
 gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14]
          Length = 349

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 57  ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN+  ++     +L+D++ L++G VIP    E
Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G N  ++I++++    
Sbjct: 288 --QATIFVEDLPTYHAKMGRSGDNVALKISEKLQRPD 322


>gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR]
 gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR]
          Length = 356

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 100/283 (35%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 60  ERFARHMRVSLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  +     +  +   +    
Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWAPVMDV--- 176

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 177 -----GFEYLDSEVNPAMANIVSPTEVIVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR--INLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D+    A +   ++V ++    +   + +L++V+ L+ G VIP    +
Sbjct: 231 LDAGVQSDKEDTDMRWSKALRDEIMDVPVEMIAKLAQTEMSLREVMDLREGDVIPLELPD 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +       +  ++GR   N  ++I+++I   +    + 
Sbjct: 291 D--LTVLIEDLPTFHAKMGRSRDNVALKISEKIKRPETVKSDI 331


>gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 349

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 57  ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN+  ++     +L+D++ L++G VIP    E
Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G N  ++I++++    
Sbjct: 288 --QATIFVEDLPTYHAKMGRSGDNVALKISEKLQRPD 322


>gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila]
          Length = 356

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 98/285 (34%), Gaps = 20/285 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +        +   +    
Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F + +P   +L+     
Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + V +  ++     TL++++ L+ G +IP    E
Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETDLTLRELMELRPGDIIPVEMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +       +  ++GR  +N  ++ITD++    + +K  +H
Sbjct: 288 NLLVYV--EDLPTFHAKMGRTKENVALKITDKL-KRPEGVKTEMH 329


>gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 352

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 19/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 58  ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T +     +L+ ++ +K G +IP    E
Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +       +  +LGR   N  ++ITD+I   
Sbjct: 289 H--ITVMIEELPTFRAKLGRSRDNLALKITDKIPRP 322


>gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
           T6c]
 gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
           T6c]
          Length = 352

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 19/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 58  ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T +     +L+ ++ +K G +IP    E
Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +       +  +LGR   N  ++ITD+I   
Sbjct: 289 H--ITVMIEELPTFRAKLGRSRDNLALKITDKIPRP 322


>gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 349

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 57  ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN+  ++     +L+D++ L++G VIP    E
Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G N  ++I++++    
Sbjct: 288 --QATIFIEDLPTYHAKMGRSGDNVALKISEKLKRPD 322


>gi|239997091|ref|ZP_04717615.1| flagellar motor switch protein FliM [Alteromonas macleodii ATCC
           27126]
          Length = 352

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 19/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 58  ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T +      L+DV+  K G +IP    E
Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVPLRDVMEFKPGDIIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +        +  +LGR   N  ++I ++I   
Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322


>gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330]
 gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis
           ATCC 23365]
 gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445]
 gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686]
 gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94]
 gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1]
 gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1]
 gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
 gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis
           M292/94/1]
 gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
 gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330]
 gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis
           ATCC 23365]
 gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
 gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
 gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 316

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|332140589|ref|YP_004426327.1| flagellar motor switch protein FliM [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550611|gb|AEA97329.1| flagellar motor switch protein FliM [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 352

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 19/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 58  ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T +      L+DV+  K G +IP    E
Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVPLRDVMEFKPGDIIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +        +  +LGR   N  ++I ++I   
Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322


>gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1]
 gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94]
 gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 316

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis
           M163/99/10]
 gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
          Length = 316

 Score =  202 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDTSSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1]
 gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1]
          Length = 316

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 113/292 (38%), Gaps = 6/292 (2%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           GD K++  +       +   L    K+      D    S +S   +     F +  + + 
Sbjct: 29  GDLKSLAHVFKDASSHFCARL----KQGSAAAFDAETGSVESTDKTAFNDIFDKAAIITP 84

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                W  + ++     LV +++E + GA     P   +R    VE+K+A      ++  
Sbjct: 85  LKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANLLAGHLADA 144

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L++  +T   S P       ID    + + L    + T  + +T         L++P+ T
Sbjct: 145 LDRVFNT-GSSQPLFAPGDCIDTADFDRDNLELSRLFTCRIAVTAAGKTGQMHLLLPRST 203

Query: 206 LLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                    +   +  +Q++        ++  +  + ++  +     +L  +  L+IGQV
Sbjct: 204 HKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDALSRLEIGQV 263

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +           L A  ++++ C LG+ G ++T+++ D +N ++  +   + 
Sbjct: 264 LKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELVA 315


>gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513]
 gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
          Length = 316

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +      L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMLLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9]
 gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium
           profundum SS9]
          Length = 348

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 57  ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+   +D         +   + VN+  ++     +L+D++ L+ G +IP    E
Sbjct: 228 LDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIPIDVPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                        Y  ++G+ G N  ++IT ++    
Sbjct: 288 SATV--FVEDLPTYRAKMGKSGDNIALKITQKLKRPD 322


>gi|71278806|ref|YP_268251.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H]
 gi|71144546|gb|AAZ25019.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H]
          Length = 354

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 60  ERFARHMRISLFNMMRRTAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTALITM 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  +     +  S   + S  
Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWSPVMDVS-- 177

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 178 ------FEYLDSEVNPSMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230

Query: 214 LSSQNKSENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D+        +   + V I+T+      +L  V+ L+ G +IP    +
Sbjct: 231 LDAGVQSDKEDTDMRWSKALRDEIMDVPVTINTKFIEVDISLSQVMELQAGDIIPIEMPD 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +        +  +LGR   N  ++I  +I   + +    
Sbjct: 291 NITVL--IEDLPTFRAKLGRSRDNIALKIESKIRRPESAKSEL 331


>gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33]
 gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 316

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        +   +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQGVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
 gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
          Length = 348

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 57  ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+   +D         +   + VN+  ++     +L+D++ L+ G +IP    E
Sbjct: 228 LDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIPIDVPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                        Y  ++G+ G N  ++IT ++    
Sbjct: 288 SATV--FVEDLPTYRAKMGKSGDNIALKITQKLKRPD 322


>gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida
           LFI1238]
 gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein
           FliM) [Aliivibrio salmonicida LFI1238]
          Length = 343

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 97/277 (35%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S       KF    ++       +            +  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVSMVKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKVVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F ++ P   +++     
Sbjct: 176 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVFPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ ++N    + +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESEISLRDLMDLQAGDIIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++G+ G    ++IT++I    
Sbjct: 289 --AATVFVEDLPTYRGKVGKSGDKLAVQITEKIKRPD 323


>gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
 gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
          Length = 353

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 102/304 (33%), Gaps = 25/304 (8%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            R+    G   T+E I+       +  L  + ++      ++S    Q  KF    ++  
Sbjct: 44  DRIVR--GRMPTLELINERFARHMRISLFNMIRK----TAEVSINGVQMVKFGEYQNTLF 97

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
                +            I     LV  L+EN  G       ++  R  +  E+++ +  
Sbjct: 98  VPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRVIQML 157

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIEN 192
           +  I        +               +YL    N          E +   + ++ ++ 
Sbjct: 158 LKLIFEDYKDAWAPVMRVE--------FEYLDSEVNPAMANIVSPTEVIVVSSFHIELDG 209

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKK 250
               F +++P   +++     L +  +S+    D         +   + V++  ++    
Sbjct: 210 GGGDFHVVMPYS-MVEPIRELLDAGIQSDKMDTDKRWSKALQDEVMDVEVSLTAKLLETT 268

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +L+D++ ++ G VIP          +       +  +LG+   N  I+ITD++   +  
Sbjct: 269 LSLRDLMEMEAGDVIPVKMP--DACTVYIEDLPTFRGKLGQSNDNLAIKITDKLKRPEVM 326

Query: 311 LKNF 314
             + 
Sbjct: 327 KSDV 330


>gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           anthropi ATCC 49188]
          Length = 317

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 109/300 (36%), Gaps = 6/300 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F     K       D+     +S   +      
Sbjct: 22  LLRAAGLSGDD--LKSLAHVFKDASTHFC-DRLKHGCAAAFDVEAGQVESTDDAAFADIL 78

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W S  ++     LV +++E + GA         +R    +E+K++  
Sbjct: 79  DKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGMLEQKISAL 138

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
               +++ L+Q  +   ++     +  D     +     S  F   I+  +T        
Sbjct: 139 LAGHLASSLDQVFAANGQALFTAGECTDTAEFDRENFERSRLFACRID--VTAAGKTGQV 196

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            L++P+ T         +   +  NQ          ++  +  + ++  I     TL  +
Sbjct: 197 HLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIELEAFIQQGSMTLDAL 256

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   + 
Sbjct: 257 SMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELVA 316


>gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
           2653]
 gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
           2653]
          Length = 348

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D      +S   +     F
Sbjct: 52  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPVESTDKTAFNDIF 108

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 109 DKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQKIANL 168

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T          D  D     +    LS  F  T  + +T       
Sbjct: 169 LAGHLADALDRVFNTGSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 226

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 227 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 286

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+             A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 287 LSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELV 346

Query: 316 H 316
            
Sbjct: 347 A 347


>gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
           16M]
 gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str.
           Ether]
 gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
           16M]
 gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str.
           16M]
 gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
           16M]
 gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 316

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +     VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
 gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
 gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
 gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
          Length = 344

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S       KF    ++       +            +  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVSMVKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  I     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKVIFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F ++ P   +++     
Sbjct: 176 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVFPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ ++N    + +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESQISLRDLMELEAGDIIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++G+      I+IT++I    
Sbjct: 289 --AATVFVEDLPTYRGKVGQSNDKLAIQITEKIKRPD 323


>gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
 gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
           SV96]
          Length = 331

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 96/271 (35%), Gaps = 16/271 (5%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +F+       +    +I  +  Q  KFS  I         +    +       I  
Sbjct: 69  ERFARFIRISLFNFLRRSAEIFISGIQVQKFSEYIQGLLVPTNLTIVRFNPLRGKALIVI 128

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G + +   Q   R  +  E ++ +  I  I   L +      E    
Sbjct: 129 DPRLVFTVVDNFFGGAGQFYNQTEGREFTPTEMRVVRIIIDMIFKDLKEAWKPVMEL--- 185

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E +    +++ +E       + +P   L     + 
Sbjct: 186 -----DFEYVGAEINPRFANIIGPGEIIVISTIHVELEGGGGDVNIAMPYAMLEPIRELL 240

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +  + S             +  +  V+I++ +  K  T++DV+ LK G VIP       
Sbjct: 241 DAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIPIDMP--D 298

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             IL A G  ++  ++G    NY I+I D++
Sbjct: 299 TVILKAEGIPVFEGKVGISDGNYAIQIIDKV 329


>gi|332994114|gb|AEF04169.1| flagellar motor switch protein FliM [Alteromonas sp. SN2]
          Length = 352

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   IH+       +            I  
Sbjct: 58  ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   + S  
Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E V   + ++ ++     F + +P   +L+     
Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+ +  D         +   + V + T +     +L+ V+  K G++IP    E
Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVSLRQVMEFKPGEIIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +        +  +LGR   N  ++I ++I   
Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322


>gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4]
 gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4]
          Length = 348

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 103/309 (33%), Gaps = 25/309 (8%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           +NT+        R+    G   T+E I+       +  L  + ++      ++S    Q 
Sbjct: 32  ENTTNFDFSSQDRIVR--GRMPTLELINERFARHMRISLFNMLRK----TAEVSINGVQM 85

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KF    ++       +            I     LV  L+EN  G       ++  R  
Sbjct: 86  MKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREF 145

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFV 181
           +  E+++ +  +  +     +  S               +YL    N          E +
Sbjct: 146 TPTERRIIQLLLKIVFEDYKEAWSPVMGVE--------FEYLDSEVNPSMANIVSPTEVI 197

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLN 239
              + ++ ++     F +++P   +++     L +  +S+    D         +     
Sbjct: 198 VVSSFHIEVDGGGGDFHVVMPYS-MVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCP 256

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           VN    +  K  +L+D++ L+ G VIP    E   A +       Y  ++GR      ++
Sbjct: 257 VNFRVNLLEKDISLRDLMELQPGDVIPIDMPEN--ATMFIEDLPTYRVKMGRSEDKLAVQ 314

Query: 300 ITDRINFDQ 308
           +++ I    
Sbjct: 315 VSEEIERPH 323


>gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
           23457]
 gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
           63/9]
 gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
           23457]
 gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
           63/9]
 gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28]
 gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90]
          Length = 316

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 113/301 (37%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S         F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKMAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +     VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13]
 gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13]
          Length = 316

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 7/301 (2%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D      +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T          D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLADALDRVFNTGSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             L++P+ T         +   +  +Q++        ++  +  + ++  +     +L  
Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +  L+IGQV+             A  ++++ C LG+ G ++T+++ D +N ++  +   +
Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELV 314

Query: 316 H 316
            
Sbjct: 315 A 315


>gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
 gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
          Length = 349

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 96/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVDLLEQDISLRDLMELQPGDIIPVTMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       +  ++GR G+N  ++++++I    
Sbjct: 289 H--AVMFVEELPTFRVKMGRSGENLAVQVSEKIKRPD 323


>gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
 gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
          Length = 349

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIPITMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       +  ++GR G+N  ++++++I    
Sbjct: 289 H--ATMFVEELPTFRVKMGRSGENLAVQVSEKIKRPD 323


>gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
 gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
          Length = 336

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 9/272 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    +  KFS  +H+       +   +           
Sbjct: 60  ERFARLLRTGLFNMLRKTAEVSVVGVELLKFSEYVHTLYLPTSLNLVKVPPLRGTGLCVL 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ ++ + Q  A L +  +        
Sbjct: 120 DPKLVFILVDNFFGGDGRYFSKIEGREFTPTETRVIRKVLEQGFADLREAWNPVLPVDF- 178

Query: 160 LEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
             +F +++   +  N    +E V     ++ +        + +P  T+++     LS+  
Sbjct: 179 --EFLNMEVNPQFANIVSPSEAVVVSRFHVELNGGGGDLHITLPY-TMIEPVRDVLSAGV 235

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+    D   +     +     V +  R+   + +L +++ L+ G +IP    E    +
Sbjct: 236 QSDRNDVDQRWVRSLREEMKSAPVRLSCRLTEARVSLHELMRLQPGDIIPIEMPE--TVV 293

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           L A    +    LG  G N  ++IT+ I   Q
Sbjct: 294 LRAAEVPVLRGRLGCSGGNVAVKITEPIRAPQ 325


>gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
 gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
          Length = 349

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFVEDLPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
 gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
          Length = 347

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFSRHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G+   ++I+++I    
Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIQRPH 323


>gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
 gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
 gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 348

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     VN    +  K  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR      ++I++ I    
Sbjct: 289 H--ATMFVEDLPTYRVKMGRSEDKLAVQISEEIERPH 323


>gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
 gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
          Length = 348

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     VN    +  K  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR      ++I++ I    
Sbjct: 289 H--ATMFVEDLPTYRVKMGRSEDKLAVQISEEIERPH 323


>gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
 gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
          Length = 332

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 104/277 (37%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   L++     +     
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFVDLHEAWKAVK----- 170

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 171 ---LIDFEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYS-MVEPIREI 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D   +        +  V+++  +  +  TL+++V LK+G +IP    E
Sbjct: 227 LDAGLQSDTDERDDRWVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTMPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               I +ANG  ++  ++G+   N  +RI D ++  +
Sbjct: 287 --VHIATANGVPMFQAKIGQCNNNLALRILDYVDRTR 321


>gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5]
          Length = 188

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 97/187 (51%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +E  LA     +I+ VL   ++      P+L   +  D   +      +EF   INM++T
Sbjct: 2   IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           +  + S F LI+PQ  LLKT + +   + ++   S +  +    +  + +V ++ RI L+
Sbjct: 62  LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             TL+ +  L +G VIPF         +SAN KE+Y CE GR G+NY +R+ D +N D +
Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181

Query: 310 SLKNFLH 316
            +++ ++
Sbjct: 182 LIRHLMN 188


>gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32]
 gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222]
 gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32]
          Length = 347

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G+   ++I+++I    
Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIERPH 323


>gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01]
 gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01]
          Length = 347

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G+   ++I+++I    
Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIQRPH 323


>gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
           69.14]
 gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
           69.14]
          Length = 281

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 99/269 (36%), Gaps = 19/269 (7%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +    ++S    Q  KF    ++       +            +     LV  L+EN  G
Sbjct: 2   LRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFG 61

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E+++ +  +  + A   +  S               +YL    
Sbjct: 62  GDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE--------FEYLDSEV 113

Query: 174 NR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
           N          E +   + ++ ++     F +++P   +++     L +  +S+    D+
Sbjct: 114 NPSMANIVSPTEVIVVCSFHIEVDGGGGDFHMVMPYS-MVEPIRELLDAGVQSDKMETDV 172

Query: 228 IDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
               A +   ++V I+ R+N   +   L+D++ L++G +IP    E   AI+       Y
Sbjct: 173 RWSSALRDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMPEH--AIMFVEELPTY 230

Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNF 314
             ++GR G    ++I+ +I   +    + 
Sbjct: 231 RVKMGRSGDKLAVQISQKIKRPEAMKTDL 259


>gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1]
 gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1]
          Length = 349

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLMKTVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  K  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEKDVSLRDLMELQAGDIIPIDMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       +  ++GR G+   ++I+++I    
Sbjct: 289 N--ATMFVEELPTFRVKMGRTGEKVAVQISEKIRRPD 323


>gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 348

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     VN    +  K  +L+D++ L+ G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR      ++I++ I    
Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKMAVQISEEIERPH 323


>gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 321

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 107/302 (35%), Gaps = 10/302 (3%)

Query: 20  RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           R  G  GD   ++ ++         F     K       DI     +S   +       +
Sbjct: 24  RAAGLSGDD--LKSLAHVFKDASTHFC-DRLKHGCAAAFDIDAGQVESTDEAAFADILDK 80

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE----TIPQLYNRSLSTVEKKLA 135
             + +      W    ++     LV +++E + GA             +R    +E+K++
Sbjct: 81  AAIIAPLKAERWGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKIS 140

Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
                 ++  L+Q  +   ++     +  D     +     S  F   I+  +T      
Sbjct: 141 ALLAGHLAKSLDQVFAGNGQTLFAAGECIDTAEFDRENFERSRLFACRID--VTAAGKTG 198

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLK 254
              L++P+ T         +   +  NQ++         +  +  + ++  I     TL 
Sbjct: 199 RVHLLLPRSTHKPMQDAVAAFLRRPMNQADPSWAKKMRHEVSRARIELEAFIQQGSMTLD 258

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  +   
Sbjct: 259 ALSMLEIGQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDEL 318

Query: 315 LH 316
           + 
Sbjct: 319 VA 320


>gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
 gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116]
 gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
 gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116]
          Length = 348

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     VN    +  K  +L+D++ L+ G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR      ++I++ I    
Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKMAVQISEEIERPH 323


>gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
 gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
          Length = 349

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   + +     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
 gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
          Length = 349

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELRPGDIIPISMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G    ++++++I    
Sbjct: 289 H--ATMFVEELPTYRVKMGRSGDKLAVQVSEKIKRPD 323


>gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
 gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
          Length = 300

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 9   ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 69  EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 126

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 127 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 179

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 180 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 239

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 240 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 274


>gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
 gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
 gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218]
          Length = 352

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 93/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +        +        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFGDYKDAWAPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHIVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +   L+D++ L++G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDLALRDLMELQVGDIIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR G+   ++++++I    
Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQVSEKIRRPD 323


>gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
 gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
 gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
 gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
 gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
 gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
 gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
 gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
 gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
 gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
 gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
 gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
 gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
 gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
 gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
 gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
 gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
 gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
 gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
 gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
 gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
 gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
 gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
 gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
 gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
 gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
 gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
 gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
 gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
 gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
 gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
 gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
 gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
 gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
 gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
 gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
 gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
 gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
 gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
 gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
 gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
 gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
 gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
 gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
 gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4]
          Length = 349

 Score =  195 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
           VL426]
 gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
 gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
           VL426]
 gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
          Length = 349

 Score =  195 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFIEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
 gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573]
 gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
          Length = 349

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   + +     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603]
          Length = 349

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   + +     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
 gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
 gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
 gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
 gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
 gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
          Length = 347

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 92/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     VN    +  K  +L+D++ L+ G VIP    +
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELRPGDVIPIEMPK 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++G+  +   ++I++ I    
Sbjct: 289 H--AVMFVEELPTYRVKMGQSNEKLAVQISEEIERPH 323


>gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
 gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AN-5034]
 gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           Peru-466]
 gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ4037]
 gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus]
 gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           Peru-466]
 gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AN-5034]
 gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ4037]
 gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
 gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329]
          Length = 348

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 89/277 (32%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     VN    +  K  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       Y  ++GR      ++++  I    
Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKLAVQVSQEIERPH 323


>gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 351

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 60  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 120 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 177

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 178 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 230

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN    +  +  +L+D++ L+ G +IP    E
Sbjct: 231 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIPITMPE 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       +  ++GR G+   ++++++I    
Sbjct: 291 N--ATMFVEELPTFRVKMGRSGEQLAVQVSEKIKRPD 325


>gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
 gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
          Length = 349

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 58  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  + A   +  S        
Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A +   ++V ++ R+NL +    L+D++ L++G VIP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A++       Y  ++GR G+   ++++++I    
Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323


>gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
 gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
          Length = 349

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  +     +  S        
Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F +++P   +++     
Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +   + VN   ++  +  +L+D++ L+ G +IP    E
Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVQLLEQDISLRDLMELQPGDIIPINMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              A +       +  ++GR G+   ++++++I    
Sbjct: 289 H--ATMFVEELPTFRTKMGRSGELLAVQVSEKIKRPD 323


>gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
          Length = 326

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 19/277 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    +IS    +  KFS  +H+       +   +           
Sbjct: 61  ERFARQMRISLFNLLRRSAEISVGGIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVV 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ + T+ Q    L +  +   +    
Sbjct: 121 DPKLVFILVDNFFGGDGRYHAKIEGREFTPTELRVIRMTLDQAFTDLKKAWAPVMDL--- 177

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E V   + ++ ++       + +P   +++     
Sbjct: 178 -----DFEYINSEVNPQFANIVSPTEVVCVSSFHIELDGGGGDLHVTMPYS-MIEPMREL 231

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D   I     +     V + + +     +L+DV+ LK G +IP    E
Sbjct: 232 LDAGIQSDRSDVDERWIRALRDEVKAAEVELSSMLTETTLSLEDVMRLKPGDIIPIDLPE 291

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               +L A G  +   + G       I++T+RI    
Sbjct: 292 --QVLLRAEGIPVLRGKFGVSDGYNAIKVTERIRRAD 326


>gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1]
 gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
          Length = 322

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E +     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++   +    ++V I   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               I+ ANG   +  ++G    N  +++ + I   
Sbjct: 289 D--MIMRANGVPAFKVKMGSHKGNLALQVIEPIERR 322


>gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
 gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
          Length = 322

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 8/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +        +  
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFIDLKEAWQAIMPVNFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +      +        +E V     ++ ++       + +P   +++     L +  +
Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234

Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S  ++Q E  +         ++V +   +  ++  L+DV+ ++ G VIP    E    +L
Sbjct: 235 SDLDDQDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVELPEH--LVL 292

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ANG   +   LG    N  ++I D I   
Sbjct: 293 RANGVPSFKARLGSHKGNLALQIIDPIERR 322


>gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
 gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
          Length = 339

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 8/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARYTRISMFNLLRRTADVSVGGVQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +        S  
Sbjct: 117 DARLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLNQAFVDLGEAWKAVFPVSF- 174

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            E  +             +E V     ++ ++       + +P   +++     L +  +
Sbjct: 175 -EYVHSEVNPSLANIVSPSEVVVVSTFHIELDGGGGEMHITVPYS-MIEPIREVLDAGLQ 232

Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S++  Q E  +           V+++  +  +  TL+D+V LK G +IP         ++
Sbjct: 233 SDSEEQDERWVRALREDVLAAKVDLECDVVRRDITLRDIVDLKEGDIIPVEFP--DYHVV 290

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +ANG  ++  +LG+   N  ++I + I+  
Sbjct: 291 TANGVPMFRTQLGQHNDNLALKILEFIDRS 320


>gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
 gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
          Length = 334

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 23/289 (7%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E +      L++  L  + +       ++S    +  KF+  +HS       + 
Sbjct: 47  GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV  +++N  G       ++  R  +  E ++    + Q  A 
Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   +         D +Y+    N          E+V    +++ ++       +
Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214

Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            +P   +L+     L +  +S+    D         +     V + + +  K+ TL+D+ 
Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLT 273

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK+G V+P          L      +++ E G       ++IT     
Sbjct: 274 RLKVGDVLPIELNP--QVPLCVENIPVFTGEFGIANGMNAVKITATHPP 320


>gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2]
 gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2]
          Length = 253

 Score =  192 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 98/244 (40%), Gaps = 4/244 (1%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
             F +  + +      W  + ++     LV +++E + GA     P   +R    VE+K+
Sbjct: 11  DIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKI 70

Query: 135 AKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
           A      ++  L++  +T          D  D     ++   LS  F  T ++ +T    
Sbjct: 71  ANLLAGHLAGALDRVFNTGSSQPLFAPGDCIDTADFDRDNFELSRLF--TCHIAVTAAGK 128

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTT 252
                L++P+ T         +   +  +Q++        ++  +  + ++  +     +
Sbjct: 129 TGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMS 188

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           L  +  L+IGQV+           L A  ++++ C LG+ G ++T+++ D +N ++  + 
Sbjct: 189 LDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLID 248

Query: 313 NFLH 316
             + 
Sbjct: 249 ELVA 252


>gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
 gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
          Length = 340

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 20/273 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +  + D++    Q  KF   IH+       +   +           
Sbjct: 57  ERFARYTRISLFNLLRRNADVASGGVQILKFGEYIHTLYVPTSLNLVKIRPLRGTGLFIL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   + +  +   +    
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQMVLEQVFHDMKEAWNAVMKV--- 172

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 173 -----DFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDMHVAMPYS-MIEPIREV 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++  E  I    +   +  V ++  +  +K +L+ +  LK G VIP    E
Sbjct: 227 LDAGVQSDVDDVDERWISALQQDILEARVPLNAAVVRQKISLRSLSRLKPGDVIPVELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                ++ANG  I+  ++G+   N  ++I D+I
Sbjct: 287 --TITVTANGVPIFIAKVGQCNGNLALKIVDKI 317


>gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440]
 gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida]
 gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
 gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1]
          Length = 322

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 8/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +        S  
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +      +        +E V     ++ ++       + +P   +++     L +  +
Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234

Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP    E    +L
Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ANG   +   LG    N  ++I D I   
Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322


>gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
 gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
          Length = 322

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 8/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +        S  
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +      +        +E V     ++ ++       + +P   +++     L +  +
Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234

Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP    E    +L
Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ANG   +   LG    N  ++I D I   
Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322


>gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
 gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
          Length = 322

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 8/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +        +  
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVTFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +      +        +E V     ++ ++       + +P   +++     L +  +
Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234

Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP    E    +L
Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ANG   +   LG    N  ++I D I   
Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322


>gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 337

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ TL+ +  LK+G V+P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMTLRQLTGLKVGDVLPIELPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEDIPLFTGEFGISNGNNAVKIT 317


>gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
           11170]
 gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
           11170]
          Length = 384

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 109/269 (40%), Gaps = 6/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  + QS +F   ++S     + S      W +   +   
Sbjct: 116 RLVRMMSTSLRNFTSDNVEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTID 175

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++++ ++++ LLG    T   ++  R  +T+E+ L +R +  + A L+         +  
Sbjct: 176 SSMIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVTFR 235

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +      +R SN  +    + + +E+      ++IP  TL  ++  L+ +   
Sbjct: 236 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMG 293

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V +D  ++     L  ++++++G  I F     +   L
Sbjct: 294 EKFG-RDSIWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQL 352

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
                 ++  ++GR G+N  IR+  + N 
Sbjct: 353 RCGDVPMFDGKMGRKGQNIAIRVDSKHNR 381


>gi|312884904|ref|ZP_07744594.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367381|gb|EFP94943.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 348

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    Q  KF    ++       +            +  
Sbjct: 57  ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTGLVTM 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L+EN  G       ++  R  +  E+++ +  +  I     +  S        
Sbjct: 117 EARLVFILVENFFGGEGRYHSRIEGREFTPTERRIVQLLLKIIFEDYKEAWSPVMGVE-- 174

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E +   + ++ ++     F ++ P   +++     
Sbjct: 175 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHVVFPYS-MVEPIREL 227

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D+    A K   ++V I+ R+N       L+D++ L+ G +IP     
Sbjct: 228 LDAGVQSDKMEADVRWSSALKEEIMDVPINFRVNLLEHDIALRDLMELQPGDIIPVEMPP 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
              A++       Y  ++GR      I+I++ I        + 
Sbjct: 288 H--AVMFVEELPTYRVKMGRSSDKLAIQISEEIKRPDAVKTDI 328


>gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 337

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ TL+ +  LK+G V+P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMTLRQLTGLKVGDVLPIELPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317


>gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           R551-3]
 gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           R551-3]
          Length = 334

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 23/289 (7%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E +      L++  L  + +       ++S    +  KF+  +HS       + 
Sbjct: 47  GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV  +++N  G       ++  R  +  E ++    + Q  A 
Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   +         D +Y+    N          E+V    +++ ++       +
Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214

Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            +P   +L+     L +  +S+    D         +     V + + +  K+ TL+D+ 
Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLT 273

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK+G ++P          L      +++ E G       ++IT     
Sbjct: 274 QLKVGDILPIELSP--QVPLCVENIPVFTGEFGIANGMNAVKITATHPP 320


>gi|330808225|ref|YP_004352687.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376333|gb|AEA67683.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 322

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E +     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  I+   +    ++V I   +  ++  L+D++ ++ G +IP    E
Sbjct: 229 LDAGFQSDLDDQDERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               ++ ANG   +  ++G    N  +++ + I   
Sbjct: 289 D--MVMRANGVPAFKVKMGSHKGNLALQVIEPIERR 322


>gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
 gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
          Length = 322

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +           
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIM----- 172

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E +     ++ ++       + +P   +++     
Sbjct: 173 ---PVNFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E            + V +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDLDDQDERWSKALREDVLDVAVPLSATVARRQLRLRDILHMQPGDVIPVELPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               I+ ANG   +  +LG    N  +++ + I   
Sbjct: 289 D--MIMRANGVPSFKVKLGSHKGNLALQVIEPIERR 322


>gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 382

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 108/267 (40%), Gaps = 6/267 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +      W +   +   
Sbjct: 117 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNYGLLTVD 176

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    T   ++  R  +T+E+ L +R +  + + L+         +  
Sbjct: 177 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 236

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +      +R SN  +    + + +E+      L++P  TL  ++  L+ +   
Sbjct: 237 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 294

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V ++  ++ +   L+DV+  K+G  I    +  +   L
Sbjct: 295 EKFG-RDSIWETHLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKILLNAQPNSPIDL 353

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304
                 ++   +GR G +  IR+ D+I
Sbjct: 354 RCGDVSMFRGRMGRKGPHIAIRVDDKI 380


>gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
           K279a]
 gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas
           maltophilia K279a]
          Length = 334

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 23/289 (7%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E +      L++  L  + +       ++S    +  KF+  +HS       + 
Sbjct: 47  GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                      I     LV  +++N  G       ++  R  +  E ++    + Q  A 
Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199
           L +  +   +         D +Y+    N          E+V    +++ ++       +
Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214

Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            +P   +L+     L +  +S+    D         +     V + + +  K+ TL+D+ 
Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLASKRMTLRDLT 273

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            LK+G ++P     +    +      +++ E G       ++IT     
Sbjct: 274 QLKVGDILPIELSPQVPVCV--ENIPVFTGEFGIANGMNAVKITATHPP 320


>gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
 gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
          Length = 322

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 92/276 (33%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +           
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIM----- 172

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 173 ---PVNFEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  +         + V +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDLDDQDERWVKALREDVLDVAVPMSATVARRQLKLRDILHMQPGDVIPVELPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +L ANG   +   LG       ++I D I   
Sbjct: 289 H--LVLRANGVPAFKARLGSHKGTLALQIIDPIERR 322


>gi|254491591|ref|ZP_05104770.1| flagellar motor switch protein FliM [Methylophaga thiooxidans
           DMS010]
 gi|224463069|gb|EEF79339.1| flagellar motor switch protein FliM [Methylophaga thiooxydans
           DMS010]
          Length = 340

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 11/286 (3%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E I+   G   +  L  + +       +IS +  Q  KFS  +H+       + 
Sbjct: 51  GRMPTLEMINERFGRYLRISLFDMLR----RSAEISVSGIQVMKFSEYMHTLFVPTSLNL 106

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
             L        I     LV T+L+N  G       ++  R  +  E ++ +  +      
Sbjct: 107 IHLHPLRGTGLIVLEPKLVFTILDNYFGGEGRFQARIEGREFTATELRVIRMVLNLCFTD 166

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L +  S   E              +       +E V     ++ ++       L  P   
Sbjct: 167 LTEAWSPVMEVDFEFVSHEV--NPQFANIVSPSEVVVISTFHVELDGGGGDIHLTFPYS- 223

Query: 206 LLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +L+     L +  +S+  ++D         +    +V I  ++     TL  +  LK G 
Sbjct: 224 MLEPIRELLDTGLQSDRTADDGRWSKAMREELMVADVEIWAKLAETSLTLAQIHKLKTGD 283

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +IP    +    +       ++    G   +   ++I + I   + 
Sbjct: 284 IIPIQMPKN--VVAMVEDVPMFRASYGEHNEKAALKIAEVIEHPKD 327


>gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
 gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
          Length = 331

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 94/273 (34%), Gaps = 20/273 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   IH+       +   +           
Sbjct: 57  ERFARYTRISMFNFLRRSADVASGGIQIMKFGEYIHTLYVPTSLNMVKVRPLRGTALFIF 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  ++Q+   + +      +    
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLSQVFTDMKEAWHAVLDL--- 172

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y     N         +E V   + ++ ++       + +P   +++     
Sbjct: 173 -----DFEYYGSEVNPAMANIVSPSEVVVISSFHIELDGGGGDLHVALPYS-MIEPIREF 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  +   +  +           V +   +  ++ +L++V   + G VIP    E
Sbjct: 227 LDAGVQSDVDEVDDRWVQSLQEDIQSAKVPVHGTVVDREISLREVAAFQPGDVIPVDMPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               IL ANG  I+  +LG    N  ++I + I
Sbjct: 287 D--FILQANGTPIFRGQLGVRDDNLAVKIKEPI 317


>gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
 gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
          Length = 325

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 102/271 (37%), Gaps = 8/271 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  K+   IH+       +   ++          
Sbjct: 61  ERFARYTRISLFNLLRRAADVTVGGVQVMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIM 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E +L  + + Q    L +  +  +E S +
Sbjct: 121 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTETRLIHKALEQFFLDLEEAWNPVKELSFD 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
               ++++    N      E V      + +E  +  F + +P   +L+     L S  +
Sbjct: 180 -HLGHEMNPAMANV-INPTEVVVVSTFQVDLEGGSGEFHVAMPYS-MLEPIRDLLVSGFQ 236

Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S  + + E       R      + ++  +  ++ TL+DVV L+ G +IP    E     L
Sbjct: 237 SGEDEKDERWQVALQRDILMAGLPLEMTLAQQEMTLRDVVDLQAGDIIPIELPE--TFEL 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            AN   +Y+C +G    N  +++ ++I   +
Sbjct: 295 KANKVPVYNCTMGVSRGNLAVKVVNQIERPK 325


>gi|307945662|ref|ZP_07660998.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4]
 gi|307771535|gb|EFO30760.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4]
          Length = 410

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 98/271 (36%), Gaps = 6/271 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +      +     +V++S  S  S +F   ++S     +        W     I   
Sbjct: 125 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGMITVE 184

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG     T  ++  R  +T+E  L ++ ++ I     Q  +        
Sbjct: 185 SSLIYSIIDVLLGGGRGATAVRVEGRPYTTIETNLVQQMVSLILQDAEQAFAPLSPVHFT 244

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           +E     +      +R +N     + + + +E+   +  +++P  TL  ++  L+ +   
Sbjct: 245 MERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMG 302

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V +D  +      L  V+ L +GQ + F         L
Sbjct: 303 EKFG-RDPIWEGHLATEVHAAEVEVDAVLYETHLPLGRVMNLDVGQTLVFDIEPTDPVTL 361

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                 +    +G+      I++T  +   +
Sbjct: 362 KCGNVPLTEGTMGKAEDAIAIQVTKNLRKPK 392


>gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
 gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
          Length = 322

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNMLRRSADVAVGGVQGMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E +     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  +         ++V +   +  ++  L+D++ ++ G VIP    +
Sbjct: 229 LDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDVIPVELPQ 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +   I+ ANG   +  +LG    N  +++ + IN  
Sbjct: 289 E--MIMRANGVPSFKVKLGSHKGNLALQVIEPINRR 322


>gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
 gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
          Length = 333

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +H+       +            I  
Sbjct: 57  ERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   L +     +     
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFIDLKEAWKAVK----- 170

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 171 ---AIDFEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYS-MVEPIREV 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D   +        +  V+++  +  ++ TL+D+V L+ G +IP    E
Sbjct: 227 LDAGLQSDTDERDDRWVRALQEDVMEARVDLEADLVRREVTLRDIVDLREGDIIPITMPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               IL+ANG  ++  +LG++  N  +RI   ++   
Sbjct: 287 YN--ILTANGVPMFKTQLGQLNDNLAMRILGFVDRSN 321


>gi|288958672|ref|YP_003449013.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288910980|dbj|BAI72469.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 357

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 6/271 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     + S      W +   +   
Sbjct: 86  RLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVD 145

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG    T   ++  R  +T+E+ L +R +  + + L+         +  
Sbjct: 146 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 205

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +       R +N     + + + +E+      L+IP  TL  ++  L+ +   
Sbjct: 206 FDRLET-NPRFATIARPAN-AAVLVKLRIDMEDRGGRLELMIPYATLEPVRELLLQMFMG 263

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A +    +V++   ++    TL DV+  ++G  I           L
Sbjct: 264 EKFG-RDSIWETHLASELMVTDVDLSAVLDEVTMTLHDVLNWRVGTRILLNATPDGAIEL 322

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                 ++   +GR G +  +R+   +   +
Sbjct: 323 RCGDVSMFQGRMGRKGGHIAVRLEKELPKQE 353


>gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum
           SL003B-26A1]
 gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum
           SL003B-26A1]
          Length = 411

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 105/277 (37%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +      +     +V++S  S  S +F   ++S     +        W     +   
Sbjct: 127 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVE 186

Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LL G    T  ++  R  +T+E  L +R +  I A   Q  +       N
Sbjct: 187 SSLIYSIIDVLLGGGRGTTAVRVEGRPYTTIETNLVRRMVEIILADAEQAFAPLSPVHFN 246

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           LE     +      +R +N     + + + +E+   +  +++P  TL  ++  L+ +   
Sbjct: 247 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMG 304

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   + +D  +      L  V++L +GQ + F         +
Sbjct: 305 EKFG-RDPIWEGHLASEIHAAEIEVDAVLYETHLPLGRVLSLDVGQTLIFDVDPHDPITI 363

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    LG+V  +  IR+T  +   + +L  F
Sbjct: 364 KCGNVPLTEGTLGKVEDSIAIRVTRGLRRPKMTLAAF 400


>gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae 642]
          Length = 322

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP    +
Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +L ANG   +  +LG       +++ + I   
Sbjct: 289 S--LVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322


>gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 337

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317


>gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
 gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea
           MMB-1]
          Length = 329

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 104/283 (36%), Gaps = 21/283 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +H+       +        S      
Sbjct: 57  ERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   L +  +   +    
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAWAPVLKLE-- 173

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                 ++Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 174 ------LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  + + +       +    ++VN+   I  KK TL DV+  K G VIP    E
Sbjct: 227 LDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKN 313
                + AN    +  +LG     Y++++ + I    ++SLKN
Sbjct: 287 --YVTVRANNVPTFRGKLGSSNGKYSVQMKESIKAQMKESLKN 327


>gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
 gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
          Length = 337

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317


>gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 252

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 20/262 (7%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +    D++    Q  KF   +HS       + A +              LV  L++N  G
Sbjct: 3   LRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFG 62

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E ++ +  + Q    L +      E         + +Y+    
Sbjct: 63  GDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--------NFEYINSEV 113

Query: 174 NRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSE 225
           N         +E V     ++ ++       + +P   +++     L +  +S  ++Q E
Sbjct: 114 NPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDE 172

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
             ++        +NV + T I  ++  L+D++ ++ G VIP    +    ++ ANG   +
Sbjct: 173 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSDS--LVMRANGVPSF 230

Query: 286 SCELGRVGKNYTIRITDRINFD 307
             +LG       +++ + I   
Sbjct: 231 KVKLGSHKGKMALQVIEPIARR 252


>gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 337

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317


>gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7]
          Length = 322

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 95/262 (36%), Gaps = 20/262 (7%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +    D++    Q  KF   +HS       + A +              LV  L++N  G
Sbjct: 73  LRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E ++ +  + Q    L +      E         + +Y+    
Sbjct: 133 GDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--------NFEYINSEV 183

Query: 174 NRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSE 225
           N         +E V     ++ ++       + +P   +++     L +  +S  ++Q E
Sbjct: 184 NPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDE 242

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
             ++        +NV + T I  ++  L+D++ ++ G VIP    +    +L ANG   +
Sbjct: 243 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELGDS--LVLRANGVPSF 300

Query: 286 SCELGRVGKNYTIRITDRINFD 307
             +LG       +++ + I   
Sbjct: 301 KVKLGSHKGKMALQVIEPIARR 322


>gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
 gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
           19865]
          Length = 337

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   E    
Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317


>gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
 gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
          Length = 354

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    + +           
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HVKIEGREFTPTENRVVQLVLKQAFKDMEEAWKAVL----- 172

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N         +E V     ++ ++       L +P   +++     
Sbjct: 173 ---PVKFEYLSSEVNPALANIVSPSEVVVVNTFHIELDGGGGDLQLTVPYS-MIEPLREV 228

Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L S  +S+  NQ E  +     +    NV++  ++  +K  L ++  LK G V+     E
Sbjct: 229 LDSGVQSDVGNQDERWMSSLREEIMGANVHLRCKLLDRKIKLSELAALKTGDVLQVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               ++ AN    Y  +LG   + Y ++I +++   +
Sbjct: 289 H--VMIYANEVPTYRGKLGTSREKYAVKIAEKVQRPE 323


>gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato K40]
 gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tomato T1]
 gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 322

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 97/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP     
Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS- 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +L ANG   +  +LG       +++ + I   
Sbjct: 288 -DTLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322


>gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 322

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N +       +E V     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPVMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP     
Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS- 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +L ANG   +  +LG       +++ + I   
Sbjct: 288 -DTLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322


>gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 322

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP    +
Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               ++ ANG   +  +LG       +++ + I   
Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322


>gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
           35937]
          Length = 337

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   E    
Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMEV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLNTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEEIPMFTGEFGVSNGNNAVKIT 317


>gi|296531938|ref|ZP_06894735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
 gi|296267736|gb|EFH13564.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
          Length = 355

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 102/276 (36%), Gaps = 6/276 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   +++     +        W +   +   
Sbjct: 67  RLVRIMSTSLRNFTSDNVEVSIEGITSLRFGDYLNTIPLPAMLVVFKAEEWDNYGLVVVD 126

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG     T  ++  R  +T+E+ L +R    +   L+       E    
Sbjct: 127 SALIYSVVDVLLGGRRGTTAMRIEGRPYTTIERGLIERLTEVVLKDLSDAFGPLAEVEFR 186

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            E   +++      +R SN  V    + + +E+      L++P  T L+     L  Q  
Sbjct: 187 FERL-EVNPRFAAISRPSNAAVLA-RLRVDMESRGGQLQLLLPYAT-LEPVRELLLQQFM 243

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E    D       A +  Q  V +D  ++ +   L DVV L++G +I           L
Sbjct: 244 GEKFGRDSIWETHLAEELRQTEVALDVVLDEQTMRLSDVVRLQVGDLITLGVGPGAPVRL 303

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
                 ++  ++G       +RI   +    + L++
Sbjct: 304 RCGDTSLFEGQVGGRKGRLAVRIDRAMPRQAEGLRD 339


>gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
 gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
          Length = 409

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +      +     +V++S  S  + +F   ++S     +        W     +   
Sbjct: 125 RLVRLTTTSLRNFTSDNVEVSLDSMTNVRFGDYLNSIPLPAILGVFKAKEWDGFGLVTVE 184

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG     +  ++  R  +T+E  L +R I  I     Q        S  
Sbjct: 185 SSLIYSIIDVLLGGGRGSSPTRVEGRPYTTIESNLVRRMIEIILLDAEQAFGPLSPVSFP 244

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           LE     +      +R +N  +  + + + +E+      +++P  TL  ++  L+ +   
Sbjct: 245 LERLET-NPRFAAISRPANAAIM-VELRIDMEDRGGKVEIVLPYATLEPIRDLLLQMFMG 302

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +     +  A + Y   V +D  +      L+ V+ L++GQ + F    +    +
Sbjct: 303 EKFG-RDPIWEEHLATEVYSSEVQVDAVLYENTIPLQRVLNLEVGQTLLFDTGPRDPVQV 361

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
              G ++    +G V    +I I+ ++   + +L  F
Sbjct: 362 KCGGVQLTEGLMGHVDDRISIEISKKLKQPKMTLAAF 398


>gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
 gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum
           centenum]
 gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
          Length = 352

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 104/311 (33%), Gaps = 26/311 (8%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL                        L   F+      V+++     S 
Sbjct: 66  DRLPMLDVVFDRLVR---------------------LLNTSFRNLTSGTVEVTVQQIASV 104

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   +       + +      W ++  +   + L+ ++++ LLG        +  R  +
Sbjct: 105 RFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRSDPAPIDGRPYT 164

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E+ LA+R I  +   L    S         E               SN    +    +
Sbjct: 165 VIERALAERLIRTVLKDLGTAFSPLSAVGFACERVETTPQFA--VITRSNNACISARFQV 222

Query: 189 TIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
            ++       L+IP  TL  ++  L+ +    K   +          +  + +V++   +
Sbjct: 223 ALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFG-RDSMWETHLKNELRRTSVDLSAVL 281

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              + +L D++  K G  +    R    A+L+     ++  E+G+   N  IRI   +  
Sbjct: 282 GQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRNGNVAIRIDADLGA 341

Query: 307 DQKSLKNFLHK 317
             + +   L +
Sbjct: 342 QDEVIHGLLQR 352


>gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 322

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  I+        +NV + T I  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDLDDQDERWINALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               ++ ANG   +  +LG       +++ + I   
Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322


>gi|254504876|ref|ZP_05117027.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11]
 gi|222440947|gb|EEE47626.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11]
          Length = 412

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 104/277 (37%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +      +     +V++S  S  S +F   ++S     +     +  W     I   
Sbjct: 128 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKVEEWDGFGLITVE 187

Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LL G    T  ++  R  +T+E  L ++ +  I     Q  +       N
Sbjct: 188 SSLIYSIIDVLLGGGRGTTAARVEGRPYTTIETNLVQQMVQLILQDAEQAFAPLSPVHFN 247

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           LE     +      +R +N     + + + +E+   +  +++P  TL  ++  L+ +   
Sbjct: 248 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMG 305

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   + +D  +      L  V++L +GQ + F        ++
Sbjct: 306 EKFG-RDPIWEGHLATEIHAAEIEVDAVLYETYLPLGRVLSLDVGQTLVFDVAPTDPVLV 364

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    LG+   +  IR+   +   + +L  F
Sbjct: 365 KCGNIPLTEGTLGKTEDSIAIRVAKNLRKPKMTLAAF 401


>gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25]
 gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
          Length = 322

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 97/273 (35%), Gaps = 20/273 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E +     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  +         ++V +   +  ++  L+D++ ++ G +IP    E
Sbjct: 229 LDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVELPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           +   I+ ANG   +  +LG    N  +++ + I
Sbjct: 289 E--MIMRANGVPSFKVKLGSHKGNLALQVVESI 319


>gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 322

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP    +
Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               ++ ANG   +  +LG       +++ + I   
Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322


>gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 337

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D++Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317


>gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
           DS-1]
 gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
           DS-1]
          Length = 374

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 102/267 (38%), Gaps = 6/267 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +      W +       
Sbjct: 76  RLVRLMTVSLRNFTSDNVEVSLDNVSSIRFGDYLNSIPLPAILAVFRAKQWDNYGMFTVD 135

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E  L +R I  +   +          +  
Sbjct: 136 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIELNLVQRMIEVVLQDVQSAFEPLSPVTLE 195

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+                      + + + +E+      L++P  TL  ++  L+ +   
Sbjct: 196 LDRMETNPRFAAIARPA--NAAILVKLRVDMEDRGGRIELLLPYATLEPIRELLLQMFMG 253

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V ++  ++ ++ +L++V+  ++GQ +      +    L
Sbjct: 254 EKFG-RDTIWESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTLMLNSGPEGAIDL 312

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304
              G  +   ++GRVG +  +R+   I
Sbjct: 313 RCGGVRLGKGKMGRVGNHVAVRVEQAI 339


>gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium
           HTCC2143]
 gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium
           HTCC2143]
          Length = 320

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 97/270 (35%), Gaps = 8/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +H+       +   L        I  
Sbjct: 57  ERFSRYTRISLFNLLRRSADVAVGGIQVQKFGEYVHTLFVPTSLNMIKLRPLRGTGLIVL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + +  A L +           
Sbjct: 117 DAKLVFKLVDNYFGGDGR-HAKIEGREFTPTELRVVEMVLQEAFADLKEAWRAVLPVEFE 175

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +               +E V     ++ ++       + +P   +++    +L S  +
Sbjct: 176 FVNAEV--NPSMANIVSPSEVVVVSTFHIELDGGGGDMHITLPYA-MIEPIRETLDSGLQ 232

Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +  ++  +  I           VN+  ++  K+  L+D++ LK G VIP         ++
Sbjct: 233 TDVDDIDDRWIKSLREDILNATVNMGCKVAEKEVPLRDIIDLKEGDVIPMEMPGD--LVI 290

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
           SANG  +   +LG+   N  +++ ++IN +
Sbjct: 291 SANGIPMMLAKLGQSKGNLALQVVEKINNE 320


>gi|285018173|ref|YP_003375884.1| flagellar motor switch protein [Xanthomonas albilineans GPE PC73]
 gi|283473391|emb|CBA15896.1| probable flagellar motor switch protein [Xanthomonas albilineans]
          Length = 335

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 90/275 (32%), Gaps = 19/275 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 58  ERFARLCRIGLFNLIRRSADLSVRGIDLVKFNDYMHSLYVPSNLNLIKFKPLRGTGLIVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L++  +        
Sbjct: 118 EPTLVFTVVDNFFGGDGRYPTRIEGREFTPTEMRVIQLMLKQTFADLHEAWAPVMNVE-- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 ------FEYLNSEVNPHFANIVTPREYVVVSRFHVELEGGGGEIHVTLPYS-MLEPIREL 228

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         + Y   V I + +  K+ +L+++  L+IG ++P     
Sbjct: 229 LDAGIQSDRVDRDESWNIMLREQLYGSEVTISSVLAQKEMSLRELTRLRIGDILPIDLP- 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L      +++ E G       ++IT     
Sbjct: 288 -KQVPLCVENIPVFTGEFGVSQGQNAVKITATHPP 321


>gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 337

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D++Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LK+G ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317


>gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris]
          Length = 337

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N          E+V     ++ +E       + +P   +L+     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D         +     V + + +  K+ +L+ +  LKIG ++P     
Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPIDLPA 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L      +++ E G    N  ++IT
Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317


>gi|23015785|ref|ZP_00055552.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 395

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 104/265 (39%), Gaps = 6/265 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +      W +   +   
Sbjct: 128 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNFGLLTVD 187

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    T   ++  R  +T+E+ L +R +  + + L+         +  
Sbjct: 188 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 247

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +      +R SN  +    + + +E+      L++P  TL  ++  L+ +   
Sbjct: 248 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 305

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V ++  ++ +   L++V+  K G          +   +
Sbjct: 306 EKFG-RDSIWETHLAEELWLTEVELEAVLDEQVMNLREVLNWKPGSKFMLNATADSQIDM 364

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
                 ++   +GR G++  I++ +
Sbjct: 365 RCGEVAMFRGRMGRKGQHIAIQVDE 389


>gi|83312597|ref|YP_422861.1| flagellar motor switch protein FliM [Magnetospirillum magneticum
           AMB-1]
 gi|82947438|dbj|BAE52302.1| Flagellar motor switch protein fliM [Magnetospirillum magneticum
           AMB-1]
          Length = 393

 Score =  185 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 104/265 (39%), Gaps = 6/265 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +      W +   +   
Sbjct: 126 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNFGLLTVD 185

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LLG    T   ++  R  +T+E+ L +R +  + + L+         +  
Sbjct: 186 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 245

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +      +R SN  +    + + +E+      L++P  TL  ++  L+ +   
Sbjct: 246 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 303

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V ++  ++ +   L++V+  K G          +   +
Sbjct: 304 EKFG-RDSIWETHLAEELWLTEVELEAVLDEQVMNLREVLNWKPGSKFMLNATADSQIDM 362

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
                 ++   +GR G++  I++ +
Sbjct: 363 RCGEVAMFRGRMGRKGQHIAIQVDE 387


>gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus
           trichosporium OB3b]
 gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus
           trichosporium OB3b]
          Length = 339

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 104/258 (40%), Gaps = 5/258 (1%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++  S  + + +   ++     + +    +   +   +G     V  ++E L GA     
Sbjct: 83  VAVESVAATRAAEAQNALDALAITATYGGAEPDARVTLGAERKFVFAMVEGLFGADGSEP 142

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
                R+L++VE +LA+  + +++  L    ++T  ++  L+             R  + 
Sbjct: 143 FYEEERALTSVEIRLARLVLDRLAKALQISFASTAGAALALDPVEPKPEPAGAARRSGSA 202

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQ 237
            +      +T     S  ++  PQ  +L     +L++   +  QS D         +   
Sbjct: 203 LIC--RFRLTAFGAESEALVTFPQG-VLDPLREALAADPATTIQSADPLWAQRMKDRITA 259

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V++   +  +  TL DV   ++GQ++           L   G+ ++ CE+G+    YT
Sbjct: 260 TEVSLTAVMERRDLTLGDVARFEVGQIVELPVSPTGLIALECEGQTLFWCEIGQKDGAYT 319

Query: 298 IRITDRINFDQKSLKNFL 315
           IRI D ++ +Q+ + + L
Sbjct: 320 IRIADFVDKEQEFIDDML 337


>gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
 gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
          Length = 342

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 20/273 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +HS       +   +           
Sbjct: 78  ERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 137

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q  A L +      +    
Sbjct: 138 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDV--- 193

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N  L+N     E V     ++ +++      + +P   +++     
Sbjct: 194 -----NFEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYS-MIEPIREM 247

Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+  +Q E  +         +NV +   +  ++  L+D++ ++ G VIP    E
Sbjct: 248 LDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPE 307

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               I+ ANG   +  +LG    N  +++ + +
Sbjct: 308 D--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 338


>gi|319787093|ref|YP_004146568.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465605|gb|ADV27337.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis
           11-1]
          Length = 339

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 25/309 (8%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P       R+    G   T+E ++     L++  L  + +       DIS       KF 
Sbjct: 38  PYDFASQDRIIR--GRMPTLEMVNERFARLWRIGLFNLIR----RSADISVRGIDMIKFG 91

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             +HS       +            +     LV  +++N  G       ++  R  +  E
Sbjct: 92  EYMHSLYVPTNLNLVRFKPLRGMGLVVFEPKLVFAVVDNFFGGDGRYPTRIEGREFTVTE 151

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTIN 185
            ++ +  + Q  A L +  +   +           +Y+    N          E+V    
Sbjct: 152 MRVIQLMLRQTFADLVEAWAPVMDVE--------FEYINSEINPHFANIVTPREYVVVSR 203

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243
            ++ ++       + +P   +L+     L +  +S+    D         +     V + 
Sbjct: 204 FHVELDGGGGEIHVTLPYS-MLEPIRELLDAGIQSDRIDRDESWNTTLREQLQLAEVTVS 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           + +  K+  L+ +  LK+G ++P      T   +      +++ + G       ++IT  
Sbjct: 263 SVLAQKRIDLRQLTRLKVGDILPIDLS--TTVPVCVENIPVFTGQFGVSNGCNAVKITRT 320

Query: 304 INFDQKSLK 312
                ++ +
Sbjct: 321 HPPGSETAR 329


>gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 242

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 90/253 (35%), Gaps = 20/253 (7%)

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
              Q  KF   +HS       + A +              LV  L++N  G       ++
Sbjct: 2   GGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKI 60

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------ 176
             R  +  E ++ +  + Q    L +      E         + +Y+    N        
Sbjct: 61  EGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--------NFEYINSEVNPAMANIVG 112

Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARK 234
            +E       ++ ++       + +P   +++     L +  +S  ++Q E  I+     
Sbjct: 113 PSEAGVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDERWINALKED 171

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +NV + T I  ++  L+D++ ++ G VIP    E    ++ ANG   +  +LG    
Sbjct: 172 VLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSES--LVMRANGVPSFKVKLGSHKG 229

Query: 295 NYTIRITDRINFD 307
              +++ + I   
Sbjct: 230 KMALQVIEPIARR 242


>gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
 gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
          Length = 323

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 99/277 (35%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTGLFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      +    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAWHAVMD---- 173

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N  L+N     E V     ++ ++       + +P   +++     
Sbjct: 174 ----INFEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  I         ++V +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVELPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               I+ ANG   +  +LG    N  +++ + I   +
Sbjct: 289 N--VIMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323


>gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 395

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 91/272 (33%), Gaps = 7/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    ++S    +  KF   +H+       +   +           
Sbjct: 58  ERFARLFRIGLFNMLRRTPEVSVVGVEMMKFGEYVHTLFVPTSLNLMRVHPLRGTGLFII 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  +++N  G       ++  R  +  E ++ +  I Q    L +  +    +   
Sbjct: 118 DPKLVFIVVDNFFGGDGRFFVKIEGREFTPTELRVIRMLIDQAFENLEEAWNPVMNAEF- 176

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            E  +     +       +E V     ++ ++       + +P  T+++     L +  +
Sbjct: 177 -EYMHSEVNPQFANIVSPSEVVVVSKFHVELDGGGGDIHVTLPY-TMIEPIRELLDAGVQ 234

Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+     E        +     V + + +   + +L+DV+ +K G +IP    E     +
Sbjct: 235 SDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNMKPGDIIPVELPE--AVKV 292

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            A    ++    G    N  I+IT+RI    +
Sbjct: 293 YAEDMPVFRGRYGVRHGNTAIKITERIQPRAE 324


>gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
 gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
          Length = 341

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 106/269 (39%), Gaps = 6/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + S      W +   +   
Sbjct: 75  RLVRMMSTSLRNFTSDNVEVSLDNITSIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVD 134

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG    T   ++  R  +T+E+ L +R +  + + L+         +  
Sbjct: 135 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVTVVLSDLSAAFDPLSPVTFR 194

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +       R +N  V    + + +E+      L++P  TL  ++  L+ +   
Sbjct: 195 FDRLET-NPRFATIARPANAAVLA-RLRIDMEDRGGRLELMLPYATLEPVRELLLQMFMG 252

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +  +V +D  ++     L DV+ LK G  I       +   +
Sbjct: 253 EKFG-RDSIWETHLANELWNTDVELDAVLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDM 311

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
                 ++S ++GR   +  +RI++R+  
Sbjct: 312 RCGNVSLFSGKMGRKNGSIAVRISNRLRK 340


>gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
 gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
          Length = 323

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTGLFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      +    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAWHAVMD---- 173

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N  L+N     E V     ++ ++       + +P   +++     
Sbjct: 174 ----INFEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  I         ++V +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVELPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               ++ ANG   +  +LG    N  +++ + I   +
Sbjct: 289 N--VVMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323


>gi|288962686|ref|YP_003452980.1| flagellar motor switch protein [Azospirillum sp. B510]
 gi|288914952|dbj|BAI76436.1| flagellar motor switch protein [Azospirillum sp. B510]
          Length = 374

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 114/318 (35%), Gaps = 26/318 (8%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           +   +++K+  P+  ++  R+                        L    ++    +V+ 
Sbjct: 80  VSSTTVNKDRLPMLDVVFDRMVR---------------------MLNTSLRQFASTNVEA 118

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           S +  +  +++    + +   +   A    W +   +   + L+  +++ LLG       
Sbjct: 119 SLSKIEWLRYTDFQDAIELPALIGVARAEPWDNQMLVTIDSALIYCMMDVLLGGRRSRPG 178

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R+ +++E+K+ +R +  +   L Q      +     +           T   +   
Sbjct: 179 RIDGRAYTSIERKMTERMMKVVLQDLGQSFDPLAQVDFVFDRLEVNPQFATITRATN--A 236

Query: 181 VTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
           +  + + + +E       ++IP  TL  ++  L+ +    K  +           +  + 
Sbjct: 237 IIRVRIAVEVERRTGHIDIVIPYATLEPIRGKLVQMFMGEKFGH-DTVWESHLKNELMRS 295

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +   +   K  L +V+  + GQ +       +  ++ +    +++  +G+   N  +
Sbjct: 296 KLELVAVLAETKVPLGEVLAWQKGQSLKLRISPDSTVMVFSKTIPLFAGHMGQRNDNIAV 355

Query: 299 RITDRINFDQKSLKNFLH 316
           +I   ++  Q+ +   L 
Sbjct: 356 KIDTDLDTKQELIDGLLS 373


>gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
 gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
          Length = 412

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 104/277 (37%), Gaps = 6/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +      +     +V++S  S  S +F   ++S     +        W     I   
Sbjct: 128 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLITVE 187

Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L+ ++++ LL G    +  ++  R  +T+E  L ++ +A I        +       N
Sbjct: 188 SSLIYSIIDVLLGGGRGTSAVRVEGRPYTTIETGLVQQMVALILQDAEHAFAPLSPVHFN 247

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           LE     +      +R +N     + + + +E+   S  +++P  TL  ++  L+ +   
Sbjct: 248 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMG 305

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   V +D  +      L  V++L +GQ + F        ++
Sbjct: 306 EKFG-RDPIWEGHLATEIHAAEVEVDAVLYETYLPLGRVLSLDVGQTLVFDKEPTDPVMI 364

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +    LG+V  +  IR+   +   + +L  F
Sbjct: 365 KCGNIPLTEGTLGKVDDSIAIRVAKNLRKPKMTLAAF 401


>gi|15596640|ref|NP_250134.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1]
 gi|107100877|ref|ZP_01364795.1| hypothetical protein PaerPA_01001907 [Pseudomonas aeruginosa PACS2]
 gi|116049388|ref|YP_791809.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892684|ref|YP_002441553.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58]
 gi|254234542|ref|ZP_04927865.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719]
 gi|254239793|ref|ZP_04933115.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192]
 gi|296390190|ref|ZP_06879665.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAb1]
 gi|313106442|ref|ZP_07792673.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016]
 gi|12230925|sp|Q51465|FLIM_PSEAE RecName: Full=Flagellar motor switch protein FliM
 gi|9947394|gb|AAG04832.1|AE004574_3 flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1]
 gi|115584609|gb|ABJ10624.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166473|gb|EAZ51984.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719]
 gi|126193171|gb|EAZ57234.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192]
 gi|218772912|emb|CAW28724.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58]
 gi|310879175|gb|EFQ37769.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016]
          Length = 323

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLE---- 173

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 174 ----MNFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  I         + V +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               ++ ANG   +  +LG    N  ++I + +   +
Sbjct: 289 H--MVMRANGVPAFKVKLGAHKGNLALQILEAVERSR 323


>gi|152984239|ref|YP_001349238.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7]
 gi|150959397|gb|ABR81422.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7]
          Length = 323

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLE---- 173

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 174 ----MNFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  I         + V +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               ++ ANG   +  +LG    N  ++I + +   +
Sbjct: 289 H--MVMRANGVPAFKVKLGAHKGNLALQIVEAVERSR 323


>gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
 gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
          Length = 332

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 20/272 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +  + D+S    Q  KF   IH+       +   +           
Sbjct: 57  ERFARYTRISLFNLLRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   + +      +    
Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLNQVFHDMKEAWHAVLQVE-- 173

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                  +YL    N  ++N     E V     ++ ++         +P   +++     
Sbjct: 174 ------FEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++  E  ++       ++NV I+T +  ++ +L+D+  +K G VIP    E
Sbjct: 227 LDAGVQSDIDDVDERWVNALQEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVEIPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                ++ANG  IY   LG       +RI DR
Sbjct: 287 H--LTVTANGIPIYKATLGTRDGKLALRIHDR 316


>gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium
           HP15]
          Length = 332

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 103/277 (37%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        M  + D+S    Q  KF   IH+       +   +           
Sbjct: 57  ERFARYTRISLFNLMRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   + +      +    
Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMKEAWHAVLKV--- 172

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +YL    N  ++N     E V     ++ ++         +P   +++     
Sbjct: 173 -----DFEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++  E  ++       +++V I+T +  ++ +L+D+  +K G +IP    E
Sbjct: 227 LDAGVQSDIDDVDERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                ++ANG  IY   LG       +RI +R +  +
Sbjct: 287 H--LTVTANGIPIYKATLGTRDGKLALRIHERASVPK 321


>gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166]
          Length = 323

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 20/273 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +HS       +   +           
Sbjct: 59  ERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q  A L +      +    
Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDV--- 174

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N  L+N     E V     ++ +++      + +P   +++     
Sbjct: 175 -----NFEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYS-MIEPIREM 228

Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+  +Q E  +         +NV +   +  ++  L+D++ ++ G VIP    E
Sbjct: 229 LDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPE 288

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               I+ ANG   +  +LG    N  +++ + +
Sbjct: 289 D--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 319


>gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
           ATCC 25259]
          Length = 334

 Score =  182 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 98/270 (36%), Gaps = 7/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +   V+IS    +  K+S  I +       +            +  
Sbjct: 59  ERFARLLRIGLYNFLRRGVEISVGPVRVSKYSEFIRNLVVPTNLNLVQFKPLRGTALMIF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + +LV  +++NL G       ++  R  +  E ++ +R +  +     +           
Sbjct: 119 NPDLVFLMVDNLFGGDGRFHTRVEGRDFTQTEHRIIQRILNIVFEAYGKSWEPVYPIEFE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     NE V  +   + +  ++      +P   +++     L+S  +
Sbjct: 179 FIR-SEMNTQFANI-ATPNEVVVAVTFAIELGQISGEMHFCMPYS-MIEPIKDLLTSSLQ 235

Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +EN    +  I    ++     V I   +   + +L+D+V LK+G VIP        A +
Sbjct: 236 AENLEVDKRWIRLMRQQIQLAEVEIVADLGTAEVSLRDIVNLKVGDVIPLDIPPTIEAKV 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +G  +  C  G+    YT+R+   ++  
Sbjct: 296 --DGVPVMECAYGKFNGQYTLRVEKLLSTS 323


>gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893]
 gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893]
          Length = 332

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 20/272 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +  + D+S    Q  KF   IH+       +   +           
Sbjct: 57  ERFARYTRISLFNLLRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   + +      +    
Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMREAWHAVLKV--- 172

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +YL    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 173 -----DFEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHMALPYS-MIEPIRDV 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++  E  +         +NV I+T +  ++ +L+D+  LK G +IP    E
Sbjct: 227 LDAGVQSDIDDVDERWVSALQEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVEIPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                L+ANG  +Y   +G       +RI DR
Sbjct: 287 --LLTLTANGIPVYKATMGTRDGKLALRIHDR 316


>gi|88800464|ref|ZP_01116028.1| flagellar motor switch protein FliM [Reinekea sp. MED297]
 gi|88776794|gb|EAR08005.1| flagellar motor switch protein FliM [Reinekea sp. MED297]
          Length = 360

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 102/286 (35%), Gaps = 20/286 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +H+       +   +           
Sbjct: 57  ERFARYTRISMFNFLRRSADVATGGIQILKFGEYVHTLYVPTSLNLVKVRPLRGTALFIL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  ++Q+   + +      +    
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRVVQMILSQVFQDMKEAWGAVLDV--- 172

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 173 -----DFEYMSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHMTLPYS-MIEPVRDV 226

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  +   E  ++          V  +  +  ++  L+++V L+ G VIP    E
Sbjct: 227 LDAGVQSDVDEIDERWVESLRHDILGAKVPTNAVVAEREIKLRELVDLQAGDVIPIDLPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                 +ANG  ++  +LG+ G N  +R+   +    + + +   +
Sbjct: 287 --TIKFTANGIPLFETKLGQCGDNLALRVERPVRKMSRDIGDMKTR 330


>gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
 gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum]
 gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
          Length = 362

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 102/272 (37%), Gaps = 6/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S     S +F   ++S     + +      W +   +   
Sbjct: 92  RLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLAVFKAEEWDNYGLMVID 151

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L+ ++++ LLG    T   ++  R  +T+E+ L +R +  + + L+         +  
Sbjct: 152 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 211

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
            +     +       R +N     + + + +E+      L+IP  TL  ++  L+ +   
Sbjct: 212 FDRLET-NPRFATIARQAN-AAVLVKLRIDMEDRGGRLELLIPYATLEPVRELLLQMFMG 269

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +  +V++   ++    +L DV+  +IG  +           L
Sbjct: 270 EKFG-RDSIWETHLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLLNVAPDDTIEL 328

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 ++   +GR G N  +RI       ++
Sbjct: 329 RCGDVPMFLGRMGRKGGNIAVRIDREAPKPEQ 360


>gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
 gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
          Length = 331

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 20/272 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S +  Q  KF   +H+       +   +           
Sbjct: 57  ERFARYTRISLFNLLRRTADVSTSGVQIMKFGEYVHTLYVPTSLNLCKIRPLRGTSLFVL 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   + +   T  +    
Sbjct: 117 DAKLVFKLVDNFFGGQGR-HAKIEGREFTPTENRIVQMMLNQVFHDMQEAWQTVLKV--- 172

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +YL    N  ++N     E V     ++ ++         +P   +++     
Sbjct: 173 -----NFEYLSSEVNPSMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+    D   +         ++V +++ I  +  +L++V   K G +IP    E
Sbjct: 227 LDAGVQSDIDDTDERWVSALQEDIKTVSVAVNSTICRRHISLREVAKFKAGDIIPIEMAE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                ++ANG  IY+  LG       +RI  R
Sbjct: 287 H--LTVTANGIPIYTATLGTRDDKLALRIHGR 316


>gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
 gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
          Length = 324

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 98/271 (36%), Gaps = 20/271 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +H+       +        S      
Sbjct: 58  ERFARYTRISLFNMLRRTADVSSGGLQVMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   L +  +   +    
Sbjct: 118 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFKDLTEAWAPVLKLE-- 174

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                 ++Y+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 175 ------LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 227

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  + + +       +    ++V +   +  +K +L +V+  K G +IP    E
Sbjct: 228 LDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEMPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                + ANG   +  +LG   + Y++++ +
Sbjct: 288 --FVTVRANGVPTFKGKLGVSNERYSVQMQE 316


>gi|254418956|ref|ZP_05032680.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3]
 gi|196185133|gb|EDX80109.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3]
          Length = 346

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 71  RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 130

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R +  +              + N
Sbjct: 131 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDARLAFEPLTPVTFN 190

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+               +      I + + +E+      L++P  TL  ++  L+     
Sbjct: 191 LDRLETNPRFAAIARPANAA--ILIKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 248

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +     +   ++ +   L  V+ LK+G  +       +   +
Sbjct: 249 EKFG-RDNIWEGHLATELWTTETEVRAVLDEQMMPLSTVLNLKVGDTMMLNATPDSEVSI 307

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A    + +  +GR G++  +RI   +N +
Sbjct: 308 RAGAIPLTTGRMGRKGQHIAVRIEGPVNPE 337


>gi|170747253|ref|YP_001753513.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653775|gb|ACB22830.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
           JCM 2831]
          Length = 404

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 98/274 (35%), Gaps = 6/274 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V+++  +  S +F   +++     +        W ++  +   
Sbjct: 121 RMIRLLSTSLRNLFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFRAEQWENSGLVTVD 180

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL     + LLG     +  +L  R  + +E  L +R +  +   L          S  
Sbjct: 181 SNLAYATFDLLLGGKRGGSSSRLDGRPFTAIEMTLVRRLVEIVLGDLEMSFQPLSPVSFG 240

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           ++           T          I++ + ++       ++ P  T ++     L+    
Sbjct: 241 IDRIETNPRFATIT--RPGNAAILISLRLDVDGRGGMLQILFPYAT-IEPIRELLTQSFM 297

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E    D       A + +Q +V +D  ++     LK V++LK+G+ + F  +      +
Sbjct: 298 GEKLGRDHVWEGHLATEIWQADVTMDAVLHEMMLPLKQVMSLKVGETLMFDAKPSDLITV 357

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                 +    +GRV  +  +++T  +   + ++
Sbjct: 358 RCGDWALTQGRIGRVDGHIAVQVTRPLRRSRTTI 391


>gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
 gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
           3776]
          Length = 375

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 9/289 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +   +L   + +         +   V++   S     +S  + S +    F+        
Sbjct: 65  RAFQALHEGFSREFGAALSGMLRAIVEVKLISVDQLTYSEFVFSLENPTCFNLLESKGLE 124

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +  +  S +++  +++ LLG   E+IP + +R L+ +E +L  R    +   L      
Sbjct: 125 GHLILDLSPSIIFPIVDRLLGGGKESIPSIPSRPLTEIELQLVSRITLLVINGLENAWHN 184

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
                  +        L +      NE +  ++  +T+  V     L IP  T ++    
Sbjct: 185 VCSLGLKVTQIESNPQLVQIV--PPNEVIVLVSFEITMGEVRGIMNLCIPFNT-IEPLSG 241

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQ---LNVNIDTRINLKK--TTLKDVVTLKIGQVIPF 267
            LSS   S  Q + L DP  R   +       +   +NL     T +D+  L +G VI  
Sbjct: 242 KLSSDTWSAYQKKGL-DPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDVIMT 300

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
            H ++    +   G  ++  + G V     IR+T  +   +  L+  L 
Sbjct: 301 EHPKEDGLEVVVEGCPMFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349


>gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB
           48]
 gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB
           48]
          Length = 387

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 101/272 (37%), Gaps = 6/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 110 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 169

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R +  I              + N
Sbjct: 170 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILHDAKMAFEPLTPVNFN 229

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+               +      + + + +E+      L++P  TL  ++  L+     
Sbjct: 230 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRVELLLPYATLEPIRKMLLQQFMG 287

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   + +   ++ ++  L +V+ LK+G+ I       +   L
Sbjct: 288 EKFG-RDNIWESHLATELWTTQMEVRAVLDEQQMPLSEVLNLKVGETIVLNATADSPIEL 346

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 + + ++GR G N  +R+   +    K
Sbjct: 347 RCGTIPLTNGKMGRKGHNIAVRVDHPLAASTK 378


>gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC1989]
 gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC1989]
          Length = 340

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S       KF   +H+       +            +  
Sbjct: 57  ERFARYTRISMFNLLRRTADVSVGGINIQKFGEYVHTLYVPTSLNMVKFRPLRGTALVVF 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    + +           
Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDMKEAWRAVL----- 170

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +++    N  ++N     E V   + ++ ++       + IP   +++     
Sbjct: 171 ---PIDFEHVNSEVNPSMANIVSPSEVVVVSSFHVELDGGGGEMHITIPYS-MIEPIREM 226

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S++   D   ++       Q NV +DT     K  LKD+V LK G VIP    E
Sbjct: 227 LDAGLQSDSDERDDRWVNSLREDIMQANVRLDTNFVQSKILLKDIVDLKEGDVIPIELPE 286

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +   I +ANG  ++  ++G+   N+ +++ + I   +
Sbjct: 287 E--YITNANGVPMFKVDIGQSNGNFALKVNEVIERTK 321


>gi|329888223|ref|ZP_08266821.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC
           11568]
 gi|328846779|gb|EGF96341.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC
           11568]
          Length = 352

 Score =  179 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 100/270 (37%), Gaps = 6/270 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 76  RLVRLMTTSLRNFTSDNVEVSLDTISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 135

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R +  I     Q          N
Sbjct: 136 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILNDARQAFEPLTPVHFN 195

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+                      + + + +E+      L++P  TL  ++  L+     
Sbjct: 196 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRVELLLPYSTLEPIRKMLLQQFMG 253

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +     +   ++ ++  L  V+ LK+G  +      ++   +
Sbjct: 254 EKFG-RDNIWEGHLATELWTTETEVRCVLDEQQMPLSKVLDLKVGDTLMLNVTPESEVSV 312

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
            A    + +  +GR G++  +R+   I+ D
Sbjct: 313 RAGSIPLTTGRMGRKGQHIAVRVEGPISTD 342


>gi|226941271|ref|YP_002796345.1| flagellar motor switch protein FliM [Laribacter hongkongensis
           HLHK9]
 gi|226716198|gb|ACO75336.1| FliM [Laribacter hongkongensis HLHK9]
          Length = 329

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 7/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +  + +IS    +  K+S  I +       +   +        +  
Sbjct: 57  ERFARNLRIGLFNFIRRNAEISVGPVKVQKYSEFIRNLVVPTNLNLCHVKPLRGTALLIF 116

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  +++NL G+      ++  R  +  E+++ +R +  + +   +           
Sbjct: 117 DPDLVFLVVDNLFGSDGRYHVRVEGRDFTPTEQRIIRRLLDVVFSEYQKAWEPVYPIEFL 176

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N      E V ++   + +      F + +P   +++     LSS   
Sbjct: 177 YMR-SEMNTQFANI-ATPTEVVVSMTFRIELGAGGGDFHVCMPYS-MVEPIRDQLSSTMA 233

Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++        +   +R+     V +   +   + TL D++ LK G VIP    E   A +
Sbjct: 234 ADRTEIDNRWVSLLSRQVQIAEVELVATLAEAQITLGDILNLKTGDVIPVEIPESIVADV 293

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           S  G  +  C  G     Y +R+   +    + 
Sbjct: 294 S--GIPVLDCRYGTANGQYALRVERLLAGAHEL 324


>gi|114570494|ref|YP_757174.1| flagellar motor switch protein FliM [Maricaulis maris MCS10]
 gi|114340956|gb|ABI66236.1| flagellar motor switch protein FliM [Maricaulis maris MCS10]
          Length = 376

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 101/269 (37%), Gaps = 6/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 101 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAQQLDNYGLLTVD 160

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R I  +     Q  +   +   +
Sbjct: 161 SNLIYSIVDVLLGGRRGTSAMRIEGRPYTTIERMLVQRMIEVVLGDAKQAFAPLTDVEFD 220

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           LE               +      + + + +E+      L++P  TL  ++  L+     
Sbjct: 221 LERVETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 278

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   + +   ++ ++ +L  V  LK+G  +       +   L
Sbjct: 279 EKFG-RDNIWEGHLATELWSTKMEVQAVLDEQRVSLGTVANLKVGDTLYLDASPSSDVEL 337

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +    +GR+G N  +R++  ++ 
Sbjct: 338 RCGQVPLTRGRMGRIGHNVALRLSGPLSP 366


>gi|302383953|ref|YP_003819776.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194581|gb|ADL02153.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 356

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 80  RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 139

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R +  I A              N
Sbjct: 140 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILADAQAAFEPLTPVHFN 199

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+               +      + + + +E+      L++P  TL  ++  L+     
Sbjct: 200 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRVELLLPYATLEPIRKMLLQQFMG 257

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +  +  +   ++ +   L  V+ LK+G  +       +   +
Sbjct: 258 EKFG-RDNIWEGHLATELWTTDTEVRAVLDEQSCPLSTVLNLKVGDTLMLNATPDSDISI 316

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
                 + +  +GR G++  IR+   I+ +
Sbjct: 317 RCGSIPVTTGRMGRKGQHIAIRVEGPISVE 346


>gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC2047]
          Length = 329

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 20/275 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +F  +     +     ++    ++ KFS            S   +           
Sbjct: 63  ERFARFTEQSMFNLLRETPVVTAAKIENIKFSEYTQMLGIPSSLSLVKIHPLRGTAMFVL 122

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV+ L++   G        +  R  +  E+++ ++ ++Q+   + Q   T  +    
Sbjct: 123 DADLVVNLVDRFFGG-GVHDNAIGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMD---- 177

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                D +YL    N         +E V      + IE       + IP   +L+    +
Sbjct: 178 ----IDFEYLSNEENPAMIKAISPSEVVVLSTFEIKIEEKGGRIQVAIPYS-MLEPVREA 232

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L S  + +N+  D    +   R     +V I  R+  +K TL++++  K G VIP    E
Sbjct: 233 LDSGVQVDNEYTDGNWAEALQRDLRYASVPISCRVAERKITLREILNFKAGDVIPIDMPE 292

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +  IL ANG  IY   +G   ++  ++I  +I+ 
Sbjct: 293 SS--ILMANGVPIYEAAVGASNEHLALKIKRQIDR 325


>gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
 gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
          Length = 324

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 86/267 (32%), Gaps = 7/267 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    +  KFS  +HS       +               
Sbjct: 60  ERFARHLRVRLFNMLRRSAELSVVGTRVSKFSEYMHSLFVPTSLNLVRAHPLHGTGLFVF 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  + +E ++    +      + +      +    
Sbjct: 120 DPKLVFILVDNFFGGDGRYHTRIEGRDFTPMEMRVVHGILEGAFEDMVKAWQPVMDLRFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +       +        E V     ++ ++    +    +P   +++     L +  +
Sbjct: 180 FLNSEV--NPQFANIVSPTEIVVISEFHIELDGGGGNLHFTLPYS-MIEPIREQLDTGLQ 236

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+    D   +     +     V + + +   + T+++++ ++ G +IP    E     L
Sbjct: 237 SDRSDVDQRWMKALEEEIQDAEVEVSSTLTETEVTVQELLDIQPGDIIPINLPE--TVTL 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304
                 ++  + G       I++TDRI
Sbjct: 295 KVEDIPLFRGKFGVSDGKNAIQVTDRI 321


>gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
 gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
          Length = 322

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 20/277 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D+S    Q  KF   +H+       +        S      
Sbjct: 58  ERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q+   L +  +        
Sbjct: 118 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAWAPVLSVE-- 174

Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                 +DY+    N  ++N     E V     ++ ++       + +P   +++     
Sbjct: 175 ------LDYIGSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 227

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  + + +       +   +LNV +   +      L+DV+  K G +IP    E
Sbjct: 228 LDAGVQSDVDEKDDRWGKSLQQDVKELNVELSAAVAHVDVPLQDVLKFKAGDIIPVDIPE 287

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                + ANG      +LG   + Y++++ +     +
Sbjct: 288 --FITVRANGLPTIKGKLGVSNEKYSVQVVENYKLPK 322


>gi|188582489|ref|YP_001925934.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
 gi|179345987|gb|ACB81399.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
          Length = 405

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 94/273 (34%), Gaps = 4/273 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V+++  +  S +F   +++     +       SW  +  +   
Sbjct: 122 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADSWEGSGLVTVE 181

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             L  + ++ LLG     +  +L  R  +T+E  L +R +  I   L             
Sbjct: 182 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEMSFQPLSPVRFG 241

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218
           ++           T          I + + ++       ++ P  T+     + + S   
Sbjct: 242 IDRIETNPRFATIT--RPGNAAILITLKLDMDGRGGGMQILFPYATVEPIRDLLMQSFMG 299

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +   + +      A + +Q +V ++  ++     LK V+ LK+G  + F  +      + 
Sbjct: 300 ERLGRDQVWESHLATEIWQADVEMEAVLHEVTLPLKRVLNLKVGDTLMFDRKPSDLITVR 359

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                +    +GR+     +++   +   + +L
Sbjct: 360 CGDWALTQGRIGRIDDAIAVQVARPLRQSRTTL 392


>gi|121997289|ref|YP_001002076.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1]
 gi|121588694|gb|ABM61274.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1]
          Length = 381

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 113/308 (36%), Gaps = 18/308 (5%)

Query: 8   KNTSPLHPILL---ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           +++  L P       R+    G   T+E I+   G L++  L  + +       ++S T 
Sbjct: 30  EDSGELRPYTFTAEERIVR--GRMPTLEMINERFGRLFRIGLFNMLR----RTPEVSVTG 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  KF   +H+       +   +     +        LV  +++N  G       ++  
Sbjct: 84  VEMMKFGEYVHTLFVPTSLNIIRVPPLRGSGLFVIDPKLVFLVVDNFFGGGGHFYLKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLSNEFVTT 183
           R  +  E+++ +  + Q    L +  +          ++ +++   +  N     E V  
Sbjct: 144 REFTPTEQRVIRLMLDQAFDDLREAWNPVLGVDF---EYVNMEVNPQFANIVSPTEVVVV 200

Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVN 241
              ++ ++       + +P  T+++     L +  +S+    D         +     V 
Sbjct: 201 SKFHVELDGGGGDIHVTLPY-TMVEPIREILDAGVQSDRNDVDDRWAKALREEMKTAPVT 259

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           + + +   + TL+D++ LK G VIP    E+    +      ++    G    N  +RI 
Sbjct: 260 LHSTLARSEITLRDLMHLKAGDVIPIEMPERVVVEVE--EVPVFYGTYGVCEGNAALRID 317

Query: 302 DRINFDQK 309
           +++   ++
Sbjct: 318 EKVQAPER 325


>gi|163852467|ref|YP_001640510.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|218531223|ref|YP_002422039.1| flagellar motor switch protein FliM [Methylobacterium
           chloromethanicum CM4]
 gi|240139804|ref|YP_002964281.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|254562219|ref|YP_003069314.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
 gi|163664072|gb|ABY31439.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           PA1]
 gi|218523526|gb|ACK84111.1| flagellar motor switch protein FliM [Methylobacterium
           chloromethanicum CM4]
 gi|240009778|gb|ACS41004.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           AM1]
 gi|254269497|emb|CAX25463.1| flagellar motor switch protein FliM [Methylobacterium extorquens
           DM4]
          Length = 406

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 95/273 (34%), Gaps = 4/273 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V+++  +  S +F   +++     +       +W  +  +   
Sbjct: 123 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADAWEGSGLVTVE 182

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             L  + ++ LLG     +  +L  R  +T+E  L +R +  I   L             
Sbjct: 183 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLELSFQPLSPVRFG 242

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218
           ++           T          I + + ++       ++ P  T+     + + S   
Sbjct: 243 IDRIETNPRFATIT--RPGNAAILITLKLDMDGRGGGMQILFPYATVEPIRDLLMQSFMG 300

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +   + +      A + +Q +V+++  ++     LK V+ LK+G  + F  +      + 
Sbjct: 301 ERLGRDQVWESHLATEIWQADVDMEAVLHEVTLPLKRVLNLKVGDTLMFDRKPSDLITVR 360

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                +    +GR+     ++I   +   + +L
Sbjct: 361 CGDWALTQGRIGRIDDAIAVQIARPLRQSRTTL 393


>gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105]
 gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105]
          Length = 348

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 108/312 (34%), Gaps = 11/312 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            H+   P +     R+    G   T+E I       + + +       M    +IS    
Sbjct: 30  THEGVRPYNLATQERIVR--GRMPTLEII----NERFARLIRIGLFNFMRRSPEISVGPV 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +  K++  I +       +  ++     N       +LV  +++NL G       ++  R
Sbjct: 84  KVLKYNEFIRNLVVPTNLNIMAMKPLRGNALFIFDPSLVFAVIDNLFGGDGRFHTRVEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++  R +  I     +  +      P                   +E V T +
Sbjct: 144 DFTQTEQRIIARMLEVIREEFVKAWAPVFPLKPEYLRSEMHTQFA--NIATPSEIVVTTS 201

Query: 186 MNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
            ++ +     S  + IP  T+     L+  S Q       +  +    ++     V++  
Sbjct: 202 FSIELGAGGGSLHICIPYSTMEPIRDLLYSSMQGDQAEPDKRWVTMLKKQVQMAEVDLVA 261

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +   + T+ D++ L+IG VIP             +   +++C  G  G  Y +++ + +
Sbjct: 262 SLASTQLTVADIMELRIGDVIPIEI--DKVIEARVDNVPVFNCSYGTSGGQYALKVEEVL 319

Query: 305 NFDQKSLKNFLH 316
               +S  + L+
Sbjct: 320 AVSNESHADALN 331


>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
 gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
           DSM 14796]
          Length = 323

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 116/282 (41%), Gaps = 14/282 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  + G L    L  + +  M LD    +++     +   I+S     +    S 
Sbjct: 52  RTLELIHETYGRLVATSLSSLVRGSMRLD----FSAIDQVPYEEFINSLIPPAMIVIISW 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            +   +  +  + N+ + L++ LLG S   +P    R+ + +E  L  + + +    L +
Sbjct: 108 ENTGLSMVLEMNLNITLALVDRLLGGSG--LPPPSPRAPTDIENALIAKLVDRHLVALEE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              T    S             +     +NE V  I M++ I +++    L IP   LL+
Sbjct: 166 AWRTVYPVSLTFVGTETNPEFAQIV--PANEMVVLITMDIGIGDLSGIMSLAIPYS-LLE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TLKDVVTLKIGQV 264
             +  LS+Q     +  +  D      YQ  LNV ++ ++ L      L+D++ L++G  
Sbjct: 223 PIVNHLSAQRFFVKKKAE-NDIEREYVYQHVLNVMVNLQVCLGHMHIPLRDLINLRVGDT 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +    +      +    K+ +    GRVGKN  I+IT+ +  
Sbjct: 282 LLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITEVLRE 323


>gi|197104384|ref|YP_002129761.1| flagellar motor switch protein FliM [Phenylobacterium zucineum
           HLK1]
 gi|196477804|gb|ACG77332.1| flagellar motor switch protein FliM [Phenylobacterium zucineum
           HLK1]
          Length = 358

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 102/269 (37%), Gaps = 6/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + S       ++   +   
Sbjct: 83  RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILSVFRAEELNNYGLLTVD 142

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R +  + A   +        S  
Sbjct: 143 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMVEVVLADAREAFEPLTPVSFT 202

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+               +      + + + +E+      L++P  TL  ++  L+     
Sbjct: 203 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 260

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +  N+ +   ++ ++ +L+ V+ LK+G  +       +   L
Sbjct: 261 EKFG-RDNIWESHLATELWTTNMEVRAVLDEQQVSLQKVLDLKVGDTLMLNATPDSLIEL 319

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
            A    +    +GR   +  +R+   ++ 
Sbjct: 320 RAGAIPLTRGRMGRRNHHIAVRVEAPLSP 348


>gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
           25196]
 gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
           25196]
          Length = 326

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 14/308 (4%)

Query: 2   RGQSI-HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
             QS  +    P +     R+    G   T+E I       + + L       M    ++
Sbjct: 25  SEQSTANPGFRPYNLATQERIVR--GRMPTLEII----NERFARLLRLGLFNFMRRSANV 78

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +    +  KFS  + +       +   +              LV  +++NL G     +P
Sbjct: 79  TAGPVRVMKFSEFVRNLAAPSNLNLVHIKPLRGTSLFVFDPTLVFLVVDNLFGGDGRFLP 138

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           +   R  +  E+++ +R +  +     +                     +       NE 
Sbjct: 139 KTEGRDFTQTEQRIIQRLLNLVFDSYGKSWHPVYPIEFEYLRAET--NTQFANVATPNEV 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQL 238
           V      +   +V     + +P   +L+     LSS  + E     +  +   +++    
Sbjct: 197 VVATTFEVNFGSVVGEMHICMPYS-ILEPIRDLLSSTLQGEALEVDKRWVGRLSKQVQSA 255

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V +   +   +  L  ++ +K+G VIP    E      S +G  +  C+ G     Y +
Sbjct: 256 EVTLLANLTHAQVRLDQILNMKVGDVIPLDIPE--FVTASVDGVPVMECKYGISNGRYAL 313

Query: 299 RITDRINF 306
           R+   +  
Sbjct: 314 RMEKMLAS 321


>gi|292493590|ref|YP_003529029.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4]
 gi|291582185|gb|ADE16642.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4]
          Length = 349

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 96/280 (34%), Gaps = 24/280 (8%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L +         +D++ +  Q  KFS  IH+       +   +S          
Sbjct: 61  ERFVRQLRRSLFNLFRRAIDVTVSGMQMVKFSEYIHTLFVPTSLNMVQMSPLQGTSLFVF 120

Query: 100 SNNLVITLLENLLGASH-----ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
              LV  +++N  G S       +  ++  R  +  E ++ +  + ++ A L Q      
Sbjct: 121 DPKLVFMMVDNYFGGSGRAYARRSYARIEGREFTPTEVRVVQLVLEKVFADLEQAWEPVL 180

Query: 155 ESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                       +YL+   N         +E V      +  +     F + +P   +L+
Sbjct: 181 AV--------HFEYLQAEPNPQFATIVSPSEVVVVSTFFVEFDGGGGEFHITLPYA-MLE 231

Query: 209 TTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                L    +S +    E        K  +  V +   +   + +L++++ L+ G ++P
Sbjct: 232 PIRELLEVGRQSGSSQVDERWDQALQEKILEAEVELSCTLAETQLSLREILALEPGDILP 291

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +     A+G  ++    G    NY +++ + +  
Sbjct: 292 IELP--SILTAQADGVPVFRARYGVHNDNYALKVVEPLPH 329


>gi|220924581|ref|YP_002499883.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS
           2060]
 gi|219949188|gb|ACL59580.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS
           2060]
          Length = 403

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 101/276 (36%), Gaps = 4/276 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V+++  +  S +F   +++     +        W ++  +   
Sbjct: 120 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPMPTLLGVFKADLWENSGLLTVD 179

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           ++L    L+ LLG     T  +L  R  +++E  L +R +  I   L             
Sbjct: 180 SSLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDLEASFQPLSPVRFQ 239

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218
           ++     +       R +N     I++ + +E       ++ P  T+     + L S   
Sbjct: 240 IDRIES-NPRFATITRPAN-AAILIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQSFMG 297

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +   +        A + +Q ++ ++  ++     L+ V++L++G  I F  +      L 
Sbjct: 298 EKLGRDHVWEGHLATEIWQADLAVEAVLHEMTLPLRRVLSLEVGDTIMFDAKPTDLITLR 357

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +    +GR+  +  +++T  +   + +   F
Sbjct: 358 CGDWALTQGRIGRLDDSIAVQVTRPLRRARTTFAAF 393


>gi|221235077|ref|YP_002517513.1| flagellar motor switch protein FliM [Caulobacter crescentus NA1000]
 gi|300680949|sp|B8GXB5|FLIM_CAUCN RecName: Full=Flagellar motor switch protein FliM
 gi|220964249|gb|ACL95605.1| flagellar motor switch protein fliM [Caulobacter crescentus NA1000]
          Length = 374

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/315 (13%), Positives = 110/315 (34%), Gaps = 20/315 (6%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54
           N   +  +L   L+G   D +T  +   +   +  + LP                 +   
Sbjct: 53  NQDEIDSLLGFDLSGDGSDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 112

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
             +V++S  +  S +F   ++S     + +        +   +   +NL+ ++++ LLG 
Sbjct: 113 SDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 172

Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
              T   ++  R  +T+E+ L +R I  +   L          S +L+            
Sbjct: 173 RRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVSFSLDRLETNPRFAAIA 232

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231
              +      + + + +E+      L++P  TL  ++  L+      K   +        
Sbjct: 233 RPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 289

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           A + +   + +   ++ ++  L  V+ +++G  +       +   L A    +    +GR
Sbjct: 290 ATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGR 349

Query: 292 VGKNYTIRITDRINF 306
              +  +R    +  
Sbjct: 350 RNHSIAVRAEAPLTP 364


>gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
 gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
          Length = 338

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 97/273 (35%), Gaps = 7/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++L       M  + +IS    +  K+S  I +       +               
Sbjct: 59  ERFARYLRIGLFNYMHRNAEISVGPIRVQKYSEFIRNLVVPTNLNLVIAKPLRGTALFVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++N+ G       ++  R  +  E+++ +  +  +    ++      + +  
Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIQGLLNVVFTEYSKSWKPVYDINFE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     +E V +    +      +   +  P   +L+     L S  +
Sbjct: 179 YIR-SEMNSQFANI-ATPSEIVVSTTFTLEFGGATADMHICFPYS-MLEPIRDLLYSTMQ 235

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+  +  +  I    ++     V I   +   K TL  ++ LK+G VIP    +K  A++
Sbjct: 236 SDQLSSDKRWIGTLRKQLQGAEVEIVALLGSGKITLGQILKLKVGDVIPLHIPDKIEALV 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +   +  C  G+    Y +++   I    ++
Sbjct: 296 --DSVPLMECTYGQQSGQYALKVDRFIASSPET 326


>gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
 gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688]
 gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
 gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688]
          Length = 334

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 96/270 (35%), Gaps = 7/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M   V++S    +  K+S  + +       +   ++       +  
Sbjct: 58  ERFARLLRIGLFNFMRRSVEVSVGPVRISKYSEFVRNLVVPTNLNLVHMNPLRGTGLMVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV ++++N+ G       ++  R  +  E+++ +R +A +     +      +    
Sbjct: 118 DPSLVFSIVDNMFGGDGRFHTRIEGRDFTQTEQRIIQRVLAIVIENYEKSWEPVYQVKFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     NE +     ++ +           P   +++     L+S  +
Sbjct: 178 YLR-SEMNTQFANI-ATPNEVIVATTFSIELGPAGGEIHFCFPYS-MIEPVRDLLTSSLQ 234

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E     +  +    ++     V +   +   +  L DV+ +K+G VIP    E   A +
Sbjct: 235 GEVLGVDKRWVRLMTQQIQAAEVELVANLAKARMQLGDVLNMKVGDVIPLNISETIEAHV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +   +  C+ G     Y++R+   +  +
Sbjct: 295 --DNVPVMECKYGVFNGQYSLRVEKLLRAN 322


>gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
 gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans]
 gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
          Length = 332

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 5/266 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    +  K+S  I +       +   +        I  
Sbjct: 58  ERFSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGIGLIVL 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  L++NL G       ++  R  +  E+++ +R +  I     +           
Sbjct: 118 DPNLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQN 218
                +++    N     NE V      + +  V+      +P   +     L++ S Q 
Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTSSMQG 235

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++    +  I    ++     V I   +   K TL D++ +KIG +I     E       
Sbjct: 236 ETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPE--QVTAE 293

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304
            +G  +  C  G++   Y +R+   I
Sbjct: 294 VDGVPVMECSYGKLNGQYALRVEKLI 319


>gi|295688787|ref|YP_003592480.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756]
 gi|295430690|gb|ADG09862.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756]
          Length = 369

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 95/269 (35%), Gaps = 6/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 94  RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 153

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R I  +   L          + +
Sbjct: 154 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVAFS 213

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+                      + + + +E+      L++P  TL  ++  L+     
Sbjct: 214 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 271

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   + +   ++ ++  L  V+ +++G  +       +   L
Sbjct: 272 EKFG-RDNIWEGHLATELWTTQMEVRAVLDEQQLPLSRVLNMQVGDTLMLNATPDSLVEL 330

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
            A    +    +GR   +  +R    +  
Sbjct: 331 RAGAIPLTRGRMGRRNHSIAVRAEAPLTP 359


>gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum
           JL354]
          Length = 339

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 6/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
               +      +      +++S     S +F   ++      + +   + +W     +  
Sbjct: 69  ERMVRSFATSMRNLTSDAIEVSLDDIASVRFGDFMNRVPLPCMIAVFKVPAWQDYGLVTI 128

Query: 100 SNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
             NL+  +++ LLG        ++  R+ +T+E  L  + I  +    +         + 
Sbjct: 129 EANLIYAVVDALLGGRKGAAPRKIEGRAFTTIETTLVSKMIELVLREFSTAFEPIAPITM 188

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
            LE               +    +     + ++    +F +++P  T L+     LS + 
Sbjct: 189 ELERIETSPRFAAIAGPTN--VASAATFAVDMDGRGGNFTILLPFAT-LEPVRGKLSQRF 245

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
             E    D    D    +  +  V I T +  ++  L DV +L+IGQ IPF         
Sbjct: 246 MGEKLGGDNTWRDHMRNEILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFE 305

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +   G  +   ++GR   +  I I D I   Q
Sbjct: 306 VCCGGVPLARAQIGRQRNHVAIGIVDTIKQGQ 337


>gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp.
           Marseille]
 gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp.
           Marseille]
          Length = 332

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 91/266 (34%), Gaps = 5/266 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    +  K+S  I +       +   +        I  
Sbjct: 58  ERFSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGTGLIVL 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  L++NL G       ++  R  +  E+++ +R +  I     +           
Sbjct: 118 DPNLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQN 218
                +++    N     NE V      + +  V+       P   +     L++ S Q 
Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTSSMQG 235

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++    +  I    ++     V I   +   K TL D++ ++ G +IP    +   A + 
Sbjct: 236 ETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTITAEV- 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304
            +   +  C  G++   Y +R+   I
Sbjct: 295 -DSVPVMECSYGKLNGQYALRVEKLI 319


>gi|34498585|ref|NP_902800.1| flagellar motor switch protein FliM [Chromobacterium violaceum ATCC
           12472]
 gi|34104439|gb|AAQ60797.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
          Length = 334

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 95/274 (34%), Gaps = 7/274 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +  + +IS    +  K+S  I +       +   +        +  
Sbjct: 58  ERFARNLRIGLFNFLRRNAEISVGPVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  +++NL G+      ++  R  +  E+++  R +  +     +           
Sbjct: 118 DPDLVFLIVDNLFGSDGRYHVRVEGRDFTPTEQRIIHRLLEVVFTECQKAWEPVYPIEFV 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N      E V  +  ++ +      F + +P   +++     LSS  +
Sbjct: 178 YLR-SEMNTQFANI-ATPTEVVVAMTFHIELGAGGGDFHICLPYS-MVEPIRDLLSSTMQ 234

Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++        ++    +     V +   +   K TL  ++ LK G V+     E+  A +
Sbjct: 235 ADRTEVDNRWVNLMTHQVQAAEVELVASLAHAKVTLGQILNLKNGDVVMIEIPERVEADV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           S  G  ++    G V   Y +++   +    + L
Sbjct: 295 S--GIPVFEASYGTVQGRYALKVEKILAGTNEFL 326


>gi|23009967|ref|ZP_00050822.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 316

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 96/274 (35%), Gaps = 6/274 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V+++  +  S +F   +++     +        W  +  +   
Sbjct: 33  RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADPWEGSGIVTVE 92

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             L  + ++ LLG     +  +L  R  +T+E  L +R I  I + L             
Sbjct: 93  QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMNLVRRLIDIILSDLELSFQPLSPVRFG 152

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++           T          I++ + ++       ++ P  T+  ++  L+     
Sbjct: 153 IDRLETNPRFATIT--RPGNAAILISLKLDMDGRGGGMQILFPYATVESIRDLLMQSFMG 210

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +   + +      A + +Q ++ ++  ++     LK V+ LK+G  + F  +      +
Sbjct: 211 ER-LGRDQVWESHLATEIWQADLEMEAVLHEVTLPLKRVLGLKVGDTLMFDRKPTDLITV 269

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                 +    +GR+     ++I   +   + +L
Sbjct: 270 RCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTL 303


>gi|167645399|ref|YP_001683062.1| flagellar motor switch protein FliM [Caulobacter sp. K31]
 gi|167347829|gb|ABZ70564.1| flagellar motor switch protein FliM [Caulobacter sp. K31]
          Length = 377

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 108/313 (34%), Gaps = 20/313 (6%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54
           N   +  +L   ++G   D +T  +   +   +  + LP                 +   
Sbjct: 56  NQDEIDSLLGFDMSGDGNDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 115

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
             +V++S  +  S +F   ++S     + +        +   +   +NL+ ++++ LLG 
Sbjct: 116 SDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 175

Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
              T   ++  R  +T+E+ L +R +  +              S  L+            
Sbjct: 176 RRGTAAMRIEGRPYTTIERVLVQRMVEVVLHDAKAAFEPLHPVSFTLDRLETNPRFAAIA 235

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231
              +      + + + +E+      L++P  TL  ++  L+      K   +        
Sbjct: 236 RPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 292

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           A + +   + +   ++ ++  L  V+ LK+G  +       +   L A    +    +GR
Sbjct: 293 ATELWTTQMEVRAVLDEQQLPLSRVLDLKVGDTLMLNATTDSLVELRAGSIPLTRGRMGR 352

Query: 292 VGKNYTIRITDRI 304
              +  +R    +
Sbjct: 353 RNHSIAVRAEAPL 365


>gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 269

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 26/243 (10%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P+  ++  RL     D       SS+                       S     SG
Sbjct: 51  DRLPMLHVVFDRLATACSDAAKHLAASSTF---------------------YSLNGIASG 89

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F   + ++  N V        W  +  +G   + + T++E L G+     P    R+ S
Sbjct: 90  RFGEFLDAYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPPVEDERNFS 149

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E ++A+    Q+   L        ++   LE   +         R SN+ V      +
Sbjct: 150 AIELRIAQMVFEQVGKALESSFGLVSQTPFRLER-METRMEFAVIGRRSNKAVQA-KFLL 207

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
              N      L+IPQ T+L     +LS     E+ + D    +  A +  + NV +   +
Sbjct: 208 QALNRGGEMFLVIPQ-TVLNPLRPALSKVLTGESAARDPHWAEQIAAEVQKTNVRLKAVL 266

Query: 247 NLK 249
             +
Sbjct: 267 EER 269


>gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
 gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
          Length = 336

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 89/254 (35%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           M  + +IS    +  K+S  I +       +   +             NL+  +++NL G
Sbjct: 74  MRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFG 133

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +  +     +                         
Sbjct: 134 GDGRFHMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRMEMHTEFA--N 191

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V T + ++ + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 192 VATPNEVVITTSFSIELGSNGGDVHICMPY-TMIEPIRDRLTSAIQGEALEVDKRWLRLL 250

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +   K  + D++ +K+G VIP       C     +G  +  C  G 
Sbjct: 251 SQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPLEL--DDCVTAKVDGVPVMECNYGT 308

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 309 FNGQYALRVNRMLN 322


>gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
 gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
 gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
 gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
          Length = 335

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 86/254 (33%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           M  + +IS    +  K+S  I +       +   +             NL+  +++NL G
Sbjct: 73  MRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +  +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTDVEQRIIQRMLQLVFEHYARAWQPVYPIDFEFLRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V T   ++ + N      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVTTTFSLELGNNGGDVHICMPY-TMIEPIRDRLTSAIQGEALEVDKRWLRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G VIP             +G  +  C  G 
Sbjct: 250 SQQVQTAEVELIADLATANVQVSDILNMKVGDVIPLEL--DDVVTAKVDGVPVMECNYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|83858803|ref|ZP_00952325.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853626|gb|EAP91478.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 385

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 100/269 (37%), Gaps = 6/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 110 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAKQLDNYGLLTVD 169

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R I  + A   Q  +   E   +
Sbjct: 170 SNLIYSIVDVLLGGRRGTSAMRVEGRPYTTIERTLVQRMIEVVLADARQAFAPLTEVDFD 229

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+               +      + + + +E+      L++P  TL  ++  L+     
Sbjct: 230 LDRVETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 287

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K   +        A + +   + +   ++  +  L +V+ LK+G  +           L
Sbjct: 288 EKFG-RDNIWESHLATELWSTKMEVSAVLDEMQKPLGEVMQLKVGDTLMLDAGPDGLIEL 346

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +    +GR+G N  +R+   ++ 
Sbjct: 347 RCGTVPLAHGHMGRIGHNIGVRLDRPLSA 375


>gi|207728361|ref|YP_002256755.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2]
 gi|206591607|emb|CAQ57219.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2]
          Length = 335

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +  + +IS    +  K+S  I +       +   +             NL+  ++++L G
Sbjct: 73  LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +A +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V +   +M + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G VIP             +G  +  C  G 
Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVIPLEL--DDSVTARVDGVPVMECAYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|224826626|ref|ZP_03699727.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002]
 gi|224601227|gb|EEG07409.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002]
          Length = 335

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 94/264 (35%), Gaps = 7/264 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +  + +IS    +  K+S  I +       +   +        +  
Sbjct: 58  ERFARNLRIGLFNFIRRNAEISVGPVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  +++NL G+      ++  R  +  E+++ +R +  +     +           
Sbjct: 118 DPDLVFLVVDNLFGSDGRYHVRVEGRDFTPTEQRIIRRLLEVVFTEYQKAWEPVYPIEFV 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N      E V  +  ++ +      F + +P   +++     LSS  +
Sbjct: 178 YLR-SEMNTQFANI-ATPTEVVVAMTFHIEMGAGGGEFHVCLPYS-MVEPIRDVLSSTMQ 234

Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++        +   +R+     V++   +     TL  V+ LK G V+     E   A +
Sbjct: 235 ADRTEVDNRWVSLMSRQVQAAEVDLVATLAGTSVTLGQVLNLKQGDVVTLEIPEMIIADV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRIT 301
           S  G  +  C  G V  +Y +++ 
Sbjct: 295 S--GIPVVECTYGTVQGHYALKVE 316


>gi|300113610|ref|YP_003760185.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113]
 gi|299539547|gb|ADJ27864.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113]
          Length = 336

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 99/299 (33%), Gaps = 23/299 (7%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKE 79
               +  I +    L  +  +   + F+  +        +++    Q  KFS  +H+   
Sbjct: 41  DFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQVLKFSEYLHTLFM 100

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
               +   +              LV  L++   G S E   +L NR  +  E  + +  +
Sbjct: 101 PTSLNLVQIHPLRGAGLFVFDPKLVFMLVDRYFGGSGEFYNRLENREFTPTEMHIIQLVL 160

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENV 193
            +    L Q                + +YL+   N         +E V     ++  E  
Sbjct: 161 ERTFTDLKQAWEPVL--------AINFEYLQTEFNPRLATIASPSEIVVVSTFHVEFEGG 212

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKT 251
              F + +P  TLL+     L +  K +    D        +      V +   +   + 
Sbjct: 213 GGEFHIALPY-TLLEPVRELLDTGKKDDFTQADGGWNQALRKNVSDAEVELSCTLTEIRL 271

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +LK+V+ LK G ++P      +     A+G  ++    G    +  +++ +R+   +  
Sbjct: 272 SLKEVLALKSGDILPIELP--STVTALADGVPVFRVRYGIHNSSRALKVVERLLSPESF 328


>gi|329849711|ref|ZP_08264557.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum
           C19]
 gi|328841622|gb|EGF91192.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum
           C19]
          Length = 388

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 102/281 (36%), Gaps = 6/281 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    +     +V++S  +  S +F   ++S     + +        +   +   
Sbjct: 111 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 170

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L +R +  +     Q        + N
Sbjct: 171 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDARQAFEPLTAVNFN 230

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L+                      + + + +E+      L++P  T L+     L  Q  
Sbjct: 231 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRIELLLPYAT-LEPIRKMLLLQFM 287

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E    D       A + +   + +   ++ ++  L  V+ LK+G+ I    +  +   L
Sbjct: 288 GEKFGRDNIWESHLATELWTTQMEVRAVLDEQQVPLSRVLNLKVGETIVLNAQADSPVQL 347

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318
                 + +  +GR G +  +R+   +    K     + K+
Sbjct: 348 RCGQIPLTTGRMGRKGHSIAVRVDTPLALSTKRRLTQMKKK 388


>gi|300696948|ref|YP_003747609.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum CFBP2957]
 gi|299073672|emb|CBJ53192.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum CFBP2957]
          Length = 335

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +  + +IS    +  K+S  I +       +   +             NL+  ++++L G
Sbjct: 73  LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +A +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V +   +M + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G VIP             +G  +  C  G 
Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVIPLEL--DDFVTARVDGVPVMECAYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
 gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
          Length = 403

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 4/276 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V+++  +  S +F   +++     +        W ++  +   
Sbjct: 120 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADLWENSGLVTVD 179

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL    L+ LLG     T  +L  R  +++E  L +R +  I   L             
Sbjct: 180 SNLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDLEASFQPLSPVRFQ 239

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218
           ++     +       R +N     I++ + +E       ++ P  T+     + L S   
Sbjct: 240 IDRLES-NPRFATITRPAN-AAILIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQSFMG 297

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +   +        A + +Q  V ++  ++     LK V+ L++G  I F  +      L 
Sbjct: 298 EKLGRDHVWEGHLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTILFDAKPTDLITLR 357

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                +    +GR+  +  +++T  +   + +   F
Sbjct: 358 CGDWALSQGRIGRLEDSIAVQVTRPLRRARTTFAAF 393


>gi|77165630|ref|YP_344155.1| flagellar motor switch protein FliM [Nitrosococcus oceani ATCC
           19707]
 gi|254434449|ref|ZP_05047957.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27]
 gi|76883944|gb|ABA58625.1| Flagellar motor switch protein FliM [Nitrosococcus oceani ATCC
           19707]
 gi|207090782|gb|EDZ68053.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27]
          Length = 336

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 102/305 (33%), Gaps = 22/305 (7%)

Query: 23  GKLGDKKTIE--------KISSSL-------GYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
             LGD+KTI         +I+ +           + +         +    +++    Q 
Sbjct: 29  RVLGDEKTIRPYDFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQV 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            KFS  +H+       +   +              LV  L+E   G S +   +L NR  
Sbjct: 89  LKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENREF 148

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E  + +  + +  A L Q        +           L    +  S+E V     +
Sbjct: 149 TPTEVHIIQLVLERTFADLKQAWEPVLAVNFEYLQTELNPRLATIAS--SSEMVVVSTFH 206

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245
           +  E     F + +P  TLL+     L++  K +    D        +      V +   
Sbjct: 207 VEFEGGGGEFHIALPY-TLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCT 265

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   + +L +++ LK G ++P      +     A+G  ++    G    +  +++ +R+ 
Sbjct: 266 LTEIQLSLGEILALKSGDILPIELP--STVTALADGIPVFRVRYGIHHGSRALKVVERLL 323

Query: 306 FDQKS 310
             +  
Sbjct: 324 SPESF 328


>gi|300693352|ref|YP_003749325.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum PSI07]
 gi|299075389|emb|CBJ34684.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum PSI07]
          Length = 335

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 87/254 (34%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +  + +IS    +  K+S  I +       +   +             NL+  ++++L G
Sbjct: 73  LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +  +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFDHYGKAWQPIYPIEFEALRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V + + +M + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVSTSFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G VIP             +G  +  C  G 
Sbjct: 250 SQQVQTAEVELVAHLANANVQVSDILNMKVGDVIPLEL--DDSVTAKVDGVPVMECAYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|325981184|ref|YP_004293586.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212]
 gi|325530703|gb|ADZ25424.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212]
          Length = 325

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 7/271 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M   VDI+    +  KFS  + +       +   +           
Sbjct: 58  ERFARLLRIGLFNFMRRTVDIAVGPVKVIKFSEFVRNLVVPTNLNMVHMKPLRGTALFVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              L+  +++NL G       ++  R  +  E+++ +R +  +     +   +       
Sbjct: 118 DPELIFLIVDNLFGGDGRYHTRVEGRDFTQTEQRIIQRLLGVVFDEYEKSWKSVYPIQFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                             NE V  +  ++ + N      + IP   +++    +L S  +
Sbjct: 178 YVRSEMNPQFATI--ATPNEVVVCVTFDIDMGNKGGGLHVCIPYS-MVEPIRDTLYSALQ 234

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +     +  I   +++     V +   +   K T + +++++ G +IP    +     +
Sbjct: 235 GDHLEVDKRWIKLLSQQVQGAEVELVANLGGAKVTFEQILSMQSGDIIPLEIPKSISVCV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +G  +  C  G +  +Y +R+   I+  +
Sbjct: 295 --DGVPVMDCRYGTMNGHYALRVNSMISRSE 323


>gi|17548599|ref|NP_521939.1| flagellar motor switch protein FliM [Ralstonia solanacearum
           GMI1000]
 gi|17430847|emb|CAD17529.1| probable flagellar motor switch protein flim [Ralstonia
           solanacearum GMI1000]
          Length = 335

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +  + +IS    +  K+S  I +       +   +             NL+  ++++L G
Sbjct: 73  LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +  +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V +   +M + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G V+P             +G  +  C  G 
Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL--DDSVTARVDGVPVMECAYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|257095345|ref|YP_003168986.1| flagellar motor switch protein FliM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047869|gb|ACV37057.1| flagellar motor switch protein FliM [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 334

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 96/272 (35%), Gaps = 7/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++L       M    +IS  S +  K+S    +       +  +            
Sbjct: 59  ERFARYLRIGLFNYMHRSTEISVGSIRVQKYSEFTRNLVVPTNLNLINAKPLRGTALFVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  +++N+ G       ++  R  +  E+++ K  +  +    ++      + +  
Sbjct: 119 DPSLVFLVVDNMFGGDGRFHTRVEGRDFTATEQRIIKGLLGVVFTEYSRSWKPVYDLTFE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     +E V     ++      +   +  P   +++     L S  +
Sbjct: 179 YVR-SEMNSQFANI-ATPSEIVVATTFSIEFGGSTADLHICFPYS-MIEPIRDLLFSTMQ 235

Query: 220 SENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+  S D        ++     V I  R+     +L+ ++ +K+G ++P    EK   I 
Sbjct: 236 SDQLSTDRRWVIMLRKQLTNAEVEITARLATATVSLRQILEMKVGDIVPIDIPEK--VIA 293

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +   +  C  G+ G  Y I+I   +  + +
Sbjct: 294 QVDDVPLMECRYGQQGGQYAIKIDHFMTIENQ 325


>gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
           KT]
 gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
           KT]
          Length = 335

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 97/270 (35%), Gaps = 7/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    +  K+S  I +       +   +        +  
Sbjct: 58  ERFARLLRIGLFNFLRRTTEVSVGPVKISKYSEFIRNLVVPTNLNLVQMKPLRGTALMVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  +++NL G       ++  R  +  E+++ +R +A +     +      +    
Sbjct: 118 DPTLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRVLAIVFETYAKSWEPVYKLEFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--Q 217
                +++    N     NE V +   N+ + + +       P   +++     L+S  Q
Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVSTTFNIELGSASGEIHFCFPYS-MIEPIRDLLTSPLQ 234

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            ++    +  +    ++     V +   +   + TL D++ +K+G VIP    E+  A +
Sbjct: 235 GEALGVDKRWVRLMTQQIQSAEVMLIADLAKAEMTLGDILNMKVGDVIPLSISEEIEAKV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +   +  C+ G     Y +R+   +  +
Sbjct: 295 --DNVPVMQCKYGVFNGQYALRVEKLLRSN 322


>gi|83747640|ref|ZP_00944676.1| FliM [Ralstonia solanacearum UW551]
 gi|207739721|ref|YP_002258114.1| flagellar motor switch protein flim [Ralstonia solanacearum
           IPO1609]
 gi|9438185|gb|AAF87587.1|AF283286_1 flagellar motor switch [Ralstonia solanacearum]
 gi|83725692|gb|EAP72834.1| FliM [Ralstonia solanacearum UW551]
 gi|206593103|emb|CAQ60009.1| flagellar motor switch protein flim [Ralstonia solanacearum
           IPO1609]
          Length = 335

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 87/254 (34%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +  + +IS    +  K+S  I +       +   +             NL+  ++++L G
Sbjct: 73  LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +A +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V +   +M + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G V+P             +G  +  C  G 
Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPLEL--DDFVTARVDGVPVMECAYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|288942630|ref|YP_003444870.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM
           180]
 gi|288898002|gb|ADC63838.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM
           180]
          Length = 325

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 91/270 (33%), Gaps = 9/270 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++L       +    +IS    +  KFS  +HS       +   +           
Sbjct: 62  ERFARYLRVHLFNLLRRSSEISVIGARVTKFSEYLHSLYVPTSLNLVRVYPLHGTALFVF 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  + +E ++ K  +    + + +           
Sbjct: 122 DPKLVFGLVDNFFGGDGRYYSRIEGRDFTPMEMRVIKNLLDASFSDMQKAWEPVMHLDF- 180

Query: 160 LEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
             +F + +   +  N     E V   + ++ +E    +  +  P   +++     L +  
Sbjct: 181 --EFINAEVNPQFANIVSPTEIVVINDFHIELEGGGGNMHVTFPYS-MIEPIREVLDTGL 237

Query: 219 KSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+     +        +     V I + +     T++ ++ +K G +IP    E    +
Sbjct: 238 QSDRSGVDQRWQRALEEEIPLAKVEISSVLTEVTLTVEQLLEVKPGDIIPVDLPE--TIV 295

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
           L+     ++  + G       I+I + I  
Sbjct: 296 LNVEDIPLFRGKFGVSNGINAIKIMEHIKH 325


>gi|186477685|ref|YP_001859155.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815]
 gi|184194144|gb|ACC72109.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815]
          Length = 332

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 89/272 (32%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRTAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +  S   
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIIHKLLNLVFEHYTAAWKSVRPLSFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 TRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T ++++ +K G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQIPVTFQEILNMKAGDVLPINIPEHITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+  ++ 
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAAEQM 326


>gi|299068765|emb|CBJ40005.1| flagellar motor switching and energizing component [Ralstonia
           solanacearum CMR15]
          Length = 335

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 7/254 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +  + +IS    +  K+S  I +       +   +             NL+  ++++L G
Sbjct: 73  LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  + VE+++ +R +  +     +                         
Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231
               NE V +   +M + +      + +P  T+++     L+S  + E     +  +   
Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +++     V +   +      + D++ +K+G V+P             +G  +  C  G 
Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL--DDAVTARVDGVPVMECAYGT 307

Query: 292 VGKNYTIRITDRIN 305
               Y +R+   +N
Sbjct: 308 FNGQYALRVNRMLN 321


>gi|261855321|ref|YP_003262604.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus
           c2]
 gi|261835790|gb|ACX95557.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus
           c2]
          Length = 347

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 8/274 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + +         +   VDIS    +  K+S   H+       +   +         
Sbjct: 58  LNERFARNFRIRLVSMLRRTVDISIEGVRMMKYSEYSHALYVPTSLTLVHVRPLKGTGLF 117

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              + LV  L++N  G       ++  R  +  E ++  R + Q    + +  +     +
Sbjct: 118 MMESQLVFKLVDNFFGGFG-MHAKIEGRDFTPTELRVITRVLEQAIDEVQRSWTPVYPVN 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
                 ++++    N      E V   +  + +E     F +++P   +++     L   
Sbjct: 177 IQTVS-HEMNPQLANI-VSGTEVVVVNSFRIEVEGGGGKFDIVLPYS-MIEPIRDLLDGG 233

Query: 218 NKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            + +     E       R+  + ++ +  ++   + +L D+  +++G V+PF   E    
Sbjct: 234 MQGDRLEVDERWTQALKRELGRADIELVAQLGEMRMSLADIAHMEVGDVLPFEMPE--QV 291

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +L+A G  +Y  +LG    N ++RI   +    +
Sbjct: 292 VLTAQGLPLYQGKLGVHRGNKSVRIQSPVKERLE 325


>gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
           5305]
 gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
           5305]
          Length = 368

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 102/294 (34%), Gaps = 11/294 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +  + +       +   L  + +      +++   S     +   + S +    F+   
Sbjct: 58  MRAFQALHEGFSREFGASLSGMLRSI----IEVKLISVDQLTYGEFVFSLENPTCFNLLF 113

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
               + +  +  + +++  +++ LLG    +     +R L+ +E +L  R        L 
Sbjct: 114 SDKLNGHLILDLNPSIIYPIVDRLLGGGKSSTQSYPSRPLTEIELRLVSRITKSAITALE 173

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
                  E    +        L +      NE +  I+  +++  +     L IP  T +
Sbjct: 174 NSWINISELQLRVTQIESNPQLVQIV--PPNEVIVLISFEISMGEMRGIMNLCIPFNT-I 230

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +     LSS   S    + +      +         VN+   +     T  +++ L +G 
Sbjct: 231 EPLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELMNLDVGD 290

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           VI      K    +   GK  +S ++G++  +  I+I D++   +  +   L K
Sbjct: 291 VILTERDVKKGLTIFVEGKPTFSADVGQIKGHKAIQIRDKLPKTRDIVDQHLQK 344


>gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
 gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
          Length = 337

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 4/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    DI+  S +  KF     +       +   +           
Sbjct: 63  ERFARSLRTALFNFIRRGADITVGSVRIEKFGDFARNLPMPTNLNLVHMKPLRGTALFVY 122

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++NL G       ++  R  +  E+++ +R +            T       
Sbjct: 123 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLEMTLTSYGNAWRTVYPIETE 182

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                             NE V T   ++ +  V     + +P   +     + ++    
Sbjct: 183 YVRSEMHTKFANVATV--NEAVITTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 240

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +   +  +   + +    +V +       ++T+ +V+ L+ G V+P    E        
Sbjct: 241 EKEVDKSWLAKLSTQLRAADVEVVAEFTHVQSTVAEVLALRAGDVLPIELPEH--VFGKV 298

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           NG  +  C  G +   Y +R+   IN   
Sbjct: 299 NGVPVMQCGFGTINGQYALRVERMINHQD 327


>gi|188592199|ref|YP_001796797.1| flim: flagellar motor switching and energizing component
           [Cupriavidus taiwanensis LMG 19424]
 gi|170938573|emb|CAP63560.1| FliM: flagellar motor switching and energizing component
           [Cupriavidus taiwanensis LMG 19424]
          Length = 339

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 84/269 (31%), Gaps = 4/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    DIS  S +  KF     +       +   L           
Sbjct: 62  ERFARSLRTALFNFIRRGADISVGSVRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVY 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++NL G       ++  R  +  E+++ +R +            T       
Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLTSYGNAWRTVHPIETE 181

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                             NE V T   ++ +  V     + +P   +     + ++    
Sbjct: 182 YIRSEMHPKFANV--ATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 239

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +   +  +   + +     V +       ++T+ +V+ ++ G V+P    EK       
Sbjct: 240 EKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEK--VFGKV 297

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +G  +  C  G +   Y +R+   IN   
Sbjct: 298 DGVPVMQCGFGTMNGQYALRVERMINHQD 326


>gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
           ES-2]
 gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
           ES-2]
          Length = 329

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 95/271 (35%), Gaps = 7/271 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    +IS    +  KF   + +       +         N     
Sbjct: 59  ERFARLFRIGLFNFIRRTPEISVGPVRVLKFGEFVRNLAVPTNLNIIQPKPLRGNGLFIF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++N+ G       ++  R  +  E+++ ++ +A +     +   T       
Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGREFTQTEQRIIQKMLAVVFETYAKAWETVYPLEFE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     NE V     ++ +     +F + +P  T L+     L +  +
Sbjct: 179 FVR-SEMNPQFANI-ATPNEVVIVTTFDIELGGNGGAFHICMPYST-LEPVKDLLFNNIQ 235

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E     +  +   +R+     + +   +     TL+ V+ +++G VIP    E   A  
Sbjct: 236 GEHLAVDKRWLQLLSRQVQCAEIELAATLGQANITLERVLKMRVGDVIPLNVDENITA-- 293

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           S +G  I  C+ G     Y ++I   +  ++
Sbjct: 294 SIDGVPIMECKYGVFNNQYALKIVKMLTTNE 324


>gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 333

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 5/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    ++S    +  K+S  I +       +   +        +  
Sbjct: 58  ERFARLLRIGLFNFLRRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++NL G       ++  R  +  E+++ +R +A +     +           
Sbjct: 118 DPNLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFENYAKSWEPVYPVEFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
                +++    N     NE V      + +  V+      IP  T+     I  SS Q 
Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTSSLQG 235

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++    +  I    ++     V I     + ++    ++ +K+G +IP    +   A + 
Sbjct: 236 ETLEVDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVLAKV- 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +G  +  C  G+    Y +R+   +   
Sbjct: 295 -DGVPVMECTYGKFNGQYALRVEKLLAQS 322


>gi|53723902|ref|YP_104282.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           23344]
 gi|67641904|ref|ZP_00440669.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse
           4]
 gi|121600665|ref|YP_994775.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1]
 gi|124385588|ref|YP_001027842.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10229]
 gi|126451066|ref|YP_001082210.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10247]
 gi|167000456|ref|ZP_02266270.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20]
 gi|254174753|ref|ZP_04881414.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           10399]
 gi|254201359|ref|ZP_04907723.1| flagellar motor switch protein FliM [Burkholderia mallei FMH]
 gi|254206701|ref|ZP_04913052.1| flagellar motor switch protein FliM [Burkholderia mallei JHU]
 gi|254357364|ref|ZP_04973638.1| flagellar motor switch protein FliM [Burkholderia mallei
           2002721280]
 gi|52427325|gb|AAU47918.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           23344]
 gi|121229475|gb|ABM51993.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1]
 gi|124293608|gb|ABN02877.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10229]
 gi|126243936|gb|ABO07029.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
           10247]
 gi|147747253|gb|EDK54329.1| flagellar motor switch protein FliM [Burkholderia mallei FMH]
 gi|147752243|gb|EDK59309.1| flagellar motor switch protein FliM [Burkholderia mallei JHU]
 gi|148026428|gb|EDK84513.1| flagellar motor switch protein FliM [Burkholderia mallei
           2002721280]
 gi|160695798|gb|EDP85768.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
           10399]
 gi|238522917|gb|EEP86359.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse
           4]
 gi|243063644|gb|EES45830.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20]
          Length = 332

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIATQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326


>gi|94314217|ref|YP_587426.1| flagellar motor switch protein FliM [Cupriavidus metallidurans
           CH34]
 gi|93358069|gb|ABF12157.1| flagellar motor switch protein FliM [Cupriavidus metallidurans
           CH34]
          Length = 336

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 88/269 (32%), Gaps = 4/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    DIS  + +  K+   + +       +   +           
Sbjct: 62  ERFARALRTALFNFIRRGADISVGTVRIEKYGDFVRNLPVPTNLNLVHMKPLRGTALFVY 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++NL G       ++  R  +  E+++ +R +    +   Q   T      +
Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIRRMLDLTLSSYGQAWRTVHPIEFD 181

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                             N+ V T   ++ +  V     + IP   +     + ++    
Sbjct: 182 YVRSEMHTKFANVAG--PNDAVVTTAFHIELGAVGGQLHICIPFSMIEPLRDLLMNPLQD 239

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                +  +   + +     V +       ++T+ +V+ ++ G V+P    E     +  
Sbjct: 240 EVEVDKRWLGQLSNQLRAAEVELVAEFTHLRSTVAEVLAMREGDVLPIELPEHIFGKV-- 297

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           NG  +  C  G +   Y +R+   +N+  
Sbjct: 298 NGVPVMQCGFGTMNGQYALRVERMLNYQD 326


>gi|167834865|ref|ZP_02461748.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           MSMB43]
          Length = 332

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +  +   
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLAFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLDIAESISAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
 gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
          Length = 315

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 94/268 (35%), Gaps = 7/268 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
            L    +P   K    +  +I  TS +   +   + S +   + + A+   W S      
Sbjct: 36  RLLLALVPD-LKSYCTIAPEIELTSLEYMPYEDAMESIQSPSLIAIANAEGWGSQIACVV 94

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +L+ ++LE +LG    T  +   R L+ +E+KL +R        L QC+        +
Sbjct: 95  EPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLGRRLAELSLKGLAQCLQDVSPVQFD 154

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++        +             + M+M  E+ +    L++P  TL  +   L      
Sbjct: 155 IQSLES--NPRSVMLAAPRTATVLVRMHMQFEDRSGHMALVLPYGTLDEVSAQLAQPFLG 212

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +S   S    D    +     V I   +      L +V+  K GQVI       T  + 
Sbjct: 213 GRSPTDSNARKD-MNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVG 271

Query: 278 SANGKEIYSCELGR-VGKNYTIRITDRI 304
             N + ++    G+       +R+   +
Sbjct: 272 MVNAQPMFQAAFGQRSNGALALRVIQSL 299


>gi|163856451|ref|YP_001630749.1| flagellar motor switch protein FliM [Bordetella petrii DSM 12804]
 gi|163260179|emb|CAP42481.1| flagellar motor switch protein FliM [Bordetella petrii]
          Length = 335

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 92/273 (33%), Gaps = 6/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L  +    M  + DI+  S +  K++    +       +   +           
Sbjct: 60  ERFARQLRHLLLNFMRRNADITVGSIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  ++++L G       ++  R  +T E+++ +R +        +           
Sbjct: 120 DPSLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWEAVYPIEFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217
                        T   +NE V   + ++          + +P   +      L     +
Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              E   +      +R+    +V++        +++++++ LK+G V+P    E    I 
Sbjct: 238 TTLEEVDQRWTHQLSRQVRSADVDLTAEFASIPSSIRELLRLKVGDVLPIEVPE--TVIA 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + NG  +  C  G     Y +R+ +   ++  +
Sbjct: 296 NVNGVPLMECSYGVFNGQYALRVQNLFTYESDT 328


>gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis
           KC583]
 gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis
           KC583]
          Length = 323

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 106/265 (40%), Gaps = 5/265 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
             L+  I   S  + K   I  +   + +    S   W ++      + LV  + E   G
Sbjct: 61  TPLEFTIDVVSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFG 120

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           A+   I     R  S  E  +++     ++  ++    T  +S                T
Sbjct: 121 ATEPKIINRNGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQEFNTET 180

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231
              S  F  +  +++      +   +++P+    +    +++   ++  +  D       
Sbjct: 181 FHQSQMF--SCTLSIKCGEAEAHLNILMPRSCH-RPIHEAITRALRAPEKRMDPLWTKRL 237

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            ++  Q +V I+  +     TL +++ LK+GQV+P          L +  K +Y C LG+
Sbjct: 238 RKEVSQAHVQIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGK 297

Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316
           +GKN++IR+TD I+ +++ +   +H
Sbjct: 298 IGKNFSIRVTDPIDEEKEMINELVH 322


>gi|53717666|ref|YP_106652.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           K96243]
 gi|76811753|ref|YP_331656.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710b]
 gi|126441392|ref|YP_001057084.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668]
 gi|126453439|ref|YP_001064314.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106a]
 gi|134281495|ref|ZP_01768203.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305]
 gi|167717395|ref|ZP_02400631.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           DM98]
 gi|167736438|ref|ZP_02409212.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 14]
 gi|167813512|ref|ZP_02445192.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 91]
 gi|167822054|ref|ZP_02453525.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 9]
 gi|167843667|ref|ZP_02469175.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           B7210]
 gi|167892138|ref|ZP_02479540.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           7894]
 gi|167900650|ref|ZP_02487855.1| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC
           13177]
 gi|167908870|ref|ZP_02495961.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 112]
 gi|167916909|ref|ZP_02504000.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           BCC215]
 gi|217424100|ref|ZP_03455600.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576]
 gi|226193119|ref|ZP_03788729.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814422|ref|YP_002898873.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           MSHR346]
 gi|242315986|ref|ZP_04815002.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106b]
 gi|254184092|ref|ZP_04890683.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1655]
 gi|254186558|ref|ZP_04893075.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194648|ref|ZP_04901079.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13]
 gi|254258129|ref|ZP_04949183.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710a]
 gi|254298640|ref|ZP_04966091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           406e]
 gi|52208080|emb|CAH34010.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           K96243]
 gi|76581206|gb|ABA50681.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710b]
 gi|126220885|gb|ABN84391.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668]
 gi|126227081|gb|ABN90621.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106a]
 gi|134247162|gb|EBA47248.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305]
 gi|157808681|gb|EDO85851.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           406e]
 gi|157934243|gb|EDO89913.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651398|gb|EDS84091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13]
 gi|184214624|gb|EDU11667.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1655]
 gi|217393163|gb|EEC33185.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576]
 gi|225934719|gb|EEH30696.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504112|gb|ACQ96430.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           MSHR346]
 gi|242139225|gb|EES25627.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1106b]
 gi|254216818|gb|EET06202.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
           1710a]
          Length = 332

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326


>gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
           2075]
 gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
           2075]
          Length = 328

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 89/272 (32%), Gaps = 5/272 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   VD++ TS    KF   + S           +     +      
Sbjct: 60  RFARLFRTTLSSALRKIVDMTTTSVDMVKFGEFMRSLPVPTSLHIFKMDPLRGHAIFVLE 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+E   G +     ++  R  + +E++L ++ +      +        E +   
Sbjct: 120 SKLVFNLVETFFGGAGGGNVKIEGRDFTAIEQQLTRKVVMLALKDMESAWKPVHEVTMVY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                             + V  +   + +E+ A +  + IP  T ++     L +  +S
Sbjct: 180 SRTEINPQFASIV--PPTDVVIVVKFELEMEHTAGTVTVCIPYST-IEPIRTKLYAGFQS 236

Query: 221 E--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +      + +  F ++  +  V     +   + T  D++ LK+G V+          +  
Sbjct: 237 DQLEVDHEWMRRFRKQLREAEVEFTVELGRTELTSGDLLQLKVGDVLQLDSDINGHLVAM 296

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G   +    G++  N   R+    ++  + 
Sbjct: 297 VEGVPKFLGRPGQMRGNKAFRVEGFKDYGAEI 328


>gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 244

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 84/245 (34%), Gaps = 18/245 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++        +    D++    Q  KF   +HS       + A +           
Sbjct: 9   ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L++N  G       ++  R  +  E ++ +  + Q    L +      E    
Sbjct: 69  DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 124

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                + +Y+    N         +E V     ++ ++       + +P   +++     
Sbjct: 125 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 178

Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ ++ G VIP    +
Sbjct: 179 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 238

Query: 272 KTCAI 276
                
Sbjct: 239 SLVMR 243


>gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
 gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
          Length = 330

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 94/292 (32%), Gaps = 13/292 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P       R+         I          +   L       +   VDIS  S ++ K+S
Sbjct: 41  PYDMATQERIVRGRMPALEIINA------RFANSLQIGLYNFLRRGVDISAGSIKTIKYS 94

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               S       +  S+        I    NL+  +++N+ G       ++  R  +  E
Sbjct: 95  EFTRSLVVPANINMVSMKPLRGTALITIDPNLIFLIVDNMFGGDGRFHTRVEGREFTLTE 154

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           + + +R +  +     +   +            +++    N    ++  V   +  + + 
Sbjct: 155 QGIIRRLLDVLFENYEKAWKSVYPVRFEYIR-AEMNPQFANIATPTD-VVVASSFELNLG 212

Query: 192 NVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
                F +  P  T+L+     L  S Q        + I    R+     + I   +   
Sbjct: 213 GNRGEFYICTPY-TMLEPIRDLLNNSMQEDHAEVDNNWIKSLTRQVQGAEIEIIANLGHT 271

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           + TL  ++ ++ G VI          +  ANG  I  C  G +  +Y +++ 
Sbjct: 272 RVTLHQILNMQEGDVIALDIP--DTVVAMANGVPIMDCHYGILNDHYALKVK 321


>gi|237653569|ref|YP_002889883.1| flagellar motor switch protein FliM [Thauera sp. MZ1T]
 gi|237624816|gb|ACR01506.1| flagellar motor switch protein FliM [Thauera sp. MZ1T]
          Length = 336

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 7/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++L       M  + ++S    +  K++  + +       +  +         +  
Sbjct: 59  ERFARYLRIGLFNYMHRNAEVSAGPIKVQKYAEFVRNLVVPTNLNLITAKPLRGTGLVVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++N+ G       ++  R  +  E+++ +  +  + A   +  +      P 
Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIRGMLDVVFAEYVRAWAPVFNLQPE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     +E V + ++++      +   +  P   +L+     L S  +
Sbjct: 179 FIR-SEMNSQFANI-ATPSEVVVSTSLSVEFGGSQAEMHICFPYS-MLEPIRDLLYSSMQ 235

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+        I    R+     V +       + +L+D+V +++G VIP   +    A +
Sbjct: 236 SDHLTSDRRWIKLLTRQLQTAEVELACSFGTARVSLRDIVDMRVGDVIPLAVQPVLQAEV 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +G  ++ C  G     Y +R+   I  +  
Sbjct: 296 --DGVPVFECRQGTRNGRYALRVERFITAEDN 325


>gi|254251031|ref|ZP_04944349.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124893640|gb|EAY67520.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 332

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEIPVTFEKILNLRAGDVLPLEIPDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAGDTM 326


>gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16]
 gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16]
          Length = 339

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 4/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    DI+  S +  KF     +       +   L           
Sbjct: 62  ERFARSMRTALFNFIRRGADITVGSIRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVY 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++NL G       ++  R  +  E+++ +R +    A       T       
Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVHPIETE 181

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                             NE V T   ++ +  V     + +P   +     + ++    
Sbjct: 182 YIRSEMHPKFANV--ATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 239

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +   +  +   + +     V +       ++T+ +V+ ++ G V+P    EK       
Sbjct: 240 EKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEK--VFGKV 297

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +G  +  C  G +   Y +R+   IN   
Sbjct: 298 DGVPVMQCGFGTMNGQYALRVERMINHQD 326


>gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 338

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 17/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +F        +   V+ S    +  KF   +         +   L S   N  +  
Sbjct: 60  ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              +V  L++++ G S     ++  R  S +E ++++  +        +  +        
Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPV------ 173

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                 I Y++   N          E V T+   + I+    +  + IP  T ++     
Sbjct: 174 --HPMPITYIRSEINPQFAAIVAPTEMVVTMAYRLEIDGQGRTIYICIPYST-IEPIKEK 230

Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+        I+    +  +  + I+  I   + TL+D++  K G V       
Sbjct: 231 LYTGFQSDQYEVDSRWINRLQERVEEAPLEIEAFIGEARFTLRDILGWKTGDVFSLDRYV 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +   G   +    G    +  IRI  R+   
Sbjct: 291 SEPVEVRVEGIVRFLARPGIFRHHRAIRIERRVPPP 326


>gi|42766718|gb|AAS45442.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei]
          Length = 332

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   + S          
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKSLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326


>gi|300311368|ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae
           SmR1]
 gi|300074153|gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 11/288 (3%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            R+    G   T+E I+     L++  L            +IS    +  K+S  I +  
Sbjct: 44  ERIVR--GRMPTLEIINERFARLFRIGLFNFIH----RTAEISVGPVKVSKYSEFIRNLV 97

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
                +   +  +     +      V  L++N+ G       ++  R  +  E+++  R 
Sbjct: 98  VPTNLNLVHIKPFRGIGLVVFDPQFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRV 157

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +        +                +++    N     NE V +    + +  V+    
Sbjct: 158 LEITFETYAKSWEPIYPIEFEFIR-SEMNTQFANI-ATPNEVVVSTTFTVELGPVSGEIH 215

Query: 199 LIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           +  P   +      ++ S Q ++    +  I    ++     V +       +    D++
Sbjct: 216 ICTPYSMIEPVRDRLTSSMQGEALEVDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLL 275

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            +++G VIP      T      +G  +  C  G+    Y +R+   ++
Sbjct: 276 HMQVGDVIPLQT--NTTVEAQVDGVPVMECSYGQSNGQYALRVEKLLS 321


>gi|187478203|ref|YP_786227.1| flagellar motor switch protein [Bordetella avium 197N]
 gi|115422789|emb|CAJ49317.1| flagellar motor switch protein [Bordetella avium 197N]
          Length = 334

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 91/271 (33%), Gaps = 6/271 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +  +    M    DI+  S +  K++    +       +   +           
Sbjct: 60  ERFARNMRHVLLNFMRRSADITVGSIKIIKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  ++++L G       ++  R  +T E+++ +R +        +          +
Sbjct: 120 DPSLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFD 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217
                        T   +NE V   + ++          + +P   +      L      
Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +  E   +      +R+    ++++        ++++ ++ LK+G V+P    E   A +
Sbjct: 238 SALEEVDQRWSQQLSRQVRSADIDLVAEFARIPSSIRGLMNLKVGDVLPVDVPESITAHV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +G  +  C  G     Y +R+ + +N D 
Sbjct: 298 --DGVPLMECSYGVFNGKYALRVQNMLNQDD 326


>gi|172059107|ref|YP_001806759.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6]
 gi|171991624|gb|ACB62543.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6]
          Length = 332

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +T + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|115350088|ref|YP_771927.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD]
 gi|115280076|gb|ABI85593.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD]
          Length = 332

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +T + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|161523223|ref|YP_001578235.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
           17616]
 gi|189348920|ref|YP_001944548.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
           17616]
 gi|221201776|ref|ZP_03574813.1| flagellar motor switch protein FliM [Burkholderia multivorans
           CGD2M]
 gi|221207719|ref|ZP_03580727.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2]
 gi|221214537|ref|ZP_03587507.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1]
 gi|160340652|gb|ABX13738.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
           17616]
 gi|189332942|dbj|BAG42012.1| flagellar motor switch protein [Burkholderia multivorans ATCC
           17616]
 gi|221165427|gb|EED97903.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1]
 gi|221172565|gb|EEE05004.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2]
 gi|221178196|gb|EEE10606.1| flagellar motor switch protein FliM [Burkholderia multivorans
           CGD2M]
          Length = 332

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEIPTTFEKILNLRAGDVLPLDIADTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|83720285|ref|YP_440587.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           E264]
 gi|167579274|ref|ZP_02372148.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           TXDOH]
 gi|167617380|ref|ZP_02386011.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           Bt4]
 gi|83654110|gb|ABC38173.1| flagellar motor switch protein FliM [Burkholderia thailandensis
           E264]
          Length = 332

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLDIADSITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum]
          Length = 338

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 17/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +F        +   V+ S    +  KF   +         +   L S   N  +  
Sbjct: 60  ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              +V  L++++ G S     ++  R  S +E ++++  +        +  +        
Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPV------ 173

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                 I Y++   N          E V T+   + I+    +  + IP  T ++     
Sbjct: 174 --HPMPITYIRSEINPQFAAIVAPTEMVVTMAYRLEIDGQGRTIYICIPYST-IEPIKEK 230

Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L +  +S+        I+    +  +  + I+  I   + TL+D++  K G V       
Sbjct: 231 LYTGFQSDQYEVDSRWINRLQERVEEAPLEIEAFIGETRFTLRDILGWKTGDVFSLDRYV 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                +   G   +    G    +  IRI  R+   
Sbjct: 291 SEPVEVRVEGIVRFLARPGIFRHHRAIRIERRVPPP 326


>gi|238025700|ref|YP_002909931.1| flagellar motor switch protein FliM [Burkholderia glumae BGR1]
 gi|237874894|gb|ACR27227.1| Flagellar motor switch protein FliM [Burkholderia glumae BGR1]
          Length = 332

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E ++  R +  +    +    + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEMRIISRLLHLVFEHYSVAWKSVRPLQFEH 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +T + ++ L++G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTANLTEMPSTFEKILNLRVGDVLPIDVEESIIAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVNRMISASDTM 326


>gi|170698080|ref|ZP_02889161.1| flagellar motor switch protein FliM [Burkholderia ambifaria
           IOP40-10]
 gi|170137041|gb|EDT05288.1| flagellar motor switch protein FliM [Burkholderia ambifaria
           IOP40-10]
          Length = 332

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +T + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|171316890|ref|ZP_02906099.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5]
 gi|171097971|gb|EDT42789.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5]
          Length = 332

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +T + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326


>gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
 gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
           19624]
          Length = 331

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 5/272 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    +IS    Q  ++S  +        F+  ++     N  I C
Sbjct: 59  ERFARNLRISLFNFIRRSPEISVGPVQVQRYSAFLRELAVPTSFNIMAVRPLRGNGMIVC 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +L+  +++ L G   +   ++  R  S  E+++  R +  IS    +           
Sbjct: 119 EPSLIFGVIDTLYGGIGKFQSRIEGRDFSATEQRIINRLVDVISDEYKKAWRGIYPLELE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
            +   ++     N     +E V + +  + I  ++ +    IP  TL     +  SS Q 
Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIRDVLYSSTQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            S       ++   R+    +V +   +    TT+++++ +K+G  I    + +  A +S
Sbjct: 237 DSMEVDRRWVNVLTREIQAADVTLVAELARANTTVEELLAMKVGDFIELERQPRIEATIS 296

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G  ++ C+ G     Y IRI   +  +  S
Sbjct: 297 --GVPVFECQYGTHNAKYAIRIERSLRGNDTS 326


>gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
           19718]
 gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
           19718]
          Length = 330

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 90/263 (34%), Gaps = 7/263 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            +   L       +   VDIS  S ++ K+S    S       +  S+            
Sbjct: 64  RFANSLQIGLYNFLRRGVDISAGSIKTIKYSEFTRSLVVPANINLVSMKPLRGTALFTID 123

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NL+  +++N+ G       ++  R  +  E+ + +R +  +     +   +        
Sbjct: 124 PNLIFLIVDNMFGGDGRFHTRVEGREFTLTEQGIIRRLLDVLFEHYEKAWQSVYPVKFEY 183

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQN 218
               +++    N    ++  V      + +      F   IP  T+L+     L  S Q 
Sbjct: 184 IR-AEMNPQFANIVTPTD-IVVASAFELNLGGNRGEFYTCIPY-TMLEPIRDLLNNSMQE 240

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
                 ++ I    R+     + I   +   + TL  ++ ++ G VI     +   AI  
Sbjct: 241 DRAEVDKNWIKSLTRQVQGAEIEIIANLGQTQVTLHQILNMQEGDVIALDIPDTVVAI-- 298

Query: 279 ANGKEIYSCELGRVGKNYTIRIT 301
           AN   I  C  G +  +Y +++ 
Sbjct: 299 ANNVPIMDCHYGILNGHYALKVK 321


>gi|167585018|ref|ZP_02377406.1| flagellar motor switch protein FliM [Burkholderia ubonensis Bu]
          Length = 332

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 84/271 (30%), Gaps = 5/271 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKMLNLVFEHYTTAWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNK 219
                            NE V     ++       +  + +P   +     +  S  Q +
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYSMVEPIRDVLASPIQGE 237

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           +       +   +++     V +   +     T + ++ L+ G V+P    +   A +  
Sbjct: 238 ALEVDRRWVRVLSQQVQTAEVEVTANLAEIPVTFEQILNLRAGDVLPLAIEDTITAKV-- 295

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +G  +  C  G     Y +R+   I+ +   
Sbjct: 296 DGVPVMECGYGIFNGQYALRVQKMISANDTM 326


>gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
 gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
          Length = 332

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E ++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEMRIISKLLHMVFEHYTVAWKSVRPLQFEH 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L++G V+P            
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEVPTTFERILNLRVGDVLPLDIG--DAVTAK 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I     +
Sbjct: 295 VDGVPVMECGYGIFNGQYALRVNRMIGASDTT 326


>gi|107021592|ref|YP_619919.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU
           1054]
 gi|116688064|ref|YP_833687.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           HI2424]
 gi|170731414|ref|YP_001763361.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           MC0-3]
 gi|206561843|ref|YP_002232608.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           J2315]
 gi|254246641|ref|ZP_04939962.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184]
 gi|105891781|gb|ABF74946.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU
           1054]
 gi|116646153|gb|ABK06794.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           HI2424]
 gi|124871417|gb|EAY63133.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184]
 gi|169814656|gb|ACA89239.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           MC0-3]
 gi|198037885|emb|CAR53829.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
           J2315]
          Length = 332

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +T + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTANLAEISSTFEKILNLRAGDVLPLEIEDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I      
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMIGASDSM 326


>gi|239817144|ref|YP_002946054.1| flagellar motor switch protein FliM [Variovorax paradoxus S110]
 gi|239803721|gb|ACS20788.1| flagellar motor switch protein FliM [Variovorax paradoxus S110]
          Length = 333

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 4/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    DIS       ++   +         +   +           
Sbjct: 61  ERFARHLRSSLLNFMRRSPDISVGPVHIQQYGEFVRHLPVPANINMLHMKPLRGTALFVF 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  +++NL G+      ++  R  +  E+++ KR +                 S +
Sbjct: 121 DPKLVFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLNLTLQCYADAWQPVFPLSFD 180

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                    L        NE V    + +    V     + IP   +     +  +    
Sbjct: 181 YVRAEMHGKLANIV--APNEVVINTTLQIEFGPVGGFLHVCIPYSMIEPIRDLLSNPVQD 238

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                +  +   +++    +V +        +T+ +V+ L++G V+P      T      
Sbjct: 239 EIEVDKRWVRQMSQQMQSADVELSAEFITLPSTIGEVLKLQVGDVLPIELP--TSITARV 296

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +G  +  C  G   + Y +R+   I+   
Sbjct: 297 DGIPVMECGYGVSNERYALRVLQMISHQD 325


>gi|33592495|ref|NP_880139.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I]
 gi|33601558|ref|NP_889118.1| flagellar motor switch protein FliM [Bordetella bronchiseptica
           RB50]
 gi|33572141|emb|CAE41684.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I]
 gi|33575994|emb|CAE33074.1| flagellar motor switch protein FliM [Bordetella bronchiseptica
           RB50]
 gi|332381913|gb|AEE66760.1| flagellar motor switch protein FliM [Bordetella pertussis CS]
          Length = 336

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 6/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +  +    M  + DI+  + +  K++    +       +   +           
Sbjct: 60  ERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  ++++L G       ++  R  +T E+++ +R +        +           
Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217
                        T   +NE V     ++          + +P   +      L      
Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              E   +       R+    ++++        +++ +++ +K G V+P    E      
Sbjct: 238 TALEEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPE--TVTA 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +G  +  C  G     Y +R+ + IN+D  
Sbjct: 296 HVDGVPLMECGYGVFNGRYALRVQNLINYDDT 327


>gi|295678044|ref|YP_003606568.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002]
 gi|295437887|gb|ADG17057.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002]
          Length = 332

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +            + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIITKLLNLTFEHYTASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++   +   +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGSTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++ +     +   +++     V +   +     T + ++ ++ G V+P    E   A + 
Sbjct: 237 EAMDVDRRWVRVLSQQVQAAEVQLTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326


>gi|134294173|ref|YP_001117908.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4]
 gi|134137330|gb|ABO53073.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4]
          Length = 332

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ L+ G V+P            
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTADLAEIPATFEKILNLRAGDVLPLEI--DDTITAK 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 295 VDGVPVMECGYGIFNGQYALRVQKMISAGDTM 326


>gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
 gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
          Length = 336

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 97/272 (35%), Gaps = 7/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++L       M  + ++S    +  K++  + +       +            +  
Sbjct: 59  ERFARYLRIGLFNYMHRNAEVSVGPIKVQKYAEFVRNLVVPTNLNLVLGKPLRGTGLVVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  +++N+ G       ++  R  +  E+++ +  +  +     +  +        
Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIQGMLNVVFTEYAKAWAPV--FKLE 176

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           LE        +       +E V + + ++ +    +   +  P   +++     L S  +
Sbjct: 177 LEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYS-MVEPIRDLLYSTMQ 235

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+   Q    I   +R+     V +   +   + TL+D+V +++G VIP    E   A +
Sbjct: 236 SDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPLQVSELLQATV 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +G  +  C  G     +  ++   +  D+ 
Sbjct: 296 --DGVPVLECRYGTQNGQFAFKVDRFLGPDET 325


>gi|167560937|ref|ZP_02353853.1| flagellar motor switch protein FliM [Burkholderia oklahomensis
           EO147]
 gi|167568197|ref|ZP_02361071.1| flagellar motor switch protein FliM [Burkholderia oklahomensis
           C6786]
          Length = 332

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +    +    + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYSVAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    TT + ++ L+ G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEIPTTFEKILNLRAGDVLPLDIAETLTAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   ++     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMVSASDTM 326


>gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
 gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
          Length = 334

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 93/270 (34%), Gaps = 7/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +   V++S    +  K+S  + +       +   +        +  
Sbjct: 58  ERFARLVRIELFNFLRRTVEVSVGPVRITKYSDFVRNLVVPTNLNLIQMKPLRGTALMVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  +++N+ G       ++  R  +  E+++ +R +  +    ++           
Sbjct: 118 DPTLVFLVVDNMFGGDGRFHTRVEGRDFTQTEQRIIQRILNIVFETYSKSWEPVYPVQFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     NE V  +  N+ +   +       P   +L+     LSS  +
Sbjct: 178 YMR-SEMNTQFANI-ATPNEVVIAVTFNVELGPASGEIHFCFPYS-MLEPLRDMLSSPLQ 234

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E     +  +    ++     V I   +      + DV+ +K+G V+P    E   A +
Sbjct: 235 GEVLGTDKRWVKLMTQQVQAAEVEIVADLAKTNMMIGDVLNMKVGDVVPLNIEESIEAQV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +G  +  C+ G     Y +R+   +  +
Sbjct: 295 --DGVPVMLCKYGMFNGQYALRVEKLLRSN 322


>gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 333

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 5/247 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +++  + +  K+S  +        F+  ++     +  I C   LV  +++ L G + + 
Sbjct: 78  EVAVGTIKVQKYSAFLREIVVPTNFNIMAVRPLRGSGLIVCDPTLVFAVIDALFGGAGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E ++  R +  ISA   +  +         +                +
Sbjct: 138 HTRIEGRDFSPTELRVISRLVEVISAEYKKAWAGVYPVELEYQRSEMQPQFATI--AAPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V T +  + I + + +    IP  TL        S+ Q  +       +    ++   
Sbjct: 196 EIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQGDANEPDRRWVKLLTQQIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V++   +     T++ ++ LK G  I              +G  ++ C  G     Y 
Sbjct: 256 AEVDLVAELAQAPATVEQLLALKPGDFIELDL--DQVVHAKVDGVPVFDCHYGTSNGKYA 313

Query: 298 IRITDRI 304
           I+I   +
Sbjct: 314 IKIDQLL 320


>gi|296135698|ref|YP_003642940.1| flagellar motor switch protein FliM [Thiomonas intermedia K12]
 gi|294339869|emb|CAZ88232.1| Flagellar motor switch [Thiomonas sp. 3As]
 gi|295795820|gb|ADG30610.1| flagellar motor switch protein FliM [Thiomonas intermedia K12]
          Length = 336

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 104/298 (34%), Gaps = 13/298 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P       R+    G   T+E I+     L++  L    +       +IS +S +  K++
Sbjct: 37  PYDLASQDRIVR--GRMPTLEVINERFARLWRVSLFNFLRRAS----EISVSSVKLTKYN 90

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             I         +   +              L+ ++++N  G       ++  R  + +E
Sbjct: 91  EFIRGLVVPSNLNLVQMKPLRGTALFIFDPRLIFSVIDNFFGGDGRFHARIEGRDFTPLE 150

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ KR +  +        +      P L         +        E V     ++ IE
Sbjct: 151 QRIIKRMLDMVFKEYKTAWAPVLPLEPELTRSEV--NPQFVNIATPTEVVIVSTFDVEIE 208

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLK 249
               S  + IP   +++     L++   ++    D   +     +  +  V +   +  +
Sbjct: 209 GGGGSLHVCIPYS-MVEPIRDQLTTGMTTDRSEVDHRWVKALQTEMREAEVEMRVELLQR 267

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +  +++++ L++G V+P    E    I   +G  +   E GR      ++I  ++  +
Sbjct: 268 QILVRELLNLRVGDVLPVDMPE--TVIARVDGIPVLLGEYGRHEDKMALKIRQQLFPE 323


>gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 222

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 20/234 (8%)

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
             + A +              LV  L++N  G       ++  R  +  E ++ +  + Q
Sbjct: 1   SLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQ 59

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVAS 195
               L +      E         + +Y+    N         +E V     ++ ++    
Sbjct: 60  AFVDLKEAWQAIMEV--------NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGG 111

Query: 196 SFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
              + +P   +++     L +  +S  ++Q E  ++        +NV + T I  ++  L
Sbjct: 112 DLHVTMPYS-MIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPL 170

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +D++ ++ G VIP    +    ++ ANG   +  +LG       +++ + I   
Sbjct: 171 RDILHMRPGDVIPVELSDS--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 222


>gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
 gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
          Length = 337

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 105/293 (35%), Gaps = 11/293 (3%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKE 79
            L ++  I +       +  + L ++++  +        +IS    +  K+S  I S   
Sbjct: 40  DLANQDRIVRGRMPTLEVVNERLARLWRVSLFNFLRRSAEISVGPVRLVKYSEFIRSLMV 99

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
               +   +     +        L+  +++N  G       ++  R  + +E+++ KR +
Sbjct: 100 PSNINIVQVKPLRGSALFVFDARLIFAVVDNYFGGDGRFHARIEGREFTPLEQRIIKRLL 159

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             +        S   +  P L         +  +     E V     N+ +E+   SF +
Sbjct: 160 DLVFKDFKSAWSPVIDLQPELSRSEV--NPQFVSIATPTEVVIVSTFNIELESGTGSFQI 217

Query: 200 IIPQETLLKTTLISLSSQNKSENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            +P   +++     L++   ++     +  +     +  +  + +         +++ ++
Sbjct: 218 CLPYG-MVEPVRDQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFARLPISVRQLL 276

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            L++G VIP    E    +   +G  ++    G  G  Y I+  + +  + +S
Sbjct: 277 ALRVGDVIPLERPE--TLVARVDGIPVFRGPYGVHGGKYAIQFHEALPPETES 327


>gi|293607830|ref|ZP_06690150.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC
           43553]
 gi|292813773|gb|EFF72934.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC
           43553]
          Length = 335

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +  +    M    DI+  S +  K++    +       +   +           
Sbjct: 60  ERFARHMRNVLLNFMRRSADITVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  ++++L G       ++  R  +T E+++ +R +        +           
Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217
                        T   +NE V   + ++          + +P   +      L     +
Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              E   +      +R+    ++++        +++++++ LK+G V+P    E    I 
Sbjct: 238 TTLEEVDQRWSQQLSRQVRSADIDVVAEFARIPSSIRELMHLKVGDVLPVDVPE--TIIA 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           + +G  +  C  G     Y +R+ +   +D  S
Sbjct: 296 NVDGVPLMECGYGVFNGQYALRVQNMFTYDTDS 328


>gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
           JA2]
 gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
           JA2]
          Length = 334

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 88/251 (35%), Gaps = 5/251 (1%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    +  KFS  +        F+  S+     +  I C  N+V  +++ L G + + 
Sbjct: 78  EVSIGGIKVQKFSAFLREIVVPTNFNLVSVKPLRGSGLIVCDPNVVFAVIDALFGGAGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E ++  R +  I A   +            +   ++     N     +
Sbjct: 138 HTRIEGRDFSPTELRVILRLVECIIAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I + + +    IP  TL     +  S+ Q  S       ++    +   
Sbjct: 196 EIVVSTAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQGDSAEPDRRWVNLLKHQIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V++   +     T++ +++ K G  I         A +  +G  ++ C  G     Y 
Sbjct: 256 AEVDLVAELGHAPATVEQLLSFKPGDFIELDLDPMIQAKV--DGVPVFDCHYGTTNGRYA 313

Query: 298 IRITDRINFDQ 308
           I+I   +    
Sbjct: 314 IKIDRLLTSSN 324


>gi|254292908|ref|YP_003058931.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814]
 gi|254041439|gb|ACT58234.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814]
          Length = 376

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 101/267 (37%), Gaps = 6/267 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +     +V++S  S  S +F   ++S     + S        +   +   
Sbjct: 100 RLVRLLTTSLRNFTSDNVEVSLDSIASMRFGDYLNSIPLPAILSVFRARQLDNYGLVTVD 159

Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NL+ ++++ LLG    T   ++  R  +T+E+ L  R +  I A   +  +   E   +
Sbjct: 160 SNLIYSIVDVLLGGRRGTAAMRVEGRPYTTIERMLVTRLVEVILADAKKAFNPLTEVDFD 219

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           L+               +      + + + +E+      L++P  TL  ++  L+     
Sbjct: 220 LDRIETNPRFAAIAQPANAA--ILVRLRVDMEDRGGRCELMLPYATLEPIRKMLLQNFMG 277

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K  N         A + +    N+   ++  +  L  +++L++G  +     + +   L
Sbjct: 278 EKFGN-DNIWEGHLATEIWTAPTNVRVVMDEFEQPLGRMMSLEVGDTLLMTAGQNSKVSL 336

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304
                 +   ++GR+GK   +R+   +
Sbjct: 337 RCGDIYLTEGQIGRIGKKVAVRVDAPL 363


>gi|187925747|ref|YP_001897389.1| flagellar motor switch protein FliM [Burkholderia phytofirmans
           PsJN]
 gi|187716941|gb|ACD18165.1| flagellar motor switch protein FliM [Burkholderia phytofirmans
           PsJN]
          Length = 332

 Score =  162 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ ++ G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+  +  
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAAETM 326


>gi|253996306|ref|YP_003048370.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8]
 gi|253982985|gb|ACT47843.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8]
          Length = 334

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 90/270 (33%), Gaps = 7/270 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +   V++S    +  K+S  I +       +   +        +  
Sbjct: 58  ERFARLVRIELFNFLRRTVEVSVGPVRITKYSDFIRNLVVPTNLNLVQMKPLRGTALMVF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  +++N+ G       ++  R  +  E+++ +R +A +     +           
Sbjct: 118 DPTLVFLVVDNMFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFETYAKSWEPVYPIEFE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +++    N     NE V     N+ +   +      +P   +++     L+S  +
Sbjct: 178 YLR-SEMNTQFANI-ATPNEVVVVTTFNVELGPASGEIHFCMPYS-MVEPIRDLLTSPLQ 234

Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            E     +  +    ++     + I   +   +  L  V+ +K+G VIP           
Sbjct: 235 GEVLGADKRWVKLMTQQVQAAEIEIVADLATTEMHLGKVLNMKVGDVIPISM--DDAIEA 292

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
             +G  +  C+ G     Y +R+   +  +
Sbjct: 293 KVDGVPVMLCKYGLFNGQYALRVEKLLRSN 322


>gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
 gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
          Length = 335

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +  +    M    DI+  S +  K++    +       +   +           
Sbjct: 60  ERFARQMRHVLLNFMRRSADITVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  ++++L G       ++  R  +T E+++ +R +        +           
Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217
                        T   +NE V   + ++          + +P   +      L     +
Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              E   +      +R+    ++++        +++++++ LK+G V+P    E    + 
Sbjct: 238 TTLEEVDQRWAQQLSRQVRSADIDVVAEFARIPSSIRELMRLKVGDVLPVTVPE--TIVA 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           S +G  +  C  G     Y +R+ +    D +S
Sbjct: 296 SVDGVPLMECGYGVFNGQYALRVQNMFTHDTES 328


>gi|308273526|emb|CBX30128.1| hypothetical protein N47_D29370 [uncultured Desulfobacterium sp.]
          Length = 322

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 5/267 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             +  FL +     + L  D+S     S KF     S       +   +        +  
Sbjct: 59  ERFINFLNESLPGTIGLSTDVSVDEIDSIKFGDFCRSLPVPTSLNIFKMEPLKGFALLVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV   ++ + G    +  +L  R  + +E+K+  R +  +   L +  +  ++    
Sbjct: 119 EGWLVFAFVDAMFGGKGVSHVKLEGRGFTAIEQKIVSRIVDIVLVDLQKAWAEIKDLKMV 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                ++D       + ++  + T    + I N      + +P + +++     L    +
Sbjct: 179 YTR-SEMDPQFAGIAKPTDMIIAT-KFALNIGNFTGGMTICLPYD-VIEPIGEKLKENYR 235

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           SE    D        +K  +L++N+   +   K T ++ + +K+  V+    +     ++
Sbjct: 236 SEKFEADPVWKQHIKKKIQELDINLKCTLGRIKITGREFLEMKVDDVLLTGQKVDDPIVV 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304
           S      +   +G +     IRI D+I
Sbjct: 296 SVGDLNKFKGHVGSMNNKKAIRIADKI 322


>gi|91785619|ref|YP_560825.1| flagellar motor switch protein FliM [Burkholderia xenovorans LB400]
 gi|296157439|ref|ZP_06840274.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1]
 gi|91689573|gb|ABE32773.1| Flagellar motor switch protein FliM [Burkholderia xenovorans LB400]
 gi|295892211|gb|EFG71994.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1]
          Length = 332

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ ++ G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAKVPVTFEQILNMRKGDVLPINIPEHITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326


>gi|317406219|gb|EFV86466.1| flagellar motor switch protein [Achromobacter xylosoxidans C54]
          Length = 335

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 105/315 (33%), Gaps = 10/315 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSL---GYLYKKFLPKIFKEKMDLD 57
           + G+S  K  S   P   AR        + + +   +L      + + +  +    M   
Sbjct: 19  VTGESDSKKESAG-PNDGARAYDLSSPDRVVRRRMQTLELINERFARQMRSVLLNFMRRS 77

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
            DI+  S +  K++    +       +   +             NLV  ++++L G    
Sbjct: 78  ADITVGSIKIQKYADFERNLPVPSNLNMVQMKPLRGTALFTYDPNLVFLVIDSLFGGDGR 137

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
              ++  R  +T E+++ +R +        +          +             T   +
Sbjct: 138 YHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHTKFASITG--N 195

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQNKSENQSEDLIDPFARKT 235
           NE V   + ++          + +P   +      L     +   E   +      +R+ 
Sbjct: 196 NEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQV 255

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
              ++++        +++++++ +K+G ++P    +    I   +G  +  C  G     
Sbjct: 256 RSADIDVVAEFARIPSSIRELMRMKVGDILPVDVPQ--TVIAHVDGVPLMECGYGVFNGQ 313

Query: 296 YTIRITDRINFDQKS 310
           Y +R+ +    D +S
Sbjct: 314 YALRVQNMFTHDTES 328


>gi|307731349|ref|YP_003908573.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003]
 gi|307585884|gb|ADN59282.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003]
          Length = 332

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIISKLLNLVFEHYAASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 MRSEMHTQFA--NVATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ ++ G V+P    E+  A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTADLAQVPITFEQILNMRKGDVLPINIPEQITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISAADTM 326


>gi|170694407|ref|ZP_02885561.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M]
 gi|170140830|gb|EDT09004.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M]
          Length = 332

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +            + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 MRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ ++ G V+P    E   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPITFEQILNMRKGDVLPINIPEHITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326


>gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
 gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
          Length = 334

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 5/245 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  I C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I A   +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ +  + +P  TL     +  SS Q  S       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ +K G  I      +  A  S  G  I+ C+ G     Y 
Sbjct: 256 AEVTLVAELAQADATVEQLLAMKPGDFIELDREPRIRA--SIGGVPIFECQYGTHNSKYA 313

Query: 298 IRITD 302
           IRI +
Sbjct: 314 IRIEE 318


>gi|300680950|sp|P0CG26|FLIM_CAUCR RecName: Full=Flagellar motor switch protein FliM
 gi|144253|gb|AAA62449.1| FliM [Caulobacter crescentus CB15]
          Length = 373

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 114/323 (35%), Gaps = 20/323 (6%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54
           N   +  +L   L+G   D +T  +   +   +  + LP                 +   
Sbjct: 53  NQDEIDSLLGFDLSGDGSDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 112

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
             +V++S  +  S +F   ++S     + +        +   +   +NL+ ++++ LLG 
Sbjct: 113 SDNVEVSLDNISSIRFGDYLNSIPLPGILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 172

Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
              T   ++  R  +T+E+ L +R I  +   L          S +L+            
Sbjct: 173 RRGTAAMRIEGRPYTTIERVLVQRMIDVVLHDLKSAFEPLHPVSFSLDRLET--NPPFAA 230

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231
                     + + + +E+      L++P  TL  ++  L+      K   +        
Sbjct: 231 IARPANAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 289

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           A + +   + +   ++ ++  L  V+ +++G  +      +     +     +    +GR
Sbjct: 290 ATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATSRQPGGAARRRIPLTRGRMGR 349

Query: 292 VGKNYTIRITDRINFDQKSLKNF 314
              +  +R    ++  +K+++  
Sbjct: 350 RNHSIAVRAEAPVDRRKKAVQKL 372


>gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
 gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
          Length = 334

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 5/247 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S    +  K+S  +        F+  S+     +  I C   LV ++++ L G S + 
Sbjct: 78  EVSVGGIKVQKYSAFLRETVVPTNFNIVSVRPLRGSGMIVCDPTLVFSVIDALFGGSGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I+    +            +   ++     N      
Sbjct: 138 HTRIEGRDFSPTEQRVISRIVEVIATEYKKAWQGIYPLELEYQR-SEMQPQFANI-AAPG 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V T +  + I +   +    IP  TL     +  SS Q  S       +     +   
Sbjct: 196 EIVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQGDSAEPDRRWVKLMTHQIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ LK G  I     +     +  +G  +   + G     Y 
Sbjct: 256 AQVQLVAELAHAPATVEQLLALKAGDFIELDLIKSIEVKV--DGVPVMEAQYGTSNGKYA 313

Query: 298 IRITDRI 304
           +++   +
Sbjct: 314 LKVDRML 320


>gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 334

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 5/251 (1%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  I C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I A   +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ +  + +P  TL     +  SS Q  S       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ +K G  I      +  A  S  G  I+ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNSKYA 313

Query: 298 IRITDRINFDQ 308
           IRI + +    
Sbjct: 314 IRIEECLRNPD 324


>gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
 gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
          Length = 334

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 5/251 (1%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  I C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I A   +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ +  + +P  TL     +  SS Q  S       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ +K G  I      +  A  S  G  I+ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNSKYA 313

Query: 298 IRITDRINFDQ 308
           IRI + +    
Sbjct: 314 IRIEECLRNPD 324


>gi|209522293|ref|ZP_03270920.1| flagellar motor switch protein FliM [Burkholderia sp. H160]
 gi|209497269|gb|EDZ97497.1| flagellar motor switch protein FliM [Burkholderia sp. H160]
          Length = 332

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +            + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYTASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++   +   +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGSTGGTLHICMPYS-MIEPIRDILSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++ +     +   +++     V +   +     T + ++ ++ G V+P    E+  A + 
Sbjct: 237 EAMDVDRRWVRVLSQQVQAAEVQLTADLAQVPVTFEQILNMRKGDVLPINIPERITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326


>gi|78064701|ref|YP_367470.1| flagellar motor switch protein FliM [Burkholderia sp. 383]
 gi|77965446|gb|ABB06826.1| Flagellar motor switch protein FliM [Burkholderia sp. 383]
          Length = 332

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +    +  + ++ L+ G V+P    +   A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTANLAEISSNFEKILNLRAGDVLPLEIEDTITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAGDSM 326


>gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
 gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
          Length = 334

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 87/245 (35%), Gaps = 5/245 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     +  + C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I     +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLELGYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ S  + +P  TL     +  SS Q  S       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ ++ G  I            S  G  I+ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPIFECQYGTHNDKYA 313

Query: 298 IRITD 302
           IR+ +
Sbjct: 314 IRVEN 318


>gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1]
          Length = 335

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 105/265 (39%), Gaps = 5/265 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
             L+      S  + K   II +   + +    S S W  +        LV  + E   G
Sbjct: 73  TSLEFSTDVQSLDTLKSDKIIQTIGTDTLLIYFSSSLWGDDVIFVLDATLVDLITEAFFG 132

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           A+   +     R  S  E K+++     ++  ++    T   S    +           T
Sbjct: 133 AAEPKLINRNGRPFSPTEYKISEYFGKLLANTMDGIFGTGDGSLLLFKQILKAQEFNAET 192

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231
              S  F  +  + +    + ++  +++P+    +    +++   ++  +  D       
Sbjct: 193 FHQSQMF--SCTLGVKCNEIETNVNILMPRSCH-RPIQEAVTRALRAPAKHTDPLWAKRL 249

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            ++  + +V+I+  I     TL ++  L++GQV+           L +  K +Y C LG+
Sbjct: 250 KQEVSRAHVSIEAFIQQGSMTLDELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGK 309

Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316
           +G N++IR+TD I+ +++ +   +H
Sbjct: 310 MGTNFSIRVTDPIDEEKEMIDELVH 334


>gi|251789181|ref|YP_003003902.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591]
 gi|247537802|gb|ACT06423.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591]
          Length = 338

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 61  ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S +LV   ++NL G       ++  R  +  E+++ +R +       +   +   +    
Sbjct: 121 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVRRMLKLALDAYSDAWNAIYKLDVE 180

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                ++     N     N+ V T   ++ I  +   F + IP   +++     L++   
Sbjct: 181 YVR-SEMQVKFTNITTSPNDIVVTTPFHLEIGTLTGEFSICIPFS-MIEPLRELLANPPL 238

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             +Q ED    +  A++     + +          L  V+ LK G ++P    E    + 
Sbjct: 239 ENSQQEDQHWRETLAKQVQHSELELVANFVDIPVRLSKVLKLKPGDILPIDKPE--RLVA 296

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + +C+ G +   Y +R+   IN    SL +
Sbjct: 297 HVDGVPVLTCQYGTLDGQYALRVEHLINPILNSLND 332


>gi|323527699|ref|YP_004229852.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001]
 gi|323384701|gb|ADX56792.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001]
          Length = 332

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 7/272 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS    +  K+S    +       +   +            
Sbjct: 60  RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  + +            + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEY 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218
                            NE V     ++       +  + +P   +++     LSS  Q 
Sbjct: 180 MRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           ++       +   +++     V +   +     T + ++ ++ G V+P    E+  A + 
Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPITFEQILNMRKGDVLPINIPEQITAKV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            +G  +  C  G     Y +R+   I+     
Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326


>gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 216

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 20/228 (8%)

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +              LV  L++N  G       ++  R  +  E ++ +  + Q    L 
Sbjct: 1   IKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLK 59

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLII 201
           +      E         + +Y+    N         +E V     ++ ++       + +
Sbjct: 60  EAWQAIMEV--------NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTM 111

Query: 202 PQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           P   +++     L +  +S  ++Q E  ++        +NV + T I  ++  L+D++ +
Sbjct: 112 PYS-MIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHM 170

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           + G VIP    +    ++ ANG   +  +LG       +++ + I   
Sbjct: 171 RPGDVIPVELSDS--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 216


>gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
 gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
          Length = 343

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 102/277 (36%), Gaps = 12/277 (4%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L    +     +V+ S     S +F   + +     +F+      W +   +  S
Sbjct: 61  RFTRILTTSLRNFTSDNVEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLS 120

Query: 101 NNLVITLLENLLGA--SHETIPQLY-----NRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
           ++L+ ++++ LLG     ++           R  + +E+ L +  +  I   L    S  
Sbjct: 121 SSLIYSIVDALLGGHVRGDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFSPL 180

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              + + E   +++       R  N  V T    + +E       +++P  T L+     
Sbjct: 181 CAVNFHFERL-EMNSRFAMICRAGNG-VVTARFGIDMEGRGGDVDIVLPHAT-LEPVRDI 237

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L  Q   E    D    +  AR+ +Q ++ +D  +  +   LKD++ L  G  +    + 
Sbjct: 238 LLQQFMGEKFGHDGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKP 297

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                L      +++  +GR      ++I D +N   
Sbjct: 298 DASVSLRCGEHVLFTGRVGRKQGQVAVKIEDVLNQKP 334


>gi|332284035|ref|YP_004415946.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7]
 gi|330427988|gb|AEC19322.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7]
          Length = 330

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 91/275 (33%), Gaps = 8/275 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L  +    M  + DI+  S +  K+S    +       +  ++           
Sbjct: 60  ERFARRLRSVLLSFMRRNADITVGSIRIQKYSDFERNLPVPSNLNMVTMKPLRGAALFTF 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  ++++L G       ++  R  +T E+++ +R +                    
Sbjct: 120 DPNLVFLVIDSLFGGHGRYSTRVEGRDFTTTEQRIIRRLLNLTLESYGGAWEQVYPVQFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                        T+   NE V   + N+ +     +  + +P   +++     L+   +
Sbjct: 180 YIRSEMHTKFASITS--GNEIVVVTSFNIELGASGGNLNICLPYS-MIEPVRDLLTRPLQ 236

Query: 220 SENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
             N     +       R+    +V +       ++++ +++ L++  ++P        A 
Sbjct: 237 EANAGAIDQRWTHQLTRQVRSADVELVAEFARIESSIGELMRLEVNDILPLEITPAINAH 296

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           +   G  +  C  G     Y +R+   +   +  +
Sbjct: 297 V--GGVPVMECTYGTFNGRYALRVKKVLASSETDI 329


>gi|307131596|ref|YP_003883612.1| flagellar motor switch protein fliM [Dickeya dadantii 3937]
 gi|306529125|gb|ADM99055.1| Flagellar motor switch protein fliM [Dickeya dadantii 3937]
          Length = 338

 Score =  159 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 107/307 (34%), Gaps = 12/307 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 36  DVKPYDPNTQRRVIRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIKIQ 89

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           S +LV   ++NL G       ++  R  +
Sbjct: 90  PYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 149

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +       +   +   +         ++     N     N+ V T   ++
Sbjct: 150 HTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHL 208

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  +   F + IP   +++     L++     +Q ED    +  A++     + +    
Sbjct: 209 EIGTLTGEFSICIPFS-MIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELVANF 267

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  V+ LK G ++P    E    +   +G  + +C+ G +   Y +R+   IN 
Sbjct: 268 VDIPVRLSKVLKLKPGDILPIDKPE--RLVAHVDGVPVLTCQYGTLDGQYALRVEHLINP 325

Query: 307 DQKSLKN 313
              SL +
Sbjct: 326 ILNSLND 332


>gi|271500079|ref|YP_003333104.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586]
 gi|270343634|gb|ACZ76399.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586]
          Length = 338

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 107/307 (34%), Gaps = 12/307 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 36  DVKPYDPNTQRRVIRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIKIQ 89

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           S +LV   ++NL G       ++  R  +
Sbjct: 90  PYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 149

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +       +   +   +         ++     N     N+ V T   ++
Sbjct: 150 HTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHL 208

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  +   F + IP   +++     L++     +Q ED    +  A++     + +    
Sbjct: 209 EIGTLTGEFSICIPFS-MIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELVANF 267

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  V+ LK G ++P    E    +   +G  + +C+ G +   Y +R+   IN 
Sbjct: 268 VDIPVRLSKVLKLKPGDILPIDKPE--RLVAHVDGVPVLTCQYGTLDGQYALRVEHLINP 325

Query: 307 DQKSLKN 313
              SL +
Sbjct: 326 ILNSLND 332


>gi|110805914|ref|YP_689434.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401]
 gi|110615462|gb|ABF04129.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401]
          Length = 349

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 45  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 99  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 217

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   NG  + + + G +   Y +RI   
Sbjct: 278 ANFADISLHLSQILKLKPGDVLPIEKP--DRIIAHVNGVPVLTSQYGTLNGQYALRIEHL 335

Query: 304 INF 306
           IN 
Sbjct: 336 INP 338


>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
 gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
          Length = 327

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 12/280 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           + I+ +       +   L    +      V+I   S     ++  + S   N  F+  SL
Sbjct: 57  RAIKNLHDKFSRNFSSKLSAFLRSI----VEIEVVSVDQMTYAEFVLSLSNNVSFNVVSL 112

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    N       ++   L++ LLG   E+     NR  + +E+ +    + Q    +  
Sbjct: 113 SPLDGNAVFSLEPDIGFALIDRLLGGIGES--SNINRPFTDIEQSILLDVVRQAMEEMRS 170

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 + S  +        + +      +E V  +   + +          +P   +L+
Sbjct: 171 SWEPIIDISFEVVGQESSPNVVQIV--APSEIVVLVVFEVKLGETTGIINWCLPV-IVLE 227

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             L  + + +   +S+  +ED I+  AR   ++ V ++ R+      ++D ++LK G ++
Sbjct: 228 PVLNKIGTHDILARSKKATEDRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLL 287

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               +      +  NG E Y  +LGR G N  ++I   I 
Sbjct: 288 TLDKKVDDELPVFINGVEKYGVKLGRKGYNKAVKINRIIG 327


>gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
 gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
          Length = 329

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 95/270 (35%), Gaps = 5/270 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    +IS       ++S  +        F+  ++     +  I C
Sbjct: 59  ERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPTNFNIVAIRPLRGSGMIVC 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  +++ L G   +   ++  R  S  E+++  R +  I+    +           
Sbjct: 119 EPSLVFGVIDTLYGGIGKFQARIEGRDFSATEQRVINRLVDVITEEYKKAWKGVYPLELE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
            +   ++     N     +E V + +  + I  +A S    +P  TL     I  SS Q 
Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVISTSFQLEIGEIAGSIHFCMPYATLEPIRDILYSSTQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            S    +  ++   ++     + +   +     T++ ++ +K G  I       +   ++
Sbjct: 237 DSIEVDKRWVNVLTQEIQAAEITLVAELARADATVEQLLAMKTGDFIELDRP--SRIEVT 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             G  ++ C+ G     Y IRI   +  + 
Sbjct: 295 VEGVPVFECQYGTHNAKYAIRIDKSLRGND 324


>gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY]
 gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
 gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY]
          Length = 334

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 90/245 (36%), Gaps = 5/245 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS  +    ++S  +        F+  ++     +  + C  +LV  +++ L G   + 
Sbjct: 78  EISVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKF 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  S  E+++  R +  I A   +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSATEQRVINRLVDVICAEYKKAWQGIYPLELAYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I ++A +  + +P  TL     +  SS Q  +       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDLAGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVRVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ +K G  I      +  A  S  G  ++ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELEREPRIRA--SIEGVPVFECQYGTHNSKYA 313

Query: 298 IRITD 302
           IRI +
Sbjct: 314 IRIEE 318


>gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
           EF01-2]
 gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
           EF01-2]
          Length = 334

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 96/276 (34%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    +IS       ++S  +        F+  ++     +  + C
Sbjct: 59  ERFARNLRIGLFNFIRRSPEISVGMVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVC 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV  +++ L G + +   ++  R  S  E+++  R +  I A   +           
Sbjct: 119 EPSLVFGIIDTLYGGAGKFQTRIEGRDFSPTEQRVINRLVDVICAEYKKAWQGIYPLELE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
            +   ++     N     +E V +    + I ++  +  + +P  TL     +  SS Q 
Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLPGAIHMCMPYATLEPIRDVLYSSTQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            S       +    R+     V +   +     T++ ++ LK G  I    + +  A   
Sbjct: 237 DSIEVDRRWVRVLTREIQAAEVVLVAELARADATVEQLLALKPGDFIELERQPRIRAA-- 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKN 313
             G  I+ C+ G     Y IRI   + N D   L  
Sbjct: 295 IGGVPIFECQYGTHNCRYAIRIEKCLRNADPSWLGE 330


>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
 gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
           DSM 16646]
          Length = 331

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 9/274 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L   F  ++   V I+ +S     +S  I S     +              I  
Sbjct: 60  ENFSRQLITFFSTQLRTLVQINASSVDQMPYSEFISSIPNPSIIGIVDFQPLRGAIIIAM 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + ++  ++++ LLG S E   +   R  + +E  +  R  +++  ++ +      E  P 
Sbjct: 120 NVSMAFSIIDRLLGGSGEY--KDKPREPTEIEANILHRVYSKLVKLMQEAWQDILEIHPV 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            +        +       NE V  I +N  I        + IP   +++  +  LS++  
Sbjct: 178 FDKLET--NPQFVQLVSPNEAVALITINTRIGKTDGLINICIPY-IVIEPVMSRLSTKIW 234

Query: 220 SENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             N  ++  + F +   +    +N  I   I   K T+++ + L +G VI       +  
Sbjct: 235 LSNSKKESPESFIKTITRKLENVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEV 294

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +    K  Y   +G+    + +RI   I+   +
Sbjct: 295 DVYVYDKLKYKGIMGKRNGRFAVRINKVISERDE 328


>gi|261821166|ref|YP_003259272.1| flagellar motor switch protein FliM [Pectobacterium wasabiae
           WPP163]
 gi|261605179|gb|ACX87665.1| flagellar motor switch protein FliM [Pectobacterium wasabiae
           WPP163]
          Length = 337

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 106/311 (34%), Gaps = 12/311 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
               +  P  P    R+  +    + +E I+      ++  L  + +       DI+   
Sbjct: 31  KTDGDVKPYDPNTQRRVIRER--LQALEIINERFARQFRMALFNLLR----RSPDITVGG 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L           S +LV   ++NL G       ++  
Sbjct: 85  IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 144

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ KR +        +  +   +         ++     N     N+ V T 
Sbjct: 145 REFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVR-SEMQVKFTNITTSPNDIVVTT 203

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNI 242
             ++ I ++   F + IP   +++     L+      S  + +   D  A++     + +
Sbjct: 204 PFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELEL 262

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L  ++ L+ G V+P    EK  A +  +G  + + + G +   Y +R+  
Sbjct: 263 VANFVDIPLRLSKILKLQPGDVLPIDKPEKIVAHV--DGVPVLTSQYGTLNGQYALRVEH 320

Query: 303 RINFDQKSLKN 313
            IN    SL N
Sbjct: 321 LINPILNSLDN 331


>gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
 gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
          Length = 334

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 5/248 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     N  I C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  ST E+++  R +  I     +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ S  + +P  TL     +  SS Q  +       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ ++ G  I            S  G  ++ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313

Query: 298 IRITDRIN 305
           IR+   + 
Sbjct: 314 IRVERSLR 321


>gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
 gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
 gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
          Length = 334

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 5/248 (2%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           ++S  +    ++S  +        F+  ++     N  I C  +LV  +++ L G +   
Sbjct: 78  EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  ST E+++  R +  I     +            +   ++     N     +
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQR-SEMQPQFANI-ATPS 195

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
           E V +    + I +++ S  + +P  TL     +  SS Q  +       +    R+   
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V +   +     T++ ++ ++ G  I            S  G  ++ C+ G     Y 
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313

Query: 298 IRITDRIN 305
           IR+   + 
Sbjct: 314 IRVERSLR 321


>gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
 gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
 gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1]
          Length = 326

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   V+++  S    KF   + S       +   +     N  I   
Sbjct: 60  RFARLCTNALSNAVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN  G S  + P++  R  + +E+ +  R I      + +      +    L
Sbjct: 120 SRLVFALVENFFGGSG-SQPKIEGREFTRIEQAIVDRVIHIALDNMEESWRPVHDVHLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I   + +++   S V+ +P  T ++     L +  ++
Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDSAIGSMVICLPYAT-IEPIRSKLHASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +     +  +  V +  R    K T   ++ L++G V+           ++
Sbjct: 236 ERLEVDHAWVARLKERLMETPVELKVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVT 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    G V  N   +I
Sbjct: 296 IAGVTKFWGLGGTVKANKAFQI 317


>gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
 gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
           4028]
          Length = 325

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M   VD++  S    KF   + S       +   +     N  +   
Sbjct: 60  RFSRLCTSALANTMRKRVDVNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALLVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
             LV +L+EN  G +  + P++  R  + +E+ +  + +  I A L        E S  L
Sbjct: 120 TRLVFSLVENFFGGAG-SQPKIEGRDFTPIEQSIIVKVVKIILANLEDAWRPVHEVSIEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I+  + +EN   S VL +P  T ++     L +  ++
Sbjct: 179 LRSEINPQFATIV--PPSDVVVVISFEVELENALGSMVLALPYAT-IEPIRSKLYAAFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   I  F  +  +  V+++      + T + ++ +K+G ++     E       
Sbjct: 236 ERLEIDHAWISRFRDRLMETPVDMNVTFGTTQITGRQLLDMKVGDILMLDQDEDDMLSGR 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
            +G   +    G V  N   +I
Sbjct: 296 IHGILKFFGLPGFVKGNKAFKI 317


>gi|33596151|ref|NP_883794.1| flagellar motor switch protein FliM [Bordetella parapertussis
           12822]
 gi|33573154|emb|CAE36805.1| flagellar motor switch protein FliM [Bordetella parapertussis]
          Length = 336

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 84/272 (30%), Gaps = 6/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +  +    M  + DI+  + +  K++    +       +   +           
Sbjct: 60  ERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             NLV  ++++L G       ++  R  +T E+++ +R +        +           
Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217
                        T   +NE V     ++          + +P   +      L      
Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              E   +        +    ++++        +++ +++ +K G V+P    E      
Sbjct: 238 TALEEVDQRWAQQLQSQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPE--TVTA 295

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +G  +     G     Y +R+ + IN+D  
Sbjct: 296 HVDGVPLMEYGYGVFNGRYALRVQNLINYDDT 327


>gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 350

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 108/313 (34%), Gaps = 9/313 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARL--TGKLGDKKTIEKISSSL---GYLYKKFLPKIFKEKMD 55
           ++G S  +++SP  P    R+         + I +   +L      + ++        + 
Sbjct: 16  LKGVSGEEDSSPSEPADTQRIRPYNPATQHRVIRERLHALDIINERFARYFRMSLFNLIR 75

Query: 56  LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS 115
              DI+  S +   +S    +       +  ++        +    +LV  +++NL G  
Sbjct: 76  RSADITVDSVRYQSYSDFARNVPVPTNINLLAMKPLRGTALVVFPPSLVFMVVDNLFGGD 135

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
              + +   R  +  E+++ +R +            +      +     ++     N   
Sbjct: 136 GRFLTKSEGREFTHTEQRIIRRLLGLALEAYQSAWKSVYPLEIDYLR-SEMQAKFANITS 194

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARK 234
             NE V     ++ + N+AS F +++P   +     +     N S  ++        A +
Sbjct: 195 SPNEIVINSTFHLEVGNLASDFNIVMPYLMIEPLRSLLNGPLNDSHPDEERQWGKRMASE 254

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             Q  + +          +  V+ LK+G V+P    E    +   +G  +  CE G    
Sbjct: 255 IKQSQIELIADFAGIDLCIGQVMALKVGDVLPIELPE--TVVARVDGVPVMRCEYGSRNG 312

Query: 295 NYTIRITDRINFD 307
              +++ + I+  
Sbjct: 313 QRALQVKELIDHS 325


>gi|322833203|ref|YP_004213230.1| flagellar motor switch protein FliM [Rahnella sp. Y9602]
 gi|321168404|gb|ADW74103.1| flagellar motor switch protein FliM [Rahnella sp. Y9602]
          Length = 340

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 97/304 (31%), Gaps = 12/304 (3%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P    R+  +      I      +   + +         +    DI+  + +   + 
Sbjct: 42  PFDPTTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGAIKIQPYH 95

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       +   L           + +LV   ++NL G       ++  R  +  E
Sbjct: 96  DFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 155

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ KR +           S   + S       ++     N     N+ V T   ++ I 
Sbjct: 156 QRVIKRMLRLALDAYEDAWSGVYKLSVEYVR-AELQIKFTNITSSPNDIVVTTPFHVEIG 214

Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
            ++  F + IP   +++     L+      S N+     +    +  Q  + +       
Sbjct: 215 ALSGDFNICIPFS-MIEPLRELLTNPPVENSRNEESQWRENLVHQVQQSELELVANFVEI 273

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              L  ++ LK G V+P         I   +G  + + + G + + Y +R+   IN    
Sbjct: 274 PLRLSQILKLKPGDVLPIEKP--DRLIAHVDGVPVLTSQYGTLNEQYALRVEHLINPILN 331

Query: 310 SLKN 313
           SL  
Sbjct: 332 SLDE 335


>gi|156933435|ref|YP_001437351.1| flagellar motor switch protein FliM [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531689|gb|ABU76515.1| hypothetical protein ESA_01253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 334

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 33  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           S +LV   ++NL G       ++  R  +
Sbjct: 87  PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 147 HTEQRVINRMLKLALEAYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S  + ++  D   R+     + +     
Sbjct: 206 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQNWRDTLVRQVQHSELELIANFA 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P    ++    +  +G  + + + G V   Y +R+   IN 
Sbjct: 266 EIPLRLSKILKLKPGDVLPIDKPDRILVHV--DGVPVLTSQYGTVNGQYALRVEHLINP 322


>gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           K601]
 gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           K601]
          Length = 334

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    +IS  +    +++  +        F+  ++     +  I C
Sbjct: 59  ERFARNFRIGLFNMIRRSPEISVGTVGVQRYNAFLRELVVPTNFNIVAIRPLRGSGLIVC 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +L+  +++ L G   +   ++  R  S  E ++ +R +  I     +          +
Sbjct: 119 EPSLLFGIIDTLYGGVGKLQTRIEGRDFSATELRVIQRLVNLICEEYKKAWQGIYPLELS 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
            +   ++     N     +E V +    + I +++ +  + +P  TL     +  SS Q 
Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSVQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            +       +    R+     V +   +     T++ ++ +K G  I      +  A  S
Sbjct: 237 DAIEVDRRWVKVLTREIQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIRA--S 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302
             G  ++ C+ G     Y IRI  
Sbjct: 295 IEGVPVFECQYGTHNAKYAIRIEQ 318


>gi|50120652|ref|YP_049819.1| flagellar motor switch protein FliM [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611178|emb|CAG74624.1| flagellar motor switch protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 337

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+    +   +     +       +   L           
Sbjct: 60  ERFARQFRMSLFNLLRRSPDITVGGIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S +LV   ++NL G       ++  R  +  E+++ KR +        +  +   +    
Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217
                ++     N     N+ V T   ++ I ++   F + IP   +++     L+    
Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S  + +   D  A++     + +          L  ++ L+ G V+P    +K  A +
Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + + + G +   Y +R+   IN    SL N
Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331


>gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 337

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 25/273 (9%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    D+S       KF+  +HS       +            I  
Sbjct: 59  ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++N  G       ++  R  +  E ++ +  + Q  A L +  +   +    
Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175

Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQE-TLLKTTLI 212
                D +Y+    N          E+V     ++ +E          P    +L     
Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGRR----DPHHPAVLDAGAD 226

Query: 213 SLSSQN--KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +++   +S+    D         +     V + + +  K+ +L+ +  LKIG ++P  
Sbjct: 227 PRTARRRHQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPID 286

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                   L      +++ E G    N  ++IT
Sbjct: 287 LPA--QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317


>gi|26248214|ref|NP_754254.1| flagellar motor switch protein FliM [Escherichia coli CFT073]
 gi|91211163|ref|YP_541149.1| flagellar motor switch protein FliM [Escherichia coli UTI89]
 gi|110642051|ref|YP_669781.1| flagellar motor switch protein FliM [Escherichia coli 536]
 gi|117624085|ref|YP_852998.1| flagellar motor switch protein FliM [Escherichia coli APEC O1]
 gi|237705904|ref|ZP_04536385.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA]
 gi|331642566|ref|ZP_08343701.1| flagellar motor switch protein FliM [Escherichia coli H736]
 gi|331647539|ref|ZP_08348631.1| flagellar motor switch protein FliM [Escherichia coli M605]
 gi|331653357|ref|ZP_08354362.1| flagellar motor switch protein FliM [Escherichia coli M718]
 gi|331673458|ref|ZP_08374226.1| flagellar motor switch protein FliM [Escherichia coli TA280]
 gi|331677827|ref|ZP_08378502.1| flagellar motor switch protein FliM [Escherichia coli H591]
 gi|332278888|ref|ZP_08391301.1| flagellar motor switch protein FliM [Shigella sp. D9]
 gi|26108618|gb|AAN80821.1|AE016762_74 Flagellar motor switch protein fliM [Escherichia coli CFT073]
 gi|91072737|gb|ABE07618.1| flagellar motor switch protein FliM [Escherichia coli UTI89]
 gi|110343643|gb|ABG69880.1| flagellar motor switch protein FliM [Escherichia coli 536]
 gi|115513209|gb|ABJ01284.1| Flagellar motor switch protein [Escherichia coli APEC O1]
 gi|226900661|gb|EEH86920.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA]
 gi|331039364|gb|EGI11584.1| flagellar motor switch protein FliM [Escherichia coli H736]
 gi|331043263|gb|EGI15401.1| flagellar motor switch protein FliM [Escherichia coli M605]
 gi|331049455|gb|EGI21527.1| flagellar motor switch protein FliM [Escherichia coli M718]
 gi|331069656|gb|EGI41043.1| flagellar motor switch protein FliM [Escherichia coli TA280]
 gi|331074287|gb|EGI45607.1| flagellar motor switch protein FliM [Escherichia coli H591]
 gi|332101240|gb|EGJ04586.1| flagellar motor switch protein FliM [Shigella sp. D9]
          Length = 349

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 45  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 99  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 217

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 336 INPILNSLNEEQPK 349


>gi|237731993|ref|ZP_04562474.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2]
 gi|226907532|gb|EEH93450.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2]
          Length = 349

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 10/318 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +   +  P  P    R+  +    + +E I+      ++  L  + +       DI
Sbjct: 41  ISGIAKESDIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDI 94

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L        +  S +LV   ++NL G       
Sbjct: 95  TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 154

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  R +       +                 ++     N     N+ 
Sbjct: 155 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 213

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239
           V     ++ I N+   F + +P   +     L+       S N+ ++  +   R+     
Sbjct: 214 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 273

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +          L  ++ LK G V+P         I   +G  + + + G V   Y +R
Sbjct: 274 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 331

Query: 300 ITDRINFDQKSLKNFLHK 317
           +   IN    SL     K
Sbjct: 332 VEHLINPILNSLNEEQPK 349


>gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans
           BC]
 gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
           BC]
          Length = 334

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    +IS  +    +++  +        F+  ++     +  I C
Sbjct: 59  ERFARNFRIGLFNMIRRSPEISVGTVAVQRYNAFLRELVVPTNFNIVAIRPLRGSGLIVC 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +L+  +++ L G   +   ++  R  S  E ++ +R +  I     +          +
Sbjct: 119 EPSLLFGIIDTLYGGVGKLQTRIEGRDFSATELRVIQRLVNLICEEYKKAWQGIYPLELS 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
            +   ++     N     +E V +    + I +++ +  + +P  TL     +  SS Q 
Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSVQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            +       +    R+     V +   +     T++ ++ +K G  I      +  A  S
Sbjct: 237 DAIEVDRRWVKVLTREIQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIRA--S 294

Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302
             G  ++ C+ G     Y IRI  
Sbjct: 295 IEGVPVFECQYGTHNAKYAIRIEQ 318


>gi|253688959|ref|YP_003018149.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755537|gb|ACT13613.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 337

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+    +   +     +       +   L           
Sbjct: 60  ERFARQFRMGLFNLLRRSPDITVGGIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S +LV   ++NL G       ++  R  +  E+++ KR +        +  +   +    
Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217
                ++     N     N+ V T   ++ I ++   F + IP   +++     L+    
Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S  + +   D  A++     + +          L  ++ L+ G V+P    +K  A +
Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIIAHV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + + + G +   Y +R+   IN    SL N
Sbjct: 298 --DGVPVMTSQYGTLNGQYALRVEHLINPILNSLDN 331


>gi|281601385|gb|ADA74369.1| Flagellar motor switch protein FliM [Shigella flexneri 2002017]
          Length = 349

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 45  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 99  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 217

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335

Query: 304 INF 306
           IN 
Sbjct: 336 INP 338


>gi|291613061|ref|YP_003523218.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus
           ES-1]
 gi|291583173|gb|ADE10831.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus
           ES-1]
          Length = 333

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 13/292 (4%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            R+    G   T+E I+     L++  L            +IS    +  KFS  I +  
Sbjct: 43  ERIVR--GRMPTMEIINERFARLFRISLYNFIHRSS----EISVGPVRVMKFSEFIRNLP 96

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
                +   +     +       NLV  ++++L G       ++  R  +  E ++ ++ 
Sbjct: 97  VPANLNLVQVKPLRGSALFIFDPNLVFMVVDSLFGGDGRFHTRVEGREFTQTEHRIIQKL 156

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +  +     +   T Q+              +       NE V      +    V  S  
Sbjct: 157 LDVVFQTYGKSWETVQKLDFEFIRSEV--NPQFANIATPNEVVVVTTFEVEFTGVGGSIH 214

Query: 199 LIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
           + +P   +++     L S  + +     +  +   +R+     V +   +    T ++ V
Sbjct: 215 ICMPYA-MIEPIREMLYSTMQGDHVIADKRWLHMLSRQIQLAEVELTAVLGHATTNVEHV 273

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + ++ G +IP    +    ++  +   +  C+ G     Y +++   +  + 
Sbjct: 274 LKMRAGDIIPLEVEDTIQVLV--DTVPVMECKYGSSNGQYALKVEKMLATEH 323


>gi|323174676|gb|EFZ60296.1| flagellar motor switch protein FliM [Escherichia coli LT-68]
          Length = 334

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 99/303 (32%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +    +T+E I+      ++  L  + +       DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRER--LQTLEIINERFARHFRMGLFNLLR----RSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|170769401|ref|ZP_02903854.1| flagellar motor switch protein FliM [Escherichia albertii TW07627]
 gi|170121725|gb|EDS90656.1| flagellar motor switch protein FliM [Escherichia albertii TW07627]
          Length = 334

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 97/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  STESDIRPYDPNTQQRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +         +       ++     N     N+ V   
Sbjct: 144 REFTDTEQRVINRMLKLALEGYSDAWKAINPLNVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+    Q  S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPQENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK   V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPSDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|332095507|gb|EGJ00523.1| flagellar motor switch protein FliM [Shigella dysenteriae 155-74]
          Length = 334

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  K      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRKRLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|283832660|ref|ZP_06352401.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC
           29220]
 gi|291072334|gb|EFE10443.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC
           29220]
          Length = 334

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 10/318 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +   +  P  P    R+  +    + +E I+      ++  L  + +       DI
Sbjct: 26  ISGIAKESDIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L        +  S +LV   ++NL G       
Sbjct: 80  TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  R +       +                 ++     N     N+ 
Sbjct: 140 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239
           V     ++ I N+   F + +P   +     L+       S N+ ++  +   R+     
Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 258

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +          L  ++ LK G V+P         I   +G  + + + G V   Y +R
Sbjct: 259 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 316

Query: 300 ITDRINFDQKSLKNFLHK 317
           +   IN    SL     K
Sbjct: 317 VEHLINPILNSLNEEQPK 334


>gi|218549270|ref|YP_002383061.1| flagellar motor switch protein FliM [Escherichia fergusonii ATCC
           35469]
 gi|218356811|emb|CAQ89439.1| flagellar motor switching and energizing component [Escherichia
           fergusonii ATCC 35469]
 gi|324114212|gb|EGC08185.1| flagellar motor switch protein FliM [Escherichia fergusonii B253]
 gi|325497687|gb|EGC95546.1| flagellar motor switch protein FliM [Escherichia fergusonii ECD227]
          Length = 334

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 10/318 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +   +  P  P    R+  +      I      +   + +         +    DI
Sbjct: 26  ISGITNESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDI 79

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +  + +   +     +       +   L        +  S  LV   ++NL G       
Sbjct: 80  TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPALVFIAVDNLFGGDGRFPT 139

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
           ++  R  +  E+++  R +                         ++     N     N+ 
Sbjct: 140 KVEGREFTHTEQRVINRMLKLALEGYRDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 198

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239
           V     ++ I N+   F + +P   +     L+       S ++ ++  +   R+     
Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRNNLVRQVQHSQ 258

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +          L  ++ LK G V+P         I   +G  + + + G +   Y +R
Sbjct: 259 LELVANFAEISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316

Query: 300 ITDRINFDQKSLKNFLHK 317
           I   IN    SL     K
Sbjct: 317 IEHLINPILNSLNEEQPK 334


>gi|300994270|ref|ZP_07180822.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1]
 gi|300304935|gb|EFJ59455.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1]
          Length = 334

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|227328351|ref|ZP_03832375.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 337

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 60  ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S +LV   ++NL G       ++  R  +  E+++ KR +        +  +   +    
Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217
                ++     N     N+ V T   ++ I ++   F + IP   +++     L+    
Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S  + +   D  A++     + +          L  ++ L+ G V+P    +K  A +
Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + + + G +   Y +R+   IN    SL N
Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331


>gi|227112534|ref|ZP_03826190.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 337

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 60  ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S +LV   ++NL G       ++  R  +  E+++ KR +        +  +   +    
Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217
                ++     N     N+ V T   ++ I ++   F + IP   +++     L+    
Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S  + +   D  A++     + +          L  ++ L+ G V+P    +K  A +
Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + + + G +   Y +R+   IN    SL N
Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331


>gi|15831938|ref|NP_310711.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           Sakai]
 gi|82543593|ref|YP_407540.1| flagellar motor switch protein FliM [Shigella boydii Sb227]
 gi|157156914|ref|YP_001463247.1| flagellar motor switch protein FliM [Escherichia coli E24377A]
 gi|157161416|ref|YP_001458734.1| flagellar motor switch protein FliM [Escherichia coli HS]
 gi|168751874|ref|ZP_02776896.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758259|ref|ZP_02783266.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764429|ref|ZP_02789436.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771552|ref|ZP_02796559.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777372|ref|ZP_02802379.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783342|ref|ZP_02808349.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790295|ref|ZP_02815302.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC869]
 gi|168802292|ref|ZP_02827299.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC508]
 gi|170019722|ref|YP_001724676.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739]
 gi|170684212|ref|YP_001743300.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5]
 gi|188494069|ref|ZP_03001339.1| flagellar motor switch protein FliM [Escherichia coli 53638]
 gi|191168308|ref|ZP_03030101.1| flagellar motor switch protein FliM [Escherichia coli B7A]
 gi|191173313|ref|ZP_03034843.1| flagellar motor switch protein FliM [Escherichia coli F11]
 gi|193071140|ref|ZP_03052064.1| flagellar motor switch protein FliM [Escherichia coli E110019]
 gi|194429931|ref|ZP_03062441.1| flagellar motor switch protein FliM [Escherichia coli B171]
 gi|194439587|ref|ZP_03071660.1| flagellar motor switch protein FliM [Escherichia coli 101-1]
 gi|195939251|ref|ZP_03084633.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810354|ref|ZP_03252230.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816529|ref|ZP_03257649.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818778|ref|ZP_03259098.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396357|ref|YP_002271061.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919367|ref|YP_002293451.1| flagellar motor switch protein FliM [Escherichia coli SE11]
 gi|215487145|ref|YP_002329576.1| flagellar motor switch protein FliM [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217328609|ref|ZP_03444690.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554525|ref|YP_002387438.1| flagellar motor switch protein FliM [Escherichia coli IAI1]
 gi|218558802|ref|YP_002391715.1| flagellar motor switch protein FliM [Escherichia coli S88]
 gi|218689940|ref|YP_002398152.1| flagellar motor switch protein FliM [Escherichia coli ED1a]
 gi|218695550|ref|YP_002403217.1| flagellar motor switch protein FliM [Escherichia coli 55989]
 gi|218699494|ref|YP_002407123.1| flagellar motor switch protein FliM [Escherichia coli IAI39]
 gi|218705438|ref|YP_002412957.1| flagellar motor switch protein FliM [Escherichia coli UMN026]
 gi|227885626|ref|ZP_04003431.1| flagellar motor switch protein FliM [Escherichia coli 83972]
 gi|254793595|ref|YP_003078432.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017862|ref|ZP_05431727.1| flagellar motor switch protein FliM [Shigella sp. D9]
 gi|256022397|ref|ZP_05436262.1| flagellar motor switch protein FliM [Escherichia sp. 4_1_40B]
 gi|260844344|ref|YP_003222122.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O103:H2 str. 12009]
 gi|260855920|ref|YP_003229811.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O26:H11 str. 11368]
 gi|260868538|ref|YP_003234940.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O111:H- str. 11128]
 gi|261227560|ref|ZP_05941841.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254616|ref|ZP_05947149.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283122|ref|YP_003499940.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405428|ref|ZP_06649420.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412]
 gi|293410301|ref|ZP_06653877.1| flagellar motor switch protein FliM [Escherichia coli B354]
 gi|293415255|ref|ZP_06657898.1| flagellar motor switch protein FliM [Escherichia coli B185]
 gi|293446325|ref|ZP_06662747.1| flagellar motor switch protein FliM [Escherichia coli B088]
 gi|298381072|ref|ZP_06990671.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302]
 gi|300818635|ref|ZP_07098843.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1]
 gi|300822285|ref|ZP_07102426.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7]
 gi|300899202|ref|ZP_07117478.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1]
 gi|300904835|ref|ZP_07122661.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1]
 gi|300920164|ref|ZP_07136614.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1]
 gi|300923892|ref|ZP_07139907.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1]
 gi|300931158|ref|ZP_07146505.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1]
 gi|300940400|ref|ZP_07154985.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1]
 gi|300951570|ref|ZP_07165403.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1]
 gi|300956539|ref|ZP_07168821.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1]
 gi|301018205|ref|ZP_07182720.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1]
 gi|301305288|ref|ZP_07211385.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1]
 gi|301327732|ref|ZP_07220937.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1]
 gi|301644596|ref|ZP_07244585.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1]
 gi|306814232|ref|ZP_07448398.1| flagellar motor switch protein FliM [Escherichia coli NC101]
 gi|307138612|ref|ZP_07497968.1| flagellar motor switch protein FliM [Escherichia coli H736]
 gi|307312469|ref|ZP_07592103.1| flagellar motor switch protein FliM [Escherichia coli W]
 gi|309795948|ref|ZP_07690361.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7]
 gi|312967142|ref|ZP_07781360.1| flagellar motor switch protein FliM [Escherichia coli 2362-75]
 gi|312973838|ref|ZP_07788010.1| flagellar motor switch protein FliM [Escherichia coli 1827-70]
 gi|331657991|ref|ZP_08358953.1| flagellar motor switch protein FliM [Escherichia coli TA206]
 gi|331663441|ref|ZP_08364351.1| flagellar motor switch protein FliM [Escherichia coli TA143]
 gi|331668636|ref|ZP_08369484.1| flagellar motor switch protein FliM [Escherichia coli TA271]
 gi|331683497|ref|ZP_08384098.1| flagellar motor switch protein FliM [Escherichia coli H299]
 gi|13362152|dbj|BAB36107.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           Sakai]
 gi|81245004|gb|ABB65712.1| FliM [Shigella boydii Sb227]
 gi|157067096|gb|ABV06351.1| flagellar motor switch protein FliM [Escherichia coli HS]
 gi|157078944|gb|ABV18652.1| flagellar motor switch protein FliM [Escherichia coli E24377A]
 gi|169754650|gb|ACA77349.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739]
 gi|170521930|gb|ACB20108.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5]
 gi|187767405|gb|EDU31249.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014186|gb|EDU52308.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489268|gb|EDU64371.1| flagellar motor switch protein FliM [Escherichia coli 53638]
 gi|188999277|gb|EDU68263.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354878|gb|EDU73297.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359725|gb|EDU78144.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365559|gb|EDU83975.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370212|gb|EDU88628.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC869]
 gi|189375729|gb|EDU94145.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC508]
 gi|190901680|gb|EDV61436.1| flagellar motor switch protein FliM [Escherichia coli B7A]
 gi|190906430|gb|EDV66039.1| flagellar motor switch protein FliM [Escherichia coli F11]
 gi|192955535|gb|EDV86014.1| flagellar motor switch protein FliM [Escherichia coli E110019]
 gi|194412020|gb|EDX28332.1| flagellar motor switch protein FliM [Escherichia coli B171]
 gi|194421496|gb|EDX37510.1| flagellar motor switch protein FliM [Escherichia coli 101-1]
 gi|208724870|gb|EDZ74577.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730872|gb|EDZ79561.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738901|gb|EDZ86583.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157757|gb|ACI35190.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766818|gb|ACI81721.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766820|gb|ACI81722.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766822|gb|ACI81723.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766824|gb|ACI81724.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209766826|gb|ACI81725.1| flagellar motor switch protein FliM [Escherichia coli]
 gi|209912626|dbj|BAG77700.1| flagellar motor switch protein FliM [Escherichia coli SE11]
 gi|215265217|emb|CAS09607.1| flagellar motor switching and energizing component [Escherichia
           coli O127:H6 str. E2348/69]
 gi|217317956|gb|EEC26383.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352282|emb|CAU98039.1| flagellar motor switching and energizing component [Escherichia
           coli 55989]
 gi|218361293|emb|CAQ98877.1| flagellar motor switching and energizing component [Escherichia
           coli IAI1]
 gi|218365571|emb|CAR03298.1| flagellar motor switching and energizing component [Escherichia
           coli S88]
 gi|218369480|emb|CAR17245.1| flagellar motor switching and energizing component [Escherichia
           coli IAI39]
 gi|218427504|emb|CAR08399.2| flagellar motor switching and energizing component [Escherichia
           coli ED1a]
 gi|218432535|emb|CAR13428.1| flagellar motor switching and energizing component [Escherichia
           coli UMN026]
 gi|222033684|emb|CAP76425.1| flagellar motor switch protein fliM [Escherichia coli LF82]
 gi|227837199|gb|EEJ47665.1| flagellar motor switch protein FliM [Escherichia coli 83972]
 gi|254592995|gb|ACT72356.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754569|dbj|BAI26071.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O26:H11 str. 11368]
 gi|257759491|dbj|BAI30988.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O103:H2 str. 12009]
 gi|257764894|dbj|BAI36389.1| flagellar motor switching and energizing component FliM
           [Escherichia coli O111:H- str. 11128]
 gi|281179007|dbj|BAI55337.1| flagellar motor switch protein FliM [Escherichia coli SE15]
 gi|284921853|emb|CBG34928.1| flagellar motor switch protein FliM [Escherichia coli 042]
 gi|290762995|gb|ADD56956.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323155|gb|EFE62583.1| flagellar motor switch protein FliM [Escherichia coli B088]
 gi|291427636|gb|EFF00663.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412]
 gi|291432903|gb|EFF05882.1| flagellar motor switch protein FliM [Escherichia coli B185]
 gi|291470769|gb|EFF13253.1| flagellar motor switch protein FliM [Escherichia coli B354]
 gi|294492735|gb|ADE91491.1| flagellar motor switch protein FliM [Escherichia coli IHE3034]
 gi|298278514|gb|EFI20028.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302]
 gi|300316639|gb|EFJ66423.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1]
 gi|300357183|gb|EFJ73053.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1]
 gi|300399792|gb|EFJ83330.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1]
 gi|300403262|gb|EFJ86800.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1]
 gi|300412821|gb|EFJ96131.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1]
 gi|300419855|gb|EFK03166.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1]
 gi|300449197|gb|EFK12817.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1]
 gi|300454794|gb|EFK18287.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1]
 gi|300461015|gb|EFK24508.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1]
 gi|300525168|gb|EFK46237.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7]
 gi|300528807|gb|EFK49869.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1]
 gi|300839494|gb|EFK67254.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1]
 gi|300845732|gb|EFK73492.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1]
 gi|301077071|gb|EFK91877.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1]
 gi|305852391|gb|EFM52842.1| flagellar motor switch protein FliM [Escherichia coli NC101]
 gi|306907640|gb|EFN38143.1| flagellar motor switch protein FliM [Escherichia coli W]
 gi|307553958|gb|ADN46733.1| flagellar motor switch protein FliM [Escherichia coli ABU 83972]
 gi|307626579|gb|ADN70883.1| flagellar motor switch protein FliM [Escherichia coli UM146]
 gi|308120398|gb|EFO57660.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7]
 gi|309702234|emb|CBJ01551.1| flagellar motor switch protein FliM [Escherichia coli ETEC H10407]
 gi|310332433|gb|EFP99668.1| flagellar motor switch protein FliM [Escherichia coli 1827-70]
 gi|312288606|gb|EFR16508.1| flagellar motor switch protein FliM [Escherichia coli 2362-75]
 gi|312946538|gb|ADR27365.1| flagellar motor switch protein FliM [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315061245|gb|ADT75572.1| flagellar motor switching and energizing component [Escherichia
           coli W]
 gi|315257223|gb|EFU37191.1| flagellar motor switch protein FliM [Escherichia coli MS 85-1]
 gi|315286659|gb|EFU46092.1| flagellar motor switch protein FliM [Escherichia coli MS 110-3]
 gi|315290262|gb|EFU49640.1| flagellar motor switch protein FliM [Escherichia coli MS 153-1]
 gi|315296479|gb|EFU55776.1| flagellar motor switch protein FliM [Escherichia coli MS 16-3]
 gi|320175465|gb|EFW50564.1| Flagellar motor switch protein FliM [Shigella dysenteriae CDC
           74-1112]
 gi|320184483|gb|EFW59287.1| Flagellar motor switch protein FliM [Shigella flexneri CDC 796-83]
 gi|320191919|gb|EFW66566.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194342|gb|EFW68973.1| Flagellar motor switch protein FliM [Escherichia coli WV_060327]
 gi|320198635|gb|EFW73235.1| Flagellar motor switch protein FliM [Escherichia coli EC4100B]
 gi|320641793|gb|EFX11181.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           G5101]
 gi|320647152|gb|EFX15985.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str.
           493-89]
 gi|320652436|gb|EFX20734.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str.
           H 2687]
 gi|320658038|gb|EFX25800.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658610|gb|EFX26304.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668508|gb|EFX35335.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152724|gb|EFZ38996.1| flagellar motor switch protein FliM [Escherichia coli EPECa14]
 gi|323158576|gb|EFZ44590.1| flagellar motor switch protein FliM [Escherichia coli E128010]
 gi|323180802|gb|EFZ66342.1| flagellar motor switch protein FliM [Escherichia coli 1180]
 gi|323183929|gb|EFZ69316.1| flagellar motor switch protein FliM [Escherichia coli 1357]
 gi|323186821|gb|EFZ72141.1| flagellar motor switch protein FliM [Escherichia coli RN587/1]
 gi|323378178|gb|ADX50446.1| flagellar motor switch protein FliM [Escherichia coli KO11]
 gi|323937215|gb|EGB33495.1| flagellar motor switch protein FliM [Escherichia coli E1520]
 gi|323940396|gb|EGB36587.1| flagellar motor switch protein FliM [Escherichia coli E482]
 gi|323948351|gb|EGB44338.1| flagellar motor switch protein FliM [Escherichia coli H120]
 gi|323952438|gb|EGB48311.1| flagellar motor switch protein FliM [Escherichia coli H252]
 gi|323956341|gb|EGB52084.1| flagellar motor switch protein FliM [Escherichia coli H263]
 gi|323961989|gb|EGB57588.1| flagellar motor switch protein FliM [Escherichia coli H489]
 gi|323972755|gb|EGB67955.1| flagellar motor switch protein FliM [Escherichia coli TA007]
 gi|324005856|gb|EGB75075.1| flagellar motor switch protein FliM [Escherichia coli MS 57-2]
 gi|324013500|gb|EGB82719.1| flagellar motor switch protein FliM [Escherichia coli MS 60-1]
 gi|324018854|gb|EGB88073.1| flagellar motor switch protein FliM [Escherichia coli MS 117-3]
 gi|324118994|gb|EGC12883.1| flagellar motor switch protein FliM [Escherichia coli E1167]
 gi|326342355|gb|EGD66136.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           1044]
 gi|326344860|gb|EGD68607.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
           1125]
 gi|330911751|gb|EGH40261.1| flagellar motor switch protein FliM [Escherichia coli AA86]
 gi|331056239|gb|EGI28248.1| flagellar motor switch protein FliM [Escherichia coli TA206]
 gi|331059240|gb|EGI31217.1| flagellar motor switch protein FliM [Escherichia coli TA143]
 gi|331063830|gb|EGI35741.1| flagellar motor switch protein FliM [Escherichia coli TA271]
 gi|331079712|gb|EGI50909.1| flagellar motor switch protein FliM [Escherichia coli H299]
 gi|332093098|gb|EGI98162.1| flagellar motor switch protein FliM [Shigella boydii 5216-82]
 gi|332096930|gb|EGJ01919.1| flagellar motor switch protein FliM [Shigella boydii 3594-74]
 gi|332343671|gb|AEE57005.1| flagellar motor switch protein FliM [Escherichia coli UMNK88]
          Length = 334

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|260598454|ref|YP_003211025.1| flagellar motor switch protein FliM [Cronobacter turicensis z3032]
 gi|260217631|emb|CBA31927.1| Flagellar motor switch protein fliM [Cronobacter turicensis z3032]
          Length = 334

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 96/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 33  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           S +LV   ++NL G       ++  R  +
Sbjct: 87  PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 147 HTEQRVINRMLKLALEAYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S  + +   D   R+     + +     
Sbjct: 206 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQHWRDNLVRQVQHSELELIANFA 265

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P    ++    +  +G  + + + G V   Y +R+   IN 
Sbjct: 266 EIPLRLSKILKLKPGDVLPIEKPDRILVHV--DGVPVLTSQYGTVSGQYALRVEHLINP 322


>gi|157145261|ref|YP_001452580.1| flagellar motor switch protein FliM [Citrobacter koseri ATCC
           BAA-895]
 gi|157082466|gb|ABV12144.1| hypothetical protein CKO_00998 [Citrobacter koseri ATCC BAA-895]
          Length = 334

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 100/310 (32%), Gaps = 10/310 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN  
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPI 324

Query: 308 QKSLKNFLHK 317
             SL     K
Sbjct: 325 LNSLNEEQPK 334


>gi|193066386|ref|ZP_03047434.1| flagellar motor switch protein FliM [Escherichia coli E22]
 gi|192925971|gb|EDV80617.1| flagellar motor switch protein FliM [Escherichia coli E22]
          Length = 334

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKALNPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|311279113|ref|YP_003941344.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1]
 gi|308748308|gb|ADO48060.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1]
          Length = 334

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEAYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     + ++     S ++ ++  +   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRSEDQNWRENLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 267 DISLRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323


>gi|291617855|ref|YP_003520597.1| FliM [Pantoea ananatis LMG 20103]
 gi|291152885|gb|ADD77469.1| FliM [Pantoea ananatis LMG 20103]
 gi|327394272|dbj|BAK11694.1| flagellar motor switch protein FliM [Pantoea ananatis AJ13355]
          Length = 335

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +      +  P  P    R+  +      I      +   + +         +    DIS
Sbjct: 27  KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMALFNLLRRSPDIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 81  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +R +       +                 ++     N     N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240
                 + I N+   F + IP   +     + ++     S ++     D   ++     +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLREMLVNPPLENSRSEDTHWRDNLVKQVQHSEL 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  V+ LK G V+P    E    I   +G  + + + G +   Y +R+
Sbjct: 260 ELIAHFAETSLRLSRVLQLKPGDVLPIEKPE--RIIAHVDGVPVLTSQYGTLNGQYALRV 317

Query: 301 TDRINF 306
              IN 
Sbjct: 318 EHLINP 323


>gi|194434971|ref|ZP_03067214.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012]
 gi|194416806|gb|EDX32932.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012]
          Length = 334

 Score =  152 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|30063384|ref|NP_837555.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
           2457T]
 gi|56480007|ref|NP_707830.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301]
 gi|30041636|gb|AAP17364.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
           2457T]
 gi|56383558|gb|AAN43537.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301]
 gi|313650167|gb|EFS14580.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
           2457T]
 gi|332757511|gb|EGJ87846.1| flagellar motor switch protein FliM [Shigella flexneri K-671]
 gi|333017577|gb|EGK36889.1| flagellar motor switch protein FliM [Shigella flexneri K-304]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|320182738|gb|EFW57622.1| Flagellar motor switch protein FliM [Shigella boydii ATCC 9905]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|332756101|gb|EGJ86454.1| flagellar motor switch protein FliM [Shigella flexneri 4343-70]
 gi|332757253|gb|EGJ87590.1| flagellar motor switch protein FliM [Shigella flexneri 2747-71]
 gi|332766683|gb|EGJ96887.1| flagellar motor switch protein FliM [Shigella flexneri 2930-71]
 gi|333003346|gb|EGK22892.1| flagellar motor switch protein FliM [Shigella flexneri K-218]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|323968361|gb|EGB63768.1| flagellar motor switch protein FliM [Escherichia coli M863]
 gi|323977874|gb|EGB72960.1| flagellar motor switch protein FliM [Escherichia coli TW10509]
 gi|327253077|gb|EGE64731.1| flagellar motor switch protein FliM [Escherichia coli STEC_7v]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S N+ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G +   Y +RI   IN 
Sbjct: 267 DISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323


>gi|16760920|ref|NP_456537.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141388|ref|NP_804730.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213424998|ref|ZP_03357748.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584776|ref|ZP_03366602.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213855271|ref|ZP_03383511.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829468|ref|ZP_06547080.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298898|pir||AI0752 flagellar motor switch protein FliM [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503217|emb|CAD05724.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137015|gb|AAO68579.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323


>gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771]
          Length = 169

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           M       +   + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV +
Sbjct: 1   MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTV 60

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           +Y  C+ G  +H+I     N     A+L +WS N  + C N  VITL+            
Sbjct: 61  NYLGCEIGYKNHLIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDR 120

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKN 172
           +  +R LS +E  LA     +I+     C +  Q +     E F    +  + 
Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAK----CCARGQRARRFRTEPFAPHAHDARP 169


>gi|161502902|ref|YP_001570014.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864249|gb|ABX20872.1| hypothetical protein SARI_00961 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323


>gi|16765314|ref|NP_460929.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62180551|ref|YP_216968.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613455|ref|YP_001587420.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552791|ref|ZP_02346542.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167993551|ref|ZP_02574645.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234149|ref|ZP_02659207.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239216|ref|ZP_02664274.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244827|ref|ZP_02669759.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259737|ref|ZP_02681710.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462482|ref|ZP_02696413.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823019|ref|ZP_02835019.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444199|ref|YP_002041241.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451006|ref|YP_002046027.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737897|ref|YP_002115010.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249640|ref|YP_002146047.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265099|ref|ZP_03165173.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245200|ref|YP_002215110.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389660|ref|ZP_03216271.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931068|ref|ZP_03221894.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205352330|ref|YP_002226131.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856511|ref|YP_002243162.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224583525|ref|YP_002637323.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912451|ref|ZP_04656288.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|120346|sp|P26418|FLIM_SALTY RecName: Full=Flagellar motor switch protein FliM
 gi|154035|gb|AAA27104.1| fliM flagellar switch protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420511|gb|AAL20888.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128184|gb|AAX65887.1| flagellar biosynthesis, component of motor switch and energizing
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362819|gb|ABX66587.1| hypothetical protein SPAB_01172 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402862|gb|ACF63084.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409310|gb|ACF69529.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194713399|gb|ACF92620.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634275|gb|EDX52627.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213343|gb|ACH50740.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197243354|gb|EDY25974.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288083|gb|EDY27470.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939716|gb|ACH77049.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602105|gb|EDZ00651.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320112|gb|EDZ05317.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205272111|emb|CAR36964.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322661|gb|EDZ10500.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328413|gb|EDZ15177.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331867|gb|EDZ18631.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336350|gb|EDZ23114.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340670|gb|EDZ27434.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350615|gb|EDZ37246.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708314|emb|CAR32617.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468052|gb|ACN45882.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247142|emb|CBG24965.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993965|gb|ACY88850.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158490|emb|CBW18000.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912966|dbj|BAJ36940.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085405|emb|CBY95186.1| Flagellar motor switch protein fliM [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224621|gb|EFX49684.1| Flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322616969|gb|EFY13877.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618208|gb|EFY15100.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625879|gb|EFY22698.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626331|gb|EFY23141.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632746|gb|EFY29491.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639088|gb|EFY35781.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640404|gb|EFY37060.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647235|gb|EFY43734.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649917|gb|EFY46338.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655525|gb|EFY51833.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660303|gb|EFY56541.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662984|gb|EFY59191.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668169|gb|EFY64328.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674072|gb|EFY70166.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675576|gb|EFY71650.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683013|gb|EFY79029.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686707|gb|EFY82685.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715027|gb|EFZ06598.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130255|gb|ADX17685.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195405|gb|EFZ80585.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198067|gb|EFZ83184.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204461|gb|EFZ89467.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207551|gb|EFZ92499.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211010|gb|EFZ95870.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217536|gb|EGA02255.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220731|gb|EGA05175.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226682|gb|EGA10879.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231558|gb|EGA15671.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236001|gb|EGA20080.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240571|gb|EGA24614.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245463|gb|EGA29463.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247581|gb|EGA31532.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253956|gb|EGA37780.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255516|gb|EGA39277.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262114|gb|EGA45677.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266237|gb|EGA49727.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270654|gb|EGA54095.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622858|gb|EGE29203.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326627380|gb|EGE33723.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988865|gb|AEF07848.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 334

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323


>gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 334

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +    +IS       ++S  +        F+  ++     +  + C
Sbjct: 59  ERFARNLRVGLFNFIRRSPEISVGPVVVQRYSAFLRELAVPTNFNIVAIRPLRGSGLVVC 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  +++ L G   +   ++  R  S  E+++  R +  I+    +           
Sbjct: 119 EPALVFGVIDTLYGGIGKFQTRIEGRDFSATEQRVINRLVDVITTEYKKAWKGIYPLELE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218
            +   ++     N     +E V + +  + I ++  +     P  TL     +  SS Q 
Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVISTSFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQG 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            S       ++   R+     V I   +     T++ ++ +K G  I      +  A + 
Sbjct: 237 DSIEVDRRWVNVLTREIQAAEVTIVAELARADATVEQLLGMKKGDFIELDRAPRIQATV- 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKN 313
            +G  I+ C+ G     Y IRI   +   DQ  L  
Sbjct: 296 -DGVPIFECQYGTHNSKYAIRIEKALRGNDQNWLGE 330


>gi|15802380|ref|NP_288406.1| flagellar motor switch protein FliM [Escherichia coli O157:H7
           EDL933]
 gi|12516052|gb|AAG56960.1|AE005417_2 flagellar biosynthesis, component of motor switch and energizing,
           enabling rotation and determining its direction
           [Escherichia coli O157:H7 str. EDL933]
          Length = 334

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 95/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+   
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGX 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|301029402|ref|ZP_07192496.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1]
 gi|299877706|gb|EFI85917.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1]
          Length = 334

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKQLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|238755314|ref|ZP_04616657.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473]
 gi|238706450|gb|EEP98824.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473]
          Length = 334

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRERLHALEI------INERFARHFRMGLFNLLRRSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L             +LV   ++NL G       ++  R  +
Sbjct: 87  PYHEFARNLPVPTNLNLVHLKPLRGTALFVFEPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +               +         +I     N     N+ V T   ++
Sbjct: 147 HTEQRVITRMLRLALDAYRDAWGAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L+      S  +  +  +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSNWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ LK G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 AEIPLRLSQILKLKPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|333003041|gb|EGK22595.1| flagellar motor switch protein FliM [Shigella flexneri VA-6]
          Length = 334

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G ++P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDILPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|317492415|ref|ZP_07950844.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919754|gb|EFV41084.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 337

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 105/299 (35%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 36  DVRPYDPTTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAVKIQ 89

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L+       +  + +LV   ++NL G       ++  R  +
Sbjct: 90  PYHEFARNLPVPTNLNLIHLNPLRGTALMVFAPSLVFMAVDNLFGGDGRFPTKVDGREFT 149

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ KR +           S   +         +I     N     N+ V T    +
Sbjct: 150 HTEQRVIKRMLRLALDAYRDAWSAIYKLEVEYVR-SEIQVKFTNITTSPNDIVVTTPFTV 208

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRIN 247
            +  ++  F + IP   +     + ++   ++  Q +    D  +++     + +     
Sbjct: 209 EVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVANFV 268

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L +V+ L+ G V+P    EK   I + +G  + +C+ G     Y +R+   IN 
Sbjct: 269 DIPLRLSEVLKLQPGDVLPIEKPEK--LIANVDGVPVLTCQYGSQNGQYALRVERLINP 325


>gi|146312182|ref|YP_001177256.1| flagellar motor switch protein FliM [Enterobacter sp. 638]
 gi|145319058|gb|ABP61205.1| flagellar motor switch protein FliM [Enterobacter sp. 638]
          Length = 334

 Score =  152 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 98/311 (31%), Gaps = 10/311 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
               P  P    R+  +    + +E I+      ++  L  + +       DI+  + + 
Sbjct: 33  PEIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRI 86

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   L           S +LV   ++NL G       ++  R  
Sbjct: 87  QPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  R +       +                 ++     N     N+ V     +
Sbjct: 147 THTEQRVINRMLKLALESYSDAWKAIHPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFH 205

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           + I N+   F + +P   +     + ++     S N+ ++  +   R+     + +    
Sbjct: 206 VEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRNEDQNWRENLVRQVQHSQLELVASF 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +   + + + G V   Y +R+   IN 
Sbjct: 266 ADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDDVPVLTSQYGTVNGQYALRVEHLINP 323

Query: 307 DQKSLKNFLHK 317
              SL     K
Sbjct: 324 ILNSLNEEQPK 334


>gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
 gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
          Length = 331

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 111/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V I+  S     F   + S     + +   +
Sbjct: 54  RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+  ++L+ L+G S  +   + N  L+ +E K+      +    L +
Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L +        +  +   NE V  I++N  I   +    + IP   +L+
Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             + +LS     Q  ++  S +       +  Q  + +   + L   T++D +T+++G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAQLPLSVELGLTDITIEDFLTMQVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    + +   +L       ++ + G+ GK   I+I D +    +
Sbjct: 285 IQLDQKIEAPLLLKVGTLPKFTVQPGKKGKKLAIQIIDPLKGGDE 329


>gi|300717238|ref|YP_003742041.1| flagellar motor switch protein [Erwinia billingiae Eb661]
 gi|299063074|emb|CAX60194.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
          Length = 335

 Score =  152 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 100/300 (33%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      Y+  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRMVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +       ++                ++     N     N+ V T    +
Sbjct: 148 ATEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVITTPFQV 206

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
            I N+   F + IP   +++    +L       S  + ++  D   ++     + +    
Sbjct: 207 EIGNLVGEFNICIPFS-MIEPLRETLVNPPLENSRQEDQNWRDTLVKQVQHSELELIANF 265

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 +  ++ LK G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 266 GEVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323


>gi|56413111|ref|YP_150186.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362037|ref|YP_002141674.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127368|gb|AAV76874.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093514|emb|CAR58975.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 334

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGTIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323


>gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
 gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
          Length = 362

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 106/304 (34%), Gaps = 14/304 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
              +  +P       R+       + ++ +    G  +   L  + +      V++  TS
Sbjct: 44  RTREKVTPYDFKRPERV--GKEQMRALQSLHEGFGRNFGAALSALLRSI----VEVKLTS 97

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                +S  + S +    F+         N  +  + +++  +++ LLG   E  P    
Sbjct: 98  VDQLTYSEFVFSLENPTCFNLLRAEPLEGNLILDINPSILYPIIDRLLGGGKEAGPV-AR 156

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E +L  R        L            +++       L +      NE V  I
Sbjct: 157 RPLTEIELRLVSRITHLFLQELKHAWEGVLPLKLSVDRVESNPQLVQIV--PPNEVVVLI 214

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE----NQSEDLIDPFARKTYQLNV 240
           +  +T+ +V     L IP  ++ +     L+S N         +   I   +++  Q  V
Sbjct: 215 SFELTLNDVRGMINLCIPFNSIER-IGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKV 273

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   +     T  D++ L++G +I      +T   ++  G   +    G +  +  +RI
Sbjct: 274 ELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRI 333

Query: 301 TDRI 304
              I
Sbjct: 334 EQSI 337


>gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
           6192]
 gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM
           6578]
          Length = 341

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 11/285 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI  +  +   L    L    +      V +   S     +   I S          ++
Sbjct: 53  RTISIMHETFARLTTTSLSAQLRSL----VQVHVASVDQLTYEEFIRSIPNPTTIGIINM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +     +  ++++ L G   +      +R LS +E  + +  + +I   + +
Sbjct: 109 DPLKGSAILEIDPTITYSIIDRLFGGPGDGSVVPRDRDLSDIETTVMEGIMVRILGNMRE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   +  P L          +       E V  + +   + +V       IP  T ++
Sbjct: 169 AWSQVIDLRPRLGQIDTNPQFAQIV--PPTEMVVLVTLETKVGDVEGMMNFCIPYLT-IE 225

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+Q    +  +            +   + VN+   +      ++D+++++ G V
Sbjct: 226 PIISKLSAQYWYSSVRKGGTTENLAILKERISSVEVNLVVEVGSMNLKMRDILSIQKGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    R K   +L    +  + C  GRVGK   +++ ++I   Q+
Sbjct: 286 IMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLAVQLVEKIEESQE 330


>gi|194471387|ref|ZP_03077371.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457751|gb|EDX46590.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 334

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 98/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G V   Y++R+   IN 
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYSLRVEHLINP 323


>gi|261340410|ref|ZP_05968268.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC
           35316]
 gi|288317502|gb|EFC56440.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC
           35316]
          Length = 334

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           N  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  NIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  +   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 267 DVSMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINP 323


>gi|74312485|ref|YP_310904.1| flagellar motor switch protein FliM [Shigella sonnei Ss046]
 gi|73855962|gb|AAZ88669.1| flagellar motor switch protein FliM [Shigella sonnei Ss046]
 gi|323168934|gb|EFZ54614.1| flagellar motor switch protein FliM [Shigella sonnei 53G]
          Length = 334

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 97/314 (30%), Gaps = 10/314 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G +     ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGNGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ LK G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DGIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INFDQKSLKNFLHK 317
           IN    SL     K
Sbjct: 321 INPILNSLNEEQPK 334


>gi|329298601|ref|ZP_08255937.1| flagellar motor switch protein FliM [Plautia stali symbiont]
          Length = 269

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 81/254 (31%), Gaps = 4/254 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +    DIS  + +   +     +       +   L        +  S +LV   ++NL G
Sbjct: 7   LRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLQPLRGTALVVFSPSLVFIAVDNLFG 66

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E+++ +R +       +                 ++     N 
Sbjct: 67  GDGRFPTKVEGREFTHTEQRVIRRMLKLALEGYSDAWKAIYPLEVEYVR-SEMQVKFINI 125

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFA 232
               N+ V      + I N+   F + IP   +     L+       S  +     D   
Sbjct: 126 TTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLV 185

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++     + +          L  ++ LK+G V+P         I   +G  + + + G +
Sbjct: 186 KQVQHSELELIAHFAETSLRLSRILQLKLGDVLPIEKP--DRIIAHVDGVPVLTSQYGTL 243

Query: 293 GKNYTIRITDRINF 306
              Y +R+  +IN 
Sbjct: 244 NGQYALRVEHQINP 257


>gi|283785715|ref|YP_003365580.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168]
 gi|282949169|emb|CBG88777.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168]
          Length = 334

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 98/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     + ++     S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ L+ G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 267 DIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323


>gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
           HD100]
 gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
           HD100]
          Length = 333

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 89/269 (33%), Gaps = 4/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +     I+ TS +  KF   I++       S     +   +     
Sbjct: 67  EKFMRAFRVSLSSALRKIASITLTSTEFLKFGEFINTLPMPTCMSVLRFGNLRGSALFVI 126

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + L   L+++  G +     ++  +  + +E  + ++ +      +    ++ ++   +
Sbjct: 127 ESKLAYALVDSFFGGADRPYTKIDGKDFTPIELSIVQKVVGLAINDMEMAWASIEKIGCS 186

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
                              + V     ++ +EN   +  ++IP  T+  +K  L +    
Sbjct: 187 FVRTEVNPQFVGIV--PPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQV 244

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              +   +        +  + ++ I   +   +  LKD++ LK+G VIP          +
Sbjct: 245 ETDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDV 304

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
           +  G   +    G       +++T  +  
Sbjct: 305 AVEGVRKFKGYYGIHHGTVAVQVTRPVEK 333


>gi|295098287|emb|CBK87377.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 334

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 10/310 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           N  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  NIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  +   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN  
Sbjct: 267 DISMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINPI 324

Query: 308 QKSLKNFLHK 317
             SL     K
Sbjct: 325 LNSLNEEQPK 334


>gi|294636877|ref|ZP_06715207.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685]
 gi|291089907|gb|EFE22468.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685]
          Length = 337

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 88/268 (32%), Gaps = 4/268 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L        +  
Sbjct: 61  ERFARQFRMGLFNLLRRSPDITVGAVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVF 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV   ++NL G       ++  R  +  E+++ +R +               +    
Sbjct: 121 EPSLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLEVE 180

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +I     N     N+ V T    + +  ++  F + IP   +     + ++   +
Sbjct: 181 YVR-SEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLE 239

Query: 220 SENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +  Q +    D  +++     + +          L DV+ L++G V+P         I +
Sbjct: 240 NSKQEDQHWRDTLSKQVQHSELELVANFVDIPLRLSDVLKLQVGDVLPIDRP--DRLIAN 297

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306
            +G  + +C+ G     Y +R+   IN 
Sbjct: 298 VDGVPVLTCQYGCYHGQYALRVEKMINP 325


>gi|16129892|ref|NP_416455.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89108777|ref|AP_002557.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081589|ref|YP_001730909.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901150|ref|YP_002926946.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253773106|ref|YP_003035937.1| flagellar motor switch protein FliM [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|120345|sp|P06974|FLIM_ECOLI RecName: Full=Flagellar motor switch protein FliM
 gi|145981|gb|AAA23786.1| FlaAII protein [Escherichia coli]
 gi|1736611|dbj|BAA15770.1| flagellar motor switching and energizing component [Escherichia
           coli str. K12 substr. W3110]
 gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889424|gb|ACB03131.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238861113|gb|ACR63111.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253324150|gb|ACT28752.1| flagellar motor switch protein FliM [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448942|gb|ACX39364.1| flagellar motor switch protein FliM [Escherichia coli DH1]
 gi|315136582|dbj|BAJ43741.1| flagellar motor switch protein FliM [Escherichia coli DH1]
          Length = 334

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 10/303 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L  G V+P         I   +G  + + + G +   Y +RI   
Sbjct: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320

Query: 304 INF 306
           IN 
Sbjct: 321 INP 323


>gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519]
 gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii]
          Length = 332

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 108/289 (37%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           KT+  I  +   +   +L    +    +DV     S +   +    +S     + S    
Sbjct: 53  KTLHMIHENFSRILNTYLSGYLRSITQIDV----ISVEELSYYEFNNSISNPALISVIDF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                      SN L  T+++ +LG + +   +  +R  + +E  +  + +A +S +L +
Sbjct: 109 MPLPGQIIFEMSNRLAFTMIDRILGGNGKY--ESESRPFTEIETTILNKLMANVSRLLIE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L+         +  +  SNE V  I +   + ++     + +P   +L+
Sbjct: 167 PWENVIELDPELDKIETNSQFAQIVS--SNETVALITLRANVGDIEGLMNICMPH-IVLE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L +LS++       ++L +        +  + N++I+  +     T+++ + L+ G V
Sbjct: 224 PILPNLSTKFWFSTVKKELNEDDKGYLETRVKRANIDINAVVGDTYITVEEFIYLQEGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I    +      L   GK  Y    G +  N   +IT  +    +    
Sbjct: 284 IKLSRKIDEDLELHVEGKTKYLGRPGTLKNNMAFKITKVVEKGDEDYDE 332


>gi|308187297|ref|YP_003931428.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1]
 gi|308057807|gb|ADO09979.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1]
          Length = 335

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +      +  P  P    R+  +      I      +   + +         +    DIS
Sbjct: 27  KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMTLFNLLRRSPDIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 81  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +R +       +                 ++     N     N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240
                 + I N+   F + IP   +     L+       S  +     D   ++     +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  ++ LK G V+P    E    I   +   + + + G +   Y +R+
Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKPE--RIIAHVDSVPVLTSQYGTMNGQYALRV 317

Query: 301 TDRINF 306
              IN 
Sbjct: 318 EHLINP 323


>gi|312172110|emb|CBX80367.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC
           BAA-2158]
          Length = 336

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P    R+  +    + +E I+      Y+  L  + +       DI+  + +   + 
Sbjct: 38  PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       +   L        +  S +LV   ++NL G       ++  R  +  E
Sbjct: 92  EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ +R +       ++                ++     N     N+ V T   ++ I 
Sbjct: 152 QRVIRRMLKLALESYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210

Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           N+   F + IP   +++    +L       S  + E+  D   ++     + +       
Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVANFADV 269

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN 
Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324


>gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905]
 gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905]
          Length = 331

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V I+  S     F   + S     + +   +
Sbjct: 54  RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+  ++L+ L+G S  +   + N  L+ +E K+      +    L +
Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L +        +  +   NE V  I++N  I   +    + IP   +L+
Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             + +LS     Q  ++  S +       +  Q  + +   + L   T++D +T+++G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    +     +L       ++ + G+ GK   I+I D +    +
Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329


>gi|304398862|ref|ZP_07380732.1| flagellar motor switch protein FliM [Pantoea sp. aB]
 gi|304353566|gb|EFM17943.1| flagellar motor switch protein FliM [Pantoea sp. aB]
          Length = 335

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 10/306 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
           +      +  P  P    R+  +      I      +   + +         +    DIS
Sbjct: 27  KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMALFNLLRRSPDIS 80

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
             + +   +     +       +   L        +  S +LV   ++NL G       +
Sbjct: 81  VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ +R +       +                 ++     N     N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240
                 + I N+   F + IP   +     L+       S  +     D   ++     +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  ++ LK G V+P    E    I   +   + + + G +   Y +R+
Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKPE--RIIAHVDSVPVLTSQYGTMNGQYALRV 317

Query: 301 TDRINF 306
              IN 
Sbjct: 318 EHLINP 323


>gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch
           [Pelobacter carbinolicus DSM 2380]
 gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch
           [Pelobacter carbinolicus DSM 2380]
          Length = 331

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 97/262 (37%), Gaps = 5/262 (1%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
               +M   + +  +  Q  ++   +             L              L   LL
Sbjct: 72  SLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVFIFKEKLAFYLL 131

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           E+LLG + +    L  RSL+ +E  + + TIA     LN+  +  ++   +L        
Sbjct: 132 EHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIESSLVKIESSTR 191

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSED 226
           L        +  V   +  +T  N+    VL++P   +L      +   S   SE+Q   
Sbjct: 192 LINIV--PGDASVLAAHFVVTGNNLEDEIVLVLPMA-MLDPLKEKMREGSAVFSESQDRP 248

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                 ++  Q++V++  ++     T++D++  K+G ++       +   + A G+  + 
Sbjct: 249 WQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQVRAAGQPKFQ 308

Query: 287 CELGRVGKNYTIRITDRINFDQ 308
              G       +RI+ RIN + 
Sbjct: 309 AIAGTHQGKKAVRISGRINRNN 330


>gi|261344127|ref|ZP_05971771.1| flagellar motor switch protein FliM [Providencia rustigianii DSM
           4541]
 gi|282567719|gb|EFB73254.1| flagellar motor switch protein FliM [Providencia rustigianii DSM
           4541]
          Length = 335

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   +           
Sbjct: 59  ERFARQFRMGLFNMLRRSPDITVGAIKVEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV   ++NL G       +   +  +  E+++  R +               +    
Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALNAYRDAWRPIADVEVE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
                +I     N     N+ V T    + I N    F + IP   +  L+  LI+    
Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINP-PT 236

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +   ++E  +     +  +  + +   +      +  ++ L+ G V+P         I+
Sbjct: 237 EQGHQENEAWVTNLVTQVKRSELELVANLVEIPLRISSLLQLQKGDVLPIDKP--DRLIV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           + +G  + + + G     Y +R+   IN    +L  
Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330


>gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
 gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
 gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60]
          Length = 337

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 96/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+  + +  
Sbjct: 36  DVRPYDPTTQRRVVRERLQALEI------VNERFARQFRMGLFNLLRRSPDITVGAVRIQ 89

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +    +LV   ++NL G       ++  R  +
Sbjct: 90  PYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDGREFT 149

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +               +         +I     N     N+ V T    +
Sbjct: 150 HTEQRVIQRMLRLALDAYRDAWGAIFKLDVEYVR-SEIQVKFTNITTSPNDIVVTTPFTV 208

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRIN 247
            +  ++  F + IP   +     + ++   ++  Q +    D  +++     + +     
Sbjct: 209 EVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVANFV 268

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L DV+ L+IG V+P         + + +G  + +C+ G     Y +R+   IN 
Sbjct: 269 DVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEKMINP 325


>gi|292487985|ref|YP_003530862.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
 gi|292899205|ref|YP_003538574.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291199053|emb|CBJ46164.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291553409|emb|CBA20454.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
          Length = 336

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P    R+  +    + +E I+      Y+  L  + +       DI+  + +   + 
Sbjct: 38  PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       +   L        +  S +LV   ++NL G       ++  R  +  E
Sbjct: 92  EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ +R +       ++                ++     N     N+ V T   ++ I 
Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210

Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           N+   F + IP   +++    +L       S  + E+  D   ++     + +       
Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVANFADV 269

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN 
Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324


>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
 gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
           2876]
          Length = 329

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 98/284 (34%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   +      V +   + ++  +S   ++     +      
Sbjct: 54  RTLEIIFEHYGRLLSTNLPAYLRM----PVQVEVKTSEAVIYSEFSNALSNPVLLGVVDF 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  ++NL   +++ LLG + +  P    R  S +E  + +R       +L +
Sbjct: 110 EPLDGNIVLEIASNLGFVIIDRLLGGAGK--PLSKGRDFSEIELSIIERIFNICVNLLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                    P +E         +  +   +E +  + +++ + +      + +P   L  
Sbjct: 168 PWQNVLSIVPRMERIETNSQFAQIIS--PSEMIAIVTISIKLGDTEGLMNVCLPYSVLEP 225

Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 +    S  Q  D     D  +    +  + +   +     ++ D + L +G +I
Sbjct: 226 VMDKLNTKYWFSTMQHRDVKTYEDAISSLISKAQIPVKAVLGNSTISVNDFLNLNVGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               +      +       ++   G    NY +RIT+ +  +++
Sbjct: 286 RLDRKVDEELDVYVGNIHKFTALPGSADDNYAVRITNVLRGEEE 329


>gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR]
 gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR]
          Length = 333

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 108/284 (38%), Gaps = 13/284 (4%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           T++ I  +   L   FL    +      V ++  S +   +   I S     + +   + 
Sbjct: 56  TLQAIHENFARLLATFLSAHLRTV----VTMNVHSVEQITYDEFIRSLPNPTLLNIFMME 111

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
             + N  +  + N+  T+L+ L G   +   ++  R L+ +E+ + ++ I +   +L + 
Sbjct: 112 PLAGNAILEVNPNVTFTILDRLFGGPGQAPEKM--RGLTDIERTVIEKVIIRCLQILKEA 169

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
                   P LE         +  +    E V  I+++ TI +      L IP   +L+ 
Sbjct: 170 WENIIVFDPKLEIIETNPMFTQIVS--PTEMVVLISIHATIGDNEGIMNLCIPF-IVLEP 226

Query: 210 TLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            +  L++       ++  + + I    R+  +  + +   +      L +++ L+ G VI
Sbjct: 227 IISKLTAHFWFAGTAKTVTAEHIQNTQRRLEKAKITLSAVLGETTIKLGELLELQPGDVI 286

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +R      +    ++ +    G VG    ++IT  +    +
Sbjct: 287 QLDNRTTDELKILVGDRKKFYGRPGTVGSRLAVQITRLVKEGDE 330


>gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 337

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 20/304 (6%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTS 64
           +  P  P            ++ + +   +L  +  +   + F+  +        DI+  +
Sbjct: 36  DVRPYDP---------TTQRRVVRERLQAL-EIVNERFARQFRMGLFNLVRRSPDITVGA 85

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +    +LV   ++NL G       ++  
Sbjct: 86  VRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDG 145

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +               +          I     N     N+ V T 
Sbjct: 146 REFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVKYVR-SKIQVKFTNITTSPNDIVVTT 204

Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
              + +  ++  F + IP   +  L+  L++      S+ + +   D  +++     + +
Sbjct: 205 PFTVEVGALSGEFNICIPFSMIGTLRELLVNP-PLENSKQEDQHWRDTLSKQVQHSELEL 263

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L DV+ L+IG V+P         + + +G  + +C+ G     Y +R+  
Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321

Query: 303 RINF 306
            IN 
Sbjct: 322 MINP 325


>gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
 gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
          Length = 333

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 104/289 (35%), Gaps = 10/289 (3%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E  +     +++  L  + ++     V ++  S    KF   + +         
Sbjct: 49  GRMPTLEMTNEKFARMFRTTLSSMLRKV----VAVNSMSVDMIKFGEFLKTLPVPTSLHI 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
             +     N      + ++ TL++ L G + + + ++  R  + +E  L K+ I    + 
Sbjct: 105 FRMEPLRGNAIFVMESKVIFTLVDVLFGGAGKELFKVEGREFTAIETNLIKKVILSALSD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L +   T  +     +         +       + V  ++  + +E +     L IP  T
Sbjct: 165 LEKAWKTMHDIRVIYQRSEINPQFAQIV--PPTDLVFVVDFEIEVEYITGILKLCIPYST 222

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQ 263
           + +     L +  +SE    D +     +   +  ++D  I L     + KDVV LK G 
Sbjct: 223 V-EPIREKLQAGFQSEQLEVDKVWMKRFRDNLMLAHLDILIELGSTLISAKDVVNLKPGD 281

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           VI           +   G   +    G    N  +RI++ I  D++ + 
Sbjct: 282 VITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISE-IVQDKEVMD 329


>gi|238785486|ref|ZP_04629469.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
 gi|238713588|gb|EEQ05617.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
          Length = 334

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 98/303 (32%), Gaps = 12/303 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              +  P  P    R+  +      +E I+      ++  L  + +       DI+    
Sbjct: 30  TETDVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPI 83

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +     +       +   L           + +LV   ++NL G       ++  R
Sbjct: 84  KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++  R +           +   +         +I     N     N+ V T  
Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTP 202

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243
            ++ I  ++  F + IP   +++     L++     ++ ED    +   ++     + + 
Sbjct: 203 FHVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELV 261

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   
Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319

Query: 304 INF 306
           IN 
Sbjct: 320 INP 322


>gi|310767337|gb|ADP12287.1| flagellar motor switch protein [Erwinia sp. Ejp617]
          Length = 336

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P    R+  +    + +E I+      Y+  L  + +       DI+  + +   + 
Sbjct: 38  PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       +   L        +  S +LV   ++NL G       ++  R  +  E
Sbjct: 92  EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ +R +       ++                ++     N     N+ V T   ++ I 
Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210

Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           N+   F + IP   +++    +L       S  + E+  D   ++     + +       
Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVANFADV 269

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN 
Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324


>gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus
           WK1]
 gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus
           WK1]
          Length = 335

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 111/284 (39%), Gaps = 13/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ ++  +   L   F    F  ++   V IS  S     +   I S  +  + +   +
Sbjct: 57  RSLTRMHENFARLLTTF----FSAQLRTYVQISVASADQLPYEEFIRSIPKMTILTVFEV 112

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  + N+   +L+ +LG    ++ ++ N  L+ +E K+      +  + L +
Sbjct: 113 PPLDGRVLLEVNPNIAYAMLDRVLGGRGVSLNKIEN--LTEIETKIMSNLFEKAFSNLRE 170

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  +  P L DF       +  +   NE V  I++N  I + +    + IP   +L+
Sbjct: 171 AWESVADIDPMLTDFEVNPQFLQMVS--PNETVVVISLNTQIGDTSGMINICIPH-VVLE 227

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + + +  + +    ++  Q  V +   +     ++++ + L +G V
Sbjct: 228 PIIPKLSVHYWMQTQKKAREPEEVATLQKRLKQTKVPMIAELGTSTISIQEFLQLSVGDV 287

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           I      +   ++       +  + G++ K   I+I D I  + 
Sbjct: 288 IQLDQTVRDPLVIKVGDVPKFIGQPGKMNKRLAIQILDVIKGED 331


>gi|296103565|ref|YP_003613711.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058024|gb|ADF62762.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 334

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  +   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVASFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 267 DIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINP 323


>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
 gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
           27750]
          Length = 327

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 103/285 (36%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++     V +   + +   +S   ++     +     +
Sbjct: 52  RTLEIIFEHFGRLLATNLPAYLRKS----VSVDVVNSEVVIYSEFSNALSNPVLLGVVGM 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S N  +  ++NL   +++ LLG +  +      R  S +E  + +R       ++ +
Sbjct: 108 QPLSGNIIMEMASNLGFAIVDRLLGGAGNS--LDKERDFSEIELSILERIFTVCVNLMQE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 + +P LE         +  +      + TIN+ +   +V     + +P  T L+
Sbjct: 166 PWENVVKVNPRLERIETNSQFAQIISPSETIAIVTINLKI--GDVEGLVNICLPFAT-LE 222

Query: 209 TTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  L+++    N  E       D       +  + +   +   K ++ D   L+IG +
Sbjct: 223 PVMDKLNTKYWFSNMQEKDTNTYEDAIETVIDKAMIPVKAVLGTSKISVSDFANLQIGDI 282

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    +      +     + +    G     Y +R+T+ I  + +
Sbjct: 283 IRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVTEVIRKESE 327


>gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 332

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 105/289 (36%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +       +L   F  ++   V I+    +   +   I S  +  + +    
Sbjct: 53  RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +    N+   +L++LLG    +  ++   +L+ +E  + +R  ++    L +
Sbjct: 109 EPLEGRMVMEVHPNVAYAMLDHLLGGVGVSPSKIN--ALTEIETIVMERIFSKAFDSLQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              T  +  P LE         +  +   NE +  I+++  I +      L IP   +++
Sbjct: 167 AWKTVVDLQPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVIE 223

Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS  +   +Q +    + ++    +  Q  +     +     T+ + + L +G V
Sbjct: 224 PIMPRLSVHSWFVSQKKSRAPEEVEALQFRLNQAKLPFVAELGSSHITVHEFLNLSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I           +    K  Y+   G V     ++I + ++  ++    
Sbjct: 284 ITLQKPVNEPLKIRIGDKYKYTGSPGTVRGKMAVQINEPVSEGEEEYDE 332


>gi|92114085|ref|YP_574013.1| flagellar motor switch protein FliM [Chromohalobacter salexigens
           DSM 3043]
 gi|91797175|gb|ABE59314.1| flagellar motor switch protein FliM [Chromohalobacter salexigens
           DSM 3043]
          Length = 338

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
              P  P    R+  +      I      +   + +         M    DI+  S +  
Sbjct: 36  KVRPFDPAKQHRIIRERLHALDI------INERFARQFRVALFNLMRRSADITVESVRYQ 89

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +S    +       +  ++     +  +    +LV  +++NL G     + +   R  +
Sbjct: 90  SYSEFSRNLPVPTNLNLITMKPLRGSALVVFPPSLVFMVVDNLFGGDGRFLTKSEGREFT 149

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       ++   +            ++     N     NE V     ++
Sbjct: 150 RTEQRIIHRMLKMALEGYSESWKSVYPLDIEYTR-SELQVKFANITNSPNEIVVNSTFHV 208

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            + N++S F + IP   +     I  S   +   ++ +      A +    +V +     
Sbjct: 209 EVGNLSSEFNICIPYSMIEPIRDILASPLHDTHPDEEQQWEARMAHEIRHSSVELTADFV 268

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L+DV  L +G +IP    E     +S +G  + +C+ G       +R+   I  
Sbjct: 269 DIPLRLRDVTQLSVGDIIPIELPE--AVNVSVDGIPVMTCDYGSQKSQRALRVRHLIEH 325


>gi|238794009|ref|ZP_04637627.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC
           29909]
 gi|238726641|gb|EEQ18177.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC
           29909]
          Length = 334

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 99/300 (33%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T   ++
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|213053037|ref|ZP_03345915.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 320

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 10/295 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                L  ++ LK G V+P         I   +G  + + + G V   Y +R+  
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEH 319


>gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
 gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
          Length = 356

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 112/326 (34%), Gaps = 13/326 (3%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKIS-------SSLGYLYKKFLPKIFKEK 53
           +  + I  +     P +L +    L D K   ++S        ++     + L       
Sbjct: 17  VEEEDISPDELDNIPDILEQRQVTLYDFKRPNRVSKEQLRSIRAIHDKMVRNLASDISSL 76

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           M   V+I   S     +   + S      F+  SL        I  + ++V  +++ LLG
Sbjct: 77  MRSIVEIHLHSVDQMTYGEFLMSLPSPTSFNVFSLKPLDGKGVIELNPSIVFPMIDRLLG 136

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                +P    R  + +E  L  + +  I+  + +  +   E  P +E       + +  
Sbjct: 137 GPG--LPFENTREFTDIELNLLDQILRTITQNMKEAWAPIMEMYPVIEAKESSPNVVQIV 194

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231
               NE V  I M + I   +    +  P  T+  L   L S        +  +      
Sbjct: 195 --AQNEIVVMIVMEIVIGQTSGMMNICYPVITIESLLPKLASRDLMLSETSSRKSRNKEL 252

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                   V ++  +     T+++++ L +G +I          ++  +G+E +  + G 
Sbjct: 253 RALLGGAKVELEAVLGYANLTMQEILDLVVGDIIKLNRPADDTVVVKVDGREKFIADFGI 312

Query: 292 VGKNYTIRITDRINFDQKSLKNFLHK 317
                 I+I + +  +   +K  L K
Sbjct: 313 KRFRRAIKIREILKTEHDEVKEILSK 338


>gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 325

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   V+++  S    KF   + S       +   +     N  I   
Sbjct: 60  RFARLCTNALSNAIRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMDPLRGNAIIVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN+ G    + P++  R  + +E+ +  R I      + +      +    L
Sbjct: 120 SRLVFALVENVFGGIG-SQPKIEGREFTRIEQVIVDRIIKIALDNMEESWRPVHDVKLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  IN  + +++   S  + IP  T ++     L +  ++
Sbjct: 179 IRSEINPQFAAIV--PPSDVVIVINFEVELDSSIGSMTICIPYAT-IEPIRSKLHASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +     +  +  V +  R+   + T   ++ LKIG V+      +     +
Sbjct: 236 ERLEIDHAWVGRLKERLLETPVELKVRMGNTQITGNQLLRLKIGDVLVLDTDVEDLLECT 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   Y    G V  N   +I
Sbjct: 296 VAGVTKYWGIAGTVKSNKAYQI 317


>gi|238788326|ref|ZP_04632120.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC
           33641]
 gi|238723572|gb|EEQ15218.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC
           33641]
          Length = 334

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T   ++
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|238798578|ref|ZP_04642055.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
 gi|238717598|gb|EEQ09437.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
          Length = 334

 Score =  149 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 98/300 (32%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T   ++
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|317048606|ref|YP_004116254.1| flagellar motor switch protein FliM [Pantoea sp. At-9b]
 gi|316950223|gb|ADU69698.1| flagellar motor switch protein FliM [Pantoea sp. At-9b]
          Length = 335

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 89/299 (29%), Gaps = 10/299 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DIS  + +  
Sbjct: 34  DIRPYDPNTQRRVVRERLQALEI------INERFARHFRMALFNLLRRSPDISVGAIKIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ +R +       +                 ++     N     N+ V      +
Sbjct: 148 HTEQRVIRRMLKLALEGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFQV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + IP   +     L+       S  +     D   ++     + +     
Sbjct: 207 EIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSELELIAHFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  ++ LK G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 267 DVSLRLSRILQLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323


>gi|238751773|ref|ZP_04613261.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380]
 gi|238710044|gb|EEQ02274.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380]
          Length = 334

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHEFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T   ++
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGTLSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
 gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
           98-5491]
          Length = 352

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 106/287 (36%), Gaps = 8/287 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 55  RAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 114

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   +++ LLG   +  P    R  S +E  L    + Q+   L +  + 
Sbjct: 115 GTGVLEINPSIAFPMIDRLLGGKGD--PYESTREFSDIELNLLDTILRQMMQNLKEAWAP 172

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  PN++       + +      NE V  + M + I + +    L  P  + L++ L 
Sbjct: 173 ITEIFPNVDVKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 229

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +              VN+   +   K TL++++ L++G ++    
Sbjct: 230 RLASRDIMLSETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIMRLDR 289

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 I++ +G+E +   +G      TI I + I  ++  +K  L 
Sbjct: 290 PADDTVIINVDGREKFLASIGLHRYRKTIEIKEMIKTEKDQVKEILE 336


>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
           43243]
          Length = 327

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++     V +   + +   +S   ++     +    ++
Sbjct: 52  RTLEIIFEHFGRLLATNLPGYLRK----TVSVDVVNSEVVIYSEFSNALSNPVLLGVVTM 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  ++NL   +++ LLG S  T      R  S +E  + +R       +L +
Sbjct: 108 PPLKGNIIMEMASNLGYAIIDRLLGGSGNT--MDKARDFSEIELTILERIFTICVNLLQE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 ++SP LE         +  +   +E +  + +++ I  V     + +P  TL  
Sbjct: 166 PWQNVVQTSPRLERIETNSQFAQIIS--PSETIAIVTLSIKIGEVEGLMNICLPFVTLEP 223

Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 +    S  Q +D     D       +  + +   +   + ++ D V L++G +I
Sbjct: 224 VMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRAQIPMKAVLGHSRISVGDFVNLQLGDII 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               +      +     + ++   G     Y IRIT+ I  + +
Sbjct: 284 RLDRKVDDELEVYVGNIKKFAALPGYSEDKYAIRITEVIKEESE 327


>gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
           Nor1]
 gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
           Nor1]
          Length = 334

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 106/286 (37%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  +  +   L   +L    +      V I+  S     +   I S     V S   +
Sbjct: 55  RTLYMLHENFARLINTYLSAHLRTL----VHINVASVDQLTYEEFIRSLPNPSVISIFQM 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+V  +++ L G +     +   R L+ +E+ + +R +A++     +
Sbjct: 111 PPLKGNVILELNPNIVFAVIDRLFGGTGVAPVKP--RPLTDIEEAIIRRVLAKMLEGFQE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                    P +          +      ++ V  I +   I        + IP   +L+
Sbjct: 169 AWKQVVAVEPRIGAIETNPQFAQIV--PPSDMVVIITLQAKIGQAEGLINVCIPY-LVLE 225

Query: 209 TTLISLS-----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             +  L+     +   ++  +++ I    RK  + +V +   +     T++D++ L +G 
Sbjct: 226 PIMSKLTTTFWVALGTTKQVTQENITTLQRKLQRTSVPVIVELGRATVTVQDLLDLAVGD 285

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+    R      +    +E + C+ G VG    ++IT+ +    +
Sbjct: 286 VLQLESRFDGELSVIIGQREKFKCKPGLVGGKVAVQITEVMLKGDE 331


>gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146]
 gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella
           ictaluri 93-146]
          Length = 337

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 88/268 (32%), Gaps = 4/268 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L        +  
Sbjct: 61  ERFARQFRMGLFNLLRRSPDITVGAVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVF 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV   ++NL G       ++  R  +  E+++ +  +           S   +    
Sbjct: 121 EPSLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQSMLRLALDAYRDAWSAIFKLDIE 180

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                +I     N     N+ V T    + +  ++  F + IP   +     + ++   +
Sbjct: 181 YVR-SEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLE 239

Query: 220 SENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +  Q +    D  +++     + +          L DV+ L+IG V+P         + +
Sbjct: 240 NSKQEDQHWRDTLSKQVQHSELELVADFVDIPLRLSDVLKLQIGDVLPIDRP--DRLVAN 297

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306
            +G  + +C+ G     Y +R+   IN 
Sbjct: 298 VDGVPVLTCQYGCYHGQYALRVEKMINP 325


>gi|270262388|ref|ZP_06190659.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13]
 gi|270043072|gb|EFA16165.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13]
          Length = 333

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 94/304 (30%), Gaps = 12/304 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+  +      I      +   + +         +    DI+   
Sbjct: 29  SNESEVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L+          + +LV   ++NL G       ++  
Sbjct: 83  IRIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ KR +           S   + +       ++     N     N+ V T 
Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVR-AEMQVKFTNITTSPNDIVVTT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNI 242
              + I  ++  F + IP   +++     L+      S  +     +   ++     + +
Sbjct: 202 PFQVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSQWRETLVKQVQHSELEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L  ++ L+ G V+P    E    I   +G  + + + G +   Y +R+  
Sbjct: 261 IANFVDIPMRLSKILKLQPGDVLPIDKPE--RLIAHVDGVPVLTSQYGTLNGQYALRVEH 318

Query: 303 RINF 306
            IN 
Sbjct: 319 LINP 322


>gi|162147486|ref|YP_001601947.1| flagellar motor switch protein FliM [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545593|ref|YP_002277822.1| flagellar motor switch protein FliM [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786063|emb|CAP55645.1| putative flagellar motor switch protein fliM [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533270|gb|ACI53207.1| flagellar motor switch protein FliM [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 395

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 99/269 (36%), Gaps = 8/269 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + L    +   + +V+I+    +S  F   +++   + +F+      W +   I   
Sbjct: 104 RLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAVPSSSLFAVFKAVQWENYGLIVID 163

Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + L  ++++ L+G         +  R  + +E+ L ++ +      L+   +        
Sbjct: 164 SALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIEKLVTLTLNDLSTAFNPVCTIDLT 223

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            E               ++  V    +++ +E+ + S  LIIP  T L+     LS Q  
Sbjct: 224 FERLEVSARFAAI--ARASNAVVMTKLHIDMEDRSGSLDLIIPYVT-LEPVRDQLSQQFM 280

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC--A 275
            E    D         +  + ++ +      K   L +V+ L+ G +I F H+  T    
Sbjct: 281 GERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSEVLGLRPGMLISFPHQNGTPIHV 340

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            L      ++   LG++     ++I  R+
Sbjct: 341 RLQCGQTPLFEGRLGKLQDKAAVKIEKRL 369


>gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
           51599]
 gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
           51599]
          Length = 349

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 5/263 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M  + +I+++    G++S  + + +     +       + +  +  
Sbjct: 80  ERFARSLGLAMFTFMQRNPEITHSDPVVGRYSDFLGTIQLPASINIMQTRPLAGSALLVL 139

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV T+++ + G +   + +   R  S  E++L K+ I   S+   +   +       
Sbjct: 140 DGQLVSTIVDLMFGGTGRPMRKSEGREFSMTEQRLIKKLIDLSSSEYGRAWESIHPMELV 199

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                     +     +  E V +    +     + +  + IP   L        SS N 
Sbjct: 200 FTRSES--QPQFANIAIPAEMVVSTTFTLDFNGQSGTIQICIPYSVLEPIRDTLSSSLNT 257

Query: 220 -SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            S  +    +   +++     V +   +     TL +++ L+ G VI         A+L 
Sbjct: 258 NSGEEKRSWLGQMSKEIKPAGVELVAELTTATLTLGELMKLRTGDVIEIETGP--GAMLK 315

Query: 279 ANGKEIYSCELGRVGKNYTIRIT 301
                I++   G     Y +RI 
Sbjct: 316 IGQVPIFNGRYGEHNGRYAVRID 338


>gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132]
 gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           ND132]
          Length = 325

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 93/262 (35%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M   VDI+  S    KF   + S       S   +     N  +   
Sbjct: 60  RFARLCTNALANTMRKRVDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN  G +  + P++  R  + +E+ + +R +    A + +      E    +
Sbjct: 120 SRLVFALVENFFGGAG-SQPKVEGRDFTPIEQAIVERVVKIALANMEESWKPVHEVHVEM 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  +   + +EN   S ++ +P  T+ +     L +  +S
Sbjct: 179 VRTEVNPQFAAIV--PPSDVVIVVTFEVELENAIGSLIVCLPYATM-EPIRSKLHASFQS 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   I+ F  +  +  V +  R+     + + ++ L+ G +I     E       
Sbjct: 236 ERLEVDHVWINRFKERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    GRV  N + ++
Sbjct: 296 VEGVRKFQGLPGRVKGNKSFKV 317


>gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 329

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 109/286 (38%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQIIFENYSRIVTTFLSGYLRTV----VQMDVISVEQLTYYEFSNSLSNPVVMGIVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    +     S  +   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 APLKGSIVFEMSPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P LE         +  +   NE V  + ++M +  V     + +P   +++
Sbjct: 167 AWENIVDLHPKLEKIETNPQFTQIVS--PNETVALVTIDMKVGEVEGMVNICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       RK  +  V I   +   K T+++ + L++G V
Sbjct: 224 PIMPRLSTKYWFSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           I    R+     +    K  +    GR      I++T R+  + +S
Sbjct: 284 IRLDRRKNQEIEVFVGDKLKFYGVPGRKEGRVAIKVT-RVEKEDES 328


>gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus
           C3-41]
 gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
          Length = 331

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V I+  S     F   + S     + +   +
Sbjct: 54  RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+  ++L+ ++G S  +   + N  L+ +E K+      +    L +
Sbjct: 110 PPLDGNILMEINPNIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L +        +  +   NE V  I++N  I   +    + IP   +L+
Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             + +LS     Q  ++  S +       +  Q  + +   + L   T++D +T++IG V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    +     +L       ++ + G+ GK   I+I D +    +
Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329


>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
 gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
           39073]
          Length = 323

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 108/281 (38%), Gaps = 14/281 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  I  + G L   FL    +      + +   S +   +   I S     + +  S+
Sbjct: 52  RTLYMIHENYGRLVANFLSAYLRAS----IQVKIVSVEQMTYEDFILSLPTPTLMNVFSM 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + N +  +++ L G   E + +  NR L+ +E  + +R  +++   L+ 
Sbjct: 108 EPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLSY 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q  +P LE+        +  +   NE V  I M  T+        L +P   LL+
Sbjct: 166 SWSDIQNITPKLENMETNPQFTQAIS--PNETVAVITMGTTVGKYEGLLNLCLPY-MLLE 222

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ---LNVNID--TRINLKKTTLKDVVTLKIGQ 263
             +  LS+ +      E    P  R   +     V ++    I   +  ++D + L++G 
Sbjct: 223 PVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           VI           L  +G   +  + G V K   +++T+ +
Sbjct: 283 VITLEKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323


>gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
 gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
           16841]
          Length = 326

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 111/286 (38%), Gaps = 17/286 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++     V +   + ++  +S   ++     +    ++
Sbjct: 52  RTLEIIFEHYGRLLSTNLPVYLRK----TVQVEVMNSEAVTYSEFTNALSNPVLLGLVNV 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S  S +  I  ++NL   +++ +LG      P    R  S +E  + +R      ++L +
Sbjct: 108 SPLSGSIIIELADNLGYAIVDRMLGGLGT--PLDKPRDFSEIELLILERIYNVCVSLLPE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
             S+  E SP LE         +  +    E +  + +++ I +V     + +P  TL  
Sbjct: 166 PWSSVCEISPRLERIETNSQFAQIIS--PTEMIALVTLHIKIGDVEGLMNICLPYLTLES 223

Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               L T     + Q   + Q  D I+       +  + +   +     ++ D V L++G
Sbjct: 224 VMDKLNTKFWYSNLQEHDDKQYTDAIEAL---ISKAKIPVKAVLGNSTISVDDFVNLQVG 280

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            +I           +     + ++   G VG NY +R+T  +  +Q
Sbjct: 281 DIIRLDSGVNQDLNIFVGNIKKFTALPGAVGDNYAVRVTSVVREEQ 326


>gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
 gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
          Length = 334

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 107/279 (38%), Gaps = 13/279 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   I S  +    +   +
Sbjct: 55  RSLTRIHENFARLLTTF----FAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFEV 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +  +  + N+   +L+ ++G    ++ ++ N  L+ +E ++      +  + L  
Sbjct: 111 PPLNGHILMEVNPNIAYAMLDRVMGGKGTSVNKIDN--LTEIETRIISNLFDKAFSNLRD 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  E  P   DF       +  +   N+ V  I++N  I   +    + IP   +L+
Sbjct: 169 AWESVAEIDPVFTDFEVNPQFLQMIS--PNDTVVVISLNTQIGETSGMMNICIPY-VVLE 225

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + +  S +  +   R+     + I   +     T++D + L++G V
Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEALERRIRFAKLPIIAELGTATITIQDFLQLEVGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           I      +   ++       ++ + G+  K   ++I D 
Sbjct: 286 IELDQSIQQPLLIKVGDIPKFTGQPGKRNKRLAVQILDT 324


>gi|238764404|ref|ZP_04625354.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC
           33638]
 gi|238697430|gb|EEP90197.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC
           33638]
          Length = 334

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 98/300 (32%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T    +
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFQV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P    E    I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKPE--RLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira
           defluvii]
 gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira
           defluvii]
          Length = 323

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 9/279 (3%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E I+             + +EK    ++ S    Q  KF   I        F+ 
Sbjct: 49  GRMPTMEMINDRFTRQQSISWSAVLREK----IEFSVLGTQIMKFGDFIQKVPVPSSFNL 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
            ++     N        LV  +++   G   +T  +   R  +T++ +L K+ + Q  A 
Sbjct: 105 FAMEPMRGNGLFVMDAMLVYLIVDFFFGGKVQTHVKPEGREFTTIQLRLIKKLVQQALAD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
           L +           +         +      ++E V  + + + + +++    +  P   
Sbjct: 165 LEKAWQAVMPV--KIGYLRSESNPQFAMVVTTSEIVVVVTLQVHLGDISREMFIAYPYS- 221

Query: 206 LLKTTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +L+     L S   ++N  Q       F     + +V +  ++   +  ++D++    G 
Sbjct: 222 MLEPIKEKLYSGLFADNVEQDSSWGSRFKDSLQECDVALTVQLGTARINVQDLLNFNPGD 281

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           V+          +    G   +  + G    N+  R+T 
Sbjct: 282 VLMLDQHPGDPMLCLVEGDPKFQGQPGIFKGNHACRVTK 320


>gi|268589967|ref|ZP_06124188.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131]
 gi|291314684|gb|EFE55137.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131]
          Length = 335

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+    +   +     +       +   +           
Sbjct: 59  ERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV   ++NL G       +   +  +  E+++  R +               +    
Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRQEGKEFTNTEQRIINRMLKLALGAYRDAWKPIADIEVE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
                +I     N     N+ V T    + I N    F + IP   +  L+  LI+    
Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINPPM- 236

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +   ++E  +     +  +  + +          +  ++ L+ G VIP         I+
Sbjct: 237 EQGHQENETWVTNLVTQVKRSELELVANFVDIPMRISRLLQLQKGDVIPIEKP--DRLIV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           + +G  + + + G     Y +R+   IN    +L  
Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330


>gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
 gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
           3645]
          Length = 376

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 105/300 (35%), Gaps = 12/300 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
              +  +P       R+       + ++ +    G  +   L  + +      V++  TS
Sbjct: 55  RPREKITPYDFKRPERV--GKEQMRALQSMHEGFGRNFGAALSGLLRNI----VEVKLTS 108

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
                +S  I S +    F+  + S    N  +  + +++  +++ LLG   E+ P    
Sbjct: 109 VDQLTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGGGKESSPV-SR 167

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R L+ +E  L  R        L        +   ++        L +      NE +  I
Sbjct: 168 RPLTEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVESNPQLVQIV--PPNEVIVLI 225

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVN 241
           +  +TI +V     L IP  ++ +      +       +   SE+     + +    +V 
Sbjct: 226 SFELTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSEESRQALSTQIDGASVE 285

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   K T +D++ L++G VI      +    +S NG   +    G       I++ 
Sbjct: 286 VGVTLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNGVTKFLAFPGAFKGRKAIQVD 345


>gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 325

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M   VDI+  S    KF   + S       S   +     N  +   
Sbjct: 60  RFARLCTNALANTMRKRVDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN  G +  + P++  R  + +E+ + +R +    A + +      E    L
Sbjct: 120 SRLVFALVENFFGGAG-SQPKVEGRDFTPIEQAIVERVVKIALANMEESWKPVHEVHVEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  +   + +EN   S ++ +P  T+ +     L +  +S
Sbjct: 179 VRTEVNPQFAAIV--PPSDVVIVVTFEVELENAIGSLIVCLPYATM-EPIRSKLHASFQS 235

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILS 278
           E    D +     K   +   ++  I + +TT+  + ++ L+ G +I     E       
Sbjct: 236 ERLEVDHVWINRFKERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    GRV  N + ++
Sbjct: 296 VEGVRKFQGLPGRVKGNKSFQV 317


>gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046]
          Length = 331

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 106/285 (37%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V I+  S     F   + S     + +   +
Sbjct: 54  RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+  ++L+ L+G +  +   + N  L+ +E K+      +    L +
Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGAGGSHSNVDN--LTEIETKIMTNLFERSFDNLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L +        +  +   NE V  I+ N  I        + IP   +L+
Sbjct: 168 AWENVAEIDPMLVELEVNPQFLQMIS--PNETVVVISFNTIIGETTGMINICIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             + +LS     Q  ++  S +       +  Q  + I   +     T++D +T+ +G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           IP   + +    L       ++ + G++     ++I D +    +
Sbjct: 285 IPLKQKIENPLTLKVGSLPKFTVQPGKLNNKMAVQIIDPLKGGDE 329


>gi|293395596|ref|ZP_06639879.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582]
 gi|291421915|gb|EFE95161.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582]
          Length = 334

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGPIRIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L+          + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++ KR +           S   +         ++     N     N+ V T    +
Sbjct: 147 PTEQRVIKRMLRLALDAYGDAWSAIYQIDVEYVR-AEMQVKFTNITTSPNDIVVTTPFQV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L+      S  +     +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSRWRETLVKQVQHSELELIANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  V+ L+ G V+P    E    I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPMRLSKVLKLQPGDVLPIDKPE--RLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
 gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
 gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
 gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
          Length = 332

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 9/265 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   + I+ +S     +   I S     + +   +S       +  + 
Sbjct: 63  FARLLTTHFSAQLRSYIQITVSSVDQVPYEEFIRSIPNMTLLNLFYVSPLEGRIMLEVNP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +   +++ L+G    +  +    SL+ +E K+             +   +  +  P + 
Sbjct: 123 TIGYAMMDRLMGGIGISHNKTE--SLTEIETKIISNMFEGALENYREAWQSITDIEPEMA 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217
           DF      +       NE V  I++N  I  V+    L IP   +L+  +  LS     Q
Sbjct: 181 DFEV--NPQFVQMVSPNETVVVISLNTQIGEVSGVINLCIPH-VVLEPIIPKLSVHYWMQ 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++     +       ++     + +   +   + T+++ + L+IG  I           +
Sbjct: 238 SERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDCIALDKPVNAPLTV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
               K  +  + GRV +   I+I D
Sbjct: 298 MVGNKPKFLGQAGRVNRKQAIQILD 322


>gi|188534127|ref|YP_001907924.1| flagellar motor switch protein FliM [Erwinia tasmaniensis Et1/99]
 gi|188029169|emb|CAO97041.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
          Length = 336

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 12/297 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P    R+  +    + +E I+      Y+  L  + +       DI+  + +   + 
Sbjct: 38  PYDPNTQRRVVRER--LQALEIINERFARAYRMALFNLLR----RSPDITVGAIKIQPYH 91

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       +   L        +  S +LV   ++NL G       ++  R  +  E
Sbjct: 92  EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++  R +       ++                ++     N     N+ V T    + I 
Sbjct: 152 QRVIGRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFQVEIG 210

Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           N+   F + IP   +++    +L       S +Q E   D   ++     + +       
Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLSQDETWRDTLVKQVQHSELELVANFADV 269

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +  ++ LK G V+P         I   +G  + + + G + K + +R+   IN 
Sbjct: 270 SMRISRLLALKPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNKQFALRVEHLINP 324


>gi|226327727|ref|ZP_03803245.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198]
 gi|225203431|gb|EEG85785.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198]
          Length = 343

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 98/307 (31%), Gaps = 10/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            +  P  P    R+  +    +++E I+      ++  L  + +       DI+    + 
Sbjct: 41  PDIQPYDPNTQRRVVRER--LQSLEIINERFARQFRMGLFNMLR----RSPDITVGGIKI 94

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   L             NLV   ++NL G        +  R  
Sbjct: 95  HPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGREF 154

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  + +            +  +         ++     N     N+ V T    
Sbjct: 155 TNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVR-SEMQVKFTNITSSPNDIVVTTPFQ 213

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRI 246
           + I ++   F + IP   +       ++   ++  Q +   +D    +     + +    
Sbjct: 214 VEIGSMVGEFSICIPFAMIEPLRERLINPPIENVRQEDGVWLDSLVNQVQHSELELVANF 273

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  V+TLK G VIP    E    I   +G  + + + G V   Y +R+   IN 
Sbjct: 274 TDIPLRLSKVLTLKEGDVIPIDKPE--RLIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 331

Query: 307 DQKSLKN 313
              +L  
Sbjct: 332 VLNALDE 338


>gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 333

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 111/318 (34%), Gaps = 18/318 (5%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + Q   +   P       R      D+ +T++ I+ +   L   +L    +      V+I
Sbjct: 28  KQQDTQQKVKPYD---FRRPAKFSKDQIRTLQMINENFARLLSTYLSAYLRSY----VEI 80

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
              S     +   + S     +    S         +  + N+   +++ L+G   ET  
Sbjct: 81  ELASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEMNPNIAFAVIDRLMGGPGETFE 140

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
                 L+ +E+ +A++   ++   + +      E  P  E   +     +  +   NE 
Sbjct: 141 STGE--LTEIEEAVARKIFNRMLDSMLEAWKNVGELEPEFERIENNPQFTQIIS--PNEI 196

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN-----QSEDLIDPFARKT 235
           V  +  ++ +      F + +P    L+  +  LS++           +E+       + 
Sbjct: 197 VAVVAFSVKVGEAEGLFNVCLPY-IFLEPVIDRLSARFWFATGHQKKITEEESQALKNRL 255

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++  V +   +   + ++K+ + L+ G VI      ++   L    K  +  + G +   
Sbjct: 256 HKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNK 315

Query: 296 YTIRITDRINFDQKSLKN 313
             ++IT  +     SL  
Sbjct: 316 LAVQITQIVREGDDSLGE 333


>gi|238758098|ref|ZP_04619278.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236]
 gi|238703636|gb|EEP96173.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236]
          Length = 334

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T    +
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFQV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|259908765|ref|YP_002649121.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
 gi|224964387|emb|CAX55896.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
 gi|283478741|emb|CAY74657.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163]
          Length = 336

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P    R+  +    + +E I+      Y+  L  + +       DI+  + +   + 
Sbjct: 38  PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
               +       +   L        +  S +LV   ++NL G       ++  R  +  E
Sbjct: 92  EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           +++ +R +       ++                ++     N     N+ V T   ++ I 
Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210

Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           N+   F + IP   +++    +L       S  + E+  D   ++     + +       
Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVANFADV 269

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +  ++ LK G V+P         I   +G  + + + G + K Y +R+   IN 
Sbjct: 270 SMRISRLLALKPGDVLPIEK--LDRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324


>gi|123442771|ref|YP_001006748.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332161335|ref|YP_004297912.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122089732|emb|CAL12585.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318605256|emb|CBY26754.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665565|gb|ADZ42209.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861091|emb|CBX71358.1| flagellar motor switch protein fliM [Yersinia enterocolitica
           W22703]
          Length = 334

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V T    +
Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFQV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|242238988|ref|YP_002987169.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703]
 gi|242131045|gb|ACS85347.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703]
          Length = 343

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 99/301 (32%), Gaps = 10/301 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
              S   +  P  P    R+  +    +++E I+      ++  L  + +       DI+
Sbjct: 28  SAASADSDIKPYDPNTQRRVVRER--LQSLEIINERFARQFRMGLFNLLR----RSPDIT 81

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               +   +     +       +   L           S +LV   ++NL G       +
Sbjct: 82  AGPIKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTK 141

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           +  R  +  E+++ KR +           +   +         ++     N     N+ V
Sbjct: 142 VEGREFTHTEQRVVKRMLRLALDAYGDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIV 200

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240
            T   ++ I N+   F + IP   +     L+       S  + ++  +  A++     +
Sbjct: 201 VTTPFHVEIGNLTGEFNICIPFAMIEPLRELLVNPPLENSRQEDQNWRETLAKQVQHSEL 260

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +          L  V+ LK G V+P    E   A +  +G  + + + G     Y +R+
Sbjct: 261 ELVANFVDIPLRLSKVLKLKPGDVLPIEKPESLVAHV--DGVPVLTGQYGTFKGQYALRV 318

Query: 301 T 301
            
Sbjct: 319 E 319


>gi|212709505|ref|ZP_03317633.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM
           30120]
 gi|212687843|gb|EEB47371.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM
           30120]
          Length = 335

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 84/276 (30%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   +           
Sbjct: 59  ERFARQFRMGLFNMLRRSPDITVGAIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV   ++NL G       +   +  +  E+++  R +               +    
Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALGAYRDAWKPIADVEVE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
                +I     N     N+ V T    + I N    F + IP   +  L+  L +    
Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLTNPPM- 236

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +   ++E  +     +  +  + +   +      +  ++ L+ G V+P         I+
Sbjct: 237 EQGHQENEAWVTNLVTQVKRSELELIANLVDIPLRISRLLQLQKGDVLPIEKP--DRLIV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           + +G  + + + G     Y +R+   IN    +L  
Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330


>gi|183598647|ref|ZP_02960140.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827]
 gi|188020831|gb|EDU58871.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827]
          Length = 335

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 84/276 (30%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+    +   +     +       +   +           
Sbjct: 59  ERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV   ++NL G       +   +  +  E+++  R +    +          +    
Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIIHRMLKLALSAYRDAWRPIADIDVE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
                ++     N     N+ V T    + I N    F + IP   +  L+  LI+    
Sbjct: 179 YVR-SEMQVKFTNITTSPNDIVVTTPFLVEIGNTIGEFSICIPIAMIEPLRERLINP-PV 236

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            +   ++E  +     +  +  + +          +  ++ L+ G VIP         I+
Sbjct: 237 EQGHQENEAWVSNLVTQVKRSELELVANFVDIPLRISRLLQLQKGDVIPIEKP--DRLIV 294

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           S +G  + + + G     Y +R+   IN    +L  
Sbjct: 295 SVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330


>gi|157371194|ref|YP_001479183.1| flagellar motor switch protein FliM [Serratia proteamaculans 568]
 gi|157322958|gb|ABV42055.1| flagellar motor switch protein FliM [Serratia proteamaculans 568]
          Length = 333

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 96/304 (31%), Gaps = 12/304 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P    R+  +      I      +   + +         +    DI+   
Sbjct: 29  SNESEVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGP 82

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L+          + +LV   ++NL G       ++  
Sbjct: 83  IKIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ KR +           S   + +       ++     N     N+ V T 
Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVR-AEMQVKFTNITTSPNDIVVTT 201

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNI 242
              + I  ++  F + IP   +++     L++     ++ ED    +   ++     + +
Sbjct: 202 PFQVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELEL 260

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                     L  ++ L+ G V+P         I   +G  + + + G +   Y +R+  
Sbjct: 261 IANFVDIPMRLSKILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEH 318

Query: 303 RINF 306
            IN 
Sbjct: 319 LINP 322


>gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1]
 gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1]
          Length = 332

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 108/285 (37%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   +   +    F  ++   V I+  S     F   + S  +  + +   +
Sbjct: 54  RSLTRIHENFARILTTY----FSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFDV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + N+   +++ ++G     I ++ N  L+ +E K+      +    L  
Sbjct: 110 PPLDGHILMEVNPNIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLRD 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   E  P L +F       +  +   NE V  I+MN TI   +    +IIP   +L+
Sbjct: 168 AWSNIAEIDPMLSEFEVNPQFLQMVS--PNETVVVISMNTTIGETSGMINIIIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q K+++      +   ++     V I   +     T+ D + L IG V
Sbjct: 225 PIIPKLSVSYWMQTKNKDIDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    R      +       ++ + G + K   ++I D +   ++
Sbjct: 285 IQLNKRIDAPLTIKVGEIPKFTAQPGELNKRLAVQILDSLKGGEE 329


>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
 gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
          Length = 329

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 104/285 (36%), Gaps = 13/285 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            ++I+ +       +   L    +   D++      S     +   + S      F+  S
Sbjct: 53  MRSIKNLHDKFARNFSSSLSGYLRSITDMN----LISVDQMTYGEFLMSLPNPTSFNIIS 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +  + +LV  +++ LLG   E  P    R ++ +E+ +    +A     L 
Sbjct: 109 MLPLDGNAVLEVNPSLVFPIIDKLLGGQGE--PIDEVREITDIEQNVIGGVLAIALRELA 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +           +E      ++ +  +   NE V  +   + + +V+    + IP   +L
Sbjct: 167 EVWQPIINIRFKIELRETSPHVIQIVS--QNEVVILLVFEIKVGDVSGMMNICIP-AIVL 223

Query: 208 KTTLISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  + SQ+         +   +        +   N+   +     TL++++ L+IG 
Sbjct: 224 EPIMQKIDSQDWLIGAKKMHATANVQQITSIVSKSRTNLQAVLGESTMTLREILDLEIGD 283

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           ++    + +   +L     + Y  E+G +  N   +I  +I  + 
Sbjct: 284 ILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNNKAFKIHRKIVKED 328


>gi|189911092|ref|YP_001962647.1| flagellar motor switch protein FliM [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775768|gb|ABZ94069.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
          Length = 341

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 13/289 (4%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            +    +  ++ +        ++   V +   S     +   I S       +  ++   
Sbjct: 52  IRTLQMMHEIFARLATTGLSAQLRALVVVHVASVDQLTYEEFIRSIPNPTTLAVINMDPL 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +    ++  T+++ L G   E+     NR LS +E  + +  I +I   L +  S
Sbjct: 112 RGSAILEIDPSISFTIIDRLFGGKGESSKV--NRELSDIELSVMEGIIVRILGNLRESWS 169

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
           T  +  P L +        +      N+ V  I +   +  V     L IP  T ++  +
Sbjct: 170 TVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKVGEVEGMTNLCIPYIT-IEPII 226

Query: 212 ISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             LS+Q    +  +  +D        +  Q+ + + + +     +L D++ L +G VI  
Sbjct: 227 NKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPLISEVGSVDISLNDLMNLHVGDVIKL 286

Query: 268 LHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
            +   KT  ++    +  +    GRVG    I+I D I   +      L
Sbjct: 287 ENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIGDSI---EDIPDELL 332


>gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
 gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
          Length = 334

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 108/289 (37%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   I S  +    +   +
Sbjct: 55  RSLTRIHENFARLLTTF----FAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFEV 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +  I  + N+   +L+ ++G    +I ++ N  L+ +E ++      +  + L  
Sbjct: 111 PPLNGHILIEVNPNIAYAMLDRVMGGRGTSINKVDN--LTEIETRIMSNLFDKAFSNLRD 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  E  P   DF       +  +   N+ V  I++N  +   +    + IP   +L+
Sbjct: 169 AWESIAEIDPIFTDFEVNPQFLQVIS--PNDTVVVISLNTKVGETSGMINICIPH-VVLE 225

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + +  S +  +   R+     + I   +     T+++ + L++G V
Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEAIERRIRFAKLPIIAELGTATITIQEFLQLEVGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I      +   ++       +  + G+  K   ++I D    ++     
Sbjct: 286 IELDQSIQQPLLIKVGDIPKFIGQPGKRNKRLAVQILDAFKGEEDYNDE 334


>gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
 gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
          Length = 352

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 103/283 (36%), Gaps = 9/283 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I + + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILSNMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E V  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMVILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K    ++ +   I   K  ++++++L+ G VI   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDVLREKLENTDMLLVAEIGEVKLKVREILSLEKGDVINLE 298

Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                   IL    K+ + C +G VG   +++IT+++   +  
Sbjct: 299 DSPIDKDLILKVGTKQKFKCRMGLVGSKISVQITEKVGEVEDF 341


>gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis
           HTE831]
 gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 330

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 15/287 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           ++I +I  +   +   F     +      V+IS TS     +   I S  +  + +   +
Sbjct: 53  RSISRIHENYARMLTTFFATQLRSY----VNISVTSVDQVPYEEFIRSIPKKTILNLYGM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+   LL+ LLG    TI +  N  L+ +EK L  +   +    L  
Sbjct: 109 EPLDGNLIMEINPNIAYALLDRLLGGKGSTITKDGN--LTEIEKTLFMQMFEKAEDALRD 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S+  E  P LE+F +     +      NE V  +++   I        + IP   +L+
Sbjct: 167 AWSSVVEIEPVLEEFEENPQFMQKI--APNETVVVVSLTTVIGETTGMINICIPH-VILE 223

Query: 209 TTLISLSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +  LS       + N+ E       +   +  V +   +     ++ D +  + G +I
Sbjct: 224 PIIPKLSVHYWMQSNSNKDEQAYGKMQQNLKKTEVELKAILGATTISIHDFLNFQQGDII 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309
                     +LS   +  +  + G+     +++I + I   N D +
Sbjct: 284 SLDQPIDAPLLLSIYDQPKFFAQPGKFKNKMSVQILEEIKGVNEDDE 330


>gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
 gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
          Length = 332

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 111/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   I S  +  + +   +
Sbjct: 54  RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFIRSIPKMTILNVIEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  + N+   +++ L+G    +I ++ N  L+ +E K+   T  +    L +
Sbjct: 110 PPLDGRILMEVNPNVAYAMMDRLMGGRGTSINKVDN--LTEIETKIMSATFERAFENLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  +  P L DF       +  +   NE V  I++N TI   +    + IP   +L+
Sbjct: 168 AWSTIADIDPLLADFEVNPQFLQMVS--PNETVVVISLNTTIGETSGMINICIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q   + +  ++I    R  ++  V +   +      ++D ++L IG V
Sbjct: 225 PIIPKLSVHYWMQTDKKEREPEVIARLERNIHKAEVPVICELGSSDIAIQDFLSLDIGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I          I+       +  + G++ K   ++I D +    +
Sbjct: 285 IELNQGIDQALIIKVGNIPKFIGQPGKMNKKMAVQILDTVKGGDE 329


>gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
 gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
           1]
          Length = 365

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 8/288 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 55  RAFRGVHDKMARSLASQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLE 114

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +  I  + ++   +L+ LLG   E  P   +R  S +E  L +  +  + + L +    
Sbjct: 115 GSGVIEINPSIAFPMLDRLLGGKGE--PFDASREFSDIELSLFETILRVMMSTLKEAWGP 172

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  P +E       + +      NE V  + M + I + +    +  P  + L+  L 
Sbjct: 173 VMEIYPTIESKESSPNVVQIV--AQNEIVVMVVMEIIIGHSSGMMNICYPVIS-LEPILP 229

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +              VN++  +   + T++DV+ L+IG V+    
Sbjct: 230 KLASRDLMLNETSSKKSRNTELQVLLGGAKVNVEANLGDAELTMRDVLDLQIGDVVRLSS 289

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                  +S +GKE +  ++G      +I+I++ I+ ++ ++K  L  
Sbjct: 290 AANDIVTVSIDGKERFRGQIGLRRFRKSIQISEIIDTEKDAVKRALEN 337


>gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
           51449]
 gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
           51449]
          Length = 353

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 109/287 (37%), Gaps = 8/287 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +   S+     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 54  RAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLE 113

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   +++ LLG   +  P   +R  S +E  L    + Q+   L +  S+
Sbjct: 114 GAAILEINPSIAFPMIDRLLGGKGD--PYESSREFSDIELNLLDTLLRQVMQNLKEAWSS 171

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  P+++       + +      NE V  + M + I + +    +  P  + L+T L 
Sbjct: 172 ITEIFPSVDAKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMSICYPVIS-LETVLS 228

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +             NV +   +     TLK+++ L++G ++    
Sbjct: 229 RLASRDLMLSDTSSKKSRNKELQALIAGANVIVSGYLGDATLTLKEILDLQVGDIVRLDT 288

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 I+S +G+E Y   +G      T++I + I  ++  +K  L 
Sbjct: 289 IADDTIIVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335


>gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
 gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
          Length = 317

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             +   +    K  +    + S  +         + S     + S      W   F +  
Sbjct: 41  ERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALESMPSPALISVIESPDWDGPFALVI 100

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             + +I+ LE   G       +   RS + +EKK+       +   L++      +    
Sbjct: 101 DPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGTEVTQLMLNELSETFGQLAQIEFT 160

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           +         +       N     + M++T+++    F +++P   L  ++  L+     
Sbjct: 161 ISHIET--NAQAMVLAPPNTGCVRLRMHVTMDDRDGYFYIVMPFNALSNIRNMLVQPFHG 218

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S    +             +V +  R+   K  L++V+  K GQV+           L
Sbjct: 219 G-SLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDLGIEVDQPVSL 277

Query: 278 SANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLK 312
             +G E+Y  + G R      ++IT+++  +++   
Sbjct: 278 ICSGHEMYMAQTGKRKNGRMALKITEQLKDEEEMTD 313


>gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 333

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 115/318 (36%), Gaps = 17/318 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
           ++ +   K           R      D  +++ +I  +       +L   F  ++   V 
Sbjct: 27  LKKEETQKKIRSYD---FKRAVRFSKDHIRSLTRIHENFAR----YLTTYFSAQLRTFVQ 79

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           I+    +   +   I S  +  + +            +    N+   +L+ LLG      
Sbjct: 80  INVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAFAMLDRLLGGLGTAP 139

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++   +L+ +E  + +R  ++    L +   T  + +P +E         +  +   NE
Sbjct: 140 SKVG--TLTEIETIIMERIFSRAFESLQEAWKTVVDINPRMEALETNPQFMQIVS--PNE 195

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE----DLIDPFARKT 235
            +  I+++  I + +    L IP   +++  +  LS  +   +Q +    + ++    + 
Sbjct: 196 TIALISLSTKIGDTSGMINLCIPH-VVIEPIMPKLSVHHWFVSQKKSRVPEEVEALRNRV 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +  + I   +   + T+++ ++L +G VI      +    +    +  Y    G V   
Sbjct: 255 NKAKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQIRVGDRLKYIGSPGTVKDR 314

Query: 296 YTIRITDRINFDQKSLKN 313
             ++I + ++   + L  
Sbjct: 315 LAVQIDEIVSEGAEELDE 332


>gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
 gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
          Length = 347

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 105/302 (34%), Gaps = 10/302 (3%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
                 P  P    R+  +     T++ I+      ++  L  + +       DI+  S 
Sbjct: 31  SAPKVRPFDPASQHRIIRER--LHTLDIINERFARHFRMGLFNLIR----RSADITVDSV 84

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
           +   +S    +       +  ++     +  I    NLV  +++NL G     + +   R
Sbjct: 85  RYQSYSEFSRNVPVPTNINMIAMKPLKGSALIVFPPNLVFMVVDNLFGGDGRFLTKSEGR 144

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             +  E+++ +R +       +    +      +     ++     N     NE V   N
Sbjct: 145 EFTNTEQRIIQRMLRLAIEAYSDSWRSVYPLEISFLR-SEMQAKFANITNSPNEIVVNTN 203

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDT 244
            N+ + N+ASSF + +P   +     + ++  +    +Q        A +     V +  
Sbjct: 204 FNLEVGNLASSFQICMPYSMIEPLRDLLINPLSDGHQDQDSTWTRRMAGEIRHSTVELVA 263

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 + + DV  L++G ++P    E   A +  +G  +  CE G       +R+    
Sbjct: 264 DFADLPSRIADVTALEVGDILPLELPETVTAKV--DGVPVMECEYGSQHGQRALRVLRLF 321

Query: 305 NF 306
           + 
Sbjct: 322 DH 323


>gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
 gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [Sulfurimonas denitrificans DSM
           1251]
          Length = 372

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 104/279 (37%), Gaps = 8/279 (2%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
             + L       M   V+I   S     +   + S      F+  S+     +  I  + 
Sbjct: 67  MARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGSGVIEINP 126

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           ++   +L+ LLG   E  P   +R  S +E  L +  +  + + L        E  PN+E
Sbjct: 127 SIAFPMLDRLLGGKGE--PFDASREFSDIELSLFETILRVMMSTLKDAWGPVMEIFPNIE 184

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN--- 218
                  + +      NE V  + M + I   +    +  P    L+  L  L+S++   
Sbjct: 185 SKESSPNVVQIV--AQNEIVVMVVMEIIIGQSSGMMNICYPVIA-LEPVLPKLASRDLML 241

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
              +  +              V I+  +   + TL+DV+ L+ G ++           + 
Sbjct: 242 NETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTIC 301

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
            +GK+ +  ++G      ++++T+ I+ ++ ++K  L  
Sbjct: 302 VDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKRALEN 340


>gi|238796938|ref|ZP_04640442.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
 gi|238719198|gb|EEQ11010.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
           43969]
          Length = 332

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 11/285 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83
           ++ + +   SL  +  +   + F+  +        DI+  + +   +     +       
Sbjct: 45  RRVVRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 103

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +   ++          S NLV   ++NL G       +   R  +  E+++ KR +    
Sbjct: 104 NLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIKRMLTMAL 163

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
              +   S+  +         +I     N     N+ V T    + I      F + IP 
Sbjct: 164 EAYDFAWSSIFKLHTEYVR-AEIQVKFTNITSSPNDIVVTTPFYVEIGPHRGEFDICIPF 222

Query: 204 ETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
             +++     L+S     S  + +   +  A +  +  + +        T L  V+ +K 
Sbjct: 223 S-IIEPLRELLTSPPMENSRQEEKQWRNTLASQVRETELELVASFADIPTRLSQVMKMKE 281

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           G VIP   +E   A +  +G  ++S + G V K Y +++   +N 
Sbjct: 282 GDVIPIDKQESIEACV--DGVPVFSGKYGCVNKQYALKVEKMMNP 324


>gi|300722647|ref|YP_003711937.1| flagellar motor switch and energizing protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629154|emb|CBJ89750.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus nematophila ATCC 19061]
          Length = 335

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 81/275 (29%), Gaps = 4/275 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 59  ERFARQFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV   ++NL G       ++  R  +  E+++  R +            +  +    
Sbjct: 119 EPSLVYIAVDNLFGGDGRFPTKVEGREFTYTEQRIINRMLKLALDAYRDAWDSIFKIEVE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                ++     N     N+ V T    + I  +   F + IP   +        +   +
Sbjct: 179 YVR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALTGEFNICIPFAMIEPLRERLTNPPVE 237

Query: 220 SENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +  Q          ++     + +          L  ++ LK G V+P    E    I+ 
Sbjct: 238 NLRQEDGQWRKSLVKQVQHSELELVANFVDIPLRLSKILELKAGDVLPIEKPE--RLIVH 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
            +G  +   + G +   Y +R+   IN    +L  
Sbjct: 296 VDGVPVLISQYGTLHGQYALRVEHLINPVLTALDE 330


>gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
 gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
          Length = 332

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 16/288 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   I S  +  + +   +
Sbjct: 54  RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFIRSIPKMTILNVFEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  + N+   +++ ++G    +I ++   +L+ +E K+   T  +    L +
Sbjct: 110 PPLDGRILMEVNPNIAYAMMDRMMGGRGSSINKVD--TLTEIETKIMSNTFERAFEHLRE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  E  P L +F       +  +   NE V  I++N  I   +    + IP   +L+
Sbjct: 168 AWSTITEIDPFLAEFEINPQFLQMVS--PNETVVVISLNTMIGETSGMINICIPH-VVLE 224

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + + +  + +        +  V +   +     +++D + L +G V
Sbjct: 225 PIIPKLSVHYWMQTEKKEREPEELGRLEDSIQKAQVPVSAELGSADISIQDFLMLDLGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309
           I           +       ++ + G+  K   I+I D +   + D +
Sbjct: 285 IELNQAIDRPLTIKIGDIPKFTGQPGKANKKLAIQILDTLKGGDSDDE 332


>gi|51596032|ref|YP_070223.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           32953]
 gi|153949279|ref|YP_001401268.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           31758]
 gi|51589314|emb|CAH20935.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           32953]
 gi|152960774|gb|ABS48235.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
           31758]
          Length = 333

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V +    +
Sbjct: 147 HTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVSTPFQV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGTLSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|22126366|ref|NP_669789.1| flagellar motor switch protein FliM [Yersinia pestis KIM 10]
 gi|45441387|ref|NP_992926.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807195|ref|YP_651111.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua]
 gi|108812461|ref|YP_648228.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|145598589|ref|YP_001162665.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F]
 gi|149366229|ref|ZP_01888264.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125]
 gi|165925921|ref|ZP_02221753.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938773|ref|ZP_02227328.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010886|ref|ZP_02231784.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210779|ref|ZP_02236814.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401189|ref|ZP_02306692.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420157|ref|ZP_02311910.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425859|ref|ZP_02317612.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467512|ref|ZP_02332216.1| flagellar motor switch protein FliM [Yersinia pestis FV-1]
 gi|170024624|ref|YP_001721129.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           YPIII]
 gi|186895137|ref|YP_001872249.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928944|ref|YP_002346819.1| flagellar motor switch protein FliM [Yersinia pestis CO92]
 gi|229896268|ref|ZP_04511438.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A]
 gi|229897205|ref|ZP_04512361.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897932|ref|ZP_04513083.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902837|ref|ZP_04517954.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|270486623|ref|ZP_06203697.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27]
 gi|294504010|ref|YP_003568072.1| flagellar motor switch protein [Yersinia pestis Z176003]
 gi|21959351|gb|AAM86040.1|AE013852_2 flagellar motor switch protein [Yersinia pestis KIM 10]
 gi|45436247|gb|AAS61803.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776109|gb|ABG18628.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|108779108|gb|ABG13166.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua]
 gi|115347555|emb|CAL20464.1| flagellar motor switch protein FliM [Yersinia pestis CO92]
 gi|145210285|gb|ABP39692.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F]
 gi|149292642|gb|EDM42716.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125]
 gi|165913387|gb|EDR32009.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922125|gb|EDR39302.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990230|gb|EDR42531.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207959|gb|EDR52439.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961852|gb|EDR57873.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049578|gb|EDR60986.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055258|gb|EDR65055.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751158|gb|ACA68676.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           YPIII]
 gi|186698163|gb|ACC88792.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680284|gb|EEO76383.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
 gi|229688973|gb|EEO81038.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693542|gb|EEO83591.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701191|gb|EEO89220.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A]
 gi|262361804|gb|ACY58525.1| flagellar motor switch protein [Yersinia pestis D106004]
 gi|262366060|gb|ACY62617.1| flagellar motor switch protein [Yersinia pestis D182038]
 gi|270335127|gb|EFA45904.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27]
 gi|294354469|gb|ADE64810.1| flagellar motor switch protein [Yersinia pestis Z176003]
 gi|320015439|gb|ADV99010.1| flagellar motor switch protein FliM [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 333

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      +E I+      ++  L  + +       DI+    +  
Sbjct: 33  DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L           + +LV   ++NL G       ++  R  +
Sbjct: 87  PYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +           +   +         +I     N     N+ V +    +
Sbjct: 147 HTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVSTPFQV 205

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246
            I  ++  F + IP   +++     L++     ++ ED    +   ++     + +    
Sbjct: 206 EIGTLSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELVANF 264

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  ++ L+ G V+P         I   +G  + + + G +   Y +R+   IN 
Sbjct: 265 VDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322


>gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C]
          Length = 322

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 5/252 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
             L       S  + K   I  +     +    +   W ++        LV    E   G
Sbjct: 60  TSLKFMTDVQSLDTLKAEQITQAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFG 119

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           AS   I     R  S +E K+       ++  L+        S    +           T
Sbjct: 120 ASEPMITNRNGRPFSPIESKVGATFGKLLAYALDGVFGIGDGSLLIFKQTCKAQEFNAET 179

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231
              S  F  +  + +    V +   +++P+    +    +++   ++  +  D       
Sbjct: 180 FNQSQMF--SCTLGVKCGEVETHVNILMPRSCH-RPIQEAVTRALRAPAKRTDPLWAKRL 236

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            ++  +  V I+  I     TL ++ TLK+GQ++P          L +  K +Y C LG+
Sbjct: 237 KQEVSRSRVRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGK 296

Query: 292 VGKNYTIRITDR 303
           +G +++IR+T+ 
Sbjct: 297 IGTSFSIRVTNP 308


>gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
           43531]
 gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
           43531]
          Length = 333

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 97/277 (35%), Gaps = 10/277 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + + L       +   +DI  +S +   +   + S     V    +L        I
Sbjct: 59  LHESFSRLLNTYLSASLRTMIDIDVSSVEQVTYQEFVQSMANPSVIGILALPPLKGKIII 118

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
             +  +    ++ + G      P +  R L+ +E  + +R I   +    +  S   E  
Sbjct: 119 EINPGIAFAYIDRIFGGEGR--PAVKTRVLTDIEMAVMRRFIELATNYFREAWSNVVEFR 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215
           PN E         +      N+ V  I +++ + +V     + IP   +L+  +  L+  
Sbjct: 177 PNFETMETNSQFAQIV--PPNDMVVLITIHIKMGDVDGMMNICIPY-LVLEPVMSKLTTS 233

Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              + +     S + ++   RK  + +V    ++   + T+ + +TL  G V+      K
Sbjct: 234 FWVAASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGDVLQLDTLTK 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +        +    G  GK   ++I+  I  +  
Sbjct: 294 DELVCYVGSNPKFLARPGTAGKRMAVQISGVIEGEDN 330


>gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
 gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
           98-5489]
          Length = 352

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 105/287 (36%), Gaps = 8/287 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 55  RAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 114

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   +++ LLG   +  P    R  S +E  L    + Q+   L +  + 
Sbjct: 115 GTGVLEINPSIAFPMIDRLLGGKGD--PYESTREFSDIELNLLDTILRQMMQNLKEAWAP 172

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  PN++       + +      NE V  + M + I + +    L  P  + L++ L 
Sbjct: 173 ITEIFPNVDVKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 229

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +              VN+   +   K TL++++ L+ G ++    
Sbjct: 230 RLASRDIMLSETSSKKSRNKELQALLGGAKVNVTAMLGETKLTLREILELESGDIVRLDR 289

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 I++ +G+E +   +G      TI + + I  ++  +K  L 
Sbjct: 290 PADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336


>gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
           JJ]
 gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
           JJ]
          Length = 326

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M    D++  S    KF   + S       +   L     N  +   
Sbjct: 60  RFARLASNAMANAMRKRADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  ++E+  G +  + P++  R  + +E+ +  R +      + +      E    L
Sbjct: 120 SRLVFAMVESFFGGAG-SQPKIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEVHIEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  +   + +EN   S ++ +P  T ++     L +  ++
Sbjct: 179 VRSEVNPQFAAIV--PPSDVVIVVTFEVELENAIGSLIVCLPYAT-IEPIRTKLYASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   I  F  +  +  V +  R    + T + +++LK G +I   +         
Sbjct: 236 ERLEVDHAWIARFKERLMETPVEMLVRFGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    G V  N   +I
Sbjct: 296 VQGVRKFRGIPGLVKSNKAFQI 317


>gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
 gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
          Length = 334

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 104/289 (35%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   + S  +  + +   +
Sbjct: 55  RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFEV 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + N+   +L+ ++G    ++ ++ +  L+ +E ++      +  A    
Sbjct: 111 PPLDGHVLLEVNPNIAYAMLDRVMGGRGASMDKVEH--LTEIETRIMSSLFDKAFAHWRD 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  E  P   DF       +      N+ V  I++N  I        + IP   +L+
Sbjct: 169 AWESVAEVDPLFVDFEVNPQFLRMI--APNDTVVVISLNTQIGEARGMMNVCIPH-VVLE 225

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + + +S +      R+     + I   +     T+ + + L++G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAGRIERRIRAAQLPIVAELGTAVVTVGEFLQLEVGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I          ++       +  + G+  K   ++I   I   ++S   
Sbjct: 286 IQLKQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGGEESYDE 334


>gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125]
 gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125]
          Length = 330

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 109/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           ++I +I  +        L   F  ++   V IS  S     +   I S  +  + +    
Sbjct: 53  RSISRIHENFAR----LLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFEP 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +     F I  + N+   +L+ LLG    ++ ++ N  L+ +E ++  +   +      +
Sbjct: 109 APLDGRFLIEVNPNVAYAMLDRLLGGQGVSVNKVDN--LTEIETRIMSQLFQRTLDSFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  E  P ++         +  +   NE V  I+++ TI   +    + +P   +L+
Sbjct: 167 AWSTVIELEPEMDAVEVNPQFLQMVS--PNETVVVISLSTTIAETSGMINICLPH-VVLE 223

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS     Q K + +    +D    +  Q  + I T +   + T+ + + L IG V
Sbjct: 224 EVLPKLSVHYWMQEKKKQRQPGELDSIEHRVRQAPLLIQTELGRSEITIHEFLHLGIGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I           +   G   Y  + G+   +  +++TD I    +
Sbjct: 284 IELDQSIHEPLNVRVGGHLKYLAQPGKKKNHLAVQVTDVIEEAAE 328


>gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555]
 gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016]
 gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555]
 gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 331

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 102/284 (35%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKVESVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S       +   V  +++ LLG S     +   R  + ++K + K     + + L  
Sbjct: 109 PPLSGTVLFEINPQFVFEIIDLLLGGSGT--GKYKAREFTDIDKNIIKVVNEGLISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E    +E          N     N+ +  I+ ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVETEVEGIET--NPALNQTLAPNDPIALISFSVELGKSTTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    Q+  E    +  +    +   + +++   +   + T+ + + L IG V+
Sbjct: 225 VLDKLVVQYWFQDGDEEVLAESREKLRERLNIVGIHLTAVLGTVEVTVNEFLNLNIGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               +      L    K  Y  + G +GKN  I I D I+ D +
Sbjct: 285 TLKEKTTDPVKLMLEDKIYYYGKPGIIGKNMGIEILDIIDKDVE 328


>gi|197285496|ref|YP_002151368.1| flagellar motor switch protein FliM [Proteus mirabilis HI4320]
 gi|227355987|ref|ZP_03840379.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
 gi|194682983|emb|CAR43414.1| flagellar motor switch protein [Proteus mirabilis HI4320]
 gi|227163975|gb|EEI48877.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
          Length = 343

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 97/307 (31%), Gaps = 10/307 (3%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
            +  P  P    R+  +    +++E I+      ++  L  + +       DI+    + 
Sbjct: 41  PDIQPYDPNTQRRVVRER--LQSLEIINERFARQFRMGLFNMLR----RSPDITVGGIKI 94

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +     +       +   L             NLV   ++NL G        +  R  
Sbjct: 95  HPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGREF 154

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           +  E+++  + +            +  +         ++     N     N+ V T    
Sbjct: 155 TNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVR-SEMQVKFTNITSSPNDIVVTTPFQ 213

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRI 246
           + I ++   F + IP   +       ++   ++  Q     +D    +     + +    
Sbjct: 214 VEIGSMVGEFSICIPFAMIEPLRERLINPPIENLRQEDSVWLDSLVNQVKHSELELVANF 273

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                 L  V+TLK G V+P    E    I   +G  + + + G V   Y +R+   IN 
Sbjct: 274 TDIPLRLSKVLTLKKGDVLPIDKPE--RLIAHVDGVPVLTSQYGTVHGQYALRVEHLINP 331

Query: 307 DQKSLKN 313
              +L  
Sbjct: 332 VLNALDE 338


>gi|37525864|ref|NP_929208.1| flagellar motor switch protein FliM [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785293|emb|CAE14234.1| Flagellar motor switch protein FliM [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 334

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 89/276 (32%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 58  ERFARHFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + +LV   ++NL G       ++  R  +  E+++  R +           S   +    
Sbjct: 118 APSLVYIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLRMALDSYRDAWSAIFKIEVE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                ++     N     N+ V T    + I  ++  F + IP   +++     L++   
Sbjct: 178 YIR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALSGEFNICIPFA-MIEPLRERLTNPPL 235

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              + ED    +   ++     + +          L  ++ L+ G ++P    E    I+
Sbjct: 236 ENARQEDSLWRESLVKQVQHSELELVANFADIPLRLSKILQLQPGDILPIDKPE--RLIV 293

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + + + G +   Y +R+   IN    +L  
Sbjct: 294 HVDGVPVLTSQYGTLNGQYALRVEHLINPVLNALDE 329


>gi|119953077|ref|YP_945286.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135]
 gi|119861848|gb|AAX17616.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135]
          Length = 352

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 103/283 (36%), Gaps = 9/283 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E V  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMVILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K    ++ +   I   K  ++++++L  G V+   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDILREKLENTDMLLVAEIGEVKLKVREILSLAKGDVLNLE 298

Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +       IL    K+ + C +G VG   ++++T+++   +  
Sbjct: 299 NSPIDKDLILKVGTKQKFKCRMGLVGNKISVQVTEKVGEVEDF 341


>gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1]
          Length = 326

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 11/283 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++     V +   + ++  +S   ++     +    + 
Sbjct: 52  RTLEIIFEHYGRLLTTNLPVYLRKS----VQVEVMNSEAVTYSEFTNALSNPVLLGIVNF 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    N  +  ++ L   +++ +LG   ++      R  S +E  + +R +     +L +
Sbjct: 108 APLQGNIIVEMASGLGYAIVDRMLGGRGDS--LDKTREFSEIELLIIERILVICINLLQE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 + SP+LE         +  +   +E +  I MN+ I +V     + +P  TL  
Sbjct: 166 PWQNVLDISPHLERIETNSQYAQIIS--PSEVIAIITMNIKIGDVEGLMNICLPYITLES 223

Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 +    S  Q+ D     +       +  + +   +     ++KD  TL  G VI
Sbjct: 224 VIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQIPVKAVLGKSLISVKDFSTLVPGDVI 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                      +     + ++   G  G  Y +RIT  +  +Q
Sbjct: 284 RLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRITSVVREEQ 326


>gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 329

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 105/286 (36%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    +     +  +   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 SPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P LE         +  +   NE V  + + M +        + IP   +++
Sbjct: 167 AWENIVDLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICIPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      ++IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328


>gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
 gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
           16294]
          Length = 366

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 107/288 (37%), Gaps = 8/288 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 55  RAFRGVHDKMARSLASQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLE 114

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +  I  + ++   +L+ LLG   E  P   +R  S +E  L +  +  + + L +    
Sbjct: 115 GSGIIEINPSIAFPMLDRLLGGKGE--PFDASREFSDIELSLFETILRVMMSTLKEAWGP 172

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  P +E       + +      NE V  + M + I + +    +  P  + L+  L 
Sbjct: 173 VMEIYPTIESKESSPNVVQIV--AQNEIVVMVVMEIIIGHSSGMMNICYPVIS-LEPVLP 229

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +              VN++  +     ++ D++ LK+G VI    
Sbjct: 230 KLASRDLMLNETSSKKSRNTELKVLLGGAKVNVEANLGDADLSMHDILELKVGDVIRLSS 289

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                  ++ +GKE +  E+G      +I IT+ I  ++ ++K  L  
Sbjct: 290 AANDIVTVAVDGKERFRGEIGLRRFRKSISITEIIETEKDTVKRALEN 337


>gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4]
          Length = 326

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 108/286 (37%), Gaps = 17/286 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++    +V +   + ++  +S   ++     +    + 
Sbjct: 52  RTLEIIFEHYGRLLSTNLPVYLRK----NVQVEVMNSEAVTYSEFSNALSNPVLLGIVNA 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S  + +  I  + NL   +++ +LG     +P    R  S +E  + +R       +L +
Sbjct: 108 SPLNGSIVIEMAQNLGYAVVDRMLGGKG--VPLDKPRDFSEIELLIIERIFNVAVDLLVE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E  P LE         +  +    E +  + +N+ I +V     + +P  TL  
Sbjct: 166 PWENVCELEPRLERIETNSQFAQIIS--PTEMIALVTLNVKIGDVEGLLNVCLPYLTLES 223

Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               L T     S Q K E Q  + I+       +  + I   +     ++ D + L++G
Sbjct: 224 IMDKLNTKYWYSSLQEKDEQQYTETIEAL---ISKAPMPIKAVLGNSSISVNDFLGLQVG 280

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            +I    +      +     + ++   G  G +Y +RIT  I  +Q
Sbjct: 281 DIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326


>gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
 gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
          Length = 349

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 100/294 (34%), Gaps = 11/294 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +    +  S    +   L  + +      +++   S     +S  + S +    F+   
Sbjct: 57  MRAFRALHESFSREFGAALSGMLRSI----IEVKLISVDQLTYSEFVFSLENPTCFNLLE 112

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
             +   +  +  S +++  +++ LLG    +     NR+L+ +E +L  R        + 
Sbjct: 113 SETLDGHIILDISPSIIFPIIDRLLGGDGHSHGAYPNRALTEIEIRLVSRITGLAIEGIE 172

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              S   +    +        L +      NE +  I+  +T+        L IP  T +
Sbjct: 173 SAWSNLCDWKLRVSQVESNPQLVQIV--PPNEVIVLISFEVTMGETRGIINLCIPFNT-I 229

Query: 208 KTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQ 263
           +     L+S   S    +S DL      +       I  R+ L   K T  +V+ L +G 
Sbjct: 230 EPLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVLNLAVGD 289

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           VI           +   G  +++   G    +  I I   +   +  ++  L K
Sbjct: 290 VIMCNKGSAQSLTVELEGSPVFTAFPGVYKGHKAISIEKMLAIPRDVIEERLKK 343


>gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 329

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 105/286 (36%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTV----VQMDILSVEQLTYYEFSNSLSNPVVMGIVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    +     +  +   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 SPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P LE         +  +   NE V  + + M +        + +P   +++
Sbjct: 167 AWENIVDLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      ++IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328


>gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
 gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
          Length = 353

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 103/284 (36%), Gaps = 8/284 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPVGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++V  +++ LLG    +      R  S +E  L    + Q+  +L    +   E
Sbjct: 117 VLEVNPSIVFPMIDRLLGGKGSSY--DQTREFSDIELNLLDTILKQVMQILKDIWNPVTE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE V  + M + I +      L  P  + ++  L  + 
Sbjct: 175 FFPTIDAKESSANVVQIV--AQNEIVIMVVMEIVIGHSRGMMNLCYPVIS-IEGILSKMG 231

Query: 216 SQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +++      +  +             +V++   +   + TLK+V+ L +G  I       
Sbjct: 232 NRDVMLTETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTIRLNKVAN 291

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +++ + KE Y   +G  G   TI+I + I+ ++  +K  L 
Sbjct: 292 DTVVVNIDKKERYLATVGYQGYRKTIKIKEVIHTEKDRVKEVLE 335


>gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198]
 gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198]
          Length = 357

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 8/278 (2%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
             + L       M   V+I   S     +   + S      F+  S+        +  + 
Sbjct: 63  MARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           ++V ++++ LLG   ET    + R  S +E  L    + QI   L        E  P+++
Sbjct: 123 SIVFSMIDRLLGGKGETY--DHQREFSDIELNLLDTILRQIMQTLKDAWGPVAEIFPSVD 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS- 220
                  + +      NE V  + M M I + +    L  P  + L+  L  L S++   
Sbjct: 181 AKESSPNVVQIV--AQNEVVIMVVMEMIIGHSSGMLSLCYPVIS-LEAVLSRLGSRDLVL 237

Query: 221 --ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
              +  +              +++   +     +L++++ L+ G +I           ++
Sbjct: 238 SETSSKKSRNKELQALIGGAGISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVA 297

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
            +GK+ +  ++G      TIRI + I  ++  +K  L 
Sbjct: 298 IDGKDKFLADIGLQRYRKTIRIKEAIRTEKDQVKEILE 335


>gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
           33656]
 gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
           33656]
 gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629]
          Length = 326

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 11/283 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++     V +   + ++  +S   ++     +    + 
Sbjct: 52  RTLEIIFEHYGRLLTTNLPVYLRKS----VQVEVMNSEAVTYSEFTNALSNPVLLGIVNF 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    N  +  ++ L   +++ +LG   ++      R  S +E  + +R +     +L +
Sbjct: 108 APLHGNIIVEMASGLGYAIVDRMLGGRGDS--LDKTREFSEIELLIIERILVICINLLQE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 + SP+LE         +  +   +E +  I MN+ I +V     + +P  TL  
Sbjct: 166 PWQNVLDISPHLERIETNSQYAQIIS--PSEVIAIITMNIKIGDVEGLMNICLPYITLES 223

Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 +    S  Q+ D     +       +  + +   +     ++KD  TL  G VI
Sbjct: 224 VIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQIPVKAVLGKSLISVKDFSTLVPGDVI 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                      +     + ++   G  G  Y +RIT  +  +Q
Sbjct: 284 RLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRITSVVREEQ 326


>gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 329

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 106/286 (37%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    +     +  +   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 SPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELVLIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P LE         +  +   NE V  + + M +  V     + +P   +++
Sbjct: 167 AWENIVDLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEVEGMANICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      ++IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328


>gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
 gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
 gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1]
          Length = 326

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 108/286 (37%), Gaps = 17/286 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++    +V +   + ++  +S   ++     +    + 
Sbjct: 52  RTLEIIFEHYGRLLSTNLPVYLRK----NVQVEVMNSEAVTYSEFSNALSNPVLLGIVNA 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S  + +  I  + NL   +++ +LG     +P    R  S +E  + +R       +L +
Sbjct: 108 SPLNGSIVIEMAQNLGYVVVDRMLGGKG--VPLDKPRDFSEIELLIIERIFNVAVDLLVE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E  P LE         +  +    E +  + +N+ I +V     + +P  TL  
Sbjct: 166 PWENVCELEPRLERIETNSQFAQIIS--PTEMIALVTLNVKIGDVEGLLNVCLPYLTLES 223

Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               L T     S Q K E Q  + I+       +  + I   +     ++ D + L++G
Sbjct: 224 IMDKLNTKYWYSSLQEKDEQQYTETIEAL---ISKAPMPIKAVLGNSSISVNDFLGLQVG 280

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            +I    +      +     + ++   G  G +Y +RIT  I  +Q
Sbjct: 281 DIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326


>gi|253990101|ref|YP_003041457.1| flagellar motor switch protein FliM [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781551|emb|CAQ84714.1| flagellar motor switch protein flim [Photorhabdus asymbiotica]
          Length = 334

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 89/276 (32%), Gaps = 6/276 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 58  ERFARHFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + +LV   ++NL G       ++  R  +  E+++  R +            +  +    
Sbjct: 118 APSLVYIAVDNLFGGDGRFPTKVEGREFTNTEQRVINRMLRMALDSYRDAWDSIFKIEVE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                ++     N     N+ V T    + I  ++  F + IP   +++     L++   
Sbjct: 178 YVR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALSGEFNICIPFA-MIEPLRERLTNPPL 235

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              + ED    +   ++     + +          L  ++ L+ G ++P    E    I+
Sbjct: 236 ENVRQEDSLWRESLVKQVQHSELELVANFVDIPLRLSKILQLQPGDILPIDKPE--RLIV 293

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +G  + + + G +   Y +R+   IN    +L  
Sbjct: 294 HVDGVPVLTSQYGTLNGQYALRVEHLINPVLNALDE 329


>gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 352

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 8/287 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 55  RAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 114

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   +++ LLG   +  P    R  S +E  L    + Q+   L +  + 
Sbjct: 115 GTGVLEINPSIAFPMIDRLLGGKGD--PYESTREFSDIELNLLDTILRQMMQNLKEAWAP 172

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  P ++       + +      NE V  + M + I + +    L  P  + L++ L 
Sbjct: 173 ITEIFPTVDVKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 229

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +              VN+   +   K ++ +++ L++G ++    
Sbjct: 230 RLASRDIMLSETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIVRLDR 289

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 I++ +G+E +   +G      TI + + I  ++  +K  L 
Sbjct: 290 PADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336


>gi|322379819|ref|ZP_08054116.1| flagellar motor switch protein FliM [Helicobacter suis HS5]
 gi|321147787|gb|EFX42390.1| flagellar motor switch protein FliM [Helicobacter suis HS5]
          Length = 353

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 103/284 (36%), Gaps = 8/284 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+     N 
Sbjct: 57  RSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPVGGNG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++V  +++ LLG           R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 ILEVNPSIVFPMIDRLLGGKGS--AYDQMREFSDIELNLLDTILKQVMQILKEIWSPVTE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE V  + M + I +      L  P  + ++  L  + 
Sbjct: 175 FYPTIDAKESSANVVQIV--AQNEIVIMVVMEIVIGHSRGMMNLCYPVIS-IEGILSKMG 231

Query: 216 SQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +++      +  +             +V++   +   + TLK+V+ L +G  I       
Sbjct: 232 NRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTIRLNKVAN 291

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +++ + KE Y   +G  G   TI+I + I  ++  +K  L 
Sbjct: 292 DVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335


>gi|238782828|ref|ZP_04626857.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
 gi|238716251|gb|EEQ08234.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
           43970]
          Length = 332

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 9/284 (3%)

Query: 28  KKTIEKISSSL---GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
           ++ + +   SL      + +         +    DI+  + +   +     +       +
Sbjct: 45  RRVVRERLHSLEIINERFARQFRIGLFNLLRRSPDITAGNIKIQPYHDFARNLPVPTNLN 104

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              ++          S NLV   ++NL G       +   R  +  E+++  R +A    
Sbjct: 105 LVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVINRMLAMALE 164

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
             +   S+  +         +I     N     N+ V T    + I      F + IP  
Sbjct: 165 AYDFAWSSIFKLKTEYVR-AEIQVKFTNITSSPNDIVVTTPFYVEIGPHRGEFDICIPFS 223

Query: 205 TLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            +++     L+S     S  + +   +  A +  +  + +  +     T L +++++K G
Sbjct: 224 -IIEPLRELLTSPPMESSRQEEKQWRNTLASQVRETELELVAKFADISTRLSNIMSMKEG 282

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            VIP   +E   A +  +G  ++S + G + K Y +++   +N 
Sbjct: 283 DVIPIDKKESIEACV--DGVPVFSGKYGYMNKQYALKVEKILNP 324


>gi|203284199|ref|YP_002221939.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|203287738|ref|YP_002222753.1| flagellar motor switch protein [Borrelia recurrentis A1]
 gi|201083642|gb|ACH93233.1| flagellar motor switch protein [Borrelia duttonii Ly]
 gi|201084958|gb|ACH94532.1| flagellar motor switch protein [Borrelia recurrentis A1]
          Length = 352

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 103/283 (36%), Gaps = 9/283 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E V  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMVILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K    N+ +   I   K  ++++++L+ G VI   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDVLREKLEYTNMPLVAEIGEVKLKVREILSLEKGDVINLE 298

Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +       IL    KE + C +G VG   +++IT ++   +  
Sbjct: 299 NSSIDQDLILKVGTKEKFKCRMGLVGNKISVQITRKVGEVEDF 341


>gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
 gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
          Length = 326

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 93/271 (34%), Gaps = 8/271 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M    D++  S    KF   + S       +   L     N  +   
Sbjct: 60  RFARLASNAMANAMRKRADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  ++E+  G +  + P++  R  + +E+ +  R +      + +      E    L
Sbjct: 120 SRLVFAMVESFFGGAG-SQPKIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEVHIEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  +   + +EN   S ++ +P  T ++     L +  ++
Sbjct: 179 VRSEVNPQFAAIV--PPSDVVVVVTFEVELENAIGSLIVCLPYAT-IEPIRSKLYASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   I  F  +  +  V +  R    + T + +++LK G +I   +         
Sbjct: 236 ERLEVDHAWIARFKERLMETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI--TDRINFD 307
             G   +    G V  N   +I   + I+F+
Sbjct: 296 IQGVRKFRGIPGLVKSNKAFQIVKEEEIHFE 326


>gi|322378965|ref|ZP_08053379.1| flagellar motor switch protein FliM [Helicobacter suis HS1]
 gi|321148641|gb|EFX43127.1| flagellar motor switch protein FliM [Helicobacter suis HS1]
          Length = 353

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 103/284 (36%), Gaps = 8/284 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+     N 
Sbjct: 57  RSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPVGGNG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++V  +++ LLG           R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEVNPSIVFPMIDRLLGGKGS--AYDQMREFSDIELNLLDTILKQVMQILKEIWSPVTE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE V  + M + I +      L  P  + ++  L  + 
Sbjct: 175 FYPTIDAKESSANVVQIV--AQNEIVIMVVMEIVIGHSRGMMNLCYPVIS-IEGILSKMG 231

Query: 216 SQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +++      +  +             +V++   +   + TLK+V+ L +G  I       
Sbjct: 232 NRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTIRLNKVAN 291

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +++ + KE Y   +G  G   TI+I + I  ++  +K  L 
Sbjct: 292 DVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335


>gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
 gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
          Length = 331

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 106/289 (36%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +       +L   F  ++   V I+    +   +   I S  +  + +    
Sbjct: 52  RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +    N+   +L+ LLG +     ++   +L+ +E  + +R  ++    L +
Sbjct: 108 EPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPSKVA--ALTEIETTIMERIFSRTFDSLQE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              T  +  P LE         +  +   NE +  I+++  I +      L IP   +L+
Sbjct: 166 AWKTVLDIEPRLEAMETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVLE 222

Query: 209 TTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+        ++++ + ID    +  +  + I   +   +  + + + L +G V
Sbjct: 223 PIMARLSTHQWFTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDV 282

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I      K    +    K  +    G V     ++I + +N   + +  
Sbjct: 283 ISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVAVQIDEIVNEGVEEIDE 331


>gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
 gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
           18818]
          Length = 353

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 109/287 (37%), Gaps = 8/287 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +   S+     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 54  RAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLE 113

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   +++ LLG   +  P   +R  S +E  L    + QI   L +  S+
Sbjct: 114 GAAILEINPSIAFPMIDRLLGGKGD--PYENSREFSDIELNLLDTLLRQIMQNLKEAWSS 171

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  P+++       + +      NE V  + M + I + +    +  P  + L+T L 
Sbjct: 172 ITEIFPSVDAKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMSICYPVIS-LETVLS 228

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +             NV +   +     +LK+V+ L++G ++    
Sbjct: 229 RLASRDLMLSDTSSKKSRNKELQALIAGANVVVSGYLGNATLSLKEVLDLQVGDIVRLDR 288

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 ++S +G+E Y   +G      T++I + I  ++  +K  L 
Sbjct: 289 AADDTILVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335


>gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 322

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 5/252 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
             L       S  + K   I  +     +    +   W ++        LV    E   G
Sbjct: 60  TSLKFTTDVQSLDTLKADQITQAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFG 119

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           AS   +     R  S +E K+       ++  L+        S    +           T
Sbjct: 120 ASEPMVTNRNGRPFSPIESKVGATFGKLLAYALDGVFGIGDGSLLIFKQTCKAQEFNAET 179

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231
              S  F  +  + +    V +   +++P+    +    +++   ++  +  D       
Sbjct: 180 FNQSQMF--SCTLGVKCGEVETYVNILMPRTCH-RPIQEAVTRALRAPAKRTDPLWAKRL 236

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            ++  +  V I+  I     TL ++ TLK+GQ++P          L +  K +Y C LG+
Sbjct: 237 KQEVSRSRVRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGK 296

Query: 292 VGKNYTIRITDR 303
           +G +++IR+T+ 
Sbjct: 297 IGTSFSIRVTNP 308


>gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens
           MLS10]
 gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens
           MLS10]
          Length = 333

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 109/288 (37%), Gaps = 11/288 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L    L      ++   V IS  S     +   I S  +  + +    
Sbjct: 53  RSLTRIHENFARLLTTQLS----AQLRTFVQISVASVDQLPYDEFIRSVPKQTILNVFEP 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                 F +  + N+   +L+ +LG   E   ++ N  L+ +E K+  +   +      +
Sbjct: 109 YPLDGRFVLEVNPNIAYAMLDRMLGGQGEAYNKVDN--LTEIEAKIMTQLFQRTLETFRE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ET 205
              + +E  P ++D        +  +   NE V  I+ + TI   +    + +P    E 
Sbjct: 167 AWLSVEEIDPMMDDLEVNPQFLQLVS--PNETVVVISFSTTIGESSGMINICLPHVVIEP 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           LL    + L  Q K + +    I+       +  +++  ++   + T+++ V L +G  I
Sbjct: 225 LLPKLSVHLWMQTKKKERKPGEIEALELNIKRAPLDVAVQLGQSEITIEEFVHLAVGDTI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
                      ++  G   Y  + G+V ++  ++I + I  ++     
Sbjct: 285 ELNQSIDELLRMTVGGSPKYKVQPGKVKEHLAVQIVEDIEEEELLYDE 332


>gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 329

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 104/286 (36%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGVVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    +     +  L   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 SPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                    P +E         +  +   NE V  + + M +        + +P   +++
Sbjct: 167 AWENIIHIRPRIEKIETNPQFTQIVS--PNETVALVTITMKVGEAEGMANICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      ++IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328


>gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 329

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 106/286 (37%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTI----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    +     +  +   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 TPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLVNYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P LE         +  +   NE +  + + M +  V     + +P   +++
Sbjct: 167 AWENIVELRPRLEKIETNPQFTQIVS--PNETIALVTIAMKVGEVEGMANICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      ++IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328


>gi|183220997|ref|YP_001838993.1| flagellar motor switch protein FliM [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779419|gb|ABZ97717.1| Flagellar motor switch protein FliM [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 341

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 13/289 (4%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            +    +  ++ +        ++   V +   S     +   I S       +  ++   
Sbjct: 52  IRTLQMMHEIFARLATTGLSAQLRALVVVHVASVDQLTYEEFIRSIPNPTTLAVINMDPL 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +    ++  T+++ L G   E+     NR LS +E  + +  I +I   L +  S
Sbjct: 112 RGSAILEIDPSISFTIIDRLFGGKGESSKV--NRELSDIELSVMEGIIVRILGNLRESWS 169

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
           T  +  P L +        +      N+ V  I +   +  V     L IP  T ++  +
Sbjct: 170 TVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKVGEVERMTNLCIPYIT-IEPII 226

Query: 212 ISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             LS+Q    +  +  +D        +  Q+ + + + +     +L D++ L +G VI  
Sbjct: 227 NKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPLISEVGSVDISLNDLMNLHVGDVIKL 286

Query: 268 LHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
            +   KT  ++    +  +    GRVG    I+I D I   +      L
Sbjct: 287 ENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIGDSI---EDIPDELL 332


>gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 106/281 (37%), Gaps = 13/281 (4%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
           +E I    G L    LP   ++    ++ +   + ++  +    +S     +      + 
Sbjct: 1   MEIIFEHYGRLLSTNLPIFLRK----NIQVEVINSEAVTYMEFSNSLSNPVLLGIVDFAP 56

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
             +N  +  ++NL   +++ +LG   E  P    R  S +E  + +R +     +L +  
Sbjct: 57  LETNIIVEMASNLGFAMVDRMLGGVGE--PLDKVRDFSEIELLIIERVMTSCVELLREPW 114

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
               ++ P LE         +  +   +E +  + +N+ I +V     + +P  T L+  
Sbjct: 115 ENVLDAHPRLERIETNSQFAQIIS--PSEMIAIVTLNIKIGDVEGLMNICLPFIT-LEPV 171

Query: 211 LISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           +  L+++    +Q E     F+        +  + +   +     T+ D   L++G ++ 
Sbjct: 172 MDKLNTKFWYSSQKEKTGASFSDTVEALISRAKIPVKAVLGNSVITVADFSQLQVGDIVK 231

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              +      +       ++   G  GK Y +R+T  I  +
Sbjct: 232 LDTKVDEELDVFVGDIRKFAALPGASGKEYAVRVTQIIREE 272


>gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 325

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M   VD +  S    KF   + S       +   +     N  +   
Sbjct: 60  RFARLATNTMANAMRKRVDFNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALMIID 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
             LV  L+EN  G +  + P++  R  + +E+ +  +    + + L        E +  L
Sbjct: 120 TRLVFALVENFFGGTG-SQPKIEGRDFTPIEQSIVVKVSKMLLSNLEDAWRPVHEVNIEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  +   + +EN   S V+ +P  T ++     L +  +S
Sbjct: 179 TRSEVNPQFATIV--PPSDVVVVVTFEVELENAIGSMVVCLPYAT-IEPIRSKLYASYQS 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +  F  +  ++ V+ +  +   + T + ++ ++ G ++     ++      
Sbjct: 236 ERLEVDHAWLSRFKERLLEIPVDFNVTMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAY 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    G    N   ++
Sbjct: 296 VQGVLKFHGVPGFTKGNKAFQV 317


>gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
 gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
           49957]
          Length = 353

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 89/266 (33%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              + +    ++    + D+     +  +    + +     +     +  W         
Sbjct: 76  RLARLMTSSSRKFTADNADVVIDRTRPVRVGAFLDTVTLPALIGIIRIEEWDGYCLAALD 135

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + L+ ++++ LLG     +  +  R  + +E+   ++ ++ ++  L++       +S  L
Sbjct: 136 SRLIGSIVDILLGGRRNALQPIEGRPYTPIERTFVEKFVSVVTNDLSRAFEAVSPASFRL 195

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           E F         T         T    +T+E        +IP  + L+     LS +   
Sbjct: 196 ERFEITPSYALIT--KPTAAALTFRAEITMEGRGGFIDFLIPYAS-LEPVRDLLSQEVLG 252

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +    D       A +  + +V +   I  +     +V + + G V     R++    + 
Sbjct: 253 KKSGGDTIWRSHLAEELPRASVELTAVIESRTVPFSEVASWQPGSVFVLDKRQEDPVDVF 312

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304
             G  +    L    +   +R+ D +
Sbjct: 313 CQGLMVCRATLATKDERVVLRVEDCV 338


>gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 335

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 108/286 (37%), Gaps = 13/286 (4%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           + +T+  I  +   L   FL    +     ++ +   S     +   + S     + +  
Sbjct: 56  NLRTLHLIHDNYARLISNFLTGYLRT----NISVKVASVDQATYEDFLVSVPTPTLITTF 111

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            L     +  +  +   +  ++  L G S +  P++  R L+ +E  + K+   ++   L
Sbjct: 112 KLHPLKGSMVMETNLQFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENL 169

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            Q  +   +  P +E   +   L +  +   NE V  I     I        L +P E +
Sbjct: 170 AQAWAEIIKVEPEIEALENNPRLHQVLS--PNEIVAIITFTTEILGNNGLINLCLPFE-V 226

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIG 262
           L   L  LS+     + +    + FAR       +  + +   +   +  +++ + +++G
Sbjct: 227 LDPLLAKLSASYWFSHATAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVG 286

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            ++    +      L    ++++  + GRVG+    +IT  I  D+
Sbjct: 287 DIVVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE 332


>gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 329

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 104/286 (36%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGVVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    +     +  L   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 SPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                    P +E         +  +   NE V  + + M +        + +P   +++
Sbjct: 167 AWENIIHIRPRIEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      ++IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328


>gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
           Rt17-B1]
          Length = 329

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 107/285 (37%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +       +L    +    ++V           +   + S       +  + 
Sbjct: 53  RTVQMIHENFARSVSTYLSGKLRSFTSVNVV----GIDQLTYDEYMKSIGNPSFITIFTA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +  +  +  +   +L+ LLG   E I     R  + +E  + K+ I  I   L+Q
Sbjct: 109 REFVGSSILNINLEIFYGILDVLLGGPGEVI--DAKRVPTEIEIGIIKKEIVNILTSLSQ 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ++     P +E        +      SNE V  +   +    +     +  P  ++++
Sbjct: 167 AWASVHPFIPVVESTET--NPQFVQVVPSNEMVLAVTFFVNFGKIEGYMSICWP-SSVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                L++Q+  + + +++             +  +++  +I   K TL +++TL++G V
Sbjct: 224 PIGEKLTTQSWFKIKQKEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEILTLEVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I           +  NGK  +  + G+   NY ++IT  I   ++
Sbjct: 284 IRLREHYDEPIKIEVNGKTKFLGKPGQFKGNYAVKITKVIEEGEE 328


>gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
 gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
           255-15]
          Length = 327

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 105/273 (38%), Gaps = 10/273 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L   F  ++   V  +  + +   +   IHS     + +  +L           
Sbjct: 60  EQFARVLTTHFSAQLRTYVQFTVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEV 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + N+   +L+ LLG   E + ++ N  L+ +E ++  +   +          +  E    
Sbjct: 120 NPNIAYAMLDRLLGGPGEGMNKIEN--LTEIETRILTQLFKRAFVQYGAAWESIAEIEAE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--- 216
            +D        +  +   NE V  +++ +T+  V+ +  + +P  TL +  +  LSS   
Sbjct: 178 YDDLEINPQFLQLVS--PNETVILVSIYVTVGEVSGTLNVCLPFVTL-EPIIPKLSSHFW 234

Query: 217 --QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             Q K ++      +    +     V++   +   + +  +++ L++G  +    R    
Sbjct: 235 MQQEKRKSADNQESEHMQTQLMGSIVDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDP 294

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
             L  + ++++    G  GK+  +++  RI  +
Sbjct: 295 VELFVDDRKMFKARPGLNGKHLALQVLQRIEEE 327


>gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM
           1740]
 gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes]
          Length = 354

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 8/287 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + L       M   V+I   S     +   + S      F+  S+    
Sbjct: 54  RAFRGIHDKMARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 113

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   +++ LLG   +  P    R  S +E  L    + Q+   L +  + 
Sbjct: 114 GTGVLEINPSIAFPMIDRLLGGKGD--PYEATREFSDIELNLLDTILRQMMQNLKEAWAP 171

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             E  P+++       + +      NE V  + M + I + +    L  P  + L++ L 
Sbjct: 172 VAEIFPSVDAKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 228

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +              VNI   +      LK+V+ L +G ++    
Sbjct: 229 RLASRDLMLSETSSKKSRNRELQALLGGAAVNISAVLGGTSLDLKEVLELGVGDIVRLDR 288

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 I++ +G+E Y   +G      T++I + I  ++  +K  L 
Sbjct: 289 PADDTVIVNVDGREKYIATIGLQRYRKTVKIKEVIKTEKDQVKEILE 335


>gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor
           owensensis OL]
 gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor
           owensensis OL]
          Length = 329

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 105/286 (36%), Gaps = 14/286 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V +   S +   +    +S     V    + 
Sbjct: 53  RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    +     +  +   +++ +LG   + I ++  R+ + +E  L +R + Q+     +
Sbjct: 109 APLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLLQQLINYFQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +  P LE         +  +   NE V  + + M +        + +P   +++
Sbjct: 167 AWENIIQLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICLPH-MVIE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS++      +++  +       +K  +  V +   +   + T+++ + L++G V
Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +    R+     +    K  +    GR      I+IT R+   +  
Sbjct: 284 LRLDRRKNQEIEVYVGNKLKFYGVPGRKEGRVAIKIT-RVEEGEDF 328


>gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
           MI-1]
 gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
           MI-1]
          Length = 330

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 100/273 (36%), Gaps = 9/273 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    L   Y + L       +   + I   S     +   I+S     V +  SL+   
Sbjct: 53  RTLHVLHEGYARLLSNFLSGYLRTPITIEIASIGQFTYEEFINSVPSPTVMTIFSLAPLK 112

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +  +  +   +  +++   G   E  P+   R L+ +E  ++ R I ++   L      
Sbjct: 113 GSALMETNLQFLFPIIDLQFGGLGEMPPKT--RELTDIELSVSNRIIKRLLDHLTISWKD 170

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT-IENVASSFVLIIPQETLLKTTL 211
               SP +E      +L +      N+ V  I  +    E V     L +P   LL   L
Sbjct: 171 IMSVSPKVESIDANPHLHQL--MSPNDIVVVITFSTGVAEEVRGLINLCLPYS-LLDPIL 227

Query: 212 ISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
              S  N+    +E          Y   + +V I   +   + T+KD + L++G V+P  
Sbjct: 228 SKFSMANQFTKTTEQDQKELMALEYWLGESDVAISVVMGEAQITVKDFLQLQVGDVLPLG 287

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                   +  + +  Y  ++G VG++  +++T
Sbjct: 288 RGLTQDLDMYVDEELKYKVQVGTVGQSLAVQVT 320


>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
 gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
           BON]
          Length = 335

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 100/280 (35%), Gaps = 12/280 (4%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + ++L       + +   ++  S +   +   ++S  E  V              +
Sbjct: 59  LHENFCRYLSSYLAGFLRIYCQVNIVSVEELTYYEFMNSLPEPVVLGIMDFQPMDGKIVV 118

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
             + N+   +++ +LG S     ++   + S +E  L +R + QI  +L +  +     +
Sbjct: 119 EIAPNISYAMIDRVLGGSGRAAEEMT--AFSEIELALIERILRQIGTLLQESWANVAAIT 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
           P LE         +      NE    + + + + +V     + IP  T+ +     L+++
Sbjct: 177 PKLERIETNAQFAQII--APNETAALVTLMLKVGDVEGMVNICIPHVTI-EPISDELTTR 233

Query: 218 NKSENQSEDLIDP-------FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
               N+ ++  +          ++   + + I   +     ++ D + L  G +I     
Sbjct: 234 FWFSNEKKEKAERDEVSFNTLRKRIENVQIPIRAILGESTISIGDFMQLSPGDIIQLDES 293

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +       +  + G    +  ++ITD I  ++ +
Sbjct: 294 VDNHIKVMVGDITKFYGKPGLRHNHMAVKITDVIYQEEDT 333


>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
 gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
          Length = 331

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 107/284 (37%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V +   S Q   +   IHS     V +   +
Sbjct: 53  RTLELIHDNYARIISNYL----TAQVRTNVKVKVESVQQITYEEFIHSVPNPTVLTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S +     +   V  +++ LLG + +   ++     + ++K + K   A + + L  
Sbjct: 109 PPLSGSVLFEVNPQFVFQIIDLLLGGNGKGKYKVKE--FTDIDKNIIKVVNAGLISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                      +E          N     N+ V  I  ++ + N ++   + IP  ++  
Sbjct: 167 AWEDVMPIETEVEGLET--NPALNQTLAPNDPVALITFSVEMGNSSTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    Q+  E+   +  +    +   ++V +   +     T+++ + L +G V+
Sbjct: 225 VLDKLVVQYWFQDSDEDILNESREKLRNRLDIVDVELTAILGTVDVTVQEFLNLNVGDVL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               +  +   L    K  Y  + G + KN  + I D ++ D +
Sbjct: 285 TLKEKTTSPVKLMVEDKVYYYGKPGVIDKNMGVEILDILDKDVE 328


>gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
           2489]
 gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
           2489]
          Length = 344

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 110/289 (38%), Gaps = 9/289 (3%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            +  S++   + +        ++   V +   S     +   I S       +  ++   
Sbjct: 52  IRTVSNMHETFARLTTTSLSAQLRTLVHVHVASVDQLTYEEFIRSIPTPTTLAVINMDPL 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             N  +  +  +   +++ L G S +T  ++ NR L+ +E+ + +  I +I A + +  +
Sbjct: 112 KGNAVLEIAPEITFIIIDRLFGGSGDTGGKV-NRDLTDIEQSVMEGIIVRILANMREAWT 170

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              +  P L+         +      +E V  + + + I   A    + IP  T ++  +
Sbjct: 171 QVIDLRPRLQQIETNPQFAQIV--PPSEMVILVTLEIKIGEEAGMMNICIPYIT-IEPIV 227

Query: 212 ISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             LSS         + +   +     K   + + +   I      ++DV++L+ G VI  
Sbjct: 228 SKLSSSFWFSSVRRSSTTQYLGTLKEKLADVEMELVADIGSINVPIRDVLSLRTGDVIRL 287

Query: 268 L-HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
              +      LS   K+ + C+ G VGK   ++I ++I+  +      L
Sbjct: 288 NTIKVGEPLTLSVGSKKKFYCQPGVVGKKVAVQIIEKIDEQETENFEEL 336


>gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3]
          Length = 322

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 3/251 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
             L       S  + K + I  +     +    +   W  +        LV    E   G
Sbjct: 60  TSLKFTTDVQSLDTLKANQITQAIGTEALLIYFNSDHWGDDVIFVLDATLVELATEVFFG 119

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           AS   +     R  S VE K+       ++  L+        S    +           T
Sbjct: 120 ASEPMVTNRNGRPFSPVECKVGATFGKLLAYALDGVFGIGDGSLLIFKQTCKAQEFNAET 179

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFA 232
              S  F  +  + +    V +   +++P+            +      +++        
Sbjct: 180 FNQSQMF--SCTLGVKCGEVETRVNILMPRSCHRPIQEAVTRALRTPAKRTDPLWAKRLK 237

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++  +  V+I+  I     TL ++ TLK+GQ++P          L +  K +Y C LG++
Sbjct: 238 QEVSRSRVHIEAFIQQGSMTLNELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKI 297

Query: 293 GKNYTIRITDR 303
           G +++IR+T+ 
Sbjct: 298 GTSFSIRVTNP 308


>gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli
           95/1000]
 gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli
           95/1000]
          Length = 343

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 105/294 (35%), Gaps = 13/294 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ +  +   +    L    +  + + V     S     +   I S       +  S+
Sbjct: 55  RTLQMMHENFARVTTTSLSAQLRTLVGIHV----ASVDQLTYEEFIRSVSNPSTLAIVSM 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +    ++  T+++ L G + E+ P+  NR L+ +E  + +  I +I   L +
Sbjct: 111 DPLKGSSILEIDPSITFTIIDRLFGGAGES-PKNLNRELTDIELSVMEGIIVRILGNLRE 169

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   +  P L          +  +   N+ V  I +   + +V       IP  T ++
Sbjct: 170 AWSQVIDLRPRLGSIETNPQFAQMVS--PNDMVVLITLETKVADVEGMMNFCIPYIT-IE 226

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L   S+Q    +               K   + V     +   +  L D++ L+ G V
Sbjct: 227 PILSKFSAQYWYASVRRGSTSENLKIIKEKLQNIYVETSAELGSMQLPLSDILNLQKGDV 286

Query: 265 IPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + F   +     I     ++ + C  G  G    +++T  ++ +    ++ L K
Sbjct: 287 VKFTETKITDPVIFKIGTRKKFLCRPGISGSRMAVQLTGVMDGETDITEDDLLK 340


>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
          Length = 330

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 101/273 (36%), Gaps = 8/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +   V+++  S     +    +S       +    S     F +  
Sbjct: 60  ENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIIDASPLEGPFLLEL 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NN    +L+ LLG   +   +  +R  + +E  L  + + QI  +L +  S   + +P+
Sbjct: 120 NNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLEEPWSNIIDLTPS 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L          +  +   NE V    +++ I          +P  T L+  +  L+++  
Sbjct: 178 LMRVETNSQFAQIIS--PNETVALCTLSIKINETEGMMNFCMPHLT-LEPIVPKLTTKFW 234

Query: 220 SENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
             +  ++     +    K  +  + +  ++     T+ D++  ++G VI    R      
Sbjct: 235 FSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVIMLDKRYNEPVE 294

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +  + K  +    G   K Y+++IT+ I    +
Sbjct: 295 VIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327


>gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
 gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
 gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
 gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
          Length = 332

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 105/289 (36%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +       +L   F  ++   V I+    +   +   I S  +  V +    
Sbjct: 53  RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTVLNIFEA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +    N+   +L+ LLG +      +   S++ +E  + +R  ++    L +
Sbjct: 109 EPLVGRMVLEVHPNIAYAMLDRLLGGTGIAPSSIS--SMTEIETIIMERIFSRAFDSLQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              T  + SP LE         +  +   NE +  I+++  I +      L IP   +L+
Sbjct: 167 AWKTVLDISPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVLE 223

Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+     ++ +    + +D   ++  +  + I   + + + T+ + + L +G V
Sbjct: 224 PIMSKLSAHQWFISEKKASVPEEVDALKQRVSKAKLPIVAELGVSQLTVSEFLGLSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I           +    K  +    G +     ++I + +    +    
Sbjct: 284 ISLNKPMHDGLSIKVGDKLKFIGSPGTIKDRVAVQIDEIVIEGAEEFDE 332


>gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus
           polymyxa SC2]
 gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
           polymyxa SC2]
          Length = 332

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 106/289 (36%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +       +L   F  ++   V I+    +   +   I S  +  + +    
Sbjct: 53  RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +    N+   +L+ LLG +     ++   +L+ +E  + +R  ++    L +
Sbjct: 109 EPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPTKVT--ALTEIETTIMERIFSRTFDSLQE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              T  +  P LE         +  +   NE +  I+++  I +      L IP   +L+
Sbjct: 167 AWKTVLDIEPRLEAMETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVLE 223

Query: 209 TTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+        ++++ + ID    +  +  + I   +   +  + + + L +G V
Sbjct: 224 PIMARLSTHQWFTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I      K    +    K  +    G V     ++I + +N   + +  
Sbjct: 284 ISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVAVQIDEIVNEGVEEIDE 332


>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
 gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
           B316]
          Length = 327

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++    +V +S  + ++  +S   ++     +    + 
Sbjct: 52  RTLEMIYEHYGRLLSTTLPLYLRK----NVQVSVANSETVTYSEFSNALSNPVILGVINF 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +    N+  + ++ +LG    T      R  + +E  L ++ +     ++ +
Sbjct: 108 LPLQGTIILELQANIGFSFIDRMLGGEGGT--LDKPRPFTDIEMPLIEKLVTICMQLMVE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                   +P +E         +  +    + +  + +N+ I +      + +P  TL  
Sbjct: 166 PWQNVVAINPVMERIETNPQFAQVIS--PTDMIAIVTLNIKIGDTEGLMNVCLPYFTLES 223

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            +             +N  ED  D       +++V +   +     ++ D V L+ G +I
Sbjct: 224 VMDKLNTKFWFSTMQKNADEDYEDTLESMVKRVDVPVKAILGKCNVSVSDFVHLQAGDII 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +R  T   +       ++   G     Y +RIT  +  + +
Sbjct: 284 RLDNRVNTDMQVYVGNIFKFTALPGTAKDKYAVRITSVVREEDE 327


>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
 gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
           BKT015925]
          Length = 331

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 105/284 (36%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V I   + Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNFARIISNYL----TAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S +     +      +++ LLG       +   R  + ++K + K+    + A L  
Sbjct: 109 PPLSGSILFETNPQFAYQIIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 +  P +E          N     NE V  I  ++ +   ++   + IP  ++  
Sbjct: 167 AWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    +    +  E+  +   R+   + + +   +   K T+ + +TL +G V+
Sbjct: 225 VLDKLVVQYWFRENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                  +   +    +     + G +GKN  ++I D I+ D +
Sbjct: 285 TLDALTSSPVKMMVGNQPYLLAKPGTMGKNRGVQILDIIDKDVE 328


>gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
 gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
          Length = 334

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 100/289 (34%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   + S  +  + +   +
Sbjct: 55  RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFEV 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + N+   +L+ ++G     + ++ +  L+ +E ++      +       
Sbjct: 111 PPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVYWRD 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  E  P   DF       +      N+ V  I++N  I        + IP   +L+
Sbjct: 169 AWESVAEVDPLFVDFEVNPQFLRMI--APNDTVVVISLNTQIGEARGMMNVCIPH-VVLE 225

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + + +S +      ++     + I   +     T+ + + L+ G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I          ++       +  + G+  K   ++I   I  D+     
Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDKDDHDE 334


>gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
           WA1]
 gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
           12563]
 gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
           WA1]
 gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
           12563]
          Length = 343

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 102/294 (34%), Gaps = 13/294 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ +  +   +    L    +  + + V     S     +   I S       +  S+
Sbjct: 55  RTLQMMHENFARVTTTSLSAQLRTLVGIHV----ASVDQLTYEEFIRSVSNPSTLAIVSM 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +    ++  T+++ L G      P+  NR L+ +E  + +  I +I   L +
Sbjct: 111 DPLKGSSILEIDPSITFTIIDRLFGG-PGESPKNLNRELTDIELSVMEGIIVRILGNLRE 169

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   +  P L          +  +   N+ V  I +   + +V       IP  T ++
Sbjct: 170 AWSQVIDLRPRLGSIETNPQFAQMVS--PNDMVVLITLETKVADVEGMMNFCIPYIT-IE 226

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L   S+Q    +               K   + V     +   +  L D++ L+ G V
Sbjct: 227 PILSKFSAQYWYASIRRGSTSENLKIIKEKLQNIFVETSAELGSMQLPLSDILNLQKGDV 286

Query: 265 IPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + F   +     I     ++ + C  G  G    +++T  ++ +    ++ L K
Sbjct: 287 VKFTDTKITDPVIFKIGNRKKFLCRPGISGSRMAVQLTGVMDGEADITEDDLLK 340


>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
           DSM 12653]
          Length = 330

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 101/273 (36%), Gaps = 8/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +   V+++  S     +    +S       +    S     F +  
Sbjct: 60  ENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIIDASPLEGLFLLEL 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +NN    +L+ LLG   +   +  +R  + +E  L  + + QI  +L +  S   + +P+
Sbjct: 120 NNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLEEPWSNIIDLTPS 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L          +  +   NE V    +++ I          +P  T L+  +  L+++  
Sbjct: 178 LMRVETNSQFAQIIS--PNETVALCTLSIKINETEGMMNFCMPHLT-LEPIVPKLTTKFW 234

Query: 220 SENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
             +  ++     +    K  +  + +  ++     T+ D++  ++G VI    R      
Sbjct: 235 FSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVIMLDKRYNEPVE 294

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +  + K  +    G   K Y+++IT+ I    +
Sbjct: 295 VIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327


>gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
 gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
          Length = 322

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 91/252 (36%), Gaps = 5/252 (1%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
             L       S  + K   I  +     +    +   W  +        L+  + E   G
Sbjct: 60  TSLKFTTDVQSLDTLKADQITQAIGTEALLIYFNSDCWGDDVIFVLDATLIELVTEVFFG 119

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           AS   +     R  S  E+K+ +     ++  ++        S    +           T
Sbjct: 120 ASEPIVTNRNGRPFSPTERKVGETFGKLLAYAIDGVFGVGDGSLLIFKQTCKAQEFNAET 179

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231
              S  F  +  + +    V +   +++P+    +    +++   +S  +  D       
Sbjct: 180 FNQSQMF--SCTLGVKCGEVEAKVNILMPRSCH-RPIQEAVTRALRSPAKRTDPLWAKRL 236

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
            ++  +  V I+  I     TL ++  LK+GQV+P     +    L +  K +Y C LG+
Sbjct: 237 KQEVSRSRVRIEAFIQQGSMTLNELSILKVGQVLPLPANAEKQIRLRSGNKSLYKCSLGK 296

Query: 292 VGKNYTIRITDR 303
           +G +++IR+T+ 
Sbjct: 297 IGTSFSIRVTNP 308


>gi|224534350|ref|ZP_03674928.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S]
 gi|224514452|gb|EEF84768.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S]
          Length = 352

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E +  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K     + +   I   K  ++++++L  G V+   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLNKGDVLNLE 298

Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                    L    KE + C +G +G   +++IT++I 
Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIG 336


>gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
           BI429]
 gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
           BI429]
          Length = 329

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 108/282 (38%), Gaps = 11/282 (3%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
           E+    L   + + L   F  ++   V ++        +   I S K     +  S   +
Sbjct: 52  ERTLQMLHENFARTLSTYFSGRLRSFVAVNLVGIDQMTYDEFIKSIKNPSFITIFSAKEF 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +     +   +LE LLG          NR  +  E ++ ++ +  I   L+Q  +
Sbjct: 112 VGSAVLDIDLAIFYGILEILLGGPGSMTE--INRPPTETEIEVMRKEVVNILTNLSQAWT 169

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           T     P +E    I+   +    ++ NE V  I   + I NV     +  P  +L++  
Sbjct: 170 TVYSFVPVIE---AIETNPQFVQVVALNEMVLVITFFVNIGNVEGYVNICWP-SSLIEPI 225

Query: 211 LISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
              L++Q+  + +    SE+ +        +  V +   I     TL D++ L++G VI 
Sbjct: 226 GEKLTTQSWFKTKQKVVSEEDMKALKENLARTIVELSATIGETNLTLWDILNLEVGDVIR 285

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               ++    +  NGK+ +    G     Y ++I +  + ++
Sbjct: 286 LNTFKEDPLKIKLNGKDKFLGAPGVFKGKYAVKILEVFDEEE 327


>gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
 gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
 gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens
           KN400]
          Length = 328

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
                ++   V+I      S KF   I +       +            I   + LV T+
Sbjct: 66  GTLSNRLGRIVEIKKLGAGSYKFDDFIQTLPSPVCMAIYKADPLKGAALIAFDSTLVFTI 125

Query: 108 LENLLGASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           ++ +LG +   ++    NR  +++E +L ++ +  +   L +  +    +  +L     +
Sbjct: 126 VDCILGGTGMTSVQTSANRMFTSIELRLVQKIVQDMLVDLEKAWAPLYAAKMSLLR---M 182

Query: 167 DYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQ 223
           +   +  N +  E+ V T+ M + I+ +    V  +P  T ++     L S  + +    
Sbjct: 183 EMNPRLVNIVPPEYQVVTMEMQIQIDQLEGKMVFAVPYMT-IEPIRDKLKSGAQFDLMAI 241

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
                   +++  +  +++   +     +L D+++L  G  I       +   +   G  
Sbjct: 242 DPQWSFRLSKELLEAPLDVSVEVGGAVISLNDLLSLVPGDTIMLDTPCTSDLTVKVGGVP 301

Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309
            ++   G    N  ++IT+ +   ++
Sbjct: 302 KFTGMPGIRHGNKALQITNVVGKGEQ 327


>gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
           12260]
 gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
           12260]
          Length = 334

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 102/282 (36%), Gaps = 11/282 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           + I+ I  S        L  + +      V     S     +   I S  +  V     +
Sbjct: 53  RAIQMIHDSFARQLTTSLSTLVRSM----VSAEVASVDQMAYDEFIRSLVQPTVIGVLEM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S N  +  + +LV ++++ +LG   E  P    R L+ +E+ + +R + +I   L +
Sbjct: 109 YPLSGNAVLEMNPHLVFSIIDRMLGGKGE--PLRKPRDLTDIERTVVERVMMKILEHLEE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  +     E      +  +       + V  + + + +        L IP   +  
Sbjct: 167 SWSTVVDVRFRFESMESNPFFVQIC--PGTDMVLLVTLKIQVGETEGIMNLCIPYFVMEP 224

Query: 209 TTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 S     +  +   E + D  +++ ++++V +   +     TL DV+ L++  VI
Sbjct: 225 MIDKLSSQHWFASTGKKNLEGIRDMLSKRLHEVSVPLALELGHCALTLGDVLQLQVNDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +      L    +  + C+ G   K+Y   + + +  +
Sbjct: 285 RLDGKATDPLGLRVGNRVKFLCQAGLSEKHYAGSVLEVVQDE 326


>gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
 gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
          Length = 326

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M    D++  S    KF   + S       +   L     N  +   
Sbjct: 60  RFARLASNAMANAMRKRADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  ++E+  G +  + P++  R  + +E+ +  R +      + +      E    L
Sbjct: 120 SRLVFAMVESFFGGAG-SQPKIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEVHIEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  +   + +EN   S ++ +P  T ++     L +  ++
Sbjct: 179 VRSEVNPQFAAIV--PPSDVVVVVTFEVELENAIGSLIVCLPYAT-IEPIRSKLYASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   I  F  +  +  V +  R    + T + +++LK G ++   +         
Sbjct: 236 ERLEVDHAWIARFKERLMETPVELLVRFGRSQITGRQLLSLKPGDILMLENDVDELLEAE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    G V  N   +I
Sbjct: 296 IQGVRKFQGIPGLVKSNKAFQI 317


>gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
 gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
           P7]
          Length = 332

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 104/285 (36%), Gaps = 12/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTVFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S +     +      +++ LLG       +   R  + ++K +       + + L  
Sbjct: 109 PPLSGSVLFETNPQFSFEIIDVLLGGKGT--GKYKAREFTDIDKNIMMVINTGLISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E +  +E          N     NE V  I  ++ +   ++   + IP  ++  
Sbjct: 167 AWDDVLEVNTEIEGLET--NPALNQTLAPNEAVALITFSVEMGKSSTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
            L   ++    Q+ ++    E+      ++   +N+N+   +     T+ D + L +G V
Sbjct: 225 VLDKLVVQYWFQDTNDEAILEESRVKLRQRLNIVNMNLTAVLGTTNITVDDFLRLGVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +    +  T   L    K     + G +GKN  ++I D I+ D +
Sbjct: 285 LTLNDKANTPIKLMVEDKPYCYGKPGVLGKNMGVQILDIIDKDVE 329


>gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus
           HTA426]
 gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
 gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
 gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
 gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
          Length = 334

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 100/289 (34%), Gaps = 13/289 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   L   F    F  ++   V IS  S     +   + S  +  + +   +
Sbjct: 55  RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFEV 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + N+   +L+ ++G     + ++ +  L+ +E ++      +       
Sbjct: 111 PPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVHWRD 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  E  P   DF       +      N+ V  I++N  I        + IP   +L+
Sbjct: 169 AWESVAEVDPLFVDFEVNPQFLRMI--APNDTVVVISLNTQIGEARGMMNVCIPH-VVLE 225

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q + + +S +      ++     + I   +     T+ + + L+ G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           I          ++       +  + G+  K   ++I   I  D+     
Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDEDDHDE 334


>gi|15594623|ref|NP_212412.1| flagellar motor switch protein FliM [Borrelia burgdorferi B31]
 gi|111115103|ref|YP_709721.1| flagellar motor switch protein FliM [Borrelia afzelii PKo]
 gi|195941368|ref|ZP_03086750.1| flagellar motor switch protein FliM [Borrelia burgdorferi 80a]
 gi|216263834|ref|ZP_03435828.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1]
 gi|216264557|ref|ZP_03436549.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a]
 gi|218249869|ref|YP_002374801.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7]
 gi|221217666|ref|ZP_03589134.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a]
 gi|223888930|ref|ZP_03623521.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b]
 gi|224533145|ref|ZP_03673745.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23]
 gi|224533778|ref|ZP_03674366.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a]
 gi|225549106|ref|ZP_03770081.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a]
 gi|225550153|ref|ZP_03771113.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a]
 gi|225552170|ref|ZP_03773110.1| flagellar motor switch protein FliM [Borrelia sp. SV1]
 gi|226320579|ref|ZP_03796139.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805]
 gi|226321596|ref|ZP_03797122.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26]
 gi|3913687|sp|Q57511|FLIM_BORBU RecName: Full=Flagellar motor switch protein FliM
 gi|1165263|gb|AAA85602.1| FliM [Borrelia burgdorferi]
 gi|1185056|gb|AAB58965.1| switch protein [Borrelia burgdorferi]
 gi|2688188|gb|AAC66670.1| flagellar motor switch protein (fliM) [Borrelia burgdorferi B31]
 gi|110890377|gb|ABH01545.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|215979878|gb|EEC20700.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1]
 gi|215981030|gb|EEC21837.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a]
 gi|218165057|gb|ACK75118.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7]
 gi|221192343|gb|EEE18562.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a]
 gi|223885746|gb|EEF56845.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b]
 gi|224511872|gb|EEF82273.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23]
 gi|224513071|gb|EEF83434.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a]
 gi|225369265|gb|EEG98718.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a]
 gi|225370332|gb|EEG99770.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a]
 gi|225371168|gb|EEH00598.1| flagellar motor switch protein FliM [Borrelia sp. SV1]
 gi|226232785|gb|EEH31538.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26]
 gi|226233998|gb|EEH32719.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805]
 gi|312147869|gb|ADQ30528.1| flagellar motor switch protein FliM [Borrelia burgdorferi JD1]
 gi|312149126|gb|ADQ29197.1| flagellar motor switch protein FliM [Borrelia burgdorferi N40]
          Length = 352

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E +  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K     + +   I   K  ++++++L  G V+   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLE 298

Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                    L    KE + C +G +G   +++IT++I 
Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIG 336


>gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
 gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
          Length = 333

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 108/297 (36%), Gaps = 14/297 (4%)

Query: 18  LARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
             R T    D  +++ +I  +       +L   F  ++   V I+    +   +   I S
Sbjct: 41  FKRATRFSKDHIRSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRS 96

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  + +            +    N+   +L+ +LG       ++ N  L+ +E  + +
Sbjct: 97  IPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRMLGGQGMAPSKINN--LTEIETIIME 154

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           R  A+    L +   T  + SP LE         +  +   NE +  I+++  I +    
Sbjct: 155 RIFARAFESLQEAWKTVIDISPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGM 212

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTT 252
             L IP   +++  +  LS+ +   +Q ++ I    +   ++  +  + I   +     T
Sbjct: 213 INLCIPH-VVIEPIMPRLSAHHWFVSQKKERIPEEVEMLEQRVSKAKLPIVAELGESVIT 271

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +K+ + L +G VI           +    K  +    G V     +++   ++   +
Sbjct: 272 IKEFLGLAVGDVISLNKPIDDGLRIKVGEKLKFIGSPGSVKDRIAVQVDLVVSEGAE 328


>gi|51598538|ref|YP_072726.1| flagellar motor switch protein FliM [Borrelia garinii PBi]
 gi|219684519|ref|ZP_03539462.1| flagellar motor switch protein FliM [Borrelia garinii PBr]
 gi|219685746|ref|ZP_03540557.1| flagellar motor switch protein FliM [Borrelia garinii Far04]
 gi|51573109|gb|AAU07134.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219671881|gb|EED28935.1| flagellar motor switch protein FliM [Borrelia garinii PBr]
 gi|219672685|gb|EED29713.1| flagellar motor switch protein FliM [Borrelia garinii Far04]
          Length = 352

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E +  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K     + +   I   K  ++++++L  G V+   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLIAEIGEVKLKVREILSLDKGDVLNLE 298

Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                    L    KE + C +G +G   +++IT++I 
Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIG 336


>gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 342

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 105/273 (38%), Gaps = 9/273 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L   F   +   V +   S +   +   I S  +  V     +   SSN  +  
Sbjct: 61  EFFSRQLTTAFSSFVRTMVSVEVASVEQLSYDEFIKSLVQPTVIVVMEMYPLSSNALLEI 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +  LV  +++ +LG + +T  +   R L+ +E+ + +R + ++  +L +  +T  +    
Sbjct: 121 NPRLVFAIIDRMLGGAGKTTYK--ARELTDIERTVTERVVMRMLELLEESWATIVDLRFR 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           +++     Y  +     +++ V  I + + I +V     + IP    ++  +  LSSQ  
Sbjct: 179 IQNMESNPYFAQIC--PASDVVVVITLQVKIGDVDGFINICIPYFA-IEPVIDQLSSQRW 235

Query: 220 SENQSEDLIDPFARKTYQ--LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCA 275
             +      D    +  +    V +   + +      LKD++ L++G VI          
Sbjct: 236 FVSTGSREDDASQERIIERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVIKLEETYSEPV 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            +    +  +    G     ++++I      ++
Sbjct: 296 KVRVGERVKFLGHAGIYNNKHSVQIIKTFISEK 328


>gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
           100599]
 gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
           100599]
          Length = 331

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 90/274 (32%), Gaps = 9/274 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L   F  ++   V I+  S     +   I S  +  + +            +  
Sbjct: 60  ENYARLLTTYFSAQLRTFVQITVASVDQLPYDEFIRSIPKMTILNIFEAPPLEGRMVLEV 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + N+  T+L+ LLG       ++   +L+ +E  + +R   +     ++      E  P 
Sbjct: 120 NPNIAYTMLDRLLGGQGAIPEKMG--ALTEIETTVMERVFGKALDTFHEAWKQIIELDPY 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            E         +  +   NE V  I+ +  I +      L +P   +L+  +  LS Q  
Sbjct: 178 QEGLEMNPQFMQIVS--PNEIVVVISFSTKIGDTTGMINLCLPH-VVLEPIMTKLSGQYW 234

Query: 220 SENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
              Q +    +       +     + I   +     T+ D + L+ G VI          
Sbjct: 235 FSKQKKTRDEEERLRVEERVKVAKLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKL 294

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +       +  + G       ++I + I   ++
Sbjct: 295 KIKVGNHLKFLGQPGTHKGRVAVQIDEVIEEGEE 328


>gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
 gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
          Length = 328

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 97/256 (37%), Gaps = 7/256 (2%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
               ++   VDI     ++ KF   +         +   +        +   N LV T++
Sbjct: 67  TMSNRLGKMVDIKKDGARTYKFDDFLQILPSPVCMAIYKIEPLKGAALVAMDNTLVFTIV 126

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           +++LG +        NR  + +E +L ++ +      + +  +       NL     ++ 
Sbjct: 127 DSILGGTGAPSIPSNNRLFTPIELRLMEKIVKDALVDMEKAWAPLLAVKMNLLR---MEM 183

Query: 169 LKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSE 225
             +  N + +E+ V T+++ + IE    + +L +P  T ++     L S  + +      
Sbjct: 184 NPRLVNIVPSEYQVVTMSLKIQIEETVGTMILAVPYMT-IEPVRDKLKSGMQVDMMAVDP 242

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
                 + +  +  + I   +     TL +++ L  G  I   +R ++  ++   G   +
Sbjct: 243 QWSYRLSEELAEAPLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELLVKVGGVNKF 302

Query: 286 SCELGRVGKNYTIRIT 301
           +   G    N  ++I+
Sbjct: 303 TGIPGVRDGNKAVKIS 318


>gi|224531918|ref|ZP_03672550.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116]
 gi|224511383|gb|EEF81789.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116]
          Length = 352

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +  SS    + ++        +   V +   S     +   I S       +  ++    
Sbjct: 63  RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +        +   +++ L G   +TI +  +R L+ +E+ + +  I +I A + +  S 
Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            +       E +  + + + I  V       +P  T ++  + 
Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238

Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS++          + + +D    K     + +   I   K  ++++++L  G V+   
Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLE 298

Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                    L    KE + C +G +G   +++IT++I 
Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKISVQITEKIG 336


>gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 106/287 (36%), Gaps = 13/287 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V     + +   +    +S     V S  + 
Sbjct: 53  RTLQIIHDNFSGMLNTFLAGYLRTY----VQAEVLTVEELSYYEFSNSVVNPAVLSIINF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +       +  S ++  TL+E +LG   +   ++  R  + +E  L K  + Q+  ++  
Sbjct: 109 TPLEGQIIVDISPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLMRQVINLMID 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L+         +  +   N+ V  I +N+ I +V     + IP   +++
Sbjct: 167 PWENVIELQPKLDKIETNSQFAQIVS--PNDTVALITLNLKIGDVEGMMNICIPH-IVIE 223

Query: 209 TTLISLSSQNKSENQSEDLID----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS++    N S+ + +       ++  +  V+I  ++     T+KD + L++G V
Sbjct: 224 PILDKLSTKLWFSNSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDFLELQMGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           I   +       +    K  Y    G       +++T       +  
Sbjct: 284 IMLDNPVDKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDQKGDEIY 330


>gi|290475711|ref|YP_003468600.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
 gi|289175033|emb|CBJ81836.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus bovienii SS-2004]
          Length = 335

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 83/275 (30%), Gaps = 4/275 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +         +    DI+  + +   +     +       +   L           
Sbjct: 59  ERFARQFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             +LV   ++NL G       ++  R  +  E+++  R +            +  +    
Sbjct: 119 EPSLVYIAVDNLFGGDGRFPTKVEGREFTYTEQRVINRMLKLALDAYRDAWDSIFKIEVE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                ++     N     N+ V T    + I  +   F + IP   +        +   +
Sbjct: 179 YVR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALCGEFNICIPFAMIEPLRERLTNPPVE 237

Query: 220 SENQSE-DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           +  Q E    +   ++     + +          L  ++ L+ G V+P    E    I  
Sbjct: 238 NVRQEEGQWRESLVKQVQHSELELVANFVDIPLRLSKILQLRRGDVLPIERPE--RLIAH 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
            +G  + + + G +   Y +R+   IN    +L  
Sbjct: 296 VDGVPVLTSQYGTLNGQYALRVEHLINPVLNALDE 330


>gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13]
          Length = 332

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 109/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           + + +I  +        L   F  ++   + IS  S     +   I S  +  + +   +
Sbjct: 54  RNLTRIHENFAR----LLTTYFSAQLRTYIQISVASVDQLPYEEFIRSIPKMTILNVFEV 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +       +  +  +   +L+  LG     + ++   SL+ +E KL             +
Sbjct: 110 APLEGRVVLEINPTIAYAMLDRQLGGKGTGVNKVD--SLTEIETKLMTTLFEGAIENFGE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              T  +  P L D        +  +   NE V  I+MN+TI  V     + IP   +L+
Sbjct: 168 AWDTIADIQPFLSDLEVNPQFLQLVS--PNETVIVISMNITIGEVTGMINICIPH-VVLE 224

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+    E +++   D       +      + + T +   + +  D++ + IG V
Sbjct: 225 PVIPKLSAHYWMEEKNKVRQDHEIATLEKAIRATALTVTTELGHSEISFSDLLNITIGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +P   +     I+  + K  +  ++G+V KN  ++I ++I    +
Sbjct: 285 LPLQQKIDEPIIVKVDNKPSFYGQVGQVKKNMAVQILEKIKEGYE 329


>gi|218886491|ref|YP_002435812.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757445|gb|ACL08344.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 326

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   V+++  S    KF   + S       +   +     N  I   
Sbjct: 60  RFARLCTNALSNTVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN  G +  + P++  R  + +E+ +  R I      + +      + S  L
Sbjct: 120 SRLVFALVENFFGGAG-SQPKIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHDVSLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I   + +E    S V+ +P  T ++     L +  ++
Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELETAIGSMVICLPYAT-IEPIRSKLHASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +     +  +  VN+       K T   ++ L++G V+            +
Sbjct: 236 ERLEVDHAWVSRLKERLLETPVNLKIHFGESKITGNQLLRLQVGDVLLLDTDTDDLLECT 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    G V  N   +I
Sbjct: 296 VQGVTKFWGISGTVKANKAFQI 317


>gi|259907613|ref|YP_002647969.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
 gi|224963235|emb|CAX54719.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
 gi|310764881|gb|ADP09831.1| Flagellar motor switch protein FliM [Erwinia sp. Ejp617]
          Length = 332

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 9/284 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83
           ++ I +   SL  +  +   + F+  +        DI+  + +   +     +       
Sbjct: 45  RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 103

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +   L+       +  S  +V   ++NL G       +   R  +  E+++  R +    
Sbjct: 104 NLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQ 163

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                  ST  +         +I     N     N+ V T   ++ I +    F + IP 
Sbjct: 164 EAYEFAWSTIFKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPF 222

Query: 204 ETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            ++     L+S      S  +          +  +  + +        T L +V+  K G
Sbjct: 223 SSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKG 282

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            VIP    E      S  G  +++ + G V   + +++   I  
Sbjct: 283 DVIPLDKPE--LIAASVGGVPVFTAKYGSVNNQFALKVEQMIPS 324


>gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
 gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
           657]
 gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
 gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
           657]
          Length = 331

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +   V  +++ LLG +     ++  R  + ++K + K+    +   L  
Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E    +E          N      E V  I  ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L+  ++    +   E   E        +   +++ +   +     T+++ + L +G V+
Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
               R +    L    +  Y  + G +GKN  ++I D+I+ D +S 
Sbjct: 285 SLETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330


>gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
           Eklund]
 gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
           Eklund]
          Length = 331

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 106/284 (37%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V ++  + Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNFARIISNYL----TAQVRTNVKVNIETVQQITYEEFIHSVPNPTILTVFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S +     +      +++ LLG S     +   R L+ ++K + K+    +   L  
Sbjct: 109 PPLSGSILFETNPQFAYQIIDVLLGGSGTGQYKT--RELTDIDKNIIKQINNGLITNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E  P +E          N     NE V  I  ++ +   ++   + IP  ++  
Sbjct: 167 AWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    +  +    E   +   ++   + + +   +   K  +++ ++L IG VI
Sbjct: 225 VLDKLVVQYWFRENNVESLEGSKEKLKKRMKVVELPMSVVLGSTKLDVREFLSLCIGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                  +   +    +     + G VGKN  ++I D I+ D +
Sbjct: 285 TLDALTSSPVKVMVEDEPYLLAKPGIVGKNKGVQILDIIDKDVE 328


>gi|283477455|emb|CAY73371.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163]
          Length = 334

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 9/284 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83
           ++ I +   SL  +  +   + F+  +        DI+  + +   +     +       
Sbjct: 47  RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 105

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +   L+       +  S  +V   ++NL G       +   R  +  E+++  R +    
Sbjct: 106 NLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQ 165

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                  ST  +         +I     N     N+ V T   ++ I +    F + IP 
Sbjct: 166 EAYEFAWSTIFKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPF 224

Query: 204 ETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            ++     L+S      S  +          +  +  + +        T L +V+  K G
Sbjct: 225 SSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKG 284

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            VIP    E      S  G  +++ + G V   + +++   I  
Sbjct: 285 DVIPLDKPE--LIAASVGGVPVFTAKYGSVNNQFALKVEQMIPS 326


>gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           Hall]
 gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
           Hall]
 gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
           Loch Maree]
 gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
           Kyoto]
 gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402
           065]
          Length = 331

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +   V  +++ LLG +     ++  R  + ++K + K+    +   L  
Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E    +E          N      E V  I  ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L+  ++    +   E   E        +   +++ +   +     T+++ + L +G V+
Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
               R +    L    +  Y  + G +GKN  ++I D+I+ D +S 
Sbjct: 285 ALDTRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330


>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 322

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 5/263 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
               +         +   VD+   +    KF   + S       +   L        +  
Sbjct: 59  ERLARSFRVSLASDIRKIVDVINVNVNITKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVF 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              ++ TL+E   G S +   +   R  + +E+++  + +      + +      +  P+
Sbjct: 119 DAPMIFTLIEFYFGGSGKGYYKPEGREFTPIEQRIIHKVVMMFLESMEEAWKPIFQIKPH 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
                           +  + V      + IE      ++ IP  ++  +K  L S    
Sbjct: 179 FIRTEMNPQFVTIVTPV--DVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLA 236

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++ +      I     +     V ++  +       K ++ LK G ++    R      L
Sbjct: 237 DR-DEMDMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDL 295

Query: 278 SANGKEIYSCELGRVGKNYTIRI 300
              G   +  +LG    NY I+I
Sbjct: 296 LVEGVPKFKGKLGTFKGNYAIKI 318


>gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           Langeland]
 gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
           Okra]
 gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           Langeland]
 gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
           Okra]
 gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
           230613]
          Length = 331

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +   V  +++ LLG +     ++  R  + ++K + K+    +   L  
Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E    +E          N      E V  I  ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L+  ++    +   E   E        +   +++ +   +     T+++ + L +G V+
Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
               + +    L    +  Y  + G +GKN  ++I D+I+ D +S 
Sbjct: 285 ALETKTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330


>gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
 gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM
 gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis]
 gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto
           BEST195]
 gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
          Length = 332

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 99/273 (36%), Gaps = 10/273 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   + IS +S     +   I S     + +   +        +  + 
Sbjct: 63  FARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +  T+++ ++G    +  ++   SL+ +E K+             +   +  +  P + 
Sbjct: 123 TIAYTMMDRVMGGIGISHNKVD--SLTEIETKIISNLFENALGNYKEAWQSIADIEPEMT 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217
           +F      +       NE V  I++N  I  ++    L IP   +L+  +  LS     Q
Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-IVLEPLIPKLSVHYWMQ 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +       +      ++     + +   +   + T+++ ++L++G  I           +
Sbjct: 238 SDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309
               K  +  + GRV +   ++I D  I  +Q 
Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 330


>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
 gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
          Length = 329

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 104/275 (37%), Gaps = 10/275 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L   F  ++   V  S  S +   +   IHS     + +       +  F I  
Sbjct: 60  EHFTRMLTTFFSAQLRTYVQFSVNSVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEV 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + N+   +L+ LLG     + ++   S + +E ++  +   +  +       +  E    
Sbjct: 120 NPNISYAMLDRLLGGPGVEMDKIE--SFTEIEMRILTQLYKRAFSTYGDAWESIAEIKAE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           +          +  +   NE V  I++ +TI  V+ +  + +P  T ++  L  LSS   
Sbjct: 178 MSAVEVNPQFLQLVS--PNETVVLISIGVTIGEVSGTINVCLPFVT-IEPVLSKLSSHYW 234

Query: 220 S-----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                  N S+   +P   +     V + + +     T  D++ L++G  +      K  
Sbjct: 235 MQEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEP 294

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             +     +++  ++G  GK   +++  R+  +++
Sbjct: 295 LSVMVGENKVFKGQVGVSGKRMAVQVLHRVKEEEQ 329


>gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
           2916]
 gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
           2916]
          Length = 331

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +   V  +++ LLG +     ++  R  + ++K + K+    +   L  
Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E    +E          N      E V  I  ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L+  ++    +   E   E        +   +++ +   +     T+++ + L +G V+
Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
               R +    L    +  Y  + G +GKN  ++I D+I+ D +S 
Sbjct: 285 ALETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330


>gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
           CD2]
 gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
           CD2]
          Length = 329

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 95/272 (34%), Gaps = 9/272 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           Y + L       +   V ++  S ++  +    +S     V +    S  S +     + 
Sbjct: 62  YARLLTNFLSGYLRTLVQVAVISVEAIAYYEFNNSISNPAVLAIVDFSPLSGSIIFEMAP 121

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +   L++ +LG     + ++  R  + VE  + +R I Q+  ++ +         P LE
Sbjct: 122 PIAYALIDRILGGKGSPMEKI--REFTEVELAIIERIIIQVLNLMREPWENVIAIRPRLE 179

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                    +  +  +NE V  I +   I +V     + IP   +++  +  LS++    
Sbjct: 180 KIETNAQFAQIIS--ANEMVALITLGAKIGDVEGMINICIPH-MVVEPIVSKLSTKFWFS 236

Query: 222 NQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           N  ++      D    K     V +   +      + D + L+ G VIP          +
Sbjct: 237 NSEKEKTNESKDTIELKIENTKVPVRAVLGRSTILVNDFLELQPGDVIPLDSSVSGNLEI 296

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                  +    G       I++ + +  +++
Sbjct: 297 LVGDLLKFYGTPGVKKNRVAIKVNEVVRGEEE 328


>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
           ferrodiazotrophum]
          Length = 341

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 5/270 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +F        +   V+ S  S +  KF   I         +   L     NF +  
Sbjct: 62  ERFARFFQITLSSTLRKAVEFSPVSTEMIKFGEFIKKIPLPSNINILRLEPMKRNFLLII 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              +V  L+++L G       ++  R  S +E ++ +  + Q      +  +       +
Sbjct: 122 DARMVYLLVDHLFGGVGRGHVKVEGRDFSPIENRITRNILNQAIGDFEKAWAPVHHIGVS 181

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                         +    E V  +   + I+       + IP  T ++     L +  +
Sbjct: 182 YIRSEINPQFSAIVS--PTEMVIALTYRLDIDGQGRPVYICIPYST-IEPIKEKLYTGFQ 238

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAIL 277
           S+    D       +    +V I     L  T   L +V+  K G +I           +
Sbjct: 239 SDQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKI 298

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +      +    G    +  +RI +R+  D
Sbjct: 299 TVEKALRFKARPGVYRSSRAVRIEERVFPD 328


>gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
 gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
          Length = 356

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 99/284 (34%), Gaps = 6/284 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            ++     + L       M   V+I   S     +   + S      F+  SL       
Sbjct: 59  RAIHDKMARSLASDISSLMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSLKPLDGKG 118

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I  + ++V  +++ LLG S    P    R  + +E  L  + +  ++  + +  S   +
Sbjct: 119 VIELNPSIVFPMIDRLLGGSGA--PFETTREFTDIELNLLDQILKVVTQNMKEVWSPIMD 176

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLIS 213
             P +E       + +      NE V  + M + I   +    +  P  T+  L   L +
Sbjct: 177 LYPIIEAKESSPNVVQIV--AQNEIVIMVIMEIIIGQTSGMMNICYPVITIESLLPRLAN 234

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
                   +  +              + ++  +   +  +K V+ L++G +I        
Sbjct: 235 RDLMLNETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDIIKLNRPADD 294

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
             I+  +G+E +  E G      +I+I + +  +   +K  L K
Sbjct: 295 TVIVKVDGREKFIAEFGVRRYRRSIKIKEILKTEHDEIKEILQK 338


>gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
 gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
          Length = 329

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 107/281 (38%), Gaps = 9/281 (3%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
           E+    L   + + L   F  ++   V +         +   + S +     +  S   +
Sbjct: 52  ERTLQMLHENFARSLSTYFSGRLRSFVAVDLVGLDQMTYDEFVKSIRNPSYIAVFSAKEF 111

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
             +  +     +   +LE LLG     +    NR  +  E ++ ++ +  I   L Q  S
Sbjct: 112 VGSAILDIDLEIFFGVLEILLGGPG--MNVEINRPPTDTEIEVMRKEVVNILTNLVQAWS 169

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
           T    +P +E        +      SNE V  I + + I N+     +  P  +L++   
Sbjct: 170 TVYSFTPVIEAIET--NPQFVQIVASNEMVLVITLLLKIGNIEGYINICWP-SSLVEPIG 226

Query: 212 ISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             L++Q+  + +    SE+ +        +  V +   +     TL D++ L++G VI  
Sbjct: 227 EKLTTQSWFKTKQKIVSEEDMKALRENLARTIVELSVAVGETNLTLWDILNLEVGDVIRL 286

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
              ++    +  NGK+ +    G     Y ++I + ++ ++
Sbjct: 287 DTFKEDPLKIKLNGKDKFLGVPGVFKGKYAVKIVEVLDEEE 327


>gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
 gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
          Length = 331

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 13/285 (4%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           T+  I  +   L   +L      ++   V I+    +   ++  I S     + +    S
Sbjct: 54  TLSMIHENFARLLTTYLS----AQLRTVVQINVFFVEQMTYNEFIFSIPNPSLIAVVDFS 109

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                  +  + ++  ++++ LLG   E   +L  R  + +E  + ++  ++++ +L+  
Sbjct: 110 PLKGAAIMEINPSIAFSIIDRLLGGPGEYSGKL--REPTEIETGIIEKVFSKMTRILSDA 167

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
                +    LE         +  +   NE V  I  N  + N      + IP   +L+ 
Sbjct: 168 WKDIADIQTTLEKLETNSQFVQLVS--PNEAVALITFNAKVGNSEGMINICIPH-IVLEP 224

Query: 210 TLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            +  LS++       ++  +        K Y     I   +     T+ + + L  G VI
Sbjct: 225 IIPKLSTRIWLSTSKQEQAETTKQFITEKVYDTKTEIRAELGRTLITVGEFINLATGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 K  A +    K  +S  +G       I+I  +     + 
Sbjct: 285 ALNKNIKDGADIFIKDKLKFSGSIGVHRNKMAIKIQKKFGEGGEF 329


>gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 333

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 10/277 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + + L       +   +DI   S +   +   + S     V    +L     N  I
Sbjct: 59  LHESFSRLLNTYLSASLRTMIDIEVLSVEQMTYQEFVQSMANPSVIGILALPPLKGNIII 118

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
             S ++ +  ++ + G      P +  R L+ +E  + +R I  ++    +  S   E  
Sbjct: 119 ELSTDISLAYIDRIFGGEGR--PGVKPRVLTDIEAAVMRRFIDTVTNYFREAWSNVVEFR 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215
           PN E         +      ++ V  I +++ +  V     + IP   +L+  +  L+  
Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLITIHIKMGEVEGMMNICIPY-LVLEPVMSKLTTS 233

Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              + +     S + +    RK  + +V    ++     T+ + +TL  G V+      K
Sbjct: 234 FWVASSMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGDVLQLDTLTK 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +        +    G  GK   ++I+  I  +  
Sbjct: 294 DELVCYVGSNPKFLARPGTAGKRMAVQISGIIEGEDD 330


>gi|292489155|ref|YP_003532042.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
 gi|292900273|ref|YP_003539642.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291200121|emb|CBJ47247.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291554589|emb|CBA22223.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
 gi|312173313|emb|CBX81568.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC
           BAA-2158]
          Length = 334

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 9/284 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83
           ++ I +   SL  +  +   + F+  +        DI+  + +   +     +       
Sbjct: 47  RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 105

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +   L+       +  S  +V   ++NL G       +   R  +  E+++  R +    
Sbjct: 106 NLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQ 165

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                  ST  +         +I     N     N+ V T    + I +    F + IP 
Sbjct: 166 EAYEFAWSTIFKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFFIEIGSHQGEFNICIPF 224

Query: 204 ETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
            ++     L+S      S  +          +  +  + +        T L +V+ LK G
Sbjct: 225 SSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELELVATFPDLPTRLTNVMKLKKG 284

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            VIP    E      S  G  +++ + G V   + +++   I  
Sbjct: 285 DVIPLDKPE--LIAASVGGVPVFTAKYGSVNNQFALKVEQMIPS 326


>gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
 gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
          Length = 367

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 8/278 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       M   V++   S     +   + S      F+  S+     N  +  + +
Sbjct: 66  ARNLASQISSVMRSIVELRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPS 125

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           +   +++ LLG + E      NR L+ +E  L    +  I   L +  S   +  PN+E 
Sbjct: 126 IAFPMIDRLLGGTGEN--FEANRELTDIEVNLLDAVLRMIMQRLKESWSMITDMYPNVEA 183

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219
                 + +  +   NE V  + M + +   +    L  P    L+  L  L++++    
Sbjct: 184 KESSPNVVQIVS--QNEIVIMVVMEIIVGGSSGMINLCYPV-IYLEPILSRLANRDIMLG 240

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +  +           +  V  +  +     ++ + + LK G ++         AI+  
Sbjct: 241 ETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRGADDKAIVCI 300

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + KE++  E+G      +I+I   I  D+  +K+ L K
Sbjct: 301 DKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKHILEK 338


>gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
           TA208]
 gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus
           amyloliquefaciens LL3]
          Length = 332

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 10/273 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  K+   + IS +S     +   I S     + +   +        +  + 
Sbjct: 63  FARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +   +L+ ++G    T  +  N  L+ +E  +             +   +  +  P + 
Sbjct: 123 TIAYAMLDRVMGGIGITHNKADN--LTEIETNIISNLFENALGNYKEAWQSIADIDPEMT 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217
           +F      +       NE V  I++N  I  ++    L IP   +L+  +  LS     Q
Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +       +      ++     + +   +   + T+++ ++L++G  I           +
Sbjct: 238 SDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPLTV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309
               K  +  + GRV +   ++I D  I  +Q 
Sbjct: 298 LVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330


>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
 gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
           ISDg]
          Length = 325

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 108/285 (37%), Gaps = 17/285 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I    G L    LP   ++    +V +   + ++  +    ++     +      
Sbjct: 52  RTLDIIFEHYGRLLSTHLPAYLRK----NVQVEVINSEAVVYQEFTNALSNPVLLGIIDF 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    N  I  + N+   +++ +LG S    P   +R  S +E  + +R    ++ +L +
Sbjct: 108 APLEGNIIIELAENVGYAIVDRMLGGSGN--PLEKSRDFSEIELVIIERIFTVMTNILAE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
             +   + +P L          +  +   ++  + + +N+ I N+     + +P   L  
Sbjct: 166 PWANVVKLNPRLIRIETNSQFAQIIS--PSDMASIVTLNIKIGNIEGMMNVCLPYACLEV 223

Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               L T     + Q K ++  ++ I+       +  + +   +     +L +++ ++ G
Sbjct: 224 IIDKLNTKYWYSTMQEKGDSNYQEFIE---TAISRARIPVKAVLGKSSISLNELINMQKG 280

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +I    +      +     + ++   G    +Y ++I+  I  +
Sbjct: 281 DIIKLDRKIDDELSVYVGNIKKFTALPGASSDSYAVKISTIIREE 325


>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 330

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 7/273 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + +      ++   V I   S +   +   + S     +    SL     +  +  
Sbjct: 60  ENYSRSVSTYLSAQLRAAVQIDVLSVEQLTYDEFMRSLPNPTIMCVFSLQPLEGSAIMEI 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + NL   +L+ +LG       ++  R L+ +E  L +R   ++ + L +  S   E  P 
Sbjct: 120 NPNLGFAMLDRILGGPGLPPERI--RPLTEIEITLIERLAQRMLSYLEEPWSGIIELQPV 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL---ISLSS 216
           ++         +  +   +E V  I++   I +V S   + IP   L   T    ++   
Sbjct: 178 MDRIESNPQFTQIVS--PSEMVVIISLESKIGDVLSLINICIPFLVLESITGKLNVNYYY 235

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            +  + +S+D       +     V +   I     T+++++ L  G VIP   R      
Sbjct: 236 SSSVKERSKDSALVLKNRIENAMVPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLE 295

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +    K  +  + G VG    ++IT+ ++    
Sbjct: 296 VVIGQKPKFRGKPGVVGNRLALKITEIVSEVDD 328


>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
 gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
          Length = 331

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +       +L      ++  +V I+  + Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNFARTISNYL----TAQVRTNVKINIETVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S +     +      +++ LLG S     +   R  + ++K + K+    + A L  
Sbjct: 109 PPLSGSILFETNPQFAYQIIDVLLGGSGTGKYKT--REFTDIDKNIIKQINKGLIANLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E  P +E          N     NE V  I  ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNNTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    +  +    E   +   ++   + + +   +     T+   +TL +G VI
Sbjct: 225 VLDKLVVQYWFRENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                  +   +    +       G +GKN  ++I D I+ D +
Sbjct: 285 TLDSLTSSPVKVVVGNEPYLLGRPGTIGKNRGVQILDIIDKDVE 328


>gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
 gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
          Length = 332

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 96/265 (36%), Gaps = 9/265 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   + IS +S     +   I S     + +   +        +  + 
Sbjct: 63  FARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +   +++ ++G    +  ++   SL+ +E K+             +   +  +  P + 
Sbjct: 123 TVAYAMMDRVMGGIGISHNKVD--SLTEIETKIISNLFENALGNYKEAWQSIADIEPEMT 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217
           +F      +       NE V  I++N  I  ++    L IP   +L+  +  LS     Q
Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           ++      +      ++     + +   +   + T+++ ++L++G  I           +
Sbjct: 238 SERNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
               K  +  + GRV +   ++I D
Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQILD 322


>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
 gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
           1873]
          Length = 331

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 105/284 (36%), Gaps = 11/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V I   + Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNFARIISNYL----TAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S +     +      +++ LLG       +   R  + ++K + K+    + A L  
Sbjct: 109 PPLSGSILFETNPQFAYKVIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 +  P +E          N     NE V  I  ++ +   ++   + IP  ++  
Sbjct: 167 AWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    +    +  E   +   ++   + + +   +   K T+ + +TL +G V+
Sbjct: 225 VLDKLVVQYWFRENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +   +   +    K     + G +GKN  ++I D I+ D +
Sbjct: 285 TLDNLTSSPVKMMVGDKPYLLGKPGIIGKNRGVQILDIIDKDVE 328


>gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
 gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 332

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 112/282 (39%), Gaps = 11/282 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E +  +   +   +L      +   +V +   + +   +   IHS +   + +   +
Sbjct: 53  RTLELVHDNYARIISNYL----TGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITVFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + N     +    + +++ LLG + +   ++  +  S ++K + ++    + + L  
Sbjct: 109 PPLAGNIIFETNPQFSLQVIDILLGGNGD--RKVEAKEFSDIDKNIMRQITTGMISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
              +  E  P +E          N     N+ V  I  ++ +   ++   + IP  ++  
Sbjct: 167 AWESILEVEPEVEGIET--NPAINQTLAPNDPVALITFSVEMNKRSTFINMCIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++  S +N  E+   +  +      ++++V++   +     T++D + L +G VI
Sbjct: 225 ILDKLVVQYSFKNDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               R  +   +    +E Y  + G  GKN  + I D  + +
Sbjct: 285 KLDTRSSSPIKVYVGNEECYCAKPGVSGKNMGVMILDITDKE 326


>gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
 gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
           QYMF]
          Length = 331

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 107/287 (37%), Gaps = 13/287 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +   +   FL    +      V     + +   +    +S     V S  + 
Sbjct: 53  RTLQIIHDNFSRMLNTFLAGYLRTY----VQADVLTVEELSYYEFSNSVVNPAVLSIINF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +       +  S ++  TL+E +LG   +   ++  R  + +E  L K+ + Q+  ++  
Sbjct: 109 TPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLMRQVINLMVD 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P L+         +  +   N+ V  + +N+ I +V     + IP   +++
Sbjct: 167 PWENVIELQPKLDKIETNSQFAQIVS--PNDTVALVTLNLKIGDVEGMMNICIPH-IVIE 223

Query: 209 TTLISLSSQNKSENQSEDLID----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS++    N S+ + +       ++  +  VNI  ++     T+KD + L+IG V
Sbjct: 224 PILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVKDFLELQIGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           I   +       +    K  Y    G       +++T       +  
Sbjct: 284 IMLDNPVNKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDEKGDEIY 330


>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
           14580]
 gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
 gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
 gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
          Length = 332

 Score =  139 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 9/265 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  ++   + IS +S     +   I S     + +   +        +  + 
Sbjct: 63  FARLLTTYFSAQLRTYIQISVSSVDQVPYEEFIRSIPNMTILNLFEVRPLEGRIMMEINP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +  T+++ ++G    +  ++   S++ +E K+                 +  E  P + 
Sbjct: 123 TIAYTMMDRVMGGIGSSHNKID--SMTEIETKIMSNLFESCLTNYKDAWESITEIEPEMS 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217
           DF      +       NE V  I++N  I +++    L IP   +L+  +  LS     Q
Sbjct: 181 DFEV--NPQFVQMVSPNETVVVISLNTQIGDISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +       +      ++     + I   +   + T+++ + L+IG  I           +
Sbjct: 238 SDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDCITLDKSVAEPLTV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
               K  +  + GR+ +   I+I D
Sbjct: 298 LVGDKPKFLAQAGRMNRKTAIQILD 322


>gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
           2782]
 gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
           2782]
          Length = 328

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 109/286 (38%), Gaps = 13/286 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
           K+T++ I+ +   L + FL    +      V +   S  + ++S   +S     +     
Sbjct: 52  KRTLQFINENYARLVQSFLSGYLRSL----VQVDVLSVDALQYSEFSNSLANPIILGIVD 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +  + +       ++   L++ +LG    ++ ++  RS + +E  + +R I QI  ++ 
Sbjct: 108 FTPLNGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +     P LE         +  +   NE V  I +N+ +  V     + IP  T+ 
Sbjct: 166 EPWESIIAIKPRLEKIETNAQFAQIIH--PNEMVALITLNVVVGEVKGMINICIPHMTV- 222

Query: 208 KTTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  LS++    N   + I+        K     V +   +     ++ + + L+ G 
Sbjct: 223 EPIMPKLSTKLWFTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+P          +       ++ + G       ++IT+ +  ++ 
Sbjct: 283 VLPLDTNVNGDLEILVGDLPKFNAKPGVKKNKVAVKITEVLRREED 328


>gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
 gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
           2522]
          Length = 332

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 105/277 (37%), Gaps = 7/277 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L      ++   V ++  S     +   I S  +  + +          F I  
Sbjct: 60  ENYARLLTTQLSAQLRTYVQVAVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEV 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + N+   +L+ +LG   E + ++   SL+ +E K+  +   +    L +   +  +  P 
Sbjct: 120 NPNIAYAMLDRMLGGQGEALNKVE--SLTEIETKILSQLFQRSLETLREAWESVVDLDPV 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLISLSS 216
           +++        +  +   NE V  I+++ TI   +    + +P    E++L    I L  
Sbjct: 178 MDEIEVNPQFLQLVS--PNETVVVISLSTTIGEASGMMNICLPHVVIESILPKLSIHLWM 235

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           Q K +++    +    +   Q  +++   +   + ++ + + L    VI          +
Sbjct: 236 QQKKKDRQPGELSALEKNLKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLL 295

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +    +  Y  + G+V     ++ITD I  + +S   
Sbjct: 296 VKLGNEPKYYSQPGKVKGKLAVQITDSIVKEGESDDE 332


>gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
 gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
 gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
 gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
          Length = 358

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI+ I   L       L       M   V+    S     +   + S      F+  S+
Sbjct: 54  RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L +
Sbjct: 110 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +T  E  P++E       + +  +   NE V  + M + I N +    +  P    L+
Sbjct: 168 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 224

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + L  L++++      +  +           +  V  +  +      + + + LK G ++
Sbjct: 225 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 285 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 336


>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 329

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 102/283 (36%), Gaps = 11/283 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  ++   +  FL    +      V +S  S +   +    +S       +    
Sbjct: 53  RTLQMIFENMSRSFTTFLSGYLRTL----VQVSIVSVEQITYYEFSNSLTNPVFIAVIDA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   + C+NN   T+++ +LG    +  +   R  + +E  L  R   Q+  ++  
Sbjct: 109 KPLEGPIILECNNNTTFTIIDKILGGIGAS--ETVQRDYTEIEMGLLTRITTQLLPLIKD 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   E +P +          +  +   NE V    M++ I +        +P  T++ 
Sbjct: 167 AWSNVIELNPEITRIETNSQFTQVIS--PNETVALCTMSLKINDNEGLINFCLPHITIV- 223

Query: 209 TTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
             L  L+++    N  +   D      K     V +   I   K T++D+++   G VI 
Sbjct: 224 PILPLLTTKTWFSNAEKQTYDIGIIKDKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIE 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              R K    +  N +  +    G   K Y ++IT+  +    
Sbjct: 284 INKRYKDPIEVKINDETKFLGVPGIRNKKYCVQITEICSEGDD 326


>gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
 gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
          Length = 333

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 110/280 (39%), Gaps = 13/280 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +   +   FL      ++   V IS  S     +   I S  +  + +   +
Sbjct: 53  RSLTRIHENFSRILTTFLS----AQLRTYVQISVASADQIPYEEFIRSIPKMTLLTVYEV 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + N+  T+++ +LG   E+I ++    L+ +EKK+  R   Q    L +
Sbjct: 109 PPLDGNIIMEINPNIAYTMMDRVLGGYGESINKIDK--LTEIEKKIMTRIFDQTIDQLKE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   E +P L +        +  +   NE V  I++N TI + +    L +PQ  +L 
Sbjct: 167 AWSEIIEINPFLTELEVNPQFLQMIS--PNETVVVISLNTTIGDTSGMINLCLPQ-VVLD 223

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS     Q+  +    + I        +  V +   +      ++D + L+IG  
Sbjct: 224 PMMPKLSGHYWMQHAGKEPDPNNIRLLEEGIKEAKVPLTAELGTATIKIEDFLNLEIGDC 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           I      +   ++  +    +  + G+ G    ++I D I
Sbjct: 284 IRLNQTIEEPLVVKVDKIPKFIGQPGKQGTKMAVQILDII 323


>gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
           AK-01]
          Length = 325

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 9/284 (3%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           G   T+E ++  L  ++   L    +       DIS       KFS    S         
Sbjct: 49  GRMPTLEVVNKRLARMFSSSLSATMRGA----ADISVRDTNMIKFSEFQSSIPVPANIHM 104

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
             +     +  +     LV  L+E   G +     ++  R  + +E ++ ++ +      
Sbjct: 105 FKMEPLRGHALLVVDTPLVFQLIEYYFGGTPGGALKVEGRDFTRIENQIIRKVVGIFLKD 164

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
            +   +      P      +++          +  +  +   + +E       L IP   
Sbjct: 165 FDDAWAPIFPIKPVYVR-SEMNPQFAVIGLPIDLMII-VRFQVELETTEGGMTLAIPYS- 221

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQ 263
           +L+     L S  +S+N   D       ++    V ++  + L     T + +++L+ G 
Sbjct: 222 MLEPIRDKLYSGFQSDNLEADASWRKRVESQVQEVLVEICVELGTAVITAERLMSLRKGD 281

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           VI               G    + + G V  +  I +  RI  D
Sbjct: 282 VISLDQFADEPLTAKIQGVPKIAGKAGVVKGSKAIAVEGRITMD 325


>gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
 gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
          Length = 333

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 97/277 (35%), Gaps = 10/277 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + + L       +   +DI   S +   +   + S     V    +L     N  I
Sbjct: 59  LHESFSRLLNTYLSASLRAMIDIEVMSVEQMTYQEFVQSMGNPSVIGIIALPPLKGNIII 118

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
               ++    ++ + G   +  P + +R+L+ +E  + +R I  +     +  S   E  
Sbjct: 119 EVGTDIAFAYIDRIFGGEGK--PGVKSRALTDIEAAVMRRFIDTVINYFREAWSNVIEFR 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215
           PN E         +      ++ V  I +++ + +V     + IP   +L+  +  L+  
Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLITIHVKMGDVEGMMNVCIPY-LVLEPVMSKLTTS 233

Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              + +  +  + + +    RK  +  V     +     T+ + +TL  G V+      +
Sbjct: 234 FWVASSVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGDVLQLDTLAQ 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +        +    G  GK   ++I+  I  D  
Sbjct: 294 DELVCYVGTNPKFRAHPGTAGKRMAVQISGIIEGDDD 330


>gi|116328061|ref|YP_797781.1| flagellar motor switch protein FliM [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331486|ref|YP_801204.1| flagellar motor switch protein FliM [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116120805|gb|ABJ78848.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125175|gb|ABJ76446.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 341

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 108/292 (36%), Gaps = 17/292 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ +  +   L    L      ++   V +   S     +   I S       +  ++
Sbjct: 53  RTLQMMHETFARLATTGLS----AQLRALVSVHVASVDQLTYEEFIRSIPNPTTLAVINM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +    ++  T+++ L G   E      +R LS +E  + +  I +I   + +
Sbjct: 109 DPLRGSAILEIDPSISFTIIDRLFGGKGE--QAKISRELSEIEMSVMEGIIVRILGNMRE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  +  P L +        +      N+ V  I +   I  V     L IP  T ++
Sbjct: 167 SWSTVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKIGEVEGMTNLCIPYIT-IE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+Q    +  +  +D        +  Q+ + +   +     ++ D + L +G V
Sbjct: 224 PIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIPLIAEVGSVDVSINDFMNLSVGDV 283

Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +   +   ++  I+    ++ + C  GRVG    I+I DR+   +      L
Sbjct: 284 VKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQIGDRV---EDIPDELL 332


>gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 359

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI+ I   L       L       M   V+    S     +   + S      F+  S+
Sbjct: 55  RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L +
Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +T  E  P++E       + +  +   NE V  + M + I N +    +  P    L+
Sbjct: 169 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 225

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + L  L++++      +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337


>gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
 gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
 gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 359

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI+ I   L       L       M   V+    S     +   + S      F+  S+
Sbjct: 55  RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L +
Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +T  E  P++E       + +  +   NE V  + M + I N +    +  P    L+
Sbjct: 169 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 225

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + L  L++++      +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337


>gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 334

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 10/277 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + + L       +   V+I   S +   +   + S     V    +L     N  I
Sbjct: 59  LHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPAVIGIIALPPLKGNIII 118

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
               ++    ++ + G   +  P + +R+L+ +E  + +R I  +     +  S   E  
Sbjct: 119 EVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFREAWSNVVEFR 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215
           PN E         +      ++ V  + ++M + +V     + IP   +L+  +  L+  
Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLVTIHMKLGDVEGMMNICIPY-LVLEPVMSKLTTS 233

Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              + +     S D +    RK  +  V     +     T+ + +TL  G V+      K
Sbjct: 234 FWVAASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAK 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +        +    G  GK   ++I+  I  D+ 
Sbjct: 294 DELVCYVGTNAKFRAYPGTAGKRMAVQISGIIEGDED 330


>gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           414]
          Length = 359

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI+ I   L       L       M   V+    S     +   + S      F+  S+
Sbjct: 55  RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L +
Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +T  E  P++E       + +  +   NE V  + M + I N +    +  P    L+
Sbjct: 169 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 225

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + L  L++++      +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    AI+S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337


>gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
           5692]
 gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
           5692]
          Length = 336

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 81/260 (31%), Gaps = 4/260 (1%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
               ++   V +   + ++  F + +   +E  +    S     S   +     L   LL
Sbjct: 71  SMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLLIFDCPLSFCLL 130

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           E + G + E    + +R L+++E  + K  +               E   NL        
Sbjct: 131 EVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELKTNLVQAEINPR 190

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL--KTTLISLSSQNKSENQSED 226
           L    +      V     ++   N+     L+IP   +   K  L +      + +  + 
Sbjct: 191 LVSIVS--PETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRMFDVITVSGGQA 248

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                  +  ++   +  +      T+++++ LK G +I      +    +    K  + 
Sbjct: 249 WTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRVLVEQKPKFQ 308

Query: 287 CELGRVGKNYTIRITDRINF 306
              G       +RIT     
Sbjct: 309 AVAGTRKGKKAVRITGTTGQ 328


>gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
           H10]
 gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
           H10]
          Length = 328

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 108/286 (37%), Gaps = 13/286 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
           K+T++ I+ +   L + FL    +      V +   S  + ++S   +S     +     
Sbjct: 52  KRTLQFINENYARLVQSFLSGYLRSL----VQVDVLSVDALQYSEFSNSLANPVILGIVD 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
            +  + +       ++   L++ +LG    ++ ++  RS + +E  + +R I QI  ++ 
Sbjct: 108 FTPLNGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +   +     P LE         +  +   NE V  I +N+ +  V     + IP  T+ 
Sbjct: 166 EPWESIIAIKPRLEKIETNAQFAQIIH--PNEMVALITLNVVVGEVKGLINICIPHITV- 222

Query: 208 KTTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  LS++    N   + ++        K     V +   +     ++ + + L+ G 
Sbjct: 223 EPIMPKLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+P          +       +  + G       I+IT+ +  ++ 
Sbjct: 283 VLPLDTNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREED 328


>gi|78357750|ref|YP_389199.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220155|gb|ABB39504.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 326

 Score =  137 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   V+++  S    KF   + S       +   +     N  I   
Sbjct: 60  RFARLCTNALSNAVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN  G +  + P++  R  + +E+ +  R I      + +      E +  L
Sbjct: 120 SRLVFALVENFFGGAG-SQPKIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHEVNLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I   + +E+   S V+ +P  T ++     L +  ++
Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELESAIGSLVMCLPYAT-IEPIRSKLHASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +     +  +  V +  R    K T   ++ LK+G V+            +
Sbjct: 236 ERLEVDHAWVARLKERLLETPVEMKIRFGETKITGNQLLRLKVGDVLLLDTDTDDLLEGT 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   +    G V  N   ++
Sbjct: 296 VEGVRKFWGISGIVKANKAFQV 317


>gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
           HTCC2516]
 gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
           HTCC2516]
          Length = 316

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 88/277 (31%), Gaps = 8/277 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            Y   L    K    +  D++  S         +       + +  + + WS N  +  S
Sbjct: 39  RYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSGLPAPSLSALTTATPWSGNVLMTLS 98

Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            +L+ ++LE +LG            RS + +E++   R    I    +Q      E S  
Sbjct: 99  PDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFGGRLARMILDEFSQSFRQLSEVSFE 158

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217
           ++        +      S      + +++T+     +   +IP   L  ++  L      
Sbjct: 159 IDSLES--APETIAIAPSGSPAVWVTLDLTVGERGGALYFLIPYTALDTVRPVLNQPFLG 216

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
            K              K     V +   ++  +  +++ +  + GQ I      +    +
Sbjct: 217 GKIGG-DTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDLGISAEQPVDV 275

Query: 278 SANGKEIYSCELG-RVGKNYTIR-ITDRINFDQKSLK 312
               + ++  ++G R      +R I +    +     
Sbjct: 276 VCGERRMFRGQMGRRATGQVALRLIEEDTGTEADDAD 312


>gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 363

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 105/278 (37%), Gaps = 8/278 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       M   V+I   S     +   + S      F+  S+     N  +  + +
Sbjct: 65  ARNLASQISSIMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 124

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           +   +++ LLG + +      NR L+ +E  L    +  +   L +  S   +  PN+E 
Sbjct: 125 IAFPMIDRLLGGNGDGFES--NRELTDIEINLLDAILRIMMQRLKESWSMITDMYPNVEA 182

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219
                 + +  +   NE V  + M + I N +    +  P    L+  L  L++++    
Sbjct: 183 KESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMINICYPV-IYLEPILSRLANRDIMLG 239

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +  +           +  V  +  +     ++ + + L+ G ++         AI+  
Sbjct: 240 ETSAKKSRNKELKTLIGRAEVLYEAILGRTVISVNEFLNLQEGDILRLDKSADDKAIVCI 299

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + K+++  ++G      +I+I + I  D+  +KN L +
Sbjct: 300 DKKDVFLAQIGLHRFRKSIKIEELIKTDKDEIKNILEQ 337


>gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 334

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 100/281 (35%), Gaps = 13/281 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           + I+ I  S        L  + +      V     S     +   + S  +  V     +
Sbjct: 54  RAIQMIHESFSRQLTTSLSTMVRSI----VTCEVASVDQVAYEEFVRSMVQPTVMGVLEM 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + NLV  +++ LLG   E   +   R L+ +E  + +R   ++  +L  
Sbjct: 110 YPLEGNAVVEMNPNLVFAIIDRLLGGKGEVFGKP--RDLTDIESTVIERVFMRMLELLED 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  +     +      +  +       + V  + + ++I +V     L IP   + +
Sbjct: 168 SWSTVIDVRFRFDSMESNPFFVQIC--PGTDMVLLVTLRVSIGDVEGMVSLCIPYFVM-E 224

Query: 209 TTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LSSQ    +  +N+ +D           + V +   +     +L DV+ L++G V
Sbjct: 225 PVMDKLSSQIWFASTGKNKDQDHRGFLTASLGTVKVPVHLELGDTVLSLFDVMRLRVGDV 284

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I           +    +  ++   G V   Y++ + +  +
Sbjct: 285 IRLDSMLDDPVRVRVGSRIKFTGRPGTVDGRYSVEVLEVAD 325


>gi|300024614|ref|YP_003757225.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526435|gb|ADJ24904.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 322

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 96/283 (33%), Gaps = 17/283 (6%)

Query: 46  LPKIFKEKMDL----DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           LP++  E++       V        +       +    N          W +  +     
Sbjct: 40  LPRVMVEELGSVSSFPVKARLLDLSASTIGESCN-LPPNTYAGVVRAERWRNWLYFISDP 98

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            L    +E+ LG        L  R L+  +  + +    +++  L+   S   +   +L 
Sbjct: 99  TLTALFVESALGCEGLPPTGLTERRLTKTDANILRVMFRRVTRALSHAFSILVDVQLDLG 158

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL--------IS 213
           D    D ++      ++  V +  + +          ++IPQ  +              +
Sbjct: 159 DVV--DKIELEPQLSTSSPVISARLAIEYFGQTGILTIVIPQAAIEPVRDLLAVASAGEA 216

Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           + +   S    +D       + +  +  + ++  +  +  +L +V    +G V+      
Sbjct: 217 VGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILEERPISLGEVQRFAVGSVVELTSTS 276

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                L A+   ++ CELG+     T+RI D  + +++++  F
Sbjct: 277 LARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQNKETIDEF 319


>gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 353

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 102/274 (37%), Gaps = 8/274 (2%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
             + L       M   V+I   S     +   + S      F+  S+     N  I  + 
Sbjct: 62  MARNLASQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCIIEINP 121

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           ++   +++ LLG   E+      R L+ +E  L    +  I   L +  +   +  P +E
Sbjct: 122 SIAFPMIDRLLGGLGESYE--ATRELTDIELNLLDAILRIIMQRLKEGWAPITDMYPAIE 179

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN--- 218
                  + +  +   NE V  + M + I N +    L  P    L+  L  L++++   
Sbjct: 180 TKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMINLCYPV-IYLEPILSRLANRDIML 236

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
              +  +           +  V  +  I   + ++ +++ LK G ++         AI+ 
Sbjct: 237 GETSAKKSRNKELNTLISRAEVFNEAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVM 296

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            + KE++  E+G    + +I+I   +  D+  +K
Sbjct: 297 IDKKELFLAEIGLHRFHKSIKIERLVKTDKDEVK 330


>gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
           FZB42]
 gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42]
          Length = 332

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 10/273 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L   F  K+   + IS +S     +   I S     + +   +        +  + 
Sbjct: 63  FARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            +   +L+ ++G    T  +    SL+ +E  +             +   +  +  P + 
Sbjct: 123 TIAYAMLDRVMGGIGITHNKAD--SLTEIETNIISNLFENALGNYKEAWQSIADIDPEMT 180

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217
           +F      +       NE V  I++N  I  ++    L IP   +L+  +  LS     Q
Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +       +      ++     + +   +   + T+++ ++L++G  I           +
Sbjct: 238 SDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPLTV 297

Query: 278 SANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309
               K  +  + GRV +   ++I D  I  +Q 
Sbjct: 298 LVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330


>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
 gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
           YK9]
          Length = 333

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 109/311 (35%), Gaps = 17/311 (5%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
           ++ +   K           R      D  +++ +I  +       +L   F  ++   V 
Sbjct: 27  LKKEDTQKKVRAYD---FKRAVRFSKDHIRSLTRIHENFAR----YLTTYFSAQLRTFVQ 79

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           IS    +   +   I S  +  + +            +    N+   +L+ LLG      
Sbjct: 80  ISVVDVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDRLLGGQGTAP 139

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++   +L+ +E  + +R  ++    L +   T  + SP LE         +  +   NE
Sbjct: 140 SKMN--ALTEIEMTVLERIFSRAFESLQEAWKTVIDISPKLEALETNPQFMQIVS--PNE 195

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKT 235
            +  I+++  I +      L IP   +++  +  LS      ++ +++S + ++   ++ 
Sbjct: 196 TIALISLSTKIGDTTGMINLCIPH-VVIEPIMPKLSVHHWFVSQKKSRSPEEVEVLEQRV 254

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +  + I   +      + + + L  G VI           +    K  +    G +   
Sbjct: 255 NRAQLPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIGSPGSIKDR 314

Query: 296 YTIRITDRINF 306
             +++ + ++ 
Sbjct: 315 VAVQVDEIVSE 325


>gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
 gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
          Length = 334

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 10/277 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + + L       +   V+I   S +   +   + S     V    +L     N  I
Sbjct: 59  LHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPSVIGIIALPPLKGNIII 118

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
               ++    ++ + G   +  P + +R+L+ +E  + +R I  +     +  S   E  
Sbjct: 119 EVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFREAWSNVVEFR 176

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215
           PN E         +      ++ V  + ++M + +V     + IP   +L+  +  L+  
Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLVTIHMKLGDVEGMMNICIPY-LVLEPVMSKLTTS 233

Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              + +     S D +    RK  +  V     +     T+ + +TL  G V+      K
Sbjct: 234 FWVASSVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAK 293

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +        +    G  GK   ++I+  I  D+ 
Sbjct: 294 DELVCYVGTNAKFRAHPGTAGKRMAVQISGIIEGDED 330


>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
 gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
          Length = 367

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 106/278 (38%), Gaps = 8/278 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       M   V+I   S     +   + S      F+  S+     N  +  + +
Sbjct: 64  ARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 123

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           +   +++ LLG + E      +R L+ +E  L    +  +   L +  S   +  PN+E 
Sbjct: 124 IAFPMIDRLLGGNGE--GFEASRELTDIEVNLLDAILRMMMQRLKESWSMITDMYPNVEA 181

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219
                 + +  +   NE V  + M + + N +    +  P    L+  L  L++++    
Sbjct: 182 KESSPNVVQIVS--QNEIVIMVVMEIIVGNSSGMINICYPV-IYLEPILSRLANRDIMLG 238

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +  +           +  V  +  +     ++ + + LK G ++         AI++ 
Sbjct: 239 ETSAKKSRNKELKTLIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTI 298

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + KE++  E+G      +IRI + I  D+  +KN L +
Sbjct: 299 DKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 336


>gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
 gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
          Length = 333

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 105/274 (38%), Gaps = 9/274 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L  +F  ++   V +S  S     +   I S  +  + +  ++     +  +  
Sbjct: 61  ENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIAVPPLEGHIIMEV 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + N+   +L+ LLG   E+  ++ N  L+ +E  L +  + +    + +  S+  E  P 
Sbjct: 121 NPNIAYAMLDRLLGGQGESGEEISN--LTEIETSLVRNLLEKTLDSMREAWSSIAEIEPE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +F       +  +   NE V  I++N+ I +      L IP  T L+  +  LS    
Sbjct: 179 TSEFEVNPQFLQVIS--PNEIVIVISLNVQIGDETGMINLCIPHVT-LEPIVSKLSVHYW 235

Query: 220 SENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            ++  ++     ++    +     + +   +     +++D + L  G VI          
Sbjct: 236 MQSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDVIRLQTSVHNPL 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +    +  +  + G+V +   ++I D +    +
Sbjct: 296 TIYVGEQPKFIAQPGKVSRKVAVQILDDVKRRNE 329


>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
 gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
           Ice1]
          Length = 331

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 9/278 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L       +   V IS  S     +   I S     + +  ++S  + N  +  
Sbjct: 59  ENYCRSLTTYLAANLRTLVQISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             N+   +++ L G +     ++  R L+ +E+ + +RT  ++     +      +    
Sbjct: 119 HPNIAFAVIDRLFGGTGNPPDKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKAR 176

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-- 217
           LE         +       E V  I +   I +V     + +P   LL+  +  LS+   
Sbjct: 177 LEMIETNPQFIQIV--APTEMVVVITLACKIGDVEGMINICLPY-ILLEPIISKLSAHFW 233

Query: 218 --NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             N ++ ++ + ++    +  +  V I   +     ++ +++ L++G VI   +R  +  
Sbjct: 234 FSNAAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSEL 293

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
            +    +  Y    G  G    I+IT       ++   
Sbjct: 294 EVLIGQRVKYLARPGLSGSKLGIQITATYEKGVETDDE 331


>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
 gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
          Length = 334

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 105/282 (37%), Gaps = 13/282 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T+E I  +   +    L    + +    VD    S +   +   I S  E  +   + 
Sbjct: 52  MRTLEMIHENFARILTTTLSTQLRSR----VDFEVASIEQLTYEEFIRSLPEPTIIGISE 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +  ++  F    + ++   +++ L G      P    R+ + +EK + ++ I+   + L 
Sbjct: 108 MEPFNGQFIFEINPDIGFAIIDRLFGGMGN--PLDRVRTYTDIEKVVLRKVISWFLSGLP 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +         P L +        +     SN+    I M+  I N      + IP   ++
Sbjct: 166 EAWENIIRVKPRLREIESNPQFTQVV--PSNDMTILITMSAKIANSEGLVNVCIPY-IMI 222

Query: 208 KTTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  L++Q    N  E+      +   +K  +  + +   +   + T+ D++ L+ G 
Sbjct: 223 EPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           VI    + +    +       +    G   K+  ++ITD I+
Sbjct: 283 VIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324


>gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
           684]
 gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
           684]
          Length = 329

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 98/267 (36%), Gaps = 3/267 (1%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L      ++   V +   S  S ++  +IH    + ++   SL     N  +   +
Sbjct: 66  FARNLSFSLSNRLQRAVSVLRESISSMEYETLIHECSNHELYGILSLDPLKKNGLLIFDS 125

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           ++    +E +LG   E    L  R ++T+E  + K  I +    LN+  S  +    +L 
Sbjct: 126 SISFAQVEIMLGGVAEHSGDLPQRGMTTIETNILKEVIRESCLELNKAFSPIEGLESDLV 185

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                  L       +   V      + I  ++    L+IP  + L      L S+  + 
Sbjct: 186 RVESNPRLVTIVPADTEMMVAA--FRVKINEISGLLRLVIPYSS-LDPIREKLKSELGAS 242

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                     A +   ++V +  ++      +++++ L++G ++           +   G
Sbjct: 243 GPGGQWRSHLAHEVEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEG 302

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQ 308
           K  +S   G       +R+ +R++  +
Sbjct: 303 KGKFSGLAGLRDGKKAVRVLERLHRRR 329


>gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
 gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
          Length = 331

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 95/260 (36%), Gaps = 6/260 (2%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
               ++   V+I     +S KF   + +       +   L        I   ++L   ++
Sbjct: 67  TLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALIAMDSSLAFAIV 126

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           +++LG +  T   L NR  +T+E +L +  +A + A L +  +    +  +L        
Sbjct: 127 DSVLGGTSRTALAL-NRLFTTLELRLVEMVLADVLADLEKSWAPLYPAKLSLLRMEMNPR 185

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSED 226
           L           V T+ + + IE    + + ++P  T ++     L    + +       
Sbjct: 186 LVTIV--PPEYQVVTMTVKVHIEENVGTMIFVVPIMT-IEPIRDKLKEGMQFDLMAIDPQ 242

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                + +     + +   +     +L++++ L++G  I       +  ++   G   Y 
Sbjct: 243 WSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELLVKVEGVPKYQ 302

Query: 287 CELGRVGKNYTIRITDRINF 306
              G    N  ++I+D I+ 
Sbjct: 303 GIPGIRHGNKAMQISDIIST 322


>gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
           5501]
 gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
           5501]
          Length = 333

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 100/278 (35%), Gaps = 9/278 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L      ++   + +   S +   +   I S  +  + S    +  +  F +  
Sbjct: 61  ENFARLLNTSLSTQLRTMIHVELNSIEQLSYDEFIRSLPQPTIMSICDFNPLAGEFILEI 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +  L   ++E L G        +  R  + +E+ + K+ + Q  +   +      +  P 
Sbjct: 121 NPRLGYAIVERLFGGQGTPPNNI--RDFTDIEEMVLKKVLKQNLSAFVEAWENVIDLKPR 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           +++        +      N+ V     +  I        + IP   +L+  +  L++Q  
Sbjct: 179 IKNLESNPQFTQIV--PGNDMVILATFDAKIAEAEGLINVCIPY-IVLEPIVSKLNAQYW 235

Query: 220 S----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
                ++ S + ++    +  +  + +   +     T+ D++ L+ G VI    +    A
Sbjct: 236 FSTSRDSASSEELNKLKDRLSKAKLPVIANLGTTNITVADLLDLQPGDVIRMDQKATKEA 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           ++    KE +  + G VG    I I+  ++ ++     
Sbjct: 296 VVKVGNKEKFIGKPGVVGSKLAIEISSVLDKEEAVEDE 333


>gi|24214781|ref|NP_712262.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657699|ref|YP_001785.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24195784|gb|AAN49280.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600939|gb|AAS70422.1| FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 341

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 108/292 (36%), Gaps = 17/292 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ +  +   L    L      ++   V +   S     +   I S       +  ++
Sbjct: 53  RTLQMMHETFARLATTGLS----AQLRALVSVHVASVDQLTYEEFIRSIPNPTTLAVINM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +    ++  T+++ L G   E      +R LS +E  + +  I +I   + +
Sbjct: 109 DPLRGSAILEIDPSISFTIIDRLFGGKGE--QAKISRELSEIEMSVMEGIIVRILGNMRE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  +  P L +        +      N+ V  I +   I  V     L IP  T ++
Sbjct: 167 SWSTVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKIGEVEGMTNLCIPYIT-IE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+Q    +  +  +D        +  Q+ + +   +     ++ D + L IG V
Sbjct: 224 PIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIPLIAEVGSVDVSINDFMNLSIGDV 283

Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           +   +   ++  I+    ++ + C  GRVG    I+I +R+   +      L
Sbjct: 284 VKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQIGERV---EDIPDELL 332


>gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
 gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
          Length = 328

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 105/269 (39%), Gaps = 9/269 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L  +F  ++   V +S  S     +   I S  +  + +  ++     +  +  
Sbjct: 61  ENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIAVPPLEGHIIMEV 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + N+   +L+ LLG   E+  ++ N  L+ +E  L +  + +    + +  S+  E  P 
Sbjct: 121 NPNIAYAMLDRLLGGQGESGGEISN--LTEIETSLVRNLLEKTLDSMREAWSSIAEIEPE 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +F       +  +   NE V  I++N+ I +      L IP  T L+  +  LS    
Sbjct: 179 TSEFEVNPQFLQVIS--PNEIVIVISLNVQIGDETGMINLCIPHVT-LEPIVSKLSVHYW 235

Query: 220 SENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            ++  ++     ++    +     + +   +     +++D + L  G VI          
Sbjct: 236 MQSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDVIRLQTSVHNPL 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +    +  +  + G+V + + ++I D +
Sbjct: 296 TIYVGEQPKFIAQPGKVSRKFAVQILDDV 324


>gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
 gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
          Length = 359

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 107/276 (38%), Gaps = 9/276 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  S       +L      +    VD+ Y S     FS    S          S 
Sbjct: 56  RTLQLIHESFARELSTYLS----GRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFSS 111

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            ++S +  +    +L   +++ LLG    T+ ++  R  + +E  + ++  A +  +L++
Sbjct: 112 EAFSGSAILQMGLDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLSK 169

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  +E   NLE+       +       NE    I +++TI+NV     L  P  +L  
Sbjct: 170 SWSNIEEFDANLENLET--NPQFVQVAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLEP 227

Query: 209 TTL-ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
               ++      S   +E+  +   +      +N+   +   +  L D + L++G VI  
Sbjct: 228 LNDKLTTRMWTTSYRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIRL 287

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                    L    + I+   +G+    Y+++I ++
Sbjct: 288 DSFYDEPIDLEIEERPIFKVNVGKSKGFYSVKIVEK 323


>gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
 gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
          Length = 328

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 93/255 (36%), Gaps = 7/255 (2%)

Query: 50  FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
              ++   V+I     +  KF   + S       +   +        I   +  V T+++
Sbjct: 68  MSNRLGKMVEIKKVGARPYKFDDFLQSLPSPVCMAIYKIEPLKGAALIAVDSTFVYTVVD 127

Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
           ++LG          NR  + +E +L ++ I  + A + +  +       NL     ++  
Sbjct: 128 SILGGVGVPNIPANNRLFTPIELRLVEKIIRDVLADMEKAWAPLLAVKMNLLR---MEMN 184

Query: 170 KKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSED 226
            +  N +  E+ V T+++ + IE    S +L +P  T+       L S  + +       
Sbjct: 185 PRLVNIVPPEYQVVTMSLKIQIEETVGSMILAVPYMTV-DPIRDKLKSGLQVDMMAVDPQ 243

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                + +  +  + I   +     TL +++ L  G  +      +   ++   G + + 
Sbjct: 244 WSIRLSEELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELLVKVGGVKKFM 303

Query: 287 CELGRVGKNYTIRIT 301
              G  G N  ++I+
Sbjct: 304 GLPGVRGGNKAVQIS 318


>gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
           ATCC 49242]
 gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
           ATCC 49242]
          Length = 314

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 99/272 (36%), Gaps = 5/272 (1%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
             +  +E  ++ V +S     + +   +    +          +  S+ F +   +    
Sbjct: 44  FTRALEEFTNIPVALSLEDLDAKRVGDLQEHCEGLSSILVYDANGLSAKFAVAVDSGFRD 103

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
             +E LLG+         +R+ S VE +L    + ++   L   ++   E     +    
Sbjct: 104 MAVEMLLGSGVVERSDKTDRAASRVEARLVNFAVNRLLNRLAAALAPVAEVQFEQDMLAS 163

Query: 166 IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
                    R +          +          +++P+   L     +LS    +E  + 
Sbjct: 164 EAGYGAVGQRGA--VAIACRFRLKSLEHEGLVAIVLPRAA-LDPYRTALSRFPGAEGVAR 220

Query: 226 D--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           D    +       +  V ++ +I  +  TL+D+  L++G V+       +   + + G+ 
Sbjct: 221 DERWSENLYDNIVRTEVAVNVKIEARGFTLEDIANLEVGDVLGLPIAPTSPIRIESEGRT 280

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
           ++ C LG+   +YT+R+ D  +  Q  ++N L
Sbjct: 281 LFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312


>gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 332

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 103/286 (36%), Gaps = 15/286 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           KT+  I  +   +   +L    +       +I  +S +   +    +S     + +  + 
Sbjct: 53  KTLSIIHDNYARVLSTYLSGYLRVIT----EIEVSSVEELSYYEFNNSISNPAMIAVVNF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  S+ L  T+++ +LG          NR  S +E  +  + +  I    ++
Sbjct: 109 EPLPGQIILETSSKLAYTMIDRILGGDGLYDE--ENRDFSEIELIILSKLVRNIVGYFSE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E SP LE         +  +   NE V  I +++ I  V     + +P   +L+
Sbjct: 167 AWENVIELSPYLEKIEPNSQFAQIVS--PNETVALITLSVKIGEVEGLMNICLP-NIVLE 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNV---NIDTRINLKK--TTLKDVVTLKIGQ 263
             + +LS+        ++  D   +K  + NV    ++    +     T++D + +++G 
Sbjct: 224 PIIQNLSTNFLFSGIKKEF-DEKGKKNLESNVKKAKLEAVAIIGDTFITVEDFIFMQVGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           VI    +      L   GK  Y    G   KN   +I   I    +
Sbjct: 283 VIKLNKKVDEELELKVAGKTKYLGYPGTYKKNMAFKINKVIEKGDE 328


>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
           2228]
          Length = 335

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 13/277 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T++ I  +L  L+   L    +      V+    S +   +S  IHS  E  +   + 
Sbjct: 52  MRTLQMIHENLSRLFTTTLSTKLRSM----VNFEVASIEQLSYSEFIHSLPEPTIIGISK 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L      F    +  +   +++ L G      P    RS + +E+ + KR +  +    +
Sbjct: 108 LEPLEGQFIFEINPEVGFAVIDRLFGGLGN--PIDDIRSFTDIEQVVIKRVMNWLLGDFS 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +      +  P L +        +      ++    I ++  I        + +P   +L
Sbjct: 166 EAWENISKLKPKLLELESNPQFTQIVPD--SDMTIIITLSARIGGSEGLMNICLPY-IML 222

Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  + +L++Q       E Q+ + I    ++  +  V +D  +   + T++D + L+ G 
Sbjct: 223 EPIVSNLNAQYWFSSTREKQTPEHIAKLRKRLNEALVEVDAVLGSTEITVEDFLYLQPGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           V+    + +  A L       Y   +G    +  I+I
Sbjct: 283 VVRLDKKVEENAELKIGRSRKYEAVVGNKNNHKAIQI 319


>gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
 gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
          Length = 325

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 8/244 (3%)

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +         +   +        I     LV T+++++LG S    PQ  NR  +
Sbjct: 86  KFGDFLSVLPNPVCMAIYKMDPLKGAALIAFDATLVFTIVDSILGGSG-VQPQGMNRLFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMN 187
           ++E +L ++ +    A L +  +    +S NL     ++   +  N +  E+ V T++M 
Sbjct: 145 SIELRLVEKIVKDALADLEKAWAPLCPASMNLLR---LEMNPRLVNIVPPEYQVVTMSMK 201

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245
           + IE    S +L IP  T ++     L    + +  + D       + +     +++   
Sbjct: 202 IQIEETVGSMILAIPFLT-IEPIRDKLKRGVQMDMMAVDPFWSYRLSEELMGAPMDLSVE 260

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L D++ L  G  I      K    +   G + +    G  G N  ++IT  +N
Sbjct: 261 MGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALN 320

Query: 306 FDQK 309
              +
Sbjct: 321 AGGE 324


>gi|296103632|ref|YP_003613778.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058091|gb|ADF62829.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 330

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 98/286 (34%), Gaps = 11/286 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83
           ++ I +   SL  +  +   + F+  +        DI+  + +   +     +       
Sbjct: 43  RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 101

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +   L+       +  S  LV   ++NL G       +   R  +  E+++  R ++   
Sbjct: 102 NLLHLNPLRGTSLMAFSPGLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLSMAR 161

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                  S+  +         +I     N     N+ V T   ++ I +    F + IP 
Sbjct: 162 EAYEFAWSSIYKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSVEIGSHRGEFNICIPF 220

Query: 204 ETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            T ++     LS+     ++ ED       A +  +  + +  R     T L  V+ +K 
Sbjct: 221 ST-IEPLRELLSNPPMDNSRHEDSHWRGLLASQMRETELELTARFADIGTRLSRVMQMKK 279

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G +I    +E      S  G  +++   G V   Y +++   I   
Sbjct: 280 GDIIALDKQE--FIEASVGGVPVFTARYGAVNNQYALKVEQMIQPS 323


>gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
           8052]
 gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
           8052]
          Length = 332

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 110/282 (39%), Gaps = 11/282 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      +   +V +   + +   +   IHS +   + +   +
Sbjct: 53  RTLELIHDNYARIISNYL----TGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +  S       +    + +++ LLG   +   +   +  + ++K + ++    + + L  
Sbjct: 109 APLSGTIIFETNPQFSLQVIDVLLGGKGD--RKAQAKEFTDIDKNIMRQVTTGMISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--- 205
              +  E  P +E          N     N+ V  I  ++ +   ++   + +P  +   
Sbjct: 167 AWDSVLEVEPEVETIET--NPAINQTLSPNDPVALITFSVEMNKRSTFINMCLPYLSVEK 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           +L   ++  + +N +E    +  +   +   +++V I   +     T+ D + L +G VI
Sbjct: 225 ILDKLVVQYAFKNDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              ++  +   +    +E Y  + G VGKN  + I D  + +
Sbjct: 285 KLDNKSSSPIKVYVGNEECYYAKPGVVGKNAGVMILDITDKE 326


>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
 gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
          Length = 368

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 106/278 (38%), Gaps = 8/278 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       M   V+I   S     +   + S      F+  S+     N  +  + +
Sbjct: 65  ARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 124

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           +   +++ LLG + E      +R L+ +E  L    +  +   L +  S   +  PN+E 
Sbjct: 125 IAFPMIDRLLGGNGE--GFETSRELTDIEVNLLDAILRMMMQRLKESWSMITDMYPNVEA 182

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219
                 + +  +   NE V  + M + + N +    +  P    L+  L  L++++    
Sbjct: 183 KESSPNVVQIVS--QNEIVIMVVMEIIVGNSSGMINICYPV-IYLEPILSRLANRDIMLG 239

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +  +           +  V  +  +     ++ + + LK G ++         AI++ 
Sbjct: 240 ETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTI 299

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + KE++  E+G      +IRI + I  D+  +KN L +
Sbjct: 300 DKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 337


>gi|295097219|emb|CBK86309.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 330

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 104/286 (36%), Gaps = 12/286 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83
           ++ I +   SL  +  +   + F+  +        DI+  + +   +     +       
Sbjct: 43  RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSSDITAGNIKIQPYHEFARNLPVPTNL 101

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +   L+       +  S+ LV   ++NL G       +   R  +  E+++  R +    
Sbjct: 102 NLLHLNPLRGTALMAFSSGLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAR 161

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                   +  +         +I     N     N+ V T   ++ I +    F + IP 
Sbjct: 162 EAYEFAWGSIYKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSVEIGSHRGEFNICIPF 220

Query: 204 ETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
            T+  L+  L +    N S ++  +     A +  +  + +  +     T L +V+ +K 
Sbjct: 221 STIEPLRELLSNPPMDN-SRHEDSEWRSMLASQMRETELELVAQFADINTRLSNVMKMKK 279

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           G +IP   +E   A +      +++ + G V   Y +++ DR+N  
Sbjct: 280 GDIIPLDKQEFIEANV--GSVPVFTAKYGSVNNQYALKV-DRMNQP 322


>gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
           35580]
 gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
           35580]
          Length = 344

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 14/282 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T+  +  +   L    L    +    + V     S     +   I S       +  +
Sbjct: 52  MRTVSIMHETFARLTTTALSAQLRSMAHVHV----ASVDQLTYEEFIRSIPTPTTLAVIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +    ++  ++++ L G + ++      R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLKGNAVLEIDPSVTFSIIDRLFGGTGQSTMV--QRELTDIEASVMEGVIVRILANMR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   +  P L          +      +E V  + +   +          IP  T +
Sbjct: 166 EAWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYIT-I 222

Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  LSSQ        + +   +     K   +++++   +   K  ++DV+ L+ G 
Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLKEKLSTVDMDVVAEVGSLKLPVRDVLNLRAGD 282

Query: 264 VIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           V+     R      LS   ++ + C+ G VG    ++I ++I
Sbjct: 283 VVRLTDTRVGHPFTLSVGSRKKFWCQPGVVGNKVAVQILEKI 324


>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
 gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
           49176]
          Length = 326

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 11/283 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I    G L    LP   ++     V +     ++  +    +S     + +  +L
Sbjct: 52  RTLESIFEHYGRLLSANLPAYLRK----TVQVEVRGSEAITYQEFQNSLSNPVLLAIMNL 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  SNNL  T+++ LLG      P    R  S +E  + +R +   +  L +
Sbjct: 108 PPLKGSCIMEMSNNLGYTIIDRLLGGEGN--PIEKTRDFSEIEIVVLERILNTCTNYLEE 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E +P L          +  +    E    I +++ I  V       +P   L  
Sbjct: 166 PWHNVVEITPTLMRIETNAQYAQIIS--PQEMTALITLSIKIGTVEGFMSFCLPFTALED 223

Query: 209 TTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 +    S  Q +D     +       +  + I   +     ++ D V L+ G V+
Sbjct: 224 VMDRLNTKFWFSALQEKDDTNYGEQIEEIIDRAQIPIRAVLGKSVVSVNDFVNLQPGDVV 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               +      +     + +    G     Y +RIT  I  ++
Sbjct: 284 RLNAKVDDELDVFVGNMKKFKALPGASSGVYALRITKVIREEE 326


>gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
 gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
          Length = 330

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 109/285 (38%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++ +I  +        L   F  ++   V IS  S     +   I S  +  + +    
Sbjct: 53  RSLTRIHENFAR----LLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFEP 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  + N+   +L+ LLG    +I ++ N  L+ +E ++  +   +      +
Sbjct: 109 YPLEGRLLMEVNPNVAYAMLDRLLGGKGISINKIEN--LTEIETRIMSQLFQRTLDSFEE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S+  E  P +E+        +  +   NE V  I+++ TI   +    + +P   +L+
Sbjct: 167 AWSSVVEMDPVMEEIEVNPQFLQMVS--PNETVVVISLSTTIAETSGMINICLPH-VVLE 223

Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS     Q K +       +    K  +  + I + +   + T+ + + L  G V
Sbjct: 224 EVLPKLSVHYWMQEKKKQHQPGEKEAIEAKIKKAPLLIQSELGRSEITINEFLQLGEGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I          +++  G++ +  + G++     +++TD I   + 
Sbjct: 284 IELDQLINEPLLVTVEGEKKFYAQPGKMKNKMAVQVTDVIEEAED 328


>gi|303325483|ref|ZP_07355926.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3]
 gi|302863399|gb|EFL86330.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3]
          Length = 326

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 85/262 (32%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   V+++  S    KF   + S       +   +     N  +   
Sbjct: 60  RFARLCTNALSNAVRKRVELNPISIDMTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN+ G +  T P++  R  + +E+ +  + +      + +      +    L
Sbjct: 120 SRLVFALVENVFGGAG-TQPKIEGREFTRIEQAVVDKIVKIALDNMEESWRPVHDVKLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I   + ++    S ++ +P  T ++     L +  ++
Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDTALGSMIICLPYAT-IEPIRSKLHASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +     +  +  V +         T   ++ +++G V+      +     +
Sbjct: 236 ERLEVDHAWVARLKERLLETPVELKVHYGNTTITGNQLLRMQVGDVLVLDTDVEDLLTCT 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   Y    G V      +I
Sbjct: 296 VAGVGKYQGIAGTVKAMKAFQI 317


>gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
 gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
          Length = 366

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 8/278 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       M   V+I   S     +   + S      F+  S+     N  +  + +
Sbjct: 66  ARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPS 125

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           +   +++ LLG + E      NR L+ +E  L    +  I   L +  +   +  PN+E 
Sbjct: 126 IAFPMIDRLLGGTGEN--FETNRELTDIEVNLLDAVLRMIMQRLKESWAMITDMYPNVEA 183

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219
                 + +  +   NE V  + M + + N +    L  P    L+  L  L++++    
Sbjct: 184 KESSPNVVQIVS--QNEIVIMVVMEIIVGNSSGMINLCYPV-IYLEPILSRLANRDIMLG 240

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +  +           +  V  +  +     ++ + + LK G ++         AI+  
Sbjct: 241 ETSAKKSRNKELKTLIGRAEVLYEAILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCI 300

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + KE++  E+G      +I+I   I  D+  +KN L K
Sbjct: 301 DKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKNILEK 338


>gi|78485773|ref|YP_391698.1| flagellar motor switch protein FliM [Thiomicrospira crunogena
           XCL-2]
 gi|78364059|gb|ABB42024.1| flagellar motor switch protein FliM [Thiomicrospira crunogena
           XCL-2]
          Length = 339

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +   + F E +   V+++    +  K    + +       +   ++  +       
Sbjct: 59  ERFARGFQRHFNEMIMSSVEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTL 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + L+ T ++   G +     ++  R  + VE  + +  +   S  L +  +   +    
Sbjct: 119 DSKLIFTAVDMYFGGTGLLPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMD---- 174

Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
                +IDY+    N        + + +    +N+  E V     +++P   +L+     
Sbjct: 175 ----IEIDYMHSEMNPKFASIVDATDMIVVSPINVRFEGVEGRVDIVMPYA-MLEPVRDK 229

Query: 214 LSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           L     N               +T  + + +   +   + ++ D++ ++ G +IP    E
Sbjct: 230 LEEGMSNLQGESDNRWSRTLKEETKNIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMPE 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                + A G  +   ++G       ++I   +   
Sbjct: 290 --LVTVKAEGIGVLKGKVGESRDRKAVKIEQILRHP 323


>gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 329

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 98/283 (34%), Gaps = 11/283 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  ++   +  FL    +      V +S  S +   +    +S       +    
Sbjct: 53  RTLQMIFENMSRSFTTFLSGYLRTL----VQVSIVSVEQITYYEFSNSLTNPVFIAVIDA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  +NN   T+++ +LG           R  + +E  L  R   Q+  ++  
Sbjct: 109 KPLDGPIILEFNNNTTFTIIDKILGGIGT--ADTVERDYTEIEMGLLSRITTQLLPLIKD 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E +P +          +  +   NE +    M++ I +        +P  T++ 
Sbjct: 167 AWINVIELNPEITRIETNSQFSQIIS--PNETIALCTMSLKINDNEGLINFCLPHITIV- 223

Query: 209 TTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
             L  L+++    N  +   D      K     + +   I + K T++D++    G ++ 
Sbjct: 224 PILPLLTTKTWFSNAEKQSCDIGIIKDKISNTYIPLKAVIGMSKITVRDLLNFNKGDILE 283

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              + K    +  N +  +    G   K Y ++IT+  +    
Sbjct: 284 INKKYKDPIEIKINDETKFLGVPGIKNKKYCVQITEICSEGDD 326


>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
 gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
          Length = 332

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 10/284 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L       M  ++     S Q   +   IHS     V +    
Sbjct: 53  RTLELIHDNYARIMSNYL----TAHMRKNIKAKIESVQQITYEEFIHSIPNPTVLTVFKA 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              +       +   V  +++ LLG +     +   R  + ++K + K+    +   +  
Sbjct: 109 PPLNGTVLFETNPKFVFEVMDVLLGGN-AEGREYKLREFTDIDKNIIKQVNEGLIEGIKL 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--- 205
                 E  P +E          N     NE V  I  ++ +   ++   + IP  +   
Sbjct: 168 AWEDILELYPEIESIET--NPALNQTLAPNEPVALITFSVDMGKSSTFINICIPYLSIEK 225

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           +L   +I    Q  +E   E+       +   +   +   +   K T+++ + L +G V+
Sbjct: 226 ILDKLVIQYWFQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDVL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              ++      ++   +     + G V KN  I+I D ++ D +
Sbjct: 286 ILDNQIDKPISINVENQLYAYGKPGVVDKNMGIQILDILDKDVE 329


>gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
 gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
           35185]
          Length = 334

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 102/279 (36%), Gaps = 10/279 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +   V++   S +   +   + S     V    +L     N  +  
Sbjct: 61  ENFARLLNTHLSTHLRTMVNVEVVSVEQLTYQEFLQSLSNPSVIGVMALPPLKGNIIMEV 120

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +  +    ++ + G   E   +   R L+ +E+ + ++ IA+ S  L +  S   E +P 
Sbjct: 121 NTGIAFAYIDRVFGGLGENTLKP--RILTEIEEAVMRKFIAKASEFLKESWSNVIEINPI 178

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---- 215
           LE                ++ V  + + + I  V     L IP   +L+  +  LS    
Sbjct: 179 LEAIE--ANPGFVQIVPPSDMVIIVTVQVKIGEVEGFMTLCIPY-LVLEPVMSKLSTSFW 235

Query: 216 -SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
            + + +++ + D I    +K ++  + +   +     T+++ +TL  G V+    + K  
Sbjct: 236 VAASVAKDNNPDKIRALEKKIHKSPIPLIVELGTIDMTIREFLTLGFGDVLQLDTKVKDE 295

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             +    K  + C  G  GK   ++IT       +    
Sbjct: 296 LKILVGQKPKFLCRPGTQGKRSAVQITQVAFEGDEDTDE 334


>gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
           15579]
 gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
           15579]
          Length = 331

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 106/286 (37%), Gaps = 11/286 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S Q   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +   V  +++ LLG +     ++  R  + ++K + K+    +   L  
Sbjct: 109 PPLNGSVLFETNPQFVFQMIDVLLGGNGNGNYKM--REFTDIDKNIMKQINTGLITNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                 E    +E          N      E V  I  ++ +    +   + IP  ++  
Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L+  ++    +   E   E+       +   +++ +   +     T++D + L +G V+
Sbjct: 225 VLEKLVVQYWFRENDEESIEESSSKIKERINIVSMELTAELGRTSVTVEDFLRLSVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
               + +    L    +  Y  + G +GKN  ++I D+I+ D +S 
Sbjct: 285 ALDTKTEEPVHLLIEKEPGYYAKPGVIGKNIGLQILDQIDKDVESY 330


>gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
           5427]
 gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
           5427]
          Length = 328

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 106/285 (37%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  S G     +L    +      V     + ++  +S   ++     + +    
Sbjct: 53  RTLEIIFESYGRAISTYLSGHLRTM----VSAEVMNAEAVTYSEFSNALINPVILAVTDF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  S N+  T+++ +LG S   +  +  R  + +E+ + ++   Q   +L +
Sbjct: 109 RPLKGSILLELSPNMGYTIIDRVLGGSGSGLETI--REFTDIERVILEKIFIQFVQLLAE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P LE       + +  +   NE +  + +N+ I NVA    + IP   +++
Sbjct: 167 PWQNVVELDPMLEKIETNSQVVQIIS--PNEIIALVTLNIKIGNVAGMMNICIPH-LVIE 223

Query: 209 TTLISLSSQNKSENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           + +  L+++     + ++L     +   +   +  + I   +     T+++ + L    +
Sbjct: 224 SIMDKLNTKFWFAQKEQELGPSYHEYIEKMIEKSRIPIKAILGKTHITVREFLELSRSDI 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +       +   +       ++   G       I+I   I  + +
Sbjct: 284 VKLDKDIDSGLDIYVGNILKFTGSPGEYKNKVAIKINHVIQREDE 328


>gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 331

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 9/284 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           ++   +   + + L      ++     I   S     +   I S     V     +    
Sbjct: 53  RVLRRMHEHFCRLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLE 112

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  +  +V  +L+  +G       ++  R L+ +E  L +R    + ++L +   +
Sbjct: 113 GRMVMEMNPQVVFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKS 170

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            + T    NE V  + +++ +        L IP  T ++  L 
Sbjct: 171 VIDLDPQFVSLESNPQFLQLT--TPNETVLVVTISVRVGETTGLINLCIPHVT-IEPVLS 227

Query: 213 SLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS         ++    + D    K   + V++   +   + T+++V+ L  G  I   
Sbjct: 228 KLSNRYYMDPAFQSGRRQVNDELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLR 287

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
              +  A++  +G+  +   +G+  + Y ++I  +   D    +
Sbjct: 288 QTIRDPALVYVDGRPAFWGSVGKRNRVYAVKIVGQWEADADGGR 331


>gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 331

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 9/284 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           ++   +   + + L      ++     I   S     +   I S     V     +    
Sbjct: 53  RVLRRMYEHFCRLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLE 112

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  +  +V  +L+  +G       ++  R L+ +E  L +R    + ++L +   +
Sbjct: 113 GRMVMEMNPQVVFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKS 170

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P            + T    NE V  + +++ +        L IP  T ++  L 
Sbjct: 171 VIDLDPQFVSLESNPQFLQLT--TPNETVLVVTISVRVGETTGLINLCIPHVT-IEPVLS 227

Query: 213 SLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            LS         ++    + D    K   + V++   +   + T+++V+ L  G  I   
Sbjct: 228 KLSNRYYMDPAFQSGRRQVNDELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLR 287

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
              +  A++  +G+  +   +G+  + Y ++I  +   D    +
Sbjct: 288 QTIRDPALVYVDGRPAFWGSVGKRNRVYAVKIVGQWEADADGGR 331


>gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
 gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
           YUAN-3]
          Length = 335

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 113/303 (37%), Gaps = 17/303 (5%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S  K   P    +  +        KT+  I  + G L   +L    +        +   +
Sbjct: 31  STEKKVRPYDFKIPKKF--NKEQMKTLSIIYENYGRLLSSYLSGTLRSY----CKVEVLT 84

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  +F    ++ + N +     +     +  +  S ++   +++ LLG   E      +
Sbjct: 85  IEEQRFFEYSNALESNVLMGVLDMKPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYE--AD 142

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  + +E +L ++ +  +  ++           P+     +     +  +   NE V  +
Sbjct: 143 RDYTDIEMQLLRQVVQTVCRLVGDAWENVYALQPDFVRLENNSRQSQLVS--PNETVVIV 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-----SSQNKSENQSEDL-IDPFARKTYQL 238
            +++ I +V  +    IP   +L+  L  L      ++++S+   E    +   RK  Q+
Sbjct: 201 MLDVEIRDVVGNISFCIPY-VILEPVLEHLNTRYWFTESRSKTGDEQASRENLLRKVRQI 259

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +   +   + TL + + L++G V+P        A + +  ++ +   LG    N  I
Sbjct: 260 PIELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVYSGKEKWFEGTLGTWHNNRAI 319

Query: 299 RIT 301
           R+ 
Sbjct: 320 RVD 322


>gi|312115267|ref|YP_004012863.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220396|gb|ADP71764.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC
           17100]
          Length = 314

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 7/260 (2%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
             F+E     V        SG    ++ +  +           W +   IG    LV ++
Sbjct: 47  DEFREYCSPAVTAFVNQIVSGDSWDLLEACSDGVSV-IFYCREWDARIVIGVERRLVFSI 105

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
           ++ + G     +P    RS + +E K+ +      +    +   T  E +   E      
Sbjct: 106 VDAMYGGDGSELPYEDKRSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTET-- 163

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSE 225
            L   +    N  +    +   + +V     ++IPQ  LL      L  Q      +   
Sbjct: 164 ALDFASLGQHNMMLIHAQILFQVLDVGGVMFVLIPQNVLL-PVRQKLERQRAPMLSSVDP 222

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
                 +++  +  V +D  I  K+  L  +  L++G+ +     E+        G  ++
Sbjct: 223 RWTSLLSQRVSRAEVTMDAVILGKEIELGQMFKLEVGKTLELEGTER-NIFFEYEGDRLF 281

Query: 286 SCELGRVGKNYTIRITDRIN 305
              LGR    YT+ I + ++
Sbjct: 282 RGCLGRERGTYTVTIDEALS 301


>gi|119469993|ref|ZP_01612798.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
 gi|119446703|gb|EAW27976.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
          Length = 230

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 19/197 (9%)

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNE 179
             +  E+++ +  +  I     +  +   + S         +YL    N          E
Sbjct: 12  EFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMANIVSPTE 63

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQ 237
            V   + ++ ++     F + +P   +L+     L +  +S+ +  D         +   
Sbjct: 64  VVVISSFHIELDGGGGDFHIALPYS-MLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMD 122

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + V++ T++     TL+ ++ LK G +IP    E     +       +  ++GR   N  
Sbjct: 123 VEVDMSTQLLEVDLTLQQIMELKAGDIIPVEMPEH--ITVFVEELPTFRAKMGRSRDNVA 180

Query: 298 IRITDRINFDQKSLKNF 314
           ++I+++I          
Sbjct: 181 LQISEKIKRPDSVKSEL 197


>gi|148259983|ref|YP_001234110.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5]
 gi|326403062|ref|YP_004283143.1| flagellar motor switch protein [Acidiphilium multivorum AIU301]
 gi|146401664|gb|ABQ30191.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5]
 gi|325049923|dbj|BAJ80261.1| flagellar motor switch protein [Acidiphilium multivorum AIU301]
          Length = 337

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 99/294 (33%), Gaps = 6/294 (2%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
           +RL     D      ++  +     + L    +     +V++  T   S + +       
Sbjct: 47  SRLLYGRADSYERLPMAEVVFERLSRILAGSLRNLFQDNVEVRLTRLASRRLADSFAEIA 106

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKR 137
              +        W +   I      V  L E LLG            + ++++ + L +R
Sbjct: 107 PMALLGVFRAREWDNLGLIHVDAMTVSNLTEILLGGRRVAAATGQLPKPVTSISRNLTER 166

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            I  +   L    +   + + + E   + D       R ++    T  +++         
Sbjct: 167 LIRVVLHDLRNSFAPICDVTFDFER-TETDPRFATIGR-NSGVALTARLSLHSAGRNCMI 224

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKD 255
            +I+P  T L+     L  Q   E    D       A + +  ++ ++  ++ +   L  
Sbjct: 225 DIILPFAT-LEPVRELLLQQFMGEKFGRDSIWESHLAEELWHTDIELEAVLDEQTMKLGA 283

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+ L++G +IP      +   L     ++++  LG         I   I+ +++
Sbjct: 284 VMDLRVGDIIPINAPRGSDVTLRCGSVDLFAGRLGVRHGRLAAEIRGWISRERE 337


>gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
           DSM 574]
          Length = 330

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 102/278 (36%), Gaps = 9/278 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   Y + L       +   + I   S     +   I+S     V +  SLS       +
Sbjct: 58  LHEGYARLLSNFLSGYLRTTITIEVASIGQFTYEEFINSVPTPTVMTIFSLSPLKGTALM 117

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
             +   +  L++   G S +   ++  R L+ +E  +A R I ++   L          +
Sbjct: 118 ETNLQFLFPLIDLQFGGSGDMPMKV--RELTDIELSVANRIIKRLLDHLTVTWKDIATIT 175

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS 216
           P +E      +L +      N+ V  +  +  + N V     + +P    L   L   S+
Sbjct: 176 PKIESIDANPHLHQL--MSPNDIVAVLTFSTAVGNEVKGLINMCLPYN-FLDPVLAKFSA 232

Query: 217 QNK---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            N+      Q E  ++       + +V I   +     ++KD + L++G V+P       
Sbjct: 233 ANQFTRDNEQKEQDLEALEFWLGESDVEISVVVGETDISVKDFLQLQVGDVLPLARGFNQ 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
              +  + +  Y  ++G VG++  +++T       + +
Sbjct: 293 DLDMYVDNELKYKVQVGTVGQSLAVQVTSLAEEAWEIV 330


>gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 327

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 86/274 (31%), Gaps = 6/274 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +G  Y + + +     M   V I   S ++  FS    S       +        +N  +
Sbjct: 58  MGENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNPIALAIVDPYPLKNNMLL 117

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
             S N+    LE LLG     +  +  R  +++E  +  R +      + +         
Sbjct: 118 ELSTNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLEHFVDYMREPWENMVALK 175

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT--TLISLS 215
           P +        +         E V  I  ++    V     L IP  T+      L +  
Sbjct: 176 PRMSRVETNSQILNMI--APTEMVALITFSIQFGAVDGLMNLCIPYLTVEPIMDKLNTSY 233

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               S+++  +          + N+ +   +     T+K+ + L+IG +I       +  
Sbjct: 234 QFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLDTTIDSLI 293

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +       +    G       ++I   ++ +  
Sbjct: 294 DVYVGNVVKFKAVPGIHKNKSAVQIKQILDKEDD 327


>gi|213646780|ref|ZP_03376833.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 293

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 85/266 (31%), Gaps = 8/266 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +     
Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKT 273
                L  ++ LK G V+P    ++ 
Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKPDRI 292


>gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
           12168]
 gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
           12168]
          Length = 344

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 14/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  +  +   L    L    +      V +   S     +   I S       +  ++
Sbjct: 53  RTVSIMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPTTLAVINM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +     +  ++++ L G + +       R L+ +E+ + +  I +I A + +
Sbjct: 109 DPLKGNAILEIDPAITFSMIDRLFGGTGQGAKV--QRDLTDIEQSVMEGIIVRILANMRE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +   +  P L          +      +E V  + +   +          IP  T ++
Sbjct: 167 AWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYLT-IE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LSSQ    +               K   +++++   I      ++DV+ L++G +
Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYLGVLKEKLSDVDMDVVAEIGSVSLPIRDVLALRVGDI 283

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +     R      LS   K+ + C+ G +GK   +++  +I   +
Sbjct: 284 VRLSNVRITDPITLSIGNKKKFLCQPGVIGKKMAVQVLSKITQGE 328


>gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 335

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 105/284 (36%), Gaps = 13/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           + I+ I  S        L  + +  +  +V           +   I S  +  V     +
Sbjct: 53  RAIQMIHDSFARQLTTSLSTLVRSMVSSEVVSV----DQLAYDEFIRSLVQPTVIGVLEM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              S N  +  + +LV  +++ +LG   E I +   R L+ +E+ + +R + +I   L +
Sbjct: 109 YPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRKP--RDLTDIERTVVERVMLKILEHLEE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  +     E      +  +       + V  + + + +        L IP   + +
Sbjct: 167 SWSTVVDIRFRFESMESNPFFVQIC--PGTDMVLLVTLKVQVGEAEGIMNLCIPYFVM-E 223

Query: 209 TTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKK--TTLKDVVTLKIGQV 264
             +  LSSQ+   +     ++      +     V +   + L     +L DV+ L+ G V
Sbjct: 224 PMIDKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           I    +      L    +  + CE G   K+Y  R+ + ++ ++
Sbjct: 284 IRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEE 327


>gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
 gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
           WM1]
          Length = 339

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 106/281 (37%), Gaps = 9/281 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSS 90
           KI  S+   Y +              ++S  + +  ++    ++  +N V +  +  L  
Sbjct: 53  KILKSIFDNYSRIAGSQINSLFRTSSELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPD 112

Query: 91  WSSN--FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            S N    I  S  L+++L++ +LG   +      + + + +E  L +R I  I   L  
Sbjct: 113 SSKNPPLLINASMTLMLSLIDRMLGGVGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKD 172

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S+    +  L    +   + +      +E +  + +++ ++  +    + IP   L+ 
Sbjct: 173 SWSSYINLNFELSRLEENPSMFQEIGV--DETIVIVVLDVDMKECSGRLNVCIPGNLLMN 230

Query: 209 TTLISLSSQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              I    ++ +      S+D            ++ +  ++     TL DV  L +G VI
Sbjct: 231 IFDIMDKRKHSAMGDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVI 290

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                + +   L   G+  +  +LG   +N  +RI D +  
Sbjct: 291 NLGTPKDSDVQLYVEGQPWFRGQLGVHKRNVAVRIEDHVET 331


>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 332

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 107/284 (37%), Gaps = 12/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +L      FL    +      V+++  S     +    +S       +    
Sbjct: 55  RTLQMIFENLSRSLTSFLSGYLRTI----VNVTVVSVDQLTYYEFSNSLNNPVFIAIIDA 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + QI  +  +
Sbjct: 111 APLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   + +P+L          +  +   NE V    +++ I          +P  T L+
Sbjct: 169 PWSNILDINPSLIRVETNSQFAQIIS--PNETVALCTLSIKINETEGIMNFCMPHLT-LE 225

Query: 209 TTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +  L+++    +  ++     +    K  +  + +  ++     T+K+ + L+IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLELEIGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +  + K  +    G     Y++RIT+ I    +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329


>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
 gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
 gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
 gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 332

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 107/284 (37%), Gaps = 12/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +L      FL    +      V+++  S     +    +S       +    
Sbjct: 55  RTLQMIFENLSRSLTSFLSGYLRTI----VNVTVVSVDQLTYYEFSNSLNNPVFIAIIDA 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + Q+ ++  +
Sbjct: 111 APLEGLFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   + +P+L          +  +   NE V    +++ I          +P  T L+
Sbjct: 169 PWSNILDINPSLIRVETNSQFAQIIS--PNETVALCTLSIKINETEGIMNFCMPHLT-LE 225

Query: 209 TTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +  L+++    +  ++     +    K  +  + +  ++     T+K+ +  +IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +  + K  +    G     Y++RIT+ I    +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329


>gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
 gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
          Length = 363

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 8/278 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       M   V+I   S     +   + S      F+  S+     N  +  + +
Sbjct: 66  ARNLASQISSMMRSIVEIKLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 125

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           +   +++ LLG   ++      R L+ +E  L    +  I   L +      E  P++E 
Sbjct: 126 IAFPMIDRLLGGQGDS--FDTLRELTEIELNLLDSILRIIMQRLKESWMNVTEIYPSVEA 183

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219
                 + +  +   NE V  + M + I N +    +  P    L++ L  L++++    
Sbjct: 184 KESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLESILSRLANRDIMMG 240

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             +  +           +  V  +  +      + + + LK G ++         AI++ 
Sbjct: 241 ETSAKKSRNKELKTLIGRAEVIYEAMLGKTFINVNEFLDLKQGDILKLDRSADDKAIVAI 300

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + KE++  ++G      +I+I + I  D+  +K  L K
Sbjct: 301 DKKEVFLAQVGLHRFRKSIKILELIKTDKDEIKEMLEK 338


>gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
 gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
          Length = 356

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 107/284 (37%), Gaps = 8/284 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSNQISAIMRSIVEIQLHSVDQMTYGEFLMSLPTPTSFNVFSMKPMDGAG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG   +       R  S +E  L    + QI   L +  +   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGRGD--QYDDTREFSNIELNLLDTILRQIMQNLKESWAAVAE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P+++       + +      NE V  + M + I + +    +  P  + L+T L  L+
Sbjct: 175 IFPSIDAKESSPNVVQIV--AQNEVVVMVVMEIVIGHSSGMMNICYPVIS-LETILSRLA 231

Query: 216 SQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           S++   ++    +             +V+I   +   + + K+++ LK+G VI       
Sbjct: 232 SRDLMMSETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVIMLDRVAD 291

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
               +S +G++ Y  ++G      TI+I D I  ++  +K  + 
Sbjct: 292 DTVHVSIDGRDKYRAKIGLQRFRKTIQILDEIKTEKDQVKEMIE 335


>gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21]
 gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21]
          Length = 325

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 94/244 (38%), Gaps = 8/244 (3%)

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +         +   +        I     LV T+++++LG S    PQ  NR  +
Sbjct: 86  KFGDFLSVLPNPVCMAIYKMDPLKGAALIAFDATLVFTIVDSILGGSG-VQPQGMNRLFT 144

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMN 187
           ++E +L ++ +    A L +  +    ++ NL     ++   +  N +  E+ V T++M 
Sbjct: 145 SIELRLVEKIVKDALADLERAWAPLCPATMNLLR---LEMNPRLVNIVPPEYQVVTMSMK 201

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245
           + IE    S +L IP  T ++     L    + +  + D       + +     +++   
Sbjct: 202 IQIEETVGSMILAIPFLT-IEPIRDKLKRGVQMDMMAVDPLWSYRLSEELMGAPMDLSVE 260

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +     +L D++ L  G  I      K    +   G + +    G  G N  ++IT  + 
Sbjct: 261 MGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALT 320

Query: 306 FDQK 309
              +
Sbjct: 321 AGGE 324


>gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51]
 gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 338

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 103/274 (37%), Gaps = 9/274 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L       +   ++   +S +   +   I S     + S  +L+       +  
Sbjct: 67  ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 126

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S  L   +++ LLG   +   +  NR L+ +E+ +      Q+  ++ +  S    + P 
Sbjct: 127 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVIPNEPE 184

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---- 215
                      +      NE +  + + + +  +     + +P   +L+  L  LS    
Sbjct: 185 YIVLETNPQFTQIV--APNEMIILVTLEVQVGEMVGMVNMCLPY-LVLEPVLDKLSTLFL 241

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
              +++  S++ ++   RK     V++ T +   +  ++D++ L  G VIP +   K   
Sbjct: 242 FSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEAL 301

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +       +    G  G++  ++IT+ +   + 
Sbjct: 302 PVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 335


>gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis
           HTCC2601]
 gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601]
          Length = 313

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 8/278 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            +   L +  K  +    ++S            +    +  + S  +   W        +
Sbjct: 38  RFSLSLAQTLKSYLGAMAEVSLGGIDYLSCQDALKDQPDPSLISVTTAEEWGGTIAAIMT 97

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
             L+  ++E   G       +   R+ +++EK++ +     +   L+   +     + ++
Sbjct: 98  PELLFGIIEITFGGRTVATGEKKTRNFTSIEKRIGQNFTETVLTELSNAFAKVTPVNFDI 157

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                    K               + + IE      V ++P     K  +  + SQ  +
Sbjct: 158 SHLET--NPKALLLAPPTSACVRARLTIDIEGRIGEMVFVLPNTAFEK--VSHILSQQFT 213

Query: 221 ENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             Q                  NV +   +      ++DV+    GQV+    +      L
Sbjct: 214 GGQLGGDSGWRLKMTDMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTL 273

Query: 278 SANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLKNF 314
              GKEI   E+G R      +++++++  ++ S  + 
Sbjct: 274 CCAGKEIARAEVGHRKNGRIALKLSEKLYEEKDSPDDL 311


>gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 332

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 106/284 (37%), Gaps = 12/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ I  +L      FL    +      V+++  S     +    +S       +    
Sbjct: 55  RTLQMIFENLSRSLTSFLSGYLRTI----VNVTVVSVDQLTYYEFSNSLNNPVFIAIIDA 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +     F +  +NN    +L+ +LG   +   +L +R  + +E  L  + + QI  +  +
Sbjct: 111 APLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   + +P+L          +  +   NE V    +++ I          +P  T L+
Sbjct: 169 PWSNILDINPSLIRVETNSQFAQIIS--PNETVALCTLSIKINETEGMMNFCMPHLT-LE 225

Query: 209 TTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             +  L+++    +  ++     +    K  +  + +  ++     T+K+ +  +IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLEFEIGDII 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                 K    +  + K  +    G     Y++RIT+ I    +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329


>gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18]
 gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18]
          Length = 325

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 7/236 (2%)

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           KF   +         +   +        I   + LV T+++++LG S     Q  NR  +
Sbjct: 86  KFGDFLSVLPSPVCMAIYKMDPLKGAALIAFDSTLVFTIVDSILGGSGVPSGQGMNRLFT 145

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMN 187
           ++E +L ++ +    A L +  +    +S NL     ++   +  N +  E+ V T++M 
Sbjct: 146 SIELRLVEKIVKDALADLEKAWAPLCPASMNLLR---LEMNPRLVNIVPAEYQVVTMSMK 202

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245
           + IE    S +L IP  T ++     L    + +    D       + +     ++I   
Sbjct: 203 IQIEETVGSMILAIPFLT-IEPIRDKLKRGVQMDMMVMDPLWSYRLSEELMGAPMDISVE 261

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +     +L D++ L  G VI      K    +   G + +    G  G N  ++IT
Sbjct: 262 MGGATVSLADLLGLTPGDVIMLDSSGKDELSVKVGGTKKFMGIAGVSGGNKAVQIT 317


>gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
           12809]
          Length = 336

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 103/285 (36%), Gaps = 12/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           ++I  +       +   L    +       DI+ TS     +   + S  +   F+  S+
Sbjct: 55  RSIRNLHDKFARNFSSTLSNYLRTIT----DITLTSVDQMTYGEFLMSLPDPTSFNIISM 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + +LV  +++ LLG + +  P    R L+++E+ +    +  I   L +
Sbjct: 111 IPMEGNAVLEINPSLVFPIVDKLLGGTGK--PLFQTRELTSLEQHIMDGILGLILKDLEE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   +  L+     +          NE V  +   +    V     L IP   +L+
Sbjct: 169 VWRQIIP-NIRLKKELSENSPHIIQIVSQNEVVILVVCEVKFGEVLGMMNLCIP-AIVLE 226

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  +SS +      + L      +         V     +   K T++DV+ L+ G +
Sbjct: 227 PVLGKISSSDWLIGAKKGLQGEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDL 286

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           + F  ++     +  N K+ +  E+G +G    ++IT  I     
Sbjct: 287 VMFNVKQDRPVEIHFNNKQKFLGEVGTLGVKKAVKITQFITESDD 331


>gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
           DCB-2]
 gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
           DCB-2]
          Length = 331

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 103/274 (37%), Gaps = 9/274 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L       +   ++   +S +   +   I S     + S  +L+       +  
Sbjct: 60  ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           S  L   +++ LLG   +   +  NR L+ +E+ +      Q+  ++ +  S    + P 
Sbjct: 120 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVISNEPE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---- 215
                      +      NE +  + + + +  +     + +P   +L+  L  LS    
Sbjct: 178 YIVLETNPQFTQIV--APNEMIILVTLEVQVGEMVGMVNMCLPY-LVLEPVLDKLSTLFL 234

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
              +++  S++ ++   RK     V++ T +   +  ++D++ L  G VIP +   K   
Sbjct: 235 FSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEAL 294

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +       +    G  G++  ++IT+ +   + 
Sbjct: 295 PVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 328


>gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
           11293]
 gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
           11293]
          Length = 341

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 93/280 (33%), Gaps = 14/280 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  +  +   L    L    +      V +   S     +   I S          ++
Sbjct: 53  RTVSIMHETFARLTTTALSAQLRSM----VHVHVASVDQLTYEEFIRSIPNPTTLGIINM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +     +  ++++ L+G   E      NR L+ +E+ + +  I +I   L +
Sbjct: 109 DPLKGSAVLEIDPAITFSVIDRLMGGQGEGSKV--NRDLTDIEQTVMEGIIVRILGNLRE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   +  P L          +       E V  + +   +  V       IP  T ++
Sbjct: 167 AWSQVIDLRPRLGQIETNPQFAQIV--PPTEMVVLVTLETKVGEVEGMMNFCIPYLT-IE 223

Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LS+Q    +               +   + + +   I     T++DV++L+ G V
Sbjct: 224 PIISKLSAQYMYSSVRSGATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDV 283

Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           I     R      +    ++ + C  G VG    ++I  R
Sbjct: 284 IRLPDVRVGDPMTIKIGNRKKFECRPGLVGNKVAVQIVHR 323


>gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
 gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
          Length = 328

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 105/278 (37%), Gaps = 15/278 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +    +DV+IS        +   I S          + 
Sbjct: 53  RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +       +L  T+L+ ++G   +  P   NR  + +E  + ++ +  +  +L Q
Sbjct: 108 DVFEGSAIFEMRLDLFYTMLDIIMGGPGDNPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q   P++E+       +       NE V  +  +++     S   +  P   LL+
Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221

Query: 209 TTLISLSSQNKSENQS----EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS +     +     E+ ++   + + ++ V +   I   +  LK+++ L++G V
Sbjct: 222 PLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVIGETELRLKEILDLEVGDV 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I      K    +   G+  +    G     Y +++T 
Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGTFKGKYAVKVTG 319


>gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 326

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 87/262 (33%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         +   V+++  S    KF   + S       +   +     N  +   
Sbjct: 60  RFARLCTNALSNSVRKRVELNPISIDMTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+E++ G +  + P++  R  + +E+ +  + +      + +      +    L
Sbjct: 120 SRLVFALVESVFGGAG-SQPKVEGREFTRIEQAVVDKIVKIALDNMEESWRPVHDVKLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I   + ++    S ++ +P  T ++     L +  ++
Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDTALGSMIICLPYAT-IEPIRSKLHASFQT 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +     +  +  V +         T   ++ +++G ++     E+     +
Sbjct: 236 ERLEVDHAWVARLKERLMETPVELKVCFGKTTITGNQLLRMQVGDILVLDKDEEDMLDCT 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
             G   Y    G +    + +I
Sbjct: 296 VAGVCKYQGIAGTIKAMKSFQI 317


>gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
 gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
          Length = 344

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 104/282 (36%), Gaps = 14/282 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T+  +  +   L    L    +      V +   S     +   I S       +  +
Sbjct: 52  MRTLSLMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +    ++  ++++ L G + +       R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLKGNAILEIDPSVTFSIIDRLFGGTGQGTKV--QRDLTDIENSVMEGVIVRILANVR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   +  P L          +      +E V  + +   + +        IP  T +
Sbjct: 166 EAWTQVIDLRPRLGQIETNPQFTQIV--PPSEMVVLVTLETKVGDEEGMMNFCIPYIT-I 222

Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  LSSQ        + +   +     K   +++++   +     +++DV++L+IG 
Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLKDKLSTVDMDVVAEVGFLNLSVRDVLSLRIGD 282

Query: 264 VIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           VI            LS   ++ + C+ G VGK   ++I ++I
Sbjct: 283 VIRLKDTHVGDPFTLSVGNRKKFLCQPGVVGKKVAVQILNKI 324


>gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
           Eklund 17B]
          Length = 331

 Score =  132 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 105/282 (37%), Gaps = 11/282 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V +   + +   +   IHS +   + +   +
Sbjct: 53  RTLELIHDNFARITSNYL----TGQIRKNVKVKIETVEQITYEEFIHSVQNPTIITIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +      +++ LLG S +   ++ N+  S ++K + ++    + + L  
Sbjct: 109 PPLTGSIIFETNPQFSFQIIDILLGGSGD--RKIGNKEFSDIDKNIIRQVTTGMISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                   SP +E          N     NE V  I  ++     ++   + IP  ++  
Sbjct: 167 AWEDILNVSPEVEGIET--NPAINQTLAPNEPVALITFSVEFGEHSTFMNMCIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    QN  E    +          ++++ +   +      + D + L  G +I
Sbjct: 225 VLDKLVVQYWFQNDDEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDII 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              ++  +   +    +E Y  + G  GKN  + I D I+ +
Sbjct: 285 KLDNKSSSPIKVYVGDEECYYAKPGVTGKNMGVAILDIIDKE 326


>gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
 gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
           4359]
          Length = 328

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 104/278 (37%), Gaps = 15/278 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +    +DV+IS        +   I S          + 
Sbjct: 53  RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +       +L  T+L+ ++G   +  P   NR+ + +E  + +R +  I  +L Q
Sbjct: 108 DVFEGSAIFEMRLDLFYTILDIIMGGPGDNPP---NRTPTDIETSIMRREVTNILTLLAQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q   P++E+       +       NE V  +  +++     S   +  P   LL+
Sbjct: 165 AWSDFQYFIPSIENIET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLN----VNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS++     +  + I+    +    +    + +   I     TL++V+ L+ G V
Sbjct: 222 PFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPLTVQAVIGEAWLTLREVLNLQEGDV 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I      K    +   GK  +    G+    Y ++IT 
Sbjct: 282 IRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKITG 319


>gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC
           35405]
 gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola]
 gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC
           35405]
 gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402]
          Length = 344

 Score =  132 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 105/283 (37%), Gaps = 16/283 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T++ +  +   L    L    +    + V     + +   +   I S       +  +
Sbjct: 52  MRTVQMMHETFARLTTTSLSAQLRSMAHVHV----ATVEQLTYEEFIRSIPTPTTLAIIN 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +    ++  +    ++  ++++ L G   +       R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLRASALLEIDPSVTFSIIDRLFGGKGQGSKV--QRELTEIESSVMEGVIVRILANMR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           +  +T  +  P L    +ID   +       +E V  + +   +        + +P  T 
Sbjct: 166 EAWTTVVDLRPRLG---NIDTNPQFVQIVTPSEMVLLVTLETKVGEEEGMMNICLPYIT- 221

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TLKDVVTLKIG 262
           L+  +  LS+Q    +        +A         V +D    +     +++DV+ L+ G
Sbjct: 222 LEPIISKLSTQFWFSSVRRASTGQYAAAIKDKLSTVEVDMVAEVGSLDVSIRDVLNLRAG 281

Query: 263 QVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            V+     R      L+   +  +SC+ G  GK   ++I ++I
Sbjct: 282 DVVRLPNVRVGDPFKLTVGSRPKFSCQPGVKGKKLAVQILEKI 324


>gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis
           MPA1U2]
 gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis
           MPA1U2]
          Length = 327

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 13/278 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+ +I  +      + L   F  ++   V +         +   + + ++  +      
Sbjct: 48  RTLSRIHENF----SRLLSSYFSAQLRTYVQVGVEVVAEISYEEFVENVQKKSMLGVFEA 103

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +    +  +  S N+V  + + LLG     + +     L+ +E  + +R  A+      +
Sbjct: 104 APLQGSMVMEFSPNVVHVMFDRLLGGQGHVLEKDSE--LTEIEISVIERVFAKALDCFQE 161

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +  + SP L++               NE V  + +   I NV     + +P   +L+
Sbjct: 162 AWLSVVKLSPELKEIEVNSQFLTT--SPPNETVILVKLQTKIGNVEGVINICLPH-VVLE 218

Query: 209 TTLISLSSQNKSENQSE--DLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS+++   NQ +  +  +      K +   + I   +        D + LK G V
Sbjct: 219 QILPKLSAKHWLANQKKAIEAHEVVALEEKLHGTKMEIKAVLGQSMIEFGDFLNLKKGDV 278

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I       +   L  + K  +  + G       I++T+
Sbjct: 279 IRLDESYDSPVTLQVDNKLKFYAQPGVSKGRMAIQVTE 316


>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
 gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
           1]
          Length = 325

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 8/263 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       +   V ++  S     F   I S     + S    S    +  +  
Sbjct: 58  ENFARILSNFLTAYLRTPVQVTLASVSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLET 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +   V  +++ L G   +T  Q+  R L+ +E  + +R + +I   L        E SP 
Sbjct: 118 NPQFVFPIIDLLFGGEGKTPKQI--RELTEIELTVMRRIVNKILENLRYAWEDINELSPQ 175

Query: 160 LEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
           +E   ++D   +    ++ NE V  + ++  I +      +  P  TL        +   
Sbjct: 176 IE---NMDTNPQFNQMIASNETVALLTLSTKIRDSEGLINVCFPFITLEPVIANLTAQHW 232

Query: 219 KSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            S +Q    +           ++V +   +      ++D +  + G VI    R      
Sbjct: 233 FSNSQISGGVHSRMLETGLEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMT 292

Query: 277 LSANGKEIYSCELGRVGKNYTIR 299
           L    K ++  + G       ++
Sbjct: 293 LLVEEKPMFKIQAGVSKGRRAVQ 315


>gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori
           Lithuania75]
          Length = 354

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + I  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335


>gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila
           RKU-10]
 gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila
           RKU-10]
          Length = 328

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 15/278 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +    +DV+IS        +   I S          + 
Sbjct: 53  RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +       +L  T+L+ ++G   +  P   NR  + +E  + ++ +  +  +L Q
Sbjct: 108 DIFEGSAIFEMRLDLFYTMLDIIMGGPGDNPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q   P++E+       +       NE V  +  +++     S   +  P   LL+
Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLN----VNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS +     +  + ++    +  + +    V +   I   +  LK+++ L++G V
Sbjct: 222 PLLEKLSDRFWMMGRKPERVEERIEELKKASQKVPVTVQAVIGETELRLKEILDLEVGDV 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I      K    +   G+  +    G     Y +++T 
Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVTG 319


>gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 331

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 106/282 (37%), Gaps = 11/282 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V +   + +   +   IHS +   + +   +
Sbjct: 53  RTLELIHDNFARITSNYL----TGQIRKNVKVKIETVEQITYEEFIHSVQNPTIITIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + +     +  L   +++ LLG S +   ++ N+  S ++K + ++    + + L  
Sbjct: 109 PPLTGSIIFETNPQLSFQIIDILLGGSGD--RKIGNKEFSDIDKNIIRQVTTGMISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
                   SP +E          N     NE V  I  ++     ++   + IP  ++  
Sbjct: 167 AWEDILNVSPEVEGIET--NPAINQTLAPNEPVALITFSVEFGEHSTFMNMCIPYLSIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L   ++    QN  E    +          ++++ +   +      + D + L  G +I
Sbjct: 225 VLDKLVVQYWFQNDDEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDII 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              ++  +   +    +E Y  + G  GKN  + I D I+ +
Sbjct: 285 KLDNKSSSPIKVYVGDEECYYAKPGVTGKNMGVAILDIIDKE 326


>gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 334

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 37  RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 96

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 97  VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 154

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 155 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 212

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 213 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 272

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 273 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 315


>gi|301165893|emb|CBW25466.1| flagellar motor switch protein FliM [Bacteriovorax marinus SJ]
          Length = 343

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 92/279 (32%), Gaps = 8/279 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   + +         +     IS  S    KF   +++            +       +
Sbjct: 66  ISERFIRSFRVSLSNSLRKISTISMISTDLLKFGEFVNTLPIPSCMCIMRFNELRGPALL 125

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              + L   ++++  G +     ++  +  + +E    K+ +      L +  +      
Sbjct: 126 VFESKLAYAIIDSYFGGTDRPFTKIEGKEFTMIELSFMKKVMDMAINDLEEAWAPVHRID 185

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
                               ++ +    + +  E+ + + ++++P  T ++     LSS 
Sbjct: 186 AQYLRTEINPQFVGVV--PPSDVIIATTLEVEFESASGTIMIVVPYST-IEPIKQKLSSS 242

Query: 218 NKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            +++N   D            Q +  +  ++     T+ D+VTL+ G +IP         
Sbjct: 243 FQTDNDMADSIWTQAMNEHIKQAHATMVVKLGETNITVGDLVTLEKGDIIPLNQEASGEV 302

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++   G E   C +G    N  ++IT   N D+   +  
Sbjct: 303 VVEVEGVEKMKCLIGTHKGNRAVQIT---NVDKTIKREM 338


>gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 322

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 99/272 (36%), Gaps = 8/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K   +  +    +   +S  S    KF   I+       ++  ++   + +  +  
Sbjct: 52  ERWAKIFREEIRSLFPVINMVSKNSITVMKFGDFINKIPLPASYTIFTMKPLNESALLVI 111

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + +V  L+  L G       ++  R  + +E  +    +  +     +   T       
Sbjct: 112 DSRVVFNLISALFGG-GARPFKIEGRDFTKLELNIIHDFVDTVLTSFEKIWQTVYPVEVE 170

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            +      +L +  +    E V  + M + IE +   F    PQ   L    I + S+  
Sbjct: 171 RKSVELNPFLVRIVS--PAEKVIVVEMILDIEGLEVPFSFAFPQMMFLPLKDI-IFSETS 227

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAIL 277
           S     D  +   +K     V ++  + L + T  +++++ L++G  I    ++     L
Sbjct: 228 SLEIPADWKENILKKL--SKVELNFTLELSRFTMLVEELLNLEVGSDIILNVKKDDSINL 285

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              GK  ++ +LGR  K Y   I DR+  ++ 
Sbjct: 286 MVEGKPKFTAKLGRYDKKYAAMIVDRVKGEED 317


>gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
 gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
 gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
 gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
          Length = 354

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + I  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335


>gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695]
 gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1]
 gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695]
 gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7]
          Length = 354

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + I  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335


>gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8]
 gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8]
          Length = 328

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 105/278 (37%), Gaps = 15/278 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +    +DV+IS        +   I S          + 
Sbjct: 53  RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +       +L  T+L+ ++G   E  P   NR  + +E  + ++ +  +  +L Q
Sbjct: 108 DVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q   P++E+       +       NE V  +  +++     S   +  P   LL+
Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221

Query: 209 TTLISLSSQNKSENQS----EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS +     +     E+ ++   + + ++ V +   I   +  LK+++ L++G V
Sbjct: 222 PLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVIGETELRLKEILDLEVGDV 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I      K    +   G+  +    G     Y +++T 
Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVTG 319


>gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12]
 gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12]
          Length = 354

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + I  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335


>gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
 gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
          Length = 331

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 13/283 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E +  +   +   +L      ++   V +   S +   +   +HS     + +   +
Sbjct: 53  RTLEMVHDAFARIISNYLS----GQLRKHVKVDIQSVEQITYEEFVHSIANPTILTIFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  +      +L+ LLG + +   +   +  S ++K +     +++   L  
Sbjct: 109 PPLQGNILLEMNPQFSFQILDILLGGTGDRDEK--AKEFSEIDKNILANITSEMIKSLIL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P  E          N     NE V  ++  + +    +   L IP  ++ K
Sbjct: 167 AWDGILEVKPEFEGLET--NPSANQTLAPNEPVALLSFLVELGKSTTYMNLCIPYLSVEK 224

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLK--KTTLKDVVTLKIGQV 264
             L  L  Q   +    +L D    K  +    V ++  + L   + T+ D + L  G V
Sbjct: 225 -VLDKLVVQYWFKTDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +    +      +    +E +  + G VGKN  I++ D ++ D
Sbjct: 284 LVLNSQYSDPVRVFVENEECFIAKPGIVGKNMGIQLLDILDKD 326


>gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
 gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
          Length = 328

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 15/278 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +    +DV+IS        +   I S          + 
Sbjct: 53  RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +       +L  T+L+ ++G   +  P   NR  + +E  + ++ +  +  +L Q
Sbjct: 108 DIFEGSAIFEMRLDLFYTMLDIIMGGPGDNPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q   P++E+       +       NE V  +  +++     S   +  P   LL+
Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  LS +     +  + ++    +      ++ V +   I   +  LK+++ L++G V
Sbjct: 222 PLLEKLSDRFWMMGRKPERVEERMEELKKVSQKVPVTVQAVIGETELRLKEILDLEVGDV 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           I      K    +   G+  +    G     Y +++T 
Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVTG 319


>gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str.
           Sheeba]
 gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba]
          Length = 354

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 104/311 (33%), Gaps = 6/311 (1%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+ +P   + L          K   +   S+     + L       M   V+I   S   
Sbjct: 29  KDITPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
             +   + S      F+  S+        +  + ++   +++ LLG          NR  
Sbjct: 89  MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGS--AYDQNREF 146

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           S +E  L    + Q+  +L +  S   E  P ++       + +      NE    + + 
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANVVQIV--AQNEISIMVVLE 204

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           + I +      +  P  ++        S        +         +    +V++D  + 
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNRELQALLSSVSVDMIVL 264

Query: 248 LK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           L   + +LK+++ L +G  I           +  + K+ Y   +G  G   TI+I + + 
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324

Query: 306 FDQKSLKNFLH 316
            +++  K  L 
Sbjct: 325 SEKEHTKEILE 335


>gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori
           SouthAfrica7]
          Length = 354

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
 gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
          Length = 354

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + I  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335


>gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38]
 gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
 gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38]
 gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
          Length = 354

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + I  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335


>gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
 gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
 gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018]
          Length = 331

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 11/282 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L      ++  +V +   + +   +   IHS     + +   +
Sbjct: 53  RTLELIHDNYSRIMSNYL----TAQLRDNVKVKIETVEQITYEEFIHSVPNPTILTIFRM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +     +   +   ++ LLG +     +   R ++ ++K +  +    +   L  
Sbjct: 109 PPLKGSILYETNPQFIYQAIDILLGGNGAGKYKP--REITDIDKNIIMKINQGLIDNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--- 205
                    P +E          N     +E V  I  ++ + N  +   + IP  +   
Sbjct: 167 AWGEVINVEPEIESLET--NPALNQTLAPHEPVALITFSVDVGNSHTYINICIPYLSIEK 224

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           +L   ++    Q   E   ++      ++   + V +  ++   + T++D + L IG VI
Sbjct: 225 ILDKLVVQYWYQENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDFLRLSIGDVI 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +      +       Y    G +GKN  I+I D+I+ D
Sbjct: 285 TLNSKCSDPVPVYIYDNLHYLAAPGILGKNMGIKILDKIDKD 326


>gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d]
          Length = 354

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32]
          Length = 354

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          +R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKEHTKEILE 335


>gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99]
 gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 354

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDFMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKVAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
 gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
 gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20]
 gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464]
          Length = 354

 Score =  129 bits (325), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
           SSM1]
 gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
           SSM1]
          Length = 333

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 102/280 (36%), Gaps = 12/280 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +++  +       +   L  + +       DI+  S     +   + S  +   F+  S+
Sbjct: 54  RSLRNLHDKFARNFSSALSNVLRAIT----DINLVSVDQMTYGEFLMSLPDPTSFNVISM 109

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + ++V  +++ LLG + + + ++  R L+ +E+KL    I  +   L  
Sbjct: 110 IPLEGNLVLEINPSIVFPIVDKLLGGTGQPLYKI--RELTDLEQKLLDGVINLLLKELED 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   +   +     +  +       NE V  I   +     +    L  P    L+
Sbjct: 168 VWRQVIP-NVKFKKEVSENSPQVIQIVAQNEVVVLIVFEVKFGEASGLINLCFP-AITLE 225

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  +SSQ+      +     +  +       + V+++  +     T+ ++++LK G  
Sbjct: 226 PVLGKISSQDWIIGGKKGKFGNYEEQIFLLLEDIFVDVEAVLGENIFTVDEILSLKAGDT 285

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           I    +    A+L  N  + +  ELG  G    +++   I
Sbjct: 286 ILLNKKSTHPAVLILNNLKKFEVELGISGVKKAVKVKRII 325


>gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori
           Gambia94/24]
          Length = 354

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDFMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 330

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 10/266 (3%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
           ++ + L       +  +V I   S     +   I S     V +  SL+           
Sbjct: 60  VFARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFSLNPLKGTAIAQLD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  +  +++   G + E    +  R L+ +E  + ++   +I   L           P +
Sbjct: 120 SMFLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLALAWKDIVHVEPVI 177

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQNK 219
           E      YL +  +   +E V  I +   +   A     L +P   LL   +  LS Q +
Sbjct: 178 ETVETNPYLHQIFSF--SEIVALITLTTQVGESARGFINLCLPF-PLLDPVVSQLSFQRR 234

Query: 220 SENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
              Q+  + D   ++         + +       + T+ D + L+ G V+    +     
Sbjct: 235 FGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDL 294

Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301
            L       +  + G +G    ++IT
Sbjct: 295 DLYIGEHLKFKVQAGALGSKLAVQIT 320


>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 328

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 99/274 (36%), Gaps = 9/274 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L      ++ + + +   S +   +   I S     + +  SL     +  +  
Sbjct: 60  ENYARTLGTYLSGQLRVPLQVELLSVEQLTYEEFIRSIPNPTILNIFSLYPLHGSAIMEI 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           + NL    L+ LLG       +   R+L+ +E+ + +R   ++   L +   +  +  P+
Sbjct: 120 NPNLGFAFLDRLLGGPGYAPSK--ARALTEIEQTVIERLSQRMLDYLEEPWGSIIQIEPS 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-- 217
           LE         +       E +  +++   + +V     + IP   +L+  L  L+    
Sbjct: 178 LERVETNPQFTQLV--QPTEIMIIVSLETRMGDVMGMINICIPF-LVLEPILDKLNVHYY 234

Query: 218 --NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               ++ +S   I     K     + I   +     T++D++ L +G VIP         
Sbjct: 235 YSTAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDVIPLNRNISQEL 294

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +    +  +  + G       I++T  +  + +
Sbjct: 295 DIVIGNRAKFLGKPGVFANRMAIQVTGIVEEESE 328


>gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum SS14]
 gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
          Length = 344

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 107/293 (36%), Gaps = 15/293 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T+  +  +   L    L    +      V +   S     +   I S       +  +
Sbjct: 52  MRTLSLMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPSTLAVIT 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +    ++  ++++ L G + +       R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLKGNAVLEVDPSITFSIIDRLFGGTGQAAKV--QRDLTDIENSVMEGVIVRILANVR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   +  P L          +      +E V  + +   +          IP  T +
Sbjct: 166 ESWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYIT-I 222

Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  LSSQ        + +   +     K   +++++   +   + +++D++ L++G 
Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGD 282

Query: 264 VIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314
           +I           +LS   ++ + C+ G VGK    +I +RI +  Q+  +  
Sbjct: 283 IIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTSQEDFEEL 335


>gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16]
          Length = 354

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          +R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A]
          Length = 354

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          +R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGVVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKEHTKEILE 335


>gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM
 gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum]
 gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 344

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 107/293 (36%), Gaps = 15/293 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T+  +  +   L    L    +      V +   S     +   I S       +  +
Sbjct: 52  MRTLSLMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPSTLAVIT 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           +     N  +    ++  ++++ L G + +       R L+ +E  + +  I +I A + 
Sbjct: 108 MDPLKGNAVLEVDPSITFSIIDRLFGGTGQAAKV--QRDLTDIENSVMEGVIVRILANVR 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +   +  P L          +      +E V  + +   +          IP  T +
Sbjct: 166 ESWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYIT-I 222

Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  +  LSSQ        + +   +     K   +++++   +   + +++D++ L++G 
Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGD 282

Query: 264 VIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314
           +I           +LS   ++ + C+ G VGK    +I +RI +  Q+  +  
Sbjct: 283 IIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTSQEDFEEL 335


>gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83]
          Length = 354

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          +R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|85058024|ref|YP_453726.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
 gi|84778544|dbj|BAE73321.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
          Length = 340

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 101/309 (32%), Gaps = 12/309 (3%)

Query: 7   HKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
              T    P   A+   + G++ K +E I+      ++  L  + + +     DIS  + 
Sbjct: 36  SPKTGSGSPFDAAQRRRQGGERLKGLEMINQDFAGRFRSALFILMQRRT----DISAEAI 91

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
               +       +     +   L     N     +  L+ T L+ L G S    P    R
Sbjct: 92  LIQPYREFAAQLRPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRL-PDAQER 150

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
           + +  E+++  R +  +               P   +F   +   + T     E V    
Sbjct: 151 AFTPAEQRVIDRLLKLMLQAYGDAWLGLHPLEP---EFITAETSCRFTGFSDGEMVVISP 207

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDT 244
             + I  +   F ++  Q  L     I      +   Q +       AR+     + +  
Sbjct: 208 FRVAIGAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVA 267

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           R       L  V+ L+ G ++P    ++  A +  +G  ++    G +   Y +R+   I
Sbjct: 268 RFADLPLCLSRVMELRRGDILPIPRPDRLTACV--DGVPVFLGNYGSLNGRYALRVEHVI 325

Query: 305 NFDQKSLKN 313
           N     L N
Sbjct: 326 NQGIDQLNN 334


>gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52]
 gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57]
          Length = 354

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          +R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|242281039|ref|YP_002993168.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM
           2638]
 gi|242123933|gb|ACS81629.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM
           2638]
          Length = 326

 Score =  128 bits (323), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 6/268 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M   VDI+  S    KF   + S       S   +     N  +   
Sbjct: 60  RFARLATNNLANTMRKRVDINPISIDMSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+E+  G S  + P++  R  + +E+ +  R +    + L        E    L
Sbjct: 120 SRLVFALVESFFGGSG-SQPKVEGRDFTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            ++ V  I   + +EN   S ++ +P  T L+     L +  +S
Sbjct: 179 VRSEVNPQFAAIV--PPSDVVVVITFEVELENAIGSLIVCLPYST-LEPIRSKLHASFQS 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   +  F  +  +  V++  R+   K T + ++ L+ G ++     E+      
Sbjct: 236 ERLEIDHVWVSRFKERLLETPVDLLVRLGKTKITGRQLLNLEEGDLLLLDTDEEDMLECE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306
             G   Y    GRV  N   +I   I  
Sbjct: 296 VGGVLKYLGSPGRVKANRAFQIAQAIEP 323


>gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
 gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
 gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30]
          Length = 354

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 57  RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          +R  S +E  L    + Q+  +L +  S   E
Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P ++       + +      NE    + + + I +      +  P  ++        S
Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273
                   +         +     V++D  + L   + +LK+++ L +G  I        
Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
              +  + K+ Y   +G  G   TI+I + +  +++  K  L 
Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335


>gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
           2379]
 gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
           2379]
          Length = 325

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 101/256 (39%), Gaps = 7/256 (2%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
               ++   V+I     +S KF   I +       +   +        I   + LV++L+
Sbjct: 67  SLSNRLRKVVEIKKIGARSYKFDDFIQTLPSPVCMAIFKIEPLKGAALISFDSTLVLSLV 126

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           ++LLG +  +   + NR  +++E +L ++ +A I   L +  +    +  NL     ++ 
Sbjct: 127 DSLLGGTGTSKVSMANRMFTSIELRLVEKIVADILQDLEKAWAPLYATHMNLLR---MEM 183

Query: 169 LKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSE 225
             +  N +  E+ + T+++ + IE+++ + V  +P  T ++     L +  + +      
Sbjct: 184 NPRLINIVPPEYQIVTMSLKIQIEDISGNMVFAVPYMT-IEPIRDKLKAGMQFDLMAIDP 242

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
                 +    +  + I   +     TL +++ L  G  I       +  ++   G   Y
Sbjct: 243 QWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDKPCSSELLVKVEGTTKY 302

Query: 286 SCELGRVGKNYTIRIT 301
               G    N  I+IT
Sbjct: 303 FAIPGIRHGNRAIQIT 318


>gi|332702324|ref|ZP_08422412.1| flagellar motor switch protein FliM [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552473|gb|EGJ49517.1| flagellar motor switch protein FliM [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 325

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 6/262 (2%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + +         M   VD++  S    KF   + S       +   +     N      
Sbjct: 60  RFARLATNALANAMRKRVDVNPISIDMSKFGDFMRSLPVPTSINIFKMEPLRGNALCVVD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           + LV  L+EN  G S  T P++  R  + +E+ +  + +      + +  +   E    L
Sbjct: 120 SRLVFALVENFFGGSG-TQPKVEGRDFTHIEQAIIGKVVDLALTNMEEAWAPVHEVHIEL 178

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                            +E V  +   + +EN   SF++ +P  T ++     L +  +S
Sbjct: 179 IRAEINPQFAAIV--PPSEVVVVVTYEVELENAIGSFIVCLPYAT-IEPIRAKLYASFQS 235

Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E    D   I  F  +  +  V +  R+     T + ++ + IG ++          +  
Sbjct: 236 ERLEVDHAWISRFKERLMETPVEMVVRMGKTSITGRQLLNMDIGDILLLDTDVDDLLVAE 295

Query: 279 ANGKEIYSCELGRVGKNYTIRI 300
            +G   +    GRV  N   ++
Sbjct: 296 VDGVRKFHGIPGRVKGNRAFQV 317


>gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           RM3195]
 gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           JV21]
 gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           RM3195]
 gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
           JV21]
          Length = 360

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI+ I   L       L       M   V+    S     +   + S      F+  S+
Sbjct: 55  RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                N  +  + ++   +++ LLG   ++     +R L+ +E  L    +  I   L +
Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             ST  E  P++E       + +  +   NE +  + M + I N +    +  P    L+
Sbjct: 169 SWSTVTEIYPSIEAKESSPNVVQIVS--QNEIIIMVVMEIIIGNSSGMVNICYPV-VHLE 225

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + L  L++++      +  +           +  V  +  +      + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVNEFLELKQGDIL 285

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
                    A++S + K+++  ++G      +I+I + I  D+  +K  L K
Sbjct: 286 RLDREADDKAVVSIDKKDVFLAQIGLHRFRKSIKIIELIRTDKDEIKEILEK 337


>gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
 gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
          Length = 330

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 104/285 (36%), Gaps = 14/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +  + I  +       +L    +   +    I+  S     +   I S       +  S 
Sbjct: 52  RVFDMIHENFARSISTYLSGRVRTFTN----INLASIDQISYEEFIRSLPAPSFITVFSA 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +  +  +  +  T+L+ +LG           R+ S +E  + ++ +  I   L+Q
Sbjct: 108 PEFVGSAILEMNLEIFYTILDLILGGPG---IPNVKRTPSDIELSIMRKEVMNILTNLSQ 164

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   +  P +E   +    +       NE +  +++ +TI        +  P  +L +
Sbjct: 165 AWSEVYQFVPTIESVEN--NPQFVQIAPPNEMILLVSLYVTIAKTEGFLNICWP-SSLTE 221

Query: 209 TTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  LSS+       E  SE +++   +    + + I   +     ++K+++ L++G V
Sbjct: 222 PFMDKLSSRTWFTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDV 281

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I     +    ++    K  +    G    +  +++T  +  + +
Sbjct: 282 IRLQTHKDDDVMVEVQSKPKFMARPGVFKGHRAVKVTRILKPEVE 326


>gi|255022053|ref|ZP_05294059.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
 gi|254968539|gb|EET26095.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
           51756]
          Length = 366

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 97/313 (30%), Gaps = 14/313 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      PL  +   R+       ++       L   + +         + ++ DI   S
Sbjct: 55  SSGPTIVPLDLLNQDRM------NRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLS 108

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q  K+   I        F   SL+    +        L   ++E   G +    P+L  
Sbjct: 109 AQIQKYGEYIGKIALPSYFVMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEG 168

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  S +E+++  + I               +  P +             +  S E V   
Sbjct: 169 RDFSVIEQRVFNKIIDHAVEDFTSAWEPIIKLRPKVLRSDVKSQFVSIAS--STEGVVGS 226

Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
              + +E  +      IP  T+  L+  L+S  + ++SE                  V++
Sbjct: 227 VFEIEMERWSGKLYTCIPYNTVEPLREQLVSGVAADQSE-MDPSWKQMLHMDIQNAMVDV 285

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR-IT 301
              +  +   L    TL+ G V+ F   +     +      I     G     Y ++ ++
Sbjct: 286 SVILASQDIPLSRARTLQKGDVLSFDRVQDARVYV--EDILIGEGRYGAFKNQYAVKLVS 343

Query: 302 DRINFDQKSLKNF 314
            R   ++  L++ 
Sbjct: 344 YRTPSEEDVLQSI 356


>gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 293

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 6/261 (2%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + + L       +   + ++  S +   ++  +             LS +  N  +  + 
Sbjct: 11  FVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPYDGNGVLELNP 70

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  +LE LLG + ++   +  R ++ +E++L       I   L +           +E
Sbjct: 71  SLVFPILEMLLGGTGKSSATIQ-RDITEIEQRLLDGLFRIILQDLREAWKAVTNVDFTIE 129

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                  L        NE V +I + + I        + +P   ++K        Q    
Sbjct: 130 SMETEPQLLHLL--APNEAVVSIGIEVRIGETVGMMNIAMP-SIVIKMMRQKFDQQWSVR 186

Query: 222 NQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                  + F   R   Q  + ++  +     ++ D+++L+ G ++ F    +    L  
Sbjct: 187 KTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFPVERPIELVV 246

Query: 280 NGKEIYSCELGRVGKNYTIRI 300
           NG   ++ ++   G+    +I
Sbjct: 247 NGACKFTGQVVSTGRKRACQI 267


>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 308

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 96/279 (34%), Gaps = 12/279 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  +  +L       L       +   V I+  S     FS          +     L
Sbjct: 38  RTLVLVHENLAR----LLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRL 93

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +       +  S+N+   ++E + G     +     R L+ +E  + +R +      + +
Sbjct: 94  NPLPGMCLLEISHNIAFAIVERVFGGPGSDLQ--PQRELTEIELGIIQRVVRDTFGPMKE 151

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P +E         +  N    E V  I + + I           P  T+ +
Sbjct: 152 AWRNVAEIDPAIEAVETNPVFIQIEN--PTEVVAAITLAVEIGEHLGHMTFAFPYSTV-E 208

Query: 209 TTLISLSSQNK---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             L  LS Q+    ++++S    +   R   +  + +   +   +  L + + L++G VI
Sbjct: 209 PVLSRLSPQSWLAETKHKSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVI 268

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
               R      +    K  +  + G VG+   ++IT R+
Sbjct: 269 RLDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRV 307


>gi|325295396|ref|YP_004281910.1| flagellar motor switch protein FliM [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065844|gb|ADY73851.1| flagellar motor switch protein FliM [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 348

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 4/250 (1%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           ++  S    +F++ +        +S  S+     NF +   + LV  ++  + G      
Sbjct: 74  VTKESVYITRFNNFMSKIPLPASYSIVSMKPLKDNFLLVLDSRLVFVVISVMFGG-PAQP 132

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  + +E ++    +    +               L+       L +  +     
Sbjct: 133 FKIEGREFTKLETRIIDDIVKISLSTFQHTWKDVYPVEFELKSIELNPALARIVSGNDRV 192

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
            V    M   ++   + F    PQ   L      + S+     +         +K  +  
Sbjct: 193 IVVECTM--DVDGYEAPFFFCFPQGMFL-PIKELIFSEAVFAEKDPVWEKHLTKKLLKTE 249

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +  K   L+++++ K G  I     +     L    K  +  +LG++   Y   
Sbjct: 250 LKLTLELTRKNFFLRELLSWKEGDEILLDISKDEFVKLYVEDKPKFWAKLGKIKDKYAAL 309

Query: 300 ITDRINFDQK 309
           + D IN +  
Sbjct: 310 VVDMINGENN 319


>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
 gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
           743B]
          Length = 331

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 100/274 (36%), Gaps = 11/274 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+E I  +   +   +L    +     +V +   S +   +   IHS +   + +   +
Sbjct: 53  RTLELIHDNYARIISSYLTAQVRS----NVKVKIESVEQTTYEEFIHSIQNPTILTVFKM 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
              + N     +   V  +++ LLG + E   +  NR  + ++K +  R    + + L  
Sbjct: 109 PPLAGNILFETNPQFVYQIIDILLGGTGE--GKYKNREFTDIDKNIITRINEGLISNLKL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206
             S   E +P +E          N     +E V  I   + I    +   + IP   +  
Sbjct: 167 AWSEVLEVNPEIETIET--NPALNQTLAPHEPVALIIFTIEIGESRTYINICIPFICIEK 224

Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
            L    I     + S+ + E   +    K   + +  +  +     T++D + L +G V+
Sbjct: 225 YLDHLEIKHWYHDSSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDVV 284

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
               + +    +    +  +  + G +GK   ++
Sbjct: 285 TLERKFEDPLEVVIEERPHFLAKPGIIGKKTGVQ 318


>gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
 gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
          Length = 329

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 104/286 (36%), Gaps = 10/286 (3%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
           K  I  +S  +   Y + L      K+   V I   S +   +   + S       +   
Sbjct: 49  KDQIRNLSR-IHENYARLLTTNLSAKLRSLVQIQVASVEQVPYEEYVRSIPTMTFLNVIE 107

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
               +    I  + N+   + + +LG    +  ++ N  L+ +E K+       + A   
Sbjct: 108 PIPLNGRVLIEINPNIAYAMFDRVLGGHGMSFNKIDN--LTEIETKILSGLFESMLASFA 165

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +  +T  E  P  E+     +  +  +   NE V  I+++ +I N      + +P   +L
Sbjct: 166 EAWTTVIEMEPITENIEVNPHFLQLVS--PNETVVVISLSTSIANTTGLMTICLPH-VVL 222

Query: 208 KTTLISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +  L  L+S +  + Q    S +      ++  Q  + +   +     T+++ + L  G 
Sbjct: 223 EEILPKLTSHHWFQEQRGALSTEDQALLNKQVRQTTLEVAAELGRSTITIEEFLRLGKGD 282

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+           +   G++ +S + G       +++TD +     
Sbjct: 283 VVALNQLIDEPLDVLVGGEKKFSGQPGVKRDRMALQVTDVLGGTDD 328


>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 332

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 97/283 (34%), Gaps = 18/283 (6%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ +      +   FL    +      + +   S     F   + S     V +  +L
Sbjct: 53  RTLQTVHEGYARILSNFLSGYLRS----TIVVRVASVDQFTFDDFVRSVPIPTVLTIITL 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  +   +  +++ L G   E   ++  R L+ +E  + ++   ++      
Sbjct: 109 KPLKGMAVMETNPQFLFPIIDLLFGGPGEPPKRV--RELTDIELSVVRKLNKKLLENFQL 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                    P +E       L +  +      V T+   +          + +P   +L 
Sbjct: 167 AWQDIYRMEPEIESVETNPRLHQIISPSEIVAVITLTAVVGATAR-GLINICLPH-IMLD 224

Query: 209 TTLISLSS-------QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
             L+ LSS           +      ++ +     +  V +   +   + T++D++ L++
Sbjct: 225 PVLMHLSSFYRHVHGALVPDGTEGKRMEYW---IERAPVELSAVVGESEITVQDLLQLQV 281

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           G V+P   R      L  + +  +  + G +G+   +++T  +
Sbjct: 282 GDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLGRYLAVQVTSLV 324


>gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
           Ab9]
 gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
           Ab9]
 gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 332

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 97/270 (35%), Gaps = 8/270 (2%)

Query: 43  KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
            + L       +   V+++  S     +    +S       +    +     F +  +NN
Sbjct: 65  TRSLTSFLSGYLRTVVNVTVISVDQLTYYEFSNSLNNPVFIAIIDAAPLEGPFLLEFNNN 124

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
               +L+ +LG   +   +L +R  + +E  L  + + Q+  +  +      + +P+L  
Sbjct: 125 TTYAILDRILGGIGK--GELVDRDYTEIEISLLTKIVKQMLPLFKEPWGNIVDINPSLVR 182

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222
                   +  +   NE V    +++ I          +P  T L+  +  L+++    +
Sbjct: 183 VETNSQFAQIIS--PNETVALCTLSLKINETEGMMNFCMPHLT-LEPIVPKLTTKFWFSS 239

Query: 223 QSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
             ++     +    K  +  + +  ++     T+K+ +  +IG +I      K    +  
Sbjct: 240 LKKEGRVSPELIKSKISKTYIPLTAQLGSTTITVKEFLNFEIGDIILLDKNFKDPVDIII 299

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           +    +    G     Y+++IT+ I    +
Sbjct: 300 DKNVKFRGIPGIRNNKYSVKITEVIYKGDE 329


>gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
          Length = 322

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 14/253 (5%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           +IS +  ++ K S  +         +  ++ + +   ++     L+ T++  + G     
Sbjct: 75  NISLSEIKTEKISDFVLKIPLPAAIAVLNVEALNGRLYMVLDTRLIYTIISIIFGG-PAQ 133

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-- 176
             ++  +S +  E+K+    +  +   LN             E       ++ N  RL  
Sbjct: 134 PYKVEGKSFTKFEQKIINNLVEVLVRHLNTAW-----VELIREGEVQFVGIEDNPRRLIT 188

Query: 177 --SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
              NE V  I + + IE       L IP +T+     I       ++ +S D  D     
Sbjct: 189 ISRNEIVIVITLEVEIEGFKGYVYLAIPMKTIDPIKDIL----RTADTESGDFRDVILSN 244

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V ++  +      + +++ +K G  IP   R      +   G  ++   LG    
Sbjct: 245 LMGTPVLLEAILPTLVMNVHELLEMKEGDFIPLDPRATDSITVKVAGVPMFKGILGESAG 304

Query: 295 NYTIRITDRINFD 307
              ++I   +   
Sbjct: 305 RKAVKIKSFVELP 317


>gi|91792691|ref|YP_562342.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91714693|gb|ABE54619.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 181

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 164 YDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
            + DYL    N          E V   + ++ ++     F + +P   +++     L + 
Sbjct: 11  VEFDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIRELLDAG 69

Query: 218 NKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            +S+ Q  D         +   + V  D  I   + TL+DV+ L+ G +IP    E    
Sbjct: 70  VQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIELPEH--I 127

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           ++       Y C++G+   +  ++I+++I   +      
Sbjct: 128 MMRIEDLPTYRCKMGKSRDHLALKISEKIARPETVKTEL 166


>gi|85060031|ref|YP_455733.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
 gi|84780551|dbj|BAE75328.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
           'morsitans']
          Length = 317

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 88/288 (30%), Gaps = 13/288 (4%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S      P  P +  R+  +      I      +   + +         +    DI+  +
Sbjct: 28  SAEPEIKPYDPYIQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 81

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            Q   +     +       +   L           S  LV    +NL G       ++  
Sbjct: 82  IQIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPILVFIAADNLFGGDGRFPIRMEG 141

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++ +R +        +      + +       ++     N     N+ + T 
Sbjct: 142 REFTHTEQRIIRRMLRLALEGYQEAWQAIYQLTIEYVH-AEMQVKLTNITSSPNDIMVTT 200

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
             ++ I ++   F + IP   +++     L++      + +   +   R+     + +  
Sbjct: 201 PFHVEIGSLIGEFYICIPFS-MIEPLRELLAN---PPLEDQSWRENLVRQIQHSELELVA 256

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                   L +++ L    V+     E   A +  +G  + +  + ++
Sbjct: 257 NFTDVSLQLSEILKLAPADVLNIEKPEHITAYV--DGVPVLTGHVDQL 302


>gi|254497501|ref|ZP_05110294.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12]
 gi|254353316|gb|EET12058.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12]
          Length = 358

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 84/266 (31%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +       +    D +I+       K    + S     + S            I   
Sbjct: 96  RAVRSFATDIYQLTAKDFEITQDQMLIIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFD 155

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  V  L++   G S + + Q      +  E ++ +    ++ A L            ++
Sbjct: 156 STFVYDLVDYYFGGSTQFLAQKDRTDFTATELRVMEAVTTKLIANLTLAWKPI--IQLDI 213

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNK 219
             F D    +       +E +  +  ++        F  I+P   +      + L +   
Sbjct: 214 SKFNDETNPQLVNIAEPDEMLLVVRFSLDFGKETGDFYFILPYTMVEPIKEQLELGASRP 273

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +    + +     +   + + I + +   K+TL  V++ + G  IP   +E     L  
Sbjct: 274 DDEIDPNWVKSLKEELMDVELVISSAMAQTKSTLGTVMSWQAGDFIPMEMKE--IVTLDV 331

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
            G   Y+  LG   +   ++I   I+
Sbjct: 332 EGTPGYTATLGTANEKRALKIIKNIS 357


>gi|313681608|ref|YP_004059346.1| flagellar motor switch protein flim [Sulfuricurvum kujiense DSM
           16994]
 gi|313154468|gb|ADR33146.1| flagellar motor switch protein FliM [Sulfuricurvum kujiense DSM
           16994]
          Length = 364

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 106/286 (37%), Gaps = 8/286 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +    +     + +       M   V+I   S     +   + S      F+  S+    
Sbjct: 55  RAFRGIHDKMARSIASQISAIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLE 114

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            N  +  + ++   +L+ +LG   E  P   NR  S +E  L +  +  +   L +    
Sbjct: 115 GNGVLEINPSIAFPMLDRILGGKGE--PFEANREFSDIELSLFETILRVMMGTLREAWGP 172

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
             +  P +E       + +      NE V  + M + I + +    +  P    L+  L 
Sbjct: 173 VTDLYPQVESKESSPNVVQIV--AQNEIVVMVVMEIIIGHSSGMMNICYPVIA-LEPVLP 229

Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L+S++      +  +             +VN++  +   + +L +++ L  G +I    
Sbjct: 230 KLASRDLMLNETSSKKSRNQELQVLLGGAHVNVEVNLGEAELSLHELLELGEGDIIRLNI 289

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
                  +S +GK+ +  ++G      +I+IT  I+ ++ ++K  L
Sbjct: 290 PADDVVNVSVDGKDRFVGQMGLRRFRKSIQITSLIDTEKDAVKRAL 335


>gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
           HB-1]
 gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
           HB-1]
          Length = 347

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 88/246 (35%), Gaps = 4/246 (1%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +S  S    +F++ +        ++  S+  +  NF     + LV  ++  + G      
Sbjct: 72  VSKESVYITRFNNFLAKIPMPASYTIVSMKPFKENFLFVLDSRLVFVVISVMFGG-PAKP 130

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  + +E ++ +  +        Q        +  ++       L +  +   NE
Sbjct: 131 FKIEGREFTKLEMRIIQDIVKIALEDFEQVWKEVYPITVEMKSIELNPALARIVS--GNE 188

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
            V  +  +M IE   + F    P   +       + S++    +    I     K  + N
Sbjct: 189 KVIVVECSMDIEGYEAPFFFCFPYG-MFMPIKDLIFSESLFAEKDPVWIRHLGEKLLKTN 247

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +  KK ++K+V++ K G  +     +     L       +  +LG+V   Y   
Sbjct: 248 LRVWLELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYVEESPKFYAKLGKVKDRYAAL 307

Query: 300 ITDRIN 305
           + D IN
Sbjct: 308 VYDFIN 313


>gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a]
          Length = 319

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 106/281 (37%), Gaps = 14/281 (4%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--- 88
            KI   +   Y + L       + L   +S  S +  K+    ++  +  +     L   
Sbjct: 39  IKILERIFENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIE 98

Query: 89  --SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                 SN  +  SN+L  T+++ +LG       Q  +R  + +E  + +  + + ++++
Sbjct: 99  DDDIEESNAVLQLSNSLTFTMIDRMLGGRGTY--QDTDRDFTEIEINVMRGIVERFTSLM 156

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           +Q      +++P LE       +    +  ++E +  + M +T+ +  S     +   T+
Sbjct: 157 SQAWDGYVDTNPKLESIETNSRVISAAD--ADETMIIVAMEVTVNDSKSIVSFCMSAITM 214

Query: 207 ---LKTTLISLSSQNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
              +K      SS  +  S  +  +  +       Q  + +   ++    TL+DV+ L++
Sbjct: 215 DQIMKKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQV 274

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +IP          L       +  +LG +      RI +
Sbjct: 275 NDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDN 315


>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 332

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 104/275 (37%), Gaps = 7/275 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            ++   + + L       M   ++    S +   +     S     +    S+     N 
Sbjct: 55  RNIHENFCRNLVTYLAGAMHTVIEAKVLSTEQVTYDEYTRSLPYPSILGIYSMDPLEGNA 114

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I  S  L   +++ LLG   +   +  NR L+ +E+++ +  + ++ +V+ +  S    
Sbjct: 115 LIELSPGLGFHMVDRLLGGYGKDAMK--NRDLTEIERRIVQGMLRKMISVIGEAWSEIYT 172

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLI 212
            +P   D      ++       NE V  + M + IE+      + +P    + +L     
Sbjct: 173 ITPQYVDMET--NVQFIQIVAPNEMVVVVTMEVKIEDSIGMINICLPYIVMKPILDKLNN 230

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            L   +  + Q+ +      RK  ++ V +   +   + T+++++ L+ G VIP     +
Sbjct: 231 ILLFSSAGKAQNPEDQRTIRRKIERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQ 290

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +     + ++   G       ++I+  +N +
Sbjct: 291 EPLDIYVGKFKKFAGIPGLHSNRLAVQISGVLNEE 325


>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
           27405]
 gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           2360]
 gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
 gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
           1313]
          Length = 328

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 13/285 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  I  +   +   FL    +      V +   S +   +    +S     V +    
Sbjct: 53  RTLNVIHDNYARIITNFLSGYLRTL----VQVEVISVEPIAYYEFNNSISNPAVLAVIDF 108

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           +  + +  +  +  +   L++ +LG     I ++  R  + VE  + +R I Q+  ++ +
Sbjct: 109 APLTGSIILEMAPPVAYALIDRILGGKGLPIERV--REFTEVEIAIIERIIIQLVNLMRE 166

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 E  P LE         +  +  +NE V  I +   I  V     L IP   +++
Sbjct: 167 PWENVVELKPRLEKIETNAQFAQIVS--ANETVALITLGAKIGEVEGMINLCIPH-IVVE 223

Query: 209 TTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             +  L+++    +  ++      +   +K     V +   +      + D + L+ G V
Sbjct: 224 PIVSKLNTKFWFSSVEKEATKEDKETIQKKIEYTKVPVRAILGRATIQVADFLELQPGDV 283

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I           +       +    G       I+IT+ I  + +
Sbjct: 284 ITLDSNVNGNLDVLVGDLLKFRGSPGVKKNRNAIKITEVIRREDE 328


>gi|54297705|ref|YP_124074.1| flagellar motor switch protein FliM [Legionella pneumophila str.
           Paris]
 gi|53751490|emb|CAH12908.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Paris]
          Length = 353

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 78/266 (29%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +            D +I        K    + S     +              I   
Sbjct: 91  RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNPSLIGIYKFKPLRGKGIILFD 150

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  V  L++   G + +   Q      +  E ++ +    ++ A L            ++
Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVANLIHAWEPI--IQLDI 208

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219
             F D    +        E +      +       SF  I+P   L      + L +   
Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGSFYFILPYSMLEPIKQQLELGASRP 268

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +    + I+    +   + +++   +    +TL  V++ K+G  +P    E+    L  
Sbjct: 269 DDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSWKVGDFVPLEINEE--VTLDI 326

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
            G   ++  LG   +   ++I   I 
Sbjct: 327 EGTPSFTATLGSTNEKRALKIIKIIR 352


>gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
 gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
          Length = 331

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 106/281 (37%), Gaps = 14/281 (4%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--- 88
            KI   +   Y + L       + L   +S  S +  K+    ++  +  +     L   
Sbjct: 51  IKILERIFENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIE 110

Query: 89  --SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                 SN  +  SN+L  T+++ +LG       Q  +R  + +E  + +  + + ++++
Sbjct: 111 DDDIEESNAILQLSNSLTFTMIDRMLGGRGTY--QDTDRDFTEIEINVMRGIVERFTSLM 168

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           +Q      +++P LE       +    +  ++E +  + M +T+ +  S     +   T+
Sbjct: 169 SQAWDGYVDTNPKLESIETNSRVISAAD--ADETMIIVAMEVTVNDSKSIVSFCMSAITM 226

Query: 207 ---LKTTLISLSSQNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
              +K      SS  +  S  +  +  +       Q  + +   ++    TL+DV+ L++
Sbjct: 227 DQIMKKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQV 286

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +IP          L       +  +LG +      RI +
Sbjct: 287 NDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDN 327


>gi|54294679|ref|YP_127094.1| flagellar motor switch protein FliM [Legionella pneumophila str.
           Lens]
 gi|53754511|emb|CAH15995.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Lens]
          Length = 353

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 75/266 (28%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +            D +I        K    + S     +              I   
Sbjct: 91  RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFD 150

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  V  L++   G + +   Q      +  E ++ +    ++   L            ++
Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLTHAWEPI--IQLDV 208

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219
             F D    +        E +      +       +F  I+P   L      + L +   
Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFLLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 268

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +    + I+    +   + + +   +    +TL  V+  K+G  +P    E+    L  
Sbjct: 269 DDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEE--VTLDI 326

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
            G   ++  LG   +   ++I   I 
Sbjct: 327 EGTPSFTATLGSANEKRALKIIKIIR 352


>gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
 gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
          Length = 428

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 89/287 (31%), Gaps = 12/287 (4%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83
                + +  +  S+   +   +  + +      +++   S     +S  + S      F
Sbjct: 88  GKDQMRAMHSLHESIARNFGASISGLLRTM----IEVKLLSVDQLTYSEFVFSLDNPSCF 143

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +         ++ +  +  L   +++ +LG       +   R L+ +E +L  R +    
Sbjct: 144 NVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGDP-VPGETIRRPLTEIETRLMCRVVELFL 202

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             +        +  P++        L +      NE    +   + +        L IP 
Sbjct: 203 EQIVPAWENVIQLEPSIHTTESNPQLAQIV--PPNEVAILVGFEVLLGKNRGMMNLCIPF 260

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLK--DVVTL 259
            ++ K     LS          +      RK         +D  + L ++ ++  D++ L
Sbjct: 261 NSIEKYN-AKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDL 319

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +G +I       +   LS      ++   G       +++   +  
Sbjct: 320 NVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEP 366


>gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 330

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 84/269 (31%), Gaps = 3/269 (1%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           ++   + + +       +   +D++    +  +F   + +           ++ +  +  
Sbjct: 58  AISDAFMRSMRNSLASALRRILDVTAVPMELERFGAFVRTLPVPSSLQIFKMAPFRGHAL 117

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           I     LV  L+E+ LG S     ++  R  + +E++L +R +  +   + +   + Q  
Sbjct: 118 IVLEPRLVFNLVESFLGGSGSRNVRIEGRDFTAIEQRLIRRVVNLLLTDMEKAWYSLQPL 177

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLS 215
                         K       + V      + ++    S    IP   L      +  +
Sbjct: 178 KVQYVRSEINPQFAKIC--QPEDVVIINRYEVDMDRAVGSITTCIPMSNLESVRNRLMTT 235

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            Q +   +   +            V     +       ++++ L++G  +    R     
Sbjct: 236 FQREQSEEDIAIQRTITENIKNAEVEFKVELGRTTVPAREIINLQVGDTLTLDRRTDEQL 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +    K  Y    G   KN  + I  ++
Sbjct: 296 PVFVASKRKYMATPGVHRKNNAVLIKKKV 324


>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
 gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC30]
 gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC10]
 gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
           EC20]
          Length = 332

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 12/278 (4%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + K    +   ++  +V +   + +   +   IHS  +  +         S    I  + 
Sbjct: 58  FSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPKFTLLGLFHSQPLSGIQMIEMNP 117

Query: 102 NLVITLLENLLGASHETIPQLYN------RSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            L + L+E L G       +         +S + +E  + +  +AQ   V          
Sbjct: 118 QLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETAILEEVVAQFVRVYQNVWKDIVA 177

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
               L+       L +  N   NE V  +   + I  V     L IP     +  +  LS
Sbjct: 178 LDSVLDGIDTNPQLMQ--NMSPNEPVVLVTFTIKIFEVKHFINLCIPY-VFFEGIIDKLS 234

Query: 216 SQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            +N  ++    ++D      +    + +N++  +   + +L + + L+ G VI    +  
Sbjct: 235 FRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKIT 294

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                  +GK  +  + G+      I + D++  +Q+ 
Sbjct: 295 EPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 332


>gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3]
          Length = 319

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 105/281 (37%), Gaps = 14/281 (4%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--- 88
            KI   +   Y + L       + L   +S  S +  K+    ++  +  +     L   
Sbjct: 39  IKILERIFENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIE 98

Query: 89  --SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                 SN  +  SN+L  T+++ +LG       Q  +R  + +E  + +  + + ++++
Sbjct: 99  DDDIEESNAILQLSNSLTFTMIDRMLGGRGTY--QDTDRDFTEIEINVMRSIVERFTSIM 156

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
           +Q      ++ P LE       +    +  ++E +  + M +T+ +  S     +   T+
Sbjct: 157 SQAWDGYVDTKPKLESIETNSRVISAAD--ADETMIIVAMEVTVNDSKSIVSFCMSAITM 214

Query: 207 ---LKTTLISLSSQNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
              +K      SS  +  S  +  +  +       Q  + +   ++    TL+DV+ L++
Sbjct: 215 DQIMKKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTVLTLRDVLNLQV 274

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
             +IP          L       +  +LG +      RI +
Sbjct: 275 NDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDN 315


>gi|148359336|ref|YP_001250543.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Corby]
 gi|148281109|gb|ABQ55197.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
           Corby]
          Length = 353

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +            D +I        K    + S     +              I   
Sbjct: 91  RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNPSLIGIYKFKPLRGKGIILFD 150

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  V  L++   G + +   Q      +  E ++ +    ++ A L            ++
Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVANLIHAWEPI--IQLDV 208

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219
             F D    +        E +      +       +F  I+P   L      + L +   
Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 268

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +    + I+    +   + +++   +    +TL  V++ K+G  +P    E+    L  
Sbjct: 269 DDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSWKVGDFVPLEINEE--VTLDI 326

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
            G   ++  LG   +   ++I   I 
Sbjct: 327 EGTPSFTATLGSTNEKRALKIIKIIR 352


>gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47]
          Length = 428

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 89/287 (31%), Gaps = 12/287 (4%)

Query: 24  KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83
                + +  +  S+   +   +  + +      +++   S     +S  + S      F
Sbjct: 88  GKDQMRAMHSLHESIARNFGASISGLLRTM----IEVKLLSVDQLTYSEFVFSLDNPSCF 143

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +         ++ +  +  L   +++ +LG       +   R L+ +E +L  R +    
Sbjct: 144 NVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGDP-VPGETIRRPLTEIETRLMCRVVELFL 202

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             +        +  P++        L +      NE    +   + +        L IP 
Sbjct: 203 EQIVPAWENVIQLEPSIHTTESNPQLAQIV--PPNEVAILVGFEVLLGKNRGMMNLCIPF 260

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLK--DVVTL 259
            ++ K     LS          +      RK         +D  + L ++ ++  D++ L
Sbjct: 261 NSIEKYN-AKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDL 319

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +G +I       +   LS      ++   G       +++   +  
Sbjct: 320 NVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEP 366


>gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2]
 gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2]
          Length = 326

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 88/267 (32%), Gaps = 5/267 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
               + +       +  +VD++     + KF+  + S           +     +  +  
Sbjct: 60  ERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPVPTSLHVFRMEPLRGHGLVVL 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + LV  L++   G       ++  R  + +E+ + K+ +      + +     +    +
Sbjct: 120 ESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVVVACLKDIEKAWLPIEPVKTS 179

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L               L  + V      + +E  A + VL +P   +++     L+S  +
Sbjct: 180 LIRSEMNPQFAAIV--LPTDLVIVTRFEIELEQAAGNLVLCLPYA-MIEPLRAKLASGFQ 236

Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +E +  D            +  VN+  ++   + + + ++ L+ G VI   +  K     
Sbjct: 237 AETEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTG 296

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304
             +G        G        R+  ++
Sbjct: 297 YVDGLPKVRGFAGVQRGFQAFRVEKKL 323


>gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
 gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens
           GS-15]
          Length = 327

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 100/266 (37%), Gaps = 8/266 (3%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
                ++   V+I      S KF   +H+       +            I   + LV T+
Sbjct: 65  GTLSNRLGRIVEIKKVGAASFKFDDFLHTMPSPVAMAVYKADPLKGAALIAFDSTLVFTI 124

Query: 108 LENLLGASHET-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           ++ +LG +  + +P + NR  +++E +L ++ +  + A L +  +    +         +
Sbjct: 125 VDCILGGTGSSVVPTVGNRMFTSIELRLVQKIVMDVLADLEKAWAPIYATKMGFLR---M 181

Query: 167 DYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
           +   +  N +  E+ V T+ M + IE +    +  +P  T +      L +  + +  + 
Sbjct: 182 EMNPRLVNIVPPEYQVVTMEMEIQIEEIIGKMIFAVPLTT-IDPVREKLKNGAQVDMMAI 240

Query: 226 DLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           D    F   ++  +  +++   +     ++ +++ L  G  I       +  ++   G  
Sbjct: 241 DPQWSFRLSKELLEAPLDLSVEVGGAIISMDELLNLTPGDTIMLDTPCNSDLVVKVGGVS 300

Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309
            +    G    N   +IT  I   ++
Sbjct: 301 KFMSAPGLRHGNKAAQITTIIGKGRE 326


>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
           ATCC 12755]
          Length = 336

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 12/278 (4%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + K    +   ++  +V +   + +   +   IHS  +  +         S    I  + 
Sbjct: 62  FSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPKFTLLGLFHSQPLSGIQMIEMNP 121

Query: 102 NLVITLLENLLGASHETIPQLYN------RSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            L + L+E L G       +         +S + +E  + +  +AQ   V          
Sbjct: 122 QLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETAILEEVVAQFVRVYQNVWKDIVA 181

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
               L+       L +  N   NE V  +   + I  V     L IP     +  +  LS
Sbjct: 182 LDSVLDGIDTNPQLMQ--NMSPNEPVVLVTFTIKIFEVKHFINLCIPY-VFFEGIIDKLS 238

Query: 216 SQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            +N  ++    ++D      +    + +N++  +   + +L + + L+ G VI    +  
Sbjct: 239 FRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKIT 298

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                  +GK  +  + G+      I + D++  +Q+ 
Sbjct: 299 EPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 336


>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
 gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
          Length = 332

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 12/278 (4%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + K    +   ++  +V +   + +   +   IHS  +  +         S    I  + 
Sbjct: 58  FSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPKFTLLGLFHSQPLSGIQMIEMNP 117

Query: 102 NLVITLLENLLGASHETIPQLYN------RSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            L + L+E L G       +         +S + +E  + +  +AQ   V          
Sbjct: 118 QLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETAILEEVVAQFVRVYQNVWKDIVA 177

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
               L+       L +  N   NE V  +   + I  V     L IP     +  +  LS
Sbjct: 178 LDSVLDGIDTNPQLMQ--NMSPNEPVVLVTFTIKIFEVKHFINLCIPY-VFFEGIIDKLS 234

Query: 216 SQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            +N  ++    ++D      +    + +N++  +   + +L + + L+ G VI    +  
Sbjct: 235 FRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKIT 294

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                  +GK  +  + G+      I + D++  +QK 
Sbjct: 295 EPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQKL 332


>gi|258592491|emb|CBE68800.1| putative Flagellar motor switch protein fliM [NC10 bacterium 'Dutch
           sediment']
          Length = 333

 Score =  123 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 93/275 (33%), Gaps = 9/275 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + K +       +   V+I  T  +   ++  I S           +        +
Sbjct: 57  LHDRFAKQMGGTLSPLLRTFVEIRPTLVEQMAYAEYIASVAYPACLGIFGMKPLKGGAIV 116

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                L+  +++ +LG +         R L+ +E+ L  + + +    L    S      
Sbjct: 117 ELPPRLISYIIDRILGGAGRI--SDVARELTEIERALVSKLLRRTLEDLRNAWSRVSLFQ 174

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
             L +        +       + V  I  ++ I +V     L  P   +L+  + +LS +
Sbjct: 175 FELLNLEVNPGFLQL--AAPTDMVILIGFDVKIGDVEGMMSLCFPFS-MLEPVIPNLSLR 231

Query: 218 NKSENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
                  E+  +  A +  +      +++   +     T+ ++  LK G ++       +
Sbjct: 232 RWIAGHREETDEVGAAEIAKAMPAVGLSVRALLGSIPLTVHELSFLKAGDIVRLDIGASS 291

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +L   G   Y  ++G   +   ++I   I+ ++
Sbjct: 292 LGVLEVEGVPKYVVKVGTSHRKRAVQIVADISEEK 326


>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
 gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
          Length = 348

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 94/268 (35%), Gaps = 7/268 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L      ++   VDIS ++     +S  + S           +        +  
Sbjct: 67  EAFARDLSVYLSAQLRTLVDISLSAIDQVLYSEFVMSSAPPSALYVVDVHPLHQKIVLEL 126

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              L I ++E L G     + +   R LS +E+++  + + +    L +      +    
Sbjct: 127 DPRLAIFMVEKLFGGPGIFLRKP--RELSQIERRIMDKVMMRAFRELEKAWKQIHDIHLE 184

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
              F       +    +  E        ++I    S   +  P   L +    S   Q +
Sbjct: 185 EAGFESNAEFVQILPGV--EPALVATFEVSIYEQRSFINICYPYILLERMLGHSAMKQWR 242

Query: 220 SENQSE---DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           S + +E    +   +  +  ++ V +   +   +  L +++TL++G VI    R      
Sbjct: 243 SSSTTEVPPAVRQRYEEQLEKIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQ 302

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           +    +E +    GR GK+  +RI + +
Sbjct: 303 VYIGEREKFRAIPGRSGKHRALRILEVV 330


>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
 gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
          Length = 327

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 101/277 (36%), Gaps = 11/277 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T++ +  +   +   FL    +     ++ ++ +      F   I S     +    +L
Sbjct: 52  RTLQLLHENWARILSGFLSGYLRT----NISVTVSGVDQLTFDDFIRSLPAPTLLIIFTL 107

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                   +  + + +  +++ L G   E   ++  R  + +E  + ++   ++   L+ 
Sbjct: 108 EPLPGAAVMETNPSFLFPVIDLLFGGPGEMPEKI--REFTEIEVSVGRKLAEKLLENLSF 165

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 + +P +E       L++  +      V T+  ++  E+      L  P   +L+
Sbjct: 166 AWRDVFKVTPAVEGVETNPRLQQIISPSEVVAVITLTTSVGTESR-GLINLCFPH-MMLE 223

Query: 209 TTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             L  LS       SE               ++ V +   +   + ++++ + L++G V+
Sbjct: 224 PVLSQLSRFYHMRPSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDVL 283

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
               R      +     + Y  + G +G++  ++IT 
Sbjct: 284 VLDRRFGEDLDVYVGKIKRYRAQPGLLGRHLAVQITG 320


>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
 gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
          Length = 315

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 104/295 (35%), Gaps = 12/295 (4%)

Query: 6   IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
            HK   PL    L  ++        I  +   L   +   L +     M     +     
Sbjct: 29  THKEVKPLDISTLEHIS-----ASRIAGLELIL-ERWVSSLKRSLSSVMVSIPAVLKEGV 82

Query: 66  QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
              +FS  +            ++        +     ++   + +L G       ++  +
Sbjct: 83  SVVRFSEFVSQLPFPSAIGFFNVHPLRGVSMLVLDPRIIYMTVSSLFGG-PPKPYKIEGK 141

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
             + +E ++ ++ +      L +  +T  E    +    + +       R   +F+    
Sbjct: 142 EFTKIELRIVQKILEICYRELEEVWNTVMEVK-VIPQGLETNPSLLTIARPKEKFIVL-K 199

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           + +++E       L IP+E+L     +    +  +E +S ++ +   +   ++ +N++  
Sbjct: 200 LLVSLEGSEGYMYLAIPEESLDPYKEVL---KGITELRSPEVSNKLLQALEEIPLNLEVI 256

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +  +K  L D++ +K+G  +      +    +  +G       LG+VGK   I+I
Sbjct: 257 LGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKALAFLGQVGKRKAIKI 311


>gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [delta proteobacterium MLMS-1]
 gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
           switch protein FliM [delta proteobacterium MLMS-1]
          Length = 330

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 5/270 (1%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           ++   + + +       +   +DI+    +  +F   + +           ++ +  +  
Sbjct: 58  AISDTFMRSVRTSLSAALRRILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHAL 117

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           I     LV TL+E+ LG S     ++  R  + +E++L +R +  +   L +   + Q  
Sbjct: 118 IVLEPKLVFTLVESFLGGSGARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPL 177

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISL 214
                         K       + V     ++ ++  A S    IP   L  +K+ L++ 
Sbjct: 178 KVQYVRSEINPQFAKIC--QPEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTT 235

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
             + +SE                  V+I   +   K    D++ L +G  I    R +  
Sbjct: 236 FQREQSEEDIAIQRT-IVDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQ 294

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRI 304
             +   G   Y    G    N  + I  ++
Sbjct: 295 LPVYVAGMRKYMATPGVHRNNNAVLIKRKV 324


>gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
 gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
          Length = 332

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 8/274 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             Y + L   F  ++   + +   S +   +   I S  +        L+  S  + IG 
Sbjct: 60  ENYARMLSTYFSAQLRTWMHLDVISVEQLPYEEFIRSMPQLSTLLVVDLAPLSGRWVIGI 119

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
             ++   +L+ LLG     +     R+ + +E  + +R+ ++   VL        E    
Sbjct: 120 GPDVAFVMLDRLLGGPGLELA--GARAFTEIETTVFERSWSRSLGVLGDAWKGIVEDLRP 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLIS---L 214
              F + +         ++     ++++M I        + +P  TL  L   L S   L
Sbjct: 178 TLSFIEFNPQFLQIAAPNDTVAV-VSVSMRIMETTGLMHIGMPHLTLERLLPKLSSQHML 236

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                         +    +     V I   +        D++ L  G VIP        
Sbjct: 237 GMGQAGRALDPAREEALRERLRAAPVEIRAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRP 296

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +    +  Y    G       ++IT+  + ++
Sbjct: 297 VEIYVGDRVKYLGRPGVDHGRLAVQITEIADDER 330


>gi|225850288|ref|YP_002730522.1| flagellar motor switch protein FliM [Persephonella marina EX-H1]
 gi|225646133|gb|ACO04319.1| flagellar motor switch protein FliM [Persephonella marina EX-H1]
          Length = 323

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 88/265 (33%), Gaps = 5/265 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K      ++       +   +    +F+  +        ++  ++     N  +  
Sbjct: 54  ERWIKIYRDDVRKITPRINMVWRENIYITRFNTFMLKIPLPSSYNIFTIRPLKENALLII 113

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + LV T++  L G       ++  R  + +E K+ +  +           ++       
Sbjct: 114 DSRLVFTIISVLFGG-PAKPFKVEGREFTKLETKIVEDLVNSALKSFESVWNSIYPVVIE 172

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L        L K  +   NE V  +   M I+   + F    PQ   L    I  +  + 
Sbjct: 173 LRSIELNPNLAKIVS--PNEKVVVVECRMDIDGYEAPFYFCFPQSMFLPIKEIIYTQVSV 230

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           SE            K  +LN+ +   I   +  ++D+++ K G  +     +     L  
Sbjct: 231 SE--DPIWKKNLDEKIRKLNLKLTMEIAKLQFKIRDILSWKEGSELDLGVTKDDIFRLYV 288

Query: 280 NGKEIYSCELGRVGKNYTIRITDRI 304
             +  ++ +LG+V   Y   I + +
Sbjct: 289 EDRHKFNVKLGKVNNKYAAMIVEPV 313


>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
 gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
 gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
          Length = 372

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 7/272 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L      ++   VDIS T+     +S  + S                       
Sbjct: 67  ESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLREDELEYRSIFEI 126

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV+  +E L+G   +      +R +S +E+++  R + +    L +      E S  
Sbjct: 127 DPRLVVYTIEKLMGGDGQ--LMDESREVSPIEQRIMSRVMKRAYRKLEESWRKAYELSVE 184

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-- 217
              F       +     + E     + ++ + +  S   +  P   L +    S   Q  
Sbjct: 185 EVAFESNAEFVQII--PAAEPALVASFDVRVYDEPSFINICYPYLMLEQMLGRSGMEQWI 242

Query: 218 -NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + +     ++ D +     +  VN+   +      + ++  L+ G VIP          
Sbjct: 243 SSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPIK 302

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           +  NG++ +    GR G+   +RIT   + + 
Sbjct: 303 VFVNGEQKFEAVPGRSGRQRALRITAAESPEN 334


>gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 334

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 9/268 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   Y + L       +   + +   S     F   + S     + +  SL   +    +
Sbjct: 61  LHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLTGPAVL 120

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
             +   +  +++ L G + +   ++  R L+ +E  + K+ I ++   L        E +
Sbjct: 121 ETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQDLYEVT 178

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSS 216
             L+       L +  N    E +  +  +  I   +     L +P   +L+  L  LS 
Sbjct: 179 AELQSIETNPRLMQVMN--PGEIIALLTFSTVIGGTSRGLINLCLPY-LMLEPVLSKLSI 235

Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
             ++  +     D   R  Y   Q  + +       K +++D + L+ G V+    R   
Sbjct: 236 HYRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDE 295

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRIT 301
              L    K  Y  + G +G+   ++IT
Sbjct: 296 DVDLFLEEKLKYKVQPGTMGRFMAVQIT 323


>gi|296107383|ref|YP_003619083.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649284|gb|ADG25131.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99
           Alcoy]
          Length = 353

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 75/266 (28%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +            D +I        K    + S     +              I   
Sbjct: 91  RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFD 150

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  V  L++   G + +   Q      +  E ++ +    ++   L            ++
Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLIHACEPI--IQLDV 208

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219
             F D    +        E +      +       +F  I+P   L      + L +   
Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 268

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +    + I+    +   + + +   +    +TL  V+  K+G  +P    E+    L  
Sbjct: 269 DDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEE--VTLDI 326

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
            G   ++  LG   +   +++   I 
Sbjct: 327 EGTPSFTATLGSANEKRALKVIKIIR 352


>gi|52842019|ref|YP_095818.1| flagellar motor switch protein FliM [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629130|gb|AAU27871.1| flagellar protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 355

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 75/266 (28%), Gaps = 5/266 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
              +            D +I        K    + S     +              I   
Sbjct: 93  RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFD 152

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
           +  V  L++   G + +   Q      +  E ++ +    ++   L            ++
Sbjct: 153 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLIHACEPI--IQLDV 210

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219
             F D    +        E +      +       +F  I+P   L      + L +   
Sbjct: 211 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 270

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            +    + I+    +   + + +   +    +TL  V+  K+G  +P    E+    L  
Sbjct: 271 DDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEE--VTLDI 328

Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
            G   ++  LG   +   +++   I 
Sbjct: 329 EGTPSFTATLGSANEKRALKVIKIIR 354


>gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 345

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 96/285 (33%), Gaps = 9/285 (3%)

Query: 22  TGKLGDKKT--IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
           T   G+ +   ++ +  S    +   L          +  +      +  F   +   K 
Sbjct: 55  TRGSGEMRVPNLDIVLDSFARKFSTSLTNTLM----RNFIVEREDITTTNFQQSLLDLKS 110

Query: 80  NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
                   +S             +  TLLE +LG+S  +     +R+L+T+E  + K  +
Sbjct: 111 QGAVGIYGISPLKHGCLFHFDTLMAFTLLEIMLGSSRSSESLPLDRNLTTIEMFVLKTIM 170

Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFV 198
             I   L   +    E    L    + ++   N      E + T   N+ + N +     
Sbjct: 171 QDICNELQTAMRPVVELQAQLTKVEN-NFRLVNIVEPEVEVLVT-RFNIQLGNELCGQMR 228

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           LIIP  TL        +    ++  +    +  AR+T ++   +  R  L   T++ ++ 
Sbjct: 229 LIIPYLTLEPLREKFKALVTITQAAANTWTEIIARETLEMESQVIARSGLITMTIRRILG 288

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           L+ G +I   +       +    + ++    G         +T R
Sbjct: 289 LQPGDIIDLQYDPDRPLTVLVEDQPLFLAIPGERNGKKAFHVTGR 333


>gi|83955115|ref|ZP_00963771.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
 gi|83840444|gb|EAP79617.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
          Length = 318

 Score =  118 bits (297), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 103/279 (36%), Gaps = 6/279 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +G    + L     + M    + S  S        +I    +    +  +   +     +
Sbjct: 39  IGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEGLPKPTFLAVGTGHPFVGEILV 98

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                +++T +E +LG + + +        + +E    +R  + + A L + +S    ++
Sbjct: 99  VMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGERLASAVFAELERSLSVVGAAN 158

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLS 215
             L+        +      +      + +++T+     +  L+IP + L  +   L  + 
Sbjct: 159 LELDRIET--EAEGAAIAKNTSLCARLRLSLTLAGNTGNLDLVIPYDALEQILPDLGKVY 216

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             ++  +Q          +  + NV++D  ++     L+ +++ + G  I F   E   A
Sbjct: 217 FGDRMVSQD-QWRGLIGAQIERANVDLDVVLSENVFPLQKIMSWRPGDTIDFGIEEGRDA 275

Query: 276 ILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLKN 313
            ++     +++  LG R      ++IT+++   +    +
Sbjct: 276 TVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314


>gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
           25644]
 gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
           25644]
          Length = 336

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 95/276 (34%), Gaps = 11/276 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + K    +   ++  +V +   + +   +   +HS     +           +  +  + 
Sbjct: 63  FSKMTGNVLSTQLRTNVSVDLAAIEQISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEINP 122

Query: 102 NLVITLLENLLGASHETIPQLYNR-----SLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
            L   ++E L G           +     S S ++  L +    +I  V         E 
Sbjct: 123 QLCSLMVELLCGGLDVRTQHPDEKIPSIESFSDIDLALMRELFKEIVNVYKTSWKDIVEL 182

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
           +   +       L +      NE V  +   + +  +++   L IP     +  L  LS 
Sbjct: 183 NSKFDTIDTNPQLSQA--MSPNEPVVLVTFTVKVFGISTFINLCIPY-VFFEGILDKLSI 239

Query: 217 QNKSENQSEDLID---PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           +N  ++ S+D  D      R    + + I+T++   + +  D + L+ G VI    +  +
Sbjct: 240 RNWFDSSSDDNEDDSLEIKRGLNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTS 299

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                  G+  +  + G+      I + D++  ++ 
Sbjct: 300 PLETYIEGEPFFYVKPGQKDGQLAIELLDKMEGEED 335


>gi|83944184|ref|ZP_00956640.1| possible flagellar motor switch protein FliM [Sulfitobacter sp.
           EE-36]
 gi|83845051|gb|EAP82932.1| possible flagellar motor switch protein FliM [Sulfitobacter sp.
           EE-36]
          Length = 318

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 103/279 (36%), Gaps = 6/279 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +G    + L     + M    + S  S        +I    +    +  +   +     +
Sbjct: 39  IGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEGLPKPTFLAVGTGHPFVGEILV 98

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                +++T +E +LG + + +        + +E    +R  + + A L + +S    ++
Sbjct: 99  VMDQAVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGERLASAVFAELERSLSVVGAAN 158

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLS 215
             L+        +      +      + +++T+     +  L+IP + L  +   L  + 
Sbjct: 159 LELDRIET--EAEGAAIAKNTSLCARLRLSLTLAGNTGNLDLVIPYDALEQILPDLGKVY 216

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             ++  +Q          +  + NV++D  ++     L+ +++ + G  I F   E   A
Sbjct: 217 FGDRMVSQD-QWRGLIGAQIERANVDLDVVLSENVFPLQKIMSWRPGDTIDFGIEEGRDA 275

Query: 276 ILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLKN 313
            ++     +++  LG R      ++IT+++   +    +
Sbjct: 276 TVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314


>gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila
           LSv54]
 gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea
           psychrophila LSv54]
          Length = 323

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 6/268 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           S    Y   L    +      + I     +S  F  +              L        
Sbjct: 62  SFARHYSILLSNQLQ----RTISIERIKLESFDFQDVFDKIAHPGAIGMLDLPPLQQGGL 117

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           I  + +L  +L+E LLGAS +      NR  +T+E  + K  I      L++  S     
Sbjct: 118 ILFNPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGLDKAFSPLVNM 177

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
           + +L        L   T+   ++ V      + +   +   +L+IP   L          
Sbjct: 178 NSSLVKIDSKPRLMSITD--PDDEVIACTFRVILGKDSGEILLLIPLAALEVLHEDLQHL 235

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
              S  ++       A +  ++  +I  +    + ++ D++ L++G ++   +       
Sbjct: 236 LRASAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLK 295

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           +       +    G       I +T+RI
Sbjct: 296 VLVENSPKFYGIPGTHNGKKAISLTERI 323


>gi|90418398|ref|ZP_01226310.1| possible flagellar motor switch protein fliM [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338070|gb|EAS51721.1| possible flagellar motor switch protein fliM [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 348

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 98/282 (34%), Gaps = 7/282 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +   +               +D++    +S     +  +  +  +++  S   + S  + 
Sbjct: 70  MAETWAASAATKISAIAGASLDLTLREVESDFGPELDEAEDDGTMYAPLSSPRFRSPGYA 129

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
              +  +  L+  L  A           + + +++ + K  +A I+           E  
Sbjct: 130 MLDHEALEALISALFAAEPSPPGTPPR-TPTDLDRSIVKLGLATIADSALSVFEMIGELR 188

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISL 214
            ++ +  +   L +     ++ F+     ++T+ +++++    +P       L+      
Sbjct: 189 LSVGNIINAAELGEQLAGETDRFI-LFRFDLTVASLSTTITFALPGALFAPHLRFLREPP 247

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                  ++ E   +       + ++ +   +  KK  L  +    +G  IP      + 
Sbjct: 248 KM--PPPDREESWSNAIKESFAKSDLRLSAIVTKKKIDLGTIAGFAVGDTIPLDVSANSL 305

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             +    + ++   +GR   +Y +RI +RI+  ++ + + L 
Sbjct: 306 IAIECEDQPLFRAHMGRSRDSYVVRIEERIDPAEEFIDDILS 347


>gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 322

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 89/268 (33%), Gaps = 4/268 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K   +  + +  +   +S     + +F   I        ++  ++        +  
Sbjct: 53  EKWVKIFREEIRAEFPVVNMVSKGKIATMRFGDFIGKIPLPASYTIFNMKPLKDPSLLII 112

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + +V  L+  L G       ++  R  + +E ++ ++ +  +     +           
Sbjct: 113 DSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDIYPIEIE 171

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            +   + + +       + + +    M + IE +        PQ  L       L +   
Sbjct: 172 RKSI-EFNPILVRIVSHAEKVIVAEIM-IDIEGLEVPLTFTFPQ-MLFLPIKDILFTDTF 228

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
               S +      +K  ++N+N+   ++     +++ +  ++G  I    ++     L  
Sbjct: 229 GSEVSPEWRKELIKKLLKVNLNLTLELDKFSVLVEEFLNYEVGTEIILNKKQSEELDLKV 288

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFD 307
             K  +   +G++ K +   IT  I  +
Sbjct: 289 EDKVKFKASIGKLDKKFAAMITKIIKEN 316


>gi|117926842|ref|YP_867459.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1]
 gi|117610598|gb|ABK46053.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1]
          Length = 332

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 89/265 (33%), Gaps = 5/265 (1%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L     +K+  +V +   +  +  F   +H+ +     +   +    S   I    +++ 
Sbjct: 71  LSFKLTQKVGREVHVQPKTTTNQVFGRFLHTVEPPIFINILRVEPSQSMALISIDGDVMY 130

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
           T+LE   G   ++      R+ S  E K+  R +      +          S  L     
Sbjct: 131 TVLEGFFGGPGDSERPF--RNFSPFEMKVIDRIMDVAREQIELSWKKLDP-SFRLVLARW 187

Query: 166 IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNKSENQ 223
            +  +       +E V  I  ++ + +   +  +  P     L K  L     Q +    
Sbjct: 188 ENQPQFAAVMPLDETVFLITFSVEVGDAEGNITICFPAVILELFKQQLKQGFQQKEEVEG 247

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           +   +D    +   + V++   +   + +++ ++ LK+G              +   G +
Sbjct: 248 ASAWMDALKNELSLVRVDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEMAVQIGGMD 307

Query: 284 IYSCELGRVGKNYTIRITDRINFDQ 308
            + C  G V     IRIT  +   +
Sbjct: 308 KFMCHAGVVDGKRAIRITRTVQPQK 332


>gi|333004050|gb|EGK23584.1| flagellar motor switch protein FliM [Shigella flexneri K-272]
 gi|333017823|gb|EGK37130.1| flagellar motor switch protein FliM [Shigella flexneri K-227]
          Length = 268

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 8/242 (3%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
           S   +  P  P    R+  +      I      +   + +         +    DI+  +
Sbjct: 30  SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +   +     +       +   L        +  S +LV   ++NL G       ++  
Sbjct: 84  IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
           R  +  E+++  R +       +                 ++     N     N+ V   
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202

Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
             ++ I N+   F + +P   +     L+       S N+ ++  D   R+     + + 
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262

Query: 244 TR 245
             
Sbjct: 263 AN 264


>gi|329897652|ref|ZP_08272176.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC3088]
 gi|328921101|gb|EGG28510.1| Flagellar motor switch protein FliM [gamma proteobacterium
           IMCC3088]
          Length = 340

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 87/286 (30%), Gaps = 13/286 (4%)

Query: 19  ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
            R  G   +   I+ I+      ++  L ++ +    + VD    + ++  F   +    
Sbjct: 46  DRTIGI--NLGAIDMITERFTRHFRLGLLEVLRSSPKIHVD----AVKTVVFEKYLSDLA 99

Query: 79  ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKR 137
                +   ++    +  +    N+V   L+N  G     I      R  +  E ++   
Sbjct: 100 PPLSVNTIRINPLRGSSLVVLDPNVVFAALDNFFGGFGRGIAGLPPGRMFTPTETRIINI 159

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            +  I A L +  +                   +  +      V  +++ ++   V    
Sbjct: 160 MMELIFASLKEAWAPIMPIECENVSAEINPQFVQIADEKDLVVVCHLSVEISEAEV-GRI 218

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLK 254
            ++ P  +L        +      +   D     D          +     +   +  L 
Sbjct: 219 DIVYPFASLKPIRDELRARVQSDTDTPRDAGLWHDDLETSASYAELEAVVTLGETEIPLH 278

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              +L+ G V+ F   E    I    G  +++ ++G V     I+I
Sbjct: 279 QFQSLRSGDVLWFKKYEDAQMI--IEGVPVFAADVGTVKGQVAIKI 322


>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
 gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
          Length = 333

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 98/275 (35%), Gaps = 8/275 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K +  I   ++  +VD+   S +   F   +HS     +      +       I  
Sbjct: 61  EEFAKIIGNILSTQIRTNVDVKLASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIEL 120

Query: 100 SNNLVITLLENLLGAS--HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
           +  L + L++ L G+S   +    +   S + +E  + +  +   S           +  
Sbjct: 121 NPQLCLQLVDLLCGSSEIRKNDEVMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLK 180

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
             ++       + +      NE V  + + + +  V +   + +P     +  L  LS +
Sbjct: 181 VKIDSTETNPQILQT--MSPNEPVVLVTLTVELHGVKTFINVCVPY-IFFEGILEKLSLR 237

Query: 218 NKSENQSEDLIDP---FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           N   ++ E          +  +   VN++  +     TL++ + L++G +IP   +    
Sbjct: 238 NWFHSEKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDP 297

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +LS      Y  + G  GKN  + +   I  +  
Sbjct: 298 LVLSVEELPRYFVKPGLKGKNMAVEVLQYIGGETD 332


>gi|213028082|ref|ZP_03342529.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 247

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 8/235 (3%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +    + +E I+      ++  L  + +       DI+  + +  
Sbjct: 20  DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 73

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 74  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 133

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
             E+++  R +       +                 ++     N     N+ V     ++
Sbjct: 134 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 192

Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            I N+   F + +P   +     L+       S ++ ++  D   R+     + +
Sbjct: 193 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELEL 247


>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
 gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
          Length = 331

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 93/275 (33%), Gaps = 8/275 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K    I   ++  +V +   S +   F   +HS     +              I  
Sbjct: 60  EEFAKISGNILSTQVRTNVGVQLASIEQVSFDEFVHSVPRFTLMGLFHSVPLDGTQIIEI 119

Query: 100 SNNLVITLLENLLGAS--HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
           S  L + L++ L G++     I +L   S + +E  + +  +               E  
Sbjct: 120 SPQLCLQLVDLLCGSTEIRSNIDELSKESFTDIEMAILEEILNNFINAFELAWRDVVEVK 179

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
             L+        +       NE V  +   + +  V +   L +P     +  L  LS +
Sbjct: 180 GKLDSTET--NPQMMQTMSPNEPVVLVTFTVELYGVKTFINLCVPY-IFFEGILEKLSLR 236

Query: 218 NKSENQSEDLIDP---FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           N   ++ E          +  +   VN++  +     TL++ + L++G +IP   +    
Sbjct: 237 NWFHSEKETDHTDSGKIEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDP 296

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            ILS      Y  + G  GKN  + +   I  +  
Sbjct: 297 LILSVEKLPRYFVKPGLQGKNMAVEVLQYIGGETD 331


>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 326

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 15/285 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +TI+ +  +        L    +  M     IS  S     +   I S  +        +
Sbjct: 49  RTIQMLHENFARGASTELAGYLRSAM----SISIVSVDQVTYQEYIRSLSDPTFMYLVPI 104

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
               ++     S + V  +++ LLG   +  P    R L++VE  L  R +        +
Sbjct: 105 ID-VTSVIFEMSLDFVFAIIDKLLGGPGK--PLREVRELTSVEATLMNRVMDVYLKHWLE 161

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLL 207
                     NL     ++Y       +  ++ V  I     +    +   + +P   + 
Sbjct: 162 AWKPI--VQWNLGKP-TLEYSPGFVQIMPGSDVVIVITYEEKLGEKTAIGTICVPYMAM- 217

Query: 208 KTTLISLSSQNK---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +  + +L++      S+   +D           + V +   +      + +++   +G V
Sbjct: 218 EGFVQNLTAHRWFGVSKPTPDDWKTTLMEVIEDITVEVSAVLGEASVGIGEILKWNVGDV 277

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I    R      L   G        G   +   + +T R   D+K
Sbjct: 278 IELSRRSDEEVDLLVEGNLFAKGIPGIYQRRKALLVTGRSEEDRK 322


>gi|157736463|ref|YP_001489146.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018]
 gi|157698317|gb|ABV66477.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018]
          Length = 368

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 104/292 (35%), Gaps = 11/292 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           K  +++     +         +   VDI  T+ +   +   I S  +    S  S+    
Sbjct: 56  KALTTMHDKMLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLD 115

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               I C+  +   ++ +LLG+         +R L+ +E K+ +        +L +  S 
Sbjct: 116 GRIVIECNPTISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSD 175

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIENVASSFVLIIPQE---TLLK 208
               +  +E     D        +S+   V  +   +TI+  +    +  P      LL 
Sbjct: 176 ISSLNFRIE---SSDTNANAIQIVSDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLN 232

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +  + S+ K++  S    +          + ++  +   + T  +++ LK   +I F 
Sbjct: 233 KIVDKIFSEGKNKKLSRK--EDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFN 290

Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKNFLHKR 318
                + A +  N KE +S   G       ++I   ++ + Q++L      R
Sbjct: 291 KNASSSSATVYINKKEKFSAVSGISNNRKAVQIKANLDREKQETLDTLREMR 342


>gi|315635624|ref|ZP_07890887.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22]
 gi|315479921|gb|EFU70591.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22]
          Length = 368

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 104/292 (35%), Gaps = 11/292 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           K  +++     +         +   VDI  T+ +   +   I S  +    S  S+    
Sbjct: 56  KALTTMHDKMLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLD 115

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               I C+  +   ++ +LLG+         +R L+ +E K+ +        +L +  S 
Sbjct: 116 GKIVIECNPTISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSD 175

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIENVASSFVLIIPQE---TLLK 208
               +  +E     D        +S+   V  +   +TI+  +    +  P      LL 
Sbjct: 176 ISSLNFRIE---SSDTNANAIQIVSDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLN 232

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +  + S+ K++  S    +          + ++  +   + T  +++ LK   +I F 
Sbjct: 233 KIVDKIFSEGKNKKLSRK--EDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFN 290

Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKNFLHKR 318
                + A +  N KE +S   G       ++I   ++ + Q++L      R
Sbjct: 291 KNASSSSATIYVNKKEKFSAVSGISNNRKAVQIKANLDREKQETLDTLREMR 342


>gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia
           stuttgartiensis]
          Length = 318

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 106/274 (38%), Gaps = 12/274 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
           K+ ++KIS ++           F + +   V +   + +   +   ++SF +    S   
Sbjct: 53  KRQLQKISENMAVNMGL----TFSQYVRTTVGVELIAIEEFSYELFLNSFTDLVCASVVD 108

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
           L+ +     +       + +++  LG   +   ++  R L+ +E+ +  + ++ +   + 
Sbjct: 109 LTPYRGKGCLTLDAGFCLAMIDRGLGGPGKIQQKI--RPLTIIEESVVSQVLSNVLHSMC 166

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
            C +   E    +    D+D         + E +  IN  ++ E    + V  +P  TL 
Sbjct: 167 LCWNDVAEIEWQIAK-TDMDLRSLQV-AHNTESMIAINFAISGELGTGTLVFCLPVATLE 224

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                 +    ++    E+ I    +   Q+ + ++T +   + +  +++ L++G VI  
Sbjct: 225 ----AVMGKITEATLNREEEIVIIKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISL 280

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            ++      L  +    +    G  GK   I+IT
Sbjct: 281 DNKITDHLSLEIDEVPKFFGTPGVSGKKLAIKIT 314


>gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
 gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
           20603]
          Length = 308

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 107/310 (34%), Gaps = 12/310 (3%)

Query: 2   RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
                H+   P        +T      + +E    +    +   L      ++ +   I 
Sbjct: 7   STARRHRKGPPERYDFRRPMTIAREHARIVEMACETFARQWATQL----TSRLRVMASIE 62

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
               +   +   I +   +      +     S   +   +N  +  L+ LLG       +
Sbjct: 63  LDKLEMVTYDEYIATLDPHTTLVLFTADETRSTALLQIPSNTTMLWLDYLLGGPGLERQE 122

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL-EDFYDIDYLKKNTNRLSNEF 180
              R L+ +E  L +  +    A +    S+    +P +    Y+  +++      ++E 
Sbjct: 123 N-PRELTEIETALFRSLLDSSLADMRYAFSSITPMNPKIRGLQYNPQFVQA---VPASEA 178

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-KTYQLN 239
           V   N ++T+ +  S+  ++   + LL    +     + S  Q E+    F R +    +
Sbjct: 179 VLVANYSLTVGDRVSAATMMFAADALLNPLKVGEGEADPSAAQREEQRVSFERLRLSMND 238

Query: 240 VNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           V +D  +     T++  D++ + +G VI   H       +   G+ I     G  GK   
Sbjct: 239 VPVDVGVRFNSITVRPRDIIDMAVGDVIELRHAASKPLRIVVEGRTIGHGVPGNNGKQLA 298

Query: 298 IRITDRINFD 307
           +++TD     
Sbjct: 299 VKVTDTHRES 308


>gi|91792689|ref|YP_562340.1| flagellar motor switch protein FliM [Shewanella denitrificans
           OS217]
 gi|91714691|gb|ABE54617.1| flagellar motor switch protein FliM [Shewanella denitrificans
           OS217]
          Length = 190

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 37/116 (31%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + L       M    ++S    Q  KF   +H+       +    S       I  
Sbjct: 56  ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
              LV  L++N  G       ++  R  +  E+++ +  +  I     +  +   +
Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMD 171


>gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 97/282 (34%), Gaps = 18/282 (6%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           T+E +  S       +L  + +       +I+       ++     S +++ +F   ++S
Sbjct: 20  TVENLYDSFARALAPYLTGLLQSF----CEININGIVEKRYQEFSSSVQDHSLFGMITMS 75

Query: 90  SW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                   +   +     L   ++E LLG          +R  + +EK + +  + +I+ 
Sbjct: 76  PANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEY--DLSRDFTDIEKAILQYVLKKITE 133

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L +      +   +L       +L +       + V  + + + IE + +   +++P  
Sbjct: 134 FLGEAWGQYLDIEASLTGLQTNPHLLQM--SAQEDVVIQVELEVVIEKLRARINMVMPAP 191

Query: 205 TLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTL 259
            + + T+    S     + Q ED          Q      V +   ++      +D++ L
Sbjct: 192 NVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQL 251

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
             G VIP   +  +   L       +    G+      + I+
Sbjct: 252 APGDVIPLNKKVDSAVSLYVEDVACFEARAGQTKMRKAVEIS 293


>gi|114777574|ref|ZP_01452555.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans
           PV-1]
 gi|114552045|gb|EAU54562.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans
           PV-1]
          Length = 330

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 91/271 (33%), Gaps = 6/271 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           +L     +   + + E    DV +  +S +S  +  I+ S     V+       +     
Sbjct: 61  NLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDIV-SVDAPQVYFVFEADGY-GRML 118

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           +     L++  ++ +LG   +       ++LS VE +L++R   +IS  L          
Sbjct: 119 VSFDTALIVAFVDAMLGGDGD--ADDNPQTLSAVELRLSERIADKISKTLGDLWQPVYPL 176

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LS 215
             +L            T  +   F T  ++ +  + +     +  P+  L     +  ++
Sbjct: 177 DFSLHKLDYDPQFLAVTGAMEKCFSTFFDIKLN-DELNGQMGIYYPRSFLEPMLDVLRVT 235

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             ++S +   +  +   ++  Q    +   +   +  +   + +  G  +P   R     
Sbjct: 236 VTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPC 295

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L  +   ++    G         IT+ +  
Sbjct: 296 SLWIDEIPLFQATPGEKNGGLAAEITEPVQP 326


>gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
           DSM 12885]
 gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
           DSM 12885]
          Length = 322

 Score =  108 bits (271), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 98/284 (34%), Gaps = 12/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  I  ++  L   FL    +  +++DV     +     +   I       V +  +L
Sbjct: 33  RTLAMIHENVARLATGFLSGQLRTVVEVDVLEVEET----TYGEFITGLANPTVVAVFNL 88

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
               S+  +    ++   +++ L             R L+ +E  + +  +  +   + +
Sbjct: 89  PPLESSAVMDLEPSIAFPMVDRLF--GGPGTGAAAGRGLTEIETVVMRVILQGLLGAVAE 146

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                 +    L              +  NE    + M +       ++ L +P   LL+
Sbjct: 147 GWGQLVQVQGELVTVA--ANPLFVQVQPPNEIAVRVVMAVRFGQQEGAWRLCLPY-PLLE 203

Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
             L  L+      +         + +      + + +   +   + T+++++ L+ GQV+
Sbjct: 204 PVLPRLAVHQYYARETKSHARSRERWEEGLRHVPLPVTVVLGRTRLTVRELLALEPGQVL 263

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               R      +   G+  +    GR G    +++ +R+  +++
Sbjct: 264 RLDTRAGGLVDVLVAGRPKFRGLPGRAGPRLAVQVVERVAEEEQ 307


>gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
 gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
          Length = 321

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 84/240 (35%), Gaps = 4/240 (1%)

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
           +F  +I         +  +++      F+     ++ +++  + G S +   ++  +  +
Sbjct: 84  RFEDLITKLPVPSCINMFNITGLKGTHFLILDPRMIYSIVSVIFGGSAK-PYRIEGKEFT 142

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E K+ K+ +  + +   +  ++         +      L    N     F+   ++N+
Sbjct: 143 KLELKIIKKVVDLLLSAFQESWNSILSGEVMYLETEVNPALIAPMNSKKEMFIQA-HINI 201

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
            I+ +     L I   +L        +    S+    D I+        L V++   I+ 
Sbjct: 202 EIDGIDYPIFLAIQNSSLEPVVDRLRNVSEVSDYVDYDSIN--KNLIKNLTVSLSVAIDG 259

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
               +KD++  ++G  I           ++  G       LGR      ++I   ++  +
Sbjct: 260 GDFMVKDILEWEVGDTITLKTSANRPVKVNIEGMLKMYGVLGRSNSKKAVKILKLLDNKE 319


>gi|226225727|ref|YP_002759833.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27]
 gi|226088918|dbj|BAH37363.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27]
          Length = 331

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 95/281 (33%), Gaps = 14/281 (4%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +   ++     K        ++   +++   S +   F     S           ++   
Sbjct: 48  RTLEAMYERLVKGFEAWLISRVRGQIEVRLQSVEQFSFGEFTLSLPMPCSSYIFDIAGTG 107

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               I         +++ L G           R+L+ +E+   +    +I+ +L +    
Sbjct: 108 QKGVIDVGPEFSTYIVDRLFGGEGTGSALT--RALTPIERMAVRNVADKITGLLQEIWQD 165

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK---- 208
                 N+  F     + +  NR   + V   N+ +   +V+S  +L +P   L K    
Sbjct: 166 HVAMDLNITGFESSPEILQVVNR--EDPVLVANVEVNTGSVSSLLLLCLPFSVLDKFFTS 223

Query: 209 ---TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                L  L++  +    +    +          V +  R+   + +++D+  +  G VI
Sbjct: 224 NGQQRLALLNTNEQEREATRQRSEAA---LRATKVPLTARLPDFQLSMRDLAQITEGSVI 280

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           P    +    ++ A  +E +    GRV  N  +RI D +  
Sbjct: 281 PTAIPKDARVLIRAGTQERFIGHAGRVNGNLAVRIVDALPS 321


>gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
           20745]
 gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
           20745]
          Length = 302

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 12/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           ++I+ I    G     FL      K+   V +S    +       +           + L
Sbjct: 22  RSIQAIQEGFGRFAGNFLA----SKVRAAVHVSLVHVEQSTLGEFLDGLPFPTTLFISPL 77

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVLN 147
                   +    NL   +++ +LG   ++ P      S++ +E  L +     + A   
Sbjct: 78  DPLVGQAVMQIDMNLAFLVIDRMLGGPGDSTPAPRAGASVTEIEMLLLEELGQGLFAEFV 137

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
              +  Q +S             +    L  E    I   + +E       + +P  ++L
Sbjct: 138 NAWA--QVTSLRAPHCEVALGAMQVQGLLPTEIALVIRHEVRMEGATGRLTICLP-ASML 194

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKT--YQLNVNIDTRINLKKTTLK--DVVTLKIGQ 263
           +  L  L+++    N    + +   R        V++  R+ L + T++  D++ +++G 
Sbjct: 195 EPILPRLNARLLFANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGD 254

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           VI       +   +    +  +  + G++     +RI +R+  D
Sbjct: 255 VIRLDTAADSALPVLVEDRVRFLGQPGQIAGQLAVRIVERVTDD 298


>gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 342

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 102/284 (35%), Gaps = 12/284 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           ++I  +       +   L    +       D++  S     +   + S  +   F+  S+
Sbjct: 55  RSIRNLHDKFARNFSSSLSNFLRTIT----DVNLVSVDQMTYGEFLMSLPDPTNFNIISM 110

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
                +  +  + +LV  +++ LLG     +P    R L+ +E+ + +  I  +   L  
Sbjct: 111 IPLDGSAVLEINPSLVFPIVDKLLGGPG--LPMYKVRELTALEQHIMESVIYLLLKELED 168

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                   +         +  +       NE V  +   +   +V+    L +P   +L+
Sbjct: 169 TWKQVIP-NIKFRKEITENSPQVVQIVAQNEVVVLVVFEVKFADVSGMINLCLP-AVVLE 226

Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
             L  +SSQ+      +    D +D       +  + +   I     T+ D++ L  G  
Sbjct: 227 PILGKISSQDWLVGAKKVKGLDYLDRILDILMEAYLPLKLEIGPTILTVGDILELVEGDT 286

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           I F H+ +   +L  N  + ++ E+G +G      I + +   +
Sbjct: 287 IVFEHKAEEDVVLKVNNLDKFATEMGVIGVKKGALIKNILEESE 330


>gi|188997560|ref|YP_001931811.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932627|gb|ACD67257.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 322

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 88/270 (32%), Gaps = 4/270 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K   +  + +  +   +S     + +F   I        ++  ++     +  +  
Sbjct: 53  EKWVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDSSLLII 112

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + +V  L+  L G       ++  R  + +E ++ ++ +  +     +           
Sbjct: 113 DSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVYPIEIE 171

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
            +   + + +       + + +    M + IE +        PQ  L       L +   
Sbjct: 172 RKSI-EFNPILVRIVSHAEKVIVAEIM-IDIEGLEVPLTFAFPQ-MLFLPIKDILFTDTF 228

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
               S +      +K  ++N+ +   ++     +K+ +   +G  I    ++     L  
Sbjct: 229 GSEVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEELDLKV 288

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             K  +   LG++ K +   IT  I  +  
Sbjct: 289 EDKVKFKASLGKLDKKFAAMITKVIKENDD 318


>gi|260544318|ref|ZP_05820139.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038]
 gi|260757052|ref|ZP_05869400.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str.
           870]
 gi|260759577|ref|ZP_05871925.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str.
           292]
 gi|260762821|ref|ZP_05875153.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882862|ref|ZP_05894476.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str.
           C68]
 gi|261215633|ref|ZP_05929914.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str.
           Tulya]
 gi|260097589|gb|EEW81463.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038]
 gi|260669895|gb|EEX56835.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str.
           292]
 gi|260673242|gb|EEX60063.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677160|gb|EEX63981.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str.
           870]
 gi|260872390|gb|EEX79459.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str.
           C68]
 gi|260917240|gb|EEX84101.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str.
           Tulya]
          Length = 233

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 6/198 (3%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           L R  G  GD   ++ ++         F  +  K+      D    S +S   +     F
Sbjct: 20  LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +  + +      W  + ++     LV +++E + GA     P   +     VE+K+A  
Sbjct: 77  DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136

Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
               ++  L++  +T+         D  D     +    LS  F  T  + +T       
Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194

Query: 197 FVLIIPQETLLKTTLISL 214
             L++P+ T  +  +   
Sbjct: 195 MHLLLPRSTQKRCRMQLP 212


>gi|167770206|ref|ZP_02442259.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM
           17241]
 gi|167667528|gb|EDS11658.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM
           17241]
          Length = 329

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 94/272 (34%), Gaps = 18/272 (6%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K ++ +  +   L   +L  I +  +  DV +        ++    ++  +  +     +
Sbjct: 47  KAMDGLHETFSRLLSSYLSGILR--IGCDVQV--LQIDEERYYEYNNALPDTALIGIVGM 102

Query: 89  SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                        I  S  +   L++ LLG S +       R  + +E  +      +I 
Sbjct: 103 DPEGEDYSEGTMIIDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIV 160

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
             L      + E    L+     +          +  +  + +N+    + ++  + +P 
Sbjct: 161 GKLEDSWKNSIEVKMTLDSIET-NSRLLQIFAPEDTVIIVV-INIKAGKLNATMSICMPA 218

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVT 258
           + + +         +KS  +++   +   ++         ++ I    +  K  LKD++ 
Sbjct: 219 DNMEEIIDKFSMKYSKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQ 278

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
           L+   +IP   +      ++ +G   ++ +LG
Sbjct: 279 LQPSDIIPLNKKITDDIQVTLDGLPWFTAKLG 310


>gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium
           1_7_47FAA]
          Length = 296

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 99/285 (34%), Gaps = 18/285 (6%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           T+E +  S       +L  + +       +IS       ++    +S  ++ +F   +LS
Sbjct: 20  TVENLYDSFARALAPYLTGLLQSY----CEISINGIVEKRYQEFSNSVPDHSLFGMITLS 75

Query: 90  SW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                   +   +     L   ++E LLG           R  + +EK + +  + +I+ 
Sbjct: 76  PANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDIEKAILQYVLGKITE 133

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L +      +   +L       +L +       + V  + + + I+ +++   +++P  
Sbjct: 134 FLGEAWGQYLDVQASLTGLQTNPHLLQM--SAQEDVVIQVELEVVIDKLSARLNMVMPAP 191

Query: 205 TLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTL 259
            + + T+    S     + Q E+          Q      V +   ++      +D++ L
Sbjct: 192 NVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQL 251

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
             G VIP   +  +   +       +  + G       + I++ +
Sbjct: 252 TPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISNEL 296


>gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5]
          Length = 98

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 51/98 (52%)

Query: 1  MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
          M       +   + P LLA+LTG LGD+  + KI S+ G +Y +F P + K +  LDV +
Sbjct: 1  MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTV 60

Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
          +Y  C+ G  +H+I     N     A+L +WS N  + 
Sbjct: 61 NYLGCEIGYKNHLIDDLSANVTLVDATLRNWSQNVTLA 98


>gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
           5159]
 gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
           5159]
          Length = 334

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 90/275 (32%), Gaps = 5/275 (1%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+   + +F       ++   V       +       +       V   A L       
Sbjct: 40  QSIHEAFDRFASNYLSAQVRSAVHCELGPIEQTTLGDYLDRLPSQVVLCIAELEPLVGRI 99

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +         L++ +LG + E  P     +++ +E  L +     +   L         
Sbjct: 100 VLEIDFATASRLVDRMLGGAGEERPPFTATTITEIELLLLRELGNGLFGELAAAWEQVIR 159

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LKTTLI 212
             P  +    +   ++    + +E V  +   + +     +F +++P  TL   L     
Sbjct: 160 LQP--QPCEVVLSGQQIQGMMPSEIVLLVQHQVRLFESEGTFTVVLPASTLEPVLPRLNA 217

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            +   N     S  +I     +  ++++ +   +   + T+++++ L+ G V+       
Sbjct: 218 RVLFANPRRATSPQVIADLMAQLEEVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVS 277

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +    +  +    G+ G++  IRI   +  D
Sbjct: 278 FPLAVYVENEPCFYAFPGQRGRSLAIRIAGTLTED 312


>gi|325527237|gb|EGD04619.1| flagellar motor switch protein FliM [Burkholderia sp. TJI49]
          Length = 220

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 45/163 (27%), Gaps = 2/163 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
            + + L       M    +IS +  +  K+S    +       +   +            
Sbjct: 60  RFARLLRIGIFNFMRRTAEISVSQVKVLKYSEFTRTLPIPTNLNLVHVKPLRGTSLFVFD 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            NLV  +++NL G       ++  R  +  E+++  R +  +         + +      
Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGRLLNLVFEHYTTAWKSVRPLQFEF 179

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                            NE V     ++          + +P 
Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGKLHICMPY 220


>gi|163784305|ref|ZP_02179215.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880423|gb|EDP74017.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 263

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 82/243 (33%), Gaps = 4/243 (1%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +S       +F+  +        ++  S+     N  +   + LV T++  L G      
Sbjct: 17  VSQNDIYITRFNDFMLKIPLPASYTIISMKPLKENSLLVLDSRLVFTIISVLFGG-PPKP 75

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
            ++  R  + +E K+    I  +                 ++       L +  +   +E
Sbjct: 76  FKVEGREFTKLEIKVINDFIKAVLETFESVWEQIYPIKIEMKSIELNPNLARIVS--PSE 133

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
            V  + +++ I+   +      PQ   L       S   + E       +    K +++ 
Sbjct: 134 KVIVVELSIDIDGYEAPMFFCFPQNMFLPIKDFIYSEVTQFEE-DVAWKNYLLEKVHKIK 192

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  +   +KD++  K G  +       T   +    K  +  +LG+  + + ++
Sbjct: 193 VKLWVELFKETYKVKDILEWKEGTKLETKISTDTLLKVYIEDKPKFLGKLGKKKEKFAVK 252

Query: 300 ITD 302
           I D
Sbjct: 253 IKD 255


>gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
           43160]
 gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
           43160]
          Length = 321

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 99/285 (34%), Gaps = 16/285 (5%)

Query: 2   RGQSIHKNTSPLH-PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           R +     T     P  L+R        + ++    +        L  + +    L    
Sbjct: 17  RSRRGEPRTYDFRRPTKLSR-----EHVRVLQIAQEAFARQTTTVLTTMLRAGARL---- 67

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                +   +   + S  +    +  ++   +    +    ++ +  ++++LG S     
Sbjct: 68  ELLGIEQHSYDDYVASLPDPCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGSADQ 127

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
              +R ++ +E  +    + ++ + L    S   E  P L +      L +  +   ++ 
Sbjct: 128 --PDRPMTVMETAITNHLLGRLLSELAGSFSHIIELQPELSEIEYNPQLAQAAS--GSDT 183

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQL 238
           V   +  + I + +    L++P  +       + S Q     Q++     +    +  Q+
Sbjct: 184 VMVASYTIGIGSRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQV 243

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
            V++  R    + + +D+++L +G V+   H +     ++ N   
Sbjct: 244 PVDVGVRFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVT 288


>gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
 gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
          Length = 321

 Score =  106 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 110/320 (34%), Gaps = 28/320 (8%)

Query: 8   KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
           K+ S L P  L RL         +E+ +  L     +             V +++   + 
Sbjct: 18  KSASELEPSKLHRL------AAIVEETAEELTLALNRLSID--------KVAVTFRDFEM 63

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
           G+ +  I    ++ +F+  +   +    ++     L    +    GA      +   R+L
Sbjct: 64  GQGADGIGDAGDDVLFATLTSKRFGRPAYLAAPETLADVCISAYFGAKPAE--RAGKRAL 121

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
           + +++ L K T            +   E+      F + + L +     +     ++   
Sbjct: 122 TDLDRALVKTTFKTFVETFASAFAPIDEAGLAAGGFVECEELDELLGGPNAGRYVSMTFG 181

Query: 188 MT-IENVA--------SSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
           ++   + +        S+  L +P    +L +  L       +  +  E   +   R   
Sbjct: 182 LSKAGDRSATAEEEPLSTLTLALPSSYLSLHRRVLSEPLPLPQP-SPDETWSEAMVRNFE 240

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +  ++++  +  K+  L +V   ++GQ +           L   GK I+  ++G    +Y
Sbjct: 241 KSGLHLEAVLARKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSY 300

Query: 297 TIRITDRINFDQKSLKNFLH 316
             R  + ++  Q+ +   L 
Sbjct: 301 VARFEEAVDPTQEFINGILS 320


>gi|152990356|ref|YP_001356078.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2]
 gi|151422217|dbj|BAF69721.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2]
          Length = 326

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 88/269 (32%), Gaps = 5/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + K   +  ++ +     +S  S    +F++ + +      ++  ++        +  
Sbjct: 59  ERWVKLFREEVRKVLPKINMVSKESIYITRFNNFMFNIPMPSSYTTFTMRPLKETALLVI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
            + LV T++  + G       ++  R  + +E  + K  I      L +  S        
Sbjct: 119 DSRLVFTVISVMFGG-PAKPFKVEGREFTKLETYVIKDFIDIALESLQEVFSAVYPVDVE 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
                    L + T+   NE V      + I+   +      P    L    I  S    
Sbjct: 178 KRSIELNPALARITS--GNEKVIISECIVDIDGFEAPIYFCFPHGMFLPIKEIIYS--EF 233

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
                            Q NV +   +  +   ++DV+  K G  +     ++  A L  
Sbjct: 234 QGEIDPVWKRRVNEILLQTNVEVALELPKQTYLMRDVLQWKEGMELILDIEKEEDAYLRI 293

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           + K  + C++G++ + Y   + +    ++
Sbjct: 294 SDKYKFRCKVGKIKEKYAALLKNEHQEEE 322


>gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
          Length = 323

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 9/268 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +F   + L   IS    +   F     S       + + +     N  I  
Sbjct: 59  ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
               +  L ++  G     +P       +  E+++ +    +++  L          +  
Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDLMALTFT 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218
           +    +        +    + V   +  + + N   +SF ++ P +T LK     L S+ 
Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+   +D    +   R    + + +  R+   +  L+ ++ ++ G V+P    E     
Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--AVS 292

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           L   G+ I+    G  G    + +T R 
Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 323

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 9/268 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +F   + L   IS    +   F     S       + + +     N  I  
Sbjct: 59  ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
               +  L ++  G     +P       +  E+++ +    +++  L          +  
Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDLMALTFT 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218
           +    +        +    + V   +  + + N   +SF ++ P +T LK     L S+ 
Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+   +D    +   R    + + +  R+   +  L+ ++ ++ G V+P    E     
Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--AVS 292

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           L   G+ I+    G  G    + +T R 
Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|254446496|ref|ZP_05059972.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198260804|gb|EDY85112.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 338

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 95/269 (35%), Gaps = 5/269 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + ++L       + L+  +  +   +  +S    +           +        I  
Sbjct: 71  EEFIRYLAARLSIFLRLEYSLKMSRLSTLTYSKFTETIPNPAHVVLFKIEQLFGVGVIDI 130

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
           +  L +T+++ +LG    ++     R L+ +E  L    +  +     +   + QE    
Sbjct: 131 NPRLALTMVDRMLGGKGHSVQ--GERYLTEIETNLVDDVVGIVLEEWCRQWKSEQELDTT 188

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           +   ++ +     T+  ++  +  ++M   + + + +  + +P  TL         ++ K
Sbjct: 189 II-GHESNGRFLETS-PADAIMLVLSMEAGVGDCSETIQIGLPYYTLEPIIKRMHEAKEK 246

Query: 220 SENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
                       +     Q+++ +    + +  T K+V+ L+ G VI F         + 
Sbjct: 247 DLGMDLTQAESSWQSSFNQIDIPVQAEWDGQTLTTKEVMNLRPGDVIRFPKTVLKDTRVR 306

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +    ++ E+G       +++  ++  +
Sbjct: 307 LSNSIKFTGEVGLENDRVAVKLDKKLEEE 335


>gi|291562030|emb|CBL40846.1| Flagellar motor switch protein [butyrate-producing bacterium SS3/4]
          Length = 363

 Score =  105 bits (262), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 111/294 (37%), Gaps = 11/294 (3%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           KI  S+   Y + L         +  DI+    Q  ++   +++  EN   +    S   
Sbjct: 58  KILRSVFENYARILTSQINGIFRVMTDITVLDVQERRYYEYVNALHENDCMTMIDASIAG 117

Query: 93  SN-----FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                    +  +  +VITL+ ++LG       +   R  S VE+ L KR +  ++  L 
Sbjct: 118 EEKMSVPLMLFVTPGMVITLINHMLGGEDVVAVEDDYR-YSDVERALYKRIVEYMTGALK 176

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIPQETL 206
              S     + ++E   +   + ++     +E V  I +N+ I   A     + +P   L
Sbjct: 177 DGFSNYVSIAFSVEHVEENPTMVQDVGL--DETVAIIILNVDISGQAQEKVKICLPGNLL 234

Query: 207 LKTTLISLSSQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                   + ++ +   S +D  +          + I  ++   +  LK +  +++G VI
Sbjct: 235 TVIFHSIDNRKHLARGFSYQDNKEKIMDNIRYSKLPITGQLGTVQLDLKGLYQIQVGDVI 294

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKNFLHKR 318
                + +   L    +  ++ ++G   KN  ++I   I    ++   + + ++
Sbjct: 295 DLGKPKDSPVRLFVGRQPWFTGQMGCYKKNVAVKIEKCIASQIEEKKTDIMPQK 348


>gi|296274406|ref|YP_003657037.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM
           7299]
 gi|296098580|gb|ADG94530.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM
           7299]
          Length = 364

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 103/297 (34%), Gaps = 23/297 (7%)

Query: 37  SLGYLYKKFLPKIFK---EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
           +   L+ K L  +       +   VDI   S +   +   I S  +    +  S+     
Sbjct: 56  AFSTLHDKMLRDLITDLSAMLRKIVDIKLYSIEQMTYGEFILSIPQLTSLNTLSIKPLDG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I C+  +   ++  LLG+         +R L+ +E ++       I + L +     
Sbjct: 116 RIVIECNPGISHKIIAELLGSGSVASTDNLDRELTEIEVEIFDHFYKLIVSHLYKAWDEI 175

Query: 154 QESSPNLEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQE---TL 206
              +        I+    N N +     +E V  + +  TI+  +    +  P     TL
Sbjct: 176 TTLNFK------IESRDTNANAIQIISDHEIVLLVVLEFTIDEESGFLSICYPISYIETL 229

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L   +  + ++ +++  S               +NI+  +        +++ LK G VI 
Sbjct: 230 LNKIVTKIFAEGRNKKASRK--KDITTLISGAKMNIEAIMAETFLKTSEILDLKEGDVIV 287

Query: 267 FLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ----KSLKNFLHKR 318
           F     +    L  N KE +    G       ++I   I+ ++    ++L+    +R
Sbjct: 288 FNKNSTSATSKLYINKKEKFLAISGLSNNRKAVQIKANIDHEKMETLETLRGMREER 344


>gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
 gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
          Length = 323

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 9/268 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +F   + L   IS    +   F     S       + + +     N  I  
Sbjct: 59  ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
               +  L ++  G     +P       +  E+++ +    +++  L          +  
Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDLMALTFT 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218
           +    +        +    + V   +  + + N   +SF ++ P +T LK     L S+ 
Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+   +D    +   R    + + +  R+   +  L+ ++ ++ G V+P    E     
Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--ALS 292

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           L   G+ I+    G  G    + +T R 
Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|213419486|ref|ZP_03352552.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 153

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 1/152 (0%)

Query: 59  DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
           DI+  + +   +     +       +   L        +  S +LV   ++NL G     
Sbjct: 1   DITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRF 60

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
             ++  R  +  E+++  R +       +                 ++     N     N
Sbjct: 61  PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPN 119

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           + V     ++ I N+   F + +P   +    
Sbjct: 120 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 151


>gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 323

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 9/267 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +F   + L   IS    +   F     S       + + +     N  I  
Sbjct: 59  ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
               +  L ++  G     IP       +  E+++ +    +++  L          S  
Sbjct: 119 PPPFISLLTDSYYGGQIRHIPTTRT-EFTATEQRVIELVTDRLNVALQVAWRDLMALSFT 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218
           +    +        +    + V   +  + + N   +SF ++ P +T LK     L S+ 
Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+   +D    +   R    + + +  R+   +  L+ ++ ++ G V+P    E     
Sbjct: 235 QSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLTE--AVS 292

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303
           L    + I+    G  G    + +T R
Sbjct: 293 LLVENEPIFEGVPGERGGQAALNLTRR 319


>gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
           DSM 13479]
 gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
           DSM 13479]
          Length = 295

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 98/282 (34%), Gaps = 21/282 (7%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           T+E +  S       +L  + +       +IS T     ++    +S  +  +F   +L 
Sbjct: 20  TVENLYDSFARALAPYLTGLMQSY----CEISVTGIVERRYQEFSNSVPDRSLFGMITLI 75

Query: 90  S-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                   +   +     L   ++E LLG +        +R  + +EK + +  + +I+ 
Sbjct: 76  PDNKDYNEAPLVLEVDTRLAFFMIERLLGGAGTEYEL--SRDFTDIEKAILQYLLGKITE 133

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            +        +    L       +L +       + V  + + + I+ +++   L++P  
Sbjct: 134 FIGDSWKEYLDVDAALTGLQTNPHLLQV--SAPEDVVIQVELEVRIDQLSAVLNLVMPAP 191

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVT 258
            + +  L S      + +Q +D     A++        +  V +    +      +D++ 
Sbjct: 192 NVEE--LTSKFGYTYAVSQKKDEAKQLAKRGYIEQHLLESEVELRAIFHEFSLDAQDILQ 249

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           L+ G V+P   +  +   +       +   LG       + I
Sbjct: 250 LQPGDVVPLNKKVDSSIDIYVEDIACFEARLGHTKLRKAVEI 291


>gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides]
          Length = 323

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 90/268 (33%), Gaps = 9/268 (3%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +F   + L   IS    +   F     S       + + +     N  I  
Sbjct: 59  ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
               +  L ++  G     +P       +  E++  +    +++  L          +  
Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERCIELVTDRLNVALQVAWRDLMALTFT 177

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218
           +    +        +    + V   +  + + N   +SF ++ P +T LK     L S+ 
Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234

Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           +S+   +D    +   R    + + +  R+   +  L+ ++ ++ G V+P    E     
Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--ALS 292

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
           L   G+ I+    G  G    + +T R 
Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320


>gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
 gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
          Length = 395

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 103/285 (36%), Gaps = 9/285 (3%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA--SLS 89
            ++  S+   Y + L            DI+    +  ++   +++F EN   +     + 
Sbjct: 65  IRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIVDTYVQ 124

Query: 90  SWSSN---FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
               +        S  L +TL+ ++LG S   I    +   + VE  L KR +  I   L
Sbjct: 125 DKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIVHAL 184

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIPQET 205
               S    +   +        + +      +E V    MN+ I  +A     + +P   
Sbjct: 185 GDGFSNYISAEFKIAKIETNPSMVQEVGL--DETVVLAVMNVDISGLAMERIRICLPGTL 242

Query: 206 LLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           L     I  + ++ +     E+  D         +  +  ++ + K  ++D+  LK+G V
Sbjct: 243 LEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLKVGDV 302

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           I     + +   L    +  ++ ++G   KN  IRI DRI     
Sbjct: 303 IDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRIIQKDD 347


>gi|289806356|ref|ZP_06536985.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 154

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 1/150 (0%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           +    DI+  + +   +     +       +   L        +  S +LV   ++NL G
Sbjct: 6   LRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFG 65

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R  +  E+++  R +       +                 ++     N 
Sbjct: 66  GDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNI 124

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
               N+ V     ++ I N+   F + +P 
Sbjct: 125 TTSPNDIVVNTPFHVEIGNLTGEFNICLPF 154


>gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter
           versatilis Ellin345]
          Length = 329

 Score =  102 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 96/283 (33%), Gaps = 11/283 (3%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           +++ +  IS SL   + + L       + +  + +  S +   +  ++    E   +S  
Sbjct: 47  NREQVRSIS-SLHEGFARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTF 105

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            + +  +   +    +L   +++ LLG       Q+  R ++ +E+++ +     +   L
Sbjct: 106 RIGTADNIGAMEMDLSLAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKEL 163

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL---IIPQ 203
                         E       L++       E +  +   + +     S  L    +  
Sbjct: 164 ETAWQPL-GMEFAFEARQQAAQLQRL--MPPTEKILALCFELEMPGCRGSLNLAFSAVVS 220

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             LL+        + +S     D      RK       +   +      +++++ L+ G 
Sbjct: 221 NALLRKLSKDWGYRRQSRESDGD--GKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGD 278

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           ++P     ++   LS  G+  +     R G     +I  RI+ 
Sbjct: 279 ILPLKRSAESAIELSVGGRASFRARPVRSGNWRAAQILGRIST 321


>gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
           15053]
 gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
           15053]
          Length = 336

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 110/287 (38%), Gaps = 15/287 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K ++ I  + G L    L  + +       ++   S +  ++    +   EN V    +L
Sbjct: 52  KLLKGIYDNYGRLASSRLNGVLRTA----CEMEVLSVEEQRYFEFSNILSENDVMMMLNL 107

Query: 89  ----SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                S +    I  S  L++ +++ +LG + +      + + S +E  L K+ +  +  
Sbjct: 108 KLPDESKNPPMMIHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLD 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
           +         + +   +   +   L +  +   +E V  + +N+ ++N+     + IP  
Sbjct: 168 ITRDAWGNYIKINLGDQRLEENPGLFQEISL--DEPVAIVLLNVKMQNIDGRITICIP-G 224

Query: 205 TLLKTTLISLSSQNKSENQSED----LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            LL      +  +   +   ++      +    +  +  + I   +   + ++K+V  LK
Sbjct: 225 NLLMNIFNIIDKRKHVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLK 284

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +G VI      ++  +L    +  +  +LG   KN  ++I   I  +
Sbjct: 285 VGDVIDLNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE 331


>gi|182412236|ref|YP_001817302.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1]
 gi|177839450|gb|ACB73702.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1]
          Length = 351

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 84/278 (30%), Gaps = 9/278 (3%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           + + +  +           L    + ++ L          +  ++    S          
Sbjct: 65  ELRRLRLLHEDFIRYLAARLSLYLRMELGL----KMAKLTTATYAKFTDSLPSPTHLCLF 120

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
            +        +  +  L +T+ + LLG           R L+ +E  L +  +  +    
Sbjct: 121 KVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEIEIALLEDVVNIVLEEW 178

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
                T QE  P +    +     +      +  V  + +     + +    + +P  T+
Sbjct: 179 CTQWKTEQELRPQIIGHENNGRFLQT--SPKDAIVLILTLEANFGDCSEQIQIGVPYYTI 236

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                   + + K    S        +  Y+ + V +    +    +L++VV+L++G V 
Sbjct: 237 EPVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAMDISLREVVSLRVGDVF 296

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
                      +  N    +   +G       +++T +
Sbjct: 297 ELPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRK 334


>gi|322432979|ref|YP_004210228.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9]
 gi|321165206|gb|ADW70910.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9]
          Length = 321

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 96/286 (33%), Gaps = 12/286 (4%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T+  +  +L       L       +   +++     +         +          S
Sbjct: 35  ARTLTTVHETLARN----LTNSLDVYLGTGLEVRLIHLEQFSMEDFKATCMSAAYMLPCS 90

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
               S+   +   ++L+ T+++ LLG S +       R L+ +++++ +   + I+  + 
Sbjct: 91  AKPSSNTLLLEMDSSLMFTVIDLLLGGSGKNPES--ARELTEIDEEIMEGVGSLIAQQIE 148

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           +           L     +     +      E V  I+  +++  V  +  +   Q ++ 
Sbjct: 149 RAWQPVG---FVLTPGKCVKPNLAHRVFPPTEKVLRIHFEVSVAGVTGALYIAF-QASMA 204

Query: 208 KTTL--ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              +  I   S  K+       +    ++       +   I   K  ++D+  +++G V+
Sbjct: 205 SHLVRNIRADSTGKTGGVVYMPLPKLQKRILDCQFALSGDIPNLKVPVRDLARIEVGSVL 264

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                      L+  GK  Y     R G N  +++ + I+     +
Sbjct: 265 MLSAPVSMPGKLTLEGKTYYEALPVRQGNNKAMQLMNAIHSKHTDV 310


>gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium
           cellulosolvens 6]
 gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium
           cellulosolvens 6]
          Length = 368

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 11/271 (4%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSS 90
           K+  S+   Y + L            DI+    +  ++   ++SF EN   +     +  
Sbjct: 56  KLLRSIFENYARILTSQVNGIFRTMTDITVMELRESRYYEYVNSFHENDCMTIIDTVMPE 115

Query: 91  WSSN---FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                    I  +  L++TL+ ++LG   + I    N   S VE  L KR +  I   L 
Sbjct: 116 KGKFSVPMMIYVTPGLILTLMSHMLGGGEQVISTEENYRYSDVEMSLYKRILEYIIHALG 175

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIPQETL 206
              S         +   +   + +      +E V  +++N+ +  +AS    + IP  TL
Sbjct: 176 DGFSNYLTVDFRPQKVEENPSMIQEVGL--DETVVLVHLNVDVTGIASEKIRICIP-GTL 232

Query: 207 LKTTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           L+    ++ ++          +  +       +    +  ++   + T++D+  L++G V
Sbjct: 233 LEQIFRTIDNRKHIARGFTYSNNSEVIMSHLKETKFPLTAQLGTVRLTMEDLYRLQVGDV 292

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           I     +     L    +  +   +G   KN
Sbjct: 293 IDMNKSKDATLSLFVGKQPWFKGTMGVHHKN 323


>gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
 gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
          Length = 335

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 90/265 (33%), Gaps = 19/265 (7%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + +    +F   +     +S  S +   ++  I S   +   +  S              
Sbjct: 70  FCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDSLDASTYLTSFSAEPLFDRGVFEIPL 129

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
             V+T ++++LG           R L+ +E  +A   I ++   L   +++     P ++
Sbjct: 130 LAVMTCVDHMLGGPGRLEQ--PERPLTEIEAGVASGMIERLLGELRYSMASIVAFEPVVK 187

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-------TTLISL 214
                    +     +++ +   ++ + I +      + +P  +LL           +S 
Sbjct: 188 GVEYSPQFVQVAG--ASDVMVAASLELRINDRTFRMTMCMPFSSLLPHLLRAAAPAPVSE 245

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREK 272
             + +    + +L D F R      V ++  ++L+ TTL   ++  L+ G  +   H   
Sbjct: 246 RERAQRAQAAAELADQFQR------VPVEVAVSLRPTTLSPMELAALRPGDALRLRHPAA 299

Query: 273 TCAILSANGKEIYSCELGRVGKNYT 297
               +  +G        G  G    
Sbjct: 300 APLEVVVDGTCFAHATPGTSGFRLA 324


>gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
           SRS30216]
 gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
           SRS30216]
          Length = 314

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 83/259 (32%), Gaps = 8/259 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
           + +    +    +   V +     Q   +     S     V +            +    
Sbjct: 49  FCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASLPMPTVMAVFDPEPLVGAAVLHMDM 108

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
             V++ +E +LG +         R L+ +E  LA+  + +    L   + T  +  P L 
Sbjct: 109 AFVLSCIERMLGGTGHNAQ--PERQLTDIEAVLARGMVERTLVELASSLVTVTDLKPKLT 166

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                          + + +   + ++ ++ VA +  L +P +  L T L +   +  S 
Sbjct: 167 AID--QNPAFAQAAAATDVMIVSSFHLEVDGVAGTATLAMPLDP-LSTALTAAELRVASP 223

Query: 222 NQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            +      + D        + V +  R+   +    +++ L  G V+   HR      + 
Sbjct: 224 EELRIRRLMRDRLDDHLEHIPVEVSVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVV 283

Query: 279 ANGKEIYSCELGRVGKNYT 297
           ++   + S   G  G    
Sbjct: 284 SSDAHVASAVAGSRGAKLA 302


>gi|90415345|ref|ZP_01223279.1| flagellar motor switch protein FliM [marine gamma proteobacterium
           HTCC2207]
 gi|90332668|gb|EAS47838.1| flagellar motor switch protein FliM [marine gamma proteobacterium
           HTCC2207]
          Length = 330

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 73/252 (28%), Gaps = 9/252 (3%)

Query: 60  ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +     +  KF   +         +   L+            ++V   L+N  G      
Sbjct: 81  VGMGDVKIMKFGEYLRDLSAPLSVNTIRLNPLRGYSMAVIEPSIVFAALDNFFGGFGRGF 140

Query: 120 PQ-LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            +    R  +  E  + K  +  +   L +  +     + N E        +       N
Sbjct: 141 DKLPPGRLFTPTETSIIKIMLDVLFGSLKEAWAPI--LAINCEHVNSEINPQFAQIADEN 198

Query: 179 EFVTTINMNMTIE-NVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARK 234
           + V        +  N++ +  L+ P  +L          + + +  +   ++        
Sbjct: 199 DLVVVSRFGADLGRNISGNIDLVYPYNSLKPIRDLLRSRVQTGDGDDISDKEWSAELQSA 258

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                + +   +   +TTL     +  G ++ F   E     +  N   ++  ++G  G 
Sbjct: 259 AVDAELEVTVELGEIETTLSKFEAMSEGDIVYFSKSEHARVYV--NSVPVFDADVGANGS 316

Query: 295 NYTIRITDRINF 306
               RI   +  
Sbjct: 317 QMAARIIKPLAP 328


>gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
           11B]
 gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
           11B]
          Length = 314

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 80/265 (30%), Gaps = 5/265 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +    + +   +   + +   +   + S       +  SL        +  
Sbjct: 46  ETFCRQFTTVLTSTLGVFSLVELVAVEQMSYVDYVESLPTPTFLALISLDPLQGTGILQL 105

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
                +  ++ +LG           R  + VE ++ K    +    L        + SP+
Sbjct: 106 PLETAMLCVDRVLGGPGSAQQPT--RLPTDVETEIMKMVTRRAVQELRYAFEGLVQVSPD 163

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           +          +    + ++ V   ++ + + +   +  L+IP   L      + S +  
Sbjct: 164 VIGIETNPQFAQA--AVPSDIVVVASLEIKVGDQDGAATLMIPFTGLYPVLEAAASPKRG 221

Query: 220 SENQSEDLID-PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
                 +        +   + + +  +      T  +++ L +G V+   H      +++
Sbjct: 222 DRRDLLERSQAALRARLEDVEIEVAVQFPYVALTPHELLNLSVGDVLSLRHPTNAPLLIT 281

Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
           A G        G  G+     + + 
Sbjct: 282 AEGIPFAYAVPGSNGRQAACLVVEP 306


>gi|262273545|ref|ZP_06051359.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
 gi|262222523|gb|EEY73834.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
          Length = 296

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 94/278 (33%), Gaps = 14/278 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
            TI+ +      L K+    I +      V+ +Y    +      + +  E  ++ + ++
Sbjct: 33  ATIDNVCKQFETLAKQAFQHILR----CPVEFTYQQQHTETLQDHLKAMGEQSLYREFTV 88

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           S    N  +     L   L++   G       +    ++S  E ++  R   Q+      
Sbjct: 89  SPHHFNGVLVIEKELQFLLVDLFFGGKGIVKART---TISDTEWRMMARFFGQMLDQYAI 145

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
              +       L+   ++D       R  ++        M +        + +P   L  
Sbjct: 146 AWQSVSPWQCQLQPKENLDL---ENTRQDSQLHQICRFTMNVCGHQGWIDISLPLNGL-- 200

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             L    + +     + +L         +  + + + +  ++ +L D++ LK+G VIP  
Sbjct: 201 DFLRHRHATDDDAATAPELQHIVNATLKKAPIRLLSTLCERQLSLGDIMALKVGDVIPVE 260

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +   ++ A    +++ ++        +++ + I  
Sbjct: 261 LPGE--VVVRAGRTPLFTAKVAEQNATLVLQVQNVIEQ 296


>gi|54307255|ref|YP_128275.1| hypothetical protein PBPRA0018 [Photobacterium profundum SS9]
 gi|46911675|emb|CAG18473.1| Hypothetical protein PBPRA0018 [Photobacterium profundum SS9]
          Length = 296

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 86/258 (33%), Gaps = 9/258 (3%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
            F   +   V+ S+    + K    +   K+  ++ + ++S    +  +     L+  ++
Sbjct: 48  SFHHLLRHPVEFSFDQQDTLKLQDYLQQLKKPCLYREFTVSPHDLHGTVSIDGELLFFMV 107

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           +   G +   I +  +  +S  E +L +R     +  L Q        +       + + 
Sbjct: 108 DLFFGGNGNNIRRNND--MSDTELRLVERFF---NLALEQFAHGWHSITSWHNHLTEKNT 162

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
           L+      +N+        + +      F + +P   L         + +       +L 
Sbjct: 163 LRLGNPMQNNQLYQVCRFTIDVCGHKGWFEIALPFAGLDFLRDQQCKAAD--IETDPELQ 220

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
                K  Q  + + T +  +   L  V+ LK G +IP      +   + A    +++  
Sbjct: 221 AKIQTKICQTPMRLTTTLCERSLALGKVMDLKTGDIIPVELP--SEVTVRAGKTSLFTAR 278

Query: 289 LGRVGKNYTIRITDRINF 306
           +     +  ++I   I  
Sbjct: 279 IAEHNASLVLQIQSIIKQ 296


>gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP]
          Length = 165

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---- 230
             S+E V  I   ++   V     L  P  ++++     L++Q+  + + +++ +     
Sbjct: 25  VPSSEMVLAITFFVSFGKVEGYMSLCWP-SSVIEPIGEKLTTQSWFKVKQKEITEEHIEK 83

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                 +  +++   I     TL +++TL++G VI           +  NG+  +  + G
Sbjct: 84  LKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIRLKEHYDEPIRVEVNGRTKFLGKPG 143

Query: 291 RVGKNYTIRITDRINFDQK 309
           +   NY ++IT+ I   ++
Sbjct: 144 QYKGNYAVKITEVIEEPKE 162


>gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
 gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
          Length = 315

 Score = 97.0 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 18/312 (5%)

Query: 2   RGQSIHKNTSPLH-PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           R +           P+ LAR  G     +  E    +    +   L      ++ + V +
Sbjct: 17  RQRPAQPEAYDFRRPMTLAREHG-----RAFEMAFETFARQWGTQL----TSRLRVMVGV 67

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
                +   +   +     +      S+ +  S   +  ++   +  ++ +LG     + 
Sbjct: 68  GLDGVEMVSYDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGG-PGLVR 126

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF-YDIDYLKKNTNRLSNE 179
           +   R L+ +E  L    ++   A L             ++   Y+  +++      ++E
Sbjct: 127 EELPRELTEIETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQYNPQFVQA---APASE 183

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI---DPFARKTY 236
            V      +T+    ++  L+IP + LL           +S+++  +     D   R   
Sbjct: 184 AVIVATFTLTVAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMS 243

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + V++  R+       +DVV L +G+VI   H       +  +G  +     G  G+  
Sbjct: 244 TVPVDVHVRMRPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQL 303

Query: 297 TIRITDRINFDQ 308
             +I D    D+
Sbjct: 304 ACKIVDSEGEDR 315


>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
 gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
          Length = 320

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 9/301 (2%)

Query: 12  PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
           P  P +    T  +   + + ++       +   +  +    + +       S +   ++
Sbjct: 24  PGDPEVFD-FTRPVKLPRELLRVLQLCYETFSHRMATLLTSTLRVVCHAELISIEQLSYA 82

Query: 72  HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
             +       + +   L        +  + +  +T +++LLG      P    R LS +E
Sbjct: 83  EHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGGKGGPQP---ARPLSDIE 139

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             L +  + Q    L   + +  +  P LE        +        + V      + + 
Sbjct: 140 TPLLRDLLDQALEQLRVGMESVADVRPELEGLEY--NPQLVQTSTPTDAVVVGYFELNVG 197

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINL 248
                  L IP +T+L +          S +     E   +        + V +  +   
Sbjct: 198 EEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAITAGLQNVPVAVSVKFQS 257

Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            +    D+V L+ G VIP  HR      + A G+   +    + G      +    + ++
Sbjct: 258 VRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVATKRGTRLACLVVAGADSEE 317

Query: 309 K 309
            
Sbjct: 318 N 318


>gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
 gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
          Length = 309

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 73/264 (27%), Gaps = 6/264 (2%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
               +        ++ +   +++   +   +                ++        +  
Sbjct: 41  QRVARQFATQLTARLRVVSQVTFEDLELRTYDEYTGGLPTPTAMVMCAMEPSRQTAVLQI 100

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
                +  ++ L G       +   R L+ +E  L +  +      L    +     S  
Sbjct: 101 PVGATLVWIDYLFGGDGRGDER-EGRELTDLEWTLVRDLLQHAIGDLEYSFAGVTPMSAT 159

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           +          +     + E V      + +         ++P + LL     S  +  +
Sbjct: 160 VRSVQYNPQFAQVV--AAQETVLVAVFLLRVGEREDRMTFMLPSDLLLGALRSSEGADAR 217

Query: 220 SEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           SE     +        R    + V++  +        +DVV L +G V+P  H       
Sbjct: 218 SEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDVVNLTVGDVLPLSHPSSEPLD 277

Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
           +  +G  +     G  G     ++
Sbjct: 278 VVVDGIVLARAAAGSHGSRLACQV 301


>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
           DSM 13965]
          Length = 321

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 88/271 (32%), Gaps = 10/271 (3%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T+  +  ++  L   FL    +  +++ V     +     +   I       V +  +L
Sbjct: 33  RTLAMVHENVARLATGFLSGQLRTVVEVAVLEVEET----TYGEFITGLSNPTVLAVFNL 88

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
               S+  +    ++   +++ L             R L+ +E  + +  +  +   + +
Sbjct: 89  PPLESSAVMDVEPSIAFPMVDRLF--GGPGTGAATGRGLTEIETVVMRAILQGLLGSVAE 146

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S   +    L              +  NE V  + +++       ++ + +P   L  
Sbjct: 147 GWSQLVQVQGELVTVA--ANPLFVQVQAPNEIVVRVVLSVRFGQQEGAWRICLPYPLLEP 204

Query: 209 TTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                   Q  +          + +     Q+ + +   +   + T++ ++ L  G V+P
Sbjct: 205 LLPRLAVHQYYARETRSQARSREQWEEGLRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLP 264

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYT 297
              R  +   +   G+  +    G+ G+   
Sbjct: 265 LDTRAGSLVDILVGGRLKFRGLPGQHGQRLA 295


>gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter
           woesei DSM 14684]
 gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter
           woesei DSM 14684]
          Length = 322

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 91/263 (34%), Gaps = 4/263 (1%)

Query: 41  LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100
           ++ +        ++ + +++   +     +S          + +   ++   +   +   
Sbjct: 60  MFCQTAAARLTAELRVPLELEVINTTQLTWSAAQQQLPPASLGTPLEVAPHDTRMLMTAE 119

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
              V+  +E LLG + E  P+   R LS ++  L+KR    ++  L+         +   
Sbjct: 120 LPFVLMAIEYLLGGAPERPPR--QRKLSEIDWVLSKRLFETLTTQLSIVWQDLAGQTLAA 177

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
           ++      ++       +E   TI +   I   +S+  L+IP  ++            ++
Sbjct: 178 QEVDSH--VEGMQVAAISEPTLTITLESRINRHSSTLALLIPWVSIDPVADQIAGRDLRT 235

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                             +V +   +   +  + DV+ L  G ++          ++ A 
Sbjct: 236 RADDPRAAALVQAALSGAHVTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAE 295

Query: 281 GKEIYSCELGRVGKNYTIRITDR 303
              I+  + GR G    ++I DR
Sbjct: 296 DVPIHHAQPGRSGARRAVQIVDR 318


>gi|56551539|ref|YP_162378.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761177|ref|ZP_04759266.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752861|ref|YP_003225754.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543113|gb|AAV89267.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241374796|gb|EER64257.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552224|gb|ACV75170.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 332

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 19/295 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           + R+ G       +E+I+  L    +  +    + +      ++        F       
Sbjct: 55  IVRMAG-------LERIAEKLARRLRLIIEPFARART----QVTVDGVDIHHFEKWRRDL 103

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            E    S   L+       I      +  L++   G +    P    +  +  E++L  R
Sbjct: 104 PEFVSISLYRLAPLKGGAMIVMDPQFITGLVDAFYGGTGIVTPSRA-KEFTPAEERLLVR 162

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASS 196
               I+  + +  S   +                     ++E V      +   N  A+ 
Sbjct: 163 LSDTIADSVVESWSDVVQLQSQFLSRETNGAYVTMI--RNDEAVVVQRFTIVPGNGRAAR 220

Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
             ++ P+ TL    +   +   + +    E+           + + I T +   + T+  
Sbjct: 221 ISIVYPRATLRPFEMHLDTKVHDDAGPADENWTKRMRLAASAIPIPIKTILARPQITMGQ 280

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  LK+G+VIP    E+   I  A  K+I    +G       + I +++  + + 
Sbjct: 281 LKNLKVGEVIPIEMPEQLPLI--AGTKKIAYGSIGDRDGKTALLI-EKLEEEPEI 332


>gi|225872620|ref|YP_002754077.1| putative flagellar motor switch protein FliM [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793214|gb|ACO33304.1| putative flagellar motor switch protein FliM [Acidobacterium
           capsulatum ATCC 51196]
          Length = 316

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 6/266 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
           SSL  L+ + L       + +   I   S +   F   +    +    +   L    +  
Sbjct: 52  SSLNDLFARNLGINLGAWLGMQCRIQLVSAEQIPFEEFVMRGADLSFIASLRLEPLRAVA 111

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +      V ++++ LLG   +       R L+++E+ +    +  I   L+    +   
Sbjct: 112 ILQMELAPVPSMIDALLGGIGQPGEV---RELTSIEEAIVAHVVELICRELSSAWQSIGL 168

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
           S             +        E    ++  + + + +    + +P             
Sbjct: 169 SFYFESRQMQTQMARL---LPIKERALCLSFEIRLPSASGLLHIALPAVVSNTVLRSLRG 225

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
             +  +  SE+          +++V    ++   +  ++++  L+ GQV+ F    KT  
Sbjct: 226 DLHPQKEHSEETRAKMRGLVKKVSVGTALQLAPARIPMRELEGLEAGQVVVFPVTAKTRP 285

Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301
            L   G  ++     R G+     I 
Sbjct: 286 ELLVAGVPLFQAVPVRSGERRAAHIE 311


>gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
 gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
          Length = 327

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 87/264 (32%), Gaps = 7/264 (2%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L   + + L +  +    ++  +   +      +  + S +     S  +LS  +   F 
Sbjct: 56  LVERHAEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAGPVFA 115

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
               +L+  ++    G       +    +L+  E +LA+R      + +           
Sbjct: 116 IAPADLLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDKLPLE 175

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
               +   +    +     ++E +  I   ++  + +S+  +++P    L+      +  
Sbjct: 176 A--GEINTLGMPDRLEMLPASEMLLRIAFTLSAGDFSSALSVMLPFAA-LEPYRERFAPP 232

Query: 218 NKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            K ++  E       F R+   + + +   +  +   L D++ L+ G VIP         
Sbjct: 233 RKQDDVFEGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPL--APAEQV 290

Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299
            L  +   +     G       ++
Sbjct: 291 SLKVDNVTLAEGRYGSFDGVKAVQ 314


>gi|149200770|ref|ZP_01877745.1| Flagellar switch protein FliM [Roseovarius sp. TM1035]
 gi|149145103|gb|EDM33129.1| Flagellar switch protein FliM [Roseovarius sp. TM1035]
          Length = 325

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 11/271 (4%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + +    +F   + +   IS    +   FSH     +     + A + +  SN  I  
Sbjct: 62  ERFCRLARPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSNQLIML 121

Query: 100 SNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
             N V  L     G           R   +  E ++ +     I   L            
Sbjct: 122 PPNFVSLLTNAYYGG--NIAYLPGGRAEFTASETRVIEIVTKGIYRALEAAWRDLIPLDF 179

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQ 217
              +    D L+  T   S E V   +  + +     ++  LI P +  LK     L S+
Sbjct: 180 A--NPVHEDNLQFATFVESEEKVVCCSFIIQLPEADPATLDLIYPLQA-LKPIAARLRSR 236

Query: 218 NKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
            +S+  ++D             + +N+  R+      +  +  L+ G+V+P         
Sbjct: 237 MQSDQVADDLRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLT--LRP 294

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            L   G  ++  E G       + +T RI  
Sbjct: 295 QLLVEGTPLFDAEPGAQNGRAALSLTRRIEP 325


>gi|254437125|ref|ZP_05050619.1| flagellar motor switch protein FliM [Octadecabacter antarcticus
           307]
 gi|198252571|gb|EDY76885.1| flagellar motor switch protein FliM [Octadecabacter antarcticus
           307]
          Length = 326

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 103/287 (35%), Gaps = 11/287 (3%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
           LGD   +  I+     L +     + + +      I+    +   F      F      +
Sbjct: 47  LGDYYALRVINERFARLARTVFQPMLRVQPR----ITALPPEVKTFDEYCKEFPTLMCLT 102

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
            + ++    +  +      + TL     G       +      ++ E ++ +     +S 
Sbjct: 103 TSRINELRGSKMMVIQPEFISTLTNAYYGGVLGQKYKPST-EFTSTESRIIEIVTEGLSR 161

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L          + + E   +        +      + +  + +  EN A  F ++ P +
Sbjct: 162 NLLIAWQDLMPLTFSDESREENLQFASFVDGEETVIICSFTIELPQENKA-KFDILYPLQ 220

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIG 262
           T LK     L S+ +SE   +DL      +     V +   + L K   +L+ ++ ++ G
Sbjct: 221 T-LKPIAAQLRSRMQSEVVDDDLTWRERLERAVTEVRLTVNVQLSKPRISLRQLIEVQKG 279

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            V P     +    +  +G+++++ ++G +     I IT+++N +Q 
Sbjct: 280 DVYPIQL--RDGLSVLVHGQKMFAADIGEIAGFNAITITEKLNQNQT 324


>gi|254517014|ref|ZP_05129072.1| Surface presentation of antigens protein [gamma proteobacterium
           NOR5-3]
 gi|219674519|gb|EED30887.1| Surface presentation of antigens protein [gamma proteobacterium
           NOR5-3]
          Length = 327

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 91/261 (34%), Gaps = 5/261 (1%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
               + L    +    ++  +   + +    +  + S + +   + +SLS  +   F   
Sbjct: 58  ERQAEMLGVALESGFSIEFTVLAQTPELLSVADAVASLERSVAVTNSSLSPLAGPVFAIA 117

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              L+  ++    G            SL+  E +LA+R      + ++Q  +   + +  
Sbjct: 118 PAELLSFVVNAYFGGGSAAPSDSSRSSLTPTELRLAERIAEFQLSSISQAWTD--KLALE 175

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
             +   +    +     S++ +  I  +++    +S   L++P   L       L  + K
Sbjct: 176 AGELTTLGVPDRLEMLPSSDMLLRIAFSLSAGEFSSQISLMLPFAALEPYRERFLPPRKK 235

Query: 220 SENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            E       +P F R+   + + +   +  +   L D++ L+ G VIP   +      L+
Sbjct: 236 DEVSDGKSWEPFFRRELPGIELEVAGVLATQSIALADLLQLQAGMVIPI--KPPEEVRLN 293

Query: 279 ANGKEIYSCELGRVGKNYTIR 299
            +   +     G       ++
Sbjct: 294 IDNVTLAEGRYGSFDGVKAVQ 314


>gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
 gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
          Length = 331

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 83/267 (31%), Gaps = 9/267 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +     + L  + +        +     ++ +F     +  ++   S   +        +
Sbjct: 63  MNERIARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLFRVRPVKGMMMV 122

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
               + V  +++   G +            +  E++L +R    I  VL +  S T    
Sbjct: 123 AVEPSFVTNMVDAFYGGTGN-GLTTKGGEFTPSEQRLQRRLTDAIVEVLTRVWSDTFPLQ 181

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISLSS 216
            +                 ++E V   +  +    + ++   ++ P   LL+     +++
Sbjct: 182 FDFSTHETNAAFANMV--RADEPVVVQSFTIKPGMSRSTRVEILYPLS-LLQPIEDQIAA 238

Query: 217 QNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           + +  ++    +           + + + + +   + ++  ++ LK G VIP    +   
Sbjct: 239 RTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVNLSQ--T 296

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             L    +      +G       + I 
Sbjct: 297 VPLLVGNRRFAEGTIGEQDGRAALMIE 323


>gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter
           chlorophenolicus A6]
          Length = 298

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 76/248 (30%), Gaps = 9/248 (3%)

Query: 50  FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
              K+ +    +        +     S           +    S   +       +  + 
Sbjct: 49  LTAKVRVKSSATLEQLSMQSYDEYAASLPSVTSMVLCRIDGSESRLVLQFPATAALAWIS 108

Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
            +LG S +    +  R  + +E  L +R +      L   + +   ++P   D    +  
Sbjct: 109 RMLGGSGD--ADVPERKFTQIEHALVRRMVEDSLEDLKYSLGSLL-AAPLAMDVVQYNSQ 165

Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229
                      +     ++ +  + S+  L IP + LL                + D   
Sbjct: 166 FAQAAAPGELMIVA-TFSVQVGELPSAATLAIPADVLLPGL-----GAVNPTAPTADAGA 219

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
               +  Q+ V++  ++     T   ++ L +G V+P  H E +   ++ NG  + +   
Sbjct: 220 LVRAQVAQVPVDVAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLATAAP 279

Query: 290 GRVGKNYT 297
            R G    
Sbjct: 280 ARNGSRAA 287


>gi|320107039|ref|YP_004182629.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4]
 gi|319925560|gb|ADV82635.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4]
          Length = 326

 Score = 89.3 bits (220), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 92/283 (32%), Gaps = 7/283 (2%)

Query: 33  KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
           +   ++   + + L       +      +  + +   FS  + +  E    +   L    
Sbjct: 31  RALHNMQDQFARNLTHTLGAWLRTSFIANLVATEQKLFSGFLATVPEAAYVASLRLEPLG 90

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
            +  +    NLV  +++ LLG S         R L+ +E+ +       I+   N     
Sbjct: 91  VHGALLIDLNLVSPIVDLLLGGSGRAGEV---RDLTEIEEAILFSVSEMIAREFNVAWQA 147

Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
                   E       L++    +  E    +   + +     + V  IP  +L      
Sbjct: 148 -SGIHFATEKREREGQLQRLMGYV--EKTLCMTYEVVMPEARGNLVFCIPAVSLSSILRK 204

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            +S +++   +S +       +  Q   ++  +    +    +++ +++GQV+       
Sbjct: 205 MISQRDRPRRRSSESRLRVEDRIVQSRFSVALQFPQMRLGAHEIMEMQVGQVVRLPLPRN 264

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI-TDRINFDQKSLKNF 314
           T A L       +     R G++   ++ T ++        + 
Sbjct: 265 TMAELRVGAVTAFRAHPVRAGEHRAAQVGTGQVPPANHITPHM 307


>gi|229058412|ref|ZP_04196796.1| Flagellar motor switch protein [Bacillus cereus AH603]
 gi|228719921|gb|EEL71511.1| Flagellar motor switch protein [Bacillus cereus AH603]
          Length = 328

 Score = 88.9 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 98/283 (34%), Gaps = 14/283 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                   ++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTPSDIISLLNVNMKTEFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTIGEIEKIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            +IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|229017049|ref|ZP_04173968.1| Flagellar motor switch protein [Bacillus cereus AH1273]
 gi|229023230|ref|ZP_04179740.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|228738024|gb|EEL88510.1| Flagellar motor switch protein [Bacillus cereus AH1272]
 gi|228744222|gb|EEL94305.1| Flagellar motor switch protein [Bacillus cereus AH1273]
          Length = 328

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 95/276 (34%), Gaps = 10/276 (3%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFSQASLSSW 91
            ++   + K   + F  +M + +++  ++ +   F S  +    +++         L   
Sbjct: 57  QAIASTFGKQTSQTFSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVIDLGLPEL 116

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                I      VI + E  LG           R L+  E        A +   L Q   
Sbjct: 117 -GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCKNLQQSFE 174

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-- 209
           +     P                  +++ ++ +N+NM  +   ++  + IP  ++ +   
Sbjct: 175 SVVAIKPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSVEEIMD 232

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G +IP   
Sbjct: 233 KLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDIIPLHT 292

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +         +GK  ++C +G+ G    +     I 
Sbjct: 293 KVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|225159021|ref|ZP_03725331.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2]
 gi|224802400|gb|EEG20662.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2]
          Length = 344

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 82/237 (34%), Gaps = 7/237 (2%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
              S                    +  +  L +T+++ +LG          +R L+ +E 
Sbjct: 110 FTESLPAPSHICLFKADPLPGIGVLTINPRLALTIVDRMLGGRG--HSVTADRHLTEIEI 167

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
            L +  +  +            E  P +    +     + + R  +  +  + +++   +
Sbjct: 168 ALLEDMLTLLLEEWCIQWKAGPELHPQIVGHENNGCFLQTSAR--DAVMLVLALDVNFGD 225

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKK 250
              +  L +P   +++T +  L +    +N      D    K    ++ +  R    + +
Sbjct: 226 CTGALNLAVPYY-MIETVVRDLQACRHQDNAPAARPDATGWKPVYEHIALPVRAEWPVFE 284

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +L+++ +L++G V+           +   G E ++  +G  G    ++I  ++   
Sbjct: 285 ASLREIASLRVGDVLELPAGILDDTRVLLAGAEKFTGTVGVEGDRVAVKINRKLPTR 341


>gi|229011056|ref|ZP_04168250.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
 gi|228750228|gb|EEM00060.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
          Length = 328

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 101/283 (35%), Gaps = 14/283 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG        L  R L+  E        A +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFLMRRPLTAFEFLTLDNIFALLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLQQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            +IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|300975540|ref|ZP_07173051.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1]
 gi|301050694|ref|ZP_07197555.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1]
 gi|300297617|gb|EFJ54002.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1]
 gi|300410309|gb|EFJ93847.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1]
          Length = 178

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 146 LNQCISTTQESSPNLEDFY------DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
           L   +    ++   +          ++     N     N+ V     ++ I N+   F +
Sbjct: 2   LKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI 61

Query: 200 IIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
            +P   +     L+       S N+ ++  D   R+     + +          L  ++ 
Sbjct: 62  CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 121

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           LK G V+P         I   +G  + + + G +   Y +RI   IN 
Sbjct: 122 LKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 167


>gi|229029443|ref|ZP_04185526.1| Flagellar motor switch protein [Bacillus cereus AH1271]
 gi|228731902|gb|EEL82801.1| Flagellar motor switch protein [Bacillus cereus AH1271]
          Length = 328

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E        A +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321


>gi|163939573|ref|YP_001644457.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis
           KBAB4]
 gi|229166618|ref|ZP_04294370.1| Flagellar motor switch protein [Bacillus cereus AH621]
 gi|163861770|gb|ABY42829.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis
           KBAB4]
 gi|228616872|gb|EEK73945.1| Flagellar motor switch protein [Bacillus cereus AH621]
          Length = 328

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 99/283 (34%), Gaps = 14/283 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   +  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            +IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 323

 Score = 86.2 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 101/285 (35%), Gaps = 10/285 (3%)

Query: 24  KLGDKKTIEKISS--SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
             G+  T+ K S    L   + + L  +          I   +    +   +I +  +  
Sbjct: 40  GAGEALTLSKWSELDGLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARVGDLIPAMSDRI 99

Query: 82  VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
                 +        +    + +  L+    G S    P+L  +  +  E++L+++    
Sbjct: 100 ALITTEIKPLEGESHLEFPGDFLSFLVNQYFGGSTVASPKLAGKV-TPSEQRLSEQLAKD 158

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200
           +   L +  S      P   D Y      + +   ++     +  ++    +    F L+
Sbjct: 159 VLRTLVEVWSDRLALEP--GDLYVDITTDRLSLLPADMGYVVLTYSVACGSDYQGEFRLL 216

Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           +P E++      L+    +        +          +++V +   ++L +T+L++++ 
Sbjct: 217 LPYESMALQAPRLMPARREEPEVVVEPEWEARLQSAVPEIDVELCGVVSLLETSLRNLLA 276

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            K+G VIP    +   A L   G+ I   + G    +  ++ITD 
Sbjct: 277 FKVGTVIPIDEPQ--TAQLMVEGRGIARGKYGAHDSSRAVQITDF 319


>gi|229132591|ref|ZP_04261439.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
 gi|228650823|gb|EEL06810.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
          Length = 328

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 99/283 (34%), Gaps = 14/283 (4%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   +  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            +IP   +         +GK  ++C +G+ G    +     I 
Sbjct: 286 DIIPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328


>gi|206974807|ref|ZP_03235722.1| putative flagellar motor switch protein FliM [Bacillus cereus
           H3081.97]
 gi|229195975|ref|ZP_04322728.1| Flagellar motor switch protein [Bacillus cereus m1293]
 gi|206746826|gb|EDZ58218.1| putative flagellar motor switch protein FliM [Bacillus cereus
           H3081.97]
 gi|228587534|gb|EEK45599.1| Flagellar motor switch protein [Bacillus cereus m1293]
          Length = 328

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +D+  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E        A +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLMNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +         +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKAL 321


>gi|196039000|ref|ZP_03106307.1| putative flagellar motor switch protein FliM [Bacillus cereus
           NVH0597-99]
 gi|301053301|ref|YP_003791512.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|196030145|gb|EDX68745.1| putative flagellar motor switch protein FliM [Bacillus cereus
           NVH0597-99]
 gi|300375470|gb|ADK04374.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 328

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     I   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELIGYVDGKHKFNCFIGKDGTRKAL 321


>gi|118477197|ref|YP_894348.1| flagellar motor switch protein FliM [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863621|ref|YP_002748999.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB102]
 gi|229121315|ref|ZP_04250546.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
 gi|229183955|ref|ZP_04311170.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|118416422|gb|ABK84841.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786262|gb|ACO26479.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB102]
 gi|228599480|gb|EEK57085.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
 gi|228662160|gb|EEL17769.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
          Length = 328

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|324325781|gb|ADY21041.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 328

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQSLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E        A +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|196033337|ref|ZP_03100749.1| putative flagellar motor switch protein FliM [Bacillus cereus W]
 gi|195993771|gb|EDX57727.1| putative flagellar motor switch protein FliM [Bacillus cereus W]
          Length = 328

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFTLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229160725|ref|ZP_04288717.1| Flagellar motor switch protein [Bacillus cereus R309803]
 gi|228622740|gb|EEK79574.1| Flagellar motor switch protein [Bacillus cereus R309803]
          Length = 328

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 101/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQALS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        +      VI + E  LG   +       R L+  E        A I  
Sbjct: 110 DLGLPEL-GEIVVEIDLAFVIYIHECWLGGDSKRT-FTMRRPLTAFEFLTLDNIFALICK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  QL   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKRYTSEVEVKVNQLYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDQLLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|294013062|ref|YP_003546522.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S]
 gi|292676392|dbj|BAI97910.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S]
          Length = 294

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 81/268 (30%), Gaps = 9/268 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           LG    + L  + +        +     ++ +F    H    +       L+       +
Sbjct: 26  LGEKLGRRLRALIEPIAGARPHVVAQDARALEFGAWAHEVPGSASIGVYRLAPLKGQVLL 85

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                ++ TL++   G              +  E +L  R      A L +C S      
Sbjct: 86  RLDAEMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISEAFIARLVECWSDMLALE 144

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS 216
             L        +         E +      ++I   A     L+ P  + L+     + +
Sbjct: 145 AGLIVRET--GIGFAAAAQPGEQMVLQRFLISISRDAEWPIDLLFPLSS-LRAVEPLMGN 201

Query: 217 QNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +   +++  D +     A++  ++ +   T +     +L +++ LK G +IP        
Sbjct: 202 RIPVDDERADPVWQARIAQRMREIRLPARTVLARPDLSLAELMQLKAGDIIPV--TINRS 259

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302
             L    + +    +G        +I  
Sbjct: 260 LPLIVGDRIVAHGSIGEQDGRAAFQIEK 287


>gi|196045129|ref|ZP_03112362.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB108]
 gi|196024131|gb|EDX62805.1| putative flagellar motor switch protein FliM [Bacillus cereus
           03BB108]
          Length = 328

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ D+  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGDIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|300117313|ref|ZP_07055103.1| flagellar motor switch protein FliM [Bacillus cereus SJ1]
 gi|298725148|gb|EFI65800.1| flagellar motor switch protein FliM [Bacillus cereus SJ1]
          Length = 328

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +D+  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E        + +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFSLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|42780856|ref|NP_978103.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987]
 gi|217959246|ref|YP_002337794.1| flagellar motor switch protein FliM [Bacillus cereus AH187]
 gi|222095386|ref|YP_002529446.1| flagellar motor switch protein flim [Bacillus cereus Q1]
 gi|229138463|ref|ZP_04267052.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
 gi|42736776|gb|AAS40711.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987]
 gi|217068243|gb|ACJ82493.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH187]
 gi|221239444|gb|ACM12154.1| flagellar motor switch protein FliM [Bacillus cereus Q1]
 gi|228645000|gb|EEL01243.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
          Length = 328

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +D+  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E        A +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321


>gi|49477321|ref|YP_035882.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|218902877|ref|YP_002450711.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH820]
 gi|228914341|ref|ZP_04077956.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926799|ref|ZP_04089867.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933047|ref|ZP_04095910.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228984848|ref|ZP_04145018.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090726|ref|ZP_04221959.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|254723848|ref|ZP_05185634.1| flagellar motor switch protein FliM [Bacillus anthracis str. A1055]
 gi|49328877|gb|AAT59523.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|218538906|gb|ACK91304.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH820]
 gi|228692668|gb|EEL46394.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
 gi|228774798|gb|EEM23194.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228826648|gb|EEM72419.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832912|gb|EEM78481.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845335|gb|EEM90371.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 328

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229155334|ref|ZP_04283444.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
 gi|228628049|gb|EEK84766.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
          Length = 328

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium
           chlorophenolicum L-1]
 gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium
           chlorophenolicum L-1]
          Length = 299

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 80/268 (29%), Gaps = 9/268 (3%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           LG    + L  + +    +   ++    ++ +F        ++       L+       +
Sbjct: 26  LGEKLGRRLRALIEPIAGVRPHVAVHDARALEFGAWNAEVPDSSSIGVYRLAPLKGQVLL 85

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
                ++ TL++   G              +  E +L  R      A L +C S      
Sbjct: 86  RLDATMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISDAFMARLVECWSDMLTLD 144

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS 216
             L        +         E +      ++I   A     L+ P    L+     + +
Sbjct: 145 AGLIVRET--GVGFAAAAQPGEQMVLQRFMLSISRDAEWPIDLLFPLSA-LRNVEGLMGA 201

Query: 217 QNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +   +++  D I     A +   + +   T +     +L +++ LK G VIP        
Sbjct: 202 RIPIDDERADPIWQARIAARMRDIRLPARTVLARPDLSLAELMQLKAGDVIPV--TINRS 259

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302
             L    + +    +G        +I  
Sbjct: 260 LPLIVGDRIVAHGTIGEQDGRAAFQIEK 287


>gi|68164513|gb|AAY87242.1| predicted flagellar motor switch protein [uncultured bacterium
           BAC17H8]
          Length = 321

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 100/283 (35%), Gaps = 13/283 (4%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
           LGD   +  I       + +    +F   + +   IS    +   F       +     +
Sbjct: 48  LGDYHALRII----NERFARLARSVFLPMLRIQPRISSFPPEVKTFDEYTAGIENFMSLN 103

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
            + +     N     + N +  L  +  G     +P   +   +  E+++ +     ++ 
Sbjct: 104 ISRIEELRGNMLSVMTPNFISVLTNSYYGGKITALPSKKS-EFTATEERIIELVTDGLNE 162

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203
            L              ++           +    EFV   +  + + +  A+SF +I P 
Sbjct: 163 TLQVAWRDLMPIKITYQNREINPQFASFVD--GAEFVIICSFVVQLPDTDAASFDIIYPL 220

Query: 204 ETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           +T LK     L S+ +++   ++    +   R    + + +  R+     ++ +++ +++
Sbjct: 221 QT-LKPIAAQLRSRLQADVAEDNHTWREKMERAVLNIPLPVTARLGQPVVSMYNLINMQV 279

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           G   P    E     +  + ++ +  +LG VG N  + +  R+
Sbjct: 280 GDTFPITIGE--GVEVRIDTEDAFIGDLGDVGGNAAVNLKSRL 320


>gi|152975177|ref|YP_001374694.1| flagellar motor switch protein FliM [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023929|gb|ABS21699.1| flagellar motor switch protein FliM [Bacillus cytotoxicus NVH
           391-98]
          Length = 328

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 99/275 (36%), Gaps = 14/275 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I++S G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIAASFGKQTSQSLA----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      +I + E  LG   +    +  R L+  E        + +  
Sbjct: 110 DLGLPEL-GEIVIEMDLAFIIYIHECWLGGDSKRDFSIR-RPLTAFEFLTLDNVFSILCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+N+  E   ++  + IP  
Sbjct: 168 NLEQSFESIVAIQPKFVTTET--DPNALKITTASDIISLLNVNLKTEYWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++      L S +    S ++ +        K +Q+   I   +  +K T+ ++  ++ G
Sbjct: 226 SVEDIMDKLTSENIVEHSSDKRKKYTSEVEAKVHQVYKPIHIALGEQKMTIGELEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
            +IP   +         +GK  ++C +G+      
Sbjct: 286 DIIPLHTKVTDQLCGYVDGKHKFNCFIGKDKTRKA 320


>gi|47565432|ref|ZP_00236473.1| flagellar motor switch protein (fliM), putative [Bacillus cereus
           G9241]
 gi|47557422|gb|EAL15749.1| flagellar motor switch protein (fliM), putative [Bacillus cereus
           G9241]
          Length = 328

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +D+  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E        A +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|213612309|ref|ZP_03370135.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 147

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 3/143 (2%)

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQ 223
           ++     N     N+ V     ++ I N+   F + +P   +     L+       S ++
Sbjct: 3   EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHE 62

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
            ++  D   R+     + +          L  ++ LK G V+P         I   +G  
Sbjct: 63  DQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVP 120

Query: 284 IYSCELGRVGKNYTIRITDRINF 306
           + + + G V   Y +R+   IN 
Sbjct: 121 VLTSQYGTVNGQYALRVEHLINP 143


>gi|52143697|ref|YP_083133.1| flagellar motor switch protein FliM [Bacillus cereus E33L]
 gi|228945366|ref|ZP_04107721.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|51977166|gb|AAU18716.1| flagellar motor switch protein M [Bacillus cereus E33L]
 gi|228814338|gb|EEM60604.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 328

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLRTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35243]
 gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
           28-1]
 gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35239]
 gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
 gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35243]
 gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
           28-1]
 gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
           35239]
 gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
          Length = 307

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 74/233 (31%), Gaps = 9/233 (3%)

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           +   I               +  +   +       +  +++LLG   + I    +R L+ 
Sbjct: 67  YDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGD-IESTPDRQLTE 125

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-SNEFVTTINMNM 188
           VE  +    + ++   L+   +        L    +++Y  +       +  +    + +
Sbjct: 126 VEVSILSDFLKRVMMDLDMAFAGMLPLETKL---LNLEYAPQFVQAYDGSTPILFAPITL 182

Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSED---LIDPFARKTYQLNVNIDT 244
           T         +++P   +        + +  +SE Q  +   +         ++ V +  
Sbjct: 183 TTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVEVAV 242

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           R + +K   +++  L +G  +P +H       L  +   +     G  G    
Sbjct: 243 RFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLA 295


>gi|84514809|ref|ZP_01002172.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53]
 gi|84510968|gb|EAQ07422.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53]
          Length = 320

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 100/285 (35%), Gaps = 15/285 (5%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
           LGD   +  I+     L +     + + +  +   +     +   F     +       +
Sbjct: 47  LGDYYALRVINERFARLARTVFQPMLRVQPRITALMP----EVKTFDQYCENAPVLMSLT 102

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQIS 143
            + +     +  +      +  L     G       +   R   +  E ++ +     ++
Sbjct: 103 TSRIDELRGSKMMVIQPGFISALTNAYYGGD--LGLRYQPRAEFTATETRVIEIITEGLN 160

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202
             L        + + + E     + L+  +    +E V   + ++ +     +   ++ P
Sbjct: 161 RTLLAAWQDLMQLTFSDESRE--ENLQFASFVEGSETVIICSFSVQLPKADDARIDILYP 218

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLK 260
            +T LK     L S+ +SE   +D+      +     V +   + L K   +L+ ++++ 
Sbjct: 219 LQT-LKPIAAQLRSRMQSEVIDDDMTWRERLERAVSEVRLPINVQLSKPRVSLRQLISIT 277

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            G V P   RE     +   G++++  ++G V     I IT +++
Sbjct: 278 KGDVYPIQLRE--GLSVMVQGQKMFFADIGEVAGTSAITITQKLD 320


>gi|103488406|ref|YP_617967.1| surface presentation of antigens (SPOA) protein [Sphingopyxis
           alaskensis RB2256]
 gi|98978483|gb|ABF54634.1| surface presentation of antigens (SPOA) protein [Sphingopyxis
           alaskensis RB2256]
          Length = 312

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 75/268 (27%), Gaps = 7/268 (2%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+   + + L  + +      V +  +  +   F+          +F +          
Sbjct: 43  ESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEW-SGAAAPAIFWRYHAPPLKGPL 101

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I  +  L++ L++   G   +   +     L+  E + A R    I   +         
Sbjct: 102 LIAAARPLLLQLVDIFYGGRGQLGGEREE--LTDAEDRFAARLGRDIGMQIAAAWRDKLV 159

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
             P L D    D  K    R  +E                +     P   L       L 
Sbjct: 160 IEPEL-DCVTGDPAKLAAVRADDELFVQRFTLRGAPLDGRTIACAYPVAALRGIAGDELL 218

Query: 216 SQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
              +  N           +    + + + + +   + +L  ++ L++G +IP        
Sbjct: 219 PDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMPRHVP 278

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302
             +   G+      +G    N  I I  
Sbjct: 279 VTV--AGRSFAFGSIGEANGNAAILIDH 304


>gi|229096248|ref|ZP_04227221.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
 gi|229115203|ref|ZP_04244613.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|228668343|gb|EEL23775.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
 gi|228687208|gb|EEL41113.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
          Length = 328

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ D+  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSDIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|229172409|ref|ZP_04299968.1| Flagellar motor switch protein [Bacillus cereus MM3]
 gi|228610880|gb|EEK68143.1| Flagellar motor switch protein [Bacillus cereus MM3]
          Length = 328

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLA----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWDTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  ++ T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQRMTMGEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|254461418|ref|ZP_05074834.1| flagellar motor switch protein FliM [Rhodobacterales bacterium
           HTCC2083]
 gi|206678007|gb|EDZ42494.1| flagellar motor switch protein FliM [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 324

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 11/269 (4%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
             +   + +    +F+  + +   IS        F             S + +     + 
Sbjct: 56  RVINERFARLARSVFQPMLRVQPRISAQLPTVQTFDEYSKDSPSLMSLSTSRIDELRGSK 115

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRS-LSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +      +  L     G   E   +   RS  +  E ++ +     ++ VL        
Sbjct: 116 MMVMQPEFISALTNGYYGG--ELGLKHALRSEFTATETRVIEIITNGLNDVLLTAWQDLM 173

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLIS 213
             S +     +        +    + +      + +    S +  ++ P +T LK     
Sbjct: 174 PLSFSEHAREENLQFASFVD--GGDTIIVCKFTVQLPKAESATLDILYPLQT-LKPIAAQ 230

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHRE 271
           L S+ +S+   +DL      +   + V++   + L K   +L+++V L+ G V P   + 
Sbjct: 231 LRSRMQSDVIEDDLTWRERLEQAVMQVSLPMNVQLSKPKVSLRELVELEAGDVFPIQLK- 289

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRI 300
            T   +  +G+E++  ++G V     I I
Sbjct: 290 -TGLGVMVHGQEMFVADIGEVAGTSAITI 317


>gi|75763360|ref|ZP_00743098.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896697|ref|YP_002445108.1| putative flagellar motor switch protein FliM [Bacillus cereus
           G9842]
 gi|228900345|ref|ZP_04064574.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|228907396|ref|ZP_04071254.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228938876|ref|ZP_04101476.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228964747|ref|ZP_04125854.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971757|ref|ZP_04132378.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978366|ref|ZP_04138743.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|229043519|ref|ZP_04191228.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|74489151|gb|EAO52629.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542394|gb|ACK94788.1| putative flagellar motor switch protein FliM [Bacillus cereus
           G9842]
 gi|228725741|gb|EEL76989.1| Flagellar motor switch protein [Bacillus cereus AH676]
 gi|228781383|gb|EEM29584.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
 gi|228787847|gb|EEM35805.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794997|gb|EEM42496.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228820725|gb|EEM66750.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228852257|gb|EEM97053.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
 gi|228859232|gb|EEN03663.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
 gi|326939376|gb|AEA15272.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 328

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++          K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRRKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|228920473|ref|ZP_04083818.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229069314|ref|ZP_04202604.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|229109219|ref|ZP_04238818.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|229178171|ref|ZP_04305542.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|228605301|gb|EEK62751.1| Flagellar motor switch protein [Bacillus cereus 172560W]
 gi|228674229|gb|EEL29474.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
 gi|228713801|gb|EEL65686.1| Flagellar motor switch protein [Bacillus cereus F65185]
 gi|228839103|gb|EEM84399.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 328

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|228952146|ref|ZP_04114238.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|46019719|emb|CAG25464.1| FliM protein [Bacillus thuringiensis serovar alesti]
 gi|228807500|gb|EEM54027.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 328

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 100/276 (36%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +  +     K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYMSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|30019808|ref|NP_831439.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 14579]
 gi|206970515|ref|ZP_03231467.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH1134]
 gi|218233573|ref|YP_002366448.1| flagellar motor switch protein FliM [Bacillus cereus B4264]
 gi|228958044|ref|ZP_04119779.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229102362|ref|ZP_04233070.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|229127090|ref|ZP_04256087.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|229144376|ref|ZP_04272781.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|229149968|ref|ZP_04278194.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|29895353|gb|AAP08640.1| Flagellar motor switch protein fliM [Bacillus cereus ATCC 14579]
 gi|206734151|gb|EDZ51321.1| putative flagellar motor switch protein FliM [Bacillus cereus
           AH1134]
 gi|218161530|gb|ACK61522.1| putative flagellar motor switch protein FliM [Bacillus cereus
           B4264]
 gi|228633490|gb|EEK90093.1| Flagellar motor switch protein [Bacillus cereus m1550]
 gi|228639007|gb|EEK95432.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
 gi|228656206|gb|EEL12047.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
 gi|228681009|gb|EEL35178.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
 gi|228801561|gb|EEM48443.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 328

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 325

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 13/274 (4%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
             +   + +F   +F   + +   IS    +   F             + + +     + 
Sbjct: 58  RMINERFARFARSVFLPMLRVQPRISSFPPEVKSFDEYAAGIDSFMSLNISRIEELRGSM 117

Query: 96  FIGCSNNLVITLLENLLGA--SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
               S + +  L  +  G         +      +  E+++ +     ++  L       
Sbjct: 118 LTVLSPSFISVLTNSYYGGKIEGNKSRRPE---FTATEERVIQLINRGLNETLENSWRDL 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLI 212
            E + + +            +    + V   +  + + ++ A+SF +I P +T LK    
Sbjct: 175 MEITLSHQSSEVNTQFASFVD--GADLVIICSFVVQLPDIDAASFDVIYPLQT-LKPIAA 231

Query: 213 SLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            L S+ +S+   +D    D   R    + + +  +++    ++  ++ LK G V P    
Sbjct: 232 QLRSRVQSDRIEDDQSWRDRMERAVLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPIQIG 291

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 +  +    Y  E+G VG    I +T RI
Sbjct: 292 --DGVEVLMDEHRFYYGEMGEVGGQSAINLTSRI 323


>gi|229078945|ref|ZP_04211497.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
 gi|228704359|gb|EEL56793.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
          Length = 328

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEIKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|32490802|ref|NP_871056.1| hypothetical protein WGLp053 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166008|dbj|BAC24199.1| fliM [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 319

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 99/279 (35%), Gaps = 5/279 (1%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           K+I +  +++   +  ++ K     +   +DI+     + K+   I  F      +    
Sbjct: 37  KSIIEKLNNVNQKFTGYIKKEITNYIKEPIDITSKEIYTQKYCDFIKDFNTLVSINLIKT 96

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           + + ++  I  +   V  +L+   G +  +  +      S  EK++       I     +
Sbjct: 97  NLFKNDLVIILTTEFVSIILDIFFGGTGNSFGRKNLNEFSISEKRIIDILNKLIINCYQK 156

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
            +      +    +    D   +  N   NE +     N   +N+  +F +I    ++  
Sbjct: 157 SLKD--NINSINLELVTSDTCIQLINFDKNEKIFISKFNFHYKNLKINFFIIFSTFSVEN 214

Query: 209 TTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
             L       N  E +     +    +     + I  +       + D++ L  G++IP 
Sbjct: 215 ENLFYEKKLSNNKEKEQNKWKNKLVNEIKSSKLLIQVKFADLSICVSDLINLNKGEIIPI 274

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +  +K  A +      ++S   G +  +Y +R+ + IN 
Sbjct: 275 VKTKKLTAYVDC--IPVFSGSYGSLNGHYALRVENIINS 311


>gi|229189861|ref|ZP_04316871.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
 gi|228593535|gb|EEK51344.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
          Length = 328

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  E   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGQQKMTMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|207109404|ref|ZP_03243566.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 193

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S+     + L       M   V+I   S     +   + S      F+  S+       
Sbjct: 56  RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 115

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  + ++   +++ LLG          NR  S +E  L    + Q+  +L +  S   E
Sbjct: 116 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 173

Query: 156 SSPNLEDFYDID 167
             P ++      
Sbjct: 174 MFPTIDAKESSA 185


>gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           43063]
 gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           51333]
 gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           43063]
 gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
           51333]
 gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 306

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 73/250 (29%), Gaps = 8/250 (3%)

Query: 52  EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111
            ++ + +           +   I +     +          +   +       +  +++L
Sbjct: 49  GRLHVVITGEVGDLSMRSYDDYIKTLPNQTLMVIIDFQGGRNKGVLQFPRQTALAWVDHL 108

Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
           LG + +      +R L+ VE  +    + ++ A L+    +          F  I+Y  +
Sbjct: 109 LGGTGDVESTP-DRELTEVEVSVLIDFLKRVLADLDIAFQSMLPLD---SQFRTIEYAPQ 164

Query: 172 NTNRL-SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI-- 228
               +  +  V    + +T         +++P   +            ++E Q  +    
Sbjct: 165 FVQVVDGSTPVLFAPITLTAGEHLDDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAV 224

Query: 229 -DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
                     + + +  R   +    +++  L IG  +P +H       L      +   
Sbjct: 225 RQHLVDTLEDVPIGVAVRFTPRNVNPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILAET 284

Query: 288 ELGRVGKNYT 297
             G  G    
Sbjct: 285 AAGTSGSRLA 294


>gi|332187923|ref|ZP_08389656.1| surface presentation of antigens family protein [Sphingomonas sp.
           S17]
 gi|332012084|gb|EGI54156.1| surface presentation of antigens family protein [Sphingomonas sp.
           S17]
          Length = 328

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 90/300 (30%), Gaps = 19/300 (6%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-- 82
            GD  T++ +S+ L    +     + +E++    +         +F+       +     
Sbjct: 32  FGDLHTMQHLSARLARSLRGLFESLLREELRCWAEPLV----VQRFADYRAERGDGLSAW 87

Query: 83  --FSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
              +  S+        +          +++L++   G +    P       S     +  
Sbjct: 88  LPMTMTSIGGPAIQADAKALCVVEGGFMLSLIDLFFGGAGR-APDTLPTEFSPAVDAMIA 146

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
                ++  + Q   +      +         +    +    + +      +  ++   +
Sbjct: 147 HLGDMMATPMRQAWESLARIEFHPGAPESSPAMLAKMD--GEDAMIVTRFGIAGQDRRPT 204

Query: 197 FVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
            + I+     LK    +L+ +  +K             R    +   + + +     +L 
Sbjct: 205 MLDILYPVAALKPHGSALTGKVVDKQAEADPTWRGDLTRAVMTVRFPVRSVLAEPVVSLS 264

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            ++ LK G VIP     +   ++   G  +    +G       +++T      +   +NF
Sbjct: 265 RLMELKTGDVIPISFGPEVPVMV--GGDLLGMGTVGTANGRAAVQLTSLARSAEGLAQNF 322


>gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 334

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 6/274 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           ++       L      +  L + IS       KF+ +              L +      
Sbjct: 55  AINEQVASMLGIGLAGRTRLALRISSAPATLLKFADLAPLLAPPASVCILGLGASYGFAL 114

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYN---RSLSTVEKKLAKRTIAQISAVLNQCISTT 153
                 L   LL   LG      P+      R L++VE+ + +R +  ++  + Q  +  
Sbjct: 115 AVLEAGLAEALLAAALGDRRVRQPEEGGDTRRELTSVEQLVLRRLLRLLADAMTQAWAPV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
               P +        +         +        +    +     L+IP   +       
Sbjct: 175 LPFEPEVLRLEPDPRMASI--APPTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKL 231

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            S +  S+   E   D  AR+  Q+ V I       +     ++ L  G+V+     E  
Sbjct: 232 SSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGR 291

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              +   G+E         G +  + +   +   
Sbjct: 292 PVPVVVQGREKLLGTPTVSGGSLALVVDQPLRPP 325


>gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58]
 gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58]
          Length = 295

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 5/230 (2%)

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
              S   +        +     ++ TL++   G        +     +  E +L  R   
Sbjct: 70  TSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRLIARISE 128

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
            +   + +  +       +L    +         + +++ V    +     +      L+
Sbjct: 129 TLMVRMVESWADVLPLDASLI-LRETGVGYAAAAQPADQMVLQRFVVTLTRDQEWPIDLL 187

Query: 201 IPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            P   L     ++ +     ++Q++       AR+   + +   T +     +L D++ L
Sbjct: 188 FPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSLADLMEL 247

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           K+G VIP         I+    + +    +G        +I        +
Sbjct: 248 KVGDVIPVTIGRALPLIV--GNRIVAHGTIGEQDGRAAFQIEKLAQETDQ 295


>gi|296502364|ref|YP_003664064.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171]
 gi|296323416|gb|ADH06344.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171]
          Length = 328

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 14/276 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
            L Q   +     P                  +++ ++ +N+NM  +   ++  + IP  
Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225

Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           ++ +    L S +    S ++ +        K  Q+   +   I  +K  + ++  ++ G
Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMRMSEIEQIEEG 285

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321


>gi|213615589|ref|ZP_03371415.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 190

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 41/149 (27%), Gaps = 6/149 (4%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
           +  P  P    R+  +      I      +   + +         +    DI+  + +  
Sbjct: 34  DIRPYDPNTQRRVVRERLQALEI------INERFARQFRMGLFNLLRRSPDITVGAIRIQ 87

Query: 69  KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            +     +       +   L        +  S +LV   ++NL G       ++  R  +
Sbjct: 88  PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESS 157
             E+++  R +       +          
Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLE 176


>gi|255026111|ref|ZP_05298097.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-003]
          Length = 300

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 26  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 85

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 86  QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 144

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 145 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 202

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 203 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 262

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 263 TLKGYVTEKWKFECYMGKSGNQKAVK 288


>gi|114794453|pdb|2HP7|A Chain A, Structure Of Flim Provides Insight Into Assembly Of The
           Switch Complex In The Bacterial Flagella Motor
          Length = 183

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
           +T + I  + G     +L    +    +DV+IS        +   I S          + 
Sbjct: 10  RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 64

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
             +  +       +L  T+L+ ++G   E  P   NR  + +E  + ++ +  +  +L Q
Sbjct: 65  DVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLAQ 121

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             S  Q   P++E+       +       NE V  +  +++     S   +  P   LL+
Sbjct: 122 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 178

Query: 209 TTLIS 213
             L  
Sbjct: 179 PLLEK 183


>gi|46906950|ref|YP_013339.1| flagellar motor switch protein FliM [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|217965203|ref|YP_002350881.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|226223330|ref|YP_002757437.1| flagellar switch protein FliM [Listeria monocytogenes Clip81459]
 gi|254824021|ref|ZP_05229022.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-194]
 gi|254853097|ref|ZP_05242445.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           R2-503]
 gi|254932021|ref|ZP_05265380.1| flagellar motor switch protein FliM [Listeria monocytogenes
           HPB2262]
 gi|254994391|ref|ZP_05276581.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-064]
 gi|290893996|ref|ZP_06556971.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-071]
 gi|300764511|ref|ZP_07074504.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N1-017]
 gi|46880216|gb|AAT03516.1| flagellar motor switch protein FliM [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|217334473|gb|ACK40267.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|225875792|emb|CAS04495.1| Putative flagellar switch protein FliM [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606446|gb|EEW19054.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           R2-503]
 gi|290556442|gb|EFD89981.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J2-071]
 gi|293583573|gb|EFF95605.1| flagellar motor switch protein FliM [Listeria monocytogenes
           HPB2262]
 gi|293593249|gb|EFG01010.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-194]
 gi|300514865|gb|EFK41919.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N1-017]
 gi|307570238|emb|CAR83417.1| fliM [Listeria monocytogenes L99]
 gi|313610117|gb|EFR85440.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           F2-208]
 gi|332311124|gb|EGJ24219.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 330

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|16802741|ref|NP_464226.1| flagellar motor switch protein FliM [Listeria monocytogenes EGD-e]
 gi|47095265|ref|ZP_00232876.1| flagellar motor switch protein FliM [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498781|ref|ZP_03667130.1| flagellar motor switch protein FliM [Listeria monocytogenes Finland
           1988]
 gi|224501996|ref|ZP_03670303.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           R2-561]
 gi|254829356|ref|ZP_05234043.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N3-165]
 gi|254830310|ref|ZP_05234965.1| flagellar motor switch protein FliM [Listeria monocytogenes 10403S]
 gi|254900065|ref|ZP_05259989.1| flagellar motor switch protein FliM [Listeria monocytogenes J0161]
 gi|254911382|ref|ZP_05261394.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818]
 gi|254935709|ref|ZP_05267406.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900]
 gi|284801029|ref|YP_003412894.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5578]
 gi|284994171|ref|YP_003415939.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5923]
 gi|315281360|ref|ZP_07870000.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120]
 gi|16410088|emb|CAC98777.1| lmo0699 [Listeria monocytogenes EGD-e]
 gi|47016336|gb|EAL07258.1| flagellar motor switch protein FliM [Listeria monocytogenes str.
           1/2a F6854]
 gi|258601769|gb|EEW15094.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           N3-165]
 gi|258608292|gb|EEW20900.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900]
 gi|284056591|gb|ADB67532.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5578]
 gi|284059638|gb|ADB70577.1| flagellar motor switch protein FliM [Listeria monocytogenes
           08-5923]
 gi|293589319|gb|EFF97653.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818]
 gi|313614999|gb|EFR88503.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120]
          Length = 330

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|328475661|gb|EGF46410.1| flagellar motor switch protein FliM [Listeria monocytogenes 220]
          Length = 330

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKDMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|315301944|ref|ZP_07872945.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596]
 gi|313629686|gb|EFR97818.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596]
          Length = 330

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 96/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L      
Sbjct: 56  TVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGDPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      VI + E L G + +       R LS  E+   K  + +    L +   + 
Sbjct: 116 QIIIELDLAYVIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKESFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
               P +        L + T+   N+ +  +N+++  E   S+  + +P  ++ +     
Sbjct: 175 HPIEPEIVSVETNPALIRVTS--PNDMMALVNVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|289433977|ref|YP_003463849.1| flagellar motor switch protein FliM [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170221|emb|CBH26761.1| flagellar motor switch protein FliM [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313634376|gb|EFS00971.1| flagellar motor switch protein FliM [Listeria seeligeri FSL N1-067]
 gi|313639061|gb|EFS04048.1| flagellar motor switch protein FliM [Listeria seeligeri FSL S4-171]
          Length = 330

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 97/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L      
Sbjct: 56  TVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGDPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      VI + E L G + +       R LS  E+   K  + +    L +   + 
Sbjct: 116 QIIIELDLAYVIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKESFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              +P +        L + T+   N+ +  +N+++  E   S+  + +P  ++ +     
Sbjct: 175 HPIAPEIVSVETNPALIRVTS--PNDMMALVNVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
 gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
 gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 338

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 79/274 (28%), Gaps = 6/274 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           ++       L      +    + I+       KF+ +              L +      
Sbjct: 59  AINEQVASMLGIGLAGRTRQALRITSAPATLLKFADLAPLLAPPASVCILGLGASYGFAL 118

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYN---RSLSTVEKKLAKRTIAQISAVLNQCISTT 153
                 L   LL   LG      P+      R L++VE+ + +R +  ++  + Q  +  
Sbjct: 119 AVLEAGLAEALLAAALGDRRVRQPEEGGDTRRELTSVEQLVLRRLLRLLAEAMTQAWAPV 178

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
               P +        +    +    +        +    +     L+IP   +       
Sbjct: 179 LPFEPEVLRLEPDPRMASIAS--PTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKL 235

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            S +  S+   E   D  AR+  Q+ V I       +     ++ L  G+V+     E  
Sbjct: 236 SSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGR 295

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
              +   G+E         G +  + +   +   
Sbjct: 296 PVPVVVQGREKLLGTPTVSGGSLALVVDQPLRPP 329


>gi|47091661|ref|ZP_00229457.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b
           H7858]
 gi|47019980|gb|EAL10717.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b
           H7858]
 gi|328467265|gb|EGF38345.1| flagellar motor switch protein FliM [Listeria monocytogenes 1816]
          Length = 330

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|16799782|ref|NP_470050.1| flagellar motor switch protein FliM [Listeria innocua Clip11262]
 gi|16413159|emb|CAC95939.1| lin0707 [Listeria innocua Clip11262]
 gi|313624714|gb|EFR94669.1| flagellar motor switch protein FliM [Listeria innocua FSL J1-023]
          Length = 330

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|313620068|gb|EFR91581.1| flagellar motor switch protein FliM [Listeria innocua FSL S4-378]
          Length = 330

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|116872088|ref|YP_848869.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740966|emb|CAK20086.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 330

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFISQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSNLEKFCEALRDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
              SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +     
Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +    + ++  +      ++ +Q+      R+   KTT K++  L++G V+      + 
Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVLLTETHIRD 292

Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299
                   K  + C +G+ G    ++
Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318


>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 467

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 102/301 (33%), Gaps = 21/301 (6%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
           ++R  G L ++      +          L ++F  ++ L V+    S Q    + +    
Sbjct: 60  VSRAQGLLAERLRWLTPADGTAVAVAARLTELFDAEVRLTVE----SVQVRPMAELRRFL 115

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            +    +  +  +      +     L    ++ LLG + ET+     R L+ +E+ +   
Sbjct: 116 GDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGGAGETVGL---RPLTDIEEGVMAY 172

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            + +   +L   +               +D +        +  +  +++  T+   +   
Sbjct: 173 VVLEGLKLLVPGLQAAVPRPRLDGVARGVDEVSARLGD--DGPMLAVHLQATLGPHSGMV 230

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
            L++P   L        S+Q ++  +++  ++ FA +   +   +   I   + + +D+ 
Sbjct: 231 RLVVPAAVLDAAEPAVESTQRRARGKAD--LEAFASRLSAVRSWLRAEIGSAEISGQDLA 288

Query: 258 TLKIGQVIPFLH-------REKTCAILSANGKEIYSCE---LGRVGKNYTIRITDRINFD 307
           +L++  V+            E   A L          E          Y  RITD +  +
Sbjct: 289 SLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWAEAEVFVGEDGRYQARITDFVQGE 348

Query: 308 Q 308
            
Sbjct: 349 P 349



 Score = 39.2 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
               L      +    D  D       Q+ V +  R+     T + VV L+ GQV+    
Sbjct: 376 VPPELEGAALDDVSKPDGSDLLGDVPLQIAVEL-ARV---PVTAQQVVGLRTGQVLELNR 431

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
                  LS NGK +   EL  +     +RI
Sbjct: 432 GPGEPVELSVNGKVVARGELVELEGQLGVRI 462


>gi|255521671|ref|ZP_05388908.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-175]
          Length = 213

 Score = 73.1 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 78/204 (38%), Gaps = 3/204 (1%)

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            I      +I + E L G + +       R LS  E+   K  + +    L     +   
Sbjct: 1   MIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSVHP 59

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
            SP + +      L + T+   N+ +  +++++  E   S+  + +P  ++ +      +
Sbjct: 60  ISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN 117

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
               + ++  +      ++ +Q+      R+   KTT K++  L++G V+      +   
Sbjct: 118 VVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTL 177

Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299
                 K  + C +G+ G    ++
Sbjct: 178 KGYVTEKWKFECYMGKSGNQKAVK 201


>gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile]
          Length = 293

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 53  KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
           ++  +  +   S     +   +     + V  Q ++     NF      ++    ++   
Sbjct: 41  ELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100

Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           G +   + +  +R L+ ++KK+    +  +   ++             E F +I  L  +
Sbjct: 101 GGTG--VVKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147

Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222
           T+            V  +++ +  +N    S  L  P      LL++  +     N   +
Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYNGLEALLESISVIEFFDNDVGD 207

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
            SE+           + +++   I      ++D++ L++G VI    +      +     
Sbjct: 208 DSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267

Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307
           + Y+   G +     ++I D +  +
Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292


>gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
          Length = 293

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 23/265 (8%)

Query: 53  KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
           ++  + ++   S     +   +     + V  Q ++     NF      ++    ++   
Sbjct: 41  ELKCNSNMVVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100

Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           G +   + +  +R L+ ++KK+    +  +   ++             E F +I  L  +
Sbjct: 101 GGTG--VVKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147

Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222
           T+            V  +++ +  +N    S  L  P      LL++  +     N   +
Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYNGLEALLESISVIEFFDNDVGD 207

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
            SE+           + +++   I      ++D++ L++G VI    +      +     
Sbjct: 208 DSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267

Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307
           + Y+   G +     ++I D +  +
Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292


>gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246]
          Length = 283

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 17/281 (6%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
           IE+  ++   L  +   +   + +     +     ++   ++ +  F E  +    +   
Sbjct: 16  IERNVTAWLTLACRRTNEAAVQALRYPATLQIAKVETPSAAYCLAFFPEGAISVPLAPPD 75

Query: 91  W-SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                  +   N ++I LL  L+G + E      +R  + +E  L    + +        
Sbjct: 76  APGGGALLVFPNPVLIALLSGLIGEAPE--ALPADREPTPMESALIPHLVREFF------ 127

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRL---SNEFVTTINMNMTIENVASSFVLIIPQETL 206
           ++   +S P +E              +    NE    +   ++         L++ +   
Sbjct: 128 VTPFLKSWPGVEPLVVDIGAPAAPAAVWTGGNEHNIFVTFTLSAPYGEHPIYLLLTRSG- 186

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                  L++   S   +             ++V +   +     T++DV  L  G VI 
Sbjct: 187 ---RWEQLAAIGLSPPVTPAPKSEIESVVRAMSVEMSVILGRADLTMRDVSDLTTGDVIV 243

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           F  +         +G   +    G VG    + + D I  D
Sbjct: 244 FDQKVTEPLDGLVSGARKFRVWPGVVGDRAAV-VVDTITGD 283


>gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 293

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 53  KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
           ++  +  +   S     +   +     + V  Q ++     NF      ++    ++   
Sbjct: 41  ELKCNSSMIVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100

Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           G +   + +  +R L+ ++KK+    +  +   ++             E F +I  L  +
Sbjct: 101 GGTG--VIKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147

Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222
           T+            V  +++ +  +N    S  L  P      LL++  +     N   +
Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYNGLEALLESISVIEFFDNDVGD 207

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
            SE+           + +++   I      ++D++ L++G VI    +      +     
Sbjct: 208 DSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267

Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307
           + Y+   G +     ++I D +  +
Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292


>gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
          Length = 293

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%)

Query: 53  KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
           ++  +  +   S     +   +     + V  Q ++     NF      ++    ++   
Sbjct: 41  ELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100

Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
           G +   + +  +R L+ ++KK+    +  +   ++             E F +I  L  +
Sbjct: 101 GGTG--VVKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147

Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222
           T+            V  +++ +  +N    S  L  P      LL++  +     N   +
Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYNGLEALLESISVIEFFDNDIGD 207

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
            SE+           + +++   I      ++D++ L++G VI    +      +     
Sbjct: 208 DSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267

Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307
           + Y+   G +     ++I D +  +
Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292


>gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum]
          Length = 155

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS----ENQSEDLIDP 230
              +E V  + +   +          IP  T ++  +  LSSQ        + +   +  
Sbjct: 2   VPPSEMVVLVTLETKVGEEEGMMNFCIPYIT-IEPIISKLSSQFWFSSVRRSSTTQYMGV 60

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCEL 289
              K   +++++   +   + +++D++ L++G +I           +LS   ++ + C+ 
Sbjct: 61  LRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQP 120

Query: 290 GRVGKNYTIRITDRI-NFDQKSLKNF 314
           G VGK    +I +RI +  Q+  +  
Sbjct: 121 GVVGKKIAAQILERIESTSQEDFEEL 146


>gi|299822275|ref|ZP_07054161.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601]
 gi|299815804|gb|EFI83042.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601]
          Length = 330

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 10/268 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF-VFSQASL-SSWSS 93
           +L   + K   +   +++ L +           F S  + +   +  +F    L      
Sbjct: 56  TLSSAFAKKTIEYVSQRIRLPIHTEAMLADQVSFASEYVDTMPNDSYLFCIIDLGDPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              +      +I + E L G + +       R LS+ E+   K  +      L +   + 
Sbjct: 116 QVIVEYDLAFLIYIHECLTGGNAKRKFS-ERRLLSSFEELALKSLVDLSCQALQESFKSI 174

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
               P L        L + T+  SN+ +  IN+++  +   S+  + +P  ++       
Sbjct: 175 HPIEPQLVAVETNPALLRVTS--SNDMMALINIDVKSDYWISTIRVGVPFFSVEYIMEKL 232

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHRE 271
            +    + ++S +  +   ++ +Q  V  D  I +     TL ++  L++G  +      
Sbjct: 233 ENVVEYTFDKSRNFDEEVEQEIHQ--VEKDAIIKVGDIKMTLAELDELEVGDCLLTETHV 290

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIR 299
                   + K  +   +G+ G    I+
Sbjct: 291 NQPLKGYLSNKWKFESYMGKSGTQKAIK 318


>gi|255589689|ref|XP_002535050.1| conserved hypothetical protein [Ricinus communis]
 gi|223524126|gb|EEF27332.1| conserved hypothetical protein [Ricinus communis]
          Length = 104

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 206 LLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           +++    +L +  +S+  +  E  +          +V ++  I  K   L+D++ L+ G 
Sbjct: 1   MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           VIP    EK   +L+ANG  I    LG+   N  ++I ++ + 
Sbjct: 61  VIPVDLGEK--IVLTANGVPIMYARLGQSRGNLALQILEKFDR 101


>gi|10802799|gb|AAG23621.1|AF244672_1 flagellar motor switch protein [Carboxydothermus hydrogenoformans]
          Length = 153

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
            +  ++  L G S +  P++  R L+ +E  + K+   ++   L Q  +   +  P +E 
Sbjct: 2   FIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIEA 59

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222
             +   L +  +   NE V  I     I        L +P E +L   L  LS+      
Sbjct: 60  LENNPRLHQVLS--PNEIVAIITFTTEILGNNGLINLCLPFE-VLDPLLAKLSASYWFSL 116

Query: 223 QSEDLIDPF 231
            +    +  
Sbjct: 117 ATAADREAL 125


>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 441

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 83/229 (36%), Gaps = 9/229 (3%)

Query: 42  YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
             + L    K   D +  ++  S Q   F  +     +    +  +  +      +    
Sbjct: 60  AAEPLYARLKALFDAESRVNLVSVQIRPFQELQRYLGDPSFLAVLAPGALKERVVLEVEL 119

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            L   L++ LLG   ET+     R L+ +E+ +    + +    L   +     S P L 
Sbjct: 120 PLAHNLVDMLLGGVGETVGL---RPLTDIEEGVMSFVVLEALKALAPALDP---SLPKLR 173

Query: 162 DFYDIDYLKKNTNRLSNE-FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
                   ++  +RL  E  V  I++N ++        L+IP   +    L   +++ +S
Sbjct: 174 LETVARGAEEVADRLGEEDRVVVIHLNASLGPHTGLVRLVIPTGVVGAAELAQAAAERRS 233

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           +  ++  ++ +   T +    +   I   +   +D+  +++  V+    
Sbjct: 234 QVNTDLQLNRWMLSTVRT--WLRAEIGQAEIASQDLAYIRVKDVVLLDA 280



 Score = 42.7 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREK 272
              ++SE QS D ++         ++ +   + L     T  +VV+L++G V+       
Sbjct: 349 DGSSESEGQSLDTMNKSEGSDLLADIPLQIAVELARVPVTADEVVSLRVGHVLELHRSPG 408

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300
               LS NGK +   EL  V     +R+
Sbjct: 409 EPVELSVNGKVVARGELVEVEGQLGVRV 436


>gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 302

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 84/259 (32%), Gaps = 5/259 (1%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           L     +    +    +   V +         +  ++       +    +L    S   +
Sbjct: 34  LVENALRPAATLMGASLRRGVRLELGRMDQLPWEQVVAQQDGPALVISFALVPLGSRGVL 93

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
               +  + LL+            +  R+L+ +E+ L  +  + +   L   + T  +  
Sbjct: 94  RFGADAALRLLDLR---LGGDGSPIEPRALTELEQGLLVQVFSDLLVQLASSLQTLLDVR 150

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSS 216
            +           +  +      V  I + +  + + S   L +P   L     LI+  +
Sbjct: 151 LDRVGAETSLEFVQVISPGEMCLVVPIALGIG-DELESELTLYLPYSMLRPVVELIAQRA 209

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
               +   +   D  A + + + + +  R      + + ++ L  G V+P  HR+   A 
Sbjct: 210 IVAVDRGGDTFRDLLAARLHDVRLEVSVRFEPTSISSRTLLELAPGDVVPLGHRQGQPAW 269

Query: 277 LSANGKEIYSCELGRVGKN 295
           +  +   ++   +G+ G  
Sbjct: 270 VIVDRTRLHRAVMGQSGSR 288


>gi|119469992|ref|ZP_01612797.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
 gi|119446702|gb|EAW27975.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
          Length = 133

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 23/75 (30%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       M    ++S    Q  KF   +H+       +            I  
Sbjct: 59  ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 118

Query: 100 SNNLVITLLENLLGA 114
              LV  L++N LG 
Sbjct: 119 EARLVFILVDNFLGG 133


>gi|254454295|ref|ZP_05067732.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 238]
 gi|198268701|gb|EDY92971.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 238]
          Length = 330

 Score = 65.8 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 13/225 (5%)

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            V      S             L   L+E     S    P    R ++ V+  +     +
Sbjct: 73  VVLGLRDGSLAGLTGLFLLDQPLRSALVEMQTMGS-LLPPSDDQRRVTRVDAVMTLPFAS 131

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIENVASSFV 198
           Q+ A L +      +  P   D   ID L+         N  +  I + M         +
Sbjct: 132 QVLAELAEVGFGAADLEPAAYDIGPIDDLRTAGLVMVQGNYRICRITIQMGGGETQGEML 191

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           + +      +  +  +++  K  +              +    +D  +      +  +  
Sbjct: 192 IAM------RPKVSVVTAPVKDTS---GWSVALRDAVQEAPAELDAILTRMTMPIHKLEG 242

Query: 259 LKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITD 302
            ++GQV+           L+   G  I +  LG+V     +R+  
Sbjct: 243 FEVGQVLNLAGTTVGSVTLTGPGGIIITTARLGQVAGKRAVRVQH 287


>gi|146277515|ref|YP_001167674.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555756|gb|ABP70369.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 311

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 100/296 (33%), Gaps = 18/296 (6%)

Query: 13  LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
           +   +L R           +   +         L +  ++   L +D++  +      + 
Sbjct: 1   MTDGVLRRKIEAKARPVVAQAAGAERALRLS--LARAARDAFALALDVAGLASARRSLAE 58

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           ++   +E  +++            +  S  ++  L+E          P   +R  +  + 
Sbjct: 59  LLEMPEERSLYAIVEGPG-EGLGLVALSPPVLSALIEVQTIGRVSAQP-PASRKPTRTDA 116

Query: 133 KLAKRTIAQ--------ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
            +    I Q        ++   ++  +     +  L+D   +  L ++        V T+
Sbjct: 117 AMVSGFIDQTLAELEVLLAEDEDRIWAGGFRYASFLDDPRPLGLLLEDCAYR----VLTV 172

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           N+++ +   + S +L +P E   +  L    +  ++     D     A +       +D 
Sbjct: 173 NVDLALGAKSGSLLLALPAEGRGEPPLR-PEAPEETGTPGSDFGLALAEQVMGAECLLDA 231

Query: 245 RINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
            +      L  V+  ++G V+       +  A ++ +G+++    LG+      IR
Sbjct: 232 VLARVTLPLGTVMGWQVGDVVDLSKATLEDVAFVALDGRQVAEGRLGQHRGMRAIR 287


>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
 gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
           desulfuricans SSM1]
          Length = 292

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 97/283 (34%), Gaps = 19/283 (6%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
               L K+      +  ++ DV+I  T   +G  S +  +F            S +    
Sbjct: 15  EFVDLVKENFGSSLQTVINRDVEIEITEFFTGFISDVYENFDNPVCVKGVETESGNEFGL 74

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           +    +L   L++ ++    E+  +L + +     K  AK  I QI + LN  +    + 
Sbjct: 75  LFTIKDLT-ALVDYMMMGEGESKDELDDET-----KDGAKELITQIVSSLNVPLKEKYDK 128

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII--PQETLLKTTLISL 214
             N         + +   +    +      ++  + + S F+  I     ++++T+    
Sbjct: 129 KFNFTVVDIFTEMSEEDEKEYAAY----KFSIKADKIDSEFIFFIDSAFNSIIETSSEKT 184

Query: 215 SSQNKSENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                     E      +            + + +  +I   K  LKD++ L  G++I  
Sbjct: 185 DDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIEL 244

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    L  N K I   E+  V   + +RI + ++  ++ 
Sbjct: 245 EEYADEPVELLVNNKVIARGEVVVVDGYFGLRIQEIVSKAERI 287


>gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771]
          Length = 47

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
             +    +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++
Sbjct: 1   SGEVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47


>gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
 gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
          Length = 343

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 71/278 (25%), Gaps = 16/278 (5%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            + I      L     + L  +        +++S    +      +        V     
Sbjct: 35  AQAISTWCRDLAQELAQELAPLL---SGGRLNVSIAEPEQVGAQDVFDLIGPIAVNCLLR 91

Query: 88  LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
                            I L +   G       +  ++         A   + Q +A + 
Sbjct: 92  CGEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPSQLP-----HSAAMLVEQFAATVA 146

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
           Q I  T  S+        +   +  T          + +     N   S           
Sbjct: 147 QAIVMTNGSAERA-RGDVLVRSESVTRLKPFGADAEVALFKLTINRGESANWCALFAVAS 205

Query: 208 KTTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                 L        +S  L    D        + + ++  +     TL  +  L+ G  
Sbjct: 206 DRVDGLLPGLEAVRIRSRSLEGSGDFERSGFAAMPLTLEAVVGEIDLTLGRLEQLRPGDK 265

Query: 265 IPFLHREKTCAILSANGKEIY-SCELGRVGKNYTIRIT 301
           IP          +   G+ ++   ++GR+  N  +R+T
Sbjct: 266 IPLTISRDLPLRI---GETVFARGKVGRLDSNLALRVT 300


>gi|326386953|ref|ZP_08208566.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208562|gb|EGD59366.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 295

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 84/268 (31%), Gaps = 16/268 (5%)

Query: 41  LYKKFLPKIFKEKM-----DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
                + +  +  M         +++  + +           +    +S  S+       
Sbjct: 36  RAADRMARTLRGAMARLCGGYPPEVAIAAPREIGIEEFQS--EGLTAYSIYSVLPGLDRL 93

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
                   V+ L++   G      P+   R L       A+  + +I  +L++ +     
Sbjct: 94  ASAIDGEAVLRLVDRTFGG-PGEAPRPMPRELPMS----AELMVQRIETILSEELGRALG 148

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISL 214
            S  +        L +     S   +  + + ++  +       L++P E L   T +  
Sbjct: 149 GSHAIRPLRRDRDLAQLQPFASATRLALLEITISEGSREPWPIRLVLPVEALSSLTGMGA 208

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                S  ++    DP A     + + +   +   +  L+ V TL +GQV+         
Sbjct: 209 QPA-TSTTRAPAKGDPLAEPYGAMPLPVTALLVDTRVPLRTVSTLAVGQVLMLPIA--RS 265

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302
             L   G+ +    +G V     I IT 
Sbjct: 266 VPLVVGGQTVGHGAIGAVDDRVAIEITH 293


>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
 gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
           4359]
          Length = 344

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 104/307 (33%), Gaps = 34/307 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95
            +G +            +  +V+I+    +  K  ++   F  E  V +           
Sbjct: 34  EIGNIAMGSAATTLSMILGRNVNITVPMVREEKMKNVKSDFNGEKVVVTVEYTEGLKGLN 93

Query: 96  FIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +LV  +++ ++G S E    +L    LS + + + +  +   +  L++ +  T 
Sbjct: 94  VLVLEKSLVAAIVDLMMGGSGEVESEELDEIKLSAIGEAMNQM-MGSAATSLSELLGITV 152

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNMTIENV-ASSFVLIIPQETLLKT- 209
             SP   +  + D        + ++    V  +   + IE +  S F  +I  + + K  
Sbjct: 153 NISPPKVEILNFDDPSTKFPPVVDDPEKDVAVVEFEIEIEGLPKSKFYQVIGADLVKKMY 212

Query: 210 --------------------------TLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
                                       +  S    S     ++          + + + 
Sbjct: 213 EYFTRAHKEEAEEKKEEKKEEKKVKVEPVEFSELKPSGTAKTEIPQDKLELLLDVPLKVT 272

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   + TLK V+ +  G +I           +  NGK I   E+  + +N+ +R+T+ 
Sbjct: 273 VELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRVTEI 332

Query: 304 INFDQKS 310
           ++  ++ 
Sbjct: 333 VSPKERL 339


>gi|84515428|ref|ZP_01002790.1| possible flagellar switch protein FliM [Loktanella vestfoldensis
           SKA53]
 gi|84510711|gb|EAQ07166.1| possible flagellar switch protein FliM [Loktanella vestfoldensis
           SKA53]
          Length = 310

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 92/286 (32%), Gaps = 17/286 (5%)

Query: 21  LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
           + G+  D   +  +++S        L K   +   L + ++ T+   G+   ++   +  
Sbjct: 1   MAGQAVDTPPVSPLTTSRAVRLA--LVKAASDAGGLVLRVASTADDVGQLDDLLGGLETG 58

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            +          +  F+     L   ++E          P   +R  +  +K L    + 
Sbjct: 59  LMLVGLDRRGALA-GFVAVDMQLRAAMVEVQTTGRLLDQPAD-DRPATGADKALCDPLLV 116

Query: 141 QISAVLNQCISTTQES----SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
              + L   +  T          +        L        +  V  +N+ +   +    
Sbjct: 117 AFLSALPPAVMGTAYEGWVDDVTVGGRLADSRLAGLLLEDGDYRVLRMNVELGTGDRQGE 176

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
            +L++P        + +     + +    D    F+         +  R++  K  L   
Sbjct: 177 VMLVLP--------VQAAPMVPEEQAPVMDWETAFSAAVQDAPAMLTARLHQFKMPLGRA 228

Query: 257 VTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301
             L++GQV+P          L A +G+ +   +LG+   +  +RI 
Sbjct: 229 QALQVGQVVPLPGCTVNSVRLIAPDGRCVAQAKLGQSAGHRAVRIE 274


>gi|86137304|ref|ZP_01055881.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193]
 gi|85825639|gb|EAQ45837.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193]
          Length = 450

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 98/310 (31%), Gaps = 33/310 (10%)

Query: 18  LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHS 76
           LAR      +    +K S +L    ++ L +   E+ DL + +   + Q  +    ++  
Sbjct: 17  LARKLAASKESGAAQKGSFTL-KALRRSLARAASEQCDLPLAV-LAARQVNRVPEDLVDD 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +       +            LV  L++               R+ +  +  +  
Sbjct: 75  LSDKDLLVVLDGPN-GRLGAATMDAALVTALIQKQTIGQ-IMGKAPAERNYTPTDAAMTA 132

Query: 137 ----RTIAQISAVLNQ-----CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
               ++ A++ A+L         S  +  +   +    I  L+    RL      ++ ++
Sbjct: 133 EFLEKSFAKVHALLQGEKDQLIFSGYRYGAQIEDVRSLILGLEGEDYRL-----ISLTVD 187

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           + +  +     LI+P+ TL +  L    +               A     +   +   + 
Sbjct: 188 LAVGAMQGELKLILPEPTLEELGLSGAKAG-----------SSLAGGMGAMRAELSAILC 236

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIR--ITDRI 304
             +  L +    K+G+V+P          L    G+ I    LG++     +R  I    
Sbjct: 237 KVRVPLNEFSAWKVGEVLPLDQAFLYETDLIDIGGRSISKGRLGQLNGARAVRLTIGRPQ 296

Query: 305 NFDQKSLKNF 314
               +    F
Sbjct: 297 AASDQMGDGF 306


>gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
           20546]
 gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
           20546]
          Length = 272

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 91/241 (37%), Gaps = 36/241 (14%)

Query: 74  IHSFKENFVFSQASLS---SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           +HSF  N +   A+ +   +     F+ C    +I L +   GAS +       ++LS  
Sbjct: 64  LHSFSNNEMEKNATSTFQHNAGGKVFVHCDKATLIKLADCFYGASIDR----AEQNLSNS 119

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           + +L  R   Q++          QE   N E              L+      + +++ +
Sbjct: 120 DLRLQDRIGQQVTQ-----WLAPQEMWANGE------------FELAFGTGLYVKIDIQL 162

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
           ++   S  +       L   L++  ++      +E L D F +      V ++  ++ K+
Sbjct: 163 DDHCGSLHIK------LDEQLVNTLTEQLDLQPNESLYDSFCQSLAATPVKLNVLLSQKR 216

Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             L D+++L+   ++P      +   +S   + +++  +        +     IN D++ 
Sbjct: 217 MPLSDLLSLQANDILPIEL--LSTVPVSIGDQHLFNGSVAEKEGQLVL----IINHDKEP 270

Query: 311 L 311
           L
Sbjct: 271 L 271


>gi|260575623|ref|ZP_05843621.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
 gi|259022266|gb|EEW25564.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
           SW2]
          Length = 325

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 75/254 (29%), Gaps = 18/254 (7%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           +++     Q    + ++    E  + +            +  S +++  L+E       +
Sbjct: 41  LEVEKLDIQRRSLTELLDMPPERALIAVLEG-PAEGLGVLVISPSILAGLIEAQ--TVGQ 97

Query: 118 TIPQLY-NRSLSTVEKKLAKRTIAQISAVLNQ--------CISTTQESSPNLEDFYDIDY 168
             P+    R  +  +  +    +      +            +     +  L+D   +  
Sbjct: 98  VSPRPEFARKPTRTDAAMVAGMLDLALEGMESLLVAEDDLVWAGGFRYASFLDDPRPLGL 157

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
           L ++        +    +++       S +L +P +   +       +       +    
Sbjct: 158 LLEDVPYR----LVQAQISLAGGMKTGSLMLALPADGRGR-KPRRPDAVAPQAGAALMFA 212

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSC 287
                +    +  ++  +      L  V+ LK+G V+P          L+   G+ +   
Sbjct: 213 AAMNEQVMAADCTLEAVLAKVTLPLAAVMKLKVGDVLPLGTAALDRIALTGITGQPVAVG 272

Query: 288 ELGRVGKNYTIRIT 301
            LG+      +R+ 
Sbjct: 273 RLGQNRGMRAVRVD 286


>gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
 gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
          Length = 458

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 82/285 (28%), Gaps = 26/285 (9%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G      T++ +  S      +          DL + +     QS +    +     +  
Sbjct: 29  GASNGSFTLKVLRRSFARAASEL--------CDLPLAV-LAGRQSNRAPEELSDLLSDQH 79

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK----RT 138
                               LV  L++               R+ +  +  +       +
Sbjct: 80  LLIVLDGPDGRVGAATMDAALVTALIQKQTIGQ-IMGKAPSERNYTPTDAAMTAGFLELS 138

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
             ++  +L+     T           D            +  + ++ +++ +  +  S  
Sbjct: 139 FEKVLGLLDGQADQTLFKGYRFGAQIDSVRNLVLGLEAEDYRLISMTVDIALGTMQGSIN 198

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           L++P+ T  +  L   ++                     L   +   +   +  L ++  
Sbjct: 199 LLLPEPTPEELGLAGAAAGP-----------SLGSSMGNLRAELSAVLCKMRLPLNELSN 247

Query: 259 LKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIRITD 302
           LK G VIP          L S  G+ I   +LG++  +  +R+ +
Sbjct: 248 LKPGDVIPLEQAFLYETDLISIGGQSIAQGKLGQMNGSRAVRLNE 292


>gi|258622512|ref|ZP_05717534.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262173378|ref|ZP_06041055.1| putative flagellar motor switch protein [Vibrio mimicus MB-451]
 gi|258585212|gb|EEW09939.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261890736|gb|EEY36723.1| putative flagellar motor switch protein [Vibrio mimicus MB-451]
          Length = 267

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 35/210 (16%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS---LSTVEKKLAKRTIAQISAVLNQ 148
               F+   N ++I L +   GA+         R    L+  + ++ +R           
Sbjct: 87  GGRVFVHADNVVLIKLADRFYGAN-------EERDSTKLTNSDLRIQERI---------- 129

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                  S   +      D    +    +N       + +  +  A    L +    L++
Sbjct: 130 -------SKLIITKLAPDDMWAMSDFAPTNGVGLHAELIIQFDGFAGRVHLKL-DSNLIQ 181

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           T +  L  Q+     + DL  PF        V ++  +  K   L D+V+LK G +    
Sbjct: 182 TLVEQLELQS-----NTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIE 236

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTI 298
                    S   + ++S  +        +
Sbjct: 237 LPSDIPI--SIGHQPLFSGRIAERDDQLVL 264


>gi|84686561|ref|ZP_01014454.1| possible flagellar switch protein FliM [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665474|gb|EAQ11951.1| possible flagellar switch protein FliM [Rhodobacterales bacterium
           HTCC2654]
          Length = 378

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 82/246 (33%), Gaps = 17/246 (6%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVE 131
           I+    E+ + +            I    + +  L+E     +   +P+    R  +  +
Sbjct: 63  IVEGIGEHALMALIEGPE-GRYGLILVDPDTLAALIEIQ--TTGRVVPRPATARPPTRTD 119

Query: 132 KKLAKRTIAQISAVLN-QCISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMT 189
             +    I ++  +L  +      + +P L  F Y +   +     ++ + V     +++
Sbjct: 120 AIMCADFIDRVLELLEDRTAEADIDIAPALGGFRYALALSEARAIPMTLDDVPYRRFHVS 179

Query: 190 I----ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           +         +  +I+P          + ++      Q+       A    +  V +   
Sbjct: 180 LDLGRGAKQGTLDVILPFNAAPSGAAAATNADPAGFTQA------LAEVVGEAEVLLRGT 233

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRI 304
           ++  +  L +V  L +G VIP          +   NG+ +    LG  G +  IRI    
Sbjct: 234 LHRLQMPLAEVAGLSVGSVIPIPREALGQVAIEDINGRTVKHGRLGMSGGHRAIRIGAVA 293

Query: 305 NFDQKS 310
             + + 
Sbjct: 294 EAEPQM 299


>gi|258624665|ref|ZP_05719600.1| putative flagellar motor switch protein [Vibrio mimicus VM603]
 gi|258583057|gb|EEW07871.1| putative flagellar motor switch protein [Vibrio mimicus VM603]
          Length = 267

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 35/210 (16%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS---LSTVEKKLAKRTIAQISAVLNQ 148
               F+   N ++I L +   GA+         R    L+  + ++ +R           
Sbjct: 87  GGRVFVHADNVVLIKLADRFYGAN-------EERDSTKLTNSDLRIQERI---------- 129

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                  S   +      D    +    +N       + +  +  A    L +    L++
Sbjct: 130 -------SKLIITKLAPDDMWAISDFAPTNGVGLHAELIIQFDGFAGRVHLKL-DSNLIQ 181

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           T +  L  Q+     + DL  PF        V ++  +  K   L D+V+LK G +    
Sbjct: 182 TLVEQLELQS-----NTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIE 236

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTI 298
                    S   + ++S  +        +
Sbjct: 237 LPSDIPI--SIGHQPLFSGRIAERDDQLVL 264


>gi|28901395|ref|NP_801050.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153836038|ref|ZP_01988705.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260362949|ref|ZP_05775818.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|260880236|ref|ZP_05892591.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|260895353|ref|ZP_05903849.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|260901178|ref|ZP_05909573.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|28809942|dbj|BAC62883.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|29423527|gb|AAO73589.1| lateral flagellar FliM-like motor switch protein [Vibrio
           parahaemolyticus]
 gi|149750792|gb|EDM61537.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308085727|gb|EFO35422.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|308092442|gb|EFO42137.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|308109388|gb|EFO46928.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|308112168|gb|EFO49708.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
          Length = 272

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 92/291 (31%), Gaps = 40/291 (13%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQS 67
           +  PL   LL +          I     +L       L    +  +  + V+ S TS   
Sbjct: 11  DIKPLDVELLGKPI------HIIRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDL 64

Query: 68  GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
            +FS  +    +                F+      ++ L +   GA             
Sbjct: 65  HRFSPAMMDKDQTS----THKHQEGGMVFVHGDTQTLVKLADRFYGA------------- 107

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
              E+ +A  T + +   L + IS        +      D  +             + +N
Sbjct: 108 -NTERSVATLTASDLR--LQERISRI-----IIGWLAPQDMWEACEYEAPRGIGLCVQLN 159

Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           +T E    S  L +    L++T +  L  Q+       DL +PF R      V ++  ++
Sbjct: 160 ITFEGYQGSMYLKL-DTHLIQTLIEQLELQS-----DVDLYEPFCRSLESTPVRLNVVLS 213

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            K   L DVV+LK   ++P          +S   + +++  +        +
Sbjct: 214 KKTMALSDVVSLKPDDIMPIEL--LNTVPVSIGNQPLFTGRIAEQDGQLVL 262


>gi|311086395|gb|ADP66476.1| flagellar motor switch protein FliM [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 300

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 10  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 64

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 65  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 124

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
             ++          N  +       KK    L+  F+     N  I N    F  +IP+ 
Sbjct: 125 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 183

Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            L         S   S   +  E  I+        Y + VNI ++I     +   +  L 
Sbjct: 184 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 243

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +G V+      K         + I+     R  +   I I + I+   +S ++
Sbjct: 244 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 294


>gi|257471133|ref|ZP_05635132.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
          Length = 300

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 10  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 64

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 65  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 124

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
             ++          N  +       KK    L+  F+     N  I N    F  +IP+ 
Sbjct: 125 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 183

Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            L         S   S   +  E  I+        Y + VNI ++I     +   +  L 
Sbjct: 184 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 243

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +G V+      K         + I+     R  +   I I + I+   +S ++
Sbjct: 244 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 294


>gi|219682014|ref|YP_002468398.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621747|gb|ACL29903.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 315

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 25  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 79

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 80  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 139

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
             ++          N  +       KK    L+  F+     N  I N    F  +IP+ 
Sbjct: 140 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 198

Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            L         S   S   +  E  I+        Y + VNI ++I     +   +  L 
Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +G V+      K         + I+     R  +   I I + I+   +S ++
Sbjct: 259 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 309


>gi|212704407|ref|ZP_03312535.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098]
 gi|212672128|gb|EEB32611.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098]
          Length = 234

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 17/178 (9%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
             +E+    ++++    +   F  +    +E        L        +      V +LL
Sbjct: 54  SMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVLDRAFVFSLL 113

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN-----QCISTTQESSPNLEDF 163
           E   GA      +   R L+ +E  LA++   +  A  +              S +L   
Sbjct: 114 EEFFGAGGFE--RPGRRPLTALETMLARKFADRFLAAFDLAGKPSSWHPRCGHSLSLPRL 171

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNK 219
             +   ++    L+            +     +  L +P    T L           K
Sbjct: 172 AVLVPDEQPVWHLA--------FRSLLGGRPGALHLCLPEDFSTHLAVRSALPGPGRK 221


>gi|310814876|ref|YP_003962840.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare
           Y25]
 gi|308753611|gb|ADO41540.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare
           Y25]
          Length = 340

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/296 (10%), Positives = 82/296 (27%), Gaps = 29/296 (9%)

Query: 35  SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
            +    + ++   +   E   L   ++      G    I+ +  +  +            
Sbjct: 20  GAQPQRVLRQSFARALTEVGGLRATLALPDVGEGVLDDILPALPDGMILFSLVCDG-DIV 78

Query: 95  FFIGCSNNLVITLLENLLGASH-----------ETIPQLYNRSLSTVEKKLAKRTIAQ-- 141
             +     L + ++E                       +  R  ++V++ L +    +  
Sbjct: 79  GLMAFDAQLRMAVVEAQTLGEPYHASMPEPRGEPYHASMPERPRTSVDEVLCQPVADRCI 138

Query: 142 ---ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---NVAS 195
              I+  L    S     +       D  +        +        M + +      A 
Sbjct: 139 TDLIAEALAAPTSGWSVQAWVEGVVCDRPFSGGRDAAFALSHGAYRQMRIGVGISAERAG 198

Query: 196 SFVLIIP----QETLLKTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
           S VL++P    +  + +   ++  +       S ++         R      V++   ++
Sbjct: 199 SLVLLLPVEGARAAVAQRRKLAEDAPARAVEASRSRHAGWSLSINRNVMGAAVDLQAVLH 258

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD 302
             +  L  +     G V+           L       + + +LG+ G    IR+ +
Sbjct: 259 RMRLPLSQIEGWAAGDVVMMPGASLAAVRLVGVADTPVGTGQLGKAGGMRAIRMKE 314


>gi|187732543|ref|YP_001879724.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94]
 gi|187429535|gb|ACD08809.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94]
          Length = 122

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
            F +I P   LL            S N+ ++  D   R+     + + T        L  
Sbjct: 8   PFSMIEPLRELL-----VNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQ 62

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           ++ LK G V+P         I   +G  + + + G +   Y +RI   IN 
Sbjct: 63  ILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 111


>gi|219681458|ref|YP_002467843.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219624301|gb|ACL30456.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 315

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 25  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 79

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 80  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 139

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
             ++          N  +       KK    L+  F+     N  I N    F  +IP+ 
Sbjct: 140 AFSEIYKKYFVKEINFFNTKIFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 198

Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            L         S   S   +  E  I+        Y + VNI ++I     +   +  L 
Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +G V+      K         + I+     R  +   I I + I+   +S ++
Sbjct: 259 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 309


>gi|15616702|ref|NP_239914.1| flagellar motor switch protein FliM [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386787|sp|P57182|FLIM_BUCAI RecName: Full=Flagellar motor switch protein FliM
 gi|25403543|pir||H84938 flagellar motor switch protein fliM [imported] - Buchnera sp.
           (strain APS)
 gi|10038765|dbj|BAB12800.1| flagellar motor switch protein fliM [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 315

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 25  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 79

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 80  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 139

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
             ++          N  +       KK    L+  F+     N  I N    F  +IP+ 
Sbjct: 140 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 198

Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            L         S   S   +  E  I+        Y + VNI ++I     +   +  L 
Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           IG V+      K         + I+     R  +   I I + I+   +S ++
Sbjct: 259 IGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 309


>gi|89055183|ref|YP_510634.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1]
 gi|88864732|gb|ABD55609.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1]
          Length = 388

 Score = 60.4 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 5/215 (2%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV-LNQCI 150
                +   + LV  L+E       E       R ++ +++ L +  +  + A    +  
Sbjct: 85  GRRGLVALDHPLVDALIEVQATGEVEKTNHPA-RKVTRIDEALCRDFLDLVLAAFAQETA 143

Query: 151 STTQESSPNLEDFYDI--DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                  P+   +  I  +  + N       +           +     VL++P +  + 
Sbjct: 144 GQAGRDWPDRMRYGSIITERAQLNLLMPERGYRVLRTSVTMGGHKTGDLVLVLPSDPAIA 203

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S+   +      +   D          + +D  +      L  V  L  G ++PF 
Sbjct: 204 RRGGSVEQPSAPAEAPKGWGDRMLGAISTAPMALDAVLMRTIMPLGKVEDLAQGDLVPFD 263

Query: 269 HREKTCAILSANGKEIY-SCELGRVGKNYTIRITD 302
           H + +   L      ++    LG+V     +R  D
Sbjct: 264 HNDLSAISLEDEIGHVFARGALGQVSGRRAVRFGD 298


>gi|224825754|ref|ZP_03698858.1| surface presentation of antigens (SPOA) protein [Lutiella
           nitroferrum 2002]
 gi|224601978|gb|EEG08157.1| surface presentation of antigens (SPOA) protein [Lutiella
           nitroferrum 2002]
          Length = 291

 Score = 60.0 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 76/206 (36%), Gaps = 11/206 (5%)

Query: 97  IGCSNNLVITLLENLLGAS--HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
           +  +  L++ +L+   G             R  +  E++LA+    +++A L Q +    
Sbjct: 86  VNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTARLVQAVRRLS 144

Query: 155 ESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL-I 212
               P L+    ++ L          +   + +       AS   L +      +    +
Sbjct: 145 RRPLPTLKAPPAVETLPFPPGDAP-AWHMQLTLGEAGSGGASQIGLALDAAVFAQVLRQL 203

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
            L +        + L  PFA    QL++ +  R+  K+ TL +++ L++G V+P   ++ 
Sbjct: 204 PLQAALPGPAAGKTLARPFAE---QLSIRLSARLMEKRLTLGEILDLRVGSVLPVSLQQ- 259

Query: 273 TCAILSANGKEIYSCELGRVGKNYTI 298
             A +      +++  +        +
Sbjct: 260 -QADVYIGRTRVFTAAVAESHGKLCL 284


>gi|213418731|ref|ZP_03351797.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
             S ++ ++  D   R+     + +          L  ++ LK G V+P         I 
Sbjct: 5   ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIA 62

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
             +G  + + + G V   Y +R+   IN    SL     K
Sbjct: 63  HVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEEQPK 102


>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
 gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
          Length = 346

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 111/331 (33%), Gaps = 39/331 (11%)

Query: 18  LARLTGKLGDKKTIEKISSSL----GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
           + +L G       +      +    G +            +  D+ I+  + +  K  ++
Sbjct: 12  IDKLLGGSDTGGVLTLEEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNV 71

Query: 74  IHSF-KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
              F  E  V S   +        +  +  LV  + + ++G S E    +L    LS V 
Sbjct: 72  KSDFSGEQVVVSVEYIEGLEGLNVLVLNKKLVAVIADLMMGGSGEVETEELDEIKLSAVG 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNM 188
           + + +  +   +  L++ +  T   SP   +  + D        +++     V  +   +
Sbjct: 132 EAMNQM-MGSAATSLSELLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEI 190

Query: 189 TIENV-ASSFVLIIPQETLLKT----------------------------TLISLSSQNK 219
            IE +  S F  +I  + + K                               +  +    
Sbjct: 191 EIEGLPKSKFYQVISADLVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKP 250

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           SE +  ++          + + +   +   + TLK V+ +  G +I           +  
Sbjct: 251 SETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILV 310

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NGK I   E+  + +N+ +RIT+ ++  ++ 
Sbjct: 311 NGKLIARGEVVVIDENFGVRITEIVSPKERL 341


>gi|328469329|gb|EGF40275.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
           10329]
          Length = 272

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 34/269 (12%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           I     +L       L    +  +  + V+ S TS    +FS  +    +          
Sbjct: 27  IRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDLHRFSPAMMDKDQTS----THKH 82

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 F+      ++ L +   GA                E+ +A  T + +   L + 
Sbjct: 83  QEGGMVFVHGDTQTLVKLADRFYGA--------------NTERSVATLTASDLR--LQER 126

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
           IS        +      D  +        +    + +N+T E    S  L +    L++T
Sbjct: 127 ISRI-----IIGWLAPQDMWEACEYEAPRDIGLCVQLNITFEGYQGSMYLKL-DTHLIQT 180

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  L  Q+       DL +PF R      V ++  ++ K   L DVV+LK   ++P   
Sbjct: 181 LIEQLELQS-----DVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIEL 235

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +S   + +++  +        +
Sbjct: 236 --LNTVPVSIGNQPLFTGRIAEQDGQLVL 262


>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
 gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
          Length = 277

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 89/240 (37%), Gaps = 8/240 (3%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
               V +       ++   +  +  L+  + E +LG          N +LS  E   AK 
Sbjct: 42  PPLVVANVTVGGDVTAKMMLVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
             + I    +  +   +       +   +++L ++ N   + F      ++ I +V+   
Sbjct: 98  VFSNILGAFSTSLGAQKGMPKLNFEVAKVNFLDESANLDVSAFEKIYIYSVKIGDVSEHI 157

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLK 254
            +++    +         S  ++     DLI    R       + + +  RI  K+  LK
Sbjct: 158 AVVLDFALVKFLNKDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLK 217

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           DV+T+ IG VI           +  + K +   E+  V  N+ I+IT +I   ++ L+  
Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQIT-QIGTKKERLEQL 276


>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
 gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
          Length = 277

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 8/240 (3%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
               V + A     ++   +  +  L+  + E +LG          N +LS  E   AK 
Sbjct: 42  PPLAVANIAVSGDTTAKMILVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
             + I    +  +   +       +   +++L ++ N   N F      ++ I +V+   
Sbjct: 98  VFSNIMGAFSTSLGAQKGMPKLNFEVAKVNFLDESANFDLNAFEKIYVYSVKIGDVSEQI 157

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLK 254
            +++    +            ++     DL     R       + + +  RI  K+  LK
Sbjct: 158 AVVLDFALVKFLNKDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLK 217

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
           DV+T+ IG VI           +  + K +   E+  V  N+ I+IT +I   ++ L+  
Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQIT-QIGTKKERLEQL 276


>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
 gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga sp. RQ2]
          Length = 346

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 37/309 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95
            +G +            +  D+ I+  + +  K  ++   F  E  V S           
Sbjct: 35  EIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYTEGLEGLN 94

Query: 96  FIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +     LV  + + ++G S E    +L    LS V + + +  +   +  L++ +  T 
Sbjct: 95  VLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQM-MGSAATSLSELLGITI 153

Query: 155 ESSPNLEDFYDIDYLKKN-----TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
             SP   +  + D           N   +  V    M +      S F  +I  + + K 
Sbjct: 154 NISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPK-SKFYQVISADLVKKM 212

Query: 210 ----------------------------TLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                                         +  +    SE +  ++          + + 
Sbjct: 213 YEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLLDIPLR 272

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   + TLK V+ +  G +I           +  NGK I   E+  + +N+ +RIT
Sbjct: 273 VTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRIT 332

Query: 302 DRINFDQKS 310
           + ++  ++ 
Sbjct: 333 EIVSPKERL 341


>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
 gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermotoga naphthophila RKU-10]
          Length = 346

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 37/309 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95
            +G +            +  D+ I+  + +  K  ++   F  E  V S           
Sbjct: 35  EIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYTEGLEGLN 94

Query: 96  FIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +     LV  + + ++G S E    +L    LS V + + +  +   +  L++ +  T 
Sbjct: 95  VLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQM-MGSAATSLSELLGITI 153

Query: 155 ESSPNLEDFYDIDYLKKN-----TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
             SP   +  + D           N   +  V    M +      S F  +I  + + K 
Sbjct: 154 NISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPK-SKFYQVISADLVKKM 212

Query: 210 ----------------------------TLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
                                         +  +    SE +  ++          + + 
Sbjct: 213 YEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLLDIPLR 272

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +   + TLK V+ +  G +I           +  NGK I   E+  + +N+ +RIT
Sbjct: 273 VTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRIT 332

Query: 302 DRINFDQKS 310
           + ++  ++ 
Sbjct: 333 EIVSPKERL 341


>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
           Rt17-B1]
          Length = 357

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 109/344 (31%), Gaps = 51/344 (14%)

Query: 18  LARLTGKLGDKKTIEKISSSL----GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
           L  L G+L  ++++  I   +    G +            +   VDIS    +      +
Sbjct: 12  LDALLGQLTSEESLTDIEKDMIGEVGNIILGSGATALSSILGRKVDISTPEVEVKTLKDL 71

Query: 74  IHSFKENFVFSQASLSSW-SSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
                   V               +         + + ++G   +    +L    LS V 
Sbjct: 72  RSEVSGEKVTVIIHFEGAVEGLNALVLEKKTAAEIADIMMGGLGKVESDELDEMKLSAVG 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF--VTTINMNMT 189
           + + +  +   +  L+  I  +   +P   +  + D  +     +  +   V  +N  M+
Sbjct: 132 EAMNQM-MGSAATSLSDMIKKSVNITPPTIEILNFDNAETKFPPIGEDADKVAKVNFTMS 190

Query: 190 IENVA-SSFVLIIPQ-----------------------------------------ETLL 207
           IE++  + F L +P                                              
Sbjct: 191 IEDLEPAKFFLAMPIPFVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAA 250

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           K        +  S  +   +ID   +  + + +N+   +   K +LK+++ L +G +I  
Sbjct: 251 KPVQFEDFGKVPSAQEQTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIEL 310

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                    +  N K I   E+  + +N+ +RIT+ ++  ++  
Sbjct: 311 DKLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVSPKERLY 354


>gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata]
          Length = 110

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           L+    +    Q+       +      ++     + +   +   + T+++ ++L++G  I
Sbjct: 4   LIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCI 63

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309
                      +    K  +  + GRV +   ++I D  I  +Q 
Sbjct: 64  TLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 108


>gi|254440956|ref|ZP_05054449.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 307]
 gi|198251034|gb|EDY75349.1| Surface presentation of antigens protein [Octadecabacter
           antarcticus 307]
          Length = 330

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 13/224 (5%)

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
            V      SS            L   L+E               R ++ V+  ++    +
Sbjct: 73  VVLGLRDGSSAGLTGLFLMDQPLRSALVEMQTMG-CLLPAADEQRRVTRVDAVMSVPFAS 131

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL--SNEFVTTINMNMTIENVASSFV 198
           Q+ A L +      +  P   D   ID L+     +   N     I + M   +     +
Sbjct: 132 QLLAELAEVGFGAADFEPTAYDIGPIDDLRTAGLVMLQGNYRCWRITIQMGGGDAQGEML 191

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           +       L+  +   S   K  +                   +D  +      +  +  
Sbjct: 192 IA------LRPKVPVSSLPVKDTSV---WSMALRSAVQDAPAELDAVLTRMTLPIHKIEA 242

Query: 259 LKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301
            ++G V+           L+   G+ I +  LG+V     +R+ 
Sbjct: 243 FEVGHVLNLAGTTVGLVTLTGPGGEIISTARLGQVAGKRAVRVQ 286


>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
           1251]
 gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
          Length = 283

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 21/282 (7%)

Query: 48  KIFKEKMDLDVDISYTSCQSGKFSH-----IIHSFKENFVFSQASLS-SWSSNFFIGCSN 101
           K+F+ +    ++       S +        II S     V    S+S   +S+  +  + 
Sbjct: 6   KLFESETVGTIEALIGQAPSMELKERQELSIISSIVPPIVLLNVSVSGDTNSSAMLALTP 65

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            LV +L + ++G        +    L       AK   + I   ++  +   +E      
Sbjct: 66  RLVASLSDMMMGEDQSNREDVSEDDL-----DAAKEIASNIFGAISNSLGAQKELPKLSF 120

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ--ETLLKTTLISLSSQNK 219
           +  +I+Y+ +N +     +      +  I    S  +LI+ +    +L     +L    K
Sbjct: 121 NIDNIEYIDENKDVSLENYSKMFVYHFVIGETNSLLMLIMDENLSNILFQKDKTLGDDRK 180

Query: 220 SENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +E+         +            + + +  RI  KK  LKDV+ + IG VI       
Sbjct: 181 NESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLAN 240

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +  +   I   E+  V  N+ ++IT  I   ++ L   
Sbjct: 241 DPLDILVDDNVIAEGEVVIVDGNFGVQIT-SIGTKRERLNQL 281


>gi|159043958|ref|YP_001532752.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12]
 gi|157911718|gb|ABV93151.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12]
          Length = 349

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/189 (10%), Positives = 59/189 (31%), Gaps = 7/189 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFYD-IDYLKKNTNR 175
           +  +   R  S++++ L +  I +      + ++ T  E+        D +      +  
Sbjct: 116 SPGEPEPRDASSIDQLLCRGFIERFFEAWGELLAGTSHEAWLAGYAPTDGMMQPDVLSVS 175

Query: 176 LSNEFVTTINMNMTIENVASS-FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
             +       +    + +    F + +P     +     L     +   + +    +   
Sbjct: 176 APDIPYRLYLITAQFDGLREVAFSVALPVS---RPRPADLVETGDAARSTGEWAKDWRAA 232

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVG 293
             +    +D  +   + +L +V     G  +       +   L   NG  + +  LG+  
Sbjct: 233 VLESPAELDAVLCKLELSLDEVRRWAPGDRVSIPASALSSVSLGRRNGPSVATARLGQAR 292

Query: 294 KNYTIRITD 302
               +R+ +
Sbjct: 293 GVRALRLNE 301


>gi|662861|gb|AAA79753.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 65

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +   +  ++  L+D++ ++ G VIP    E    ++ ANG   +  +LG    N  ++I 
Sbjct: 1   LGATVVRRQLKLRDILHMQPGDVIPVEMPEH--MVMRANGVPAFKVKLGAHKGNLALQIL 58

Query: 302 DRINFDQ 308
           + +   +
Sbjct: 59  EAVERSR 65


>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 347

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 94/305 (30%), Gaps = 38/305 (12%)

Query: 39  GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFI 97
           G +          + +   V I+    +  K      SF+E ++  +       S    +
Sbjct: 45  GNISMGSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFTEGLSGKNVL 104

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTT 153
               N V  +   ++G       ++     + +E+  A+  + Q+    +  L++     
Sbjct: 105 IIKENEVGVIASLMMGGDGTHSGEI-----TELEQSAAQEAMNQMIASSATALSEIFKRK 159

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTT-INMNMTIENVASSFVLIIP---------- 202
              SP      +            +E V    NM +          ++ P          
Sbjct: 160 INISPPRSKMINSRENDTYEPFGGHEVVVIYFNMQIEDLVDTDIMQVMEPATAKEVAQML 219

Query: 203 ----------------QETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTR 245
                            E L      ++  +  K+E Q     D        + + ++  
Sbjct: 220 LAKVYGSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVV 279

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   +  +K++++   G +I           +  NG  +   E+  VG+N+ I+I   ++
Sbjct: 280 LGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILS 339

Query: 306 FDQKS 310
             ++ 
Sbjct: 340 PKERL 344


>gi|254228802|ref|ZP_04922225.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262396479|ref|YP_003288332.1| putative flagellar motor switch protein [Vibrio sp. Ex25]
 gi|151938749|gb|EDN57584.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262340073|gb|ACY53867.1| putative flagellar motor switch protein [Vibrio sp. Ex25]
          Length = 272

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 33/241 (13%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+ S TS    +F+ I     +                F+   ++ +I L +   GAS  
Sbjct: 55  VEASLTSVDLHRFTPIKMDKDQTS----TYQHQEGGMVFVHGDSHTLIKLADRFYGAS-- 108

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
                        E+     T + +   L + IS          + +++   +       
Sbjct: 109 ------------TERSATTLTASDLR--LQERISRIIIGWLAPGEMWEMGEYEA-----P 149

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
                 + +N+  ++   S  L +    L++T +  L  Q        DL  PF R    
Sbjct: 150 RGIGINVQLNIAFDDHQGSIHLKL-DSHLIQTLIEQLELQP-----DTDLYQPFCRSLET 203

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V ++  ++ KK  L DVV L+   ++P          +S   + +++  +        
Sbjct: 204 TPVRLNVVLSKKKMPLSDVVGLQPNDILPIEL--LNTVPVSIGNQSLFTGRIAEQDGQLV 261

Query: 298 I 298
           +
Sbjct: 262 L 262


>gi|153840527|ref|ZP_01993194.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
 gi|149745811|gb|EDM56941.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
           AQ3810]
          Length = 168

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 20/73 (27%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
             + + +       +    ++S    Q  KF    ++       +            I  
Sbjct: 58  ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117

Query: 100 SNNLVITLLENLL 112
              LV  L++  L
Sbjct: 118 EARLVFILVDKFL 130


>gi|153831629|ref|ZP_01984296.1| putative flagellar motor switch protein [Vibrio harveyi HY01]
 gi|148872139|gb|EDL70956.1| putative flagellar motor switch protein [Vibrio harveyi HY01]
          Length = 272

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 85/269 (31%), Gaps = 34/269 (12%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           I +   SL       L    +  +  + ++ +  + +  +FS  +    +          
Sbjct: 27  IREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRFSPTLLDKDQTS----TYQH 82

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 +I      +I L +   GA+ E        SL+  + +L +R    I       
Sbjct: 83  QDGGMVYIHGDAQALIKLADRFYGAATERTST----SLTASDLRLQERISRII-----IN 133

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
               QE     E                        +++  E+   +  L +   T+++T
Sbjct: 134 WLAPQEMWQTCE------------YETPRGIGLHAELSIAFEDFQGAIHLKL-DSTMIQT 180

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  L+  N       DL  PF R      V ++  ++ K   L DVV L+   ++P   
Sbjct: 181 LIEQLALHN-----DTDLYQPFCRSLESTPVRLNVVLSKKTMALSDVVRLQPDDILPIEL 235

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +S   + ++S  +        +
Sbjct: 236 --LNTVPVSIGNQTLFSGRVAEQDGQLVL 262


>gi|114797535|ref|YP_758983.1| SPOA family protein [Hyphomonas neptunium ATCC 15444]
 gi|114737709|gb|ABI75834.1| SPOA family protein [Hyphomonas neptunium ATCC 15444]
          Length = 246

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           + +  +EN+               ++ ++  ++    T+ +   LK+G +IP    +   
Sbjct: 142 AERRAAENKRPSTSRQLRDSVMSSSIRVEAVLDKISMTIGECSRLKVGDLIPLPDTDPGS 201

Query: 275 AILSA---NGK-EIYSCELGRVGKNYTIRITDRI 304
             L+A   NG+ EI  CE+G   +   +++   +
Sbjct: 202 VRLNAETVNGQIEIGQCEMGVWKRQRALKLKQPV 235


>gi|269960159|ref|ZP_06174535.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835130|gb|EEZ89213.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 272

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 85/269 (31%), Gaps = 34/269 (12%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           I +   SL       L    +  +  + ++ +  + +  +FS  +    +          
Sbjct: 27  IREKLESLISESCSSLTNELQNWLSSNKIEANLVAVELHRFSPTLLDKDQTS----TYQH 82

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 +I      +I L +   GA+ E        SL+  + +L +R    I       
Sbjct: 83  QDGGMVYIHGDAQALIKLADRFYGAATERTST----SLTASDLRLQERISRII-----IN 133

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
               QE     E                        +++  E+   +  L +   T+++T
Sbjct: 134 WLAPQEMWQPCE------------YETPRGIGLHAELSIAFEDFQGAIHLKL-DSTMIQT 180

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  L+  N       DL  PF R      V ++  ++ K   L DVV L+   ++P   
Sbjct: 181 LIEQLALHN-----DADLYQPFCRSLESTPVRLNVVLSKKTMALSDVVGLQPDDILPIEL 235

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +S   + ++S  +        +
Sbjct: 236 --LNTVPVSIGNQTLFSGRVAEQDGQLVL 262


>gi|254510732|ref|ZP_05122799.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534443|gb|EEE37431.1| Surface presentation of antigens protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 376

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 14/194 (7%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQ-ISAVLNQCISTTQESSPN-LEDFYDIDYLKKNTNRL 176
                 R  +  +  +    +   +   L    S    +S +  E     +  +     L
Sbjct: 114 PDPPAERPFTDTDAAMVAPLVEDTLGRALKLVESPADMTSLSGFEYASRAEDQRSLILAL 173

Query: 177 SNEF--VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
            +E   V  + + +          +++P+  L          +  ++     L    A  
Sbjct: 174 VDEAYRVFDLTVELAGGARQGEVCILLPERPL-------SDGEQATDTAQSGLSLDQASG 226

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVG 293
             +    ++T I+     L  +  L +G ++P    R     +LS +        LG+  
Sbjct: 227 VMRAE--LNTVISRMSVPLTALSNLSVGDILPLQGARVDRVEVLSIDRARATVGRLGQCS 284

Query: 294 KNYTIRITDRINFD 307
               IRI + ++  
Sbjct: 285 GMRAIRINETLSAP 298


>gi|156976198|ref|YP_001447104.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527792|gb|ABU72877.1| hypothetical protein VIBHAR_04969 [Vibrio harveyi ATCC BAA-1116]
          Length = 272

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 85/269 (31%), Gaps = 34/269 (12%)

Query: 31  IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
           I +   SL       L    +  +  + ++ +  + +  +FS  +    +          
Sbjct: 27  IREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRFSPTLLDKDQTS----TYQH 82

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                 +I      +I L +   GA+ E        SL+  + +L +R    I       
Sbjct: 83  QDGGMVYIYGDAQALIKLADRFYGAATERTST----SLTASDLRLQERISRII-----IN 133

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
               QE     E                        +++  E+   +  L +   T+++T
Sbjct: 134 WLAPQEMWQTCE------------YETPRGIGLHAELSIAFEDFQGAIHLKL-DSTMIQT 180

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  L+  N       DL  PF R      V ++  ++ K   L DVV L+   ++P   
Sbjct: 181 LIEQLALHN-----DTDLYQPFCRSLESTPVRLNVVLSKKTMALSDVVGLQPDDILPIEL 235

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
                  +S   + ++S  +        +
Sbjct: 236 --LNTVPVSIGNQTLFSGRVAEQDGQLVL 262


>gi|77463738|ref|YP_353242.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
 gi|77388156|gb|ABA79341.1| possible flagellar switch protein FliM [Rhodobacter sphaeroides
           2.4.1]
          Length = 323

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 79/259 (30%), Gaps = 9/259 (3%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +  ++   L +D+    C     + ++   ++    +            I  +  L+ 
Sbjct: 37  LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFHAVLEGPG-EGLGLIALAPPLLA 95

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFY 164
            L+E               R  S  +  + +  I +  A L+  +   +     +   + 
Sbjct: 96  GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLLEDEDRVWASGFRYA 154

Query: 165 DIDYLKKNTNRLSNEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                 +    L  +    V    + + +   +   +L +P +   +       SQ+++ 
Sbjct: 155 SFLDDPRPLGLLLEDCSYRVLVAEVELALGAKSGQLLLAVPADG--RGERPHDGSQDEAP 212

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSAN 280
               D     A +   ++  ++  +      L  V+  + G  +P           +  +
Sbjct: 213 PPLTDFGAALAEQVMAVDCRLEAVLGRITLPLAQVLDWQPGDTVPLPQATLDHILFVGLD 272

Query: 281 GKEIYSCELGRVGKNYTIR 299
           G  +    LG+      +R
Sbjct: 273 GHPVAEGRLGQHRGMRAVR 291


>gi|332558593|ref|ZP_08412915.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
 gi|332276305|gb|EGJ21620.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides WS8N]
          Length = 323

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 79/259 (30%), Gaps = 9/259 (3%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +  ++   L +D+    C     + ++   ++    +            I  +  L+ 
Sbjct: 37  LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFHAVLEGPG-EGLGLIALAPPLLA 95

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFY 164
            L+E               R  S  +  + +  I +  A L+  +   +     +   + 
Sbjct: 96  GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLLEDEDRVWASGFRYA 154

Query: 165 DIDYLKKNTNRLSNEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                 +    L  +    V    + + +   +   +L +P +   +       SQ+++ 
Sbjct: 155 SFLDDPRPLGLLLEDCSYRVLVAEVELALGAKSGQLLLAVPADG--RGERPHDGSQDEAP 212

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSAN 280
               D     A +   ++  ++  +      L  V+  + G  +P           +  +
Sbjct: 213 PPLTDFGAALAEQVMAVDCRLEAVLGRITLPLAQVLDWQPGDTVPLPQATLDHILFVGLD 272

Query: 281 GKEIYSCELGRVGKNYTIR 299
           G  +    LG+      +R
Sbjct: 273 GHPVAEGRLGQHRGMRAVR 291


>gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
 gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
          Length = 334

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 14/291 (4%)

Query: 14  HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
           H  ++ R+     D     ++  +     +  L +       L + ++         +H+
Sbjct: 10  HSSVIQRMAQAARDGSDSRQM--TPVKALRLSLARAADTLFGLGLTVATVEQMRVPLAHV 67

Query: 74  IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
             S  +  +          +   +   +  +  L+E     S         R+ +  +  
Sbjct: 68  GRSLGDAGLLVLLEGDG-GARGALCLDSQFLAGLIEVQTTGSVR-PGLARPRAATRTDAA 125

Query: 134 LAKRTIA----QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +    I     +  + L Q             D  +            +  +  + +++ 
Sbjct: 126 MVAPLIDAVLTEFESQLAQEHDAPPPRRFGFGDMVEDLRGLSLLLVAPDFELLRLTVDLG 185

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
                    L++P          + +S  K  N   +      +      V +D  +   
Sbjct: 186 PGAKTGRLDLLLPVIA-----SPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARL 240

Query: 250 KTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +  L+D++ LK G ++PF         ++   G  + + ELG++     +R
Sbjct: 241 RLPLRDILALKPGDLLPFQRETLNDTQLVGTRGHIVATAELGQMNGLRALR 291


>gi|99081347|ref|YP_613501.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
           TM1040]
 gi|99037627|gb|ABF64239.1| hypothetical protein TM1040_1506 [Ruegeria sp. TM1040]
          Length = 420

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 79/252 (31%), Gaps = 27/252 (10%)

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL-----LENLLGASH 116
             + Q+ +    +     +                       V  L     +  +LG S 
Sbjct: 59  IAARQTNRVPEDLTGLLSDKHLLVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSG 118

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +       R+ +  +  +    + ++ A ++  +    + S      +        T  L
Sbjct: 119 D------ERNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVL 172

Query: 177 SNEF----VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
             E     V  +N+++    +     L++P+ ++           ++ +  +        
Sbjct: 173 GMEAEDYRVINLNVDLATGKMQGEICLVLPEPSV-----------DEYDEANAIRGPRLG 221

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGR 291
                +   +   +   +  L+   TLK+G+++P          L A NG+ I    LG+
Sbjct: 222 SSVGSMRAELTAVLCKMRVPLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQ 281

Query: 292 VGKNYTIRITDR 303
           +     +R+  +
Sbjct: 282 MNGARAVRLDQQ 293


>gi|91223207|ref|ZP_01258473.1| putative flagellar motor switch protein [Vibrio alginolyticus
           12G01]
 gi|91192020|gb|EAS78283.1| putative flagellar motor switch protein [Vibrio alginolyticus
           12G01]
          Length = 272

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 33/241 (13%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
           V+ S TS    +F+    S + +   +           FI  + + +I L +   GAS E
Sbjct: 55  VEASLTSVDLHRFT----SVEMDKEQTSTYQHQEGGMVFIHGNPHTLIKLADRFYGASAE 110

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
                    L+  + +L +R    I            E                      
Sbjct: 111 RSAAT----LTASDLRLQERISRII-----IGWLAPGEMW------------DTGEYETP 149

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
                 + +N+  ++   S  L +    L++T +  L  Q        DL  PF R    
Sbjct: 150 RGIGINVQLNIAFDDHQGSIHLKL-DGHLIQTLIEQLELQP-----DTDLFQPFCRSLET 203

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
             V ++  ++ KK  L DVV L+   ++P          +S   + +++  +        
Sbjct: 204 TPVRLNVVLSKKKMPLSDVVGLQPNDILPIEL--LNTVPVSIGNQSLFTGRIAEQDGQLV 261

Query: 298 I 298
           +
Sbjct: 262 L 262


>gi|90577377|ref|ZP_01233188.1| putative flagellar motor switch protein [Vibrio angustum S14]
 gi|90440463|gb|EAS65643.1| putative flagellar motor switch protein [Vibrio angustum S14]
          Length = 257

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 82/223 (36%), Gaps = 27/223 (12%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            ++  F+     +        CS  L+I L +    +    +    +++++T + +L +R
Sbjct: 56  GQHAAFTVLH--NDGGMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQER 113

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
            I ++ +                      D  +   N LS++    I +++T E      
Sbjct: 114 -IGRLFSA----------------QIAPEDMWQPCDNSLSDDIGLFIQLSVTCEETIGDI 156

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           ++ I    L++T    +  Q  S     +L   F+++     V ++T +  K+  L  V+
Sbjct: 157 IICI-DSALIQTLTSVIGLQPTS-----ELNALFSQQLESTKVKLNTVLCEKQMPLDQVL 210

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            LK G +      + +    S   + +++  +        + I
Sbjct: 211 QLKPGDIFDIDLLQSSPI--SIGQEHLFNGHVAEQNGQLVLII 251


>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
 gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
          Length = 547

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 99/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS    ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPHVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET---- 205
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P       
Sbjct: 368 EKMDMTPPEVKFVTLREEMEYLGEAMEGDELVQITFNIEIGDLLQSKMYQILPISEAKEM 427

Query: 206 ---LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV------------------NIDT 244
              LL   +     Q + E + ED++ P  +      V                  N+  
Sbjct: 428 VRRLLYPMVEGQEEQIEEEIEEEDIVAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKTL 547


>gi|126736779|ref|ZP_01752517.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2]
 gi|126713750|gb|EBA10623.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2]
          Length = 364

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 95/291 (32%), Gaps = 18/291 (6%)

Query: 17  LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           LL R+T   G  + +     +     +  L K   + + L + +   + +      ++ +
Sbjct: 9   LLRRMTRPQG--QEVADNPLTSSRAVRLALTKAANDTVGLVLTVQSVAEEVTSLDDMLGT 66

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
             +  +              I     +   +LE     +    P    R+ +  +K L  
Sbjct: 67  LADELMLVALE-RDGGLAGLIALDMEMRAAVLEMETMGAVLAHPA-EARAPTLTDKTLCD 124

Query: 137 RTIAQISAV-----LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
             +    +      L+  +    + S  L    +            +  +  +++++ + 
Sbjct: 125 PLLQAFLSAFPLAVLDTPLEGWMD-SVVLGHKIESTRAAGLVLADRDYRIVRLSVDLGVA 183

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              +  V+++P        +        +     D    F  +       +D  ++    
Sbjct: 184 ERQAELVIVLP-------VVQHAPEPETTPETFFDWDSDFQDRVSDAPARLDALLHRFPI 236

Query: 252 TLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +L     L++G V+P       +  +LS +G E+   +LG++G    +R+ 
Sbjct: 237 SLATAQGLQVGSVLPLPGCTVNSVRLLSPDGHEVAQAKLGQIGGYRAVRLE 287


>gi|89072282|ref|ZP_01158861.1| putative flagellar motor switch protein [Photobacterium sp. SKA34]
 gi|89051814|gb|EAR57266.1| putative flagellar motor switch protein [Photobacterium sp. SKA34]
          Length = 257

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 82/223 (36%), Gaps = 27/223 (12%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            ++  F+ A   +        CS  L+I L +              NR L++V+ ++  +
Sbjct: 56  GQHTAFTVAH--NDGGMMNFRCSAPLLIALADRFY-------HSPVNR-LNSVKSQVITK 105

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
           +  ++   + Q  S               +  +   + LS++    I +++T E      
Sbjct: 106 SDLRLQERIGQLFSA---------QVAPEEMWQACDSSLSDDIGLVIQLSVTCEETIGDI 156

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
           ++ I    L++T    +  Q  S     +L   F+++     V ++T +  K+  L  V+
Sbjct: 157 IICI-DSALIQTLTSVIGLQPTS-----ELNALFSQQLESTKVKLNTVLCEKQMPLDQVL 210

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            LK G +      + +    S   + +++  +        + I
Sbjct: 211 QLKPGDIFDIDLMQSSTI--SIGQEYLFNGHVAEQNGQLVLII 251


>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
 gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
           TCF52B]
          Length = 365

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 120/352 (34%), Gaps = 59/352 (16%)

Query: 18  LARLTGKLGDKKTIEKISSSL----GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
           L  L  +L + + + +I   +    G +            +   VDI+  +    K S I
Sbjct: 12  LDSLLNQLNEDEDLTEIEKDMFGEIGNIIMGSGTTALSTLLGRKVDITVPTVDLKKISEI 71

Query: 74  IHSF-KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
                 +N V S     +      +     LV  +   ++G + E    ++   SLS V 
Sbjct: 72  KKEVTGKNAVVSIHFKGAIEGLNALIIPQMLVAQIANIMMGGTGEVENEEVDEISLSAVS 131

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS---NEFVTTINMNM 188
           + + +  +   +  L+  +    + +P   +  D D    N   ++   +  V  +N  +
Sbjct: 132 EAMNQM-MGAAATSLSDMLKKPVDITPPTVELIDFDGDNVNFPPIATSDDAVVAKVNFKL 190

Query: 189 TIENVA-SSFVLIIP-------QETLLK----TTLISLSSQNKSENQSEDLIDPFARKTY 236
            IE +  + F L +P          + +      + S ++   S   +++  +  A  T 
Sbjct: 191 VIEGLEPADFFLAMPPEFVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTK 250

Query: 237 QLN-----------------------------------VNIDTRINLKK--TTLKDVVTL 259
            +                                    + ++  + L K   TLK V+ L
Sbjct: 251 NVEKNPVSVSPVQFQSFESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMEL 310

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
            +G +I           +  NGK I   E+  + +N+ +RIT+ +   ++  
Sbjct: 311 SVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVTPQERFY 362


>gi|83949668|ref|ZP_00958401.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM]
 gi|83837567|gb|EAP76863.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM]
          Length = 339

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 69/255 (27%), Gaps = 16/255 (6%)

Query: 56  LDVDISYTSCQSGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113
           L + +S ++ +  + S   +        +              +      +  ++E    
Sbjct: 44  LGLALSVSTVEQSRLSQKDLPEVLAGTGLTCLVE-DDRGRRGAVRLDFPALSAVIEIQTI 102

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
                  ++  R L+  +  L    +  +            +        +       ++
Sbjct: 103 GRVAE-REVVERPLTRTDAALCAPLLDAVFEAFETGAEDLPDGQSWQGYRFGAMAEDAHS 161

Query: 174 NRLSNEF----VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229
             L+ E     +  + + +     A  + L++P   +    +              D   
Sbjct: 162 LSLALEADHYHLFRVGVMLGEAKRAGVYELLLP--VMDAPQVSKEKPGRP-----RDEPR 214

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCE 288
             +       V +   +      L+  ++LK G  +           L A  G  +    
Sbjct: 215 ALSPVVMGAPVTLQAILARHSIPLEKALSLKAGDQLIVPGSGAMALRLEAPGGHLVSDGR 274

Query: 289 LGRVGKNYTIRITDR 303
           LG+V     IR+  +
Sbjct: 275 LGQVNGMRAIRLRKQ 289


>gi|126462567|ref|YP_001043681.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104231|gb|ABN76909.1| surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 323

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 80/259 (30%), Gaps = 9/259 (3%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +  ++   L +D+    C     + ++   ++    +            I  +  L+ 
Sbjct: 37  LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFHAVLEGPG-EGLGLIALAPPLLA 95

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFY 164
            L+E               R  S  +  + +  I +  A L+  +   +     +   + 
Sbjct: 96  GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLLEDEDRVWASGFRYA 154

Query: 165 DIDYLKKNTNRLSNEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
                 +    L  +    V    + + +   +   +L +P +   +       SQ++++
Sbjct: 155 SFLDDPRPLGLLLEDCSYRVLVAEVELALGAKSGQLLLAVPADG--RGERPHDGSQDEAQ 212

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSAN 280
               D     A +   ++  ++  +      L  V+  + G  +P           +  +
Sbjct: 213 PPLTDFAAALAEQVMAVDCRLEAVLGRITLPLAHVLDWQPGDTVPLPQATLDHILFVGLD 272

Query: 281 GKEIYSCELGRVGKNYTIR 299
           G  +    LG+      +R
Sbjct: 273 GHPVAEGRLGQHRGMRAVR 291


>gi|89070387|ref|ZP_01157694.1| possible flagellar switch protein FliM [Oceanicola granulosus
           HTCC2516]
 gi|89044034|gb|EAR50209.1| possible flagellar switch protein FliM [Oceanicola granulosus
           HTCC2516]
          Length = 381

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 66/243 (27%), Gaps = 24/243 (9%)

Query: 72  HIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
            ++     ++ V + A     S          L   L+E     +    P    R +S  
Sbjct: 54  EVVARLGTDDLVLALAGAEGVSG--LAALDPELRSALVECQTTGAVSPEPAPE-RPVSVA 110

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-----VTTIN 185
           +  L +  +      L    + T  +    E       L        +       +  + 
Sbjct: 111 DAALTRPVVDAFLEELLAAAAPTALAGWG-EGVATAGRLDGARGAGLSLAEAGYRLVALT 169

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           +++         ++ +P             ++      + D    FAR        +   
Sbjct: 170 VDLGAGTREGRLLVALP-------------AREAPAPTASDWSGQFARAVQAAPAELRAV 216

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS-CELGRVGKNYTIRITDRI 304
           ++  +  L+    L  GQV+P          L    + +     LG+      IR+    
Sbjct: 217 LHRFELPLERAEALAPGQVLPLEGVTVASVRLEGAERALVGHARLGQSAGLKAIRLGPPP 276

Query: 305 NFD 307
             +
Sbjct: 277 RPE 279


>gi|221639608|ref|YP_002525870.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides KD131]
 gi|221160389|gb|ACM01369.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
           sphaeroides KD131]
          Length = 331

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 83/263 (31%), Gaps = 17/263 (6%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +  ++   L +D+    C     + ++   ++   ++            I  +  L+ 
Sbjct: 45  LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFYAVLEGPG-EGLGLIALAPPLLA 103

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--------QCISTTQESS 157
            L+E               R  S  +  + +  I +  A L+        +  +     +
Sbjct: 104 GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLIEDEDRVWAGGFRYA 162

Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
             L+D   +  L ++        V    +++ +       +L +P +   +  L     Q
Sbjct: 163 SFLDDPRPLGLLLEDCPYR----VLVAEVDLALGAKTGQLLLAVPADG--RGELPHHGGQ 216

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAI 276
           +++     D     A +   ++  ++  +      L  V+  + G  +P           
Sbjct: 217 DEAPPPLSDFGAAMAEQVMAVDCRLEAVLGRITLPLAHVLDWQPGDTVPLPQATLDHILF 276

Query: 277 LSANGKEIYSCELGRVGKNYTIR 299
           +  +G  +    LG+      +R
Sbjct: 277 VGLDGHPVAEGRLGQHRGMRAVR 299


>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
 gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
           49179]
          Length = 292

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 88/261 (33%), Gaps = 29/261 (11%)

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
               I  F E+           +    +     +   L + ++G    +   L    L  
Sbjct: 35  VGDFI--FIEHASVVVQVKPQTNVTITLAVPVPMATALADLMVGGEGTSKQTLEKDDLDA 92

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           + K++       ++  L       QE  P L  F   + +      L + +         
Sbjct: 93  I-KEIGSNIFGALTTALQ-----AQEVIPKLS-FEVSEAVDAQDASLLDPYSDGYEFGFE 145

Query: 190 IENVASSFVL-------------IIPQETLLK---TTLISLSSQNKSENQSEDLIDPFAR 233
           +E V SSF +             + PQ T       ++ +L        +S+  ++    
Sbjct: 146 LEQVKSSFFIFCGGVFIDLFKKKVAPQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEA 205

Query: 234 K----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           +       + +N+  RI  KK  LKDVV++ IG VI           +  + K I   E+
Sbjct: 206 RNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEV 265

Query: 290 GRVGKNYTIRITDRINFDQKS 310
             V  N+ I+ITD  +   + 
Sbjct: 266 VIVDGNFGIQITDIGSKRDRL 286


>gi|330447939|ref|ZP_08311587.1| surface presentation of antigens family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492130|dbj|GAA06084.1| surface presentation of antigens family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 255

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 74/209 (35%), Gaps = 25/209 (11%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                  CS  L+I+L +    +    +  + ++ L+  + +L +R     ++V      
Sbjct: 66  GGMINFRCSAPLLISLSDRFYNSPVSRLNSVKSQVLTASDFRLQQRLGHLFASV------ 119

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
                          D   +  N LS +    I ++++ E+   +  + I       + L
Sbjct: 120 -----------IAPEDMWNECDNSLSGDIGLVIQLDVSCEDTLGTITICI------DSCL 162

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           I   +        +++ + F ++     V ++T +  K+  L  V+ LK G V      +
Sbjct: 163 IQTLTTVIGLQPIDNINEQFTKQLESTKVVLNTILCEKQMPLDQVLQLKPGDVFDIDLIQ 222

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +    S   + +++  +        + I
Sbjct: 223 SSPI--SIGQEHLFNGHVAEQNGQLVLII 249


>gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
 gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
          Length = 368

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 73/273 (26%), Gaps = 15/273 (5%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           S     ++ L +      DL +     + +S     ++       +          +   
Sbjct: 2   SPAKALRRALSRTADVMWDLALVTQSVTVESLDQDGVVEGLSAKDLLVLLDGPD-GTIGL 60

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
                 ++  ++E         +P   +R L+  +  +    I      +   ++ +   
Sbjct: 61  ASVDRQVMTGVVEVQTIQQVTQMPVDEDRVLTQTDAAMIAPLIDGTLHSMAGALADSPIG 120

Query: 157 S----PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
                       +           +        +++ +         I+P          
Sbjct: 121 EMLQGFRFGAMLEDARSASLLLDAAGYRAFRAQVDLALGRRKGCLSFILP------ERKP 174

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
              S  +      D   P A    ++   +D  ++     L    TLK G V+       
Sbjct: 175 VPRSAEQGG---ADAAGPHAAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDAL 231

Query: 273 TCAILSAN-GKEIYSCELGRVGKNYTIRITDRI 304
               + A  G  +    +G++     +R+T  +
Sbjct: 232 DRVEIIAGRGHMVAKGRMGQLNGARAVRLTWPV 264


>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
           Lithuania75]
          Length = 287

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 22/254 (8%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +     + S       S          LV  L + +LG    +  ++ N  L    K
Sbjct: 42  LISTPYARVMVSVIEKEESSIELLAPVD--LVTALSDLMLGGEGASKEEMDNDDLDAF-K 98

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++A      I+  L       QE  P L        + K   +  + +   +  +  +E 
Sbjct: 99  EMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKED-YAKAMVFSFKMEA 152

Query: 193 VASSFVLIIPQETLLKT------TLISLSSQNKSENQSEDLIDPFARKTY------QLNV 240
           +  S ++++      +            ++Q  +E            +         + +
Sbjct: 153 ITESQIILLTTAAFERQFEKTHKEEKEETTQGAAEEVKTHDASLENIEIRNISMLLDVKL 212

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+I
Sbjct: 213 NVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQI 272

Query: 301 TDRINFDQKSLKNF 314
           TD I   ++ L+  
Sbjct: 273 TD-IGTKKERLEQL 285


>gi|254465099|ref|ZP_05078510.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
 gi|206686007|gb|EDZ46489.1| Surface presentation of antigens protein [Rhodobacterales bacterium
           Y4I]
          Length = 430

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 87/286 (30%), Gaps = 30/286 (10%)

Query: 22  TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS-FKEN 80
           +G +    T++ +  SL                 L + +   + Q  + S  +     + 
Sbjct: 35  SGAISSSLTLKALRRSLARAAADLCE--------LPLAV-LAARQCNRVSEDLARNLSDK 85

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLEN-LLGASHETIPQLYNRSLSTVEKKLAK--- 136
            +       +             V  L++   +GA          R  +  +  +     
Sbjct: 86  DLLVVLDCPN-GRVGAASMDAATVTALIQQQTIGA--VIGKAPNERLYTPTDAAMTAEFL 142

Query: 137 -RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVA 194
            R+ A++ ++L         +        + +         ++++ V  +N+++    + 
Sbjct: 143 ERSFAKVVSMLEGQADQAIFAGYRFGAQVE-NVRSLVLGMEADDYRVIELNLDLACGAMQ 201

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
               LI+P+ T  +                        R    +   +   +   +  L+
Sbjct: 202 GVMKLILPEPTAEELQESQGGGAQGP---------SLGRNLDSIRAELTAVLCKMRVPLR 252

Query: 255 DVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIR 299
           D  +LKIG  +P           L+  GK +    LG++  +  +R
Sbjct: 253 DFTSLKIGDTLPLDQAFLYETDLLTIGGKPVAQGRLGQMNGSRAVR 298


>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
 gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
           mobilis SJ95]
          Length = 372

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 103/311 (33%), Gaps = 52/311 (16%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNFFIGCSNNLVITL 107
                +   ++I Y      KF +II +F  EN V +            +    NL   +
Sbjct: 61  TLSTLLRRKIEIQYPQTDIIKFKNIITNFEGENVVVTVEYKKGLYGLNTLVLPLNLTNII 120

Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTTQESSPNLEDF 163
            + +LG     +  +  R L  +        + Q+    S  L+  + T  + SP     
Sbjct: 121 ADLMLGKD---LENIEERELDDISLSAVSEAMNQMMGTASTALSDFLKTNIDISPPSSRV 177

Query: 164 YDIDYLKKNTNRLS---NEFVTTINMNMTIENVASSFVL-IIPQ------ETLLKTTLIS 213
            +          +      +V +I  N+ I  +A +     IP         L++ T   
Sbjct: 178 VNFSEANIEFPPIETDKEAYVISIKFNVKINGIAETTFWQFIPMKFAQKIRELVEKTFGK 237

Query: 214 LSSQNKSENQSEDLIDPFARKTYQ--------------------------------LNVN 241
            +   +S   S       +    +                                L+V 
Sbjct: 238 TTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVP 297

Query: 242 IDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           ++ ++ L  T L  ++++ L  G +I           + ANG+ I   E+  + +N+ IR
Sbjct: 298 LELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIR 357

Query: 300 ITDRINFDQKS 310
           +T+ ++  ++ 
Sbjct: 358 VTEIVSLRERM 368


>gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP
           102972]
 gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP
           102972]
          Length = 256

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 33/221 (14%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               F+   ++++ITL +   GA+      +    L++ +++L +R    ++        
Sbjct: 69  GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 119

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
             QE     E              + N       +++   +      LI+      ++ L
Sbjct: 120 APQEMWQLHE------------GDIGNGIGLKAELSVRYADQHGVLTLIM------ESQL 161

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +           + +L   F R      V ++  ++ K   L DV+ L    ++P     
Sbjct: 162 VQTLIDQLDLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSDVLRLTPNDILPIDL-- 219

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +   +S   + ++S  +        +     +N D++SL+
Sbjct: 220 LSTVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 256


>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
 gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
          Length = 284

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 100/263 (38%), Gaps = 19/263 (7%)

Query: 66  QSGKFSHI----IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           + G+ +       +  K   V +  +LS   ++   I C+  L+  + E ++G       
Sbjct: 26  EIGERNEFDAPAQNGIKPPVVMASVTLSGDINAKAEIACTPVLISAVSEWMMG----EEE 81

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
              N +L + E   AK   + + +  +  +   +       +  ++++L +N++   + F
Sbjct: 82  ISKNENLGSDELDAAKEIFSNLFSAFSTSLGAQKGMPKISFEVINVNFLDENSSLDFSVF 141

Query: 181 VTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQ- 237
                 N+ IE++      +     +   +          K+      L   F+ +  + 
Sbjct: 142 EKLFLFNIKIEDLNEHVAFVCDHTLMRFFEPAKSEPVDAAKAAAAPHALKGEFSAEEMRN 201

Query: 238 ----LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
               ++V +  R+ +      LKDV+T+ IG VI           +    K I   E+  
Sbjct: 202 IGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIGDKVIALGEVVI 261

Query: 292 VGKNYTIRITDRINFDQKSLKNF 314
           +  N+ I+IT +I   ++ L+  
Sbjct: 262 IDGNFGIQIT-QIGSKRERLQQL 283


>gi|269967104|ref|ZP_06181171.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828241|gb|EEZ82508.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 218

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 29/207 (14%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               FI  + + +I L +   GAS E         L+  + +L +R    I         
Sbjct: 31  GGMVFIHGNPHTLIKLADRFYGASAERSAAT----LTASDLRLQERISRII-----IGWL 81

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              E                            + +N+  ++   S  L +    L++T +
Sbjct: 82  APGEMW------------DTGEYETPRGIGINVQLNIAFDDHQGSIHLKL-DGHLIQTLI 128

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             L  Q        DL  PF R      V ++  ++ KK  L DVV L+   ++P     
Sbjct: 129 EQLELQP-----DTDLFQPFCRSLETTPVRLNVVLSKKKMPLSDVVGLQPNDILPIEL-- 181

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTI 298
                +S   + +++  +        +
Sbjct: 182 LNTVPVSIGNQSLFTGRIAEQDGQLVL 208


>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
           SouthAfrica7]
          Length = 282

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 19/253 (7%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
           + +I +     + S    S             LV  L + +LG    +  ++ N  L   
Sbjct: 38  ADLISAPYARVMISAIDKSESHIELLAPVG--LVTALSDLMLGGEGASKEEMDNDDLDAF 95

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
            K++A      I+  L       QE  P L        + K+  +  + +   +  +  +
Sbjct: 96  -KEMASNIFGAIATSLKS-----QELLPKLNFTTTNAEIAKDLPKKED-YTKAMVFSFKM 148

Query: 191 EN-VASSFVLII--PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY------QLNVN 241
           E    S  +L++    E+  +T     S+++ +E            +         + +N
Sbjct: 149 EALKESQMILLVTSAFESQFETKKEPESAESATEETKTHDASLENIEIRNISMLLDVKLN 208

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+IT
Sbjct: 209 VKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT 268

Query: 302 DRINFDQKSLKNF 314
           D I   ++ L+  
Sbjct: 269 D-IGTKKERLEQL 280


>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
 gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
          Length = 547

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 101/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + +S    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVESINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMKVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244
               L           + + + E   E ++ P   ++  Q+              +N+  
Sbjct: 428 VRRLLYPMMEEEEEIVTEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
 gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
          Length = 343

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 98/287 (34%), Gaps = 31/287 (10%)

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLG 113
             +V ++           ++ SF E  V  Q   S      F I    +L   + + ++G
Sbjct: 50  GREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFPQSLGARIADMMMG 109

Query: 114 ASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
            S E    +L    LS + + + +   +  +++  Q       S   ++     +    N
Sbjct: 110 GSGEPESFELDEVRLSAITETMNQMMGSSTTSLSEQTKKKVSISKLKVDLVKKDEEPVLN 169

Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIP-------QETLLKTTLISLSSQ-------- 217
            N           +++   +  S  +LI P        + +          +        
Sbjct: 170 FNLAQVLAYVAYEIDLENSHK-SKILLIAPALFFKDIYKIIHPAQEPEKEKEQKREEEKV 228

Query: 218 ----------NKSENQSEDLIDPFARKTYQL-NVNIDTRINL--KKTTLKDVVTLKIGQV 264
                     ++S+  +      F+ K   L +V +   + L   K TLK V+ + IG +
Sbjct: 229 KVQPVQFQEFDQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSL 288

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           I           +  NG+ I   E+  V +N+ +RIT+ +   Q+  
Sbjct: 289 IELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRIY 335


>gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 272

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 33/221 (14%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
               F+   ++++ITL +   GA+      +    L++ +++L +R    ++        
Sbjct: 85  GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 135

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
             QE     E              + N       +++   +      LI+      ++ L
Sbjct: 136 APQEMWQLHE------------GDIGNGIGLKAELSVRYADQHGVLTLIM------ESQL 177

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +           + +L   F R      V ++  ++ K   L +V+ L    ++P     
Sbjct: 178 VQTLIDQLDLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSEVLRLTPNDILPIDL-- 235

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +   +S   + ++S  +        +     +N D++SL+
Sbjct: 236 LSTVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 272


>gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228]
 gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20]
 gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228]
 gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20]
          Length = 278

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 15/247 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++        I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKPPLVYAVFNIKE-GGKIGILAGAVLMSAIGEWMMG----EEEISKNDQLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++      +    +++ +N +    +F      ++ IE++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFEISSCEFVAENVDFK--DFTKLYFFDVKIEDLE 151

Query: 195 SSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRIN 247
               LI+ Q    + +   +      S + SE+     + +         + + +  RI 
Sbjct: 152 EQISLIVDQTLHNILSGKAADDGHAHSSSNSENKGFEISEELKNINLIMDVRLPVRVRIG 211

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I   
Sbjct: 212 NKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IGSK 270

Query: 308 QKSLKNF 314
           ++ L+  
Sbjct: 271 KERLEQL 277


>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
          Length = 546

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISIPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329]
          Length = 321

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGTQE 319


>gi|260432994|ref|ZP_05786965.1| surface presentation of antigens protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416822|gb|EEX10081.1| surface presentation of antigens protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 331

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 81/271 (29%), Gaps = 26/271 (9%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L +   E+  L   +   + QSG+    +    +         +       +     LV 
Sbjct: 3   LARAAVERFRLSASV-IGAKQSGRRQEAVTEGLDESRLFLLFAADEQRVACLAMDPGLVA 61

Query: 106 TLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
            +++       E  P     R  +  +  +    + ++ A   Q +   ++ +       
Sbjct: 62  AVIQKQ--TIGEVSPDPPPVRKFTDTDAAIVAPLVEEMLARGAQLVEEPEDKA----RLS 115

Query: 165 DIDYLKKNTNRLSNEFVTT--------INMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
             ++L + +   +              + + +          L++P            + 
Sbjct: 116 GYEFLSRASGLRAVSLALVQDVYDVFDLTVELEGGVRQGVVSLLLP---------PQSAK 166

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            +  E Q  +     A  +  L   +   I      L ++  L  G+V+P  +       
Sbjct: 167 PDSHEEQGAEGGAKLADASGVLRAELTAVIAQMHLPLSELSALTEGKVLPLSNARLDRIA 226

Query: 277 LSANGKE-IYSCELGRVGKNYTIRITDRINF 306
           + A  +  + +  LG+ G    +R+ +    
Sbjct: 227 MQAIDRTRVATGRLGQCGGMRAVRLNEAHAS 257


>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
 gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
          Length = 547

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 99/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244
               L             + + E  +  ++ P   K  +              + +N+  
Sbjct: 428 VRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQIEPVYIDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
 gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
 gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
          Length = 547

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 99/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244
               L             + + E  +  ++ P   K  +              + +N+  
Sbjct: 428 VRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
 gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
          Length = 545

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 427 VRRLLYPMVEEEETATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545


>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 545

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545


>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
 gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 545

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545


>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
 gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 546

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
 gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
 gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
 gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
 gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
          Length = 545

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545


>gi|114798089|ref|YP_759234.1| SPOA domain-containing protein [Hyphomonas neptunium ATCC 15444]
 gi|114738263|gb|ABI76388.1| SPOA domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 325

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 77/277 (27%), Gaps = 31/277 (11%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF-VFSQASLSS 90
            +            L +  +E   L    S         +  + +  E        S + 
Sbjct: 62  GEAREEAARRISARLSRAMREHCGLAAAFSVKRVSPASLAQAVSARDEPGQAIVCCSGAD 121

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 +     L   ++E   G     +P    ++LS ++  L +              
Sbjct: 122 GDVAAMLVIGAGLAQIMIETACGG---PVPNGQPKALSPIDLALVEGL------------ 166

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-LKT 209
             T+  +P +        ++ +    ++     +   +T+   A       P   L LK 
Sbjct: 167 --TRPLAPFIGRGLGFAGVETDPLFAASIAAPGVAYEITLSVRAGGADW--PARLLVLKP 222

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            L        +  +                V +  R+   +  +  + +L+ G  +    
Sbjct: 223 FLAEAPEAEAAPTRGAHASGAL-------TVLMTARVARVEMPISRLTSLRPGVTLLLGV 275

Query: 270 REKTCAILSANGKE---IYSCELGRVGKNYTIRITDR 303
                  L + G +       ++GR G    +RI+ R
Sbjct: 276 PADQPVELLSGGLDGDVAAEAQIGRKGNRMALRISKR 312


>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
 gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
          Length = 360

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 117/357 (32%), Gaps = 62/357 (17%)

Query: 1   MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
           + G +     +P   +          D+  ++ I   +G +          + ++  V I
Sbjct: 15  LNGSASTPEPTPTDTL----------DQTQVDIIG-EIGNISMSQAATTLSDILNHRVTI 63

Query: 61  SYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETI 119
           +     + KF  II +     V +          +  +  +    I + + ++       
Sbjct: 64  TTPVVSTLKFQEIIDASVTPKVVTTIEFKKGLEGSNLLMMNERDAIIIADLMMDGDGN-- 121

Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN----TNR 175
               N+  + +E       + Q+       ++T  E   ++       +  +N       
Sbjct: 122 --PENKEFTELELSAVGEAMNQMMGSAATAMATMLERIVDILPPDVEVWKDQNNVTYDRI 179

Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS-----QNKSENQSEDLID 229
             +  V  I   MT+ + + S  + +   +T+   + I L+      Q++   Q+E++  
Sbjct: 180 SGDTMVCKIAFQMTVGDFIESEIMQVFTLDTVRNISKIVLADEGEVIQDRQLPQAEEMTA 239

Query: 230 PFA------------------------------------RKTYQLNVNIDTRINLKKTTL 253
           P A                                         + +     +   K T+
Sbjct: 240 PIAPAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNLDLIMDVPLQFSVMLGESKKTI 299

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           KD+++L  G V+           +  NGK I   E+  + +++ IRIT+ ++ +Q+ 
Sbjct: 300 KDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVINESFGIRITNILSKEQRI 356


>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
 gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
          Length = 546

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|259416357|ref|ZP_05740277.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
 gi|259347796|gb|EEW59573.1| surface presentation of antigens protein [Silicibacter sp.
           TrichCH4B]
          Length = 432

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 76/252 (30%), Gaps = 27/252 (10%)

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE-----NLLGASH 116
             + Q+ +    +     +                       V  L++      +LG S 
Sbjct: 59  IAARQTNRVPEDLTGLLSDKHLLVVLDCPEGRIGAATLDAAAVTALIQQQTMGTVLGMSG 118

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
           +       R+ +  +  +    + ++   +   +    +        +        T  L
Sbjct: 119 D------ERNYTPTDAAMVAEFLEKLFGKVTNLLEDQSDLRIFEGYRFGAQVEDVRTLVL 172

Query: 177 SNEF----VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
             E     V  +N+++    +     L++P+ ++           ++ +  +        
Sbjct: 173 GMEADDYRVINLNVDLATGKMQGEICLVLPEPSV-----------DEYDEANAVRGPRLG 221

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGR 291
                +   +   +   +  L+    LK+G+++P          L A NG+ I    LG+
Sbjct: 222 SSVGSMRAELSAVLCKMRIPLRQFSALKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQ 281

Query: 292 VGKNYTIRITDR 303
           +     +R+  +
Sbjct: 282 MNGARAVRLDQQ 293


>gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ3810]
 gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ3810]
          Length = 321

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGTQE 319


>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
 gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
          Length = 546

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
 gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
          Length = 546

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
 gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
 gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
          Length = 546

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus K5030]
 gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AN-5034]
 gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           parahaemolyticus K5030]
          Length = 321

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGTQE 319


>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
 gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
          Length = 545

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGVKVTKSL 545


>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 546

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGVKVTKSL 546


>gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 328

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V  +
Sbjct: 253 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 312

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 313 LGVRVLELFGGTQE 326


>gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
 gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria IOP40-10]
          Length = 309

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            T+   +S+ + ++Q   ++D  A +   L V ++     ++ T+ DV  L  G V+P  
Sbjct: 210 MTMHEQASEMRGDSQ-PGMMDGQAFQVDALPVKLEFAFRQRELTVADVARLHPGAVLPLD 268

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
              +    + ANG+ +   EL +VG+   + I 
Sbjct: 269 AGAEHEVKIYANGRYLALGELIQVGERLAVEIQ 301


>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
 gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
          Length = 287

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 95/288 (32%), Gaps = 21/288 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   ++ +   +  +I +     + S       S       
Sbjct: 10  QEVVSTLEGLVGKASSVGLEKEVSNSE-EAWESLISAPYARVMVSAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214
           L        + K   +  +       +  M     +   +L       Q           
Sbjct: 121 LNFTTTNAEIAKELPKKEDYTKAMVFSFKMEAIKESQIILLTTAAFECQFEKTHKEEKEE 180

Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           ++Q+ +E            +         + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 TTQSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                   +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
 gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
          Length = 545

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPIAEAKEM 426

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545


>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
           Sheeba]
 gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 283

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 16/222 (7%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
            LV TL + +LG    +  ++ N  L    K++A      I+  L       QE  P L 
Sbjct: 67  GLVTTLSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 120

Query: 162 DFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLI----IPQETLLKTTLISLSS 216
                  + K   +  +       +  M     +   +L+    I Q    K      + 
Sbjct: 121 FTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLVTTDFINQFETKKEHNEEGTK 180

Query: 217 QNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
             + +   +  ++    +       + +N+  RI  KK  LKDVV++ IG V+       
Sbjct: 181 VVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 240

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 241 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 281


>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
 gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
          Length = 287

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 20/255 (7%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I +     V S       S          LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISAPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMT 189
            K++A      I+  L       QE  P L        + K   +  +   +   +  M 
Sbjct: 98  -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIAFSFKME 151

Query: 190 IENVASSFVLIIP------QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLN 239
               +   +L         ++T  +    +  S  +     ++ ++    +       + 
Sbjct: 152 ALKESQIILLTTAAFEHQFEKTHQEEKEETTKSATEEVKTKDESLENIEIRNISMLLDVK 211

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+
Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271

Query: 300 ITDRINFDQKSLKNF 314
           ITD I   ++ L+  
Sbjct: 272 ITD-IGTKKERLEQL 285


>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 546

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
 gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
           mendocina NK-01]
          Length = 279

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 17/193 (8%)

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
                 L+   LE   G +   +P      +ST E+++  R    +S +  + I      
Sbjct: 86  FAMDRPLLTEALECYYGGTC--LPNHEETPVSTSEQRMRTRLGLDVSQLFARSI--LAGQ 141

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
           +    + YD  Y +        E+V   N    I    +S  +       L T L+   +
Sbjct: 142 TFGKLEPYDNTYDETTW-----EYVAQFNFTSHITGSQASIFI------YLDTQLVDELT 190

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
              +             +  QL V +D  +   +  L  V+ L+ G ++P    E     
Sbjct: 191 SRLTPPAPAAQAGNSLNQIRQLPVRLDCVVASLQMPLSQVLALRPGDILPMRLLE--RCD 248

Query: 277 LSANGKEIYSCEL 289
           +  N ++++   +
Sbjct: 249 VQINQQKLFRGAI 261


>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
 gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
          Length = 352

 Score = 52.7 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 100/317 (31%), Gaps = 47/317 (14%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +G +            +DL V I+       KF  I++      V +          + 
Sbjct: 36  EVGNISMSQAATTLSSILDLRVSITTPRVSKIKFGEILNDLVAPKVATTVEFKEGLLGSN 95

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +       I + + ++G + E      N   + +E       + Q+    S  +   IS
Sbjct: 96  LMLLEVKDAIVIADLMMGGTGE----PTNTQFTELELSAVAEAMNQMIGTASTSMATMIS 151

Query: 152 TTQESSPNL----EDFYDIDYLKKNTNR---------LSNEFVTTINMNMTIENVASSFV 198
              +  P +    E   +I+Y                     + +  M +  + V +   
Sbjct: 152 RKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDPVVNDIA 211

Query: 199 LII--------------PQETL-LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234
             +              PQ T  +        + +K    S+      A           
Sbjct: 212 SAMLSDEATVVTRETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLD 271

Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               + +++   +   K T+KD+++   G VI           +  NGK I + E+  + 
Sbjct: 272 LILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVIN 331

Query: 294 KNYTIRITDRINFDQKS 310
           +N+ +RIT+ ++  Q+ 
Sbjct: 332 ENFGVRITNILSQKQRI 348


>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
 gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
 gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
           degensii KC4]
          Length = 360

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 94/315 (29%), Gaps = 35/315 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +          E +   V I+    Q      ++ SF   ++              
Sbjct: 46  EIGNIAMGAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYTEGLEGLS 105

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +         + + ++G   +  P L    +S V + + +  +   +  L      T  
Sbjct: 106 LLVVKVEDASVIADLMMGGEGKRSPTLGEIEISAVAEAMNQM-MGAAATSLADIYHRTVG 164

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLII------------ 201
            +P     +  +      +    + +  I+  MTIE++       ++             
Sbjct: 165 IAPPQVRIFSKEGEAATNDLGVEDPIAVISFRMTIEDLLDTEIMRVLSVSTAKEEASLLW 224

Query: 202 ------------PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID------ 243
                       P          + ++   +   S     P      +L + +D      
Sbjct: 225 QGVYGEEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRLELILDIPLKVS 284

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
             +   +  +K+++ L  G ++           +  NG  +   E+  V +N+ +RIT  
Sbjct: 285 VVLGRTRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEENFGVRIT-S 343

Query: 304 INFDQKSLKNFLHKR 318
           I   Q+ L+     R
Sbjct: 344 IVTPQERLRYLARPR 358


>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
 gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
          Length = 548

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 254 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 312

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 313 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 369

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 370 EKMDMTPPDVKFVTLKEEMEYLGEAMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 429

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 430 VRRLLYPMVEAEEEIAEEEIEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 489

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 490 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 548


>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 545

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 99/298 (33%), Gaps = 34/298 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL---------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTRI 246
               L         + + + E   E +  P   ++  Q+              +N+    
Sbjct: 428 VRRLLYPMVEEEIVTEEIEEEKVVEPVAQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVF 487

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 GSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545


>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
           8271]
          Length = 373

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 106/329 (32%), Gaps = 59/329 (17%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +  +          + +   V+I+           ++  +     + + +     + + 
Sbjct: 45  EIANISMGTAATTLSQLVGRKVEITTPKVDITTPREVLDEYPVPYVLIAVSYKKGITGSN 104

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +  S +    +++ ++G S ++  +     L+ ++       + Q+       +ST   
Sbjct: 105 MLILSRSDGSIIVDLMMGGSGQSPYE----ELTDLQVSGISEAMNQMMGSAATSMSTMFS 160

Query: 156 SSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVA-SSFVLIIPQETLLK 208
           S+ ++     I   +   +         NE V  I+  M IE V  S+ + +IP      
Sbjct: 161 STVDITPPNVIITKEGEEDAFLQTDIDPNEPVVKISFKMNIEGVLDSTLLQVIPLSVAKN 220

Query: 209 TTLISLSSQNKSENQSEDLIDPFARK---------------------------------- 234
            T   L++Q + ++  E   +                                       
Sbjct: 221 MTERLLNNQPEPQSGPEARQEREYHSEPPLSPPPDIFWQQQSSMSSQSTPVQPAQFSQLV 280

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                         + + + +   +     T+KD++ L  G V+           +  NG
Sbjct: 281 TGNHPAIPNNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNG 340

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310
           K I  CE+  + + + IRIT+ IN  Q+ 
Sbjct: 341 KLIAKCEVVVINETFGIRITEIINQAQRM 369


>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
 gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
 gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
 gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
 gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|145297435|ref|YP_001140276.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850207|gb|ABO88528.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 236

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 23/216 (10%)

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS--LSTVEKKLAKRTIAQISA 144
           SL       +   S +++  L     G S     +  + S  L+  E++L  R       
Sbjct: 36  SLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGETASHSKGLTDTEQRLVLRLCQYQVD 95

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
           + + C+    +    L        + ++   +S  ++    + +   +      L+ P E
Sbjct: 96  IWSSCL-GLGDLEWQL------TLITRDVLPVSRLWMAAATLTVGSFSHGWQLWLVPPAE 148

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           +       +L                  +    +   +   +     TL D+  LK+G V
Sbjct: 149 STGPAAGHALQDGT------------LEQALTHIPTRLRVVMGQLSMTLADLECLKVGDV 196

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +     E          +  +S  +     +   ++
Sbjct: 197 LSLDLPE--LVPALIGNRPCFSGRIAEHKGSLVYQV 230


>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
 gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
          Length = 395

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 113/339 (33%), Gaps = 59/339 (17%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
           ++ TI +I +         L  +  +K+++   +  ++ +S     +      N +    
Sbjct: 57  EQDTIGEIGNISFGSSATALSALLNQKVEITTPV-VSAVKSDMLRQLFPR--PNVIVHVK 113

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAV 145
               +  +     + +    + + +LG + E   P+L    LS V++ + +  +   S  
Sbjct: 114 YTEGFEGSNLFVITTDDAAIIADLMLGGNGENPDPELSEMHLSAVQEAMNQM-MGSASTS 172

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLI-IP 202
           ++   +   + SP   +  + D   +       E +  I+ ++ + ++  +    LI +P
Sbjct: 173 MSTLFNRRVDISPPKVEVIEFDEQSRTEYVSDGEDLIAISFSLRVGDLIDSKLMQLISVP 232

Query: 203 QE-----TLL---------------KTTLISLSSQNKSENQSEDLIDPFARKTYQLN--- 239
                   LL                               +E +     ++        
Sbjct: 233 FSKDYANALLGGGATAEPPVQEAEPLPEPAPAIGGLGDGTSAERVNQHIGQRVKDAEQVV 292

Query: 240 --------------------------VNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271
                                     + ++ ++ L +T  T+++++++  G +I      
Sbjct: 293 EKAVFSNFETTKPDEAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLA 352

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N K I   E+  + +N+ +RITD ++   + 
Sbjct: 353 GEPVDVLINDKLIAKGEVVVIDENFGVRITDIVSKKDRL 391


>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
 gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
          Length = 546

 Score = 52.7 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
 gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
          Length = 546

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
 gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
           4222]
          Length = 544

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 101/298 (33%), Gaps = 34/298 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPIYEAKEM 426

Query: 210 TLISL---------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTRI 246
               L         + + + E   E ++ P   ++  Q+              +N+    
Sbjct: 427 VRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVF 486

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 GSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 544


>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
 gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
          Length = 548

 Score = 52.3 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 98/300 (32%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 253 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-EGVPVPFVILNVDFVEGLKNEN 311

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     ++ + +  I  N+ I ++  S    I+P     + 
Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGESMAVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 428

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244
               L               + E     ++ P   K  +              + +N+  
Sbjct: 429 VRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQPIEYKEVKQVEPVYMDASILQNVEMNVKF 488

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548


>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
 gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
           KBAB4]
 gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
          Length = 548

 Score = 52.3 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 98/300 (32%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 253 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-EGVPVPFVILNVDFVEGLKNEN 311

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET---- 205
              + +P    F  + + ++     ++ + +  I  N+ I ++  S    I+P       
Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGESMAVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 428

Query: 206 ---LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV------------------NIDT 244
              LL   +       +   + E++  P  +      V                  N+  
Sbjct: 429 VRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKF 488

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548


>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
          Length = 366

 Score = 52.3 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 56/313 (17%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLL 112
           +   VDIS    +      +        V               +     L   L + ++
Sbjct: 52  LGRKVDISTPEVEVMTLRELRKGISGEKVCVTIHFEGEVEGLNALVLEKQLAAELADIMM 111

Query: 113 GASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
           G        +L    LS V + + +  +   +  L+  I      +P   +  + D    
Sbjct: 112 GGLGKPESDELDEFKLSAVGEAMNQM-MGSAATSLSDMIKKPVSITPPTTEILNFDDESV 170

Query: 172 NTNRLSNE--FVTTINMNMTIENVA-SSFVLIIP-------------------------- 202
               + +E   V      MTIE +  + F L +P                          
Sbjct: 171 KFPPIGDENDKVAKATFTMTIEGLQPAKFFLAMPISFVKKLYELIFGTPTVEQKQASAPA 230

Query: 203 ------------------------QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                                   Q    +        + +  ++   ++D   +  + +
Sbjct: 231 PGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFEDFGRTQQPSEKPQILDERLQLLFDV 290

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+   +   K  LK+++ L +G +I           +  N K I   E+  + +N+ +
Sbjct: 291 PLNVTVELGRTKLALKEIMELGVGSLIELDKLTGEPVDIYVNNKLIARGEVVVIDENFGV 350

Query: 299 RITDRINFDQKSL 311
           RIT+ +N  ++  
Sbjct: 351 RITEIVNPKERLY 363


>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 544

 Score = 52.3 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 101/298 (33%), Gaps = 34/298 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPIYEAKEM 426

Query: 210 TLISL---------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTRI 246
               L         + + + E   E ++ P   ++  Q+              +N+    
Sbjct: 427 VRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVF 486

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 487 GSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 544


>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
 gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
          Length = 546

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245
               L          + +   E   E ++ P   K  +              + +N+   
Sbjct: 428 VRRLLYPMVEAEEEITEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 318

 Score = 52.3 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 24  EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 82

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 83  VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 139

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 140 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 199

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 200 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 259

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 260 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 318


>gi|119384526|ref|YP_915582.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
 gi|119374293|gb|ABL69886.1| surface presentation of antigens (SPOA) protein [Paracoccus
           denitrificans PD1222]
          Length = 392

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 76/261 (29%), Gaps = 17/261 (6%)

Query: 55  DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
            L V +          + +     E  + +        +   +    +L+  L+E     
Sbjct: 74  GLPVFVEKVERAGMVLAELPELLPERALLAVVGGRR-DALGVVAICPDLLAALIEMQAIG 132

Query: 115 SHETIPQLYNRSL---STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
              + P    R     + +        +A++     +C +           +       +
Sbjct: 133 RVTSRPAPPRRPTRTDAAISADFVNALLAELG---RECAARDGCPDFGAYRYATFMDDPR 189

Query: 172 NTNRL-SNEFVTTINMNMTIENVA---SSFVLIIPQETLLKTTLISLSSQNKSE-----N 222
             + L  +  +T ++    I          ++ +P         +   + N+S      +
Sbjct: 190 PLSLLLEDGEMTRLDFRFRIGTGGQRDGRLMIALPARVGAPPDAVPAIAGNQSRLPVAPS 249

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NG 281
               +    A    +  + +   +  ++ +L  +  L  G ++P        A L    G
Sbjct: 250 ADPPVAPSLAEAVQEAPIRLAGILCRRRLSLHQLRGLATGSLLPLPQNVLDEARLETPQG 309

Query: 282 KEIYSCELGRVGKNYTIRITD 302
           + +    LG     + IR+ D
Sbjct: 310 QLLARGRLGEKDGFHAIRLRD 330


>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
 gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
          Length = 546

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + L+ +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VKRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
 gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
          Length = 379

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 118/366 (32%), Gaps = 70/366 (19%)

Query: 5   SIHKNTSPLHPILLARLTGKLGDKKTIEKISS-SLGYLYKKFLPKIFKEKMDLDVDISYT 63
           S  +  +P  P L         D   +E+ +   +G +            ++  VDI+  
Sbjct: 20  STSEEPAPAKPEL---------DLSEMERDAIGEIGNISFGSSATALSTLLNQKVDITTP 70

Query: 64  SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET-IPQ 121
           S      S I   F              +S +  +    +    + + ++G   +   P 
Sbjct: 71  SVTVISKSKISDEFPHPYVAIEVNYTEGFSGSNLLVVEQSDAAIIADLMIGGDGKGADPS 130

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
           L    LS V++ + +  +   +  ++   S   + SP   +  D++  K      ++E +
Sbjct: 131 LGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKIDISPPRVELLDVNEEKGTDRIPADEML 189

Query: 182 TTINMNMTIENV--ASSFVL--------------------------------------II 201
             ++  + +  +  ++   L                                      ++
Sbjct: 190 VKVSFRLKVGELIDSNIMQLYPITFAKDLISDLMNTGSSNEDIQQEEPEETYEAPEEAVM 249

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDP---------------FARKTYQLNVNIDTRI 246
           P+  L      +   Q K +  +   + P                      +++ +   +
Sbjct: 250 PEPRLESQPQPTPKRQGKPKKAAPVQVAPVEFSAFDPNEAPQAHLNNLDMLMDIPLSITV 309

Query: 247 NLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            L +T  ++K+++ L  G +I           +  N + +   E+  + +N+ +R+TD +
Sbjct: 310 ELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDIL 369

Query: 305 NFDQKS 310
           +  ++ 
Sbjct: 370 SQAERI 375


>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
           ATCC 12755]
          Length = 352

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 47/317 (14%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +G +            +D  V I+       KF  I++      V +          + 
Sbjct: 36  EVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTVEFKEGLLGSN 95

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +       I + + ++G + ET         + +E       + Q+    S  +   IS
Sbjct: 96  LMLLEVKDAIVIADLMMGGTGETSNT----QFTELELSAVAEAMNQMIGTASTSMATMIS 151

Query: 152 TTQESSPNL----EDFYDIDYLKKNTNR---------LSNEFVTTINMNMTIENVASSFV 198
              +  P +    E   +I+Y                     + +  M +  + V +   
Sbjct: 152 RKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIKSKIMQIFTDPVVNDIA 211

Query: 199 LII--------------PQETL-LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234
             +              PQ T  +       ++ +K    S+      A           
Sbjct: 212 SAMLSDEATVVTRETPTPQPTAPVAAPTPEPAATSKPVEVSKPAFQTLASSGVSDGDNLD 271

Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               + +++   +   K T+KD+++   G VI           +  NGK I + E+  + 
Sbjct: 272 LILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVIN 331

Query: 294 KNYTIRITDRINFDQKS 310
           +N+ +RIT+ ++  Q+ 
Sbjct: 332 ENFGVRITNILSQKQRI 348


>gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
           Ex25]
 gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
 gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
           Ex25]
 gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
          Length = 322

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V ++
Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEH 306

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 307 LGVRVLELFGGTQE 320


>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
           [Bacillus anthracis str. A2012]
 gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
 gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
           Ames]
 gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
           Sterne]
 gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
 gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
 gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
           CDC 684]
 gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
           A0248]
          Length = 546

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
 gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
          Length = 370

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 108/332 (32%), Gaps = 62/332 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +          + ++  V+I+    +      I   F+  N +     +S  +   
Sbjct: 39  EIGNISMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSGITGRN 98

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +         +   ++G   +         LS +E    +  + Q+       ++T   
Sbjct: 99  ILIMQTTDAAVIANLMMGGDGQVNTS----ELSEIEVSAVQEAMNQMIGSAATSMATMFA 154

Query: 156 SSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
              N+       +   N N       +E +  +  ++TIE +  S+ + I+P  T  K  
Sbjct: 155 REVNISPPKSKIWKDMNENISETIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKIV 214

Query: 211 LISLSSQNKSENQSEDLID--------------PFARKTYQ------------------- 237
            I +    +  N+ +D  D              P      +                   
Sbjct: 215 SIMMGEDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATFE 274

Query: 238 -----------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILS 278
                            L+V ++  + L +T  ++KD++ L  G +I      +    + 
Sbjct: 275 PLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEVL 334

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            NGK+I   E+  V +N+ +RIT  ++   + 
Sbjct: 335 INGKKIAYGEVVVVDENFGVRITSIVSGADRI 366


>gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus]
          Length = 322

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V ++
Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEH 306

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 307 LGVRVLELFGGTQE 320


>gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01]
 gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01]
          Length = 322

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V ++
Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEH 306

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 307 LGVRVLELFGGTQE 320


>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 546

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
          Length = 287

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 83/253 (32%), Gaps = 20/253 (7%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I       + S       S          LV  L + +LG    +  ++ +  L    K
Sbjct: 42  LISVPYARVMISAIEKEESSIELLAPVD--LVTALSDLMLGGEGASKEEMDDDDLDAF-K 98

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIE 191
           ++A      I+  L       QE  P L        + K   +  +     + +  M   
Sbjct: 99  EMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKMEAL 153

Query: 192 NVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLNVN 241
             +   +L     +    KT         KS  +     D                + +N
Sbjct: 154 KESQIILLTTAAFERQFEKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLN 213

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+IT
Sbjct: 214 VKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT 273

Query: 302 DRINFDQKSLKNF 314
           D I   ++ L+  
Sbjct: 274 D-IGTKKERLEQL 285


>gi|163736146|ref|ZP_02143565.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
 gi|161390016|gb|EDQ14366.1| surface presentation of antigens (SPOA) protein [Phaeobacter
           gallaeciensis BS107]
          Length = 460

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 37/293 (12%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKEN 80
           G L    T++ +  S+                  D+ ++  + +        +     + 
Sbjct: 29  GGLTSSLTLKALRRSIARAAADL----------CDLPVAVLAARQANRIPEDLPPHLSDK 78

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK---- 136
            +       +             V  L++               R+ +  +  +      
Sbjct: 79  HLLVVLDGPN-GRIGAATLDAPTVTALIQQQTMGQ-VLGKAPSERNYTPTDAAMVADFLE 136

Query: 137 ----RTIAQISAVLNQCISTTQESSPNLEDFYDID-YLKKNTNRLSNEFVTTINMNMTIE 191
               + ++ ++   ++ I +       +ED   +   L+    R     V  + +++   
Sbjct: 137 RTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYR-----VIELTLDLACG 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +     LI+P     + +   L    ++ +Q+             +   +   +   K 
Sbjct: 192 AMQGGLTLILP-----EPSPEDLGEAGQNAHQAGP---SLGSNMGSMRAELRAVLCRMKV 243

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIRITDR 303
              +   L+ G ++P          + S +G+ I    LG++     +R+TD 
Sbjct: 244 PANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTDP 296


>gi|163741324|ref|ZP_02148716.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10]
 gi|161385677|gb|EDQ10054.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10]
          Length = 460

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 37/293 (12%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKEN 80
           G L    T++ +  S+                  D+ ++  + +        +     + 
Sbjct: 29  GGLTSSLTLKALRRSIARAAADL----------CDLPVAVLAARQANRIPEDLPPHLSDK 78

Query: 81  FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK---- 136
            +       +             V  L++               R+ +  +  +      
Sbjct: 79  HLLVVLDGPN-GRIGAATLDAPTVTALIQQQTMGQ-VLGKAPSERNYTPTDAAMVADFLE 136

Query: 137 ----RTIAQISAVLNQCISTTQESSPNLEDFYDID-YLKKNTNRLSNEFVTTINMNMTIE 191
               + ++ ++   ++ I +       +ED   +   L+    R     V  + +++   
Sbjct: 137 RTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYR-----VIELTLDLACG 191

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
            +     LI+P     + +   L    ++ +Q+             +   +   +   K 
Sbjct: 192 AMQGGLTLILP-----EPSPEDLGEAGQNAHQAGP---SLGSNMGSMRAELRAVLCRMKV 243

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIRITDR 303
              +   L+ G ++P          + S +G+ I    LG++     +R+TD 
Sbjct: 244 PANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTDP 296


>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
           Eklund 17B]
          Length = 385

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 106/338 (31%), Gaps = 67/338 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +          + ++ +V+I+           +  SF+  N +             
Sbjct: 47  EIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIILDVEYTEGIIGRN 106

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G   +         LS +E    +  + Q+    +  +    S
Sbjct: 107 ILVMRTDDAAVIANLMMGGDGKVPENPE---LSEIEVSAVQEAMNQMIGSAATSMATMFS 163

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET----- 205
              + SP     +             +E +  ++  + I ++  S+ + I+P  T     
Sbjct: 164 RRVDISPPTSKLWKEKDEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKKIV 223

Query: 206 -------------LLKTTLISLSSQNKSENQSEDLIDPFARKTY---------------- 236
                        +    ++    + ++ NQ  ++ +                       
Sbjct: 224 SIMMGEEDASTEAIESAKVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPIEV 283

Query: 237 ----------------------QLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREK 272
                                  L+V +D  + L +T  ++KD++ L  G +I      +
Sbjct: 284 HEAAFETLVPGDTSQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAE 343

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
               +  NGK+I   E+  V +N+ +RIT  ++  ++ 
Sbjct: 344 EPVEILVNGKKIAYGEVVVVDENFGVRITSIVSNAERI 381


>gi|34498456|ref|NP_902671.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472]
 gi|34104311|gb|AAQ60670.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472]
          Length = 280

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 34/201 (16%)

Query: 99  CSNNLVITLLENLLGA-----SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
               L++ +L+   GA       E   +      +  E++L +    ++   L + I   
Sbjct: 88  FDRGLLLGILDYRFGARAGASDGELPAE------TETERRLGRTLAERLLPRLARAIHQL 141

Query: 154 QESS-PNLEDFYDIDYLKKNT----NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
             +S P+      + Y  +        LS+       + + +   A              
Sbjct: 142 SRASLPDASRPQPLGYPDQAAWQLEVDLSDGDAKLGTLRLRLNAAAFD------------ 189

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             L+   S  +           FA +     + +D R+  ++  L  V+ L+ G V+P  
Sbjct: 190 -ALLQNLSGQRPRLLGNPDSANFAERVR---IRLDARLLEQELPLGAVLDLRPGSVLPVA 245

Query: 269 HREKTCAILSANGKEIYSCEL 289
            +    A + A G  ++  ++
Sbjct: 246 MQPH--AEVCAQGSPLFRAQV 264


>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
          Length = 287

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 22/258 (8%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I       V S       S          LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISVPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
            K++A      I+  L       QE  P L        + K   +  + +   I  +  +
Sbjct: 98  -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKED-YAKMIVFSFKM 150

Query: 191 ENVASSFVLIIPQETLL----KTTLISLSSQNKSENQSEDLIDPFARKTY--------QL 238
           E +  S ++++          KT       + KS  +     D                +
Sbjct: 151 EALKESQIILLTTAAFEHQFEKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDV 210

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I
Sbjct: 211 KLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGI 270

Query: 299 RITDRINFDQKSLKNFLH 316
           +ITD I   ++ L+   H
Sbjct: 271 QITD-IGTKKERLEQLKH 287


>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
 gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 285

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 20/225 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P L 
Sbjct: 67  DLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 120

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP-----QETLLKTTLISLS 215
                  + K+  +  + +   +  +  +E +  S  VL+I      Q           +
Sbjct: 121 FTTTNAEIAKDLPKKED-YAKAVVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEET 179

Query: 216 SQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           +++ +E            +         + +N+  RI  KK  LKDVV++ IG V+    
Sbjct: 180 TKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                  +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 283


>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
           australiensis 50-1 BON]
 gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
           australiensis 50-1 BON]
          Length = 366

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 95/322 (29%), Gaps = 53/322 (16%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +            +   V I+         + +   +   FV  +           
Sbjct: 39  EIGNISMGTAATTLSTLLRNKVVITTPRVDITTMNELGKEYPIPFVAVEVKYTQGLEGVN 98

Query: 96  FIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +      V  + + ++G     I  ++ +  LS + + + +      +  L+       
Sbjct: 99  LLILKEEDVKLITDLMMGGDGSNIADEISDLHLSAIGEAMNQMV-GSSATSLSTMFDKNI 157

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLIS 213
             SP      +           SNE +  I  +M I  +  S  + ++P +   +     
Sbjct: 158 NISPPKAFVINFTDESPYDAFDSNEPLVRIAFSMEIGTLLKSEMMQLLPIDFAKELVNNL 217

Query: 214 LSSQNKSEN---------QSEDLIDPFARKTYQ--------------------------- 237
           L    K+ +              I+    +  Q                           
Sbjct: 218 LGGAAKAPDNEPLQKQEVTQMPPIESEKPEIKQAVVNKTESEKVVKAQPVVFQQLNNEAP 277

Query: 238 -----------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                      +++ +   + L +T  T+KD++ L  G VI           +  NGK +
Sbjct: 278 EVLQGSNMNLIMDIPLQVTVELGRTKKTVKDILELGTGSVIELDRLAGEPIDILVNGKLV 337

Query: 285 YSCELGRVGKNYTIRITDRINF 306
              E+  + +N+ +RI + I+ 
Sbjct: 338 ARGEVIVIDENFGVRIIEMIDQ 359


>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
 gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
          Length = 547

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMKVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244
               L           + + + E   E ++ P   ++  Q+              +N+  
Sbjct: 428 VRRLLYPMMEEEEEIITEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
           98-5491]
 gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
 gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
          Length = 285

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 97/252 (38%), Gaps = 15/252 (5%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + +           +  +      S  +   L + +LG    T   + +  L    K++
Sbjct: 38  SALQAPMARVDIEADN-GAKLAFFISPKVATALADMMLGGEGSTKETMDDDDLDAT-KEI 95

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV 193
                  +S  L        + S +L+D + I +     T+R +N +  + N+    +++
Sbjct: 96  VSNIFGAVSTSL-GAQKELPKLSFSLKDIHFISETADLETDRFTNFYTFSFNLGTIQDSL 154

Query: 194 ----ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNID 243
               +  F  +     QET  +T   S+ + N  +N + +L +   +       + + + 
Sbjct: 155 FLAFSEEFENLFKENSQETNQETPQPSIQNTNHQDNAALELNNAEMKNMAMLLDVRLQVK 214

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            RI  KK  LKDV+ + IG V+           +  + K I   E+  V  N+ I+IT+ 
Sbjct: 215 VRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVDGNFGIQITE- 273

Query: 304 INFDQKSLKNFL 315
           I   +  ++  +
Sbjct: 274 IAPKKDRIEQLM 285


>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 276

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 8/243 (3%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL-ENLLGASHETIPQLYNRSLSTVEKK 133
           +  +   V +  ++S   +   I  +  L+IT + + +LG          N ++   E  
Sbjct: 38  NGIQTPIVVANINVSGDINGKIIFIATPLLITAINDLMLG----EEEPTKNLNIGDDELD 93

Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
            +K   + I + ++  ++  ++      +   + YL +N     + +       +T+ ++
Sbjct: 94  ASKEIFSNILSAISTSLTAAKDMPKLSFEIQKVVYLDENQILDLSSYEKLFLCPVTMGDI 153

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKT 251
                L+I                 +  +   D+ +          + + I  RI  KK 
Sbjct: 154 NEHIGLVIDFAFNKYFNKSDEKHTKEIPHLKADITEEIKNIGLIMDVRLPIRVRIGSKKM 213

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
            LKDV+++ IG VI           +    K++   E+  V  N+ ++IT+ I   ++ L
Sbjct: 214 LLKDVLSMDIGSVIELNQLANDPLEVLIGDKQVALGEVVIVDGNFGVQITE-IGTKKERL 272

Query: 312 KNF 314
           +  
Sbjct: 273 EQL 275


>gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 125

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 2/124 (1%)

Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
           NE    + + + I +      +  P  ++        S        +         +   
Sbjct: 2   NEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALL 61

Query: 238 LNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             V++D  + L   + +LK+++ L +G  I           +  + K+ Y   +G  G  
Sbjct: 62  SGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYR 121

Query: 296 YTIR 299
            TI+
Sbjct: 122 KTIQ 125


>gi|74101638|gb|AAZ99728.1| FliML [Aeromonas hydrophila]
          Length = 291

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 63/213 (29%), Gaps = 23/213 (10%)

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQL--YNRSLSTVEKKLAKRTIAQISAVLN 147
                 +   S +++  L     G S     +   +++ L+  E++L  R       + +
Sbjct: 94  DTQRVVYFSISPSVIYRLAVLFFGGSLRNQEETVSHSKGLTDTEQRLVLRLCQYQVDIWS 153

Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
            C+    +    L           +   +S  ++    + +   +      L+ P     
Sbjct: 154 SCL-GLGDLEWQLTLITC------DALPVSRLWMAAATLTVGSFSHGWQLWLVPP----- 201

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                          Q   L    A    +L V     +     TL D+  LK+G V+  
Sbjct: 202 ---AERTGPAVGHTLQDGALEQALAHIPARLRV----VMGQLSMTLADLECLKVGDVLSL 254

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              E   A+     +  +S  +     +   ++
Sbjct: 255 DLPEVVPAL--IGNRPCFSGRIAEHKGSLVYQV 285


>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 547

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMKVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244
               L           + + + E   E ++ P   ++  Q+              +N+  
Sbjct: 428 VRRLLYPMMEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
           NVH0597-99]
 gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 546

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPITEAKEM 427

Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245
               L          + + + E   E ++ P   ++  Q+              +N+   
Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                 T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546


>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
 gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
           [Campylobacter curvus 525.92]
          Length = 286

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 21/265 (7%)

Query: 66  QSGKFSHI----IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIP 120
           + G+ +       +  K   V +   LS   ++   I C+  LV  + E ++G       
Sbjct: 26  EVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVCTPVLVSAISEWMMG----EEE 81

Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
              N +L   E   AK   + + +  +  +   +       +  ++++L +N+    + +
Sbjct: 82  ISRNEALGADELDAAKEIFSNLLSAFSTSLGAQKGMPKISFEIVNVNFLDENSALDFSVY 141

Query: 181 VTTINMNMTIENVASSFVLIIPQETLL-----KTTLISLSSQNKSENQSEDLIDPFARK- 234
                 ++ IE++      +     +      K       S ++++       +  A + 
Sbjct: 142 EKLFLFSVKIEDINEHIGFVCDHTLMKFFEPTKVGESESQSGDQAKATHGSRSEFSAEEM 201

Query: 235 -----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                   + + I  RI  K+  LKDV+++ IG VI           +    K I   E+
Sbjct: 202 RNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEV 261

Query: 290 GRVGKNYTIRITDRINFDQKSLKNF 314
             +  N+ I+IT +I   ++ L+  
Sbjct: 262 VIIDGNFGIQIT-QIGSKRERLQQL 285


>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
 gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
          Length = 285

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 20/225 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P L 
Sbjct: 67  DLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 120

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP-----QETLLKTTLISLS 215
                  + K   +  + +   +  +  +E +  S  VL+I      Q           +
Sbjct: 121 FTTTNAEIAKELPKKED-YAKAMVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEET 179

Query: 216 SQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           +++ +E            +         + +N+  RI  KK  LKDVV++ IG V+    
Sbjct: 180 TKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                  +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 283


>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
          Length = 287

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 85/255 (33%), Gaps = 20/255 (7%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +     V S       S          LV  L + +LG    +  ++ N  L    K
Sbjct: 42  LISTPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF-K 98

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIE 191
           ++A      I+  L       QE  P          + K   +  +     + +  M   
Sbjct: 99  EMASNIFGAIATSLKS-----QELLPKFNFTTINAEIAKELPKKEDYAKMIVFSFKMEAL 153

Query: 192 NVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLNVN 241
             +   +L     +    KT       + KS  +     D                + +N
Sbjct: 154 KESQIILLTTAAFERQFEKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLN 213

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+IT
Sbjct: 214 VKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT 273

Query: 302 DRINFDQKSLKNFLH 316
           D I   ++ L+   H
Sbjct: 274 D-IGTKKERLEQLKH 287


>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
 gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
 gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
          Length = 287

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 23/287 (8%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   +S     F  +I +       S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISTPYARVKISAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL----LKTTLISLS 215
           L        + K   +  + +   +  +  +E +  S ++++  E       KT      
Sbjct: 121 LNFTTTNAEIAKELPKKED-YAKAMVFSFKMEAIKESQIILLTTEAFEDQFKKTHQEEKE 179

Query: 216 SQNKSENQSEDLIDPFARKTY--------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              KS  +     D                + +N+  RI  KK  LKDVV++ IG V+  
Sbjct: 180 EATKSTIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVEL 239

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                    +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 240 DQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285


>gi|167568051|ref|ZP_02360967.1| translocation protein in type III secretion [Burkholderia
           oklahomensis EO147]
          Length = 349

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           ++L + +  +        P        +V +  ++      L  + +L+ G V+    + 
Sbjct: 258 VALDTPDAPDAPDSPDAGPLR---LDAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQP 314

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
                L   GK      L  VG    +RI   +  
Sbjct: 315 DGLVTLQVAGKPFARGTLLDVGGRLAVRIEHLLPA 349


>gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B]
 gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B]
          Length = 322

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   I  +  TL+ +  L+ G V            L ANGK I  CEL  V ++
Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTLRANGKIIGECELVNVNEH 306

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 307 LGVRVVELFGGTQE 320


>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
 gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
          Length = 547

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPITEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244
               L           + + + E   E ++ P   ++  Q+              +N+  
Sbjct: 428 VRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
 gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
          Length = 283

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 107/282 (37%), Gaps = 12/282 (4%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
               L+ + +       M     +++T   +     ++ +     V + +  +S  S   
Sbjct: 8   DFIELFIQEMVATIDGMMGRTAVVTHTG-DTEVSDSLLGTPFGKVVVNVSLGASQVSTLC 66

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
                NL   L + ++G   +T   + +      +K   K     I+  L   +   ++ 
Sbjct: 67  FIMPENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGGHEKL 122

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-TTLISLS 215
                   D+  ++     LS+ F T    ++ I++V S  +++   + L      +   
Sbjct: 123 PHFSFAIADVSNVESE-GSLSD-FDTASRFDVGIDSVKSELIMLTKNDLLTHVPKDLKAP 180

Query: 216 SQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +   S N+   L D   R       + +++  RI  K+  LKDV+++ IG V+       
Sbjct: 181 ASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLAS 240

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
               +  N K I   E+  V  N+ I+IT+ I   ++ L++ 
Sbjct: 241 DPLEILVNDKIIGKGEVVVVDGNFAIQITE-IGTKKERLESL 281


>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
 gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
          Length = 287

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
           +LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P L 
Sbjct: 69  DLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 122

Query: 162 DFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIP----QETLLKTTLISLSS 216
                  + K   +  +       +  M     +   +L       Q           ++
Sbjct: 123 FTTTNAEIAKEIPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKNHKEEKEEAT 182

Query: 217 QNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           ++ +E            +         + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 183 KSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                 +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285


>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
 gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
 gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
 gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
          Length = 547

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E       + LS +E      +  + +   +  +++   
Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+P     + 
Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPITEAKEM 427

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244
               L           + + + E   E ++ P   ++  Q+              +N+  
Sbjct: 428 VRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547


>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
 gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
          Length = 287

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 21/288 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   ++ +   F  +I +       S               
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESFLKLISAPYARVKISAIEKEESLIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214
           L        + K   +  +       +  M     +   +L       Q           
Sbjct: 121 LNFTTTNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKTHKEEKEE 180

Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           ++Q+ +E            +         + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 TTQSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                   +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|163800130|ref|ZP_02194031.1| putative flagellar motor switch protein [Vibrio sp. AND4]
 gi|159175573|gb|EDP60367.1| putative flagellar motor switch protein [Vibrio sp. AND4]
          Length = 272

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
           D  +               +++  E +  S  L +   T+++T +  L+  N+      +
Sbjct: 139 DMWQTCEYEAPRGIGLHTEISIAFEGLQGSIHLKL-DSTMIQTLIEQLALHNE-----TN 192

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
           L  PF R      V ++  ++ K   L DVV L+   ++P          +S   + ++S
Sbjct: 193 LYQPFCRSLESTPVRLNVVLSKKTMALSDVVELQPDDILPIEL--LNTVPVSIGNQTLFS 250

Query: 287 CELGRVGKNYTIRITDRINFDQKSLK 312
             +        +      N D++S +
Sbjct: 251 GRVAEQDGQLVL----IFNPDKESQR 272


>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
 gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           mendocina ymp]
          Length = 321

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
            S            L+   LE   G +   +P      +ST E+++  R    +S +  +
Sbjct: 120 RSTLGKVGFAIDRALLTEALECYYGGTC--LPNHEAPPVSTSEQRMRTRLGLDVSQLFAR 177

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
            I      +    + YD  Y +        E+V   +    I    +S  +       L 
Sbjct: 178 SI--LAGQTFGKLEPYDNAYEEATW-----EYVAEFHFTSHITGSQASIFI------YLD 224

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           T L+   +   +             +  QL V +D  +   +  L  V+ L+ G ++P  
Sbjct: 225 TQLVDELTNRLTPPAPVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMR 284

Query: 269 HREKTCAILSANGKEIYSCEL 289
             E     +  N ++++   +
Sbjct: 285 LLE--RCDVQINQQKLFRGAI 303


>gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 321

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +  +  TL+ + +L+ G          +   + ANGK I  CEL  + + 
Sbjct: 246 QQLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMRANGKIIGECELVNINER 305

Query: 296 YTIRITDRINFDQK 309
             +R+ + +   Q+
Sbjct: 306 LGVRVIELLGETQE 319


>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
 gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
 gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
 gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
          Length = 352

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 47/317 (14%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +G +            +D  V I+       KF  I++      V +          + 
Sbjct: 36  EVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTVEFKEGLLGSN 95

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +       I + + ++G + ET         + +E       + Q+    S  +   IS
Sbjct: 96  LMLLEVKDAIVIADLMMGGTGETSNT----QFTELELSAVAEAMNQMIGTASTSMATMIS 151

Query: 152 TTQESSPNL----EDFYDIDYLKKNTNR---------LSNEFVTTINMNMTIENVASSFV 198
              +  P +    E   +I+Y                     + +  M +  + V +   
Sbjct: 152 RKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDPVVNDIA 211

Query: 199 LII--------------PQETLLKTTLISLSSQ-NKSENQSEDLIDPFARK--------- 234
             +              PQ T          +  +K    S+      A           
Sbjct: 212 SAMLSDEATVVTRETPTPQPTAPVAAPTPEPAAASKPVEVSKPAFQTLASSGVSDGDNLD 271

Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               + +++   +   K T+KD+++   G VI           +  NGK I + E+  + 
Sbjct: 272 LILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVIN 331

Query: 294 KNYTIRITDRINFDQKS 310
           +N+ +RIT+ ++  Q+ 
Sbjct: 332 ENFGVRITNILSQKQRI 348


>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
 gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
          Length = 548

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 98/300 (32%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H        FV           +  
Sbjct: 253 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-EGVPVPFVILNVDFVEGLKNEN 311

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET---- 205
              + +P    F  + + ++     ++ + +  I  N+ I ++  S    I+P       
Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGESMAVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 428

Query: 206 ---LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV------------------NIDT 244
              LL   +       +   + E++  P  +      V                  N+  
Sbjct: 429 VRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKF 488

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKMTKSL 548


>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
           16994]
 gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
           16994]
          Length = 288

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
           S    ++        +        I+    +      I +          +   + +   
Sbjct: 2   SDFPGVFATEAVATIEGLTGQTPTITLKEAEEISI--ISNVIPPIAQIHVSFSGAAAGRG 59

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +     L   L + +LG   E        ++S  +   AK  ++ I   ++  +++ +E
Sbjct: 60  IVMMPPQLATALGDMMLGGDGEAQD-----TMSDEDMDAAKEIVSNIVGAMSTTLASQKE 114

Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT------ 209
                      +++ ++     + +         + ++ S  +L I   T+ +       
Sbjct: 115 LPKFTIKPERAEFIPESGEVNLDGYAKMFVFTFALGHINSLMMLAI-DSTINEALTGEKA 173

Query: 210 ----------TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
                        + SS   +    E  +         + + +  RI  KK  LKDV+++
Sbjct: 174 APAPASNSSNIFDAPSSSVPAVKLDEGEMKNIGL-IMGVKLPVRVRIGKKKMLLKDVLSM 232

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            IG VI           +  +   I   E+  V  N+ ++IT
Sbjct: 233 DIGSVIELNQLANDPLDILVDDHVIAQGEVVIVDGNFGVQIT 274


>gi|254485678|ref|ZP_05098883.1| Surface presentation of antigens protein [Roseobacter sp. GAI101]
 gi|214042547|gb|EEB83185.1| Surface presentation of antigens protein [Roseobacter sp. GAI101]
          Length = 413

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 78/240 (32%), Gaps = 16/240 (6%)

Query: 78  KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
            EN +              I     LV  L++          P  + R ++  +  LA  
Sbjct: 68  DENLLILMDGPRGLCGAVMI--DPALVGGLIQQQTMGKVLDAPAGFVRPMTGTDAALAAP 125

Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIE 191
            I  +     + + T ++ +  +   Y       N   L          +  + ++M   
Sbjct: 126 LIDALLERAAKLVETDEDRA--VLTGYRFGAKSHNVRLLMLSLDAPEFHIIRMTVDMAQG 183

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLK 249
                 VL +P   +     ++  +   + + + D + P   +    QL   +   +   
Sbjct: 184 ARQGELVLCLP---VPPRHAVAAPTSPDAGSAAADPVAPRTLSASVLQLKAELMVSLAQV 240

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             +++D   L +GQV+P        A +   +G+ +    LG+      +R+  R+    
Sbjct: 241 TMSIRDAGGLHVGQVLPLGSVSFDAAQVRTKDGRILGVGSLGQSDGMRAMRLKHRVKTRD 300


>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 366

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%)

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
             +D+          + V I  R+     T+ +++ L  G VI           +  NGK
Sbjct: 275 ADQDMDGHNFDLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGK 334

Query: 283 EIYSCELGRVGKNYTIRITDRINFDQKS 310
            I   E+  + +N+ +RIT+ +N   + 
Sbjct: 335 LIARGEVVVIDENFGVRITEIVNRSDRI 362


>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
 gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
          Length = 287

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 94/288 (32%), Gaps = 21/288 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   +S     F  +I +     V S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISTPYARVVISAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV +L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  --VLVTSLSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214
           L        + K   +  +       +  M     +   +L       Q           
Sbjct: 121 LNFTTINAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEE 180

Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           +++  +E            +         + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 TTEGVAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                   +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 383

 Score = 50.0 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 105/336 (31%), Gaps = 65/336 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +          + ++ +V+I+           +  SF+  N V             
Sbjct: 47  EIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIVLDVEYTEGIIGRN 106

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G   +         LS +E    +  + Q+    +  +    S
Sbjct: 107 ILVMKTDDAAVIANLMMGGDGQVSENPE---LSEIEVSAVQEAMNQMIGSAATSMATMFS 163

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
              + SP     +             +E +  ++  + I ++  S+ + I+P  T  K  
Sbjct: 164 RRVDISPPTSKLWKEKSEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKKIV 223

Query: 211 LISLSSQNKSE---------------NQSEDLIDPFARKTYQL----------------- 238
            I +  +  S                  +    +   R++ Q                  
Sbjct: 224 SIMMGEEESSSVATDPKKVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEVHE 283

Query: 239 ----------------------NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTC 274
                                 +V +D  + L +T  ++KD++ L  G +I      +  
Sbjct: 284 AAFETLVPGDTAQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEP 343

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NGK+I   E+  V +N+ +RIT  ++  ++ 
Sbjct: 344 VEILVNGKKIAYGEVVVVDENFGVRITSIVSNAERI 379


>gi|254477766|ref|ZP_05091152.1| Surface presentation of antigens protein [Ruegeria sp. R11]
 gi|214032009|gb|EEB72844.1| Surface presentation of antigens protein [Ruegeria sp. R11]
          Length = 448

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 85/291 (29%), Gaps = 34/291 (11%)

Query: 23  GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
           G L    T++ +  S+                DL V +   + Q+ +    + +   +  
Sbjct: 29  GALTSSLTLKALRRSIARAAADL--------CDLPVAV-LAARQANRVPEDLAAHLSDKH 79

Query: 83  FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK----RT 138
                               LV  L++               R  +  +  +      RT
Sbjct: 80  LLVVLDGPAGRIGAATLDAPLVTALIQQQTMGQ-VLGKAPSERHYTPTDAAMVADFLERT 138

Query: 139 IAQISAVL-----NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
             ++ ++L         S  +  +        +  L+    RL +  V     ++    +
Sbjct: 139 FGKVVSMLSGQKDEVIFSGYRFGAQVENVRSLVLGLEAEDYRLIDLTV-----DLACGAM 193

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
             +  LI+P     + T   L   N S++               +   +   +   +   
Sbjct: 194 QGNMTLILP-----EPTAEDLGKANGSQHAGP----SLGSNLGAMRAELQAVLCKMRVPA 244

Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITDR 303
               +L  G ++P           ++ +G+ I    LG++     +R+TD 
Sbjct: 245 NAFTSLAKGDLLPLDQAYLYETEMVAISGQVIAQGRLGQMNGARAVRLTDP 295


>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
           Gambia94/24]
          Length = 285

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 20/226 (8%)

Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160
            +LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P L
Sbjct: 66  ADLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKL 119

Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP------QETLLKTTLISL 214
                   + K   +  + +   +  +  +E +  S ++++       Q           
Sbjct: 120 NFTTTNAEIAKELPKKED-YAKAMVFSFKMEAIKESQIVLLTTEAFEGQFEKTHKEEKEE 178

Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           ++++ +E            +         + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 179 TTKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 238

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                   +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 239 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 283


>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
 gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
          Length = 287

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 21/286 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   ++ +   F  +I         S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESFLKLISVPYARVKISAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214
           L        + K   +  +       +  M     +   +L       Q           
Sbjct: 121 LNFTTTNAEIAKELPKKEDYTKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEE 180

Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
           ++Q+ +E            +         + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 TTQSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                   +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285


>gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 273

 Score = 49.6 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++   +++      I     L+  + E ++G          N  L   E   
Sbjct: 32  DTLKAPLVYAIFDIAN-GGKIGILAGTVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 86

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 87  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 144

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 145 EQISLAMDQTLHNILSGKPAETGNASADSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 204

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 205 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 263

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 264 SKKERLEQL 272


>gi|255262288|ref|ZP_05341630.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255104623|gb|EET47297.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 326

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 65/212 (30%), Gaps = 14/212 (6%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
            +   + C   +V  L+E +    H T      R ++  +  L    + Q+   ++   +
Sbjct: 79  GARAIMTCDGPMVSALIE-MSTIGHVTTANSAARRMTRTDVALITPFLGQVLVEVSGGDA 137

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNE----FVTTINMNMTIENVASSFVLIIPQETLL 207
               +S           L   T  L        V  +++ +   +     +L +P+    
Sbjct: 138 DVPVTSLMSGYDEMTRVLDVCTVELIMPQVQYHVYDLSLELGQGSKTGRVMLCLPKRASQ 197

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +          + +++           L   +D  ++     L +V    +G +I  
Sbjct: 198 DEKIAQ--------DTAKNWKASVEATVLDLPSQLDAVLHTVSMPLSEVRAFAVGDMIKM 249

Query: 268 LHREKTCAILSA-NGKEIYSCELGRVGKNYTI 298
                    +   + + I +  LG+V     +
Sbjct: 250 AASSLKTVQVRGLDSQTITTARLGQVHGTRAL 281


>gi|27904579|ref|NP_777705.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46395831|sp|Q89AZ4|FLIM_BUCBP RecName: Full=Flagellar motor switch protein FliM
 gi|27903976|gb|AAO26810.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 331

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 88/285 (30%), Gaps = 19/285 (6%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            ++   + K   K   E  D+D  IS+      KF +I  + K N +     +S +    
Sbjct: 45  ENMHECFLKQFTKHISEYSDVDCKISFYKFIIQKFKNIKKNIKNNSISDCFEISPYKKLG 104

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYN--RSLSTVEKKLAKRTIAQISAVLNQCISTT 153
            I  S+N+   L+E L G   E         + L+     + K+    I        +  
Sbjct: 105 IIFVSDNISDYLIEYLFGG-CELKNSSNGLFKKLTLSTINIVKKMFKIILEQYYFLWNKV 163

Query: 154 Q--ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              +    L    +++ +       S +   T    + I N      + +P  T L    
Sbjct: 164 SLCKMKLILNRLQNLNEISNVNFINSKDTFVTFLFRLRIANKFGMLGICLP--TSLSFQC 221

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLN----------VNIDTRINLKKTTLKDVVTLKI 261
            + +  N   N S    D       +            + +   +     TL  ++  K+
Sbjct: 222 NNEADVNSVHNVSHISYDNVVNTEIRKRLFQVIVYNCKIVLKIVLIENYITLSKIIAFKV 281

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           G ++P    +    +  +    I   +       Y   + D  N 
Sbjct: 282 GDILPIHMLDN--VVAYSENVPILIGKYKMFKNKYVFCVVDYYNS 324


>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
          Length = 287

 Score = 49.6 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 85/257 (33%), Gaps = 20/257 (7%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I       V S       S          LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISVPYARVVISAIEKEENSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMT 189
            K++A      I+  L       QE  P L        + K   +  +     + +  M 
Sbjct: 98  -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKME 151

Query: 190 IENVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239
               +   +L     +    KT       + KS  +     D                + 
Sbjct: 152 ALKESQIILLTTAAFERQFEKTHQEEKEEKTKSTTEEVKTHDASLENIEIRNISMLLDVK 211

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+
Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271

Query: 300 ITDRINFDQKSLKNFLH 316
           ITD I   ++ L+   H
Sbjct: 272 ITD-IGTKKERLEQLKH 287


>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
          Length = 287

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 84/255 (32%), Gaps = 20/255 (7%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I +     V S       S          LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISAPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVTTINMNMT 189
            K++A      I+  L       QE  P L        + K   +  +   +   +  M 
Sbjct: 98  -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYTKMIAFSFKME 151

Query: 190 IENVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239
               +   +L     +    KT         KS  +     D                + 
Sbjct: 152 ALKESQIILLTTVAFERQFEKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVK 211

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+
Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271

Query: 300 ITDRINFDQKSLKNF 314
           ITD I   ++ L+  
Sbjct: 272 ITD-IGTKKERLEQL 285


>gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
 gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
          Length = 281

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 92/250 (36%), Gaps = 18/250 (7%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V+    +S       I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKPPLVYVNFGVS-SGGRVGILAGAVLMSAIGEWMMG----EEEITKNDKLGADEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +     +   +E           ++++++ +    +FV   N ++ IE++ 
Sbjct: 94  AKEAIQNIISAFTTSLGAQKELPKMEFSLSSCEFIEESIDLK--DFVKLYNYDIKIEDLE 151

Query: 195 SSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARK-------TYQLNVNIDT 244
               L++     +TL K+     ++Q K    S         +          + + +  
Sbjct: 152 EQISLVMDDKFYKTLTKSGDDEATTQQKEGAVSSGEAMMTLGEGLKNINLIMDVRLPVRV 211

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           RI  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I
Sbjct: 212 RIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-I 270

Query: 305 NFDQKSLKNF 314
              ++ L+  
Sbjct: 271 GTKKERLEQL 280


>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
          Length = 287

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 20/255 (7%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I +     V S                  LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISAPYARVVISVIEKEESFIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMT 189
            K++A      I+  L       QE  P L        + K   +  +     + +  M 
Sbjct: 98  -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKKDYAKMIVFSFKME 151

Query: 190 IENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239
               +   +L          KT       + KS  +     D                + 
Sbjct: 152 ALKESQIILLTTVAFEHQFEKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVK 211

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+
Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271

Query: 300 ITDRINFDQKSLKNF 314
           ITD I   ++ L+  
Sbjct: 272 ITD-IGTKKERLEQL 285


>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
 gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
          Length = 385

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 110/327 (33%), Gaps = 54/327 (16%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  VDI+           + + F              +S   
Sbjct: 56  EIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTNEFPNPHVAVQVQYTEGFSGTN 115

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +   +     + + +LG + E   ++ +   LS V++ + +  +   +  ++       
Sbjct: 116 LLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQM-MGSAATSMSTVFQKKI 174

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLI-------IPQET 205
           + SP   D  +I   +       ++    ++ N+ +  +  ++   L+       + +E 
Sbjct: 175 DISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSLVEEL 234

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQ---------------------------- 237
           L+ +   + +S  K  + +E   +P A +  Q                            
Sbjct: 235 LVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVHVPVDVQPASFSEFEHMS 294

Query: 238 ------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
                       L++ +   + L +T  T+++++ L  G +I           +  N K 
Sbjct: 295 SPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKL 354

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKS 310
           I   E+  + +N+ +R+TD I+   + 
Sbjct: 355 IAKGEVVVIDENFGVRVTDIISQKDRI 381


>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
 gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
          Length = 385

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 109/327 (33%), Gaps = 54/327 (16%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  VDI+           +   F              +S   
Sbjct: 56  EIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTDEFPNPHVAVQVQYTEGFSGTN 115

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +   +     + + +LG + E   ++ +   LS V++ + +  +   +  ++       
Sbjct: 116 LLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQM-MGSAATSMSTVFQKKI 174

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLI-------IPQET 205
           + SP   D  +I   +       ++    ++ N+ +  +  ++   L+       + +E 
Sbjct: 175 DISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSLVEEL 234

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQ---------------------------- 237
           L+ +   + +S  K  + +E   +P A +  Q                            
Sbjct: 235 LVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASFAEFEHVS 294

Query: 238 ------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
                       L++ +   + L +T  T+++++ L  G +I           +  N K 
Sbjct: 295 SPQGDSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKL 354

Query: 284 IYSCELGRVGKNYTIRITDRINFDQKS 310
           I   E+  + +N+ +R+TD I+   + 
Sbjct: 355 IAKGEVVVIDENFGVRVTDIISQRDRI 381


>gi|134280726|ref|ZP_01767436.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|134247748|gb|EBA47832.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
          Length = 310

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R  A+++                +      D         S+
Sbjct: 146 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 187

Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                   ++              +      +      SS +++ +   +   P    + 
Sbjct: 188 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 243

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL + +  ++        DV+ L+ G V+P      T A +  +  ++++  +       
Sbjct: 244 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 301

Query: 297 TI 298
            +
Sbjct: 302 CL 303


>gi|126445346|ref|YP_001061224.1| hypothetical protein BURPS668_A0218 [Burkholderia pseudomallei 668]
 gi|126224837|gb|ABN88342.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 310

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R  A+++                +      D         S+
Sbjct: 146 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 187

Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                   ++              +      +      SS +++ +   +   P    + 
Sbjct: 188 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 243

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL + +  ++        DV+ L+ G V+P      T A +  +  ++++  +       
Sbjct: 244 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 301

Query: 297 TI 298
            +
Sbjct: 302 CL 303


>gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 280

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
 gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
          Length = 287

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 94/286 (32%), Gaps = 21/286 (7%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   ++ +   +  +I +     + S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESWESLISAPYARVMISAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  --VLVTALSDLMLGGEGASKEEMNNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIENVASSFVLIIP--QETLLKTTLISLSS 216
           L        + K   +  +     + +  M     +   +L     +    KT       
Sbjct: 121 LNFTTTNAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEE 180

Query: 217 QNKSENQSEDLIDPFARKTY--------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             KS  +     D                + +N+  RI  KK  LKDVV++ IG V+   
Sbjct: 181 TTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                   +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285


>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
 gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
           [Carnobacterium sp. 17-4]
          Length = 359

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 103/329 (31%), Gaps = 50/329 (15%)

Query: 28  KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
            +T   I   +G +            +   V I+       KF  II +     V +   
Sbjct: 31  DQTQTDIIGEIGNISMSQAATTLSSILSRRVTITTPVVSCLKFQEIIDASVTPKVVTTIE 90

Query: 88  LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA----KRTIAQI 142
                + +  +  +    I + + ++            +  + +E         + +   
Sbjct: 91  FKKGLAGSNLLMMNEKDAIIIADLMMDGDGNA----EGKEFTELELSAVGEAMNQMMGSA 146

Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
           +  +   +    +  P   + +             +  V  I   MT+++ + S  + I 
Sbjct: 147 ATAMATMLERIVDILPPEVEVWKNQEQVNYDRISGDTTVCKIAFQMTVDDLIESEIMQIF 206

Query: 202 PQETLLKTTLISLSSQ-----NKSENQSEDLIDPFARK---------------------- 234
             ET+   + I L+ +     ++   ++E++  P                          
Sbjct: 207 TLETVRNISNIVLADEGEVITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELT 266

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                           + +     +   K T+KD+++L  G V+           +  NG
Sbjct: 267 HAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNG 326

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310
           K I   E+  + +++ IRIT+ ++ +Q+ 
Sbjct: 327 KLIAEGEVVVINESFGIRITNILSKEQRI 355


>gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 280

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++   +++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++   +++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|125657199|gb|ABN48687.1| hypothetical protein Bpse6_01001805 [Burkholderia pseudomallei]
          Length = 289

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R  A+++                +      D         S+
Sbjct: 125 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 166

Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                   ++              +      +      SS +++ +   +   P    + 
Sbjct: 167 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 222

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL + +  ++        DV+ L+ G V+P      T A +  +  ++++  +       
Sbjct: 223 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 280

Query: 297 TI 298
            +
Sbjct: 281 CL 282


>gi|254683265|ref|ZP_05147126.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734618|ref|ZP_05192330.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741027|ref|ZP_05198715.1| flagellar motor switch protein FliM [Bacillus anthracis str. Kruger
           B]
 gi|254755270|ref|ZP_05207304.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           Vollum]
 gi|254759806|ref|ZP_05211830.1| flagellar motor switch protein FliM [Bacillus anthracis str.
           Australia 94]
          Length = 111

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 197 FVLIIPQETLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
             + IP  ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ 
Sbjct: 1   MRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMG 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++  ++ G +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 61  EIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 104


>gi|167725908|ref|ZP_02409144.1| hypothetical protein BpseD_43225 [Burkholderia pseudomallei DM98]
          Length = 289

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R  A+++                +      D         S+
Sbjct: 125 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 166

Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                   ++              +      +      SS +++ +   +   P    + 
Sbjct: 167 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 222

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL + +  ++        DV+ L+ G V+P      T A +  +  ++++  +       
Sbjct: 223 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 280

Query: 297 TI 298
            +
Sbjct: 281 CL 282


>gi|254182911|ref|ZP_04889504.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|254299706|ref|ZP_04967155.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|157809502|gb|EDO86672.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|184213445|gb|EDU10488.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 282

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R  A+++                +      D         S+
Sbjct: 118 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 159

Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
                   ++              +      +      SS +++ +   +   P    + 
Sbjct: 160 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 215

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL + +  ++        DV+ L+ G V+P      T A +  +  ++++  +       
Sbjct: 216 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 273

Query: 297 TI 298
            +
Sbjct: 274 CL 275


>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 378

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 112/371 (30%), Gaps = 80/371 (21%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
            TSP  P +  +      DK  + +I +         L  +  +K+++   +        
Sbjct: 19  ETSPSSPTISDQ------DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSIL 68

Query: 69  KFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY--NR 125
           K+  +   F                    +      V  + + ++G + +          
Sbjct: 69  KWDELPREFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTEL 128

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTT 183
            LS +++ + +      S  L+  ++   + +P      D     +         + +  
Sbjct: 129 QLSAIQEAMNQMV-GSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187

Query: 184 INMNMTIEN-VASSFVLIIP-----------------------------QETLLKTTLIS 213
           +   MTI + + S  + +IP                             QETL +  L  
Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKEEVLRQ 247

Query: 214 LSSQNK------------SENQSEDLIDP-----------FARKTYQ---------LNVN 241
             SQ                 Q  +               F  +  +         L+V 
Sbjct: 248 TFSQTTKSQKKASQPSYTPPPQRTEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVP 307

Query: 242 IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           ++  + L +T   +++++    G +I           +  NGK I   E+  + +N+ +R
Sbjct: 308 LEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVR 367

Query: 300 ITDRINFDQKS 310
           ITD +N   + 
Sbjct: 368 ITDIVNPSNRL 378


>gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 378

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 114/371 (30%), Gaps = 80/371 (21%)

Query: 9   NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
            TSP  P +  +      DK  + +I +         L  +  +K+++   +        
Sbjct: 19  ETSPSSPTISDQ------DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSIL 68

Query: 69  KFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY--NR 125
           K+  +   F                    +      V  + + ++G + +          
Sbjct: 69  KWDELPKEFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTEL 128

Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTT 183
            LS +++ + +      S  L+  ++   + +P      D     +         + +  
Sbjct: 129 QLSAIQEAMNQMV-GSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187

Query: 184 INMNMTIEN-VASSFVLIIP-----------------------------QETLLKTTLIS 213
           +   MTI + + S  + +IP                             QET+ +  L  
Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKEEVLRQ 247

Query: 214 LSSQNK------------SENQSEDLIDP-----------FARKTYQ---------LNVN 241
            SSQ                 Q ++               F  +  +         L+V 
Sbjct: 248 TSSQTTKSQKKASQPPYTPPPQRKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVP 307

Query: 242 IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           ++  + L +T   +++++    G +I           +  NGK I   E+  + +N+ +R
Sbjct: 308 LEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVR 367

Query: 300 ITDRINFDQKS 310
           ITD +N   + 
Sbjct: 368 ITDIVNPSNRL 378


>gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221]
 gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 273

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I     L+  + E ++G          N  L   E   
Sbjct: 32  DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 86

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 87  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 144

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 145 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 204

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 205 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 263

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 264 SKKERLEQL 272


>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
 gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
           18818]
          Length = 278

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 82/204 (40%), Gaps = 14/204 (6%)

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
            L + +LG   E+ P++    L  + K+++      IS  LN      +E         +
Sbjct: 69  ALADMMLGGEGESKPEMSEDDLDAI-KEISANIFGAISTSLNS----QKELPKLNFSCSN 123

Query: 166 IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
           I+++ ++       F      N +++++ S+F ++     +      + +    +E+ S 
Sbjct: 124 IEFVTQSIELSR--FDKAYIFNFSLDSIQSNFTILANASFVGLFEGGAATPVAHAESGST 181

Query: 226 DLIDPFARK-------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            +    +            + +N+  RI  K+  LKDV+ + IG VI           + 
Sbjct: 182 PVAHALSPTEFKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLDIL 241

Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302
            + K I   E+  V  N+ I+ITD
Sbjct: 242 VDDKVIAKGEVVIVDGNFGIQITD 265


>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 84/257 (32%), Gaps = 20/257 (7%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I +     V S       S          LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISAPYARVVISAIEKEESSIELLTPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMT 189
            K++       I+  L       QE  P L        + K   +  +     + +  M 
Sbjct: 98  -KEMTSNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKME 151

Query: 190 IENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239
               +   +L          KT       + KS  +     D                + 
Sbjct: 152 ALKESQIILLTTVAFEHQFEKTHQEEKEEKTKSATEEVKTHDASLENIEIRNISMLLDVK 211

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+
Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271

Query: 300 ITDRINFDQKSLKNFLH 316
           ITD I   ++ L+   H
Sbjct: 272 ITD-IGTKKERLEQLKH 287


>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
          Length = 290

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 23/258 (8%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +     + S       S          LV  L + +LG    +  ++ N  L    K
Sbjct: 42  LISAPYARVMISAIEKEESSIELVAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF-K 98

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIE 191
           ++A      I+  L       QE  P L        + K   +  +     + +  M   
Sbjct: 99  EMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMMVFSFKMEAL 153

Query: 192 NVASSFVLI----------IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQL 238
             +   +L           + QE   +    + S+  + +     L +   R       +
Sbjct: 154 KESQIILLTTAAFERQFEKMHQEEKEEKEETTKSTAEEVKTHDASLENIEIRNISMLLDV 213

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I
Sbjct: 214 KLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGI 273

Query: 299 RITDRINFDQKSLKNFLH 316
           +ITD I   ++ L+   H
Sbjct: 274 QITD-IGTKKERLEQLKH 290


>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
 gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
           WK1]
          Length = 383

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 106/336 (31%), Gaps = 63/336 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  +    + + +   F         +    +    
Sbjct: 45  EIGNISFGSSATALSMLLNQKVEITTPNVSLVERAKVAEEFPHPYVAIQVSYTEGFLGTN 104

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + ++G      P   +   LS V++ + +  +   +  ++   S   
Sbjct: 105 LLVIKQSDAAIIADLMMGGDGTNPPAFMDEIQLSAVQEAMNQM-MGSAATSMSTIFSKKV 163

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ-------ETL 206
           + SP      D+   +       ++ +  ++  + + N + S+ + ++P        E L
Sbjct: 164 DISPPSLHLLDLKEGEGFEYLPPDDVLVKVSFRLKVGNLIDSNIMQLLPIHFAKELVENL 223

Query: 207 L----------------KTTLISLSSQNKSENQSEDLIDPFARK---------------- 234
           L                +    + S+Q K    S       A +                
Sbjct: 224 LNPSSTKTETSATINTNEPHQTAPSAQTKPAPSSAQQTQKEAPQHFGTGAVQQPVNVQPV 283

Query: 235 ------------------TYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTC 274
                                L++ +   + L +T  +++D+++L  G +I         
Sbjct: 284 AFASFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKLAGEP 343

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  N K I   E+  + +N+ +R+T  I+   + 
Sbjct: 344 VDILVNNKLIAKGEVVVIDENFGVRVTSIISQSDRL 379


>gi|114766080|ref|ZP_01445089.1| possible flagellar switch protein FliM [Pelagibaca bermudensis
           HTCC2601]
 gi|114541635|gb|EAU44676.1| possible flagellar switch protein FliM [Roseovarius sp. HTCC2601]
          Length = 396

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 14/187 (7%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTI----AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           T   +  R L+  +  +    +     +    L       Q +        +        
Sbjct: 107 TQMPVEERPLTQTDAAMMAPLLDSALERFERYLEDHPLQPQIAGFRFGAMVEDSRTAGLL 166

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
              S      +++++ +        L +P          +     +          P  +
Sbjct: 167 LDASGYRAFRVSLDLALGRRTGELALFLPDRAEAAAADEAGDLGQEG---------PHEQ 217

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRV 292
           K   L V++D  ++     L     L+ G +IP          L A  G  +    LG++
Sbjct: 218 KMKLLPVHMDAVLHRLVLPLSAAEKLQPGDLIPLPPEALDGVELLAGDGSGVAGGRLGQI 277

Query: 293 GKNYTIR 299
                +R
Sbjct: 278 NGMRAVR 284


>gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I  S  L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFNITN-GGKIGILASAVLMSAIGEWMMG----EEEITKNDQLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQE--TLLKTTLISLSSQNKSENQ-SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q    +L   L    + N   N+ +E+       +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKLAETGNANTDSNRNAEEKAIMLGEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|238762374|ref|ZP_04623345.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638]
 gi|238699359|gb|EEP92105.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638]
          Length = 291

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 83/230 (36%), Gaps = 32/230 (13%)

Query: 93  SNFFIGCSNNLVITLLENLLG--ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQ 148
            N        L++ +L +  G      T+  L N   +  E++L  +   +I+ ++    
Sbjct: 85  GNIAFDIDRTLLLNILNDYYGLTKEKSTVSVLDNTPKTQTEERLKNKLSIEIADLILNQP 144

Query: 149 CISTT-----QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
                       S+P +   Y +D+L K+             + +   NV          
Sbjct: 145 VFGEPLVIKNNNSTPIVSWSYQMDFLLKDYEN------VGFTLLIDTPNV---------- 188

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           + LL T    +  + K++  S   +  F +   QL + + ++++    TL D++ +K G 
Sbjct: 189 DRLLNTLHTGIKEEKKTQTLS---VTQFNQLVSQLPIQLTSQLSCSDLTLFDLMAIKEGD 245

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
           +IP    E+         + ++S  +        +  ++  +   +   +
Sbjct: 246 IIPTSLPERFPV--FIGKQPLFSAVVTESRGKLFL--SEFNDKTNEMNHD 291


>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 269

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 83/238 (34%), Gaps = 10/238 (4%)

Query: 65  CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
            +  +    I      F+    S+S          +  +   L + +LG   E    + +
Sbjct: 26  VEIKQQGEKIVDIIPPFIKVNVSVSP-KGEIVFILTPEIATALGDMMLGGEGEARTDIND 84

Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
             L        K  ++ I   L   +              DI +++ N +   +++   +
Sbjct: 85  EDL-----DATKEIVSNIFGSLTSTLEAQDNMENLTFKVEDIAFVETNEDF--SKYAYFL 137

Query: 185 NMNMTIENVASSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
           ++   + +V     ++  ++ + +    I       S   ++++          + + + 
Sbjct: 138 DLICKVASVEKECFVLFDKDFVSIFNNDIKDKISESSHELNKEIPSQL-DMLMDVKLQLR 196

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            RI  K   LKDV+++ IG ++           +    K+I   E+  V  N+ I+IT
Sbjct: 197 VRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGIQIT 254


>gi|49184601|ref|YP_027853.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|65319044|ref|ZP_00392003.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str.
           A2012]
 gi|227815464|ref|YP_002815473.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC
           684]
 gi|49178528|gb|AAT53904.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|227003444|gb|ACP13187.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC
           684]
          Length = 120

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 201 IPQETLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
           IP  ++ +    L S +    S ++ +        K  Q+   +   I  +K T+ ++  
Sbjct: 14  IPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQ 73

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++ G +IP   +     +   +GK  ++C +G+ G    +
Sbjct: 74  IEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 113


>gi|49184600|ref|YP_027852.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|65319043|ref|ZP_00392002.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str.
           A2012]
 gi|227815465|ref|YP_002815474.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. CDC 684]
 gi|254683264|ref|ZP_05147125.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. CNEVA-9066]
 gi|254734617|ref|ZP_05192329.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Western North America USA6153]
 gi|254741026|ref|ZP_05198714.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Kruger B]
 gi|254755269|ref|ZP_05207303.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Vollum]
 gi|254759805|ref|ZP_05211829.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. Australia 94]
 gi|49178527|gb|AAT53903.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|227004068|gb|ACP13811.1| putative flagellar motor switch protein FliM [Bacillus anthracis
           str. CDC 684]
          Length = 200

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 29  KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84
           ++++ I+S+ G    + L      +M + +++  ++ +   F S  +    +++      
Sbjct: 54  RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
              L        I      VI + E  LG           R L+  E          +  
Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167

Query: 145 VLNQCISTTQESSPNL 160
            L Q   +     P  
Sbjct: 168 NLEQSFESVVAIEPKF 183


>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
 gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
          Length = 288

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 23/257 (8%)

Query: 73  IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
           +I +     + S       S          LV  L + +LG    +  ++ N  L    K
Sbjct: 42  LISAPYARVMVSAIEKEESSIELVAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF-K 98

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           ++A      I+  L       QE  P L        + K   +  + +   I  +  +E 
Sbjct: 99  EMASNIFGAIATSLKS-----QELLPKLNFTTTNAEIAKELPKKED-YAKMIVFSFKMEA 152

Query: 193 VASSFVLIIPQETLLKT-------TLISLSSQNKSENQSEDLIDPFARKTY------QLN 239
           +  S ++++      +             + ++ +E            +         + 
Sbjct: 153 LKESQIILLTTAAFERQFEKTHQEEKEEETKKSATEEVKTHDASLENIEIRNISMLLDVK 212

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N+ I+
Sbjct: 213 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 272

Query: 300 ITDRINFDQKSLKNFLH 316
           ITD I   ++ L+   H
Sbjct: 273 ITD-IGTKKERLEQLKH 288


>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
          Length = 287

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 18/225 (8%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P    
Sbjct: 70  LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKFNF 123

Query: 163 FYDIDYLKKNTNRLSNEFVTTI-NMNMTIENVASSFVLIIP------QETLLKTTLISLS 215
                 + K   +  +     + +  M     +   +L         ++T  +    +  
Sbjct: 124 TTTNAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEETTK 183

Query: 216 SQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           S  +     +  ++    +       + +N+  RI  KK  LKDVV++ IG V+      
Sbjct: 184 SAAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 280

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++   +++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIILSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|167572946|ref|ZP_02365820.1| translocation protein in type III secretion [Burkholderia
           oklahomensis C6786]
          Length = 361

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
              +V +  ++      L  + +L+ G V+    +      L   GK      L  VG  
Sbjct: 291 LDAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGFVTLQVAGKPFARGTLLDVGGR 350

Query: 296 YTIRITDRINF 306
             +RI   +  
Sbjct: 351 LAVRIEHLLPA 361


>gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 280

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 280

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V++  ++++      I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMG----EEEITKNDKLGPDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   ++           +++ ++ +    +F      ++ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245
               L + Q      +     + N S +    +E+     + +         + + +  R
Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           I  KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I 
Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270

Query: 306 FDQKSLKNF 314
             ++ L+  
Sbjct: 271 SKKERLEQL 279


>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 376

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 111/352 (31%), Gaps = 73/352 (20%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85
           DK  + +I +         L  +  +K+++   I        K+  +   F         
Sbjct: 30  DKDVLGEIGNISMGTAATTLSILLNQKVNITTPI----VSVLKWEELPKEFPVPYVAIKV 85

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                      +      V  + + ++G +   E   +L    LS +++ + +      S
Sbjct: 86  VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEAMNQMV-GSAS 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200
             L+  ++   + +P      D     +         + +  +   MTI + + S  + +
Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQL 204

Query: 201 IP-----------------------------QETLLKTTLISLSSQ-------------- 217
           IP                             QE++ +  L   SSQ              
Sbjct: 205 IPVDFAKQLVDAMLKNALGTPAQIETSAQSQQESVKEEVLRQPSSQPTKSQKAAPQPSYT 264

Query: 218 --------NKSENQSEDLIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVT 258
                    +  N S    + F  +  +         L+V ++  + L +T   +++++ 
Sbjct: 265 PPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILE 324

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 325 FSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376


>gi|167949199|ref|ZP_02536273.1| flagellar motor switch protein FliM [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 111

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 207 LKTTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
           ++     L +  +S+   + E        +     + + + +     TL+++  L  G +
Sbjct: 1   MEPIRELLDAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGDI 60

Query: 265 IPFLHREKTCAI 276
           IP    E+    
Sbjct: 61  IPIELPEEVEVT 72


>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
 gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
          Length = 261

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 15/175 (8%)

Query: 140 AQISAVLNQCISTT--------QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
            + +  L+     +         + SP       +   +  T+RL+  F       +  E
Sbjct: 91  DEHAMALSSIFEASCNELCQHLSQKSPVTVQVERMSAPELPTDRLAELF-------LEAE 143

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                  +++  +  L TT  + S+Q  S  +              + +N+  R   ++ 
Sbjct: 144 GTKIRVSILLFFDQQLVTTYQNASAQTFSFPEVTGTSTSNLNLVLDVELNVTLRFGQRQL 203

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           +L++V+ L  G V+    +      L  +GK +   E   +  NY +RIT  +  
Sbjct: 204 SLREVLDLTSGSVVELDRQVDEPVELVLDGKVVARGEAVIIDGNYGMRITQVLQQ 258


>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
 gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
 gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
          Length = 548

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 96/300 (32%), Gaps = 36/300 (12%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +  +       +    ++  V IS  + ++    H  +     FV           +  
Sbjct: 253 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-NGVPVPFVILNVDFVEGLKNEN 311

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151
               + ++ +T+++ ++  + E  P    + LS +E      +  + +   +  +++   
Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368

Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209
              + +P    F  + + ++     +  + +  I  N+ I ++  S    I+      + 
Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGEAMEVDELVQITFNIEIGDLLQSKMYQILSIAEAKEM 428

Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244
               L               + E      I P   +  +              + +N+  
Sbjct: 429 VRRLLYPMVEEQEEIVEEVIEEEKIPAPAIQPIEYQEVKQVEPVYMDASILKNVEMNVKF 488

Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                  T++D+++L+  + +           +  N   +   EL  V   + +++T  +
Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548


>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
 gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
          Length = 108

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 27/79 (34%)

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
             DP   +   +NV I   +      ++ ++ +  G VIP          + AN   +  
Sbjct: 21  WSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVAR 80

Query: 287 CELGRVGKNYTIRITDRIN 305
            E+        I +T   N
Sbjct: 81  GEIQISDDKIAIAVTREAN 99


>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
 gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
           Nor1]
          Length = 376

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 106/357 (29%), Gaps = 72/357 (20%)

Query: 11  SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
           SP+ P L       LG+   I  I           L       +   V I+         
Sbjct: 23  SPVVPELDDMAKDALGE---IGNICMGSAATTLSIL-------LGRRVSITTPQVSVTTL 72

Query: 71  SHIIHSFKENF-VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
           + I   +   + V              +       + + + ++G      P   N    +
Sbjct: 73  NEIKRQYPLPYLVIEVYYSHGILGTNLLAIRQQDALIIADLMMGGDGSNPPTELNDLYMS 132

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS--NEFVTTINMN 187
              +   + +   +  ++       + SP   + +D   +  N + ++  +E + +++  
Sbjct: 133 AVSEAMNQMMGSTATSMSTVFKKKVDISPPQVNVFDF-GVDGNISAMAAGDEPIVSVSFR 191

Query: 188 MTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR------------- 233
           M +E+ + S  + IIP     +     +++   +   +       A              
Sbjct: 192 MEVEDLIDSEIMQIIPINVAKEMVESLMAAIQPTPKTTTSAAPNAATSTPQPVMAPARET 251

Query: 234 ------------------------------------KTYQLNVNIDTRINLKKTT----- 252
                                                T   N+N+   + L+ T      
Sbjct: 252 NFAQAQQAAALPKTHQPLTNVTVQPVQFAPLKPTTPTTSDTNINLIMDVPLQVTVELGRT 311

Query: 253 ---LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              +++++ L  G V+           +  NGK I   E+  + +N+ +RIT+ ++ 
Sbjct: 312 RKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITEIVSP 368


>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
           12809]
          Length = 299

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 102/307 (33%), Gaps = 47/307 (15%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
           E   S+   + K+          D D+ +S++   SG    +   ++   +       S 
Sbjct: 7   ENRHSTFTDVAKEVFQSTLNSMFDKDIKVSFSEVSSGGPDDLAGGYEGQVLIIVTEEKSG 66

Query: 92  SSNFFIGCSNNLVI-----TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
                +  + ++        +++       +   +  ++    + K+LA + +A ++  L
Sbjct: 67  LEAGLMFKTADITFLTNLMMMMDEP----GKESLEDDDKD--AI-KELASQALAAVTVPL 119

Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
            +   T  + S  ++D    D          ++    I+ ++ I +  ++F         
Sbjct: 120 EE--KTQVKVSFRIDDVMVNDAPALF----QSDAYMIIDADLGIGDQNTTF------RFY 167

Query: 207 LKTTLISLSSQNKSENQS--------EDLIDPFARK---------------TYQLNVNID 243
               L++L      E           ED  +P                      ++V + 
Sbjct: 168 TDINLMNLFGGGDDEEPDFGSAFTFPEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVS 227

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            ++   K  LKD++T+  G +I           L  N K I   E+  V   +  RI + 
Sbjct: 228 VKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARGEVVIVDGYFGFRIKEI 287

Query: 304 INFDQKS 310
           ++  ++ 
Sbjct: 288 VSRAERI 294


>gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
          Length = 116

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
             LL         + ++E  S  L      +  Q  + ++ R+ ++   +KDV+ L+ G 
Sbjct: 16  TALLAPAQGDSPLEAEAETASLSLRRTIEERVTQAPLRLEIRLPIRGLRVKDVLALRKGA 75

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           +                G+++   E   + K   +R+T
Sbjct: 76  IFETQWPADEDIPGDCGGQQLVWAEFEVIDKKLAVRVT 113


>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
           [Thermoanaerobacter tengcongensis MB4]
          Length = 366

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 51/303 (16%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           V I+        +  +   F   +V               +       + + + ++G   
Sbjct: 61  VTITTPKVSVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDG 120

Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
           +    ++ +  LS V + + +  I   +  L+  ++     SP      D          
Sbjct: 121 KVEEGEITDLHLSAVGEAMNQM-IGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVA 179

Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPF 231
                V  +   M + ++  S  + +IP    + L+K+ L   ++      + +++    
Sbjct: 180 FPQGDVVRVAFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQATTSTSPPAEVKEMKKES 239

Query: 232 ARKTYQ------------------------------------------LNVNIDTRINLK 249
             ++ +                                          L+V +   + L 
Sbjct: 240 KGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELG 299

Query: 250 KTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           KT   +KD++ L  G +I           + ANGK I   E+  + +N+ +RITD ++  
Sbjct: 300 KTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPG 359

Query: 308 QKS 310
           ++ 
Sbjct: 360 KRI 362


>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
 gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
 gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
          Length = 293

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 21/261 (8%)

Query: 70  FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
               I  F  N   +   ++  +    +     +   L + ++G   ++   L    L  
Sbjct: 35  VGDFI--FVNNASINV-HIADTNLTITLAIPIPMATALADLMVGGEGKSKETLEPDDLDA 91

Query: 130 VEKKLAKRTIAQISAVLNQ-------CISTTQES---SPNLEDFYD--IDYLKKNTNRLS 177
           + K++       ++  L                      +L D Y    ++        S
Sbjct: 92  I-KEIGSNVFGALTTALKSQEVLPKLSFEIEGAVFAHDASLLDPYSDGFEFSFSLDQIQS 150

Query: 178 NEFVTTINMNMTIENVASSF-VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT- 235
           + F+    + +           +  P +      +  +   N   +    L     R   
Sbjct: 151 SFFIFCGGLFIETFKKKEVIKNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNIN 210

Query: 236 --YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               + +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V 
Sbjct: 211 MLLDIKLNVRVRIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIVD 270

Query: 294 KNYTIRITDRINFDQKSLKNF 314
            N+ I+IT+ I   ++ L+  
Sbjct: 271 GNFGIQITE-IGTKKERLEQL 290


>gi|304412522|ref|ZP_07394128.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS183]
 gi|307307181|ref|ZP_07586919.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           BA175]
 gi|304349164|gb|EFM13576.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS183]
 gi|306910420|gb|EFN40851.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           BA175]
          Length = 293

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 18/196 (9%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            +  T      R+ S  E +LAK+ +  +   L      T      L   +         
Sbjct: 112 GNTSTPLSSPLRNPSQSEFRLAKKLLLSVVDELPNSTIDTNTLEVELIKGH--------- 162

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
             +        + N T  ++    +       L +  L  L+ Q K    S DL    A 
Sbjct: 163 --MPLTVSAVWSFNFTNGSLTPPMLFC-----LTEHLLGHLAEQPKKSEISADLPAKLAV 215

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               L + +   +      ++ +  LK G ++P     KT   LS     ++   +    
Sbjct: 216 WLKSLPIKMQLTLGQHSIPVQSLSQLKTGDILPINLYPKTL--LSIGNTTLFHASVHSHE 273

Query: 294 KNYTIRITDRINFDQK 309
                ++T  +  +++
Sbjct: 274 GQMVAKLTQDVYQNEE 289


>gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia
           cenocepacia MC0-3]
          Length = 290

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 18/206 (8%)

Query: 91  WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
                 + C   L++ LL    G S +          +  E++ +    AQ    L    
Sbjct: 94  TRGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETGAERRFS----AQQHTALLTAF 149

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
           +     S  L D  +      +        V  + ++  +  V            L    
Sbjct: 150 A-----SAMLGDQAEPFSPNGDMLPGPGVRVLRMTISDRLRKVGGDVEF-----ALDDMW 199

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           L  L ++  +++         A     + V I   +  K   L +++ ++ G V+P    
Sbjct: 200 LDHLFARLDAQHLRPAPDSAQAN--VSIPVTISVHVLSKNMRLDELLRMRPGDVLPVRLP 257

Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
           E     +  N   +Y   L       
Sbjct: 258 E--TVDVLVNNVRLYRAALAEHQGAL 281


>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
          Length = 290

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 25/261 (9%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
             +I       V S       S          LV  L + +LG    +  ++ N  L   
Sbjct: 40  GSLISVPYARVVISAIEKEESSVELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
            K++A      I+  L       QE  P L        + K   +  + +   I  +  +
Sbjct: 98  -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKED-YAKMIVFSFKM 150

Query: 191 ENVASSFVLIIPQETLLKT---------TLISLSSQNKSENQSEDLIDPFARKTY----- 236
           E +  S ++++      +               ++++ +E            +       
Sbjct: 151 EALQESQIILLTTVAFERQFKKTHQEEKEEKEETTKSATEEVKTHDASLENIEIRNISML 210

Query: 237 -QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + +N+  RI  KK  LKDVV++ IG V+           +  + K I   E+  V  N
Sbjct: 211 LDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGN 270

Query: 296 YTIRITDRINFDQKSLKNFLH 316
           + I+ITD I   ++ L+   H
Sbjct: 271 FGIQITD-IGTKKERLEQLKH 290


>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 360

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L     T++D++ L  G +I           L  NGK I   E+  + +N
Sbjct: 281 MDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEN 340

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD IN   + 
Sbjct: 341 FGVRVTDIINPMDRL 355


>gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
 gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
          Length = 279

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 16/248 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            + K   V+    +S       I     L+  + E ++G          N  L   E   
Sbjct: 39  DTLKPPLVYVNFGVS-SGGRIGILAGAVLMSAIGEWMMG----EEKITKNDKLGADEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +     +   +E           ++++++ +    +FV   N ++ I+ + 
Sbjct: 94  AKEAIQNIISAFTTSLGAQKELPKMEFSLSSCEFIEESIDLK--DFVKLYNYDIKIDGLE 151

Query: 195 SSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLI---DPFARK--TYQLNVNIDTRI 246
               L +     +TL K+       +  + +  E ++   +          + + +  RI
Sbjct: 152 EQISLAMDDKLYKTLTKSGDAKAQQKEGAISSGEAMMMLGEGLKNINLIMDVRLPVRVRI 211

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             KK  LKDV+T+ IG V+           +    K I   E+  V  N+ ++IT+ I  
Sbjct: 212 GNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IGT 270

Query: 307 DQKSLKNF 314
            ++ L+  
Sbjct: 271 KKERLEQL 278


>gi|332162916|ref|YP_004299493.1| flagellar motor switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667146|gb|ADZ43790.1| Flagellar motor switch protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862339|emb|CBX72499.1| hypothetical protein YEW_GP28300 [Yersinia enterocolitica W22703]
          Length = 272

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 80/226 (35%), Gaps = 24/226 (10%)

Query: 93  SNFFIGCSNNLVITLLENLLG--ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
            N       +L++ +L +  G          + N   +  E +L  +   +I+ +    +
Sbjct: 66  GNIAFDIERSLLLNILNDYYGLTKEKNNSSIVDNTPKTQTEDRLKNKLSIEIADL---IL 122

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII--PQ-ETLL 207
           +      P +    +   +   + R+        +  +        F L+I  P  + LL
Sbjct: 123 NQPMFGEPLVIKNNNATPIVNWSYRM--------DFLLKDYEDGG-FTLLIDTPHVDRLL 173

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
            T       + K++  SE     F +   QL + + ++++  + T  D++ +K G +IP 
Sbjct: 174 NTLHTESKEKKKTQTLSEK---QFNQLVSQLPIRLTSQLSCSELTFFDLMAIKEGDIIPA 230

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
              E+         + ++S  +        +  ++  +   +   +
Sbjct: 231 SLPERFPV--FIGKQPLFSAVVTESRGKLFL--SEFNDQTNEMTHD 272


>gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4]
 gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4]
          Length = 321

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL + +   +  +  TL+ +  L+ G              + ANGK I  CEL  + + 
Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPVSNPVTMRANGKIIGECELVNINER 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGSQE 319


>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
 gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
          Length = 125

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           LK    +     + +  S+DL +   R+  ++ + ++  I      L +++ L  G V+ 
Sbjct: 19  LKEQQEAEGRHGEGQGDSQDLSE-KVRRFLEIPLELEVVIGRTTLKLGELLHLGPGSVVE 77

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  ++   +  NGK +   E+  V   + +RITD I  +++ 
Sbjct: 78  LDNHVESPVDILVNGKLVAKGEIVVVEDKFGVRITDIIAREERI 121


>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
 gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
           12563]
          Length = 359

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L     T++D++ L  G +I           L  NGK I   E+  + +N
Sbjct: 280 MDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEN 339

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD IN   + 
Sbjct: 340 FGVRVTDIINPMDRL 354


>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
 gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
           15579]
          Length = 390

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 102/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           +  SF+  N        S      
Sbjct: 54  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKDSFEIPNIALEVKYTSGIVGEN 113

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 114 LLVMKIDDAAVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 171

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  S+ + ++P +T  K  
Sbjct: 172 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSNIMQLLPMKTAKKIV 231

Query: 211 LISL-------------------------SSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I +                         +   ++  Q      P  R+  ++ V     
Sbjct: 232 AIMMGEESMDEPSVENNSTPAPIVEEKKSAKAVEAPKQEIVYEKPIEREAPKVEVKQASF 291

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 292 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 351

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT+ ++  ++ 
Sbjct: 352 IQVNGKKVAYGEVVVVDENFGVRITNIVSSQERI 385


>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
 gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sibiricum 255-15]
          Length = 376

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 98/330 (29%), Gaps = 57/330 (17%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+    +      +   +              +    
Sbjct: 45  EVGNISLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEGFKGEN 104

Query: 96  FIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
            +  +      +   ++G     +   ++   +LS V++ + +  +   +  ++   S  
Sbjct: 105 VLILTQRDASVIANLMMGGDGVVDESLEMEPIALSAVQEAMNQM-MGAAATSMSTVFSMR 163

Query: 154 QESSPNLEDFYDIDYLKKNTNRLS---NEFVTTINMNMTIENVASSFVL----------- 199
            + SP   + +D    K   +  S   +  +   ++ +     +    L           
Sbjct: 164 IDISPPAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSKQLIQ 223

Query: 200 --------------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL------- 238
                         I P  +         + Q + E + E   +                
Sbjct: 224 KLFSASTTTTESAPIAPTSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQF 283

Query: 239 ----------------NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                           +V ++  + L +T  +++D++ L  G +I           +  N
Sbjct: 284 SEVQQEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVN 343

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              I + E+  + +N+ +RIT+ +N  ++ 
Sbjct: 344 NTLIATGEVVVIEENFGVRITEIVNTKERL 373


>gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula
           baltica SH 1]
 gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment]
           [Rhodopirellula baltica SH 1]
          Length = 144

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           ++  +   ++++K    S      +  K  ++   ++  +  KK  L+ ++ L  G ++ 
Sbjct: 42  IQGRMSENATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLT 101

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           F         L A G  I + E  ++G  + +R+ +
Sbjct: 102 FDVHCDRPLTLRAGGHPIATGETVKIGDKFGLRVRE 137


>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 375

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 111/351 (31%), Gaps = 72/351 (20%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85
           DK  + +I +         L  +  +K+++   I        K+  +   F         
Sbjct: 30  DKDVLGEIGNISMGTAATTLSILLNQKVNITTPI----VSILKWEELPKEFPVPYVAIKV 85

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                      +      V  + + ++G +   E   +L    LS +++ + +      S
Sbjct: 86  VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEAMNQMV-GSAS 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200
             L+  ++   + +P      D     +         + +  +   MTI + + S  + +
Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQL 204

Query: 201 IP------------QETLLKTTLISLSSQNKSENQSED---------------------- 226
           IP            + TL     I +S+Q + E   E+                      
Sbjct: 205 IPVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKEEVPKQPSSQSTKTQKAAPQPFYT 264

Query: 227 ----------------LIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVTL 259
                             + F  +  +         L+V ++  + L +T   +++++  
Sbjct: 265 PPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEF 324

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 325 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375


>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 366

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 51/303 (16%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           V I+        +  +   F   +V               +       + + + ++G   
Sbjct: 61  VTITTPKVSVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDG 120

Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
           +    ++ +  LS V + + +  I   +  L+  ++     SP      D          
Sbjct: 121 KVEEGEITDLHLSAVGEAMNQM-IGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVA 179

Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPF 231
                V  +   M + ++  S  + +IP    + L+K+ L   ++      + +++    
Sbjct: 180 FPQGDVVRVAFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQTTTSTSPPAEVKEMKKES 239

Query: 232 ARKTYQ------------------------------------------LNVNIDTRINLK 249
             ++ +                                          L+V +   + L 
Sbjct: 240 KGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELG 299

Query: 250 KTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           KT   +KD++ L  G +I           + ANGK I   E+  + +N+ +RITD ++  
Sbjct: 300 KTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPG 359

Query: 308 QKS 310
           ++ 
Sbjct: 360 KRI 362


>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
 gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
          Length = 378

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 93/334 (27%), Gaps = 61/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  VDI+  S      S I   F              +  + 
Sbjct: 42  EIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGFDGSN 101

Query: 96  FIGCSNNLVITLLENLLGASHET-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + ++G       P L    LS V++ + +  +   +  ++   S   
Sbjct: 102 LLVVEQSDAAIIADLMIGGDGRGADPSLGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKI 160

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSF--------------- 197
           + SP   +  D+   K       ++ +  ++  + +  +  +S                 
Sbjct: 161 DISPPRVELLDVMEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLIADL 220

Query: 198 ------------VLIIPQETLLKTTLI---SLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
                        +  PQET              Q K E          A       V  
Sbjct: 221 MTADQHESEAAETVSEPQETYETPQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAPVEF 280

Query: 243 DTR--------------------------INLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                        +   K ++K+++ L  G +I           
Sbjct: 281 QAFDHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVD 340

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  N + +   E+  + +N+ +R+TD ++   + 
Sbjct: 341 ILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 374


>gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 321

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL + +   +  +  TL+ +  L+ G              + ANGK I  CEL  + + 
Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVTMRANGKIIGECELVNINER 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGSQE 319


>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 375

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 111/351 (31%), Gaps = 72/351 (20%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85
           DK  + +I +         L  +  +K+++   I        K+  +   F         
Sbjct: 30  DKDVLGEIGNISMGTAATTLSILLNQKVNITTPI----VSILKWEELPKEFPVPYVAIKV 85

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                      +      V  + + ++G +   E   +L    LS +++ + +      S
Sbjct: 86  VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEAMNQMV-GSAS 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200
             L+  ++   + +P      D     +         + +  +   MTI + + S  + +
Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQL 204

Query: 201 IP------------QETLLKTTLISLSSQNKSENQSED---------------------- 226
           IP            + TL     I +S+Q + E   E+                      
Sbjct: 205 IPVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKEEVPKQPSSQSTKTQKAAPQPSYT 264

Query: 227 ----------------LIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVTL 259
                             + F  +  +         L+V ++  + L +T   +++++  
Sbjct: 265 PPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEF 324

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 325 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375


>gi|157373222|ref|YP_001471822.1| hypothetical protein Ssed_0081 [Shewanella sediminis HAW-EB3]
 gi|157315596|gb|ABV34694.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 288

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 67/191 (35%), Gaps = 18/191 (9%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            S  T+ +   R+ S  E +LAK+ +     VL           P  E   +   L+   
Sbjct: 112 GSLATLLKSPLRAPSQSEFRLAKKLMLAALKVL-----------PTAELDENALELELVV 160

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
           N    +      +   +E+  +  +  +      +  L  +S Q      + DL +  + 
Sbjct: 161 NSTPIDSPVIWEIAFPVEHKVAPMLFCM-----TEHLLGLMSEQPSQYMATPDLAEKLSY 215

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +  Q+ + I   +  + T +  +  L++G ++P      +   ++   + ++   +    
Sbjct: 216 RLRQIPIKILFELGRQSTPVTSLHGLEVGDILPMNL--HSRCPVTVGKRPLFYAAIHTHD 273

Query: 294 KNYTIRITDRI 304
                ++   I
Sbjct: 274 GQMVAKLAQDI 284


>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
 gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Bacillus pumilus
           ATCC 7061]
          Length = 374

 Score = 47.0 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 100/334 (29%), Gaps = 64/334 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  +    + S +   F              +S++ 
Sbjct: 41  EIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVNYTEGFSASN 100

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         + + ++G          + SLS +     +  + Q+    +  ++   +
Sbjct: 101 LLVVQQTDAAVIADLMMGGDGTN----ADPSLSEIHLSAVQEAMNQMMGSAATSMSTVFN 156

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP-------- 202
              + SP   +  D+   +      + E +  ++  + I   + S+ + + P        
Sbjct: 157 KKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITFAKDLI 216

Query: 203 ----------------QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNI 242
                           Q +  +    +  +Q+    Q+         K         V  
Sbjct: 217 AELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNVAPVEF 276

Query: 243 DTRINLKKTT--------------------------LKDVVTLKIGQVIPFLHREKTCAI 276
           +     + TT                          +K+V+ L  G +I           
Sbjct: 277 EAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVD 336

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 337 ILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370


>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 111/351 (31%), Gaps = 72/351 (20%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85
           DK  + +I +         L  +  +K+++   +        K+  +   F         
Sbjct: 30  DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSVLKWDELPKEFPVPYVAIKV 85

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                      +      V  + + ++G +   E   QL    LS +++ + +      S
Sbjct: 86  VYKEGLDGINLLILKKEDVEIIADLMMGGTGQVEFTEQLTELQLSAIQEAMNQMV-GSAS 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200
             L+  ++   + +P      D     +         + +  I   MTI + + S  + +
Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQL 204

Query: 201 IPQ-----------------------------ETLLKTTLISLSSQ-------------- 217
           IP                              ET+ + TL   +SQ              
Sbjct: 205 IPVDFAKQLVDAMFKNTFNASAQAETSAKSHSETVKEETLKQPASQPTNKQKTSPQSYTP 264

Query: 218 -------NKSENQSEDLIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVTL 259
                   +  N S    + F  +  +         L+V ++  + L +T   +++++  
Sbjct: 265 PPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEF 324

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 325 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375


>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 286

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 19/235 (8%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
               +  + ++   + + +LG       ++    L    K++    ++  S  L    + 
Sbjct: 57  GRMRVTVATSIATAIGDMMLGGEGLEKEEMDAEDLDAT-KEIVSNILSSFSRSLASQKNM 115

Query: 153 TQ-----ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII------ 201
            +     ES   ++   +I++       + N  +   +  +    ++S    ++      
Sbjct: 116 PKLEFDIESVEYIDANSEIEFRGYEKLFIYNLAIHMSHDTIAFA-ISSELTPLVEDMPRM 174

Query: 202 --PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
             P+E++ ++ LI       S +  E            + + I  RI  KK  LKDV+++
Sbjct: 175 DTPKESIPESALIEPKKVVPSMSPEEISNIEL---IKDVRLPIRVRIGSKKMLLKDVLSM 231

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            IG VI           +    K I   E+  V  N+ ++I + I   ++ L+  
Sbjct: 232 DIGSVIELDQLANDPLEILVGDKVIAMGEVVIVDGNFGVQIGE-IGTKRERLEKL 285


>gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium
           violaceum ATCC 12472]
 gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins
           [Chromobacterium violaceum ATCC 12472]
          Length = 296

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L V ++  +   + TL ++  L    V+P     +    L ANG  +   EL ++    
Sbjct: 222 RLPVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRL 281

Query: 297 TIRITD 302
            + +  
Sbjct: 282 GVEVAQ 287


>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
          Length = 290

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 26/292 (8%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   +S     F  +I +     + S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISTPYARVMLSAIEKEEGSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  --VLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAITTSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
           L        + K   +  + +   +  +  +E +  S ++++      +    +   + +
Sbjct: 121 LNFTTINAEIAKELPKKED-YTKAVVFSFKMEAIKESQIILLTTAAFERQFEKTHKEEKE 179

Query: 220 SENQSEDLIDPFARK---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
              +S        +                   + +N+  RI  KK  LKDVV++ IG V
Sbjct: 180 ETIKSTTEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSV 239

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
           +           +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 240 VELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290


>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
 gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
          Length = 149

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           E +        S++N+    +   I    ++   + ++I   I     T+K+++ L+ G 
Sbjct: 37  EAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIGTTVITIKELLNLRPGS 96

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           V+       +   + ANGK I   EL  VG+N+ IRI + I  +++
Sbjct: 97  VMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEIIEKEER 142


>gi|213023115|ref|ZP_03337562.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 67

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              L  ++ LK G V+P         I   +G  + + + G V   Y +R+   IN 
Sbjct: 2   PLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 56


>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 377

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 74/353 (20%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85
           DK  + +I +         L  +  +K+ +   I        K+  +   F         
Sbjct: 30  DKDVLGEIGNISMGTAATTLSILLNQKVSITTPI----VSVLKWDELPKEFPVPYVAIKV 85

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143
                      +      V  + + ++G S   E   +L    LS +++ + +      S
Sbjct: 86  VYKEGLDGVNLLVLKKEDVEIIADLMMGGSGSIEFSEELSELQLSAIQEAMNQMV-GSAS 144

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200
             L+  ++   + SP      D     +       S + +  +   MTI + + S  + +
Sbjct: 145 TSLSSMLNLKIDISPPEAFVIDFAQNAEEMIPELKSADEIVKVAFRMTIGDLIDSQIMQL 204

Query: 201 IPQ-------ETLLKTTLISLSSQNKSE-------------------------------- 221
           IP          +L +TL + S Q KSE                                
Sbjct: 205 IPVDFAKQLVNAMLNSTLSTSSVQEKSELKTSTQESTKTIEKTVKSEQSKKQQTGASLQS 264

Query: 222 -------------NQSEDLIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVV 257
                        N S    + F  +  +         L+V ++  + L +T   +++++
Sbjct: 265 FQPKKEEKSERVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREIL 324

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
               G +I           +  NGK I   E+  + +++ +RITD +N   + 
Sbjct: 325 EFSTGSIIELDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIVNPSNRL 377


>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
          Length = 290

 Score = 46.6 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 96/291 (32%), Gaps = 24/291 (8%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   ++ +   +  +I       V S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESWESLISVPYARVVISAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  --VLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIENVASSFVLI-------IPQETLLKTTL 211
           L        + K   +  +     + +  M     +   +L          +    +   
Sbjct: 121 LNFTTINAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAVFERQFEKTHQEEKEE 180

Query: 212 ISLSSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              ++++ +E            +         + +N+  RI  KK  LKDVV++ IG V+
Sbjct: 181 KEETTKSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 240

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                      +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 241 ELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290


>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
 gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
          Length = 374

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/334 (10%), Positives = 103/334 (30%), Gaps = 64/334 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  +    + S +   F              +S++ 
Sbjct: 41  EIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVNYTEGFSASN 100

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         + + ++G          + SLS +     +  + Q+    +  ++   +
Sbjct: 101 LLVVQQTDAAVIADLMMGGDGTN----ADPSLSEIHLSAVQEAMNQMMGSAATSMSTVFN 156

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP-------- 202
              + SP   +  D+   +      + E +  ++  + I   + S+ + + P        
Sbjct: 157 KKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITFAKDLI 216

Query: 203 ----------------QETLLKTTLISLSSQNKSENQSEDL------------------- 227
                           Q +  +    +  +Q+    Q+                      
Sbjct: 217 AELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNVAPVEF 276

Query: 228 ---------IDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAI 276
                              +++ +   + L +T  ++K+V+ L  G +I           
Sbjct: 277 EAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVD 336

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 337 ILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370


>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
 gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
          Length = 279

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 16/248 (6%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
            S     V +  S+++      I  S  L+  + E ++G          N  L+  E   
Sbjct: 39  DSMTPPLVSATFSVNN-EMKIKILASAVLMSAIGEWMMG----EEEISKNSELNEDEMDA 93

Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
           AK  I  I +  +  +   +E         + +++  +       F      N+ I ++ 
Sbjct: 94  AKEAIQNIISAFSTTLGAQKEIPKMEFSLENCEFVADSLEL--GGFHKLYLYNVKIADLE 151

Query: 195 SSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARK-----TYQLNVNIDTRI 246
               L+      + L KT L  + + ++   Q    +              + + I  RI
Sbjct: 152 EKISLVFDEKIYKILTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRI 211

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
             KK  LKDV+T+ IG VI           +    K+I   E+  V  N+ ++IT+ I  
Sbjct: 212 GSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVVIVDGNFGVQITE-IGS 270

Query: 307 DQKSLKNF 314
            ++ L+  
Sbjct: 271 KKERLEQL 278


>gi|134298951|ref|YP_001112447.1| MCP methylation inhibitor CheC [Desulfotomaculum reducens MI-1]
 gi|134051651|gb|ABO49622.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
          Length = 333

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 93/289 (32%), Gaps = 28/289 (9%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +G +          + +   V I Y      +   +  SF   ++  +       +   
Sbjct: 41  EIGNICMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFKEGLNGFN 100

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +  +   +  + + ++G + +    +    ++ +E   +   + Q+    +  +     
Sbjct: 101 VLVINEEEIAIIADIMMGGNGQVTKPVM---ITEMELSASTEAMNQMIGSSATAMADLFG 157

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP-------QE 204
              + +P      +      +T   +++ V      +TI ++  +  + I        Q 
Sbjct: 158 IGIDIAPPKATMVEDLLNASHTPLPTDKPVVVARFEITIGDIIKTTFMQITNVDAARDQA 217

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ------------LNVNIDTRINLKKTT 252
             L     +  ++N  E  S++ +     +T              + V+++  +   + T
Sbjct: 218 NYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLGKIRCT 277

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
             D+  LK G  +      +    L   G  +   EL    +   I+I+
Sbjct: 278 AGDLAKLKKGDTLAIPFSSQ-QIKLLVGGIPVALGELQTHAEETKIKIS 325


>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
 gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
           12198]
          Length = 279

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 21/220 (9%)

Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ-------CIS--- 151
           +L   L + ++G   E+   + +  L  + K++       +S  LN          S   
Sbjct: 65  DLATALADTMVGGEGESKESVDDDDLDAI-KEINSNIFGALSTSLNSQKKLPKLSFSCKN 123

Query: 152 -TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
             +  +  +L DF  +     + NR+ + F+                    PQ   + + 
Sbjct: 124 VASITNEQDLSDFARVYDFAFSLNRIKSHFLLLCTKEFEENFSGKKEEASSPQTEEIDSA 183

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
                SQ + +N               + +N+  RI  K+  LKDV ++ IG VI     
Sbjct: 184 PGQNLSQEEMKNIGM---------LLDVKLNVKVRIGQKRMLLKDVTSMDIGSVIELNQL 234

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +  + K I   E+  V  N+ I++T+     Q+ 
Sbjct: 235 ANEPLEILIDDKVIAKGEVVIVDGNFGIQVTEIGTKRQRL 274


>gi|85707184|ref|ZP_01038271.1| possible flagellar switch protein FliM [Roseovarius sp. 217]
 gi|85668343|gb|EAQ23217.1| possible flagellar switch protein FliM [Roseovarius sp. 217]
          Length = 342

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/268 (11%), Positives = 78/268 (29%), Gaps = 14/268 (5%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
           S     +  L ++      L + ++         + +     +  +       +  +   
Sbjct: 31  SPAKALRLALARVADSLFGLGITVATVEQMRLPLAEVAQHVSDEGLLVHLDG-AAGTRGA 89

Query: 97  IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
           +      +  L+E     +         R+ +  +  +    I  + A  +     T E 
Sbjct: 90  LCLDPQFLAGLIEVQTTGAVR-PAVARPRAATRTDAAMVAPLIDAVMAEFDS--QMTAEV 146

Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVT----TINMNMTIENVASSFVLIIPQETLLKTTLI 212
              L   +    L ++   LS   +      + + + +   A +  L +    +      
Sbjct: 147 EGYLARGFSFGDLVEDMRALSLVLLAPDYDLLRLTVDLGPGAKTGHLDLLLPVVPLPVRA 206

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +       +  +     P  +      V +D  +   +  L+DV   K G ++P      
Sbjct: 207 APGVGALGDGSA-----PLDQVVRTAPVVLDAVMGRLRLPLRDVWAFKPGDLVPIPREAL 261

Query: 273 TCAILSA-NGKEIYSCELGRVGKNYTIR 299
               L    G  +   +LG++     +R
Sbjct: 262 GETQLVGTKGHIVAIAQLGQMNGWRALR 289


>gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL + +   +  +  TL+ +  L+ G              + ANGK I  CEL  + + 
Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGSQE 319


>gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           harveyi HY01]
 gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
           harveyi HY01]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL + +   +  +  TL+ +  L+ G              + ANGK I  CEL  + + 
Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGSQE 319


>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
 gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
          Length = 287

 Score = 46.2 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 20/226 (8%)

Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
           LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P L +
Sbjct: 70  LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKL-N 122

Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-----------TL 211
           F  I+           ++   +  +  +E +  S ++++  E   +            T 
Sbjct: 123 FTTINAEIAKEFPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKMHKEEKEETT 182

Query: 212 ISLSSQNKSENQSEDLIDPFARKTY-QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
              + + K+ + S + I+         + +N+  RI  KK  LKDVV++ IG V+     
Sbjct: 183 EGATEEVKAHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
                 +  + K I   E+  V  N+ I+ITD I   ++ L+   H
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287


>gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL + +   +  +  TL+ +  L+ G              + ANGK I  CEL  + + 
Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 305

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 306 LGVRVLELFGGSQE 319


>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 279

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 19/275 (6%)

Query: 49  IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
             +  +    ++S+   Q GK      S          S     S+     S  +   L 
Sbjct: 16  TIEGLLGQTPEVSHIEAQDGKS----DSINPPMAKIDISTDD-GSSLAFFISPKVATALA 70

Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
           + +LG   E+   +    L    K++A      IS  L       +E         +I++
Sbjct: 71  DMMLGGEGESKETMEADDLDAT-KEIASNIFGAISTSL----GGQKELPKLSFSISNINF 125

Query: 169 LKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
           +      L N     T + N+        F      E            ++ + N     
Sbjct: 126 IPDGDLGLGNYSGFYTFSFNIGSVQDYLYFGFSSAFENHFNPNANQALEESSTGNGEAQA 185

Query: 228 IDPFARKTY-------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            + + +  RI  KK  LKDV+ + IG V+           +  +
Sbjct: 186 KVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVD 245

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
            K I   E+  V  N+ I+IT+ I   +  L   +
Sbjct: 246 DKVIAKGEVVIVDGNFGIQITE-IAPKKDRLDQLM 279


>gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
 gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL + +   +  +  TL+ +  L+ G              + ANGK I  CEL  + + 
Sbjct: 247 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 306

Query: 296 YTIRITDRINFDQK 309
             +R+ +     Q+
Sbjct: 307 LGVRVLELFGGSQE 320


>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
           phosphatase fliY) (Flagellar motor switch protein fliY)
           [NC10 bacterium 'Dutch sediment']
          Length = 324

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 91/303 (30%), Gaps = 31/303 (10%)

Query: 25  LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-F 83
           L + +T+       G L  +   ++F       V + +        S ++       V  
Sbjct: 14  LAEVETVSSALERHGQLVFEASSQVFSVLCGRPVRLRFDRIVPVSPSTLLALLPGPCVGM 73

Query: 84  SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
           +  +         +    +  I L + +LG             LS            QI 
Sbjct: 74  AMQASQGLVGAEHLVWRADDAIGLAQLILGEEPT-----PGSELSADYLDALSEAANQIG 128

Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKK----NTNRLSNEFVTTINMNMTIENV-ASSFV 198
             L   +         +E        +        R           ++T E + +    
Sbjct: 129 GSLGTALRAALGKPVTVEAGTVTALTEAGVCLAVFREEASTPLLCVASLTREGLASGEVA 188

Query: 199 LII------------PQETLLKTTLISLSSQNKSENQ------SEDLIDPFARKTYQLNV 240
           LI+            P    L     ++S+ + S           + + P       L+V
Sbjct: 189 LIVSPSLLPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDV 248

Query: 241 NIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           N+   + L +T L  +D++ L  G ++    +      +  N K I   E+  + +N+ +
Sbjct: 249 NLQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDENFGV 308

Query: 299 RIT 301
           R+T
Sbjct: 309 RLT 311


>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
           95/1000]
 gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
           95/1000]
          Length = 348

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L     T+KD++ L  G +I           L  NGK I   E+  + +N
Sbjct: 269 MDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEN 328

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD I+   + 
Sbjct: 329 FGVRVTDIISPMDRL 343


>gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47]
          Length = 99

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           ++++K    S      +  K  ++   ++  +  KK  L+ ++ L  G ++ F       
Sbjct: 5   ATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDVHCDRP 64

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302
             L A G  I + E  ++G  + +R+ +
Sbjct: 65  LTLRAGGHPIATGETVKIGDKFGLRVRE 92


>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 386

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I                           +   ++  Q      P  R+  ++ V     
Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEVKQASF 287

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSIRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
 gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
           2916]
          Length = 386

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I                           +   ++  Q      P  R+  ++ V     
Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEVKQASF 287

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
 gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
 gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
           657]
          Length = 386

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I                           +   ++  Q      P  R+  ++ V     
Sbjct: 228 AIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEVKQASF 287

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|126176170|ref|YP_001052319.1| hypothetical protein Sbal_3982 [Shewanella baltica OS155]
 gi|125999375|gb|ABN63450.1| conserved hypothetical protein [Shewanella baltica OS155]
          Length = 293

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 18/196 (9%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            +  T      R+ S  E +LAK+ +  +   L      T      L   +         
Sbjct: 112 GNTSTPLSSPLRNPSQSEFRLAKKLLLSVVDELPNSTIDTNTLEVELIKGH--------- 162

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
             +        + N    ++    +       L +  L  L+ Q K    S DL    A 
Sbjct: 163 --MPLTVSAVWSFNFINGSLTPPMLFC-----LTEHLLGHLAEQPKKSEISADLPTKLAV 215

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               L + +   +      ++ +  LK G ++P     KT   LS     ++   +    
Sbjct: 216 WLKSLPIKMQLTLGQHSIPVQSLSQLKTGDILPINLYPKTL--LSIGNTTLFHASVHSHE 273

Query: 294 KNYTIRITDRINFDQK 309
                ++T  +  +++
Sbjct: 274 GQMVAKLTQDVYQNEE 289


>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
           Langeland]
 gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           Langeland]
 gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
           230613]
          Length = 386

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I                           +   ++  Q      P  R+  ++ V     
Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMIYEKPIEREAPKVEVKQASF 287

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 541

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 100/314 (31%), Gaps = 48/314 (15%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95
            +G +            +D  V+I+           +   + +  V          S   
Sbjct: 226 EIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVNVRYRTGLSGEN 285

Query: 96  FIGCSNNLVITLLENLLG--ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
            +         +   ++G             R LS V + + +  +   S  L +  S  
Sbjct: 286 VLIMGEQDAALIAAVMMGEPTDGPLGELDEIR-LSAVSEAMNQM-MGSSSTALAEMFSRE 343

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIP---------- 202
            + +P + ++ +    + +     ++ +  ++  M + ++  S  + +IP          
Sbjct: 344 VDITPPVTEYGNPAE-EADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPLKFAREMAGV 402

Query: 203 ---------------QET--LLKTTLISLSSQNKSENQS-EDLIDPFARK---------- 234
                          QET  +++  L ++       +   +D +   + +          
Sbjct: 403 LLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPESTLPEERGLQ 462

Query: 235 ---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
                 + V I   +  +K  LK+++  K G V+           + ANGK +   E+  
Sbjct: 463 LDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGKLVARGEVVH 522

Query: 292 VGKNYTIRITDRIN 305
             + + I+IT+ + 
Sbjct: 523 YNERFGIKITEIMQ 536


>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
 gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
           Okra]
          Length = 386

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I                           +   ++  Q      P  R+  ++ V     
Sbjct: 228 AIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEIVYEKPIEREAPKVEVKQASF 287

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
 gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
 gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
 gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
          Length = 377

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/334 (10%), Positives = 104/334 (31%), Gaps = 61/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  +    + SH+   F         +    +S N 
Sbjct: 41  EIGNISFGSSATALSTLLNQKVEITTPTVSVIEKSHLNDEFPHPYVSIGVSYTEGFSGNN 100

Query: 96  FIGCSNNLVITLLENLLGASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +         + + ++G       P L    LS V++ + +  +   +  ++   S   
Sbjct: 101 LLVIKQEDAAIIADLMMGGDGTNADPSLGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKI 159

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII------------- 201
           + SP   D  D+   +        + +  ++  + + ++  S ++ +             
Sbjct: 160 DISPPEVDLLDVKEGEGTEQIPKEDPLVKVSFRLKVGDLIDSHIMQLYPLTFAKDLIDEL 219

Query: 202 --------------------------PQETLLKTTLISLSSQNKSENQSEDLID------ 229
                                     P     +T     + + +   +  + +       
Sbjct: 220 TNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKVSEPVQVAPAEF 279

Query: 230 -----------PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAI 276
                              +++ +   + L +T  ++K+V+ L  G +I           
Sbjct: 280 QSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSIIELDKLAGEPVD 339

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 340 ILVNQRVVAKGEVVVIDENFGVRVTDILSQAERI 373


>gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
           aurantiaca DW4/3-1]
          Length = 379

 Score = 45.8 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 29/255 (11%)

Query: 20  RLTGK---LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
           RLT     LG++  + ++         + L +    ++  DV  +    ++         
Sbjct: 21  RLTRAHVVLGERPQVSRMGQQALQSICESLGR----ELGCDVSAASHVAEAVVVP--AKG 74

Query: 77  FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
              + VF    LS+   +  +     ++   LE L G      P    R     E  LA 
Sbjct: 75  LSLSAVFVFLELSATGGSAVLELEPPVLFAALERLAGGPAR--PGPMTRLTRLEEASLAY 132

Query: 137 RTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
             +A +         T  E             ++ +         +    + + +++   
Sbjct: 133 LVLAAL-----MAFRTQGELQRWWGPRLAGMTVNRMDALARLDGRKAHLGVELVLSVGQR 187

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
            +   L++P   L  T       ++ S           A +    ++     +  ++   
Sbjct: 188 TAGARLVLPAVVLESTCRKLPVQRDSSR----------APEILAASLGARCFLGCRQLLP 237

Query: 254 KDVVTLKIGQVIPFL 268
            ++ TL +G V+ F 
Sbjct: 238 SELETLAVGDVVVFE 252



 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V ++  +      L ++ TL+ GQ++P         +L    + +   EL  +      R
Sbjct: 314 VEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGAR 373

Query: 300 I 300
           I
Sbjct: 374 I 374


>gi|157959917|ref|YP_001499951.1| hypothetical protein Spea_0087 [Shewanella pealeana ATCC 700345]
 gi|157844917|gb|ABV85416.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
          Length = 293

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 19/178 (10%)

Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
            GA   T      RS S  E +L KR +      L           P  E   D   L+ 
Sbjct: 111 YGAFASTPKSPL-RSPSQSEFRLVKRLMIAAIKRL-----------PITEIDEDALELEL 158

Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
            +N    +      ++    +     +  +     L   +  L SQ +++     L +  
Sbjct: 159 LSNETPIKAPVCCELSFPAAHSGPPMLFFM--SEYLLGLMAELPSQYQADPA---LSEKL 213

Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           A +  Q+ + +   +  + T+L  +  L +G V+P      +   ++   + ++   +
Sbjct: 214 AHRLRQIPLRVLLELGHQSTSLTSLQNLAVGDVLPMNL--HSRCPVTVGKRPLFYATV 269


>gi|149916493|ref|ZP_01905010.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b]
 gi|149809595|gb|EDM69451.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b]
          Length = 342

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 53/207 (25%), Gaps = 16/207 (7%)

Query: 99  CSNNLVITLLEN-LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV----LNQCISTT 153
                +  ++E   +GA          RS++  +  +    +  I       L       
Sbjct: 86  LDAQFLAAVIEVQTMGAVQRGDA--PERSVTPTDAAMVAPLMDAILKGYDEYLTSGAEKV 143

Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
             S     D  +          +    +  I  ++       S  L++P+         +
Sbjct: 144 ARSDWRFGDMVEDARTLALALEMPEYDLFRITADLADGAKTGSLSLLLPRAPRRDPVTSA 203

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
                                     V +D  +      L  +  L  G  +P       
Sbjct: 204 RDRAFAGPT--------LEASALNAPVMLDAVLARLSMPLNKLCALTPGMQLPVPREALN 255

Query: 274 CAILSANGKEIYS-CELGRVGKNYTIR 299
            A L   G+ + +   LG++     +R
Sbjct: 256 KAELLGAGQHLVAPVRLGQLNGWRAVR 282


>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
 gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
          Length = 152

 Score = 45.8 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 3/142 (2%)

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
              +     +     +I    T+        L  P+   L          + +   ++ L
Sbjct: 10  DRSRRVRPSAAGPAPSIRGGGTLPPRTFLLTLT-PRA--LPPFPTGARMTDATRPLADRL 66

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
                R    + V +   +   + T++D++ L  G V+           +  NG  I   
Sbjct: 67  GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126

Query: 288 ELGRVGKNYTIRITDRINFDQK 309
           E+  VG+ + IR    I  +++
Sbjct: 127 EVVMVGERFGIRFGQIIEPEKR 148


>gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella
           chejuensis KCTC 2396]
 gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella
           chejuensis KCTC 2396]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           ++ ++NQ +S   ES     D  +++ L       S     +I         AS  +L  
Sbjct: 99  VARLVNQALSELAESW-GAADPVEMESLAYAQEYASGWIQVSI-----AWPSASIVLLWS 152

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P     K       +  +    +   ++   R   +L+  +  R+N  + T+ +V +L+ 
Sbjct: 153 P-----KVVEKHFPAGAEFNRGALKPLESLLRSCGELSAKLSVRLNSVELTINEVTSLQA 207

Query: 262 GQVIPFLHREKTCAILSANGKEI-YSCELGRVGKNYTIR 299
           G VI   H+    A++      + +   LG      +++
Sbjct: 208 GDVIKLDHKLTEPALVFTQDGALRFRASLGECEGRKSVK 246


>gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei DM98]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 84  ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 142

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 143 VTIRANGQPFGRGELIQVGEQLAVEVK 169


>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
           51449]
 gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 16/205 (7%)

Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE-DFY 164
            L + +LG   E   ++ +  L  + K+++      +S  LN      Q   P L     
Sbjct: 69  ALADMMLGGEGEVKSEMSDDDLDAI-KEISSNIFGAVSTSLNS-----QNELPKLNFTCS 122

Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE--TLLKTTLISLSSQNKSEN 222
           +I+++ +N +     F      N T++++ S+F ++  +    L +    S  +      
Sbjct: 123 NIEFITENMDLSR--FDKAYIFNFTLDSIQSNFTILANKSFVELFEGGNTSAQAAPAESA 180

Query: 223 QSEDLIDPFARK-----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
              +                + +N+  RI  K+  LKDV+ + IG VI           +
Sbjct: 181 AQTNPALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEI 240

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
             + K I   E+  V  N+ I+ITD
Sbjct: 241 LVDDKVIAKGEVVIVDGNFGIQITD 265


>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
 gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
          Length = 408

 Score = 45.4 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 71/197 (36%), Gaps = 4/197 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  +        +   F         +    +S + 
Sbjct: 44  EIGNISFGSSATALSTLLNQKVEITTPTVSVILKRKLQEEFPHPYVAIQVSYTEGFSGSN 103

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + +LG        L     LS V++ + +  +   +  ++   S   
Sbjct: 104 LLVIKQSDAAIIADLMLGGDGLNPADLLGEIQLSAVQEAMNQM-MGSAATSMSTIFSKRV 162

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLIS 213
           + SP   DF D+   +       ++ +  ++  + I + + SS + ++P E   +     
Sbjct: 163 DISPPSIDFLDVQQGEGTDRIPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRLVEEL 222

Query: 214 LSSQNKSENQSEDLIDP 230
           ++   ++EN + DL  P
Sbjct: 223 MNPGAQAENPAADLSKP 239



 Score = 40.0 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 63/193 (32%), Gaps = 14/193 (7%)

Query: 132 KKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
            + AKR + ++     Q  +   + S P+     +  + +     + +            
Sbjct: 212 LEFAKRLVEELMNPGAQAENPAADLSKPDPVQAQEPAFHQPPAEPVPDMAAAPPGYGQGT 271

Query: 191 ENVASSFVLII-PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ----------LN 239
              +        P        L +     +       +   F  +  Q          L+
Sbjct: 272 AQYSGMETQTQRPAAQAAPQHLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNLNMLLD 331

Query: 240 VNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + +   + L +T  ++KD++ L  G +I           +  N + I   E+  + +N+ 
Sbjct: 332 IPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVIEENFG 391

Query: 298 IRITDRINFDQKS 310
           +R+TD I+   + 
Sbjct: 392 VRVTDIISQSDRI 404


>gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei
           BCC215]
          Length = 335

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 237 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 295

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 296 VTIRANGQPFGRGELIQVGEQLAVEVK 322


>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 7/188 (3%)

Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF---YDIDYLKKNTNRLSNEFVTTI 184
           S + + +    +  I ++L    +    +   +E+      +   K        +  T I
Sbjct: 209 SEIMQIIPMEAVENIMSILLGSTAEESSAEAVMEEPLVGMPLPETKAAAVAAPRQAETAI 268

Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
           +     E +     +  P+E   +        Q     +S  L  P       ++V +D 
Sbjct: 269 SPPPQ-EPIYGQAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLI-MDVPLDV 326

Query: 245 RINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            + L KT  T+ +++ L  G +I           L  NGK I   E+  + +NY IRIT 
Sbjct: 327 SVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITT 386

Query: 303 RINFDQKS 310
            I+   + 
Sbjct: 387 IISPIDRM 394


>gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
 gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T++ +    +G V+P        
Sbjct: 233 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAP-GE 291

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 292 VTIRANGRPFGRGELIQVGEQLAVEVK 318


>gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
 gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 305]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 233 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 291

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 292 VTIRANGQPFGRGELIQVGEQLAVEVK 318


>gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei B7210]
 gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
 gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei S13]
          Length = 327

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 229 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 287

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 288 VTIRANGQPFGRGELIQVGEQLAVEVK 314


>gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           23344]
 gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia mallei GB8 horse 4]
 gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           10399]
 gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
 gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
 gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           23344]
 gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
 gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
 gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
           10399]
 gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia mallei GB8 horse 4]
          Length = 327

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T++ +    +G V+P        
Sbjct: 229 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAP-GE 287

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 288 VTIRANGRPFGRGELIQVGEQLAVEVK 314


>gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 14]
          Length = 213

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S + S ++      P A     L V ++  ++ ++ T+  +     G V+P         
Sbjct: 116 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEV 174

Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301
            + ANG+     EL +VG+   + + 
Sbjct: 175 TIRANGQPFGRGELIQVGEQLAVEVK 200


>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
          Length = 164

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
                   Q   +  +E  I     +   + +N++  +      +++++ L  G V+   
Sbjct: 51  PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
                   +  NGK I   EL  VG+ + +RIT+  + ++KS+
Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERKSV 153


>gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
 gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 668]
          Length = 323

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 225 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 283

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 284 VTIRANGQPFGRGELIQVGEQLAVEVK 310


>gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
 gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106a]
 gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pasteur 52237]
 gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1106b]
          Length = 323

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 225 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 283

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 284 VTIRANGQPFGRGELIQVGEQLAVEVK 310


>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola sp. JR]
 gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermincola potens JR]
          Length = 412

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K T+++++ L  G V+           L  NGK +   E+  + +
Sbjct: 333 IMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAKGEVVVIDE 392

Query: 295 NYTIRITDRINF 306
           N+ IRITD ++ 
Sbjct: 393 NFGIRITDIVSP 404


>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
 gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
          Length = 171

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
            +S ++     +   D  +        ++V     +   +  + D++ L IG  +    R
Sbjct: 40  DVSPAASRSPVSPKRDATNSLWSIPLDVDV----VLGHARLPVSDLMNLSIGDTLSLDRR 95

Query: 271 EKTCAILSANGKEIYS---CELGRVGKNYTIRITD 302
                 + ANG  I     C +   G+ + +R+T 
Sbjct: 96  IGDPVEIVANGTTIAWGQLCAVDESGERFGVRLTK 130


>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 104

 Score = 45.0 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
           +  ++L          + V     +   + T+ +V+ L+ G +I              NG
Sbjct: 8   DPKKELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNG 67

Query: 282 KEIYSCELGRVGKNYTIRITDRINFD 307
           + +   E+    KN  IRI + ++  
Sbjct: 68  RILGKGEVMVYEKNLAIRINEVLDSS 93


>gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 322

 Score = 45.0 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYSRVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 91]
          Length = 233

 Score = 45.0 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 135 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 193

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 194 VTIRANGQPFGRGELIQVGEQLAVEVK 220


>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 126

 Score = 45.0 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +V ++  + L +   +L++++ +  G V+           L  NG+ +   E+  +G+N
Sbjct: 50  ADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGEN 109

Query: 296 YTIRITDRINFD 307
           Y IRIT+ IN +
Sbjct: 110 YGIRITELINPE 121


>gi|260427005|ref|ZP_05780984.1| surface presentation of antigens protein [Citreicella sp. SE45]
 gi|260421497|gb|EEX14748.1| surface presentation of antigens protein [Citreicella sp. SE45]
          Length = 355

 Score = 45.0 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 59/189 (31%), Gaps = 13/189 (6%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS----TTQESSPNLEDFYDIDYLKKNT 173
           T   +  R ++  +  +    +      L + +       Q +        +        
Sbjct: 81  TQMPVEERPITQTDAAMMAPLVDGTLDRLERYLEGHPLRPQFAGFRFGAMVEDARTAGLL 140

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
              +      +++++ +     + +L++P            + +  +E+       P  R
Sbjct: 141 LDAAGYRAFNVSVDLALGRRKGTILLVLP--------DRPDAGKADAEDGDAATPGPHER 192

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRV 292
           K   L V +D  +      L     L+ G +IP           ++  G  +    LG++
Sbjct: 193 KMKLLPVRMDAVLCSLTIPLSAAQRLRAGDLIPLPPEALDSVEFVAGAGPAVAGGRLGQM 252

Query: 293 GKNYTIRIT 301
                +R++
Sbjct: 253 NGMRAVRLS 261


>gi|56695927|ref|YP_166278.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3]
 gi|56677664|gb|AAV94330.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3]
          Length = 388

 Score = 45.0 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 63/196 (32%), Gaps = 21/196 (10%)

Query: 124 NRSLSTVEKKLAKRTIA--------QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
            R+ +  +  +    I          +   L++   T  E     E    +  L +    
Sbjct: 114 ERAFTGTDAAMVAPLIDALLPRARDMVDQPLDRVCLTGYEFCARAESRRALLLLLEYDRY 173

Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
                V  +   +          LI+P     +       ++  +  Q   L   F    
Sbjct: 174 R----VFDLTAEIAGGKAQGQITLILPD----RPEAALEGAEGAAAPQGLHLDAAFG--- 222

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
             +  ++D  I+  +  L     ++ G ++P    +     I++  G+++    LG+   
Sbjct: 223 -VVRADLDAVISRIRLPLAAFAGMQPGDLLPLVGLKLDRTEIVTIEGRQVALARLGQCRG 281

Query: 295 NYTIRITDRINFDQKS 310
              +R+ +++   ++ 
Sbjct: 282 MRAVRLNEKLPDPERI 297


>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
 gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
          Length = 329

 Score = 45.0 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 18  LARLTGKLGDKKT--------IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
           +  L G   + K         I +  S L  L    + ++ K    L+V   +      +
Sbjct: 11  IDSLLGGNAEDKQKDNTYGDAINENVSKLFDLLNSSIEEVTKTAFSLEVVSKFIDLNIIQ 70

Query: 70  FSHIIHSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
            + I  SF    V +   +    +S F +  +      L + +L    E   +L +  L 
Sbjct: 71  KNEI--SFDGKIVINVDVTTGEKNSKFVVLINKKFASILSDLMLMGPGEAKEELESEDLD 128

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY---------LKKNTNRLSNE 179
            + K+L  +    +S  + + IS              ++                 + N+
Sbjct: 129 AL-KELFSQIFGHLSTQVKEAISPFISFEVKEATKEPLEIDSDKLYKSQYDVAIPNIEND 187

Query: 180 FVTTINMNMTIENVASSFVLIIPQETLL--------KTTLISLSSQNKSENQSEDLIDPF 231
            +  I+  + ++ +   F    PQE  +        K     L  +   +     L  P 
Sbjct: 188 LIDIISPKIELDEI---FKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATLEAPK 244

Query: 232 ARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                  +++++  RI  K   +KD++ LK G +I      +    +  NG
Sbjct: 245 NLNLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295


>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 93/289 (32%), Gaps = 24/289 (8%)

Query: 40  YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
                 L  +  +   + ++   +S     F  +I +       S       S       
Sbjct: 10  QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISAPYARVKISAIEKEESSIELLAPV 68

Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
              LV  L + +LG    +  ++ N  L    K++A      I+  L       QE  P 
Sbjct: 69  --VLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120

Query: 160 LEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLI-------IPQETLLKTTL 211
           L        + K   +  +       +  M     +   +L          +    +   
Sbjct: 121 LNFTTINAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTTAFEHQFEKTHQEEKEE 180

Query: 212 ISLSSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
              ++Q+ +E            +         + +N+  RI  KK  LKDVV++ IG V+
Sbjct: 181 KEETTQSTAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 240

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
                      +  + K I   E+  V  N+ I+ITD I   ++ L+  
Sbjct: 241 ELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 288


>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
 gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
           profundicola AmH]
          Length = 103

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V  ++ +     TL++++ L+ G VI     E   A +  NG+ I   E+    K
Sbjct: 21  LLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYEK 80

Query: 295 NYTIRITDRINFDQ 308
           N  IR+ + ++ +Q
Sbjct: 81  NLAIRLNEVLDANQ 94


>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 111

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 38/101 (37%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           +K    +  ++ +  +   +L          + V   + +   + ++ +++ LK G +I 
Sbjct: 1   MKKRRHTYGAKEEIFDSESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIID 60

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                        NG+ +   E+    KN  IRI + ++  
Sbjct: 61  LKKPAGESVETYVNGRILGRGEVMVYEKNLAIRINEVLDSS 101


>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 173

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   I  K   +++++ L    VI           L  NG  +   EL +V  
Sbjct: 89  LLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD 148

Query: 295 NYTIRITDRINFDQK 309
           N+ I+IT+ +  +++
Sbjct: 149 NFAIKITEILTKEER 163


>gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 322

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 7894]
          Length = 264

 Score = 44.6 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 166 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 224

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 225 VTIRANGQPFGRGELIQVGEQLAVEVK 251


>gi|153847524|ref|ZP_01993940.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149744726|gb|EDM56194.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 237

 Score = 44.6 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%)

Query: 114 ASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
              +T+ +L +R      E+ +A  T + +   L + IS        +      D  +  
Sbjct: 6   GDTQTLVKLADRFYGANTERSVATLTASDLR--LQERISRI-----IIGWLAPQDMWEAC 58

Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
                      + +N+T E    S  L +    L++T +  L  Q+       DL +PF 
Sbjct: 59  EYEAPRGIGLCVQLNITFEGYQGSMYLKL-DTHLIQTLIEQLELQS-----DVDLYEPFC 112

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           R      V ++  ++ K   L DVV+LK   ++P 
Sbjct: 113 RSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPI 147


>gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10229]
 gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10247]
 gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei
           2002721280]
 gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10247]
 gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei
           2002721280]
 gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC
           10229]
          Length = 335

 Score = 44.6 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S + S ++      P A     L V ++  ++ ++ T++ +    +G V+P         
Sbjct: 238 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAP-GEV 296

Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301
            + ANG+     EL +VG+   + + 
Sbjct: 297 TIRANGRPFGRGELIQVGEQLAVEVK 322


>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
 gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
           str. 1873]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 106/331 (32%), Gaps = 61/331 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            +   V+I+     S     + ++F+           S      
Sbjct: 61  EIGNISMGSASTALSTIIGNVVNITTPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGN 120

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         +   ++G       +     L+ +E+      + Q+    +  +    S
Sbjct: 121 LLVMKIPDAAVIANLMMGGDGRIEEKSE---LTEIEESAVSEAMNQMIGSAATSMATMFS 177

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP +   +    +        N+ +  ++  +TI ++  S+ + I P +T  K  
Sbjct: 178 REVNISPPVYKIWKDTSMPLCETIKENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIV 237

Query: 211 LISLSSQNKSE--NQSEDLIDPFARKTYQ------------------------------- 237
            I +  + K E   QS +      +   Q                               
Sbjct: 238 SIMMGQEEKGEAVEQSSNKTQQINKMQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFA 297

Query: 238 -----------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILS 278
                            L+V ++  + L KT  ++KD++ L  G +I      +    + 
Sbjct: 298 PLQESNINGAPQNIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIY 357

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            NGK+I   E+  V +N+ +RI + ++ +++
Sbjct: 358 VNGKKIAYGEVVVVDENFGVRIVNIVSGEER 388


>gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
 gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei Pakistan 9]
          Length = 327

 Score = 44.6 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S + S ++      P A     L V ++  ++ ++ T+  +     G V+P         
Sbjct: 230 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEV 288

Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301
            + ANG+     EL +VG+   + + 
Sbjct: 289 TIRANGQPFGRGELIQVGEQLAVEVK 314


>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 94/310 (30%), Gaps = 58/310 (18%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           V I+        +  +   F   +V            +  +      V+ + + ++G   
Sbjct: 63  VTITTPKVSVLSWEELKKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEG 122

Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
           +    ++ +  LS + + + +  I   +  L+  ++ T   SP      D          
Sbjct: 123 KVEDGEITDLHLSAIGEAMNQM-IGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDIS 181

Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIP--------QETL-------------------- 206
                V  I   M +  +  S  + ++P        Q  L                    
Sbjct: 182 FPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVI 241

Query: 207 ------------------------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
                                    K  +  +  Q+  E+ S             L+V +
Sbjct: 242 IENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPL 301

Query: 243 DTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              + L KT   +KD++ L  G +I           + ANGK I   E+  + +N+ +RI
Sbjct: 302 TITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRI 361

Query: 301 TDRINFDQKS 310
            D ++  ++ 
Sbjct: 362 IDIVHQSKRI 371


>gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 386

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + +   +   K TLKDV+ L+ G VI           +  N + I   E+  +
Sbjct: 306 ENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVVVI 365

Query: 293 GKNYTIRITDRINFDQKS 310
            +N+ IRIT+ I+  ++ 
Sbjct: 366 DENFGIRITEIISPRERL 383


>gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
 gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
          Length = 254

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 71  SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
              + +     V +  S  +                + E L GA   T            
Sbjct: 33  GDPLPAAGAPAVIATLSAETSMQVMLAVSDP-----IAEALEGAEGMTPV---------- 77

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
            + L     A  + +    +  T +++   E     D+        ++         +  
Sbjct: 78  -QALVPALEAAAATLATGVLENTSQANAA-EQLAAGDWTSATLEAENSVEGWLSVREIAA 135

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRIN 247
               ++     P            S+     +Q+    +  A      Y + + +   I 
Sbjct: 136 GAAGAAGAAGAP-------KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIG 188

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
             K  + DV+ L  G VI       + A +  NG+ I   E+  V + Y IRIT+ ++
Sbjct: 189 RTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 246


>gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei
           9]
          Length = 294

 Score = 44.6 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           S + S ++      P A     L V ++  ++ ++ T+  +     G V+P         
Sbjct: 197 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEV 255

Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301
            + ANG+     EL +VG+   + + 
Sbjct: 256 TIRANGQPFGRGELIQVGEQLAVEVK 281


>gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
 gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
 gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
           Hall]
 gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
           Kyoto]
          Length = 386

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 100/334 (29%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARK----------- 234
            I                           +   ++  Q      P  R+           
Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPTKAVEAPKQEIVYEKPIEREAPKVEIKQASF 287

Query: 235 ------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                + + I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ
 gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         +      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
 gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
           SRS30216]
          Length = 249

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 8/169 (4%)

Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
           +  +   L   +    + +       D           ++  V  I+       +    +
Sbjct: 86  VDALRPALETVVHALGQCTLEAGVEGDPAQALSQI---ADGAVAVIDAGGETLALIGLTL 142

Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
              P  T     + S +                 R   Q++V ++  +     T++D++ 
Sbjct: 143 TAQPDTT--PAPMPSFAPAGTPAPAGPRRTMDLLRDV-QMDVTVE--LGRTSMTVQDLLA 197

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           L  G V+       + A +  NG+ I   E+  V ++Y IRIT+ +  +
Sbjct: 198 LTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITEIVTPE 246


>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
 gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
           [Clostridium novyi NT]
          Length = 396

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 109/334 (32%), Gaps = 64/334 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            +   V+I+    +      +  +F+           S      
Sbjct: 60  EIGNISMGSASTALSTIIASAVNITTPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGN 119

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         +   ++G   +   +     L+ +E+      + Q+    +  +     
Sbjct: 120 LLVMKIPDAAVIANLMMGGDGKIEEKSE---LTEIEESAVSEAMNQMIGSAATSMATMFG 176

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP +   +    L  + +    E +  ++  +TI ++  S+ + I+P +T  K  
Sbjct: 177 REVNISPPISKIWKDAALPLSESISEEEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIV 236

Query: 211 LISLSSQNKSE-----------------NQSEDLIDPFARKTY----------------- 236
            I +  + +                   N++   IDP   +TY                 
Sbjct: 237 SIMMGEEEEDMQLNPKVEERPVNIKSDLNKAPQQIDPKPAETYTQPQNSVPQSQVSVQRA 296

Query: 237 -------------------QLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCA 275
                               L+V ++  + L KT  ++K+V+ L  G +I      +   
Sbjct: 297 NFAPLDQNPISGVPQNIDLILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPV 356

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            +  NGK+I   E+  V +N+ +RI   ++ +++
Sbjct: 357 EIYVNGKKIAYGEVVVVDENFGVRIVSIVSGEER 390


>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Caldicellulosiruptor owensensis OL]
          Length = 376

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 97/351 (27%), Gaps = 71/351 (20%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85
           DK  + +I +         L  +  +K+++   +        K+  +   F         
Sbjct: 30  DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSVLKWDELPKEFPVPYVAIKV 85

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRT---IA 140
                      +      V  + + ++G +   E   QL    LS +++ + +       
Sbjct: 86  VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEQLTELQLSAIQEAMNQMVGSAST 145

Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
            +S++LN  I      +  ++   + + +     R          M +     +    LI
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205

Query: 201 -----------------------------------------------------IPQETLL 207
                                                                +PQ    
Sbjct: 206 PVDFAKQLVDAMLRNTLGTSDGQAEVAAQAYHEPVKEEALKQPVSQPTNKQKTLPQSHTQ 265

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKT--TLKDVVTL 259
                             +  D    +         L+V ++  + L +T   +++++  
Sbjct: 266 PPKKEQPQKVYNVSPVQFESFDEEEERKYPENIELILDVPLEITVELGRTQKLVREILEF 325

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I           +  NGK I   E+  + +N+ +RITD +N   + 
Sbjct: 326 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376


>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
 gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
          Length = 432

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 12/201 (5%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  VDI+  +        +   F              +  + 
Sbjct: 50  EIGNISFGSSATALSTLLNQKVDITTPAVSVVLRQKLAEEFPHPYVAIQVNYTEGFFGSN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + +LG       +L     LS V++ + +  +   +  ++       
Sbjct: 110 LLVIQQSDAAIIADLMLGGDGTNPAELMGEIQLSAVQEAMNQM-MGSAATSMSTIFGKKV 168

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP-------QETL 206
           + SP   D  D+   +      +++ +  I+  + I + + S+ + ++P          L
Sbjct: 169 DISPPAIDILDLPQGEGADRVPADDMLIRISFRLKIGSLIDSNIMQLLPLEFGKSLVNEL 228

Query: 207 LKT-TLISLSSQNKSENQSED 226
           L     +   S    ENQ+  
Sbjct: 229 LNPGQDLPADSAVSGENQAAQ 249



 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ +   + L +T  ++K+++ L  G +I           +  N + I   E+  + +N
Sbjct: 354 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGEVVVIDEN 413

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD I+   + 
Sbjct: 414 FGVRVTDIISQSDRI 428


>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 128

 Score = 44.3 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +     T+++V+ L  G +I           +S N ++    E+  +  
Sbjct: 44  IEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVIND 103

Query: 295 NYTIRIT---DRINFDQK 309
           NY IRIT      +F+++
Sbjct: 104 NYGIRITSVFKPHSFEKE 121


>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 101

 Score = 44.3 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V   + +     T+K+++ L++G VI           L  N +     E+   
Sbjct: 16  DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVMVY 75

Query: 293 GKNYTIRITDRINFD---QKSLKNFL 315
            KN  IRI + ++     Q   +  L
Sbjct: 76  EKNLAIRINEILDSKSVIQYFKRELL 101


>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
 gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
          Length = 248

 Score = 44.3 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 S+     +Q+    +  A      Y + + +   I   K  + DV+ L  G VI
Sbjct: 141 PKKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 200

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  + A +  NG+ I   E+  V + Y IRIT+ ++
Sbjct: 201 ELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 240


>gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 322

 Score = 44.3 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    I ++   +     FV+ +P      +L T    +      ++    L    P  +
Sbjct: 179 EIGMGIRIHCFGDVRIGCFVIQLPGRIYARVLLTEDNMMKFDELVQDIETLLAQEGPILK 238

Query: 234 KTYQLNVNID-------TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  NG+ I  
Sbjct: 239 SDIASSVELEQLPQSVLFEIGRASVEIGQLRQLKAGDVLPVGGCFAPEVTIRLNGRVIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 194

 Score = 44.3 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +  K  ++++++ L    VI           L  NG  +   EL +V  
Sbjct: 110 LLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGELYQVDD 169

Query: 295 NYTIRITDRINFDQK 309
           N+ I+IT+ +  +++
Sbjct: 170 NFAIKITEILTKEER 184


>gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 322

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|255022968|ref|ZP_05294954.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
           J1-208]
          Length = 115

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 40/103 (38%)

Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
             + +P  ++ +      +    + ++  +      ++ +Q+      R+   KTT K++
Sbjct: 1   MRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKEL 60

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             L++G V+      +         K  + C +G+ G    ++
Sbjct: 61  NKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 103


>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
 gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
           17241]
          Length = 446

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTL 259
           PQ    K   +  +   +   Q  D     A     + V++D  + + +T   +KD++  
Sbjct: 328 PQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDF 387

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
             G VI    +      +  NG+ +   ++  +  N+ +RIT+ +   +
Sbjct: 388 GQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDDNFGVRITEIVGTKE 436


>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 101

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V   + +     T+K+++ L++G VI           L  N +     E+   
Sbjct: 16  DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVVVY 75

Query: 293 GKNYTIRITDRINFD---QKSLKNFL 315
            KN  IRI + ++     Q   +  L
Sbjct: 76  EKNLAIRINEILDSKSVIQYFKRELL 101


>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
 gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
          Length = 124

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 31/77 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   + + +   +   + T+K+++ LK G VI           L  N   +   E+  +
Sbjct: 45  KRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVI 104

Query: 293 GKNYTIRITDRINFDQK 309
              + +RI      +++
Sbjct: 105 NDAFGVRINSLAAVEEE 121


>gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 322

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         +      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|83717892|ref|YP_438371.1| hypothetical protein BTH_II0169 [Burkholderia thailandensis E264]
 gi|83651717|gb|ABC35781.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 55/180 (30%), Gaps = 16/180 (8%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R   +++  + + I        +     +        +    
Sbjct: 149 PPIPE----TTTERRLAERLAGELARTVARAI------PFDAPPDDETPPPPDGGHARRA 198

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                  +              +      +      SS +++ +   +   P    + +L
Sbjct: 199 HLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVRRERSLP----STRL 254

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +  ++        DV+ L+ G V+P        A +  +  ++++  +        +
Sbjct: 255 RLKLTAQLMEMSVPFGDVLRLRPGTVLPVRL--HAPARVMTHDAQLFTASIAEHNGKLCL 312


>gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
 gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 576]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 225 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 283

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 284 VTIRANGRPFGRGELIQVGEQLAVEVK 310


>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 80/249 (32%), Gaps = 24/249 (9%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++    +      +  L+ +E    +
Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN-MNMTIE 191
             + Q+    +  +++ + T  + SP   +F +        N    + V  I  + +   
Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFPLEVEGL 373

Query: 192 NVASSFVLIIPQET------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN------ 239
                + +  P         +L      ++++  ++    ++  P   K           
Sbjct: 374 LKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSEMEAILE 433

Query: 240 ---VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
              V ++      K  L+  ++     VI           L  NG  I    L RV  ++
Sbjct: 434 AIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVNDHF 493

Query: 297 TIRITDRIN 305
            I++T+ + 
Sbjct: 494 GIQMTELVR 502


>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
 gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
           BI429]
          Length = 370

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ ++  + L K   TLK V+ L +G +I           +  NGK I   E+  + +N
Sbjct: 292 LDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDEN 351

Query: 296 YTIRITDRINFDQKSL 311
           + +RIT+ ++  ++  
Sbjct: 352 FGVRITEIVSPQERFY 367


>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
 gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
           MCS10]
          Length = 99

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
           +++++ +    +++    +   + V I   +   K  ++  + +  G VIP    E    
Sbjct: 2   AKHQARDDDPQVLECDVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQV 61

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            + AN   I   ++   G    + IT   + ++
Sbjct: 62  WILANNHPIARGDVVIQGDRIAVSITGPADANE 94


>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 95/310 (30%), Gaps = 58/310 (18%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           V I+        +  +   F   ++            +  +      V+ + + ++G   
Sbjct: 63  VTITTPKVSVLSWEELKKEFNIPYIGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEG 122

Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
           +    ++ +  LS + + + +  I   +  L+  ++ T   SP      D          
Sbjct: 123 KVEDGEITDLHLSAIGEAMNQM-IGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDIS 181

Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIP--------QETLLK--TTLISLSSQNKSENQS 224
                V  I   M +  +  S  + ++P        Q  L K       ++ Q +S N  
Sbjct: 182 FPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVI 241

Query: 225 EDLIDPFARK------------------------------------------TYQLNVNI 242
            +  +                                                  L+V +
Sbjct: 242 IENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPL 301

Query: 243 DTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              + L KT   +KD++ L  G +I           + ANGK I   E+  + +N+ +RI
Sbjct: 302 TITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRI 361

Query: 301 TDRINFDQKS 310
            D ++  ++ 
Sbjct: 362 IDIVHQSKRI 371


>gi|167614817|ref|ZP_02383452.1| hypothetical protein BthaB_00940 [Burkholderia thailandensis Bt4]
 gi|257141402|ref|ZP_05589664.1| hypothetical protein BthaA_19664 [Burkholderia thailandensis E264]
          Length = 298

 Score = 44.3 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 55/180 (30%), Gaps = 16/180 (8%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R   +++  + + I        +     +        +    
Sbjct: 128 PPIPE----TTTERRLAERLAGELARTVARAI------PFDAPPDDETPPPPDGGHARRA 177

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                  +              +      +      SS +++ +   +   P    + +L
Sbjct: 178 HLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVRRERSLP----STRL 233

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +  ++        DV+ L+ G V+P        A +  +  ++++  +        +
Sbjct: 234 RLKLTAQLMEMSVPFGDVLRLRPGTVLPVRL--HAPARVMTHDAQLFTASIAEHNGKLCL 291


>gi|167576642|ref|ZP_02369516.1| hypothetical protein BthaT_00820 [Burkholderia thailandensis TXDOH]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 54/180 (30%), Gaps = 17/180 (9%)

Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
            P       +T E++LA+R   +++  + + I       P               +    
Sbjct: 128 PPIPE----TTTERRLAERLAGELARTVARAI-------PFDARPDGETPPPDGGHARRT 176

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                  +              +      +      SS +++ +   +   P    + +L
Sbjct: 177 HLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVRRERSLP----STRL 232

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            + +  ++        DV+ L+ G V+P        A +  +  ++++  +        +
Sbjct: 233 RLKLTAQLMEMSVPFGDVLRLRPGTVLPVRL--HAPARVMTHDAQLFTASIAEHNGKLCL 290


>gi|283784012|ref|YP_003363877.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
 gi|282947466|emb|CBG87013.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
           ICC168]
          Length = 288

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 72/238 (30%), Gaps = 45/238 (18%)

Query: 93  SNFFIGCSNNLVITLLENLLG---------ASHETIPQLYNRSLSTVEKKLAKRTIAQ-- 141
            +       +L++TLL N  G         +      +   R  S +   +      +  
Sbjct: 76  GHLAFDIDRSLLLTLLGNFYGLDASLTEINSQDNLPTKTETRLKSRLAMDIGALIFNKNT 135

Query: 142 --ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             +   L    ST Q        F   D                    + +++  + ++L
Sbjct: 136 SGVPLALKLDSSTVQTHWAYQLTFVLGDNEDGG-------------FRILLDDAHTDYIL 182

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
            + + +       +      +  + + + +       ++ V     I     ++ D+ T+
Sbjct: 183 NLIRRSEHNQGKPAADKAAVAVEKKKLVKEIIHTLPLKMQVK----IAELPLSVADLATI 238

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
           + G ++PF   +      S    E+++           + + D+   D+  L   + K
Sbjct: 239 RPGDILPFTLPDSFPV--SIGKSELFT----------ALIVEDK---DKLFLSELMSK 281


>gi|91795009|ref|YP_564660.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217]
 gi|91717011|gb|ABE56937.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217]
          Length = 293

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 18/196 (9%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            S +       R  S  E +L KR    +  VL             +E   +   ++ + 
Sbjct: 112 GSQKNPLSSPLRQPSQSEFRLIKRLFINVFEVLP--FEELDLEELEIELVKNHATIEAD- 168

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
                  V  +         A    +     +LL       + +      S DL    A 
Sbjct: 169 ------AVWALEFTQGSLAPALHIYMA---SSLLGLVQDMPNQK----PISTDLPTKLAN 215

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
              Q+ V +   +  +   +  +  +K G ++P     K+  +L+   K ++S  +    
Sbjct: 216 WLTQMPVKLRLTLGHQDIPVDSIDQMKAGDILPINLYPKS--VLAVGTKALFSATVHSHD 273

Query: 294 KNYTIRITDRINFDQK 309
                ++T   N  + 
Sbjct: 274 GQMLAKLTQDTNHYED 289


>gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 216

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 73  EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 132

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         +      +  +  LK G V+P          +  N + I  
Sbjct: 133 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 192

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 193 GELIACGNEFMVRIT 207


>gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P ++
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         +      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 95

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
           +ID  +  K   +++++  + G ++ F            NGK +   E+  + + + +RI
Sbjct: 17  DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDERFAVRI 76

Query: 301 TDRINFDQ--KSLKNFLHK 317
           T+ +  +   +  KN +++
Sbjct: 77  TEILEKEDLTEMYKNGMYR 95


>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
 gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
           51449]
          Length = 117

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           E++L    I  + + +     ED++  +      +    +  +   K  L +++  + G 
Sbjct: 4   ESILDKQRIHSAKEIELATYLEDMMKNY-TGLLDMEALFNAELGSTKIPLGEILRFEKGS 62

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +I           +  NG+ I   E+    +N  IRI + ++ +
Sbjct: 63  IIDLGKPAGESVEIFINGRVIGKGEVMVYERNLAIRINEILDSN 106


>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
 gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
           10542]
          Length = 247

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            Y + + +   I   K  ++ V+ L  G VI       + A L  NG+ I   E+  + +
Sbjct: 171 LYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVVVIDE 230

Query: 295 NYTIRITDRIN 305
           +Y +RIT+ ++
Sbjct: 231 DYGLRITEIVD 241


>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
           065]
          Length = 386

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + +SF+  N        S      
Sbjct: 50  EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    +   ++G +     ++    LS +E       + Q+    +  +    +
Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEVKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP L   +             +E V  ++ ++ I  +  SS + ++P +T  K  
Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227

Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240
            I                           +   ++  Q      P  R+  ++ V     
Sbjct: 228 AIMMGEESMDEPSVENNSTQASTVEEKKPAKVVEAPKQEMVYEKPIEREAPKVEVKQASF 287

Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
                                    I   +   K  +KD++ L  G +I      +    
Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +  NGK++   E+  V +N+ +RIT  ++  ++ 
Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381


>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
 gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
          Length = 284

 Score = 43.9 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 28/258 (10%)

Query: 75  HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH-----------ETIPQLY 123
            S K        +  +  +N  +  S  +   L + +LG              +   ++ 
Sbjct: 38  ESIKAPIARIDIATDN-DANLALFISPKVATALADMMLGGEGTAKDTMDNDDLDATKEIT 96

Query: 124 NRSLSTVEKKL-AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE--F 180
           +     +   L A++ + ++S  L      T++S   LE+F        N   + +   F
Sbjct: 97  SNIFGAISTSLGAQKELPKLSFTLKNIQFITEDSELGLENFSGFYTFAFNLGSIQDFLYF 156

Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQ 237
             + +   +     +                +  ++Q ++E +  +L +   +       
Sbjct: 157 AFSSSFEKSFNPNTTEDS---------DNVALDANTQTEAEEEKFELNNAGLKNIAMLLD 207

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + +  RI  KK  LKDV+ + IG V+           +  + K I   E+  V  N+ 
Sbjct: 208 VRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVDGNFG 267

Query: 298 IRITDRINFDQKSLKNFL 315
           I+IT+ I   +  ++  +
Sbjct: 268 IQITE-IAPKKDRIEQLM 284


>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
           DSM 574]
          Length = 131

 Score = 43.9 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 5/103 (4%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
            T+ K     L S       S  L          + + I   +      L++V+ L +G 
Sbjct: 23  ATVKKVRFPPLDSFRPERTISTSLS-----HLADVQITISAELGETTLKLREVLNLDVGS 77

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
           VI           +  N ++    E+  V  ++ +RI   I  
Sbjct: 78  VIDLNKSAGDAINIYFNDRKAAKGEVIVVNDSFAVRINSIIPP 120


>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
          Length = 125

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            Q+ V +   +   + +L +++ ++ G VI           +  NG+ +   E+  V   
Sbjct: 47  RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGEPLDVRVNGRLLAKGEVVVVNGK 106

Query: 296 YTIRITDRINFD 307
           Y +R+ D I+ +
Sbjct: 107 YGLRLVDVIDTN 118


>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
 gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + ++I   +   K  +K+++ L  G +I      +    +  NGK +   E+  + +
Sbjct: 335 IMDVPLDISVVLGRTKLNIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDE 394

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RITD +N  +K 
Sbjct: 395 NFGVRITDIVNNVEKI 410


>gi|293408350|ref|ZP_06652189.1| predicted protein [Escherichia coli B354]
 gi|291471528|gb|EFF14011.1| predicted protein [Escherichia coli B354]
          Length = 283

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKDHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E     +  + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               S  S   S  Q  + +D       Q+ V +   +      + +++  K G V+   
Sbjct: 316 AQFSSFDSLAMSNIQVPENMDLIKDVMLQITVELGKTVK----PINEILDFKPGSVLELD 371

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                   + ANGK+I + E+  + +NY IRITD +  D++ 
Sbjct: 372 KVVGESLDILANGKKIATGEVVVIDENYGIRITDIVKPDKRL 413


>gi|120597291|ref|YP_961865.1| hypothetical protein Sputw3181_0460 [Shewanella sp. W3-18-1]
 gi|146294564|ref|YP_001184988.1| hypothetical protein Sputcn32_3479 [Shewanella putrefaciens CN-32]
 gi|120557384|gb|ABM23311.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
 gi|145566254|gb|ABP77189.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 20/191 (10%)

Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           +LA      +S  LN  +    +S   L        L    ++L N  + T  + + +  
Sbjct: 105 QLASNYYGSMSTPLNSPLRDPSQSEFRLARKL----LLSVVDKLPNNTIDTSALEVELIK 160

Query: 193 VASSFVL-------------IIPQE-TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                 +               P    L +  L  L+ Q K    S DL    A     L
Sbjct: 161 GQMELAVSAVWSFNFSQESQTPPMLFCLTEHLLGHLAEQPKKSEVSADLPAKLAIWLKNL 220

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
            V I   +      +  +  L  G ++P     KT   LS     ++   +         
Sbjct: 221 PVKIQVTLGQHNIPVHSLGQLNTGDILPINLYPKTL--LSIGSTPLFHATVHSHEGLMVA 278

Query: 299 RITDRINFDQK 309
           ++T  +   ++
Sbjct: 279 KLTQDVYQYEE 289


>gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710b]
 gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
 gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710b]
 gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1710a]
          Length = 319

 Score = 43.9 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + S ++      P A     L V ++  ++ ++ T+  +     G V+P          
Sbjct: 223 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 281

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG+   + + 
Sbjct: 282 IRANGQPFGRGELIQVGEQLAVEVK 306


>gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 112]
          Length = 215

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + S ++      P A     L V ++  ++ ++ T+  +     G V+P          
Sbjct: 119 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 177

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG+   + + 
Sbjct: 178 IRANGQPFGRGELIQVGEQLAVEVK 202


>gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. Fw109-5]
          Length = 334

 Score = 43.9 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
           ++  A    L++P    L       +   +    ++ +         QL V ++  +   
Sbjct: 225 LDGGAGPRALVLPGGARLSGRHEDGTFHVEEIEMTQRMA--------QLPVVLEVELARV 276

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           + TL ++  L+ G ++P     +    L A  + +   EL  V     +RI D
Sbjct: 277 EVTLAELARLEPGGILPLALDRRGLVTLRAGERAVARGELVDVDGAVGVRIID 329


>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 368

 Score = 43.9 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 71/215 (33%), Gaps = 26/215 (12%)

Query: 114 ASHETIPQLYNRSLSTV-----EKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDI 166
                 P + ++  S +       ++     ++    ++     S  QE     E     
Sbjct: 152 GRQNLSPVIGDQPDSRIMVVNYTMRIKDMVESEFIECISAAAIDSLAQEIQARQEAQARA 211

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET-LLKTTLISLSSQNKSENQSE 225
              ++   R + E   ++ +        ++     P    ++     ++   +   N + 
Sbjct: 212 RQEEEEAARQAREMEKSVIVGQGAGRGQAT-----PAAGRMMDGAAPAVPGLSWGGNAAA 266

Query: 226 DLIDPFARKTYQL-----------NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREK 272
               P     Y+            +V ++  + + KT   LKDV+    G V+    +  
Sbjct: 267 ARTQPGQDTMYRSPAISGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQAD 326

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
               +  NG+ I   E+  +  N+ +RIT+ +N  
Sbjct: 327 APVDIIVNGQLIARGEVVVIDDNFGVRITEIVNTR 361


>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 96/322 (29%), Gaps = 58/322 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +            +   V I+           +   +   F+            + 
Sbjct: 39  EIGNISIGTSATTLYTLLRNKVTITTPDVALTTVEKLQEKYSIPFIAIIVDHTEGIEGSS 98

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA------KRTIAQISAVLNQC 149
            +         + + ++G          +      E +L+       + +   +  L+  
Sbjct: 99  ILIMKEEDAKIIADLMMGGDGRNTEVELD------ELRLSAVGEAMNQMMGSSATSLSTM 152

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLI--IPQETL 206
           +      SP      +       +    +E +  I+  M + + + S  +L+  IP    
Sbjct: 153 LKKNINISPPTLKRVNFADETLQSYFKKDEKIVKISFKMEVGDLIESEIMLLMTIPFAKK 212

Query: 207 LKTTLISLSSQNKSENQSEDLID-------------PFARK------------------- 234
           L   L+S+S     E    D  D             PF  K                   
Sbjct: 213 LVRELMSISKGIPFETSKSDDTDEHILENAPPEPQKPFNEKKAEKVSVKPVELEDFGEAE 272

Query: 235 --------TYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
                      ++V ++  + L +T   +K+++ +  G +I           +  NGK I
Sbjct: 273 TSGKKSSLDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGKLI 332

Query: 285 YSCELGRVGKNYTIRITDRINF 306
              E+  + +++ +RIT+ +N 
Sbjct: 333 ARGEVVVIDESFGVRITEILNS 354


>gi|254459518|ref|ZP_05072934.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206676107|gb|EDZ40594.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 351

 Score = 43.5 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 90/283 (31%), Gaps = 16/283 (5%)

Query: 26  GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFS 84
            D K  +  + S     +  L +   +   L + ++         + ++    E+  +F 
Sbjct: 4   SDAKAPDDQTVSPATAARVSLARAADQAFSLALRVNSIRQSRLDLADVVDQIDEDWALFP 63

Query: 85  QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
                   S   +      +I  +E        +      R L+  +K LA   +     
Sbjct: 64  LLH--DDGSVGVMCLEPACIIAFVETQTMG-RVSAAVAQPRRLTQTDKALAVAFLEGFLR 120

Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----FVLI 200
             ++ +     +        +     ++   L  +       +M IE V +       L 
Sbjct: 121 RFDEALKGAPTAYWTRGYRTEDAVATRHMVVLQLDGAEYRGFDMQIEVVEAERPINMRLF 180

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDP---FARKTYQLNVNIDTRINLKKTTLKDVV 257
           +P    +K      +++ K       L++      R     NV +D  +      L ++ 
Sbjct: 181 LP----IKEKFAKQNAKKKPTKTGVALLESEHTIRRSAMAANVEMDAIMCKVMLPLSELN 236

Query: 258 TLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIR 299
           TL+ G ++P          L  ++G+   S  LG++     ++
Sbjct: 237 TLQPGHLVPLPQDAAKQVHLVDSSGRSAQSVRLGQLHGMRAVK 279


>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
 gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
          Length = 270

 Score = 43.5 bits (101), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
                      +   L + +L        +L +  L  +     K  I+ +   L   + 
Sbjct: 52  KGEILFLIPAEIATALGDLMLAGEGTPKTELNDDDLDAI-----KEIISNVFGALKTTLG 106

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
             Q++ PNL DF   +    +     +E+   INM   + +V     ++  +        
Sbjct: 107 A-QDNMPNL-DFEIANVFAVDKEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNP 164

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLH 269
            + S  + + +++ +L          L++ +  R+ +      LKDV+ + IG ++    
Sbjct: 165 STKSEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQ 224

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
             K    +    K+I   E+  V  N+ I+IT  I   ++ L + 
Sbjct: 225 LAKEPLDILIEDKKIGEGEVVIVDGNFGIQIT-SIGSREERLNSL 268


>gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis
           TXDOH]
          Length = 320

 Score = 43.5 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + +   +     P A     L V ++  +  ++ T+  +     G V+P          
Sbjct: 224 DSPATAGAAPDASPPAFDIDALPVTLEFVLQDERVTVAQLARCHPGLVLPLRGVP-GEVT 282

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG    + + 
Sbjct: 283 IRANGQPFGIGELIQVGDQLAVEVK 307


>gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 275

 Score = 43.5 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P  +
Sbjct: 132 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 191

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 192 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 251

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 252 GELIACGNEFMVRIT 266


>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
 gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
           35243]
 gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
           35239]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
                 S+     +Q+    +  A      Y + + +   I   K  + DV+ L  G VI
Sbjct: 141 PKKEGESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 200

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
                  + A +  NG+ I   E+  V + Y IRIT+ ++
Sbjct: 201 ELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 240


>gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
 gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
           16294]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 95/264 (35%), Gaps = 29/264 (10%)

Query: 73  IIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS-LSTV 130
           II +     V  +  +S    ++  I    NL  +L + ++G       +  +R  +S  
Sbjct: 36  IISNIVPPIVLVKIKVSGDVDADAMIALPPNLAASLSDMMMG------EEASDREDVSED 89

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           +   AK  ++ I   ++  +S  +E         +I+ +  +       F         +
Sbjct: 90  DLDAAKEIVSNIFGAISNTLSAQKELPVLSFSIENIELVGDDDEVSLEAFSRMYVYKFNL 149

Query: 191 ENVASSFVLIIPQE--TLLKTTLISLSSQNKSENQSEDLIDP-----------FARK--- 234
           E+V S  + II ++   +L  +  S  S    EN+S                  + +   
Sbjct: 150 ESVHSLLMFIIDEKLKNVLFPSDTSSESAEIEENRSTAAASSHISSNCEEDITLSNEEMK 209

Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
                  + + +  RI  K+  LKDV+ + IG VI           +  +   +   E+ 
Sbjct: 210 NIALIMDVKLPVRVRIGKKRMLLKDVLNMDIGSVIELNQLANDPLEILVDNHVVAQGEVV 269

Query: 291 RVGKNYTIRITDRINFDQKSLKNF 314
            V  N+ I++T  I   ++ L   
Sbjct: 270 IVDGNFGIQVT-TIGTKKERLTQL 292


>gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
 gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 406e]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + S ++      P A     L V ++  ++ ++ T+  +     G V+P          
Sbjct: 223 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 281

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG+   + + 
Sbjct: 282 IRANGQPFGRGELIQVGEQLAVEVK 306


>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 374

 Score = 43.5 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 35/75 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ +++   +   +  +++++   +G +I    +      +  NG+ I   E+  + +
Sbjct: 299 IQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEVVVIDE 358

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    K
Sbjct: 359 NFGVRITEIIGKQSK 373


>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 227

 Score = 43.5 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
                   + + +   +   +  L +++++  G VI           +  NG    + E+
Sbjct: 145 ALRGVLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEV 204

Query: 290 GRVGKNYTIRITD 302
             +G+ Y IRI +
Sbjct: 205 IAIGEKYGIRIVE 217


>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
          Length = 105

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           ++SL++  K      +       +   + V I   +   K  +   + +  G VIP    
Sbjct: 4   IVSLTAYGKGHAPDSNSDAHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAA 63

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           E     + AN   I   E+   G    + ITD  +
Sbjct: 64  EHDEVWILANNHPIARGEIIIQGDRVAVSITDAAD 98


>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
 gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 117

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +   K TL +++  + G +I              NG+ I   E+    K
Sbjct: 34  LLDMEVIFTAELGATKITLAEILKFEKGSIIDLQKPAGESVETFVNGRIIGKGEVMVYEK 93

Query: 295 NYTIRITDRINFD 307
           N  IRI + ++ +
Sbjct: 94  NLAIRINEILDSN 106


>gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P  +
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P  +
Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 238

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 299 GELIACGNEFMVRIT 313


>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
 gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
           marina DSM 3645]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 88/297 (29%), Gaps = 49/297 (16%)

Query: 62  YTSCQSGK--FSHIIHS-FKENFVFSQASL---------SSWSSNFFIGCSNNLVITLLE 109
             +C+ GK   S  +          +                     +       I L+ 
Sbjct: 20  LAACEVGKDEASEALSRALGNPMTLAVGEAGAYSAAVAPEEAGLAIVLKVDLEAAIVLIP 79

Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
              G   +   +       T E KLA         +L +                +I   
Sbjct: 80  ASSGLLPDWYAEPDA----TGESKLATLAQELGMLLLPEEF---MPLDFKAGKIENIRAG 132

Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL-- 227
            K       +    +++ +T EN +S  +L+ P          + + Q  ++    D   
Sbjct: 133 LKKAGCT--DAAACVSLPLTGENGSSEALLVWPAPQADAIFKSTAAPQQPTDTPKNDPNL 190

Query: 228 --------------------------IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
                                     +  +A+   ++ + ++  +  KK  ++++  L I
Sbjct: 191 AVEVKPAPAPTPATPPPRTEPVGQRNLPHYAKSLLKIAIEVNVTLASKKMRVREITELGI 250

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318
           G +I F    +    L      I   E  ++G  + +R+T+ +  +++ +     +R
Sbjct: 251 GSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGDKFGMRVTNVLLPEERFISIKGKRR 307


>gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 244

 Score = 43.1 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P  +
Sbjct: 101 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 160

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 161 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 220

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 221 GELIACGNEFMVRIT 235


>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
 gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPF-ARKTYQLNVNIDTRINLKKTTLKDVVTL 259
           +P   ++    +   ++  + NQ  D          +Q+   +   +     ++ +++  
Sbjct: 38  LPTAQIIALPDLHAGAEGDAANQGGDASILKDWNPLHQIKARLQVCVGAVSLSVGELLGA 97

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           K  QV+           L+  GK +   +L  V  ++ +RIT+
Sbjct: 98  KEHQVLRLDREIDHPVDLTIEGKVVARGQLVAVDGHFAVRITE 140


>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 315

 Score = 43.1 bits (100), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 47/107 (43%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P+E +    +     +        + I    +K   + +++  RI     ++KDV++ K 
Sbjct: 209 PKEAVSVQEVAFPEFKYTPLQYDREQIGDDKKKLLDITLDVSVRIGSTVCSVKDVLSFKE 268

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           GQV+    +  + A + ANG+ I   ++   G ++  RI + +   +
Sbjct: 269 GQVLVLDKQAGSPADVVANGELIGRGDVLVSGDHFGARIIEIVGKRE 315


>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 502

 Score = 43.1 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 81/249 (32%), Gaps = 24/249 (9%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++    +      +  L+ +E    +
Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN-MNMTIE 191
             + Q+    +  +++ + T  + SP   +F +        N    + V  I  + +   
Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFPLEVEGL 373

Query: 192 NVASSFVLIIPQET------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN------ 239
                + +  P         +L      ++++  ++    ++  P   K           
Sbjct: 374 LKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSEMEAILE 433

Query: 240 ---VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
              V ++      K  L+  ++     VI          +L  NG  I    L RV  ++
Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILVRVDDHF 493

Query: 297 TIRITDRIN 305
            I++T+ + 
Sbjct: 494 GIQMTELVR 502


>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
 gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium lentocellum DSM 5427]
          Length = 403

 Score = 43.1 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V+++  + L +T+  +K+++    G +I           +  NGK + + E+  + +N
Sbjct: 329 MDVSLEVSVELGRTSRKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDEN 388

Query: 296 YTIRITDRINFDQKS 310
           + IRITD IN + + 
Sbjct: 389 FGIRITDIINPEDRI 403


>gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein
           [Legionella drancourtii LLAP12]
 gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein
           [Legionella drancourtii LLAP12]
          Length = 101

 Score = 43.1 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V    RI     T+ ++  LK GQ +    +      +  N + I   EL     
Sbjct: 31  VGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHED 90

Query: 295 NYTIRITD 302
           ++ ++IT+
Sbjct: 91  HFAVQITE 98


>gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
 gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis
           Bt4]
 gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
 gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis
           E264]
          Length = 320

 Score = 43.1 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + +   +     P A     L V ++  +  ++ T+  +     G V+P          
Sbjct: 224 DSPATADAPPDASPPAFDIDALPVTLEFVLQDERVTVAQLAGCHPGLVLPLRGVP-GEVT 282

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG    + + 
Sbjct: 283 IRANGQPFGIGELIQVGDQLAVEVK 307


>gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei NCTC 13177]
          Length = 260

 Score = 43.1 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + S ++      P A     L V ++  ++ ++ T+  +     G V+P          
Sbjct: 164 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 222

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG+   + + 
Sbjct: 223 IRANGQPFGRGELIQVGEQLAVEVK 247


>gi|323191518|gb|EFZ76779.1| lateral flagellar export/assembly protein [Escherichia coli
           RN587/1]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E     +  + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            + + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSMPLTLNVKIAELSLNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 38  LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
           +G    + + +    ++  DV  +    ++            + VF    LS+   +  +
Sbjct: 1   MGQQALQSICESLGRELGCDVSAASHVAEAVVVP--AKGLSLSAVFVFLELSATGGSAVL 58

Query: 98  GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES- 156
                ++   LE L G      P    R     E  LA   +A +         T  E  
Sbjct: 59  ELEPPVLFAALERLAGGPAR--PGPMTRLTRLEEASLAYLVLAAL-----MAFRTQGELQ 111

Query: 157 --SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
                      ++ +         +    + + +++    +   L++P   L  T     
Sbjct: 112 RWWGPRLAGMTVNRMDALARLDGRKAHLGVELVLSVGQRTAGARLVLPAVVLESTCRKLP 171

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             ++ S           A +    ++     +  ++    ++ TL +G V+ F 
Sbjct: 172 VQRDSSR----------APEILAASLGARCFLGCRQLLPSELETLAVGDVVVFE 215



 Score = 36.2 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V ++  +      L ++ TL+ GQ++P         +L    + +   EL  +      R
Sbjct: 277 VEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGAR 336

Query: 300 I 300
           I
Sbjct: 337 I 337


>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
 gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-63q42]
 gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
           43255]
 gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
          Length = 124

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   L + +   I   K TL+D++ L  G +I           +  + K +   ++  V
Sbjct: 43  QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVV 102

Query: 293 GKNYTIRITDRINFDQ 308
             N+ ++IT  ++ + 
Sbjct: 103 DLNFGVKITSIVSEED 118


>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
 gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
          Length = 289

 Score = 43.1 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            Y + + +  R+  K   LKD++   +G++I           +  NG +I   E   V  
Sbjct: 209 LYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVEG 268

Query: 295 NYTIRITDRINFD 307
            + ++I   IN D
Sbjct: 269 KFGLKIKRIINED 281


>gi|327254533|gb|EGE66149.1| lateral flagellar export/assembly protein [Escherichia coli
           STEC_7v]
          Length = 283

 Score = 43.1 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SRFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
 gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           pseudomallei 1655]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
           +S + S ++      P A     L V ++  ++ ++ T+  +     G V+P        
Sbjct: 237 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 295

Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301
             + ANG+     EL +VG+   + + 
Sbjct: 296 VTIRANGRPFGCGELIQVGEQLAVEVK 322


>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
           silvestris StLB046]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 66/196 (33%), Gaps = 12/196 (6%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +            +   VDI+  S      + +   F   +V  Q    +  S   
Sbjct: 50  EVGNISFGSSATALSSLLGQKVDITTPSISMINRNRLEQEFPHPYVAVQVEYTTGLSGMN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRS-LSTVEKKLAKRTIAQI----SAVLNQCI 150
            +    +    + + +LG        +  R  LS ++    +  + Q+    +  ++   
Sbjct: 110 LLVIKQSDAAIIADLMLGGDG-----INPRPELSEIQLSAVQEAMNQMMGSAATSMSTVF 164

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
           +   + SP   D  +I   +      ++E +  I+  + I   + S+ + ++P +   K 
Sbjct: 165 NQKVDISPPTIDLLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKI 224

Query: 210 TLISLSSQNKSENQSE 225
               +   ++    + 
Sbjct: 225 VKSLMGETDEPLTATT 240



 Score = 35.8 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ +   + L +T  ++K+++ L  G +I           +  N + I   E+  + +N
Sbjct: 344 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDEN 403

Query: 296 YTIRITDRINFDQKS 310
           + +RITD ++   + 
Sbjct: 404 FGVRITDILSQADRL 418


>gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           populi BJ001]
 gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           populi BJ001]
          Length = 101

 Score = 43.1 bits (100), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L V++   +      L  ++ +  G VI     E     + AN   I   ++   G   
Sbjct: 6   ELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGNRI 65

Query: 297 TIRITDRINF 306
           ++ +T+ I  
Sbjct: 66  SVEVTELIRK 75


>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
 gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
           DG1235]
          Length = 82

 Score = 43.1 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +  ++   +  +++V+ L  G VI      K    L  N K I   E+  V  
Sbjct: 11  LMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAYGEVVVVED 70

Query: 295 NYTIRITDRIN 305
           N+ I+IT+  N
Sbjct: 71  NFGIKITEMAN 81


>gi|212637765|ref|YP_002314290.1| hypothetical protein swp_5088 [Shewanella piezotolerans WP3]
 gi|212559249|gb|ACJ31703.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 308

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 18/196 (9%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            S  +  +   R+ S  E +L KR +      L      T E    L           NT
Sbjct: 127 GSFTSAAKSPLRAPSQSEFRLVKRLMLAAINTLPVADIDTDELELELI---------TNT 177

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
             +       +N  +        F        + +  L  ++ Q        DL D  A+
Sbjct: 178 TPIKAPVCCELNFPIAHIGPGIRFY-------MAEYLLGLMAEQPSQYQADPDLNDKLAK 230

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
              QL   +   +  +   +  +  LK+G ++P      +   ++   + I+   +    
Sbjct: 231 SLKQLPFRVMLELGQQSIPVTGLQQLKVGDILPMNL--HSRCPVTVGKRPIFYATVHAHE 288

Query: 294 KNYTIRITDRINFDQK 309
                ++T      ++
Sbjct: 289 GQMVAKLTQEAFQTEE 304


>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
 gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
          Length = 288

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
            Y + + +  R+  K   LKD++   +G++I           +  NG +I   E   V  
Sbjct: 208 LYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVEG 267

Query: 295 NYTIRITDRINFD 307
            + ++I   IN D
Sbjct: 268 KFGLKIKRIINED 280


>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
 gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
 gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
 gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
          Length = 103

 Score = 43.1 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
           F  +   +NV I   +      ++ ++ +  G VIP   +      + AN   I   E+ 
Sbjct: 20  FVSQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQ 79

Query: 291 RVGKNYTIRITDRIN 305
                  I++T   +
Sbjct: 80  ISDDRIAIQVTRAAD 94


>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 354

 Score = 43.1 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   I   +  LKDV+    G V+    +      +  NG+ I   E+  +  
Sbjct: 275 IMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD 334

Query: 295 NYTIRITDRINFD 307
           N+ +RI++ +N  
Sbjct: 335 NFGVRISEIVNAR 347


>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 125

 Score = 42.7 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            Q+ V +   +   + +L +++ ++ G VI           +  NG+ +   E+  V   
Sbjct: 47  RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGK 106

Query: 296 YTIRITDRINFD 307
           Y +R+ D I+ +
Sbjct: 107 YGLRLVDVIDTN 118


>gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           extorquens PA1]
 gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens AM1]
 gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           DM4]
 gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           extorquens PA1]
 gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           chloromethanicum CM4]
 gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens AM1]
 gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium
           extorquens DM4]
          Length = 101

 Score = 42.7 bits (99), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L V++   +      L  ++ +  G VI     E     + AN   I   ++   G   
Sbjct: 6   ELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGNRI 65

Query: 297 TIRITDRINF 306
           ++ +T+ I  
Sbjct: 66  SVEVTELIRK 75


>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
 gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
           sp. MED92]
          Length = 144

 Score = 42.7 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 206 LLKTTLISLSSQNKSENQS--EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           LL  T ++  S    E Q     + DP       + V +   +      + +++ L  G 
Sbjct: 34  LLAATGVTGDSVELDELQDEGTPVSDPKLDVILDIPVTLSMEVGQTDIPISNLLQLNQGS 93

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           VI           +  NG  I   E+  V   Y IR+TD I+  ++  +
Sbjct: 94  VIELDRVAGEPLDVMVNGTLIAHGEVVVVNDRYGIRLTDVISPQERIKR 142


>gi|323975947|gb|EGB71041.1| lfiM protein [Escherichia coli TW10509]
          Length = 283

 Score = 42.7 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SRFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQVKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
 gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
           98-5491]
          Length = 119

 Score = 42.7 bits (99), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +   K  L +++  + G +I           +  NG+ +   E+    K
Sbjct: 33  LLDMKVAFHAELGSAKIPLLEILRFEKGSIIDLQKPAGESVEIYINGRIVGKGEVMVYEK 92

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 93  NLAIRVNEILDSN 105


>gi|170680472|ref|YP_001742354.1| lateral flagellar export/assembly protein LfiM [Escherichia coli
           SMS-3-5]
 gi|300936107|ref|ZP_07151047.1| surface presentation of antigens protein [Escherichia coli MS 21-1]
 gi|170518190|gb|ACB16368.1| lateral flagellar export/assembly protein LfiM [Escherichia coli
           SMS-3-5]
 gi|300458727|gb|EFK22220.1| surface presentation of antigens protein [Escherichia coli MS 21-1]
          Length = 283

 Score = 42.7 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E     +  + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Magnetospirillum magnetotacticum MS-1]
          Length = 101

 Score = 42.7 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +L V++   +      L  ++ +  G VI     E     + AN   I   ++   G   
Sbjct: 6   ELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGNRI 65

Query: 297 TIRITDRINF 306
           ++ +T+ I  
Sbjct: 66  SVEVTELIRK 75


>gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis
           MSMB43]
          Length = 168

 Score = 42.7 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 206 LLKTTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           L +  +         E  + D      P A     L V ++  ++ ++ T+  +     G
Sbjct: 58  LTEPAVDDPHDDLHDEPTTADALPDASPQAFDVAALPVTLEFVLHDERVTVAQLAGCHPG 117

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            V+P          + ANG      EL +VG+   + + 
Sbjct: 118 LVLPLRGAP-GEVTIRANGLPFGRGELIQVGEQLAVEVK 155


>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
             A     + + I   +   + T+K +V L+ G ++      +    L  NGK +   EL
Sbjct: 388 QTAPSIDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGEL 447

Query: 290 GRVGKNYTIRITD 302
             +G    +R+ +
Sbjct: 448 LSIGDALGVRVLE 460


>gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 324

 Score = 42.7 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 68/253 (26%), Gaps = 39/253 (15%)

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL------------------ 127
             L +      +     LV+ L++ + G      P      +                  
Sbjct: 66  IDLPALPGTAILEVEPALVVRLVDRMAGGDGGPAPAAALTPVEATALELLALAALDGACG 125

Query: 128 -STVEKKLAKRTI-------AQISAVLNQCISTTQESSPNLEDFY---------DIDYLK 170
            + VE++LA R           ++  L       +  +  L             D+D   
Sbjct: 126 VAEVEERLAPRLARATAEPAGALALELEIAAGQARGHARLLVPPAAVRALRGPADLDRRV 185

Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDL 227
                L           +         V+  P   ++ L     +    +   E    + 
Sbjct: 186 PVPGSLRRGTAALTAAELDALEPGDVLVVDPPADGRDALALPGGLRALGRIDGEGFHVEE 245

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +   R   QL V ++  +      L +V  L+ G V+      +    L    + +   
Sbjct: 246 TEMIERH-AQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARG 304

Query: 288 ELGRVGKNYTIRI 300
           EL  V     +RI
Sbjct: 305 ELVDVEGAVGVRI 317


>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
           1740]
 gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
          Length = 289

 Score = 42.7 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 14/235 (5%)

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
           S          L   L + +LG   E+  ++    +    K++A      IS  L+    
Sbjct: 55  SGKIAFLVPPALGTALADLMLGGEGESREEMSEDDVDAT-KEIASNIFGAISTALSAQKE 113

Query: 152 TTQ-ESSPNLEDFYDIDYLKKNTNRLSNEFVT---TINMNMTIENVASSFVLIIPQETLL 207
             +   +P   DF     +  ++      F     TI   + +   +S   +  P+    
Sbjct: 114 LPKLNFAPEKADFVQGGSIDLSSFEKIFTFSFSLNTIRSELYLAVDSSFVKIFEPKSAPS 173

Query: 208 KTTLISLSSQNKSENQSE-----DLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTL 259
            +      S +            +L +P  +       + + +  RI  KK  LKDV+++
Sbjct: 174 ASASSYSESGSSFGGSYSGAPNVNLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISM 233

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
            IG V+           +  + K I   E+  V  N+ I+IT+ I   ++ L+  
Sbjct: 234 DIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQITE-IGTKRERLEQL 287


>gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
 gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia pseudomallei MSHR346]
          Length = 319

 Score = 42.7 bits (99), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
            + S ++      P A     L V ++  ++ ++ T+  +     G V+P          
Sbjct: 223 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 281

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG+   + + 
Sbjct: 282 IRANGRPFGRGELIQVGEQLAVEVK 306


>gi|306813323|ref|ZP_07447516.1| Lateral flagellar export/assembly protein Flagellar motor switch
           C-ring (FliM-like) [Escherichia coli NC101]
 gi|305854086|gb|EFM54525.1| Lateral flagellar export/assembly protein Flagellar motor switch
           C-ring (FliM-like) [Escherichia coli NC101]
          Length = 283

 Score = 42.7 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E     +  + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           414]
          Length = 102

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 78  EKNLAIRINEILDS 91


>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
 gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter sp. X513]
 gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
 gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X561]
 gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter sp. X513]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVI 265
           K  +  +  Q+  E  +    +        L+V +   + L KT   +KD++ L  G +I
Sbjct: 267 KVNVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKKLIKDILELSEGSII 326

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                      + ANGK I   E+  + +N+ +RITD ++  ++ 
Sbjct: 327 ELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHQSKRI 371


>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 94/310 (30%), Gaps = 58/310 (18%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           V I+        +  +   F   +V            +  +      V+ +   ++G   
Sbjct: 63  VTITTPKVSVLSWEELKKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTNLMMGGEG 122

Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
           +    ++ +  LS + + + +  I   +  L+  ++ T   SP      D          
Sbjct: 123 KVEDGEITDLHLSAIGEAMNQM-IGSAATSLSTLLNKTINISPPKAFIVDFTASLPTDIS 181

Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIP--------QETLLK--TTLISLSSQNKSENQS 224
                V  I   M +  +  S  + ++P        Q  L K       ++ Q +S N  
Sbjct: 182 FPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVI 241

Query: 225 EDLIDPFARK------------------------------------------TYQLNVNI 242
            +  +                                                  L+V +
Sbjct: 242 IENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPL 301

Query: 243 DTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              + L KT   +KD++ L  G +I           + ANGK I   E+  + +N+ +RI
Sbjct: 302 TITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRI 361

Query: 301 TDRINFDQKS 310
            D ++  ++ 
Sbjct: 362 IDIVHQSKRI 371


>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
 gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
 gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
          Length = 112

 Score = 42.7 bits (99), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + V ++  +     TL +++ + IG VI      K    +  NGK I   EL  +    
Sbjct: 41  DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIIDGKI 100

Query: 297 TIRITDRINFDQ 308
            ++I + +   +
Sbjct: 101 GVKIKEVVKEQR 112


>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
 gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
          Length = 389

 Score = 42.3 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95
            +G +            ++  V+I+  S +  + + I +    E        +  +S   
Sbjct: 45  EIGNISFGSSATTLSTLLNQKVEITTPSVEVIEKADIDNEVTFEPVSVQVNYIDGFSGKN 104

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
                      + + +LG    T  +     L+ +     + T+ Q+       +ST  +
Sbjct: 105 VFVIKARDAAIIADIMLGGDGTTPDET----LNDIHLSAVQETMNQMMGAAATSMSTVFD 160

Query: 156 SSPNLEDFYDIDYLKKNTN--RLSNEFVTTINMNMTIEN-VASSFVLIIP 202
              ++     I+ ++ N N      +    +   +T+ N + S+ + +IP
Sbjct: 161 MKVDISPPEIINGIEDNANTVVFDEDVYVKVFFRLTVGNLIDSNMMQLIP 210



 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVI 265
            T   +  S  +S   S+            L+V +   + L +T  ++ D++ L  G +I
Sbjct: 283 PTVQEAAFSNFESPTLSKQEHRNL---DMLLDVPLKVTVELGRTKQSISDILDLSAGSII 339

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                      +  N K +   E+  + +N+ +R+TD I+   + 
Sbjct: 340 ELDKLAGEPVDILVNEKLVAEGEVVVIEENFGVRVTDIISQTDRI 384


>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 279

 Score = 42.3 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 77/263 (29%), Gaps = 28/263 (10%)

Query: 44  KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103
           + +   F     ++++++    Q  +                    S            L
Sbjct: 44  RLIGDYFLRNYRINLELNRIDVQEERGEE-----------PDCIYRSAMGKVGFSIDRAL 92

Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
           +   LE   G     I       +ST E+++  R        +    +    S  + E F
Sbjct: 93  LTEALECYYGG--TVIASQDTPPISTSEQRMRNRL----GMDITDIFAR---SILSGETF 143

Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
             +D  + +    S E+V        I    SS  L       L T L+   +   +   
Sbjct: 144 GKLDSYRNDYEETSWEYVAEYEYISHITGSRSSIYL------YLDTELVDELTSRLAGPP 197

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
              L          L V +D  +   +  L  V+ L++  ++    R      +  N ++
Sbjct: 198 VPRLPGNPIDHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQK 255

Query: 284 IYSCELGRVGKNYTIRITDRINF 306
           ++   +        +   + +N 
Sbjct: 256 LFRGTIFEEDGALFLTSLESVNP 278


>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
 gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
           amyloliquefaciens LL3]
          Length = 377

 Score = 42.3 bits (98), Expect = 0.086,   Method: Composition-based stats.
 Identities = 37/333 (11%), Positives = 97/333 (29%), Gaps = 60/333 (18%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  VDI+  S      S I   F              +  + 
Sbjct: 42  EIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGFDGSN 101

Query: 96  FIGCSNNLVITLLENLLGASHET-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + ++G   +   P L    LS V++ + +  +   +  ++   S   
Sbjct: 102 LLVVEQSDAAIIADLMIGGDGQGADPSLGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKI 160

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTI--NMNMTIENVASSF--------------- 197
           + SP   +  D+   K       ++ +  +   + +     +S                 
Sbjct: 161 DISPPRVELLDVTEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLIAEL 220

Query: 198 ----------VLIIPQETLLKTTLISLSSQNK---------------------------- 219
                      +  P+ET           Q                              
Sbjct: 221 MDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQGTAKKAAPVQVAPVEFQA 280

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAIL 277
            +  + D           +++ +   + L +T  ++K+++ L  G +I           +
Sbjct: 281 FDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDI 340

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             N + +   E+  + +N+ +R+TD ++   + 
Sbjct: 341 LVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 373


>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
 gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
          Length = 238

 Score = 42.3 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R  Y + + +   I   +  ++ V+ L  G V+       + A +  NG+ +   E+  V
Sbjct: 157 RMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGSPADVLVNGRLVARGEVVVV 216

Query: 293 GKNYTIRITDRINFDQ 308
            + Y IR+T+ +  + 
Sbjct: 217 DEVYGIRVTEIVAGND 232


>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-66c26]
 gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
           107932]
 gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-76w55]
 gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-97b34]
 gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-37x79]
 gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
 gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
           QCD-32g58]
 gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
           CD196]
 gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
           R20291]
          Length = 124

 Score = 42.3 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 33/76 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   L + +   I   K TL+D++ L  G +I           +  + K +   ++  V
Sbjct: 43  QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV 102

Query: 293 GKNYTIRITDRINFDQ 308
             N+ ++IT  ++ + 
Sbjct: 103 DLNFGVKITSIVSEED 118


>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 375

 Score = 42.3 bits (98), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V +   + L K+  T++D++ L  G VI           +  NGK I   E+  + +N
Sbjct: 297 MDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDEN 356

Query: 296 YTIRITDRINF 306
           + +RITD ++ 
Sbjct: 357 FGVRITDIVSP 367



 Score = 37.3 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 49/154 (31%), Gaps = 4/154 (2%)

Query: 54  MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNFFIGCSNNLVITLLENLL 112
           M   VDI+         + +   +   FV       +    N  +    + V  +++ ++
Sbjct: 1   MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60

Query: 113 GASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
           G    + P +L     S + + + +  +   +  +   +    + SP + +  D    K 
Sbjct: 61  GGDGMSPPAELNEIHFSAISEAMNQM-MGSAATSMATMLQKKIDISPPMLNTIDFASEKL 119

Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLI-IPQE 204
               +      +  M +     +    +  IP  
Sbjct: 120 PRPDVDPVIKVSFRMVIEGLVDSELMQIYPIPFA 153


>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
 gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
           27750]
          Length = 437

 Score = 42.3 bits (98), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 68/201 (33%), Gaps = 23/201 (11%)

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
            + PQ   +  S       +  + Q +           ++    +   ++         +
Sbjct: 246 NSQPQPEPQPAS-------QAPVQQPAPQAQPVQQPAPQAQSVQQPDMNMQQAGMMGQAV 298

Query: 177 SNEFVTTINMNMTIENVASSFVLIIP-QETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
             + +    M   +      +   +P Q  + +   +   +Q +  N +     PFA   
Sbjct: 299 PQQGMA---MQQGMPMQGMPYGYGMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDV 355

Query: 236 ----------YQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
                        +V ++  + L +TT  +KD++    G ++           +  NGK 
Sbjct: 356 NPISQKENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKY 415

Query: 284 IYSCELGRVGKNYTIRITDRI 304
           +   E+  + +++ +RIT+ I
Sbjct: 416 VAKGEVVVIEESFGVRITEII 436


>gi|331671784|ref|ZP_08372580.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA280]
 gi|331070773|gb|EGI42132.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA280]
          Length = 283

 Score = 42.3 bits (98), Expect = 0.091,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E     +  + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPT 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
 gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
           49179]
          Length = 139

 Score = 42.3 bits (98), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +      L +V+  + G VI              NG+ I   E+    K
Sbjct: 57  LLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK 116

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 117 NLAIRLNEVLDSN 129


>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
 gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
          Length = 99

 Score = 42.3 bits (98), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/86 (13%), Positives = 27/86 (31%)

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           S D   P      ++ V++   +      +  V+ L  G +I     E     + AN   
Sbjct: 10  SRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVKVLANNLP 69

Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309
           I +  +        + + + +     
Sbjct: 70  IANGVVLVDRNRIAVEVKEMLPRSPT 95


>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii DSM 519]
 gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
           sticklandii]
          Length = 383

 Score = 42.3 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +TT  + D++    G ++           +  NGK++   E+  + +NY
Sbjct: 307 DVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEVVVIDENY 366

Query: 297 TIRITDRINFDQKS 310
            IRITD I  +++ 
Sbjct: 367 GIRITDIIKAEKRL 380


>gi|238752881|ref|ZP_04614346.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380]
 gi|238708920|gb|EEQ01173.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380]
          Length = 292

 Score = 42.3 bits (98), Expect = 0.094,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 197 FVLII--PQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKTT 252
           F L+I  P    +   L  L+++++SE +      I  F +   +L + + ++++  + T
Sbjct: 179 FTLLIDLPH---VDRFLSKLNNEHQSEKKKNQTFSIKQFDQLVKKLPIRLTSKLSCSELT 235

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             D++ LK G +IP    E          + ++S  +        +  ++  +   +   
Sbjct: 236 FSDLMKLKEGDIIPATLPEHFPV--FIGKESLFSAVVSESRGKLFL--SEFNDKTNEINH 291

Query: 313 N 313
           +
Sbjct: 292 D 292


>gi|85059282|ref|YP_454984.1| type III secretion system protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779802|dbj|BAE74579.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 350

 Score = 42.3 bits (98), Expect = 0.096,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
               +  S  ++    +              V +D  +     T+ D+  L +G V+P  
Sbjct: 245 PPAATADSGGRAAITDDVNRTTLLLNALPQQVRVD--VGELSLTVGDLRRLAVGDVVPVT 302

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            R    AIL  + + I   EL        +RIT
Sbjct: 303 GRFTPYAILRLHNQTIGQGELVSCDGALLVRIT 335


>gi|294678113|ref|YP_003578728.1| surface presentation of antigens protein family [Rhodobacter
           capsulatus SB 1003]
 gi|294476933|gb|ADE86321.1| surface presentation of antigens protein family [Rhodobacter
           capsulatus SB 1003]
          Length = 418

 Score = 42.3 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 12/125 (9%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 192 NVASSFVLIIPQE----TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
                 +  +P      +L +   ++       + ++ +            +  +D  ++
Sbjct: 185 ERKGKLIWAVPVNGRGHSLRRLPGLADEGPISPDREAAEWAHRLENSVMGASAQLDAVLH 244

Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRINF 306
                L  V+ L+ G  IP          +     +++ +  LG+      +R+ +  + 
Sbjct: 245 RVTLPLAAVMRLRAGMDIPIPSDALENLTVEGVGRRKLSAARLGQHRGLRAVRLIE--HE 302

Query: 307 DQKSL 311
           +++ +
Sbjct: 303 EEELM 307


>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
          Length = 502

 Score = 42.3 bits (98), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 80/250 (32%), Gaps = 26/250 (10%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++    +      +  L+ +E    +
Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N ++      +   + +E 
Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IAEGKTVEVIFPLEVEG 372

Query: 193 VA-SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-------PFARKTYQLN----- 239
           +  +    I       +   + L+ Q +      D+ +       P   K          
Sbjct: 373 LLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSEMEAIL 432

Query: 240 ----VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
               V ++      K  L+  ++     VI           L  NG  I    L RV  +
Sbjct: 433 EDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDDH 492

Query: 296 YTIRITDRIN 305
           + I++T+ + 
Sbjct: 493 FGIQMTELVR 502


>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 124

 Score = 42.3 bits (98), Expect = 0.100,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
            R+   + T++ ++ LK G V+           L  +G+     E+  + + Y +RIT  
Sbjct: 52  ARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINEMYGVRITGY 111

Query: 304 INFD 307
            + D
Sbjct: 112 SDED 115


>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 80

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++++I   I  K  TL  ++ LK G +I F  + +    +  NG++    EL  V
Sbjct: 9   EDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIV 68

Query: 293 GKNYTIRITDRI 304
              Y++R+ D +
Sbjct: 69  NDKYSLRLVDLV 80


>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 401

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 45/103 (43%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
              +   S Q  S +Q  +++         + + I   +   K  +KD++ L  G +I  
Sbjct: 294 PVEVSRASFQPLSGSQDTEVVPKNIDLILDVPLEISVVLGRTKKNIKDILNLGTGSLIEL 353

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
               +    +  NGK++   E+  + +N+ +RIT  ++ ++K 
Sbjct: 354 DKLAEEPVEILVNGKKVAYGEVVVIDENFGVRITGIVSNEEKI 396



 Score = 36.2 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 58/196 (29%), Gaps = 8/196 (4%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+           + + F+                  
Sbjct: 46  EIGNISMGSASTALSTIINQQVNITTPVVVVTTLKELKNEFEVPNVALEVKYTEGIIGEN 105

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ- 154
            +         +   ++G   +  P +    L  +E       + Q+       ++T   
Sbjct: 106 LLVMKITDAAVIASLMMGGDGKIDPDIKE--LGEIEISAVSEAMNQMIGSAATSMATMLM 163

Query: 155 ---ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP +   ++            +E V  ++ ++ I  +  SS + ++P  T  K  
Sbjct: 164 REVNISPPVSKVWNDITKPLTEGISEDEAVVKVSFSLKIGELVDSSIMQVLPIATAKKVV 223

Query: 211 LISLSSQNKSENQSED 226
            I +  +  +  +S  
Sbjct: 224 SIMMGQEETAPAESAP 239


>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
 gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
          Length = 122

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 239 NVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           N+ ID  + +  T L   D++ L  G VI           L  NG+ + + E+  V   Y
Sbjct: 46  NIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVVNGKY 105

Query: 297 TIRITDRIN 305
            +++ D ++
Sbjct: 106 GVKLIDVVD 114


>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 572

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 96/325 (29%), Gaps = 55/325 (16%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +            ++  V I+         + ++ SF+  F+  +           
Sbjct: 246 EVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKVQYTEGIIGFN 305

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
               +    + + + ++G          +  ++ +E   A   + Q+       ++    
Sbjct: 306 LWVVTLRDALIIADLMMGGEG----IPASNEITELEISAASEAMNQMIGTAATSLAAIFN 361

Query: 156 SSPNLEDFYDIDYLKKNT--NRLSNEFVTTINMNMTIENV--ASSFVL------------ 199
              N+          +      +    +  I+  M + +V       +            
Sbjct: 362 RIINISPPETHIIRARENLGEIIDTHPLVVISFRMIVGDVMDTEIMQIMSVETAKYEVGL 421

Query: 200 ----------------------IIPQETLLKTTLISLSSQNKS---------ENQSEDLI 228
                                   P        L  +++  ++         E  S+   
Sbjct: 422 LLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEERVSQTPA 481

Query: 229 DPFARKT-YQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
           D    K    L+V ++  + L KT   +KDV+ L  G V+      +    +  NG  + 
Sbjct: 482 DVNWDKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVA 541

Query: 286 SCELGRVGKNYTIRITDRINFDQKS 310
             E+  V +N+ +RIT+ I   ++ 
Sbjct: 542 RGEVVVVNENFGVRITNVITPQERI 566


>gi|331645399|ref|ZP_08346503.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli M605]
 gi|331045561|gb|EGI17687.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli M605]
          Length = 283

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKSHNGFPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E     +  + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 250

 Score = 42.3 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            QS    +  A      Y + + +   I   K  + DV+ L  G VI       + A + 
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305
            NG+ I   E+  V + Y IRIT+ ++
Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240


>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 119

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V   + +   K  L +++  + G +I           +  NG+ I   E+    K
Sbjct: 33  LLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAGESVEIFINGRIIGKGEVMVYEK 92

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 93  NLAIRVNEILDSN 105


>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 502

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 80/250 (32%), Gaps = 26/250 (10%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++    +      +  L+ +E    +
Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N ++      +   + +E 
Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IAEGKTVEVIFPLEVEG 372

Query: 193 VA-SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-------PFARKTYQLN----- 239
           +  +    I       +   + L+ Q +      D+ +       P   K          
Sbjct: 373 LLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSEMEAIL 432

Query: 240 ----VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
               V ++      K  L+  ++     VI           L  NG  I    L RV  +
Sbjct: 433 EDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDDH 492

Query: 296 YTIRITDRIN 305
           + I++T+ + 
Sbjct: 493 FGIQMTELVR 502


>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 250

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            QS    +  A      Y + + +   I   K  + DV+ L  G VI       + A + 
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305
            NG+ I   E+  V + Y IRIT+ ++
Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240


>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 370

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 84/279 (30%), Gaps = 56/279 (20%)

Query: 87  SLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV 145
                  N  +      V+ + + ++G     T  ++    LS + + + +  I   S  
Sbjct: 90  YTEGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEAMNQM-IGSASTS 148

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQE 204
           L+  I  +   SP      D +          + +V  I   M +  +  S  + +IP  
Sbjct: 149 LSTLIGESINISPPRAFVVDFNKGLPENISFPDGYVVKIAFKMVVGEIIDSEIMQLIPIA 208

Query: 205 TLLKTTLISLSSQ----------------------------------------------- 217
              +     +S                                                 
Sbjct: 209 FAKRLVEQVMSKNVENSPKESFQGVQDDDIIKTGTKGINNEFSDEVKSTVKHKAEKVDVK 268

Query: 218 ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHRE 271
                + +++ E            +++ ++  + L +T   +KD++ L  G +I      
Sbjct: 269 PVIFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELDKLA 328

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  NGK I   E+  + +N+ +RI D +   ++ 
Sbjct: 329 GEPVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 367


>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
 gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
           43063]
          Length = 250

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            QS    +  A      Y + + +   I   K  + DV+ L  G VI       + A + 
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305
            NG+ I   E+  V + Y IRIT+ ++
Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240


>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
           43243]
          Length = 197

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T  T+KD++    G +I           +  NGK +   E+  + +N
Sbjct: 126 MDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIAGESVDVLVNGKNVAKGEVVVIEEN 185

Query: 296 YTIRITDRINF 306
           + +RIT+ I  
Sbjct: 186 FGVRITEIIKE 196


>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
 gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
 gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
           18818]
          Length = 116

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 1/104 (0%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
           E++L    I  + + +     ED++  +      + V  +  +   K  L +++  + G 
Sbjct: 4   ESILDKQRIHSAKEIELATYLEDMMKNY-TGLLDMEVIFNAELGNTKIALGEILRFEKGS 62

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
           +I              NG+ I   E+    +N  IRI + ++ +
Sbjct: 63  IIDLGKPAGESIETFINGRVIGKGEVMVYERNLAIRINEILDSN 106


>gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
 gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
          Length = 255

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 249 KKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
              T+ +++++K G VI    +   + +  + +G++++   LG    N+ I++T +
Sbjct: 200 ASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGVNDNNFAIKVTGK 255


>gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MEX-5]
 gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MEX-5]
          Length = 377

 Score = 41.9 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q  +L       +  +   N + D  DP A     L V ++  I+     +  +  ++ G
Sbjct: 270 QTAVLLKDPFMANEADHPGNDTPDRNDPVA--IGALEVPVNFEIDTVALPIDQLAAMRQG 327

Query: 263 QVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            VI            L+A+ + I   EL  VG +  +RI      D 
Sbjct: 328 YVIELSRTTSDMQVRLTAHSQVIGHGELVSVGDHLGVRILQMAQRDD 374


>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
 gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
           51333]
          Length = 250

 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            QS    +  A      Y + + +   I   K  + DV+ L  G VI       + A + 
Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305
            NG+ I   E+  V + Y IRIT+ ++
Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240


>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
 gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
 gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
          Length = 102

 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 226 DLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           D           L++ +D    L     ++ +++ L++G VI           L  N + 
Sbjct: 9   DRHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRI 68

Query: 284 IYSCELGRVGKNYTIRITDRINF 306
               E+    KN  IRI + ++ 
Sbjct: 69  FGKGEVMVYEKNLAIRINEILDS 91


>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
          Length = 136

 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 56  IMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVVND 115

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   +   +
Sbjct: 116 KYGVRITDIITPSECMRR 133


>gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 122

 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 33/93 (35%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           L+++   +    +           L V++   +   +  L  ++ +  G VI     +  
Sbjct: 4   LAAKACPDRTGGETGWRAVAVFETLKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSD 63

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
              + AN   I   ++   G   ++ +T+ I  
Sbjct: 64  MVEILANDHPIARGQIVVTGDRISVEVTELIRK 96


>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
           824]
 gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
           [Clostridium acetobutylicum ATCC 824]
          Length = 413

 Score = 41.9 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K  +KD++ L  G +I      +    +  NGK++   E+  V +
Sbjct: 333 ILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVVDE 392

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RIT  +N +++ 
Sbjct: 393 NFGVRITSIVNSEERI 408


>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
 gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
          Length = 98

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                ++V+  + +     ++++++ L++G VI           L  N +     E+   
Sbjct: 13  EDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVMVY 72

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 73  EKNLAIRINEILDS 86


>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
 gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Thermomicrobium
           roseum DSM 5159]
          Length = 128

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K ++ L+ G V+           L+ N   I   E+  V +
Sbjct: 47  LRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDE 106

Query: 295 NYTIRITDRINFDQKS 310
            + +RIT+ ++ +++ 
Sbjct: 107 KFAVRITEIVSPEKRL 122


>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
          Length = 395

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K  +KD++ L  G +I      +    +  NGK++   E+  V +
Sbjct: 315 ILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVVDE 374

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RIT  +N +++ 
Sbjct: 375 NFGVRITSIVNSEERI 390


>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
 gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
          Length = 101

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V  ++ I   + ++++++ LK G +I         A +  NG+ I   E+    K
Sbjct: 18  LIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRIIGKGEVMVYEK 77

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 78  NLAIRLNEVLDAN 90


>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
 gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
 gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
          Length = 95

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 29/74 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                + +D  +     ++ + + L  G +I       +   +  N + I + ++  + +
Sbjct: 11  LVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTGDIIVIDE 70

Query: 295 NYTIRITDRINFDQ 308
              +R+ D ++ D 
Sbjct: 71  KLAVRVQDAMDSDN 84


>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 102

 Score = 41.9 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 78  EKNLAIRINEILDS 91


>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
 gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus bovienii SS-2004]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K ++ L  G V+P          +  NG  I   E+  V  
Sbjct: 55  IMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVVSD 114

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IRITD I   ++  +
Sbjct: 115 KYGIRITDIITPSERMRR 132


>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
 gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
          Length = 105

 Score = 41.6 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++++D    L  TT+   +++  + G VI           L  N +     E+    KN
Sbjct: 23  MDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVYEKN 82

Query: 296 YTIRITDRINF 306
             IRI + ++ 
Sbjct: 83  LAIRINEILDS 93


>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
 gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
 gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
 gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
           269.97]
 gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           1336]
 gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 102

 Score = 41.6 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 18  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 78  EKNLAIRINEILDS 91


>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
 gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
 gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
 gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K T+K+++ L  G VI           +  NGK +  CE+  + +
Sbjct: 339 ILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEVVVINE 398

Query: 295 NYTIRITDRINFDQKSLK 312
            + IRITD +   ++  K
Sbjct: 399 TFGIRITDIVQPSERMTK 416



 Score = 36.6 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 69/221 (31%), Gaps = 7/221 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95
            +  +          + +   V+I+           I   +    V            + 
Sbjct: 43  EIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQIRKDYPIPSVIVDVRYKAGIEGSN 102

Query: 96  FIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +  S      +++ ++G + E  P +L    +S + + + +  +   +  ++   ++  
Sbjct: 103 LLILSQRDGAVIVDLMMGGTGENPPTELSELGISGISEAMNQM-MGSAATSMSTMFNSVV 161

Query: 155 ESSPNLEDFYDIDYLKKN---TNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTT 210
           + +P      D+     +       S+E +  I+  M +E+V  S ++ +IP        
Sbjct: 162 DITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMVVEDVIDSILVQVIPIHVAKGMV 221

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
              L +   S ++ E    P          ++         
Sbjct: 222 GKLLGTMGGSGSKPEPKSAPTPTPAPAPAPSLQMEQPQAPV 262


>gi|307136840|ref|ZP_07496196.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           H736]
 gi|331640696|ref|ZP_08341843.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli H736]
 gi|331040070|gb|EGI12278.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli H736]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMISQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 356

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K  +KD++ L  G +I           L  NGK I   E+  + +
Sbjct: 277 LMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 336

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+TD ++   + 
Sbjct: 337 NFGVRVTDIVSPTDRL 352


>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
           BAA-613]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   I   +  LKDV+    G V+    +      +  NG+ I   E+  +  
Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVVVIDD 348

Query: 295 NYTIRITDRINFD 307
           N+ +RI++ +N  
Sbjct: 349 NFGVRISEIVNTR 361


>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
 gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
           5305]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 228 IDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
               A      +V +D RI L      +++VV+LK G V+P          +  NG+ I 
Sbjct: 145 AQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNGRLIA 204

Query: 286 SCELGRVGKNYTIRITDRINFDQ 308
             E+  +  N+ +R+ + +   +
Sbjct: 205 RGEVLVLNDNFCVRVAEILTPKE 227


>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 95

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                + +D  +     T+KD + L  G ++           +  N + I + ++  + +
Sbjct: 11  LVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIVIDE 70

Query: 295 NYTIRITDRINFDQ 308
              +R+ D ++ D 
Sbjct: 71  KLAVRVQDAMDSDN 84


>gi|170021377|ref|YP_001726331.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|188494740|ref|ZP_03002010.1| lateral flagellar export/assembly protein [Escherichia coli 53638]
 gi|169756305|gb|ACA79004.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           ATCC 8739]
 gi|188489939|gb|EDU65042.1| lateral flagellar export/assembly protein [Escherichia coli 53638]
          Length = 283

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
           (Flagellar motor switch protein fliY) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VN+   +   + ++KD+++L  G +I           +  NGK I   E+  + +
Sbjct: 208 LLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDE 267

Query: 295 NYTIRITDRINFDQKSLKNF 314
           ++ +RI D I   ++     
Sbjct: 268 SFGVRILDIIAPKERLKAEL 287


>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
           translocase SctQ) [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 445

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 34/66 (51%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           Q+ VN+   +   + ++  ++ L+ G ++    + +    L+ NGK +   EL R+G+  
Sbjct: 377 QIPVNLTVEVGRIQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVL 436

Query: 297 TIRITD 302
            +R+ +
Sbjct: 437 GVRVLE 442


>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
 gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
           C3-41]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 69/213 (32%), Gaps = 8/213 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95
            +G +            +   VDI+  S      + +   F   +V  Q   +   +   
Sbjct: 54  EVGNISFGSSATALSALLGQKVDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMN 113

Query: 96  FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + +LG       P L    LS V++ + +  +   +  ++   +   
Sbjct: 114 LLVIKQSDAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQM-MGSAATSMSTVFNKKV 172

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP----QETLLKT 209
           + SP   D  +I   +   N   ++ +  ++  + I N + S+ + ++P    Q  +   
Sbjct: 173 DISPPTIDLMNISQNEGRENIPEDDLLVKVSFRLKIGNLIDSNLMQLLPLKFSQNIVKSL 232

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
              + S +            P      Q    +
Sbjct: 233 LGETESIEEPVAATIAPEAPPITAPPVQTQAPV 265



 Score = 35.8 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 1/179 (0%)

Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
           + + K  + +  ++     +T    +P +     +          +          M   
Sbjct: 226 QNIVKSLLGETESIEEPVAATIAPEAPPITAP-PVQTQAPVMPPPAQPVYQQPEATMQQP 284

Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
                     P        +      +   N               + + +   +   K 
Sbjct: 285 VYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQVTVELGRTKR 344

Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           ++K+++ L  G +I           +  N + I   E+  + +N+ +RITD ++  ++ 
Sbjct: 345 SVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRITDVLSQAERL 403


>gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter
           youngae ATCC 29220]
 gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter
           youngae ATCC 29220]
          Length = 250

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + + +   +     T  ++ +LK+G V+        C  L ANG    S  L  +G   
Sbjct: 181 DVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTP 240

Query: 297 TIRITDRI 304
            +RI   +
Sbjct: 241 AVRIDKLL 248


>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
 gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 55  IMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND 114

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 115 KYGVRITDIITPSERMRR 132


>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
 gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
          Length = 118

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++ +D    L  TT  +K ++ L++G VI           L  N +     E+    KN
Sbjct: 36  MDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVYEKN 95

Query: 296 YTIRITDRINF 306
             IRI + ++ 
Sbjct: 96  LAIRINEILDS 106


>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
 gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
          Length = 118

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++ +D    L  TT  +K ++ L++G VI           L  N +     E+    KN
Sbjct: 36  MDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVYEKN 95

Query: 296 YTIRITDRINF 306
             IRI + ++ 
Sbjct: 96  LAIRINEILDS 106


>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
 gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
          Length = 138

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            + Q              + V +   +   K T+K+++ L  G V+           +  
Sbjct: 43  FDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMI 102

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           NG  I   E+  V   Y +RITD I   ++  +
Sbjct: 103 NGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 135


>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
 gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
          Length = 104

 Score = 41.6 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 20  EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 80  EKNLAIRINEILDS 93


>gi|239815264|ref|YP_002944174.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
 gi|239801841|gb|ACS18908.1| surface presentation of antigens (SPOA) protein [Variovorax
           paradoxus S110]
          Length = 322

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKT 251
              + L +P   +        ++        + L+  +P  +      V +   +   + 
Sbjct: 189 GGVWRLGLPHGAVAAVLASESAAAKPPLRSGDHLLPKEPLDQALADRRVALRVMLKGAEL 248

Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTI 298
            L  +  L++  V+P  H     A ++ A+G  +    LG+      I
Sbjct: 249 NLGQLQELRVDDVVPLEHLLDAPAHVVGADGGRVCDGWLGQSDGRMAI 296


>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
 gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
           DSM 12885]
          Length = 287

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 36/78 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   + T+++++ +  G V+           L  NG+ I   E+  + +
Sbjct: 208 VLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDE 267

Query: 295 NYTIRITDRINFDQKSLK 312
           N+ IRITD ++  ++  +
Sbjct: 268 NFGIRITDIVSPGERLRR 285


>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
 gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
          Length = 104

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 20  EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 80  EKNLAIRINEILDS 93


>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
 gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
 gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulovorans 743B]
          Length = 400

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTL 259
           P   + ++  + +S       ++ D           ++V ++  + L KT  ++KD+++L
Sbjct: 285 PVHNVYESKPVEVSKATFQPLRTADTKSLPNNIDLIMDVPLNISVVLGKTRKSIKDILSL 344

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I      +    +  NGK+I   E+  V +N+ +RIT  ++ + + 
Sbjct: 345 NNGSLIELDKLAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVSSEDRI 395


>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + ++ +V++   G VI           +  NGK I   E+  + +
Sbjct: 304 IADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE 363

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+T+ +N  +K 
Sbjct: 364 NFGVRVTEILNVGEKI 379


>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
 gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
           3776]
          Length = 189

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 239 NVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +D RI L +T L   +V+ L+ G V+P          +  NGK +   E+  +  N+
Sbjct: 118 DVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVLNDNF 177

Query: 297 TIRITDRINFD 307
            +RI + +  D
Sbjct: 178 CVRIAEILTQD 188


>gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 331

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 89/274 (32%), Gaps = 25/274 (9%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95
            +G +          + ++  V I        K   +  SF   ++    S     +   
Sbjct: 40  EVGNISMGTAATTLSQILNQRVTIGNPRVIVCKQEEVFKSFATPYLLVYVSFKEGLTGFN 99

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK----RTIAQISAVLNQCIS 151
            +  + N V T+   +LG      P +    LS +E   A+    + I  +   +     
Sbjct: 100 VLIITENEVATIANLMLGGDGNIPPVVE---LSELEISAAQEAMNQMIGSVCTAMTDMFG 156

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--------------MTIENVASSF 197
              + +P              T   + + V  +  +              ++++      
Sbjct: 157 IPIDITPPTITMVHDIKNASLTPLPTEQPVVVVRFDTFISNILKTTIMQILSVDAAQEEA 216

Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKD 255
             ++ +   +      +++   S+N    +       T  L++ ++  + L KT  T+++
Sbjct: 217 NYLLQKAGYMDKEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKTLSTVEE 276

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           +  L+IG+ +      + C  + A    +   +L
Sbjct: 277 LARLEIGKKLTLPLSAE-CVEIYAGDTLVGKGKL 309


>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
 gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
           winogradskyi Nb-255]
          Length = 97

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 27/79 (34%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
           F     +++V++   +      +  V+ L  G +I     E+    + AN   + S  + 
Sbjct: 17  FVATLDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVM 76

Query: 291 RVGKNYTIRITDRINFDQK 309
                 T+ +   +     
Sbjct: 77  VNRNRITVEVKQMLPRAPD 95


>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 95

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 29/74 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   +  ++ ++ L  G VI           +  NG  +   E+  V  
Sbjct: 14  LRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAKGEVVVVDD 73

Query: 295 NYTIRITDRINFDQ 308
            + +RI + I+ D+
Sbjct: 74  EFGVRILEIISSDE 87


>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 105

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V+  + +     ++ +++ L++G VI           L  N +     E+   
Sbjct: 21  EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 80

Query: 293 GKNYTIRITDRINF 306
            KN  IRI + ++ 
Sbjct: 81  EKNLAIRINEILDS 94


>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
 gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
           saanensis SP1PR4]
          Length = 100

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 238 LNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++ +D  +    ++  LK+++ L  G VI           L    + +   E+  +   
Sbjct: 19  MDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGEVVVLNGY 78

Query: 296 YTIRITD 302
           + + +T+
Sbjct: 79  FALNVTE 85


>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
 gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
          Length = 138

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            + Q              + V +   +   K T+K+++ L  G V+           +  
Sbjct: 43  FDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMI 102

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           NG  I   E+  V   Y +RITD I   ++  +
Sbjct: 103 NGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 135


>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 417

 Score = 41.6 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   K T+K+++ L  G VI           +  NGK I  CE+  + +
Sbjct: 335 ILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKCEVVVINE 394

Query: 295 NYTIRITDRINFDQKSLK 312
            + IRITD +   ++  K
Sbjct: 395 TFGIRITDIVQPGERMTK 412



 Score = 36.9 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 65/192 (33%), Gaps = 7/192 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95
            +  +          + +   V+I+           I   +    V            + 
Sbjct: 43  EIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQIRKDYPIPSVIVDVRYKAGIEGSN 102

Query: 96  FIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +  S      +++ ++G + E  P +L   S+S + + + +  +   +  ++   ++  
Sbjct: 103 LLILSQRDGAVIVDLMMGGTGENPPTELSELSISGISEAMNQM-MGSAATSMSTMFNSVV 161

Query: 155 ESSPNLEDFYDIDYLKKN---TNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTT 210
           + +P      D+     +       S+E +  I+  M +E+V  S ++ +IP        
Sbjct: 162 DITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMVVEDVIDSILVQVIPIHVAKGMV 221

Query: 211 LISLSSQNKSEN 222
              L +   S +
Sbjct: 222 GKLLGTMGGSGS 233


>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
          Length = 414

 Score = 41.6 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 80/282 (28%), Gaps = 28/282 (9%)

Query: 43  KKFLPKIFKEKMDLD---VDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNFFIG 98
            +FL               +I+    Q+ + + ++ +   +  +            F   
Sbjct: 129 SEFLGMGIDISTPTPYILSEINIADLQNYEQTDMVAAINFDLTIDGVIKSE-----FISV 183

Query: 99  CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
              +L  TL + ++G    T P+      +             +        +T    + 
Sbjct: 184 LDIDLAATLADRMIGG--ATSPEPIVTEPAPAPAPQPVPQAEPVQQAAPVQQATPVPQAT 241

Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTI---NMNMTIENVASSFVLIIPQETLLKTTLISLS 215
            +     +              V  +   +M             + P     +     + 
Sbjct: 242 PMPQVAPVQQAAPVPQAAPMPQVAPVPQADMYAQQGYYGYPNPAMNP-AMYGQPVQPVMQ 300

Query: 216 SQNKSENQSEDLID------PFARKTYQ-----LNVNIDTRINLKKTT--LKDVVTLKIG 262
            Q     ++  L        P   +  +     ++V +   + +  T   +KD++    G
Sbjct: 301 PQPAVNYRNAQLAQFESFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFSQG 360

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            +I    +      +  NG  I   ++  +  N+ +RIT+ +
Sbjct: 361 TIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIV 402


>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 103/340 (30%), Gaps = 67/340 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  VDI+  +    +   +   F +       +    +    
Sbjct: 46  EIGNISFGSSATALSTLLNQKVDITTPTVSIIEKDKLQDEFPQPYVAIQVSYTEGFLGTN 105

Query: 96  FIGCSNNLVITLLENLLGASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + +LG     T   L    LS V++ + +  +   +  ++   S   
Sbjct: 106 LLVIKQDDASIIADLMLGGDGLNTGTDLGEIQLSAVQEAMNQM-MGSAATSMSTIFSKKV 164

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP----------- 202
           + SP + D   +   +   N    + +  I+  M I   + S+ + ++P           
Sbjct: 165 DISPPIIDLMYLPEGEGVENIPDIDLLVKISFKMKIGTLIDSNMMQLVPLSFAKSLVEDL 224

Query: 203 ---------QETLLKTTLISLSSQNKSENQSEDLIDPFARKT------------------ 235
                    +   ++      S    +  Q      PF                      
Sbjct: 225 TNNNNTNATKSDKIEEEPPKPSMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVN 284

Query: 236 -----------------------YQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHR 270
                                    L++ +   + L +T  ++K+++ L  G +I     
Sbjct: 285 VQPAEFASFGQPALQESEARNLNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKL 344

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +  N + I   E+  + +N+ +R+TD ++  ++ 
Sbjct: 345 AGEPVDILVNNRLIAKGEVVVIDENFGVRLTDIVSQTERI 384


>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
 gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
          Length = 105

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++++D    L  TT+   +++  + G VI           L  N +     E+    KN
Sbjct: 23  MDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVYEKN 82

Query: 296 YTIRITDRINF 306
             IRI + ++ 
Sbjct: 83  LAIRINEILDS 93


>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
 gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
          Length = 246

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
           ++A L   +     +                 + ++  FV      + +E       L++
Sbjct: 84  LAAALQPSLDAAATALGARSGAARQVDPDTVVDEIAEPFVI-----VPLEGSDVVAALLV 138

Query: 202 PQETLLKTTLISLSSQNKSENQSE-DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           P+  L      + +    S      D           + V ++  I   + T+++++ L 
Sbjct: 139 PEALLAHPADDTPALPTTSAAAPTGDRRGIEMLHGVDMEVTVE--IGRARMTVRELLDLA 196

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            G V+       + A L  NG+ I   E+  + +++ +RIT+ +
Sbjct: 197 PGAVLELDRAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIV 240


>gi|256020211|ref|ZP_05434076.1| surface presentation of antigens (SPOA) protein [Shigella sp. D9]
 gi|260853450|ref|YP_003227341.1| putative lateral flagellar export/assembly protein [Escherichia
           coli O26:H11 str. 11368]
 gi|260866396|ref|YP_003232798.1| putative lateral flagellar export/assembly protein [Escherichia
           coli O111:H- str. 11128]
 gi|300817289|ref|ZP_07097507.1| surface presentation of antigens protein [Escherichia coli MS
           107-1]
 gi|307315214|ref|ZP_07594793.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|331666529|ref|ZP_08367403.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA271]
 gi|332281373|ref|ZP_08393786.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|257752099|dbj|BAI23601.1| predicted lateral flagellar export/assembly protein [Escherichia
           coli O26:H11 str. 11368]
 gi|257762752|dbj|BAI34247.1| predicted lateral flagellar export/assembly protein [Escherichia
           coli O111:H- str. 11128]
 gi|300530265|gb|EFK51327.1| surface presentation of antigens protein [Escherichia coli MS
           107-1]
 gi|306905395|gb|EFN35932.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           W]
 gi|315059471|gb|ADT73798.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
 gi|323158011|gb|EFZ44112.1| lateral flagellar export/assembly protein [Escherichia coli
           EPECa14]
 gi|323178512|gb|EFZ64090.1| lateral flagellar export/assembly protein [Escherichia coli 1180]
 gi|323181529|gb|EFZ66949.1| lateral flagellar export/assembly protein [Escherichia coli 1357]
 gi|323379971|gb|ADX52239.1| surface presentation of antigens (SPOA) protein [Escherichia coli
           KO11]
 gi|331065753|gb|EGI37637.1| putative surface presentation of antigens (SPOA) protein
           [Escherichia coli TA271]
 gi|332103725|gb|EGJ07071.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 283

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
 gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
            + Q              + V +   +   K T+K+++ L  G V+           +  
Sbjct: 43  FDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMI 102

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           NG  I   E+  V   Y +RITD I   ++  +
Sbjct: 103 NGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 135


>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
 gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
          Length = 84

 Score = 41.2 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +  ++   +  +++V+ L  G V+           L  N + +   E+  V  
Sbjct: 9   VLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVVVED 68

Query: 295 NYTIRITDRINFDQ 308
           N+ I+IT+ +  ++
Sbjct: 69  NFGIKITELVGSEK 82


>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
 gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
          Length = 135

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 55  IMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND 114

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 115 KYGVRITDIITPSERMRR 132


>gi|167574618|ref|ZP_02367492.1| hypothetical protein BoklC_32595 [Burkholderia oklahomensis C6786]
          Length = 324

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 18/172 (10%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E++ A++    +  V   CI       P      D    +   +          ++   
Sbjct: 161 TERRFARKVATNLVRVTAHCID------PAATRADDAPIPRAAAHSRHPVLFVACDVEDA 214

Query: 190 IENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +          +    Q+ L             +  Q   L            + +  ++
Sbjct: 215 LRRTVGEIQFALDEGWQQRLFAGLTAGQRRGAPARKQPRLLAGALR-------IRLTAQL 267

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
             ++    D++ LK G V+P         +  A   ++YS  +        +
Sbjct: 268 MERRIPFGDLLHLKPGSVLPVRLHANARVL--AGDSQLYSASIVEHNGKLCL 317


>gi|283834474|ref|ZP_06354215.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220]
 gi|291070021|gb|EFE08130.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220]
          Length = 287

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 62/210 (29%), Gaps = 36/210 (17%)

Query: 93  SNFFIGCSNNLVITLLENLLG---------ASHETIPQLYNRSLSTVEKKLAKRTIAQ-- 141
            +        L++ LL N  G         +  +   +   R  S +   ++     +  
Sbjct: 76  GHLAFDIDRALLLMLLGNFYGLTSSLADEKSQDDLPTKTETRLRSRLALDISNIIFNKNI 135

Query: 142 --ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
             I   L    ST Q        F   D                 +  + +++  + ++L
Sbjct: 136 SGIPLTLKPDSSTVQTHWAYQLTFVLGDEEN-------------CSFRILLDDSHTDYIL 182

Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVV 257
            + + +           + + +  S +       K     + +   + + +  L   D+ 
Sbjct: 183 NLIRRS------EHGEKKKQIDKASAEARKKTLIKEIIHTLPLTMNVKIAEIPLNVADLT 236

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSC 287
           T+K G ++P    +           E+++ 
Sbjct: 237 TIKPGDILPIAMPDTFPV--YIGKSELFNA 264


>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
 gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
           2489]
          Length = 408

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T  T+KD++ L  G +I           +  N K I   E+  + +N
Sbjct: 330 MDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDEN 389

Query: 296 YTIRITDRINF 306
           + +R+T+ +  
Sbjct: 390 FGVRVTEILPA 400


>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
 gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N+
Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENF 375

Query: 297 TIRITDRINFDQKSLK 312
            +RITD I+   +  +
Sbjct: 376 GVRITDIISQSDRLTR 391



 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 22/221 (9%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  S    + + +   F +                 
Sbjct: 42  EIGNISFGSSATALSMLLNQKVEITTPSVSMIERTSVADEFPQPYVAIQVNYTEGLLGTN 101

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         + + +LG          +  L  ++    +  + Q+    +  ++    
Sbjct: 102 LLVIKQKDAAIIADLMLGGDGTA----ADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFG 157

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              + SP      D+   K        +F+  ++  + I               L+ +++
Sbjct: 158 KRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGE-------------LIDSSI 204

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + L   + ++     L+     +     VN+ +  + +  +
Sbjct: 205 MQLLPVDFAKELVAQLLGSPLEEPGAAEVNLKSSADARPFS 245


>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
           capsulatum ATCC 51196]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 49/162 (30%), Gaps = 7/162 (4%)

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT---INMNMTIENVASSFVLIIPQETL 206
           +     + P  E    I+   +        +V     + + M +    S      P+   
Sbjct: 82  LQDVLAAMPMAEPPAQIEPTARPQGVPVTPYVLRAGSLAVRMAMICELSEKAAKAPETA- 140

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
                 + +S  +    +             + V+   R   ++  +++++    G V+ 
Sbjct: 141 ---ARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIRELLETGPGDVLE 197

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
                     L    K +   E+  V  N+ +R+T+     +
Sbjct: 198 LDRHITDPVDLVVGDKIVARGEVVLVNGNFGLRVTEVAEPKK 239


>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
 gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. C56-T3]
          Length = 393

 Score = 41.2 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N+
Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENF 375

Query: 297 TIRITDRINFDQKSLK 312
            +RITD I+   +  +
Sbjct: 376 GVRITDIISQSDRLTR 391



 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 22/221 (9%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  S    + + +   F +                 
Sbjct: 42  EIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEGLLGTN 101

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         + + +LG          +  L  ++    +  + Q+    +  ++    
Sbjct: 102 LLVIKQQDAAIIADLMLGGDGTA----ADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFG 157

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              + SP      D+   K        +F+  ++  + I               L+ +++
Sbjct: 158 KRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGE-------------LIDSSI 204

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + L   + ++     L+     +     VN+ +  + +  +
Sbjct: 205 MQLLPVDFAKELVAQLLGSPLEEPGAAEVNLKSSADARPFS 245


>gi|289806090|ref|ZP_06536719.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 74

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             S ++ ++  D   R+     + +          L  ++ LK G V+P     
Sbjct: 3   ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPA 56


>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
 gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
          Length = 96

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 35/75 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V +   I   + +L++++ L    VI    +      +  NG  I   E+  VG 
Sbjct: 21  LQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVVTVGD 80

Query: 295 NYTIRITDRINFDQK 309
            + +R+T+ +N D++
Sbjct: 81  RFGVRMTELVNPDKR 95


>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
 gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 97

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E Q+    D   R    L+V ++  + L +   T++D++ L  G VI           + 
Sbjct: 2   EAQTPRNGDSTRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            NG+ +   E   V   + +RITD ++  ++  +
Sbjct: 62  VNGRLVARGEAVVVNDKFGVRITDIVSPQERIQR 95


>gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 282

 Score = 41.2 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 32/102 (31%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
                  +  +      + + P       + + +       +  +KDV+ L  G ++   
Sbjct: 177 PEAAPEDAGGEPHTVKRNDMPPTMELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELN 236

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                   +  N   I   E+  V  NY +RI   +N   + 
Sbjct: 237 RGVNEPVEVLVNHCLIARGEVVVVEGNYGVRIQQIVNRQDRL 278


>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
 gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
 gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
 gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
          Length = 98

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 222 NQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           + +  L D    +  +L     V +   +   + T++D++ L  G V+           +
Sbjct: 3   DATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDV 62

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             NG  I   E+  VG+ + IR    I  +++
Sbjct: 63  LVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 94


>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17029]
          Length = 98

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 222 NQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           + +  L D    +  +L     V +   +   + T++D++ L  G V+           +
Sbjct: 3   DATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDV 62

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             NG  I   E+  VG+ + IR    I  +++
Sbjct: 63  LVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 94


>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
 gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
          Length = 128

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 27/73 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +   +  L +++  + G +I           +  N + +   E+    +
Sbjct: 41  LLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVYER 100

Query: 295 NYTIRITDRINFD 307
           N  IRI + ++ +
Sbjct: 101 NLAIRINEILDSN 113


>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 114

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 30/83 (36%)

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           ++L          + V   + +     TL +++ L+ G VI              N + I
Sbjct: 21  KELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNRRII 80

Query: 285 YSCELGRVGKNYTIRITDRINFD 307
              E+    KN  IRI + ++  
Sbjct: 81  GKGEVMVYEKNLAIRINEVLDSS 103


>gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 271

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
             +        +++ + +   +  +       L   L++  ++       E + +PF + 
Sbjct: 147 EPAQGTGLYATIDVNLNDHQGTIHVK------LDELLVATLTEQLDLQPKESMYEPFCQS 200

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
                V ++  ++ K   L ++++L+   V+P           S   + ++S  +     
Sbjct: 201 LASTPVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPV--SIGQEHLFSGRVAENDG 258

Query: 295 NYTIRITDRINFDQKS 310
              +     +N D++S
Sbjct: 259 QLVL----ILNQDKES 270


>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
 gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
          Length = 136

 Score = 41.2 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 56  IMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND 115

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 116 KYGVRITDIITPSERMRR 133


>gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 299

 Score = 40.8 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           L      + Q  +      +   QL V++D  +  K+ TL  +  L  G+V+      + 
Sbjct: 204 LEMGQMQDIQETE--QHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEK 261

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304
              + ANG  I   EL ++  +  + IT+ +
Sbjct: 262 RTEIRANGALIGYGELVQLDNSLGVEITEWV 292


>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
 gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
           ictaluri 93-146]
          Length = 137

 Score = 40.8 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND 116

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 117 KFGVRITDIITPSERMRR 134


>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
 gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC3088]
          Length = 102

 Score = 40.8 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 226 DLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           D    F  +  Q + VNI   +   K  +KD++ LK G V+           L  N   +
Sbjct: 14  DRESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVV 73

Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310
              E+  V + Y +R+T+ I  + + 
Sbjct: 74  AQGEVVLVNERYGVRLTNVIPSEDRI 99


>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 103

 Score = 40.8 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ +   + +     +L +++ L  G V+    +      +  NGK I   E+  V   
Sbjct: 25  SDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANELLDVVVNGKLIAKGEVVTVNGR 84

Query: 296 YTIRITDRINFDQKSLKN 313
           + +RI D ++ +  S+ +
Sbjct: 85  FGVRIVDVVSNENNSVGD 102


>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 122

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 239 NVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ ++  I +      L++++ L    ++           +  NGK +   +L  + +NY
Sbjct: 44  DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRENY 103

Query: 297 TIRITDRINFDQKS 310
            I+IT  I  +++ 
Sbjct: 104 GIKITQIITPEERM 117


>gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni
           M1]
          Length = 123

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  RI  KK  LKDV+T+ IG V+           +    K I   E+  V  
Sbjct: 44  IMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDG 103

Query: 295 NYTIRITDRINFDQKSLKNF 314
           N+ ++IT+ I   ++ L+  
Sbjct: 104 NFGVQITE-IGSKKERLEQL 122


>gi|167567194|ref|ZP_02360110.1| hypothetical protein BoklE_31835 [Burkholderia oklahomensis EO147]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 18/172 (10%)

Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
            E++ A++    +  V   CI       P      D    +   +          ++   
Sbjct: 178 TERRFARKIATNLVRVTTHCID------PAAMRADDAPIPRAAAHSRHPVLFVACDVEDA 231

Query: 190 IENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
           +          +    Q+ L             +  Q   L            + +  ++
Sbjct: 232 LRRTVGKIQFALDEGWQQRLFAGLTAGQRRGAPARKQPRPLAGALR-------IRLTAQL 284

Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
             ++    D++ LK G V+P         +  A   ++YS  +        +
Sbjct: 285 MERRIPFGDLLHLKPGSVLPVRLHANARVL--AGDSQLYSASIVEHNGKLCL 334


>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
 gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
          Length = 137

 Score = 40.8 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
               +   L   ++   S  Q  DL          + V +   +   K T+K+++ L  G
Sbjct: 32  HSGDIFQNLEEGATLGSSAGQDIDL-------ILDIPVKLTVELGRTKMTIKELLRLSQG 84

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   + +RITD I   ++  +
Sbjct: 85  SVVSLDGLAGEPLDVLINGYLIAQGEVVVVNDKFGVRITDIITPSERMRR 134


>gi|218703508|ref|YP_002411027.1| lateral flagellar motor switch C-ring FliM-like protein
           [Escherichia coli UMN026]
 gi|293403339|ref|ZP_06647430.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378950|ref|ZP_06988831.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302]
 gi|300898058|ref|ZP_07116427.1| surface presentation of antigens protein [Escherichia coli MS
           198-1]
 gi|59889764|emb|CAH19119.1| Lateral flagellar export/assembly protein (FliM-like) [Escherichia
           coli]
 gi|218430605|emb|CAR11471.1| Lateral flagellar export/assembly protein Flagellar motor switch
           C-ring (FliM-like) [Escherichia coli UMN026]
 gi|284920028|emb|CBG33084.1| lateral flagellar export/assembly protein (FliM-like) [Escherichia
           coli 042]
 gi|291429192|gb|EFF02212.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280063|gb|EFI21567.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302]
 gi|300358236|gb|EFJ74106.1| surface presentation of antigens protein [Escherichia coli MS
           198-1]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 81/245 (33%), Gaps = 27/245 (11%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
            LL N  G        + +N   +  E +L  R    I  ++    ++       L+   
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 165 DIDYLKKN-TNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKSEN 222
            I +     T  L+++     +  + +++  + F+L +I      K   ++ S    +  
Sbjct: 149 VITHWAYQLTFTLADD--EESSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPAL- 205

Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
                          L + ++ +I      + D+  +K G ++P    E           
Sbjct: 206 --------IKEIIRSLPLTLNVKIAELSLNVADLTQIKAGDILPISLGETFPVA--IGQS 255

Query: 283 EIYSC 287
           E++S 
Sbjct: 256 ELFSA 260


>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
 gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
           str. Eklund]
          Length = 388

 Score = 40.8 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 105/336 (31%), Gaps = 66/336 (19%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            +   V+I+     +     + ++F+           S      
Sbjct: 50  EIGNISMGSASTALSTIIGSAVNITTPQVSTTTLKELRNTFEVPNIALEVKYTSGIVGGN 109

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         +   ++G       +     L+ +E+      + Q+    +  +     
Sbjct: 110 LLVMKIPDAAVIANLMMGGDGRIEEKSE---LTEIEESAVSEAMNQMIGSAATSMATMFG 166

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP +   +       +      E +  ++  +TI ++  S+ + I+P +T  K  
Sbjct: 167 REVNISPPVSKIWRDTSKPLSETISEEEEIVEVSFKLTIGDLVDSNIMQILPIKTAKKIV 226

Query: 211 LISLSSQNKSE------------NQSEDLIDPFARKTY---------------------- 236
            I +  + K E             Q ++  +   +                         
Sbjct: 227 SIMMGEEEKQEVPQSNIHQQGEREQVQNSQEQLNKNVVPKPVETYSQPQVSSPQPQVNIQ 286

Query: 237 ---------------------QLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273
                                 L+V ++  + L KT  ++K+V+ L  G +I      + 
Sbjct: 287 KATFAPLGESPINGAPQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIELDKLAEE 346

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +  NGK+I   E+  V +N+ +RI + ++ +++
Sbjct: 347 PVEIYVNGKKIAYGEVVVVDENFGVRIMNIVSGEER 382


>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 353

 Score = 40.8 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   K  +KD++ L  G +I           L  NGK I   E+  + +
Sbjct: 273 LMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 332

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+TD ++   + 
Sbjct: 333 NFGVRVTDIVSPIDRI 348


>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T   +++++ L  G +I           +  NGK I   E+  + +N
Sbjct: 344 MDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDEN 403

Query: 296 YTIRITDRINFDQKS 310
           + IRIT+ I+  ++ 
Sbjct: 404 FGIRITEIISPVERI 418


>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 353

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   K  +KD++ L  G +I           L  NGK I   E+  + +
Sbjct: 273 LMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 332

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+TD ++   + 
Sbjct: 333 NFGVRVTDIVSPIDRI 348


>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 354

 Score = 40.8 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +   K  +KD++ L  G +I           L  NGK I   E+  + +
Sbjct: 274 LMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 333

Query: 295 NYTIRITDRINFDQKS 310
           N+ +R+TD ++   + 
Sbjct: 334 NFGVRVTDIVSPIDRI 349


>gi|301646793|ref|ZP_07246647.1| surface presentation of antigens protein [Escherichia coli MS
           146-1]
 gi|301075028|gb|EFK89834.1| surface presentation of antigens protein [Escherichia coli MS
           146-1]
          Length = 283

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 40  LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMISQV----GHLAFDIDRSLLL 88

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 89  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAYTDFILNLIRHSEHSKPQQVAKSVNKPA 204

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 254 QSELFSA 260


>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
 gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
           ATCC 21756]
          Length = 83

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   +NV I   +      ++ ++ +  G VIP   +      + AN   I   E+   
Sbjct: 2   TQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQIS 61

Query: 293 GKNYTIRITDRIN 305
                I++T   +
Sbjct: 62  DDRIAIQVTRAAD 74


>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 390

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/367 (9%), Positives = 105/367 (28%), Gaps = 67/367 (18%)

Query: 3   GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
             ++  ++  +  +L       LG+          +G +          E ++  V I+ 
Sbjct: 31  QATLPPDSGEMSTLLTDEEKDALGE----------IGNISMGSASTTLSELLNQKVSITS 80

Query: 63  TSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
              +    + +  SF+  ++  +       +    +    +    +   ++G    T+ +
Sbjct: 81  PRVRVMTKTELFDSFEVPYLVIKVDFSEGLNGYNLLIIRLSDAAVMASLMMGGDGTTMSE 140

Query: 122 LYNR------------------------------------------------SLSTVEKK 133
             +                                                     +E+ 
Sbjct: 141 EISELEISAAAEAMNMMIGTAATSLSQMFHRPINISPPQTNLLKTKSDPLVHPPEQIEET 200

Query: 134 LAKRTIA-QISAVLNQCISTTQESSPNLED----FYDIDYLKKNTNRLSNEFVTTINMNM 188
           +   + + +I  +++  I          E+      DI  L ++                
Sbjct: 201 IVVVSFSLKIGDLVDTDIMQIMGVETAKEEANLLLMDIMGLAQDETPAPETAPAGAANAN 260

Query: 189 TIENVASSFVLI-IPQETL-LKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNIDTR 245
            +     +      P   +     +   S +     Q+   ++    +    + + +   
Sbjct: 261 PVSPPVGNMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDIPLKVSVV 320

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   K  +KDV+ +  G V+           +  NG  + + E+  V +N+ +RIT+ I+
Sbjct: 321 LGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNENFGVRITNIIS 380

Query: 306 FDQKSLK 312
             ++  +
Sbjct: 381 PMERIKR 387


>gi|315616845|gb|EFU97462.1| lateral flagellar export/assembly protein [Escherichia coli 3431]
 gi|323171043|gb|EFZ56692.1| lateral flagellar export/assembly protein [Escherichia coli LT-68]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%)

Query: 46  LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
           L   F +K   ++ +    C+       +    +N     + +     +       +L++
Sbjct: 6   LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMISQV----GHLAFDIDRSLLL 54

Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161
            LL N  G        + +N   +  E +L  R    I  +   L       +    +  
Sbjct: 55  MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 114

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220
                 Y    T     E        + +++  + F+L +I      K   ++ S    +
Sbjct: 115 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 170

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
                            L + ++ +I      + D+  +K G ++P    E         
Sbjct: 171 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 219

Query: 281 GKEIYSC 287
             E++S 
Sbjct: 220 QSELFSA 226


>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
 gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
           43160]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 13/179 (7%)

Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
           R   ++S  +   +S     +        +D        L     T   + +  E+    
Sbjct: 60  RLSGEVSGDVVLVVSAEVVDALANSPVGPMDVATALRPALEAAAATLGRVRVDAEHTEDP 119

Query: 197 -----------FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
                        + +P      T    L+ Q                +   + V ++  
Sbjct: 120 DTAMDGLRDKGMFVAVPLLAGGGTVEAVLALQVTLPQARTQRGSLDLLRHVAMEVTVE-- 177

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           I   + T+ ++++L  G+V+         A L  NG  I   E+  V +++ +RI++ +
Sbjct: 178 IGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVVDEDFGLRISEIV 236


>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
 gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
          Length = 411

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 14/207 (6%)

Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--------NQCISTTQESSPNLE 161
           NLL +  +       +    +E  +   +       L            +  +E+   L+
Sbjct: 198 NLLRSKGD----PLAQPPQDIEDVIVVVSFDMKIGDLVDTEIMQIMSVETAKEEAHLLLK 253

Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISLSSQNKS 220
           D       +     +  E  T+       ++  S     I+ QET    T          
Sbjct: 254 DIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGIMMQETAPPPTPAMPPQAAPI 313

Query: 221 ENQSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           +  S   ++         + + +   +   K  +KDV+ +  G V+           +  
Sbjct: 314 KQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILV 373

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINF 306
           NG  + + E+  V +N+ IRIT+ I+ 
Sbjct: 374 NGTLVATGEVVVVNENFGIRITNIISP 400


>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
 gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
          Length = 175

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K ++ L  G VI           +  NG  I   E+  V  
Sbjct: 95  IMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVDD 154

Query: 295 NYTIRITDRINFDQK 309
            Y IRIT+ I   ++
Sbjct: 155 KYGIRITEIITPSER 169


>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
           17025]
          Length = 98

 Score = 40.8 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 222 NQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           + +  L +    +  +L     V +   +   + T++D++ L  G V+           +
Sbjct: 3   DTARPLTERLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDV 62

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
             NG  I   E+  VG+ + IR    I  +++
Sbjct: 63  LVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 94


>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
 gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
          Length = 410

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95
            +G +            +   VDI+  S      + +   F   +V  Q   +   +   
Sbjct: 54  EVGNISFGSSATALSALLGQKVDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMN 113

Query: 96  FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + +LG       P L    LS V++ + +  +   +  ++   +   
Sbjct: 114 LLVIKQSDAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQM-MGSAATSMSTVFNKKV 172

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           + SP   D  +I   +   N   ++ +  ++  + I N
Sbjct: 173 DISPPTIDLMNISQDEGRENIPEDDLLVKVSFRLRIGN 210



 Score = 35.8 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ +   + L +T  ++K+++ L  G +I           +  N + I   E+  + +N
Sbjct: 332 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDEN 391

Query: 296 YTIRITDRINFDQKS 310
           + +RITD ++  ++ 
Sbjct: 392 FGVRITDVLSQAERL 406


>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
 gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
 gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC61]
 gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y412MC52]
          Length = 393

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N+
Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENF 375

Query: 297 TIRITDRINFDQKSLK 312
            +RITD I+   +  K
Sbjct: 376 GVRITDIISQSDRLTK 391



 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 22/221 (9%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  S    + + +   F +                 
Sbjct: 42  EIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEGLLGTN 101

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         + + +LG          +  L  ++    +  + Q+    +  ++    
Sbjct: 102 LLVIKQQDAAIIADLMLGGDGTA----ADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFG 157

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
              + SP      D+   K        +F+  ++  + I               L+ +++
Sbjct: 158 KRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGE-------------LIDSSI 204

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
           + L   + ++     L+     +     VN+ +  + +  +
Sbjct: 205 MQLLPVDFAKELVAQLLGSPLEEPGAAEVNLKSSADARPFS 245


>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 127

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 27/68 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + V++   +     T+++ ++L  G VI           +  NG ++   E+  +
Sbjct: 45  EYLDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVI 104

Query: 293 GKNYTIRI 300
              + +RI
Sbjct: 105 NDLFVLRI 112


>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
 gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
          Length = 407

 Score = 40.8 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 3/158 (1%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95
            +G +            +   VDI+  S      + +   F   +V  Q   +   +   
Sbjct: 54  EVGNISFGSSATALSALLGQKVDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMN 113

Query: 96  FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +    +    + + +LG       P L    LS V++ + +  +   +  ++   +   
Sbjct: 114 LLVIKQSDAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQM-MGSAATSMSTVFNKKV 172

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
           + SP   D  +I   +   N   ++ +  ++  + I N
Sbjct: 173 DISPPTIDLMNISQNEGRENIPEDDLLVKVSFRLRIGN 210



 Score = 35.8 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ +   + L +T  ++K+++ L  G +I           +  N + I   E+  + +N
Sbjct: 329 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDEN 388

Query: 296 YTIRITDRINFDQKS 310
           + +RITD ++  ++ 
Sbjct: 389 FGVRITDVLSQAERL 403


>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 112

 Score = 40.4 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
              +S    E +     R    ++V++   +   +  ++D++ L  G VI          
Sbjct: 15  PGAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPL 74

Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            + ANG  I   E+  VG+ + IR ++ +  +++ 
Sbjct: 75  DILANGTMIAKGEVVMVGERFGIRFSEIVAPEKRM 109


>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
           CMR15]
          Length = 132

 Score = 40.4 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++   +   +     T+ +++  K  QV+    +      L   GK +   +L  V +++
Sbjct: 60  RVKAQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDEHF 119

Query: 297 TIRITD 302
            +RIT+
Sbjct: 120 GVRITE 125


>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
 gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
          Length = 226

 Score = 40.4 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 239 NVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           NV +D  I L +T L  ++V+ +K G V+P          +  NG+ I   E+  +  N+
Sbjct: 155 NVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLNDNF 214

Query: 297 TIRITDRINFD 307
            +R+ + I+ +
Sbjct: 215 CVRVAEIISPE 225


>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
 gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
           DSM 10411]
          Length = 95

 Score = 40.4 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 239 NVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ +    +L   +  +KD++  K G +I           ++   K +   E+  +   +
Sbjct: 17  DIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLGMGEVIVLDNKF 76

Query: 297 TIRITDRINFDQ 308
            IRIT+    D 
Sbjct: 77  AIRITNIFTKDD 88


>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
 gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
          Length = 133

 Score = 40.4 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 53  IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 113 KYGVRITDIITPSERMRR 130


>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
 gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + V +   +   +  LKDV+ +  G V+P          ++ANG+ +   E+      +
Sbjct: 13  DVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQDGRF 72

Query: 297 TIRITDRIN 305
            +RI + + 
Sbjct: 73  ALRIVELVG 81


>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
 gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
          Length = 116

 Score = 40.4 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            SS   +   S D+     R    + VN+   +   +  + D++ + +G VI        
Sbjct: 20  PSSDAPAPVSSNDM-----RFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGE 74

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
              +  NG  +   E+  V   Y +R+ + ++ ++  L+  
Sbjct: 75  PMDVRVNGTLLGHAEVVVVNNKYGLRLVNVVD-EKDMLRGL 114


>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
 gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            NV +   + +     TL+D++ L  G V+           +  NG  I   E+  VG+ 
Sbjct: 25  ANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVVVVGEK 84

Query: 296 YTIRITDRINFDQKS 310
           + IR  D ++  Q+ 
Sbjct: 85  FGIRFGDIVDPRQRI 99


>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
 gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
           98-5489]
          Length = 119

 Score = 40.4 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V     +   K  LK+++  + G +I           +  NG+ +   E+    K
Sbjct: 33  LLDMKVLFHAELGSTKIALKEILQFEKGSIIDLQKPAGESVEIYINGRIVGKGEVMVYEK 92

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 93  NLAIRVNEVLDSN 105


>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
 gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
          Length = 401

 Score = 40.4 bits (93), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQ 263
           + +   +  +S    E  S    +        L++ ++  + L +T  ++KD++ L  G 
Sbjct: 292 VEQPVQVQPASFTNFEQPSMSKPESKNLDML-LDIPLNVTVELGRTNRSVKDILELSSGS 350

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           +I           +  N + I   E+  + +N+ +RITD ++   + 
Sbjct: 351 IIELDKLAGEPVDVLVNSRLIAKGEVVVIDENFGVRITDIVSQSDRL 397



 Score = 36.2 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 69/200 (34%), Gaps = 11/200 (5%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+       + S I   F              +S   
Sbjct: 48  EIGNISFGSSATALSTLLNQKVEITTPKVSIQERSRIEEDFPHPYVAIQVQYTEGFSGAN 107

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +    +    + + +LG             L  ++    +  + Q+    +  ++   S
Sbjct: 108 LLVIKQDDAAIIADLMLGGDGLNPSGD----LGEIQVSAVQEAMNQMMGSAATSMSTVFS 163

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
              + SP   D   +   +       ++ +T I+ ++ + N + S+ + ++P     K  
Sbjct: 164 KKVDISPPRVDMLYLPEGEGADAIPHDDLLTKISFSLKVGNLIDSNIMQLLPLG-FAKQL 222

Query: 211 LISLSSQNKSENQSEDLIDP 230
           +  L++ N + + + D+++ 
Sbjct: 223 VDELTNNNDASSTNSDIMEQ 242


>gi|296282259|ref|ZP_06860257.1| hypothetical protein CbatJ_01495 [Citromicrobium bathyomarinum
           JL354]
          Length = 298

 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 75/274 (27%), Gaps = 23/274 (8%)

Query: 32  EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
            ++ + L    +     +F  +      +   SC          +       ++ +L   
Sbjct: 34  ARLGTRLARALQPRFAALFDTRKLEVELVDTASCAGDALGE---TLGSGMHHARFALPVK 90

Query: 92  SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV-LNQCI 150
                +      +I   + +LG   +       R+L     + +++   ++ A       
Sbjct: 91  GLGILVSAKIGALIGEFDRMLGGDGDAPE--DARALPASADRFSRQIEGEVLAACAEASG 148

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI----NMNMTIENVASSFVLIIPQETL 206
                ++       +I             F  +        +TI    ++FV    +  +
Sbjct: 149 RDDLAAAARGTVLREIVPSSAQAPVHLATFAVSRPDTPKFMLTIAVCETTFVQFAGEAPV 208

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
            K    +L       +       P A     + +     +      L  +  L++G ++P
Sbjct: 209 GKPVRRTLGELPLDRS-------PLAH----VEMTATATLVDMTLPLHRIAGLQVGTLLP 257

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
                     LS     I    +G +     + I
Sbjct: 258 VSI--HRSVPLSIADITIALGAVGALDDRVALEI 289


>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
           [Edwardsiella tarda EIB202]
 gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
          Length = 137

 Score = 40.4 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND 116

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 117 KFGVRITDIITPSERMRR 134


>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
 gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Selenomonas sputigena ATCC 35185]
          Length = 394

 Score = 40.4 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  T+KD++ L  G ++           +  NGK +   E+  + +N
Sbjct: 316 LDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDEN 375

Query: 296 YTIRITDRINFDQK 309
           + +RITD ++  ++
Sbjct: 376 FGVRITDIVSPAER 389


>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 381

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKT 273
            Q+  E  S +  +        L+V +   + L +T   +KD++ L  G +I        
Sbjct: 281 FQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGE 340

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              + ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 341 PVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 377


>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
 gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. G11MC16]
          Length = 394

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N+
Sbjct: 317 DVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENF 376

Query: 297 TIRITDRINFDQKSLK 312
            +RITD ++ + +  +
Sbjct: 377 GVRITDIVSQNDRLKR 392


>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
 gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
          Length = 138

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K +++L  G V+           +  NG  I   E+  V  
Sbjct: 58  IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117

Query: 295 NYTIRITDRINFDQKSLK 312
           NY IRITD I   ++  +
Sbjct: 118 NYGIRITDIITPSERMRR 135


>gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 324

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 65/266 (24%), Gaps = 65/266 (24%)

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
             L +      +     LV+ +++ + G      P     SL+ VE    +         
Sbjct: 66  LDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAA---SLTPVEVTALELLALAALDG 122

Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
                   +  SP L                       + + +T         L++P   
Sbjct: 123 ACGVAELEERLSPRLAR------ADAEP-----AGALAVELEVTAGPARGRARLLLPPAA 171

Query: 206 L--------LKTTLISLSSQNKSENQSE----DLIDP----------------------- 230
           +        L   L    S  +          D ++P                       
Sbjct: 172 VRALRGPAELDRQLPMPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLR 231

Query: 231 ----------------FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                            A +  QL V ++  +      L +V  L+ G V+      +  
Sbjct: 232 ALGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGL 291

Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300
             L    + I   EL  V     +RI
Sbjct: 292 VTLRLGERAIARGELVDVEGAVGVRI 317


>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 393

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N+
Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENF 375

Query: 297 TIRITDRINFDQKSLK 312
            +RITD ++ + +  +
Sbjct: 376 GVRITDIVSQNDRLKR 391


>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
 gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V +
Sbjct: 106 IMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDE 165

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IR+TD I    +  +
Sbjct: 166 KYGIRVTDIITPSDRISR 183


>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Halanaerobium praevalens DSM 2228]
          Length = 417

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 239 NVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V ++  + L K    ++D++ L  G +I           L  NGK +   E+  + +N+
Sbjct: 341 DVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVVVIDENF 400

Query: 297 TIRITDRINFDQKS 310
             R+ D I+  ++ 
Sbjct: 401 GFRVKDIISPAERL 414



 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 9/143 (6%)

Query: 58  VDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNFFIGCSNNLVITLLENLLGASH 116
           V+I+    +   F  +I  + +  V  +   +        +         + + ++G   
Sbjct: 74  VEITTPEVEVQTFKQLIEEYDKPCVLVKVEYVEGIEGLSLLVIDTKDAAVIADLMMGGDG 133

Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES----SPNLEDFYDIDYL--K 170
                     L+ +        + Q+    +  +S   +     SP   +F D+D +  +
Sbjct: 134 LEGMDQE--MLNEISISAVGEAMNQMMGAASTAMSNILDVLVNISPPTAEFIDLDDVIEE 191

Query: 171 KNTNRLSNEFVTTINMNMTIENV 193
                   E +   +  + + +V
Sbjct: 192 GRDWFDPAEEIVVTSFKLKVGDV 214


>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
 gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
           35185]
          Length = 398

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  T+KD++ L  G ++           +  NGK +   E+  + +N
Sbjct: 320 LDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDEN 379

Query: 296 YTIRITDRINFDQK 309
           + +RITD ++  ++
Sbjct: 380 FGVRITDIVSPAER 393


>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 97

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILS 278
           E Q+    D   R    L+V ++  + L +   T++D++ L  G VI           + 
Sbjct: 2   EAQTPRNGDSTRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            NG+ +   E   V   + +RITD ++  ++  +
Sbjct: 62  VNGRLVARGEAVVVNDKFGVRITDIVSPQERIQR 95


>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
 gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
 gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
 gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
 gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
 gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
 gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
 gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
 gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
 gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
 gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
 gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 138

 Score = 40.4 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 118 KYGVRITDIITSSERMRR 135


>gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis
           C6786]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
             ++  ++     P       L V ++  +  ++ T+  + +   G V+P          
Sbjct: 224 DERAAAEAPQDAPPPTFDIDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAP-GEVT 282

Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
           + ANG+     EL +VG+   + + 
Sbjct: 283 IRANGRPFGCGELIQVGEQLAVEVK 307


>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
 gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           32953]
 gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
           31758]
 gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           YPIII]
 gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
           PB1/+]
          Length = 138

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 118 KYGVRITDIITPSERMRR 135


>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
           DSM 13965]
          Length = 132

 Score = 40.4 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  T+++++ +  G V+           L  NG+ I   E+  + +N
Sbjct: 54  LDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDEN 113

Query: 296 YTIRITDRINFDQKSLK 312
           + IRITD ++  ++  +
Sbjct: 114 FGIRITDIVSPGERLRR 130


>gi|312602786|ref|YP_004022631.1| type III secretion apparatus protein SctQ [Burkholderia rhizoxinica
           HKI 454]
 gi|306431589|emb|CBK52141.1| type III secretion apparatus protein SctQ [Burkholderia rhizoxinica
           HKI 454]
 gi|312170100|emb|CBW77112.1| type III secretion apparatus protein SctQ [Burkholderia rhizoxinica
           HKI 454]
          Length = 400

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
            I ++   E    +  +      L    +     ++ + +         A    QL + I
Sbjct: 277 LIRLHAQAEIGGQTLSI------LKDPYMTEHVDKSLANDTLTAEARDEAACIDQLELPI 330

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREK-TCAILSANGKEIYSCELGRVGKNYTIRIT 301
              I+     L ++  L+ G V+   +        L  +G+ I   EL  VG +  IRI 
Sbjct: 331 QLEIDTIALPLHEICALRAGYVLELPNPVDAVQIKLVTHGRTIGYAELVSVGDHLGIRIL 390

Query: 302 DRIN 305
             + 
Sbjct: 391 QMVQ 394


>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
 gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetivibrio cellulolyticus CD2]
          Length = 410

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V +   + L +T   +KD++    G +I           +  NGK I   E+  + ++
Sbjct: 336 MDVPLQVTVELGRTNRLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAKGEVVVIDES 395

Query: 296 YTIRITDRINFDQKS 310
           + +RITD I+  ++ 
Sbjct: 396 FGVRITDIIHPSKRL 410


>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 293

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 27/212 (12%)

Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN-QCISTTQESSPNLEDFYDIDYL 169
           +LG + +    + +  ++    ++       IS  +N Q           +     I+  
Sbjct: 75  MLGGTGDLKEHIDD-EITDAINEIVSNICGSISTSVNAQGFPDISGLKHEILGSKIIECN 133

Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVL-----IIPQETLLKTTLISLSSQNKSENQ- 223
            K  N   N F    +  + ++N  S  ++     I+P  + +       +S N+S +Q 
Sbjct: 134 GKENND--NTF----SFKLNLDNKISEVIISFDDVILPFLSEITGKEADAASNNESSSQG 187

Query: 224 ----------SEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
                        L D  ++       + + +  R+  K   LKD++   IG++I     
Sbjct: 188 FPSLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLLKDILKWDIGEIIELEQM 247

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                 +  NG +I   E   V   + ++I +
Sbjct: 248 VNEPLDILVNGIKIGEGEAVIVEGKFGLKIKN 279


>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
 gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  R+   + T+K ++ L  G ++           L  NGK I   E+  + +
Sbjct: 297 IQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDE 356

Query: 295 NYTIRITDRINF 306
           N+  R+ D I+ 
Sbjct: 357 NFGFRVKDIISP 368



 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 58/160 (36%), Gaps = 5/160 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +            +D  V+I+    +   F  +   ++   V  +   +S      
Sbjct: 39  EIGNIAMGSAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGLEGIN 98

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +       + + + ++G    +  +L    LS + + + +   +  +++ +  ++    
Sbjct: 99  LLIIKEEDAMVIADLMMGGDGTSDEKLDEIHLSAIGEAMNQMMGSSSTSM-SSILNEVVN 157

Query: 156 SSPNLEDFYDIDYLKKNTNR---LSNEFVTTINMNMTIEN 192
            SP    + DID L     +     +E V +I+  + + +
Sbjct: 158 ISPPETKYLDIDELNGKREKYLGSDDEKVVSISFRLKVGD 197


>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
 gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
          Length = 138

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 118 KYGVRITDIITPSERMRR 135


>gi|167841182|ref|ZP_02467866.1| translocation protein in type III secretion [Burkholderia
           thailandensis MSMB43]
          Length = 327

 Score = 40.4 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 4/97 (4%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           I ++ +   +    +  DP A          +V I  +       L  +  L+ G ++  
Sbjct: 231 IGVTMETFDDWLDVEPADPAATLPLVLPLDASVRIVAQAAAIDVPLDRLAALRSGDILEG 290

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
                    L   G+      L  +     IRI   +
Sbjct: 291 PAIGDGLCTLKIGGRPFARGMLLDIDGRLAIRIEHFV 327


>gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family
           [Succinatimonas hippei YIT 12066]
 gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family
           [Succinatimonas hippei YIT 12066]
          Length = 315

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 33/92 (35%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
            +  LSS  K+++  +            + + I+  +   K  L  +  L  G V+   +
Sbjct: 222 QITLLSSLQKTDSGDDMADSEELTTIEDVELTINFSLESIKLPLSSIKELTEGSVLDLNN 281

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                  +   GK I    +  VG    ++IT
Sbjct: 282 SALENIAVKLEGKTIGYGRIIEVGGKNALQIT 313


>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
 gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
           K31]
          Length = 83

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   +NV I   +      ++ ++ +  G VIP   +      + AN   I   E+    
Sbjct: 3   QVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISD 62

Query: 294 KNYTIRITDRIN 305
               I++T   +
Sbjct: 63  DRIAIQVTRAAD 74


>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
 gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Thermoanaerobacter italicus Ab9]
          Length = 375

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKT 273
            Q+  E  S +  +        L+V +   + L +T   +KD++ L  G +I        
Sbjct: 275 FQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGE 334

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              + ANGK I   E+  + +N+ +RI D ++  ++ 
Sbjct: 335 PVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371


>gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 140

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           ++T L S S   KS+  S   ++   ++           I      +  +  LK G V+P
Sbjct: 44  IETLLASGSPMLKSDGTSSVELEQIPQQVL-------FEIGRASLEIGQLRQLKTGDVLP 96

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                     +  N + I   EL   G  + +RIT
Sbjct: 97  VGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRIT 131


>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
           5521]
 gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 412

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
           P       ++V +D  + L +T  +++D++ L  G +I      +    +  NGK+I   
Sbjct: 326 PIKNIDLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALG 385

Query: 288 ELGRVGKNYTIRITDRIN 305
           E+  V +N+ +RIT+ ++
Sbjct: 386 EVVVVDENFGVRITNIVS 403


>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
 gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
          Length = 124

 Score = 40.0 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 44  ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 103

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 104 KYGVRITDIITSSERMRR 121


>gi|238786391|ref|ZP_04630319.1| Type III secretion system apparatus protein [Yersinia bercovieri
           ATCC 43970]
 gi|238712699|gb|EEQ04783.1| Type III secretion system apparatus protein [Yersinia bercovieri
           ATCC 43970]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
            +   I      L ++  L +GQ +           +  NG+ + S  L R G++  +RI
Sbjct: 241 TLVMEIGRIAVPLGEIKQLAVGQTLNCQTSVYGEVNIRLNGQPVGSGSLLRCGEDLVVRI 300

Query: 301 TD 302
             
Sbjct: 301 DQ 302


>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
 gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
          Length = 212

 Score = 40.0 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 239 NVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V++D RI L   +  L+DV+ L+ G V+           +  NG+ I   E+  +  N+
Sbjct: 139 DVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVLNDNF 198

Query: 297 TIRITDRINFDQ 308
            +R+ + ++ D 
Sbjct: 199 CVRVAELLSGDD 210


>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
 gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
           4541]
          Length = 138

 Score = 40.0 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K +++L  G V+           +  NG  I   E+  V  
Sbjct: 58  IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117

Query: 295 NYTIRITDRINFDQKSLK 312
           NY IRITD I   ++  +
Sbjct: 118 NYGIRITDIITPSERMRR 135


>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
 gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Tepidanaerobacter sp. Re1]
          Length = 376

 Score = 40.0 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 196 SFVLIIPQETLLK--TTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLKKT- 251
             VL +PQ+  LK            +     E+     +      L+V ++  + L +T 
Sbjct: 253 EAVLTMPQKEPLKSAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRTE 312

Query: 252 -TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            T+K+++ +  G +I         A +  NGK +   E+  + +N+ +RIT+ IN 
Sbjct: 313 KTIKEILEISSGTIIELDKMAGEPADILVNGKLVAKGEVVVIDENFGVRITEIINS 368


>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
 gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
          Length = 138

 Score = 40.0 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K +++L  G V+           +  NG  I   E+  V  
Sbjct: 58  IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117

Query: 295 NYTIRITDRINFDQKSLK 312
           NY IRITD I   ++  +
Sbjct: 118 NYGIRITDIITPSERMRR 135


>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
 gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
          Length = 138

 Score = 40.0 bits (92), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 118 KYGVRITDIITSSERMRR 135


>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 101

 Score = 40.0 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 239 NVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V ++  + L     ++ ++  LK G V+  L +    A L  +GK +    L  V  N+
Sbjct: 34  HVVVELVVQLGHASMSVDELFALKAGDVVKLLEQVHEPASLCLDGKPVARGNLVAVDDNF 93

Query: 297 TIRITD 302
            I++T+
Sbjct: 94  GIQLTE 99


>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           493-89]
 gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
           H 2687]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|149191149|ref|ZP_01869407.1| flagellar basal-body rod protein B [Vibrio shilonii AK1]
 gi|148834987|gb|EDL51966.1| flagellar basal-body rod protein B [Vibrio shilonii AK1]
          Length = 255

 Score = 40.0 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +          V +   +   + TL ++  L+ G  +P          +  NG   +  
Sbjct: 183 REEILNNLRYQPVELGCVMLHGQCTLHELSKLQPGDFMP--MTLCKNLTVKVNGHPTFFG 240

Query: 288 ELGRVGKNYTIRITD 302
           +L  +     + I  
Sbjct: 241 KLQSINSELGVEIDG 255


>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
 gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
          Length = 136

 Score = 40.0 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 56  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 115

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 116 KYGVRITDIITPSERMRR 133


>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
 gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
          Length = 96

 Score = 40.0 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V +   +  K   L+DV+ L    VI           +  NGK I   E+   G 
Sbjct: 11  IQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQGN 70

Query: 295 NYTIRITDRINFD 307
            + IR+ + +   
Sbjct: 71  RFAIRVLEIVGAS 83


>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
 gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
           25644]
          Length = 409

 Score = 40.0 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +N+   +   K +++++++   G VI           +  NGK I   E+  +  
Sbjct: 330 LMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVIND 389

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RIT+ ++  Q+ 
Sbjct: 390 NFGVRITNILSQSQRI 405


>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.46,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            SE +  ++          + + +   +   + TLK V+ +  G +I           + 
Sbjct: 58  PSETRKTEVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDIL 117

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            NGK I   E+  + +N+ +RIT+ ++  ++ 
Sbjct: 118 VNGKLIARGEVVVIDENFGVRITEIVSPKERL 149


>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
 gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
 gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMRR 131


>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
 gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
           WSU 86-1044]
          Length = 165

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           K +++ ++ L+ G  I    R ++   L  NG  +   EL +VG+N  IRI +
Sbjct: 111 KMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGENLGIRILE 163


>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
 gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium papyrosolvens DSM 2782]
          Length = 400

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           PQ      ++  +  Q   +  S       +     L + +   +   +  +KD++    
Sbjct: 293 PQRQRSPVSVQPVQFQAFDDGLSATEKKNISL-IMDLPLQVTVELGRTQKLIKDILEFGS 351

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           G VI           +  NGK I   E+  + +++ +RITD I+  ++ 
Sbjct: 352 GSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400


>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMRR 131


>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
 gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
 gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
 gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
 gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|149908776|ref|ZP_01897436.1| hypothetical protein PE36_21284 [Moritella sp. PE36]
 gi|149808050|gb|EDM67991.1| hypothetical protein PE36_21284 [Moritella sp. PE36]
          Length = 306

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 17/183 (9%)

Query: 89  SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
           ++      +  +N ++ TL E  LGA+  +      +  S  E +L KR +      L+ 
Sbjct: 109 NNVGLKVLLSINNAMLYTLTEIFLGATKPSNKDNLAQP-SDSEYRLLKRILTIQLDALDN 167

Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
                      L   ++      N   + +EF+ +  ++ TI+   SS+ +  P     K
Sbjct: 168 ----------QLSHHHEWTISHTNQPTIGDEFI-SSTIDCTIKEYLSSWRIWYP-----K 211

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +    S N+++   E L    A     +  NI+  +   +  L  +  LK G  I   
Sbjct: 212 EFINQTLSSNRTKPDYELLAAKLANAATNIPTNINVILAKTQLNLVQLTQLKSGDFIMMD 271

Query: 269 HRE 271
             E
Sbjct: 272 LPE 274


>gi|119947193|ref|YP_944873.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37]
 gi|119865797|gb|ABM05274.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37]
          Length = 266

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           IP + +L   +     ++   +   D      +    + V     +  +   L D+ +L 
Sbjct: 162 IPFKVILNQNIEQTLVKSYLPHPLIDKA-SIEKSLLSVEVEGYVTMMSRTLKLGDISSLN 220

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           IG VI     +      S     ++  ++    +     + D+   DQ
Sbjct: 221 IGDVISMEMHDHAF--FSIGDTTVFRGKISTQNERLLFTVNDQQENDQ 266


>gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
 gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
          Length = 98

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           S+  +       A     ++V ++  + L   K  L  +  L  G VI           +
Sbjct: 2   SDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQI 61

Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            ANG      E+   G    +RIT+ +    + 
Sbjct: 62  LANGSIFAKGEVVSTGDKLGVRITEIVPASARI 94


>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
 gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
 gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
 gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
 gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
 gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
 gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
 gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
          Length = 293

 Score = 40.0 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 90/295 (30%), Gaps = 41/295 (13%)

Query: 30  TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
            +E    +L    +  L +    ++     I+         +  ++    + V   AS  
Sbjct: 9   RLEATREALQQFLQTLLNQELTLELGTPATIT---------TDQLNELAGDRVLIWASSE 59

Query: 90  SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
                F IG + + +  L + +LG          +     +  ++A +    +   L   
Sbjct: 60  P----FAIGLTPDWIPLLSQAMLG----EALNPGDEGTDDLLGEVAAQGYGTLRNALAAE 111

Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
                E S  ++         +    L +  +      + I +      +++P     + 
Sbjct: 112 GVRLPEVSFVVQQPGS--GAAQPPVELPDSLLQL-PFTLQIGDTRHEGFILLPPSVTQQP 168

Query: 210 T------------------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--K 249
           T                  +   S       +  D       +    +V ++  + L  +
Sbjct: 169 TSRAPKATAAGAAEQAAVEVRPASFGELGPERIGDGGVKGNLELL-ADVELEIVVELGRR 227

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
           +  L DV+ L  G +I           + ANG+ I   E   + + + +RIT  +
Sbjct: 228 RLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLV 282


>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
 gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
          Length = 419

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
            +        ++V +   + +  T   +KD++    G +I    +      +  NG  I 
Sbjct: 329 SEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIA 388

Query: 286 SCELGRVGKNYTIRITDRI 304
             ++  +  N+ +RIT+ +
Sbjct: 389 RGDVVVIDDNFAVRITEIV 407


>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
 gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMRR 131


>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
 gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
 gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
 gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
 gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
 gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
 gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
           coli IAI39]
 gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
           coli UMN026]
 gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
 gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
 gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
 gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
           FVEC1302]
 gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
 gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
 gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
 gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
 gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
 gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
 gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
 gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus
           nasoniae]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           PQ  ++   L    + ++ ++ +            QL + ++  +  +  +L  + + + 
Sbjct: 129 PQGNIM---LEQPVTSDQDDHNASPESSTAIFDLNQLALKVNFILQRQTFSLNTIKSWQT 185

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
           G  +           L  NG+     EL +VG+   + +   ++ +Q+
Sbjct: 186 GTQLRLNSDAHCAIALEINGQIFAKGELIQVGEQLAVELHTLLSTEQE 233


>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
 gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
 gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
 gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
 gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
 gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
 gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
           coli S88]
 gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
 gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
 gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
 gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
 gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
 gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
 gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
 gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium carboxidivorans P7]
 gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
           P7]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + ++I   +   K  +KD++ L  G +I      +    +  NGK +   E+  V +
Sbjct: 327 ILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVVVVDE 386

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RIT  I+ +++ 
Sbjct: 387 NFGVRITSIISSEERI 402



 Score = 39.2 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 61/202 (30%), Gaps = 9/202 (4%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+       +   +   F+          +S      
Sbjct: 58  EIGNISMGSASTALSTIINQQVNITTPIVTITRLKDLKDQFEVPNVALEVKYVSGIVGEN 117

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         +   ++G             LS +E       + Q+    +  +     
Sbjct: 118 LLVMKITDAAVIANLMMGGDGNVEGDPKE--LSEIELSAVSEAMNQMIGSAATSMATMFM 175

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210
                SP +   ++            +E +  ++ ++ I ++  S+ + I+P  T  K  
Sbjct: 176 REVNISPPVSTIWNDLKSPVAKGISEDEPIIKVSFSLAIGDLVDSTIMQILPIATAKK-I 234

Query: 211 LISLSSQNKSENQSEDLIDPFA 232
           +  +  Q   E ++    +P A
Sbjct: 235 VSIMMGQESPEGEAPAQPEPQA 256


>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis EO147]
 gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
           [Burkholderia oklahomensis C6786]
          Length = 115

 Score = 40.0 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P   +L   L   +S + ++       DP      ++ V +   +     TL +++ ++ 
Sbjct: 7   PDLDVLLDDLAPEASDSPADAIERPRRDPMQL-LAKIPVQLTLEVGSATITLAELMAIEE 65

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           G V+          ++  NG  +   E+   G NY +++ D
Sbjct: 66  GSVLELDRLAGEPLLIKINGTPVGHAEVVVSGDNYGLKLLD 106


>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
 gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 74  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 133

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 134 KYGVRITDIITPSERMRR 151


>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
 gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium cellulolyticum H10]
          Length = 402

 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
           M  ++ N     V   PQ       +     Q   +  S       +     L + +   
Sbjct: 279 MQQSMPNFGYDGVYQEPQRQRAPVNVQPAQFQAFDDGLSVTEKKNISL-IMDLPLQVTVE 337

Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
           +   +  +KD++    G VI           +  NGK I   E+  + +++ +RITD I+
Sbjct: 338 LGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIH 397

Query: 306 FDQKS 310
             ++ 
Sbjct: 398 PSKRL 402


>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND 113

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 114 KFGVRITDIITPSERMRR 131


>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
 gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMRR 131


>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
 gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 134

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMRR 131


>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. W3110]
 gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
 gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
 gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
           coli str. K12 substr. W3110]
 gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. MG1655]
 gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
           coli BW2952]
 gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
 gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
           EDL933]
 gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
 gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
 gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
 gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
 gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
 gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
           enabling rotation and determining its direction
           [Escherichia coli O157:H7 str. EDL933]
 gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           Sakai]
 gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
 gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
 gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
 gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC869]
 gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC508]
 gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
 gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
 gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
 gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
 gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
 gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
 gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
 gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
           coli 55989]
 gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
           coli IAI1]
 gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
           coli ED1a]
 gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
           coli O157:H7 str. TW14359]
 gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O26:H11 str. 11368]
 gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O103:H2 str. 12009]
 gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
           [Escherichia coli O111:H- str. 11128]
 gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
 gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
 gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
 gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
 gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
 gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
 gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
 gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
 gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
 gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
 gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
 gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
 gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
 gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
 gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
 gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
 gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
 gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
           coli W]
 gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
 gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
           74-1112]
 gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
 gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           G5101]
 gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
 gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
 gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
 gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
 gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
 gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
 gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
 gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
 gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
 gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
 gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
 gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1044]
 gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
           1125]
 gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
 gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
 gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
 gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
 gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
 gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
 gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
 gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
 gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
 gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
          Length = 313

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + V +   +  K   ++ +  L  G  I          I+  NG  + S EL ++
Sbjct: 238 QSINSIPVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKI 297

Query: 293 GKNYTIRITDRINFDQ 308
           G N+ + I    +  +
Sbjct: 298 GDNFAVEIQRSFSAQE 313


>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
 gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
          Length = 288

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  RI  KK  LKDV+ + IG VI           +  +   I   E+  V  
Sbjct: 208 IMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGEVVIVDG 267

Query: 295 NYTIRITDRINFDQKSLKNF 314
           N+ ++IT  I   ++ L   
Sbjct: 268 NFGVQIT-SIGSKRERLTQL 286


>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
           BAA-895]
 gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
          Length = 137

 Score = 40.0 bits (92), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|288550130|ref|ZP_05969371.2| flagellar motor switch protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316311|gb|EFC55249.1| flagellar motor switch protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 293

 Score = 39.6 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%)

Query: 195 SSFVLII--PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
            SF L+        L   L S  +   +  Q+        R  Y L + +   +     T
Sbjct: 177 GSFTLLFDNAHVDHLLAKLRSPDADQATSRQAPPTPTQIERIFYGLPLKLHGHVTSLNLT 236

Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           +  +  +K G +IP    E          ++I+  ++        +
Sbjct: 237 VAQLARIKPGDIIPVNINENIPV--YIGKEQIFDAKIAEDRGKLLL 280


>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
 gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
           30120]
          Length = 138

 Score = 39.6 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K +++L  G V+           +  NG  I   E+  V  
Sbjct: 58  IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117

Query: 295 NYTIRITDRINFDQKSLK 312
           NY IRITD I   ++  +
Sbjct: 118 NYGIRITDIITPSERMRR 135


>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
          Length = 133

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 53  IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 113 KYGVRITDIITPTERMRR 130


>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
 gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
           20603]
          Length = 259

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%)

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
           D   R  Y + + +   I   K  ++ V+ L  G ++         A L  NG  +   E
Sbjct: 177 DDKLRLLYDVEMTLTVEIGRAKLPVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGE 236

Query: 289 LGRVGKNYTIRITDRINFDQ 308
           +  V ++Y +R+T+ I+  +
Sbjct: 237 VVVVDEDYGLRVTEIIDTTE 256


>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
 gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
          Length = 133

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +D  + +      L++V+ L    V+           L  NGK I   EL  V  N
Sbjct: 54  LDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNN 113

Query: 296 YTIRITDRINFDQKS 310
           + ++IT  +  +++ 
Sbjct: 114 FGLKITHVVTPEERL 128


>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
 gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
 gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
 gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
 gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
 gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
 gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
           2457T]
 gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
 gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
 gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
           2457T]
 gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
 gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
 gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
 gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
 gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
 gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
 gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
 gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
 gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
          Length = 127

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V+I   +  K   L +++ LK G V+     E     +  NG    + E+      Y +R
Sbjct: 58  VDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNGQYGVR 117

Query: 300 ITDRINFDQK 309
           +   I    K
Sbjct: 118 LLSIIKKPSK 127


>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
 gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
           denitrificans OS217]
          Length = 122

 Score = 39.6 bits (91), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +   +  L D+  +  G VI           +  NG  +   E+  VG  
Sbjct: 45  QQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALLGKGEVVEVGGR 104

Query: 296 YTIRITD 302
           Y +R+ +
Sbjct: 105 YGVRLLE 111


>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
          Length = 134

 Score = 39.6 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMRR 131


>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
 gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
           35316]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 154

 Score = 39.6 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 74  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 133

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 134 KYGVRITDIITPSERMRR 151


>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
 gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
           29220]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
 gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
          Length = 250

 Score = 39.6 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + +   +   + T++++++L  G VI       + A L  NG+ I   E+  + +N+ 
Sbjct: 174 VEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVIDENFG 233

Query: 298 IRITDRINFDQK 309
           IR+T+ I     
Sbjct: 234 IRVTEIIKPGDT 245


>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
           W22703]
          Length = 138

 Score = 39.6 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 118 KYGVRITDIITPSERMRR 135


>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
 gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
 gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
 gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
          Length = 350

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 211 LISLSSQNKSENQSEDLIDPFAR-KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
           +  L+ Q  +E  +E   +        Q++V +   ++ ++ ++ ++ +   G ++    
Sbjct: 248 MSELAEQVNAEQTAEAGAEEIGSIDLSQMSVPVRFEVDEREISIAELESWAAGTLVNIDV 307

Query: 270 R---EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
               E+T   + A GK I    L ++ +   +RI+  
Sbjct: 308 PALNEETPVYVRAAGKRIAKGHLVQIDERVALRISKT 344


>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
 gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
          Length = 133

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 2/110 (1%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIG 262
            + +      S       +S D+          +++ +   + L   K T+K+++ L  G
Sbjct: 21  AMNEQASTPSSEGVFKSLESNDITGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQG 80

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   Y +RITD I   ++  +
Sbjct: 81  SVVSLEGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPTERMRR 130


>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
 gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           TXDOH]
 gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           Bt4]
 gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
 gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
           E264]
          Length = 115

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
            + +  + +        DP      ++ V +   +     +L +++ +  G V+      
Sbjct: 17  PTDAPADTATTADAPRRDPRHL-LAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLA 75

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
               ++  NG  +   E+   G+NY ++I D  N
Sbjct: 76  GEPLLVKVNGTTVGHAEVVVSGENYGLKIIDLEN 109


>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
 gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
 gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
           BAA-2158]
          Length = 133

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 53  IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 113 KYGVRITDIITPTERMRR 130


>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
          Length = 138

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 118 KYGVRITDIITPTERMRR 135


>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 375

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 47/114 (41%), Gaps = 2/114 (1%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTL 259
           P+   + T  + +     +    +++    +      ++ +   + L +T  T+ +++ +
Sbjct: 260 PRSASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNM 319

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
             G V+           +  NGK I   E+  + +N+ +R+T+ ++  ++    
Sbjct: 320 SPGSVVELNRMAGEPVDVLVNGKLIARGEVVVIDENFGVRVTEIVSRAERIRSM 373


>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
 gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
          Length = 133

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 53  IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 113 KYGVRITDIITPTERMRR 130


>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
 gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 83

 Score = 39.6 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V ++ R+ L       + ++ +K G +IP     +   I+          E+  + + Y
Sbjct: 12  DVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIGEMTNINEKY 71

Query: 297 TIRITDRINFD 307
            IRI D I  D
Sbjct: 72  GIRIVDLIKED 82


>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
 gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
           MC0-3]
          Length = 113

 Score = 39.6 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           L    KS  ++    DP  R   ++ V +   +      L D+++ + G  +        
Sbjct: 17  LGDDPKSITETASPRDPM-RMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGE 75

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITD 302
             ++  NG  +   E+   G++Y +RI +
Sbjct: 76  PLVIKVNGTPVGLGEVVVSGEHYGLRIIE 104


>gi|311087551|gb|ADP67630.1| flagellar motor switch protein FliM [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 183

 Score = 39.6 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 15  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 69

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 70  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 129

Query: 145 VLNQCISTT 153
             ++     
Sbjct: 130 AFSEIYKKY 138


>gi|311085822|gb|ADP65904.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 178

 Score = 39.6 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 27  DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
           + K +EKI+      + KF     K  ++ +   I   SC S K   II + +     + 
Sbjct: 10  EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 64

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144
             +  +    FI    N +  +++ L G   +        R +++ E  + K+ +  I+ 
Sbjct: 65  IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 124

Query: 145 VLNQCISTT 153
             ++     
Sbjct: 125 AFSEIYKKY 133


>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
 gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
           hathewayi DSM 13479]
          Length = 318

 Score = 39.6 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%)

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
           D I    +K   + +++  RI     ++KD++ L+ GQ++    +  + A +  NGK I 
Sbjct: 236 DHIGEERKKLRDITLDVSVRIGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIG 295

Query: 286 SCELGRVGKNYTIRITDRINFDQ 308
             ++      +  RI + I    
Sbjct: 296 KSDVLVTDDKFAARIIEIIGKRD 318


>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
           35469]
 gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
           fergusonii ATCC 35469]
 gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
 gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 342

 Score = 39.6 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
            +P A    QL V +   +     TL+ + +L  G  I           + ANG+ I   
Sbjct: 265 TEPLAL-VDQLEVELTFLVGTHAATLEQLRSLAPGACIELPTPASQAVTICANGRAIGKG 323

Query: 288 ELGRVGKNYTIRITD 302
           EL  +G    +RIT+
Sbjct: 324 ELLDIGNRIGVRITE 338


>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
 gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 124

 Score = 39.6 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 44  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 103

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 104 KYGVRITDIITPSERMRR 121


>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 124

 Score = 39.6 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 44  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 103

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 104 KYGVRITDIITPSERMRR 121


>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
 gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
          Length = 422

 Score = 39.6 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 37/105 (35%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           +      +     +       +          + + +   +   +  +KD++ L  G V+
Sbjct: 313 IRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVILGRTRWPIKDILGLTPGSVV 372

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
              +       +  NG  +   E+  V +N+ +RIT  I  +++ 
Sbjct: 373 ELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGPEERL 417


>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
          Length = 325

 Score = 39.6 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 35/90 (38%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
           +++++L +       ++ + I   +  +   L+ +  L  G +I           + AN 
Sbjct: 214 SETDNLANQSLTNLEEIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVPVNGDVRIIANQ 273

Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSL 311
           + + + +L  +     I++ +      + L
Sbjct: 274 QPLGTGQLVEIQGRLGIKVVELFAKKTEPL 303


>gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. K]
 gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ
           [Anaeromyxobacter sp. K]
          Length = 324

 Score = 39.6 bits (91), Expect = 0.64,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 71/256 (27%), Gaps = 45/256 (17%)

Query: 86  ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV--------------- 130
             L +      +     LV+ +++ + G      P     SL+ V               
Sbjct: 66  LDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAA---SLTPVEATALELLALAALDG 122

Query: 131 -------EKKLAKRT-------IAQISAVLNQCISTTQESSPNLED---------FYDID 167
                  E++L+ R           ++  L       +  +  L             ++D
Sbjct: 123 ACGVAELEERLSPRLARADAEPAGALAVELEVTAGPARGRARLLLPPAAVRALRGPAELD 182

Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQS 224
                   +           +         V+  P   ++ L+    +    +   E   
Sbjct: 183 RQLPVPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLRALGRIDGEGFH 242

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
            +  +  A +  QL V ++  +      L +V  L+ G V+      +    L    + +
Sbjct: 243 VEETE-MAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAV 301

Query: 285 YSCELGRVGKNYTIRI 300
              EL  V     +RI
Sbjct: 302 ARGELVDVEGAVGVRI 317


>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMHR 134


>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
 gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
          Length = 118

 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +   + +L +++ L  G ++           L  NG  +   E+  V   Y +R
Sbjct: 45  VQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVVEVNGRYGVR 104

Query: 300 ITD 302
           + +
Sbjct: 105 LLE 107


>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
 gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
           hamburgensis X14]
          Length = 87

 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/79 (12%), Positives = 26/79 (32%)

Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
           F     +++V++   +      +  V+ L  G +I     E+    + AN   + S  + 
Sbjct: 7   FVATLDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVV 66

Query: 291 RVGKNYTIRITDRINFDQK 309
                  + +   +     
Sbjct: 67  VNRNRIAVEVKQMLPRTPD 85


>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
          Length = 134

 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 54  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 114 KYGVRITDIITPSERMHR 131


>gi|33352148|emb|CAD91923.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 1058

 Score = 39.6 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                ++  +         VL+I   T++    +      K+ +    +  P A+   + 
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              I  RI+       DV+T ++G +IP   R      L  
Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175


>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
           SCRI1043]
          Length = 137

 Score = 39.6 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 212 ISLSSQNKSENQSEDLIDPFA-----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
              ++  +   +S D  DP            + V +   +   K T+K+++ L  G V+ 
Sbjct: 29  EKPAATTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVA 88

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     +  NG  I   E+  V   Y +RITD I   ++  +
Sbjct: 89  LDGLAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 134


>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
 gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
           35580]
          Length = 382

 Score = 39.2 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 134 LAKRTIAQISAVLNQCISTTQESS----PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
           +AK+T  QI+  L++  S  Q +     P          +      ++            
Sbjct: 196 IAKKTAEQIADKLSKTESAPQAAPVQPIPAQSAPDQGGGMGAMNMPMNGMNGMPQMGQQP 255

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINL 248
           +         +  Q  ++   +       +       + +         ++V ++  + L
Sbjct: 256 MGMGMQMQGGVQAQGGMVMPGMNPNVQSVQFSPLLNGVTEAEQGNIGLIMDVFMEMTVEL 315

Query: 249 KKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +T   +K+++++  G +I           +  N K I   E+  + +N+ +R+T+ ++ 
Sbjct: 316 GRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDENFGVRVTEILSP 375

Query: 307 DQKSLK 312
            ++   
Sbjct: 376 AERISD 381


>gi|33352140|emb|CAD91919.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 1058

 Score = 39.2 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                ++  +         VL+I   T++    +      K+ +    +  P A+   + 
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              I  RI+       DV+T ++G +IP   R      L  
Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175


>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
 gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
          Length = 80

 Score = 39.2 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           ++V++   +   K  +  V+ L  G +I     E+    + AN   + S  +        
Sbjct: 7   VSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRNRIA 66

Query: 298 IRITDRINF 306
           + +   +  
Sbjct: 67  VEVKRMLPK 75


>gi|167626140|ref|YP_001676434.1| hypothetical protein Shal_4235 [Shewanella halifaxensis HAW-EB4]
 gi|167356162|gb|ABZ78775.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4]
          Length = 293

 Score = 39.2 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 18/176 (10%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
            S  +  Q   R+ S  E +L KR +  +   L           P  E   D   L+   
Sbjct: 112 GSCSSALQSPMRAPSQSEYRLVKRLMMAVIRTL-----------PVTEIDEDKLELELVM 160

Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
           N    +      +     +      L       L   L  ++ Q        +L    A 
Sbjct: 161 NTTPIKAPVCCELAFPAAHAGP--ALCFYMAEHL---LELMAEQPSQYQADPELSLKLAH 215

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           +  Q+ +     +  +   +  + +L +G ++P      +   ++   + ++   +
Sbjct: 216 RLKQIPLRTLLELGHQSMPVTSLQSLAVGDILPMNL--HSRCPVTVGKRPLFYATV 269


>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
 gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
          Length = 136

 Score = 39.2 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 56  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 115

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 116 KYGVRITDIITPSERMRR 133


>gi|168055850|ref|XP_001779936.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens]
 gi|162668650|gb|EDQ55253.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens]
          Length = 1058

 Score = 39.2 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                ++  +         VL+I   T++    +      K+ +    +  P A+   + 
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              I  RI+       DV+T ++G +IP   R      L  
Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175


>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
           [Paenibacillus polymyxa SC2]
 gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus polymyxa SC2]
          Length = 437

 Score = 39.2 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++ +   + L +T   +KD++ L  G +I           +  N K I   E+  + +N
Sbjct: 359 MDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVNNKLIAKGEVVVIDEN 418

Query: 296 YTIRITDRINF 306
           + +R+TD ++ 
Sbjct: 419 FGVRVTDIVSQ 429


>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
 gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
          Length = 137

 Score = 39.2 bits (90), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMHR 134


>gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
 gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius]
 gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
           'morsitans']
          Length = 338

 Score = 39.2 bits (90), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 34/99 (34%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
               K      ++      +     D  A     L + ++  +  +  +L ++   + G+
Sbjct: 231 AVHPKVRDGLAAAAPTPTGRLALGDDTAADPLANLPLTLEFILQRRYLSLGEIQQFRQGK 290

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           V+      +    + ANG  +   EL ++     + + +
Sbjct: 291 VLELDPEGEKHIEIRANGHLLALGELVQLEDRLGVELME 329


>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
          Length = 144

 Score = 39.2 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           Q     T+  S +     E Q              + V +   +   K T+K ++ L  G
Sbjct: 32  QAAQQPTSDSSAAIFESLEPQDALAHLSDIDLILDIPVKLSVELGRTKMTIKQLLRLSQG 91

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            V+           +  NG  I   E+  V   Y IRITD I   ++  +
Sbjct: 92  SVVSLDGLAGEPLDILINGYLIAQGEVVVVSDKYGIRITDIITPSERMRR 141


>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
 gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
          Length = 137

 Score = 39.2 bits (90), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLK 260
              L +     +       + S D   P   +   ++V ++  + L   +  +KD++ L 
Sbjct: 25  MSDLARELRDEMDHAENPFDVSTDGDLPKNLELL-MDVPLEVSVRLGSVSYQIKDLLRLN 83

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            G ++           +  N + +   E+  +     IRITD ++  ++ 
Sbjct: 84  KGSLVELEKEADDPLEIYVNDRLLAYGEVVMIKDKLGIRITDIVSLKERL 133


>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
 gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
          Length = 123

 Score = 39.2 bits (90), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ VN+   +   + TLK+++ +  G VI           +  NG      E+  +  NY
Sbjct: 47  KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106

Query: 297 TIRITD 302
            +RI +
Sbjct: 107 GLRIVE 112


>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
           baltica SH 1]
 gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
           baltica WH47]
          Length = 141

 Score = 39.2 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 239 NVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            V +D RI L   +  L++V+ L+ G V+           +  NG+ I   E+  +  N+
Sbjct: 70  EVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMNDNF 129

Query: 297 TIRITDRINFD 307
            +R+T+ +   
Sbjct: 130 CVRVTELVGAS 140


>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
 gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
           11B]
          Length = 123

 Score = 39.2 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 34/75 (45%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   +   + T++++++L  G V+       +   L  NG  I   E+  + +
Sbjct: 45  LQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVIDE 104

Query: 295 NYTIRITDRINFDQK 309
            + +RI++ +  D +
Sbjct: 105 EFGVRISEIVGPDSE 119


>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
 gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
 gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
          Length = 118

 Score = 39.2 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +   + +L ++  +  G VI           +  NG  +   E+  V   
Sbjct: 40  QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 99

Query: 296 YTIRITD 302
           Y +R+ +
Sbjct: 100 YGVRLLE 106


>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 103

 Score = 39.2 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++++D    L  TTL  + ++ L+ G VI           L  N K     E+    KN
Sbjct: 21  LDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVYEKN 80

Query: 296 YTIRITDRINF 306
             IRI + ++ 
Sbjct: 81  LAIRINEILDS 91


>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 137

 Score = 39.2 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  ILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
 gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
           OS155]
          Length = 118

 Score = 39.2 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +   + +L ++  +  G VI           +  NG  +   E+  V   
Sbjct: 40  QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 99

Query: 296 YTIRITD 302
           Y +R+ +
Sbjct: 100 YGVRLLE 106


>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 351

 Score = 39.2 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T+    +    ++N S ++  D  D       +L + +  ++   
Sbjct: 236 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344


>gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus
           asymbiotica]
          Length = 309

 Score = 39.2 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           L +++   +  +   L  + +L+ G ++           +  N K + S  L  +     
Sbjct: 238 LEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVRILVNQKCLGSGRLVDIQGRLG 297

Query: 298 IRITDRINFDQKS 310
           +R+ +R+  +++S
Sbjct: 298 VRV-ERLAMEKES 309


>gi|33352150|emb|CAD91924.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 977

 Score = 39.2 bits (90), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                ++  +         VL+I   T++    +      K+ +    +  P A+   + 
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              I  RI+       DV+T ++G +IP   R      L  
Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175


>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 351

 Score = 39.2 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T+    +    ++N S ++  D  D       +L + +  ++   
Sbjct: 236 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344


>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
 gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
          Length = 377

 Score = 39.2 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 194 ASSFVLIIPQET-------LLKTTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTR 245
             +  + IPQ+        ++   +       + +      +          ++V ++  
Sbjct: 248 GMNMQMGIPQQMNGMQQGGMIMPGINPNVQSVQFQPLQNVPVGTEQGNIGLIMDVYMEVT 307

Query: 246 INLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
           + L +    +KD++ +  G +I           +  N K I   E+  + +N+ +R+T+ 
Sbjct: 308 VELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDENFGVRVTEI 367

Query: 304 INFDQKSLK 312
           ++  ++   
Sbjct: 368 LSPVERIAD 376


>gi|33352142|emb|CAD91920.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 977

 Score = 39.2 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                ++  +         VL+I   T++    +      K+ +    +  P A+   + 
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              I  RI+       DV+T ++G +IP   R      L  
Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175


>gi|33352138|emb|CAD91918.1| putative Na P-type ATPase [Physcomitrella patens]
 gi|33352146|emb|CAD91922.1| putative Na P-type ATPase [Physcomitrella patens]
          Length = 938

 Score = 39.2 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
                ++  +         VL+I   T++    +      K+ +    +  P A+   + 
Sbjct: 80  TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
              I  RI+       DV+T ++G +IP   R      L  
Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175


>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 99

 Score = 39.2 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  ++  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
 gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
 gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
          Length = 117

 Score = 39.2 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +     +      L++V+  + G VI              NG+ I   E+    K
Sbjct: 35  LLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK 94

Query: 295 NYTIRITDRINFD 307
           N  IR+ + ++ +
Sbjct: 95  NLAIRLNEVLDSN 107


>gi|255028593|ref|ZP_05300544.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28]
          Length = 99

 Score = 39.2 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 39/98 (39%)

Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
           S+  + +P  ++ +      +    + ++  +      ++ +Q+      R+   KTT K
Sbjct: 1   STMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWK 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++  L++G V+      +         K  + C +G+ 
Sbjct: 61  ELNKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKK 98


>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
 gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
          Length = 84

 Score = 39.2 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
             + +N+   +   + ++++++ L  G +I           L  NGK I   E+  + + 
Sbjct: 1   MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60

Query: 296 YTIRITDRINF 306
           + +R+TD ++ 
Sbjct: 61  FGVRVTDIVDS 71


>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 127

 Score = 39.2 bits (90), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V+I   +  K   L +++ LK G V+     E     +  NG    + E+      Y +R
Sbjct: 58  VDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNGQYGVR 117

Query: 300 ITDRINFDQK 309
           +   I    K
Sbjct: 118 LLSIIKKPSK 127


>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
 gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
          Length = 147

 Score = 39.2 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +        +   +    +P       + V+I   +     T+++++ L  G VI     
Sbjct: 44  MELSEFDEPAAAPASQGNNPDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRL 103

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +  NG  I   E+  V + + IR+TD I+  ++ 
Sbjct: 104 AGEPLDVLVNGTLIAHGEVVVVNEKFGIRMTDVISPSERI 143


>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
           8052]
          Length = 398

 Score = 39.2 bits (90), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
           P       L+V +D  + L +T  +++D++ L  G +I      +    +  NGK+I   
Sbjct: 312 PIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALG 371

Query: 288 ELGRVGKNYTIRITDRINFDQKSLK 312
           E+  V +N+ IRIT+ ++  ++  +
Sbjct: 372 EVVVVDENFGIRITNIVSSVERIKR 396


>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 344

 Score = 39.2 bits (90), Expect = 0.85,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T+    +    ++N S ++  D  D       +L + +  ++   
Sbjct: 229 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 287

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 288 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 337


>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
 gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
          Length = 99

 Score = 39.2 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  ++  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
 gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
          Length = 128

 Score = 39.2 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +   + +L ++  +  G VI           +  NG  +   E+  V   
Sbjct: 50  QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 109

Query: 296 YTIRITD 302
           Y +R+ +
Sbjct: 110 YGVRLLE 116


>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
 gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
           49176]
          Length = 370

 Score = 39.2 bits (90), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVT 258
           +P   +    +    +Q ++ + + + +         ++V ++  + L +T  T+K+++ 
Sbjct: 264 MPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELGRTNKTIKEILD 323

Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
              G +I           L  NGK +   E+  +  N+ IRIT+ +
Sbjct: 324 FSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369


>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
 gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
          Length = 119

 Score = 39.2 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ V +   +     +L D+V +  G V+           +  NG  I   E+   G 
Sbjct: 41  LRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAGD 100

Query: 295 NYTIRITDRINFDQKSL 311
           NY +R+ +  + D  +L
Sbjct: 101 NYGLRVVELNDLDLDTL 117


>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
 gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 123

 Score = 39.2 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ VN+   +   + TLK+++ +  G VI           +  NG      E+  +  NY
Sbjct: 47  KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106

Query: 297 TIRITD 302
            +RI +
Sbjct: 107 GLRIVE 112


>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
           [Xenorhabdus nematophila ATCC 19061]
          Length = 135

 Score = 39.2 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 55  IMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 114

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IRITD I   ++  +
Sbjct: 115 KYGIRITDIITPSERMRR 132


>gi|254499105|ref|ZP_05111795.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12]
 gi|254351644|gb|EET10489.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12]
          Length = 234

 Score = 39.2 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%)

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
           ++D       +  V +   +   K ++  +  +++G V+   H   T   L    + +  
Sbjct: 157 MLDSLDEALAEHTVKLCLELLPSKLSVNHLAGIQVGDVLSTTHPLSTPLRLICGNELLAQ 216

Query: 287 CELGRVGKNYTI 298
            ELG    + +I
Sbjct: 217 AELGYSAHHKSI 228


>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
 gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
          Length = 99

 Score = 39.2 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  ++  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
 gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
          Length = 123

 Score = 38.9 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFAR------KTYQLNVNIDTRINLKKTTLK 254
           +P+    K  +     +  S+ +  +L                + +     +   +  L 
Sbjct: 1   MPETESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60

Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            ++  + G VI              NG+ I   E+    +N  IR+ + ++ +
Sbjct: 61  QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113


>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 301

 Score = 38.9 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T+    +    ++N S ++  D  D       +L + +  ++   
Sbjct: 186 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 244

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 245 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 294


>gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1]
 gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1]
          Length = 441

 Score = 38.9 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L+      +S    +    D           L V++   +      L ++VTL+ G VI 
Sbjct: 340 LEPPRTDSASAAAPDTPPADAPRSLDG----LAVDLRFELPPTSMPLGELVTLQPGAVIE 395

Query: 267 FLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
             H      I L ANG  I + +L  VG+   +R+
Sbjct: 396 LPHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 430


>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
 gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. WCH70]
          Length = 401

 Score = 38.9 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  +++++++L  G +I           +  N K I   E+  + +N
Sbjct: 323 LDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 382

Query: 296 YTIRITDRINFDQKSLK 312
           + +R+TD I+   +  +
Sbjct: 383 FGVRVTDIISQSDRLKR 399


>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 301

 Score = 38.9 bits (89), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T+    +    ++N S ++  D  D       +L + +  ++   
Sbjct: 186 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 244

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 245 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 294


>gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
           35236]
 gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
           35236]
          Length = 269

 Score = 38.9 bits (89), Expect = 0.92,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           +   +  + S    E    D   P A     L   +   +     +L  +  L++G ++P
Sbjct: 156 ISELVQDVESLLMEERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLP 215

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              +      L  NG+ + + EL   G ++ +RI
Sbjct: 216 VAAQFGGEVKLRLNGRVLGAGELVGCGDSFLVRI 249


>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
 gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
          Length = 137

 Score = 38.9 bits (89), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 117 KFGVRITDIITPSERMRR 134


>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
 gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
          Length = 124

 Score = 38.9 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            QL V +   +   + +L ++  +  G VI           +  NG  +   E+  V   
Sbjct: 46  QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 105

Query: 296 YTIRITD 302
           Y +R+ +
Sbjct: 106 YGVRLLE 112


>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
 gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
           2396]
          Length = 318

 Score = 38.9 bits (89), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 28/91 (30%)

Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
            S+ Q              L + ++  +     TL ++  +  G         +    + 
Sbjct: 223 TSDTQHTPEPLDAPSDLGNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAPVAMK 282

Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
            NG+ +  CEL  +      R+      D +
Sbjct: 283 VNGQTLARCELVEIDGRLGARVVRLTGGDSE 313


>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
 gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
           51599]
          Length = 135

 Score = 38.9 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  + +  ++        +             +   + V +   I   +TT+ +V+ L  
Sbjct: 21  PASSAVDPSVTGALPGVMARLGQGTEGGADIERILDIPVQLSVEIGRTRTTINNVLQLAP 80

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+    +      +  NG  I   E+  V   + IR+TD +   ++  +
Sbjct: 81  GSVVELDAQAGAPMDVLINGYLIAQGEVVVVNDRFGIRLTDIVTPAERMRR 131


>gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003]
 gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038]
 gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003]
          Length = 305

 Score = 38.9 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             L     S    E   +P      QL V +   +  +      + +L+ G +I      
Sbjct: 209 NKLEFIGMSHESDELNPEPL-TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 267

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L ANG+ +    L  +     +RI 
Sbjct: 268 DGEVRLLANGRLLGHGRLVEIQGRLGVRIE 297


>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
 gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus sp. Y4.1MC1]
          Length = 395

 Score = 38.9 bits (89), Expect = 0.96,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N
Sbjct: 317 LDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 376

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD I+   + 
Sbjct: 377 FGVRVTDIISQSDRL 391


>gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92]
 gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM]
 gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM]
 gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125]
 gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
 gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q
 gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q
 gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis]
 gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10]
 gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125]
 gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola]
 gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
           pseudotuberculosis PB1/+]
 gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A]
 gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004]
 gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
           pestis KIM D27]
 gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
          Length = 307

 Score = 38.9 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             L     S    E   +P      QL V +   +  +      + +L+ G +I      
Sbjct: 211 NKLEFIGMSHESDELNPEPL-TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 269

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L ANG+ +    L  +     +RI 
Sbjct: 270 DGEVRLLANGRLLGHGRLVEIQGRLGVRIE 299


>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
 gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
          Length = 80

 Score = 38.9 bits (89), Expect = 1.00,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 25/73 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               ++V++   +   +  +  V+ L  G +I     E+    + AN   + S  +    
Sbjct: 3   TIDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNR 62

Query: 294 KNYTIRITDRINF 306
               + +   +  
Sbjct: 63  NRIAVEVKRMLPK 75


>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
 gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Acetohalobium arabaticum DSM 5501]
          Length = 408

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%)

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
            +           + + +  R+   K  +KD++ L  G VI           L  NGK I
Sbjct: 320 TEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIELDKLAGESVDLLVNGKLI 379

Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310
              E+  + +N+  R+TD ++  ++ 
Sbjct: 380 AKGEVVVIDENFGFRVTDIVSPMERI 405



 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 58/174 (33%), Gaps = 12/174 (6%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +G +            +D  V+I+    +   F  +I  ++   V      +     + 
Sbjct: 53  EIGNISMGSAATALYSLLDETVEITAPEVELVTFQKLIQEYERPCVVVDVEYIEGLEGSN 112

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
            +         + + ++G          +  L+ +        + Q+    +  +ST  +
Sbjct: 113 LLIIEQQDAAIISDLMMGGDGNNP----DAELNELHLSAVSEAMNQMMGSASTSMSTIMQ 168

Query: 156 SSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENV-ASSFVLIIP 202
                    + + L  NT+ +       ++ V  ++ ++TI  V  S  + ++P
Sbjct: 169 GDKVNISPPNAELLTLNTDEIKSRSFQPDDEVVKVSFDLTIGEVIDSEILQLMP 222


>gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 158

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233
           E    + ++   +     F + +P      +L T   ++      ++    L    P  +
Sbjct: 15  EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 74

Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
                +V ++         I      +  +  LK G V+P          +  N + I  
Sbjct: 75  SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGGCFAPEVTIRVNDRIIGQ 134

Query: 287 CELGRVGKNYTIRIT 301
            EL   G  + +RIT
Sbjct: 135 GELIACGNEFMVRIT 149


>gi|255030382|ref|ZP_05302333.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28]
          Length = 199

 Score = 38.9 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93
           ++   + K   +   +++ + +    T      F+   I +   +  +F    L +    
Sbjct: 56  TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115

Query: 94  NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
              I      +I + E L G + +       R LS  E+   K  + +    L     + 
Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174

Query: 154 QESSPNLEDFYDIDYLKKNTNR 175
              SP + +      L + T+ 
Sbjct: 175 HPISPEIVNIETNPALLRVTSP 196


>gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis]
          Length = 307

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
             L     S    E   +P      QL V +   +  +      + +L+ G +I      
Sbjct: 211 NKLEFIGMSHESDELNPEPL-TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 269

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
                L ANG+ +    L  +     +RI 
Sbjct: 270 DGEVRLLANGRLLGHGRLVEIQGRLGVRIE 299


>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 139

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 59  ILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IRITD I   ++  +
Sbjct: 119 KYGIRITDIITPSERMRR 136


>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
          Length = 139

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 59  IMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IRITD I   ++  +
Sbjct: 119 KYGIRITDIITPSERMRR 136


>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 395

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++++++ L  G +I           +  N K I   E+  + +N
Sbjct: 317 LDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 376

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD I+   + 
Sbjct: 377 FGVRVTDIISQSDRL 391


>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
 gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
           3645]
          Length = 212

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   +      L+DV+ +  G V+           +  NG+ I   E+  +  
Sbjct: 137 VRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVLND 196

Query: 295 NYTIRITDRI 304
           N+ +RI + I
Sbjct: 197 NFCVRIAELI 206


>gi|253990918|ref|YP_003042274.1| hypothetical protein PAU_03444 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782368|emb|CAQ85532.1| Hypothetical protein PAU_03444 [Photorhabdus asymbiotica]
          Length = 71

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + V +D  +     TL +++ L+ GQV   ++  ++  IL +  + I +  L +V + + 
Sbjct: 1   MRVKLDVVVANCSMTLDELIHLQKGQVKSLMNFVQSEVILKSGNQVIATGILVKVDEQFC 60

Query: 298 IRITDRINF 306
           + I D++N 
Sbjct: 61  VAI-DQVNQ 68


>gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis
           EO147]
          Length = 326

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V ++  +  ++ T+  + +   G V+P          + ANG+     EL +VG+   + 
Sbjct: 253 VTLEFVLQDERVTVAQLASCHPGLVLPVRGAP-GEVTIRANGRPFGCGELIQVGEQLAVE 311

Query: 300 IT 301
           + 
Sbjct: 312 VK 313


>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
 gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
           39073]
          Length = 395

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 35/76 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + ++I+  +      ++D+++L  G ++      +    ++ NG  I   E+  V +
Sbjct: 315 ILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIVNE 374

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RIT  +   ++ 
Sbjct: 375 NFGVRITHILEPYERI 390


>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
           BAA-613]
          Length = 320

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 42/85 (49%)

Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           +++ I    +K   + +++  R+     ++KD+++LK GQ++    +  + A +  NG+ 
Sbjct: 236 AKEQIGEEKKKLLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGEL 295

Query: 284 IYSCELGRVGKNYTIRITDRINFDQ 308
           I   ++   G  +  RI + +   +
Sbjct: 296 IGRGDVLVTGDRFGARIIEVVGKRE 320


>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
 gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
          Length = 395

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++KD++ L  G ++           +  NGK +   E+  + +N
Sbjct: 317 LDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 376

Query: 296 YTIRITDRINF 306
           + +RIT+ ++ 
Sbjct: 377 FGVRITEIVSP 387


>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
 gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
          Length = 111

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ +   + +  T+L+  +V+ L  G ++    +      +  NG  I   E+  V   
Sbjct: 30  ADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADDLLDIMVNGALIAKGEVVTVNGR 89

Query: 296 YTIRITDRINFDQKS 310
           Y IRI D    + + 
Sbjct: 90  YGIRIVDIAATENRL 104


>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
           JL354]
          Length = 118

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +++V +   +  K   L++++ L    ++           +  NG+ I   E+   G 
Sbjct: 11  IQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEVVAQGN 70

Query: 295 NYTIRITD 302
            + IRI +
Sbjct: 71  RFAIRILE 78


>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
          Length = 410

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 8/184 (4%)

Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
           E       I +     +Q   ++ E     +     DY ++   R   E     +     
Sbjct: 231 ETNQVSEVIQETEKPTSQANESSYEQRNQEQTASTADYYQREEERSVTEAPIREHAYAGG 290

Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
               S+     P     +   +  +  +  E  + +  +P       L++ +   + L +
Sbjct: 291 HERPSN-----PAPRTQQAVNVQPAVFSSFETTTVEESEPNNLNML-LDIPLQVTVELGR 344

Query: 251 T--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           T  ++KD++ L  G +I           +  N K I   E+  + +++ +R+TD ++   
Sbjct: 345 TKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDESFGVRVTDIVSQTD 404

Query: 309 KSLK 312
           +  K
Sbjct: 405 RIRK 408


>gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae]
          Length = 309

 Score = 38.9 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYT 297
            V +   I+     L ++  L  G V+P           L  +G+ + +  L  +G+N  
Sbjct: 229 RVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVVIGENLG 288

Query: 298 IRITDR 303
           +RI   
Sbjct: 289 VRIAHT 294


>gi|157962536|ref|YP_001502570.1| pyridoxal-dependent decarboxylase [Shewanella pealeana ATCC 700345]
 gi|157847536|gb|ABV88035.1| Pyridoxal-dependent decarboxylase [Shewanella pealeana ATCC 700345]
          Length = 548

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+  + +LS +E+ +++  +  +   +        E   + + ++     +  ++   
Sbjct: 18  TVPEAPDSTLSVIEQNISQNLMGFLQESVVAVEKPLSEVELDFQQYHIPAAPQFVSDYAD 77

Query: 178 NEF--VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
           N    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+ 
Sbjct: 78  NMMQTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQV 137

Query: 236 Y 236
            
Sbjct: 138 L 138


>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
 gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
          Length = 155

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 75  IMDIPVKLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVVDD 134

Query: 295 NYTIRITDRINFDQK 309
            Y IRIT+ I   ++
Sbjct: 135 KYGIRITEIITPSER 149


>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
           Full=Flagellar motor switch protein MopA
          Length = 106

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 26  ILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD 85

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 86  KYGVRITDIITPSERMRR 103


>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
 gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
          Length = 172

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%)

Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
              +   +  S++ +     P       + V I   +      +++++ L  G VI    
Sbjct: 67  VRAAPMEEFSSDSVNTSKGSPDLDVIMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDR 126

Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                  +  NG  I   E+  V   + IR+TD ++  ++  +
Sbjct: 127 LAGEPLDVLVNGTLIAHGEVVMVNDKFGIRLTDVMSPGERIKR 169


>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
           11-1]
          Length = 109

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G VI           +  NG  I   E+  +  
Sbjct: 30  ILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVVVIND 89

Query: 295 NYTIRITDRINFDQKSLK 312
            + +R+TD ++  ++  +
Sbjct: 90  RFGVRLTDVVSPSERIRR 107


>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
 gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 396

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 35/76 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K ++KD++ L  G ++      +    +  NGK++   E+  + +
Sbjct: 317 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 376

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RI   I+ + + 
Sbjct: 377 NFGVRIKSIISSEDRI 392


>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
 gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
           700345]
          Length = 118

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V +   +   + +L ++  +  G V+           +  NG  +   E+  V   Y
Sbjct: 42  QLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 101

Query: 297 TIRITD 302
            +R+ +
Sbjct: 102 GVRLLE 107


>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
 gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
          Length = 392

 Score = 38.5 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 35/76 (46%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I   +   K ++KD++ L  G ++      +    +  NGK++   E+  + +
Sbjct: 313 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 372

Query: 295 NYTIRITDRINFDQKS 310
           N+ +RI   I+ + + 
Sbjct: 373 NFGVRIKSIISSEDRI 388


>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 399

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++KD++ L  G ++           +  NGK +   E+  + +N
Sbjct: 321 LDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 380

Query: 296 YTIRITDRINF 306
           + +RIT+ ++ 
Sbjct: 381 FGVRITEIVSP 391


>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
 gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
           WPP163]
          Length = 137

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 212 ISLSSQNKSENQSEDLIDPFA-----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
              ++  +   +S D  DP            + V +   +   K T+K+++ L  G V+ 
Sbjct: 29  EKPAATTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVA 88

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     +  NG  I   E+  V   Y +RITD +   ++  +
Sbjct: 89  LDGLAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIMTPSERMRR 134


>gi|299066543|emb|CBJ37733.1| protein of unknown function [Ralstonia solanacearum CMR15]
          Length = 321

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
            +++ +SE     ++   + +   + V ++      +  L  +  L++G VI   H  + 
Sbjct: 231 AATERRSEALLTPVLSALSAEPLSMTVELNPV----ELGLGTLTGLQVGDVIRIPHALEM 286

Query: 274 CAILSANGKEIY-SCELGRVGKNYTI 298
             ++ A+   +     LGR+     I
Sbjct: 287 PLLVRADDGALLCQAFLGRLDGQKAI 312


>gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia
           phytofirmans PsJN]
 gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia
           phytofirmans PsJN]
          Length = 327

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRIT 301
           D  I     TL +++ L+ G  +       +    L   G      EL  +     +RI 
Sbjct: 256 DAVIGTLSLTLDELMRLRTGSTVSLQQPVGRHAIRLLCQGIPFARGELIDIDDALGVRIV 315

Query: 302 DRINFDQK 309
           D  +    
Sbjct: 316 DLAHMSDT 323


>gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246]
          Length = 117

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                + + I  R+      + +++TL  G V+           L+  G      E+  V
Sbjct: 37  ESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVV 96

Query: 293 GKNYTIRITDRINF 306
           G+++ +RI + +  
Sbjct: 97  GEHFAVRIKNLLPP 110


>gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ubonensis Bu]
          Length = 211

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVI 265
           ++   +  +  +     S D     A +T     V++   +      L ++  L+ G VI
Sbjct: 105 IREMPLEPTRTDTPPTLSPDAPPHEAPRTLDALAVDLRFELPSTSMPLGELAVLQPGAVI 164

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I +  L  VG+   +R+
Sbjct: 165 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 200


>gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 109

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 34/85 (40%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
                QSED+          L   +   + + + T++ ++ L+ G V+     + T   L
Sbjct: 23  ESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDLPL 82

Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
             NG  +   E   V   Y +R+T+
Sbjct: 83  RVNGALLAWSEFEVVDNRYGVRLTE 107


>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 98

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 34/70 (48%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           ++   + VN+  R+  K+  +KD+  L +G ++    +      +  + K++   E   +
Sbjct: 27  KQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGIGEAILM 86

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 87  DENFGIVISE 96


>gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 356

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
             +   + P  ++ +       ++N   ++     D        L + +  ++   + TL
Sbjct: 245 GETLEWLGPLRSVTRHHAAHTFNRNDLMSEITASPD-LDTSLDDLPLTLVCQLGTVELTL 303

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             +  +  G ++P          L  NG+ I   +L  +G    +R
Sbjct: 304 AQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLVSIGDGLGVR 349


>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
 gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
           L-1]
          Length = 112

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ +   + +  T+L+  +V+ L  G V+    +      +  NG  I   E+  V   
Sbjct: 31  ADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVTVNGR 90

Query: 296 YTIRITDRINFDQKS 310
           Y IRI +    + + 
Sbjct: 91  YGIRIVEIAAAESRL 105


>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
 gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
           43541]
          Length = 393

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++KD++ L  G ++           +  NGK +   E+  + +N
Sbjct: 315 LDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 374

Query: 296 YTIRITDRINF 306
           + +RIT+ ++ 
Sbjct: 375 FGVRITEIVSP 385


>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 415

 Score = 38.5 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++ +   + L +T   +KD++ L  G +I           +  N K I   E+  + +N
Sbjct: 337 MDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 396

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD ++   + 
Sbjct: 397 FGVRVTDIVSQWDRI 411


>gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 356

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
             +   + P  ++ +       ++N   ++     D        L + +  ++   + TL
Sbjct: 245 GETLEWLGPLRSVTRHHAAHTFNRNDLMSEITASPD-LDTSLDDLPLTLVCQLGTVELTL 303

Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
             +  +  G ++P          L  NG+ I   +L  +G    +R
Sbjct: 304 AQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLVSIGDGLGVR 349


>gi|300693141|ref|YP_003749114.1| hypothetical protein RPSI07_mp0100 [Ralstonia solanacearum PSI07]
 gi|299075178|emb|CBJ34461.1| conserved membrane protein of unknown function [Ralstonia
           solanacearum PSI07]
          Length = 361

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 111 LLGASHETIPQLYNRS----LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
           LLGA+  +      R+    LS++E +  + T+  IS  L     T   +        D 
Sbjct: 265 LLGAARASSDAPAARATADVLSSMEDRRIRDTLIGISRALR--FGTV--ARLTHNRPADS 320

Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
           +   +    L+ E    +  +  IE +   F+   PQ
Sbjct: 321 EPASRLPGPLTAESALALRFSSEIEQLRGEFLATAPQ 357


>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
 gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
          Length = 80

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 25/73 (34%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +++V++   +      +  V+ L  G +I     E+    +  N   I S  +       
Sbjct: 6   KVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMVNRNRI 65

Query: 297 TIRITDRINFDQK 309
           T+ +   +     
Sbjct: 66  TVEVKQMLPRAPD 78


>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
 gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
 gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
 gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
 gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
 gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
 gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
 gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
 gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
 gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
 gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
 gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
          Length = 155

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 39/100 (39%)

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +    S     N   +L  P       + V+I   +     T+++++ L  G VI     
Sbjct: 52  MEEFGSAPPPINLPANLDGPNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRL 111

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                 +  NG  I   E+  V + + IR+TD I+  ++ 
Sbjct: 112 AGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERI 151


>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
 gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
 gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
 gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
 gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
 gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
 gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
 gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
          Length = 118

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V +   +   + +L ++  +  G V+           +  NG  +   E+  V   Y
Sbjct: 42  QLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 101

Query: 297 TIRITD 302
            +R+ +
Sbjct: 102 GVRLLE 107


>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
 gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
 gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
 gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
 gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
 gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
 gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
 gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
 gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
 gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
          Length = 123

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 127

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFL 268
            +L+ QN + +  +  +  F+ +    L++ +   + L   K T+K+++ L  G V+   
Sbjct: 21  EALNEQNAAGSTEQTAVPQFSEEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLD 80

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                   +  NG  I   E+  V   + IRITD I   ++  +
Sbjct: 81  GLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSERMHR 124


>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 83

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 3   IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 62

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 63  KYGVRITDIITPSERMRR 80


>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
 gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
           11568]
          Length = 83

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 27/72 (37%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   ++V I   +      ++ ++ +  G VIP    EK    + AN   +   E+    
Sbjct: 3   QIEAVDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEIRD 62

Query: 294 KNYTIRITDRIN 305
               I +T   +
Sbjct: 63  DRIAITVTRPAD 74


>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
           Ellin345]
          Length = 252

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L+  L    +   ++N S    +       +L+V +  R   ++  L+D++ L+ G V+ 
Sbjct: 152 LRKKLQPDPAAVSADNHSVQSTNLDLLLDVELDVTL--RFGQREMLLQDILELQSGSVVE 209

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
                +    L  +G+ I    +  V  NY +R+ +
Sbjct: 210 LDREIQDPVELLLDGRVIARGSVVVVDGNYGLRVAE 245


>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
 gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 131

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
             ++ V +   +      + D++ L  G VIP  HR      +  NG+
Sbjct: 51  ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGR 98


>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J2-064]
          Length = 99

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
 gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Exiguobacterium sp. AT1b]
          Length = 376

 Score = 38.5 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V ++  + L +T  ++++V+ L  G +I           +  N + I   E+  + +N+
Sbjct: 300 DVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGEPVDIYVNQQRIARGEVVVIEENF 359

Query: 297 TIRITDRINFDQKS 310
            +R+T+ I   ++ 
Sbjct: 360 GVRVTEIIQPHERI 373


>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 351

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T     +    ++N S ++  D  D       +L + +  ++   
Sbjct: 236 ARHQGETLEWLGPLRTFSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344


>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
 gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
           ammonificans HB-1]
          Length = 83

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 28/72 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + + I   +  K      V+ LK G +I    +      ++ N +E    EL  +
Sbjct: 12  ERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQEFGIGELIVI 71

Query: 293 GKNYTIRITDRI 304
               ++R+ D +
Sbjct: 72  NDKVSLRLVDLV 83


>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
 gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
           12198]
          Length = 112

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           ED+I  +      +       +   K T+K+++  + G VI           +  N + +
Sbjct: 21  EDMIQSYEG-LLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIV 79

Query: 285 YSCELGRVGKNYTIRITDRINFD 307
              E+    KN  IR+ + ++ +
Sbjct: 80  GRGEVMVYEKNLAIRLNEILDSN 102


>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
 gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
           11218]
          Length = 128

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 31/74 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   ++ ++  LK++++++   VI    +E     +  NG    +  +     
Sbjct: 53  IRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDG 112

Query: 295 NYTIRITDRINFDQ 308
            Y +++   +N + 
Sbjct: 113 KYGVQVLALVNNEH 126


>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
          Length = 137

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            Y +RITD I   ++  +
Sbjct: 117 KYGVRITDIITPSERMRR 134


>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 99

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
 gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 385

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   + L +T   + +++    G +I           +  NG+ + + E+  + +NY
Sbjct: 308 DVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVVIDENY 367

Query: 297 TIRITDRINFDQKS 310
            IR+TD +N  ++ 
Sbjct: 368 GIRVTDIVNPAKRL 381


>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. campestris]
          Length = 112

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 36/92 (39%)

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
             + +D  D        + V +   +   +  +++++ L  G V+           +  N
Sbjct: 19  AERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVN 78

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G  I   E+  +   + IR+TD ++  ++  +
Sbjct: 79  GTLIAHGEVVVINDRFGIRLTDVVSPSERIRR 110


>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
 gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-175]
 gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
 gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
 gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 99

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC2047]
          Length = 132

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%)

Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
            P       + V +   +     T+++++ L  G VI           +  NG  I   E
Sbjct: 47  SPELDVILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGE 106

Query: 289 LGRVGKNYTIRITDRINFDQKS 310
           +  V + + IR+TD ++  ++ 
Sbjct: 107 VVVVNEKFGIRLTDVVSPSERI 128


>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
 gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
          Length = 155

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           +  +    S  ++      L  P       + V+I   +     T+++++ L  G VI  
Sbjct: 49  RAPMEEFGSAPQASGLPVSLDGPNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIEL 108

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                    +  NG  I   E+  V + + IR+TD I+  ++ 
Sbjct: 109 DRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERI 151


>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
           1988]
 gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
 gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
 gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
 gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
 gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
 gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
 gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
 gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
           monocytogenes J2818]
          Length = 99

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 28  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 88  DENFGIVISE 97


>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
 gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
          Length = 420

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95
            +G +            ++  V+I+  +    +   +   F +            +    
Sbjct: 62  EIGNISFGSAATALSTLLNQKVEITTPTLSLVESKELPAEFPQPHVAVHVEYTEGFEGMN 121

Query: 96  FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151
            +         + + +LG             LS +     +  + Q+    S  ++   +
Sbjct: 122 LLVIKTGDAAIIADLMLGGDGTNPASD----LSDMHVSAVQEAMNQMMGSASTSMSTVFN 177

Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
              + SP   D  D+ +    +N   ++ +  I+  + I  
Sbjct: 178 KRVDISPPGIDLMDLKHNVGTSNVPEDQILVKISFRLKIGE 218


>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 351

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 1/110 (0%)

Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
             +   +   + P  T     +    ++N S ++  D  D       +L + +  ++   
Sbjct: 236 ARHQGETLEWLGPLRTFSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294

Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + TL  +  +  G ++P          L  NG+ I   EL  +G    +R
Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344


>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 145

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 65  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 124

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 125 KFGVRITDIITPSERMRR 142


>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
 gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
           BisA53]
          Length = 132

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
             ++ V +   +      + D++ L  G VIP  HR      +  NG+
Sbjct: 51  ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGR 98


>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
 gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
          Length = 185

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%)

Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
                      D   P       + V+I   +   +  +++++ L  G VI         
Sbjct: 86  EFGEGENQPKSDGKSPELDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEP 145

Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             +  NG  I   E+  V   + IR+TD I+  ++ 
Sbjct: 146 LDVLVNGTLIAHGEVVMVNDKFGIRLTDVISQAERI 181


>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 100

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 29  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 88

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 89  DENFGIVISE 98


>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes Clip81459]
 gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
           monocytogenes FSL J1-208]
 gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
           L99]
 gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
 gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
 gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
 gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 100

 Score = 38.1 bits (87), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           R+   + VN+  R+  K+  + D+  L IG V+    +      +  + K++   E   +
Sbjct: 29  RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 88

Query: 293 GKNYTIRITD 302
            +N+ I I++
Sbjct: 89  DENFGIVISE 98


>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
           16/4]
          Length = 394

 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 201 IPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVV 257
           +PQ T+ ++    +      S   +++ ID        L+V +D  + L +T  T++D++
Sbjct: 292 MPQPTINVQPAQFTPFGPGFSAQFAQENIDLI------LDVPLDVTVELGRTNKTIQDIL 345

Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               G +I           +  NGK +   E+  + +++ +RIT+ I  
Sbjct: 346 DFAPGTIIELNKIAGEPIDVLVNGKYVAKGEVVVIEESFGVRITEIIKE 394


>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
 gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
           12168]
          Length = 396

 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T   +K+++ +  G +I           +  N K I   E+  + +N
Sbjct: 320 MDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDEN 379

Query: 296 YTIRITDRINF 306
           + +R+T+ ++ 
Sbjct: 380 FGVRVTEILSP 390


>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
 gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
          Length = 115

 Score = 38.1 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 30/76 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 40  EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
            +   + +T+ I  D 
Sbjct: 100 DERLGVTMTEIIKNDH 115


>gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
          Length = 388

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 33/97 (34%)

Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
            T+L          +   N +          T +L V +   +  +  T++DV TL  G 
Sbjct: 284 ATILSVLNPEEGPMSDENNTAAGAAPSEGVDTGELEVTLTFELERRLMTVRDVETLAPGY 343

Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
              F         L ANGK +    L  +     +++
Sbjct: 344 TFAFGGDALAPVTLYANGKSVGKGRLVDLNGTLGVQV 380


>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
 gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
          Length = 137

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             L   S Q ++         P       + V +   +     ++++++ L  G VI   
Sbjct: 32  PELEDFSQQARAAAIGGGPGTPNLDVILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELD 91

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                   +  NG  I   E+  V + + IR+TD I+  ++ 
Sbjct: 92  RLAGEPLDVMVNGTLIAHGEVVVVNEKFGIRLTDVISPQERI 133


>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
           degradans 2-40]
 gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
          Length = 135

 Score = 38.1 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 56  ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 115

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 116 KFGIRMTDVISPSERI 131


>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
 gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
          Length = 404

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 79/211 (37%), Gaps = 7/211 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +  +            ++  V+IS        +  I+  +++  VF +       + + 
Sbjct: 37  EIANISMGTAATTLFSLVNRRVEISTPVVSFSNWDKIVDEYEKPCVFIKIGYTQGLNGSN 96

Query: 96  FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +      V  + + ++G     I  ++    LS + + + +  +   +  L+  ++ T 
Sbjct: 97  ILVLKEKDVKIITDLMMGGDGTNINGEIGELHLSAISEAMNQM-MGSSATSLSSMLNRTI 155

Query: 155 ESSPNLEDFYDIDYL--KKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT-T 210
           + SP + +  D+     +   +   +E    I+ +M I ++  S  + + P   + +   
Sbjct: 156 DISPPIAEVVDLKNTLNEGEIDSFLSEEFVKISFHMEIGDLVDSEIMQLYPPAFVKEMCK 215

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
            +S + +  +++ +ED+       T    + 
Sbjct: 216 GVSQNMELDTQSVTEDVPQSSNTATQAAPIQ 246



 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 65/180 (36%), Gaps = 5/180 (2%)

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E    +     +    N          P  +D   ++    N+  + NE +   NMN 
Sbjct: 220 NMELD-TQSVTEDVPQSSNTATQAAPIQQP--QDSGSMNNASANSQGMINENMMNSNMNS 276

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
                       +  + ++   +   ++Q        + +         ++V ++  + L
Sbjct: 277 QNMMNQGMMNQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVEL 336

Query: 249 KKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +T  ++ +++    G++I           +  NGK +   E+  + +++ +RIT+ +N 
Sbjct: 337 GRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNS 396


>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSA 279
           +  E  +         +++ +   + L +T   +KD++ L  G +I           +  
Sbjct: 279 DADEQTVSEKENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVDILV 338

Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           NGK I   E+  + +N+ +RI D +   ++ 
Sbjct: 339 NGKFIAKGEVVVIDENFGVRILDIVKQSKRI 369


>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
 gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
          Length = 122

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  +   Y +R
Sbjct: 49  VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108

Query: 300 ITDRINF 306
           + +  + 
Sbjct: 109 LIEVHDS 115


>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
 gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
          Length = 122

 Score = 38.1 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  +   Y +R
Sbjct: 49  VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108

Query: 300 ITDRINF 306
           + D  + 
Sbjct: 109 LIDVHDS 115


>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
 gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 348

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 95/308 (30%), Gaps = 37/308 (12%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSN 94
            S             +      V IS    +            +  V +       ++ +
Sbjct: 46  QSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFSRVIPDMLVATVIDFEGEFAGD 105

Query: 95  FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
                +      L+  +   SHE   Q+ +  LS V + + +   AQ+S +  + +    
Sbjct: 106 HLFLMAPEFAQKLVNLV---SHEDNDQIDDMGLSVVSETITQYVSAQLSTLEARNVQNVS 162

Query: 155 ESSPNLEDFYDIDYLKKNTNRLSN---------------EFVTTINMNMTIENVASSFVL 199
             +P          ++    RL                 E V+   M   IE +  +   
Sbjct: 163 -VAPAESVQVPKAMVRFPPQRLCVFTYTVELDGTSYTLWELVSEQLMVRIIERMGGAMQR 221

Query: 200 IIPQETLLKTTL----ISLSSQNKSENQSEDLIDPFARKT---------YQLNVNIDTRI 246
             PQ  +  + +    + +     S +       P                ++V ++  +
Sbjct: 222 --PQAQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTV 279

Query: 247 NLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
            L +    +KD++ +  G +I           +  N K I   E+  + +N+ +R+T+ +
Sbjct: 280 ELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVTEIL 339

Query: 305 NFDQKSLK 312
           +  ++   
Sbjct: 340 SPGERIAD 347


>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
 gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum JW20]
          Length = 398

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V +   + L +T   +KD++    G +I           +  NGK I   E+  + ++
Sbjct: 324 MDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDES 383

Query: 296 YTIRITDRINFDQKS 310
           + +RITD ++  ++ 
Sbjct: 384 FGVRITDILHPSKRL 398


>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 2360]
 gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Clostridium thermocellum DSM 1313]
          Length = 406

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V +   + L +T   +KD++    G +I           +  NGK I   E+  + ++
Sbjct: 332 MDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDES 391

Query: 296 YTIRITDRINFDQKS 310
           + +RITD ++  ++ 
Sbjct: 392 FGVRITDILHPSKRL 406


>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 156

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 38/101 (37%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              +  +    Q ++  D        + V +   +   +  +++++ L  G V+      
Sbjct: 54  SPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGA 113

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                +  NG  I   E+  +   + IR+TD ++  ++  +
Sbjct: 114 GEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRR 154


>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
           27405]
 gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
           27405]
          Length = 406

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V +   + L +T   +KD++    G +I           +  NGK I   E+  + ++
Sbjct: 332 MDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDES 391

Query: 296 YTIRITDRINFDQKS 310
           + +RITD ++  ++ 
Sbjct: 392 FGVRITDILHPSKRL 406


>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
 gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
           43531]
          Length = 396

 Score = 38.1 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++K+++ L  G ++           +  NGK +   E+  + +N
Sbjct: 318 LDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 377

Query: 296 YTIRITDRINF 306
           + +RIT+ ++ 
Sbjct: 378 FGVRITEIVSP 388


>gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 379

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRVG 293
             QL V +  ++   + TL ++  L+ G V P   +       +  N +     EL  +G
Sbjct: 305 LSQLPVELSLQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG 364

Query: 294 KNYTIRITD 302
               +RIT+
Sbjct: 365 NQLGVRITE 373


>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
 gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
          Length = 136

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K +++L  G V+           +  NG  I   E+  V  
Sbjct: 56  IMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 115

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IRITD I   ++  +
Sbjct: 116 KYGIRITDIITPSERMRR 133


>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
 gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
           piezotolerans WP3]
          Length = 115

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V +   +   + +L ++  +  G V+           +  NG  +   E+  V   Y
Sbjct: 39  QLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 98

Query: 297 TIRITD 302
            +R+ +
Sbjct: 99  GVRLLE 104


>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
 gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           sp. 4-46]
          Length = 101

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             +L V++   +   +  +  ++ +  G VI     +     + AN   I   ++   G 
Sbjct: 4   LEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINFDQ 308
             ++ +T+ I    
Sbjct: 64  RISVEVTELIRKAD 77


>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
 gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
          Length = 436

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           +++ +   + L +T   +KD++ L  G +I           +  N K I   E+  + +N
Sbjct: 358 MDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 417

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD ++   + 
Sbjct: 418 FGVRVTDIVSQWDRI 432


>gi|167905067|ref|ZP_02492272.1| hypothetical protein BpseN_22674 [Burkholderia pseudomallei NCTC
           13177]
          Length = 83

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
           +++ +   +   P    + QL + +  ++        DV+ L+ G V+P      T A +
Sbjct: 2   SRARSVKRERPSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARV 55

Query: 278 SANGKEIYSCELGRVGKNYTI 298
             +  ++++  +        +
Sbjct: 56  MTHDAQLFTASIAEHNGKLCL 76


>gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           nodulans ORS 2060]
 gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium
           nodulans ORS 2060]
          Length = 101

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 27/72 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L V++   +   +  +  ++ +  G VI     +     + AN   I   ++   G 
Sbjct: 4   LEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVVTGN 63

Query: 295 NYTIRITDRINF 306
             ++ +T+ I  
Sbjct: 64  RISVEVTELIRK 75


>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
 gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
          Length = 250

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +V+++ R+ L  ++  L DV+ L  G V+           + ANG+ I   E   + + 
Sbjct: 172 ADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQ 231

Query: 296 YTIRITDRINFDQK 309
           + +RIT+  +   +
Sbjct: 232 FGVRITNLASEGHR 245


>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
 gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
 gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
 gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
          Length = 136

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K +++L  G V+           +  NG  I   E+  V  
Sbjct: 56  IMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 115

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IRITD I   ++  +
Sbjct: 116 KYGIRITDIITPSERMRR 133


>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
 gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
           carbinolicus DSM 2380]
          Length = 103

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ ++  + +      +KD++ L+ G +I           L  N + I   E   V   
Sbjct: 25  LDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVMVKDR 84

Query: 296 YTIRITDRINFDQKS 310
           Y +R+TD ++  ++ 
Sbjct: 85  YGLRLTDVVSPAERL 99


>gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica]
 gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica]
 gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica]
 gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica]
 gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703]
 gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica]
 gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)]
 gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 307

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               QL V +   +  +      + +L+ G +I           L ANG+ +    L  +
Sbjct: 231 TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEI 290

Query: 293 GKNYTIRIT 301
                +RI 
Sbjct: 291 QGRLGVRIE 299


>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
 gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
          Length = 119

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  ++          +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
 gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
           A6]
          Length = 238

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + +++   I   + +++D + L+ G+VI         A +  NG+ I   E+  V +
Sbjct: 162 ISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQ 221

Query: 295 NYTIRITDRINF 306
           +Y +RIT  ++ 
Sbjct: 222 DYAVRITRILDT 233


>gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to
           flagellar export components) [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 307

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
               QL V +   +  +      + +L+ G +I           L ANG+ +    L  +
Sbjct: 231 TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEI 290

Query: 293 GKNYTIRIT 301
                +RI 
Sbjct: 291 QGRLGVRIE 299


>gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 303

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++ T+   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
 gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
           UT26S]
          Length = 112

 Score = 37.7 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ +   + +  T+L+  +V+ L  G V+    +      +  NG  I   E+  V   
Sbjct: 31  ADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVVTVNGR 90

Query: 296 YTIRITDRINFDQKS 310
           Y IRI +    + + 
Sbjct: 91  YGIRIVEIAAAESRL 105


>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
 gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
          Length = 112

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 38/101 (37%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
              +  +    Q ++  D        + V +   +   +  +++++ L  G V+      
Sbjct: 10  SPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGA 69

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                +  NG  I   E+  +   + IR+TD ++  ++  +
Sbjct: 70  GEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRR 110


>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
 gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
          Length = 236

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            +V+++ R+ L  ++  L DV+ L  G V+           + ANG+ I   E   + + 
Sbjct: 158 ADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQ 217

Query: 296 YTIRITDRINFDQK 309
           + +RIT+  +   +
Sbjct: 218 FGVRITNLASEGHR 231


>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
 gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
          Length = 153

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  V  
Sbjct: 74  IMDIPVVLSMELGNTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVND 133

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IR+TD ++  ++  +
Sbjct: 134 KYGIRLTDVVSPSERIRR 151


>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 123

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 27/75 (36%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
           +    + +     +   +  L  ++  + G VI              NG+ I   E+   
Sbjct: 39  KNLLDMEIIFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98

Query: 293 GKNYTIRITDRINFD 307
            +N  IR+ + ++ +
Sbjct: 99  ERNLAIRLNEILDSN 113


>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 127

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFL 268
            +++ Q+ +          F+ +    L++ +   + L   K T+K+++ L  G V+   
Sbjct: 21  EAMTEQHAAGITDTMAAPQFSDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLD 80

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                   +  NG  I   E+  V   + IRITD I   ++  +
Sbjct: 81  GLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSERMHR 124


>gi|295666972|ref|XP_002794036.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226277689|gb|EEH33255.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1431

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 11/199 (5%)

Query: 88   LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA--KRTIAQISAV 145
              +   +  I    ++V+ ++EN L     T  Q    +    E  L+  + +     A 
Sbjct: 913  ARNDDFHIIIVAKTDMVVKIVENYLIGKGFTHTQPAADTSGDTELALSSGQLSFGVRVAT 972

Query: 146  LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF----VTTINMNMTIENVASSFVLII 201
              +     +     +      D       ++ + F         + + + N        +
Sbjct: 973  DERISQPYKTPVAIIALDNSFDAENPAIRQIRSSFSPTDSLLPVIRLLVSNTLEHIERCL 1032

Query: 202  PQ-ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
            PQ   L K  L+   +Q+ S+   E   D    +   + V +     L+      V ++ 
Sbjct: 1033 PQTSELTKLHLLVKCTQDLSDTAGELQDDALGAQENAVEVAL----YLRTEPSARVWSVA 1088

Query: 261  IGQVIPFLHREKTCAILSA 279
              ++IP    + T   L A
Sbjct: 1089 AVELIPVETPDGTPIALEA 1107


>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
 gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
          Length = 138

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 58  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 117

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 118 KFGVRITDIITPSERMRR 135


>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 398

 Score = 37.7 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ ++  + L +T  ++KD++ L  G +I           +  N + I   E+  + +N
Sbjct: 321 LDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVVVIDEN 380

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD ++  ++ 
Sbjct: 381 FGVRVTDIVSKRERL 395


>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
 gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
          Length = 155

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + V +   +   + T+K ++ L  G V+           +  NG  I   E+  V
Sbjct: 72  ERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVV 131

Query: 293 GKNYTIRITDRINFDQKS 310
            + Y IR+TD +   ++ 
Sbjct: 132 NEKYGIRLTDIVTPSERM 149


>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
 gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
           defluvii]
          Length = 124

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 42/99 (42%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +  +S    +NQ+    +        + + +  +I   +  +++++ L  G VI      
Sbjct: 22  VQPTSFPPVDNQNAVPANKNIEFVLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLA 81

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
                +  N K +   E+  V + + IR+TD ++ +Q+ 
Sbjct: 82  GEPMEVLVNNKLVARGEVVVVNEKFGIRLTDVVSPNQRI 120


>gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 303

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++ T+   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|254565519|ref|XP_002489870.1| Protein component of the large (60S) ribosomal subunit, identical
           to Rpl2Bp [Pichia pastoris GS115]
 gi|254572806|ref|XP_002493512.1| Protein component of the large (60S) ribosomal subunit [Pichia
           pastoris GS115]
 gi|238029666|emb|CAY67589.1| Protein component of the large (60S) ribosomal subunit, identical
           to Rpl2Bp [Pichia pastoris GS115]
 gi|238033311|emb|CAY71333.1| Protein component of the large (60S) ribosomal subunit [Pichia
           pastoris GS115]
 gi|328350284|emb|CCA36684.1| 60S ribosomal protein L8 [Pichia pastoris CBS 7435]
 gi|328354663|emb|CCA41060.1| 60S ribosomal protein L8 [Pichia pastoris CBS 7435]
          Length = 254

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
            +L +G ++P     +   I +   K      +GR   NY I I   +  ++  +K
Sbjct: 94  ASLNVGNILPLGALPEGTIISNVEAKPGDKGTIGRTSGNYVIVIGHNVEENKTRVK 149


>gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
 gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria AMMD]
          Length = 381

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    +   S    +   D   R    L V++   +      L ++ TL+ G VI
Sbjct: 275 IREMPLEPTRTDTPSATTHDASADDAPRSLDSLAVDLRFELPPTSIPLGELGTLQPGAVI 334

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I + +L  VG+   +R+
Sbjct: 335 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 370


>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
 gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
          Length = 137

 Score = 37.7 bits (86), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 57  ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116

Query: 295 NYTIRITDRINFDQKSLK 312
            + +RITD I   ++  +
Sbjct: 117 KFGVRITDIITPSERMRR 134


>gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 346

 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
           QE + +T  +   + +  ++ + +   P      +L V +          L ++  L+ G
Sbjct: 244 QEQVSQTPSVPPVAHSVDDDPAPNESSPIW--VGELPVELSFAFEPLALKLAELSALRPG 301

Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
            V+P         ++ ANG+ +   EL  V       +T
Sbjct: 302 DVVPLESG--VRLLIHANGRPVGEAELVEVEGVLAAEVT 338


>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
           SS3/4]
          Length = 445

 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 2/102 (1%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVI 265
           +  LI  ++    E+   +  +  A +   + V ++  + + +T   +KD++    G ++
Sbjct: 338 EPALIRPANAPGLESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLV 397

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
                    A L  NG+ +   ++  V  N+ IRITD +  D
Sbjct: 398 VLDKMAGEQADLYVNGQCVARGDIVVVEDNFGIRITDIVTRD 439


>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
          Length = 404

 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 65/180 (36%), Gaps = 5/180 (2%)

Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
            +E    +     +    N          P  +D   ++    N+  + NE +   NMN 
Sbjct: 220 NMELD-TQSVTEDVPQSSNTATQAAPIQQP--QDSGSMNNASANSQGMINENMMNSNMNS 276

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
                       +  + ++   +   ++Q        + +         ++V ++  + L
Sbjct: 277 QNMMNQGMMNQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVEL 336

Query: 249 KKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
            +T  ++ +++    G++I           +  NGK +   E+  + +++ +RIT+ +N 
Sbjct: 337 GRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNS 396



 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 78/211 (36%), Gaps = 7/211 (3%)

Query: 37  SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95
            +  +            ++  V+IS        +  I+  +++  VF +       + + 
Sbjct: 37  EIANISMGTAATTLFSLVNRRVEISTPVVSFSNWDKIVDEYEKPCVFIKIGYTQGLNGSN 96

Query: 96  FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
            +      V  + + ++G     I  ++    LS + + + +  +   +  L+  ++ T 
Sbjct: 97  ILVLKEKDVKIITDLMMGGDGTNINGEIGELHLSAISEAMNQM-MGSSATSLSSMLNRTI 155

Query: 155 ESSPNLEDFYDIDYL--KKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT-T 210
           + SP + +  D+     +   +   +E    I+ +M I  +  S  + + P   + +   
Sbjct: 156 DISPPIAEVVDLKNTLNEGEIDSFLSEEFVKISFHMEIGELVDSEIMQLYPPAFVKEMCK 215

Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
            +S + +  +++ +ED+       T    + 
Sbjct: 216 GVSQNMELDTQSVTEDVPQSSNTATQAAPIQ 246


>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 109

 Score = 37.7 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 34/84 (40%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           +   ++  L+  +     ++DL +       ++ V +   +      + +++ L  G VI
Sbjct: 1   MSDESMTDLNMDHGETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVI 60

Query: 266 PFLHREKTCAILSANGKEIYSCEL 289
           P  HR      +  NG+ I   E+
Sbjct: 61  PLDHRVGEPVDIVVNGRVIARGEV 84


>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
 gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
           B316]
          Length = 412

 Score = 37.3 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V ++  + L +T   + D++    G +I           +  NGK +   E+  + +++
Sbjct: 344 DVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEVVVIEESF 403

Query: 297 TIRITDRIN 305
            +R+T+ + 
Sbjct: 404 GVRVTEIVQ 412


>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
 gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
          Length = 109

 Score = 37.3 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           N+D  +     TL++V+ LK G ++           +  N   + + E+  +  N+ 
Sbjct: 30  NLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLATAEIVVIEDNFA 86


>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
 gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus sp. JDR-2]
          Length = 421

 Score = 37.3 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ +   + L +T   +KD++ L  G +I           +  N K I   E+  + +N
Sbjct: 343 LDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 402

Query: 296 YTIRITDRINFDQKS 310
           + +R+TD ++   + 
Sbjct: 403 FGVRVTDIVSQWDRI 417


>gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 299

 Score = 37.3 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 225 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 284

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 285 GVEIHEWLSES 295


>gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 261

 Score = 37.3 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 187 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 246

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 247 GVEIHEWLSES 257


>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 93

 Score = 37.3 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              ++V +   +   +  LKDV+ L    V+           +  NGK I   E+   G 
Sbjct: 11  IMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVVAQGD 70

Query: 295 NYTIRITDRINFD 307
            + +RI + +  D
Sbjct: 71  RFGLRIVELVGQD 83


>gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 303

 Score = 37.3 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
          Length = 393

 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T   +K+++ +  G +I           +  N K I   E+  + ++
Sbjct: 316 MDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES 375

Query: 296 YTIRITDRINFDQKSLK 312
           + +RIT+ ++  ++   
Sbjct: 376 FGVRITEILSPAERISD 392


>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
 gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
          Length = 150

 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   + T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 71  ILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 130

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 131 KFGIRMTDVISPSERI 146


>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
 gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB108]
 gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
           03BB102]
 gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
          Length = 119

 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
 gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
 gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
           35405]
          Length = 393

 Score = 37.3 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T   +K+++ +  G +I           +  N K I   E+  + ++
Sbjct: 316 MDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES 375

Query: 296 YTIRITDRINFDQKSLK 312
           + +RIT+ ++  ++   
Sbjct: 376 FGVRITEILSPAERISD 392


>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
 gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
           12260]
          Length = 374

 Score = 37.3 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 34/79 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   + T+ +V+ +  G V+           +  NGK +   E+  + +
Sbjct: 294 IVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVVVIDE 353

Query: 295 NYTIRITDRINFDQKSLKN 313
           ++ IR+T+ ++  ++    
Sbjct: 354 SFGIRVTEIVSRAERIRSM 372


>gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 303

 Score = 37.3 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 37.3 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|149189862|ref|ZP_01868142.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
 gi|148836348|gb|EDL53305.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
          Length = 270

 Score = 37.3 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 75/237 (31%), Gaps = 30/237 (12%)

Query: 62  YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
                    + +  +  +    S    S      ++     +++ L +        T  +
Sbjct: 54  LVELDHVSLTELPQTNVDVTSVSVLKHSD-DGMLYVSMEPTMLMRLSDQFY----STSME 108

Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
                L+  + +L    + +I+   +Q I+   E++    +F  I  +      ++ +  
Sbjct: 109 RSGGELTNSDLRL----LQRIAKCASQWIAP--ETTWKQHEFEVIPGIG-----IAAKLS 157

Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
             +     +  V     LI   +TL+    ++ +           +   F    ++  V 
Sbjct: 158 IYVRSQQALLAVTLDSALI---QTLIDELELTPNPH---------MASDFNHALHKTPVR 205

Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           ++ +++     L  V+ LK   ++P           +   + +++  +        +
Sbjct: 206 LNVQLSKTVLPLTQVLKLKADDILPIELLNNAPV--NIGKETLFTGRVAEQEGQLVL 260


>gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO
 gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO
 gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin]
 gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 303

 Score = 37.3 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
           GMI1000]
 gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 37.3 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P  ++ K  +    +   +     D+          + V +   +   K  +K+++ L  
Sbjct: 50  PLSSVFKPLMPGEKTTAAAPRNDIDM-------ILDIPVQLTVELGRTKVPIKNLLQLAQ 102

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           G V+           +  NG  I   E+  V + + IR+TD I   ++  K
Sbjct: 103 GSVVELDALAGEPMDVLVNGYLIAQGEVVVVNEKFGIRLTDIITPSERIRK 153


>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
 gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
          Length = 133

 Score = 37.3 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +     T+++++ L  G VI           +  NG  I   E+  V +
Sbjct: 54  ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 113

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 114 KFGIRMTDVISPAERI 129


>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
           BAC17H8]
          Length = 110

 Score = 37.3 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
           +V +   +   +  ++D++ L  G VI           + ANG  I   E+  VG+ + I
Sbjct: 36  DVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGDPLDILANGTMIAKGEVVMVGERFGI 95

Query: 299 RITDRINF 306
           R T+ ++ 
Sbjct: 96  RFTEIVDP 103


>gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 303

 Score = 37.3 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO
 gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 303

 Score = 37.3 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 150

 Score = 37.3 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +D  +     T+++++ L+   +I         A L  NGK + S E+  +  N+  R
Sbjct: 76  VTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDNFGFR 135

Query: 300 ITD 302
           + +
Sbjct: 136 VAE 138


>gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 303

 Score = 37.3 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 303

 Score = 37.3 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
 gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 303

 Score = 37.3 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|167624719|ref|YP_001675013.1| pyridoxal-dependent decarboxylase [Shewanella halifaxensis HAW-EB4]
 gi|167354741|gb|ABZ77354.1| Pyridoxal-dependent decarboxylase [Shewanella halifaxensis HAW-EB4]
          Length = 548

 Score = 37.3 bits (85), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+ +++  +  +   +        E   + +  Y I    +  +  +
Sbjct: 18  TVPEAPESTLSVIEQNISQNLMGFLQESVVAVEKPLSEVELDFQQ-YQIPSAPQFVSDYA 76

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +     +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 77  DNMMQTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 136

Query: 235 TY 236
             
Sbjct: 137 VL 138


>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
 gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
           IMCC1989]
          Length = 150

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
           +  +   I P       + V I   +     T+++++ L  G VI           +  N
Sbjct: 57  DPTAGKAISPELDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVN 116

Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKS 310
           G  I   E+  V + + IR+TD I+  ++ 
Sbjct: 117 GTLIAHGEVVVVNEKFGIRMTDVISPAERI 146


>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
 gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +  R+   +  +KD++ L  G V+           +  N K +   E+  V  
Sbjct: 206 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 265

Query: 295 NYTIRITDRINF 306
            Y +R+TD ++ 
Sbjct: 266 KYGVRLTDIVSP 277


>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
 gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
           HAW-EB4]
          Length = 118

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V++   +   + +L ++  +  G V+           +  NG  +   E+  V   Y
Sbjct: 42  QLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 101

Query: 297 TIRITD 302
            +R+ +
Sbjct: 102 GVRLLE 107


>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
 gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
           BKT015925]
          Length = 417

 Score = 37.3 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V ++  + L KT  ++KDV+ L  G +I      +    +  NGK+I   E+  V +N
Sbjct: 338 LDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDEN 397

Query: 296 YTIRITDRINFDQK 309
           + +RI + ++ +++
Sbjct: 398 FGVRIVNIVSGEER 411


>gi|168016719|ref|XP_001760896.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687905|gb|EDQ74285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1414

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 66   QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS---HETIPQL 122
            +  +    + S  ++         +      +  + +L++  ++  LG      +  P+L
Sbjct: 1034 KIQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYIDVFLGGDEKRPDLPPKL 1093

Query: 123  YNR-SLSTV 130
              R  L+ +
Sbjct: 1094 MQRLPLTII 1102


>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
 gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
          Length = 122

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K   L D++    G VI           +  NG  +   E+  V + Y +R
Sbjct: 49  VTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEKYGLR 108

Query: 300 ITDRINF 306
           + D ++ 
Sbjct: 109 LIDVVDS 115


>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
 gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
           SB155-2]
          Length = 83

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++++   + L  T   + ++++LK G VI      +    +  N K++   E+  +   Y
Sbjct: 16  DISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIVVINDKY 75

Query: 297 TIRITD 302
            +RI D
Sbjct: 76  GVRIVD 81


>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
 gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
           ingrahamii 37]
          Length = 120

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + V++   +  K  TLK+++ +K   V+           +  NGK     E+     +Y
Sbjct: 48  DIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANGHY 107

Query: 297 TIRITDRINFD 307
            ++ITD +N D
Sbjct: 108 GVKITDIVNKD 118


>gi|163751973|ref|ZP_02159184.1| glutamate decarboxylase, putative [Shewanella benthica KT99]
 gi|161328131|gb|EDP99298.1| glutamate decarboxylase, putative [Shewanella benthica KT99]
          Length = 550

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+  + +LS +E+ +++  +  +   +        E   + +  + I    +  +  +
Sbjct: 20  TVPEAPDSTLSVIEQNISQNLMGFLQESVVAIEKPLSEIELDFQQ-HQIPSAPQFVSDYA 78

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 79  DEMMKTLVAHSVHTSSPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 138

Query: 235 TY 236
             
Sbjct: 139 VL 140


>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
 gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
          Length = 116

 Score = 36.9 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   I   +  +KD++ L  G ++      K    L  NG  I   E+     
Sbjct: 37  LMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAG 96

Query: 295 NYTIRITDRINFDQKS 310
            + +R+ D ++  ++ 
Sbjct: 97  QFGLRLIDVVSPSERL 112


>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 112

 Score = 36.9 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  V  
Sbjct: 33  ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVVND 92

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  +
Sbjct: 93  RFGIRLTDVVSPSERIRR 110


>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
 gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
          Length = 111

 Score = 36.9 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
           P +       +   +   +     D     A    ++ V +   +     +L +++ +  
Sbjct: 6   PNDLDALLDDLPADTATAAHAPRRDPRQLLA----KIPVQLTLEVGTATVSLAELMNIDE 61

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           G V+          ++  NG  +   E+   G+NY +++ D
Sbjct: 62  GTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENYGLKVID 102


>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 111

 Score = 36.9 bits (84), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 38/99 (38%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
             +     +     ++  +  P       + V++D  +      +K+++TL+ G ++   
Sbjct: 13  MRVDLPEHEPAETTEARPVAHPRLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLD 72

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            +   C  +  N + +   E+  V   + IRI + +   
Sbjct: 73  RQLDDCVDVRLNERTVARAEIVAVDDRFGIRIVEIVEER 111


>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
 gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
 gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
 gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
 gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
 gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
          Length = 123

 Score = 36.9 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  V   Y +R
Sbjct: 50  VTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVNDKYGLR 109

Query: 300 ITDRINF 306
           + D  + 
Sbjct: 110 LIDVHDS 116


>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
           JCM 2831]
          Length = 110

 Score = 36.9 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 36  EQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARGEVVLV 95

Query: 293 GKNYTIRITDRINFD 307
                + +T+ +  +
Sbjct: 96  EDRLGVTMTEIVKGE 110


>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
 gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
          Length = 101

 Score = 36.9 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 43/97 (44%)

Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
            T+ + +S + SE +  +           + V +  ++   + ++++V+ L  G ++   
Sbjct: 1   MTITTPASDSGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLA 60

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
            R      L  N K +   E+  V +N+ I+IT+ + 
Sbjct: 61  QRATDPVGLFVNDKLVAYGEVVVVEENFGIKITEIVG 97


>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
          Length = 158

 Score = 36.9 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE 137

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 138 KFGIRLTDVISPSERI 153


>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
 gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Paenibacillus curdlanolyticus YK9]
          Length = 411

 Score = 36.9 bits (84), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L++ +   + L +T   +KD++ L  G +I           +  N K I   E+  + +N
Sbjct: 333 LDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 392

Query: 296 YTIRITDRINF 306
           + +R+TD ++ 
Sbjct: 393 FGVRVTDIVSQ 403


>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 379

 Score = 36.9 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 3/111 (2%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLKKT--TLKDVVTL 259
           Q T  K   + +S    S     +    P       L++ +   + L +T  ++K+++ L
Sbjct: 265 QGTPKKAAPVQVSPVEFSAFDPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILEL 324

Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
             G +I           +  N + +   E+  + +N+ +R+TD ++  ++ 
Sbjct: 325 SAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375


>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
 gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
           43969]
          Length = 129

 Score = 36.9 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 49  ILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD 108

Query: 295 NYTIRITDRINFDQKSLK 312
            + IRITD I   ++  +
Sbjct: 109 KFGIRITDIITPSERMYR 126


>gi|160874720|ref|YP_001554036.1| pyridoxal-dependent decarboxylase [Shewanella baltica OS195]
 gi|160860242|gb|ABX48776.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS195]
 gi|315266960|gb|ADT93813.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS678]
          Length = 549

 Score = 36.9 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
 gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
           'morsitans']
          Length = 134

 Score = 36.9 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 3/111 (2%)

Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLKK--TTLKDVVTLKI 261
           +L  T   + S        + +   P        L++ +   + L +   T+++++ L  
Sbjct: 21  SLGDTACPAPSRPEFPPASTTEGGSPLTEDLSLILDIPVKMTVELGRTRMTIRELLHLSQ 80

Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             V+P   +      +  NG  I   E+  +G+ Y +RI D +   ++  +
Sbjct: 81  DAVVPLEGQAGEPLDILINGYLIARGEVVVMGEQYGVRIADIVTPAERMRR 131


>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
 gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
          Length = 150

 Score = 36.9 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +      +++++ L  G V+           +  NG  I   E+  V  
Sbjct: 71  IMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND 130

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IR+TD ++  ++  +
Sbjct: 131 KYGIRLTDVVSPSERIKR 148


>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 121

 Score = 36.9 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ V +   +   + +L +++    G VI           +  NG  +   E+  + + 
Sbjct: 44  KKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINEK 103

Query: 296 YTIRITDRINFDQKSLKN 313
           Y +R+ D ++    ++ N
Sbjct: 104 YGLRLIDVVDSPLNTMDN 121


>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
 gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
           sp. Ex25]
 gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
          Length = 123

 Score = 36.9 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  V   Y +R
Sbjct: 50  VTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLR 109

Query: 300 ITDRINF 306
           + D  + 
Sbjct: 110 LIDVHDS 116


>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
           [uncultured bacterium]
          Length = 117

 Score = 36.9 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
              Y++ V +   +      +  ++ L  G V+           ++AN + I   E+  V
Sbjct: 41  EAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVVV 100

Query: 293 GKNYTIRITDRINFD 307
                I+ITD I  +
Sbjct: 101 EDRLAIQITDIIRSN 115


>gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 317

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           + +   +    TTL  + TL  G V+P          ++A G+ +   EL  V     IR
Sbjct: 253 LQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTLGQGELVEVNGKLAIR 312

Query: 300 I 300
           I
Sbjct: 313 I 313


>gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786]
          Length = 104

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + +++   +   +TTL ++ ++  G V+           + A+G  I   E   +G   
Sbjct: 34  DIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVTIGYGEFVEIGSRV 93

Query: 297 TI 298
            +
Sbjct: 94  AV 95


>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
 gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
           PA1]
 gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
           chloromethanicum CM4]
 gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
 gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
          Length = 115

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 30/76 (39%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 40  EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99

Query: 293 GKNYTIRITDRINFDQ 308
            +   + +T+ I  D 
Sbjct: 100 EERLGVTMTEIIKNDH 115


>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2143]
          Length = 152

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V+I   +   + ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 73  IMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 133 KFGIRMTDVISPSERI 148


>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
 gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
 gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH820]
 gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
 gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 119

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO
 gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III
           secretion and virulence) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III
           secretion and virulence) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 229

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE-LGRVGKN 295
           Q+ V +   +   K T++ +  +  G+VIP     +    + AN   I   + LG     
Sbjct: 157 QVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKLLGMENGA 216

Query: 296 YTIRITD 302
             + +T 
Sbjct: 217 LGVELTQ 223


>gi|157375915|ref|YP_001474515.1| pyridoxal-dependent decarboxylase [Shewanella sediminis HAW-EB3]
 gi|157318289|gb|ABV37387.1| pyridoxal-dependent decarboxylase [Shewanella sediminis HAW-EB3]
          Length = 550

 Score = 36.9 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           TIP+    +LS +E+ +++  +  +   +        E   + ++ + I    K  +  +
Sbjct: 18  TIPEAPGSTLSVIEQNISQNLMGFLQESVVAVEKPLTEIERDFQE-HQIPAAPKFVSDYA 76

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 77  DEMMKTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 136

Query: 235 TY 236
             
Sbjct: 137 VL 138


>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
 gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
          Length = 190

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + +   I      L++++ L    ++           L  NGK I   EL  V  
Sbjct: 107 LMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTVED 166

Query: 295 NYTIRITDRINFDQKS 310
           ++ I+IT  I   ++ 
Sbjct: 167 HFGIKITSIITVQERM 182


>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 408

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V ++  + L +T   +++++    G +I           +  NGK I S E+  + +N
Sbjct: 334 LDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDEN 393

Query: 296 YTIRITDRINFDQKS 310
           + +RI   I  + + 
Sbjct: 394 FGVRIKSIIKPENRI 408


>gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
 gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
           43970]
          Length = 129

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 49  ILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD 108

Query: 295 NYTIRITDRINFDQKSLK 312
            + IRITD I   ++  +
Sbjct: 109 KFGIRITDIITPSERMYR 126


>gi|304409686|ref|ZP_07391306.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS183]
 gi|307304042|ref|ZP_07583795.1| Pyridoxal-dependent decarboxylase [Shewanella baltica BA175]
 gi|304352204|gb|EFM16602.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS183]
 gi|306912940|gb|EFN43363.1| Pyridoxal-dependent decarboxylase [Shewanella baltica BA175]
          Length = 549

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
 gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
 gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
          Length = 123

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  V   Y +R
Sbjct: 50  VTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLR 109

Query: 300 ITDRINF 306
           + D  + 
Sbjct: 110 LIDVHDS 116


>gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.9 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
 gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
 gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 119

 Score = 36.9 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
 gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
          Length = 117

 Score = 36.9 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   I   K  +KD++ L  G ++      K    L  NG  I   E+     
Sbjct: 38  LMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAG 97

Query: 295 NYTIRITDRINFDQKS 310
            + +R+ D ++  ++ 
Sbjct: 98  QFGLRLIDVVSPSERL 113


>gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
           BNC1]
 gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
           BNC1]
          Length = 354

 Score = 36.9 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 30/73 (41%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           P A     L V +D   + ++ TL+++  L  G  +           + ANG       L
Sbjct: 272 PLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVTILANGAPAGRGYL 331

Query: 290 GRVGKNYTIRITD 302
            ++G +  ++++ 
Sbjct: 332 VQIGDHMGVQLSH 344


>gi|157147123|ref|YP_001454442.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895]
 gi|157084328|gb|ABV14006.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895]
          Length = 294

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 72/202 (35%), Gaps = 19/202 (9%)

Query: 93  SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL--STVEKKLAKRTIAQISAVLNQCI 150
            N        L++ +L +  G S ++     + SL  +  E++L  +   +++  L  C 
Sbjct: 85  GNVAFVIDRILLLNILHDYYGLSKDSSHVAPDESLRVTKTEERLRSKLGQELTQ-LVICK 143

Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ETLL 207
            T  E+            +K + + + + +   I   +       SF +++     + +L
Sbjct: 144 ETFGENL----------DIKVDYSTVISHWSWCITFTLE-GYDHGSFTILLDHHHVDQML 192

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                  ++ +++            R    L + +  R+     T+  +  +K G +IP 
Sbjct: 193 AILRSPDAADSRAVKSVPLNPAQIERLFDSLPLKLSGRLASLNLTVAQISDIKPGDIIPI 252

Query: 268 LHREKTCAILSANGKEIYSCEL 289
              E     +    ++I+   +
Sbjct: 253 AINE--PLPVFIGKEQIFEAAI 272


>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
           12472]
 gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 116

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             ++ V +   +     +L D+  +  G V+           +  NG  I   E+   G 
Sbjct: 39  LRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGD 98

Query: 295 NYTIRITDRINFDQKSL 311
           NY +R+ +  +    SL
Sbjct: 99  NYGLRVVELNDLQLDSL 115


>gi|126173808|ref|YP_001049957.1| pyridoxal-dependent decarboxylase [Shewanella baltica OS155]
 gi|125997013|gb|ABN61088.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS155]
          Length = 549

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
 gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           ambifaria MC40-6]
          Length = 381

 Score = 36.9 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    +   S    +   D   R    L V++   +      L ++ TL+ G VI
Sbjct: 275 IREMPLEPTRTDTPSVTTHDASADDAPRSLDSLAVDLRFELPPTSIPLGELGTLQPGAVI 334

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I + +L  VG+   +R+
Sbjct: 335 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 370


>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 120

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  V   Y +R
Sbjct: 47  VTVTLEVASKEVALGDLMKAGEGSVIELDKMNGEPLDVKVNGSLMGHAEVVVVNDKYGLR 106

Query: 300 ITDRINF 306
           + D ++ 
Sbjct: 107 LIDVVDE 113


>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
 gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
          Length = 172

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 92  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  +
Sbjct: 152 KFGIRLTDVISPGERIKR 169


>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
 gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
 gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
 gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
           CGA009]
 gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris TIE-1]
 gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris DX-1]
          Length = 80

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 24/73 (32%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +++V++   +      +  V+ L  G +I     E     + AN   I S  +       
Sbjct: 6   KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRNRI 65

Query: 297 TIRITDRINFDQK 309
            + +   +     
Sbjct: 66  AVEVKQMLPRSPD 78


>gi|217973934|ref|YP_002358685.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS223]
 gi|217499069|gb|ACK47262.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS223]
          Length = 549

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
 gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
           QYMF]
          Length = 393

 Score = 36.9 bits (84), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLK 260
           Q +L  + +     Q +S +Q  +   P      Q +V +   + L +T   + +V+   
Sbjct: 282 QPSLENSKINVQPVQFQSFDQQSNRGLPENIALIQ-DVPLSVTVELGRTVKKISEVLEFG 340

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
            G +I           +  NG+ +   E+  + +NY IRITD +   ++ 
Sbjct: 341 PGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRL 390


>gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 329

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRV 292
           +    +V +   + + + TL ++  L+ GQ++            +   G  +    L  +
Sbjct: 253 ELEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVARGSLVEI 312

Query: 293 GKNYTIRIT 301
                +RI 
Sbjct: 313 NGLLGVRID 321


>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
 gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
          Length = 80

 Score = 36.9 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/70 (12%), Positives = 23/70 (32%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ V++   +      +  V+ L  G +I     E     + AN   + S  +       
Sbjct: 6   KVTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLVDRNRI 65

Query: 297 TIRITDRINF 306
            + +   +  
Sbjct: 66  AVEVKQMLPR 75


>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
          Length = 392

 Score = 36.6 bits (83), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T+  +K+++    G +I           +  NGK +   E+  + ++
Sbjct: 323 MDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEVVVIEES 382

Query: 296 YTIRITDRI 304
           Y IRIT+ I
Sbjct: 383 YGIRITEII 391


>gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis]
          Length = 303

 Score = 36.6 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 400

 Score = 36.6 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T  T+K+++ L  G ++           +  NGK I   E+  + +N
Sbjct: 322 MDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVVVIDEN 381

Query: 296 YTIRITDRINF 306
           Y +R+T  I+ 
Sbjct: 382 YGVRVTAIISP 392


>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
 gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
          Length = 119

 Score = 36.6 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
           +SL        +  +           +++ +  ++     TL DV  LK+G V+      
Sbjct: 8   VSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNL 67

Query: 272 KTCAIL 277
                +
Sbjct: 68  GHKVDV 73


>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 397

 Score = 36.6 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V +   + L +T  ++K+++ L  G ++           +  NGK +   E+  + +N
Sbjct: 319 LDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVVVIDEN 378

Query: 296 YTIRITDRINF 306
           + +RIT+ ++ 
Sbjct: 379 FGVRITEIVSP 389


>gi|194477137|ref|YP_002049316.1| Menaquinone biosynthesis protein [Paulinella chromatophora]
 gi|171192144|gb|ACB43106.1| Menaquinone biosynthesis protein [Paulinella chromatophora]
          Length = 635

 Score = 36.6 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 36  SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
            S        + + F+    +D  +S     S  + +++    +  +      + W    
Sbjct: 456 ESFTKNLYPHIVESFRGSSGIDGTLSLAMGLSSVYGNLLLVSGDLALLHD--SNGWLWQQ 513

Query: 96  FIG-CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
            I   +N+L + L++N  G           RS S  E  ++     +I 
Sbjct: 514 QISRLNNHLTVLLIDN--GGGGIFEQLPI-RSYSDTEGSISSINFERIF 559


>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
           L1-82]
 gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
          Length = 392

 Score = 36.6 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +T+  +K+++    G +I           +  NGK +   E+  + ++
Sbjct: 323 MDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEVVVIEES 382

Query: 296 YTIRITDRI 304
           Y IRIT+ I
Sbjct: 383 YGIRITEII 391


>gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.6 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.6 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
 gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
           DM98]
 gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
 gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei]
 gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
           [Burkholderia pseudomallei 668]
 gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
 gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
           pseudomallei 1655]
          Length = 115

 Score = 36.6 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ V +   +     +L +++ +  G V+          ++  NG  +   E+   G+NY
Sbjct: 41  KIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENY 100

Query: 297 TIRITD 302
            ++I D
Sbjct: 101 GLKIID 106


>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 192

 Score = 36.6 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              L + I   I  K  T++++V L    V+           L  NG  +   EL +V  
Sbjct: 107 LLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNGVLVAKGELYQVED 166

Query: 295 NYTIRITDRINFDQK 309
            + I+I + +  +++
Sbjct: 167 QFAIKIKEILTKEER 181


>gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.6 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  ++ K  TL D+  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
           35937]
          Length = 112

 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 33  ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  +
Sbjct: 93  RFGIRLTDVVSPSERIRR 110


>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
 gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
          Length = 106

 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 35/78 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V++   I   K T+++++ L  G ++P          +  NG  +   E+  V  
Sbjct: 27  ILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLDVLVNGTLVAHGEVVVVND 86

Query: 295 NYTIRITDRINFDQKSLK 312
            + +R+TD ++  ++  +
Sbjct: 87  KFGVRLTDIVSKAERIKR 104


>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
           limnophilus DSM 3776]
          Length = 396

 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 37/102 (36%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
                +     ++  Q         ++   + V +  R+  K+  L  ++ L  G ++ F
Sbjct: 288 DPMESAAPLAQETMPQQSVTSQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTF 347

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
               +    +    ++    E  ++G+++ +++       +K
Sbjct: 348 SKPCEDLLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPEK 389


>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
 gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
          Length = 153

 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 31/78 (39%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 71  ILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 130

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 131 KFGIRLTDIVTPSERMRR 148


>gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  ++ K  TL D+  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|114048080|ref|YP_738630.1| pyridoxal-dependent decarboxylase [Shewanella sp. MR-7]
 gi|113889522|gb|ABI43573.1| Pyridoxal-dependent decarboxylase [Shewanella sp. MR-7]
          Length = 549

 Score = 36.6 bits (83), Expect = 5.0,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPSQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 112

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 33  ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  +
Sbjct: 93  RFGIRLTDVVSPSERIRR 110


>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
 gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
 gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. salamae serovar Sofia]
          Length = 303

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica]
 gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 36.6 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 112

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 33  ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  +
Sbjct: 93  RFGIRLTDVVSPSERIRR 110


>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
 gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
 gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
                +++ +  ++     TL DV  LK+G V+           +  +  ++   E   +
Sbjct: 29  DTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDIKVGIGEATVM 88

Query: 293 GKNYTIRITDRINFDQK 309
            + + I I++ I  D+K
Sbjct: 89  DEKFGIIISE-IEADKK 104


>gi|113970855|ref|YP_734648.1| pyridoxal-dependent decarboxylase [Shewanella sp. MR-4]
 gi|113885539|gb|ABI39591.1| Pyridoxal-dependent decarboxylase [Shewanella sp. MR-4]
          Length = 549

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPSQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
 gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
          Length = 122

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  +   Y +R
Sbjct: 49  VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108

Query: 300 ITDRINF 306
           + +  + 
Sbjct: 109 LINVHDS 115


>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
 gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
           maltophilia K279a]
 gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
          Length = 111

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
           L+ T    SS    E    DL          + V +   +   +  +++++ L  G V+ 
Sbjct: 7   LEPTPAQFSSLQADEANGPDLNLDV---ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVE 63

Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                     +  NG  I   E+  +   + +R+TD ++  ++  +
Sbjct: 64  LERGAGESLDVFVNGTLIAHGEVVVINDRFGVRLTDVVSPSERIRR 109


>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
 gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
           2060]
          Length = 116

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 38/107 (35%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           +PQ +     L    + +  +            + + + V +   +   +  + D++ L 
Sbjct: 9   LPQLSEADLALDQNGADSLRDGPPSPKSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLG 68

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
            G V+    +      +  N + +   E+  V +   + +T+ +  D
Sbjct: 69  PGTVLELDRKVGEAIDIYVNNRLVARGEVVLVEERLGVTMTEIVKSD 115


>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
           harveyi ATCC BAA-1116]
 gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
          Length = 122

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +  K+  L D++    G VI           +  NG  +   E+  +   Y +R
Sbjct: 49  VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108

Query: 300 ITDRINF 306
           + +  + 
Sbjct: 109 LINVHDS 115


>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
 gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
          Length = 165

 Score = 36.6 bits (83), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG+ I   E+  V +
Sbjct: 86  ILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE 145

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  +
Sbjct: 146 KFGIRLTDVVSQQERVQR 163


>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
 gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
 gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
           EF01-2]
          Length = 163

 Score = 36.6 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V 
Sbjct: 81  RVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVN 140

Query: 294 KNYTIRITDRINFDQKSLK 312
             + IR+TD +   ++  +
Sbjct: 141 DKFGIRLTDVVTPSERLRR 159


>gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 409

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
               L V +   +  +  T+ D+  L  G              L+  G+ + +  L  +G
Sbjct: 331 DVNALGVTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLG 390

Query: 294 KNYTIRI 300
               +++
Sbjct: 391 GTLGVQV 397


>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
 gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
          Length = 116

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 30/75 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            + + + V +   +   +  + D++ L  G V+    +      +  N + +   E+  V
Sbjct: 41  EQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVARGEVVLV 100

Query: 293 GKNYTIRITDRINFD 307
            +   + +T+ +  D
Sbjct: 101 EERLGVTMTEIVKSD 115


>gi|254255041|ref|ZP_04948358.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
 gi|124899686|gb|EAY71529.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
          Length = 292

 Score = 36.6 bits (83), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ V ++  I  ++  L DV+ L  G ++P    +     +  +G +++   +   G   
Sbjct: 226 RIPVALNATIVTRELLLGDVLDLNRGSILPIRLPDAADVDV--DGLKVFRAAVVEHGGKI 283

Query: 297 TI 298
            +
Sbjct: 284 CL 285


>gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 223

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 149 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTL 208

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 209 GVEIHEWLSES 219


>gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147]
          Length = 104

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            + +++   +   +TTL ++ ++  G V+           + A+G  I   E   +G   
Sbjct: 34  DIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVMIGYGEFVEIGSRV 93

Query: 297 TI 298
            +
Sbjct: 94  AV 95


>gi|24373336|ref|NP_717379.1| glutamate decarboxylase, putative [Shewanella oneidensis MR-1]
 gi|24347590|gb|AAN54823.1|AE015621_1 glutamate decarboxylase, putative [Shewanella oneidensis MR-1]
          Length = 533

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+  + +LS +E+KL++     +   +        E   +    ++I    +  +  +
Sbjct: 5   TVPEDADSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDF-QTFEIPNQPRFVSDYT 63

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 64  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 123

Query: 235 TY 236
             
Sbjct: 124 VL 125


>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
 gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
           G9241]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
 gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|117921127|ref|YP_870319.1| pyridoxal-dependent decarboxylase [Shewanella sp. ANA-3]
 gi|117613459|gb|ABK48913.1| Pyridoxal-dependent decarboxylase [Shewanella sp. ANA-3]
          Length = 549

 Score = 36.6 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  ++I    +  +  +
Sbjct: 21  TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPSQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|172051242|gb|ACB70396.1| 60S ribosomal protein L2/L8 [Ornithodoros coriaceus]
          Length = 235

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
             L++G V+P     +   I +   K      L R   NY   I    +  +  +K
Sbjct: 71  AQLQVGNVLPLSAMPEGTVICNVEEKPGDRGSLARTSGNYATVIAHNPDPRKTRVK 126


>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
           hydrocarbonoclasticus]
          Length = 166

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 86  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  +
Sbjct: 146 KFGIRLTDVISPGERIKR 163


>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
 gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0465]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|5061|emb|CAA28710.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 239

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTY--QLNVNIDTRINLKKTTL------KDVVTLKIGQV 264
            +SS+      +  L  P           + +   + L+  TL           L +G V
Sbjct: 41  VVSSKRSFMTLAVVLRWPRLLSVILITTELMLKPLLQLRVCTLANSFYCGKNAALTVGNV 100

Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           +P     +   I +   K      LGR   NY I +   ++  +  +K
Sbjct: 101 LPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVK 148


>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
 gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
          Length = 166

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 86  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  +
Sbjct: 146 KFGIRLTDVISPGERIKR 163


>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
 gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
 gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
           [Bacillus anthracis str. A2012]
 gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
 gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
 gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
 gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
 gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
           94]
 gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. Ames]
 gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
           str. Sterne]
 gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0488]
 gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0193]
 gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0442]
 gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0389]
 gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0174]
 gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. CDC 684]
 gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
           str. A0248]
          Length = 119

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
           HP15]
          Length = 163

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 83  ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 142

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I+  ++  +
Sbjct: 143 KFGIRLTDVISPGERIKR 160


>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
           ferrodiazotrophum]
          Length = 125

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + + I  R+   +  +KD++ L  G V+           +  N + +   ++  V  
Sbjct: 47  LLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND 106

Query: 295 NYTIRITDRINF 306
            Y IR+TD ++ 
Sbjct: 107 KYGIRLTDIVSP 118


>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
 gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
 gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
          Length = 113

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia AU 1054]
 gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia HI2424]
 gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
 gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia AU 1054]
 gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia HI2424]
 gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
          Length = 384

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    + +      +       R    L V++   +      L ++  L+ G VI
Sbjct: 278 IREMPLEPTRTDSAPPTTHDAPPADVPRSLDGLAVDLRFELPPTSMPLGELSALQPGAVI 337

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I +  L  VG+   +R+
Sbjct: 338 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 373


>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
 gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
           2876]
          Length = 426

 Score = 36.2 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +TT  +K+++    G ++           +  NGK +   E+  + ++
Sbjct: 357 MDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVIEES 416

Query: 296 YTIRITDRI 304
           + ++IT+ +
Sbjct: 417 FGVKITEIV 425


>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
 gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
          Length = 112

 Score = 36.2 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
           IP + L      S         Q    ++      + + V I   +   K  + D++ L 
Sbjct: 9   IPLDELEVPAAPSEEDGATGATQGAGDLEA----VFDVPVRISAVLGSSKMHVSDLLKLA 64

Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
            G V+    +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 65  SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112


>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
 gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
           16841]
          Length = 379

 Score = 36.2 bits (82), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           ++V ++  + L +TT  + +++    G +I           +  NGK +   E+  + ++
Sbjct: 310 MDVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEES 369

Query: 296 YTIRITDRI 304
           + +RIT+ +
Sbjct: 370 FGVRITEIV 378


>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
 gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisA53]
          Length = 82

 Score = 36.2 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 24/73 (32%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +++V++   +      +  V+ L  G +I     E     + AN   + S  +       
Sbjct: 8   KVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLVDRNRI 67

Query: 297 TIRITDRINFDQK 309
            + +   +     
Sbjct: 68  AVEVKRMLPRSPD 80


>gi|294636651|ref|ZP_06715003.1| amine oxidase, flavin-containing [Edwardsiella tarda ATCC 23685]
 gi|291090115|gb|EFE22676.1| amine oxidase, flavin-containing [Edwardsiella tarda ATCC 23685]
          Length = 454

 Score = 36.2 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
             R LS  E+++ +R  + +   L +  S  Q+ S  L    DI      + RL+  ++ 
Sbjct: 123 DGRPLSAKEERVLERLKSVLFETLQEGQSAPQDKS-ILATVADIVQDASPSERLNIWYLL 181

Query: 183 TINMNMTIENVASSFV 198
             N+   +        
Sbjct: 182 NSNLEQELSGALGEMS 197


>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 78

 Score = 36.2 bits (82), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V +   +      +  ++ +  G VI    R+     + AN   I   E+   G+   + 
Sbjct: 9   VELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGERVAVS 68

Query: 300 IT 301
           IT
Sbjct: 69  IT 70


>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
 gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB18]
          Length = 80

 Score = 36.2 bits (82), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 24/73 (32%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +++V++   +      +  V+ L  G +I     E     + AN   I S  +       
Sbjct: 6   KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRNRI 65

Query: 297 TIRITDRINFDQK 309
            + +   +     
Sbjct: 66  AVEVKRMLPRSPD 78


>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 83

 Score = 36.2 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 24/72 (33%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   ++V +   +      +  ++ +  G VIP    E     + AN   +    +    
Sbjct: 3   QIEAVDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEIRE 62

Query: 294 KNYTIRITDRIN 305
               I +T   +
Sbjct: 63  DRIAITVTRPAD 74


>gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 338

 Score = 36.2 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 198 VLIIPQETLLK-----TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
            L +P   LL          +   ++ ++ QSE L    +R+   L ++++ R      T
Sbjct: 219 ELQLPHHFLLNHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMT 278

Query: 253 LKDVVTLKIGQVIPFL 268
           L ++  L+ G V+   
Sbjct: 279 LGELQQLQAGSVVTLD 294


>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
 gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
           MMB-1]
          Length = 150

 Score = 36.2 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VN+   +      +++++ L  G V+           +  NG  I   E+  V  
Sbjct: 71  IMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND 130

Query: 295 NYTIRITDRINFDQKSLK 312
            Y IR+TD ++  ++  +
Sbjct: 131 KYGIRLTDVVSPSERIKR 148


>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
 gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
           19865]
          Length = 112

 Score = 36.2 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 33  ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD ++  ++  +
Sbjct: 93  RFGIRLTDVVSPSERIRR 110


>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
 gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
           c2]
          Length = 139

 Score = 36.2 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
           +    Q +S  +S    +P   +    + V +   I      ++ ++ L  G ++     
Sbjct: 36  VPPLDQFESAGKSNGTENPINLEVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRL 95

Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                 +  NG  I   E+  + + + IR+TD I+  ++  K
Sbjct: 96  AGEPLDVLVNGTLIARGEVVVINEKFGIRLTDVISPAERLRK 137


>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
 gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
 gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
           KBAB4]
 gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
 gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
          Length = 119

 Score = 36.2 bits (82), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                    +  +  ++   E   + + + I I++ I  D+K
Sbjct: 64  EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISE-IEADKK 104


>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
 gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
 gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
 gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
          Length = 113

 Score = 36.2 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
 gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
 gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
          Length = 113

 Score = 36.2 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
 gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
           R551-3]
          Length = 111

 Score = 36.2 bits (82), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +++++ L  G V+           +  NG  I   E+  +  
Sbjct: 32  ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91

Query: 295 NYTIRITDRINFDQKSLK 312
            + +R+TD ++  ++  +
Sbjct: 92  RFGVRLTDVVSPSERIRR 109


>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
 gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
           MED105]
          Length = 149

 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G VI           +  NG  I   E+  V  
Sbjct: 69  ILDIPVQLTVELGRTKIPIKHILQLAQGSVIELDGLAGEPMDVLVNGYLIAQGEVVVVND 128

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 129 KFGIRLTDIITPSERLRK 146


>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
 gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
 gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
          Length = 113

 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia]
 gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 366

 Score = 36.2 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    + +      +       R    L V++   +      L ++  L+ G VI
Sbjct: 260 IREMPLEPTRTDSAPPTTHDAPPGDAPRSLDGLAVDLRFELPPTSMPLGELSALQPGAVI 319

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I +  L  VG+   +R+
Sbjct: 320 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 355


>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 109

 Score = 36.2 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
             + + VNI   +     T+  ++ L  G V+    +      +  N + +   E+  V 
Sbjct: 32  TVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVARGEVVVVE 91

Query: 294 KNYTIRITDRINFDQ 308
               + +T+ I  + 
Sbjct: 92  DRLGVTMTEIIKTED 106


>gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
           HTCC2503]
 gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
           HTCC2503]
          Length = 90

 Score = 36.2 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
           S++       P     Y + + +   +   K +LK++       V+P L R      L  
Sbjct: 2   SDSAKAQNKQPL----YDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVV 57

Query: 280 NGKEIYSCEL--GRVG-KNYTIRITDRINFDQK 309
           +G+ I + EL  G  G ++  +RI D    + +
Sbjct: 58  DGQVIATGELCEGDTGPESLALRILDLKEENAE 90


>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
           SL003B-26A1]
 gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
           SL003B-26A1]
          Length = 112

 Score = 36.2 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 4/113 (3%)

Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
                IP + L      S   +     QS   ++      + + V I   +   +  + D
Sbjct: 4   EIENSIPLDELESPGRRSDDGEEGVHVQSAADLEA----VFDVPVRISAVLGHSRMHVSD 59

Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           ++ L  G V+    +      +  N + +   E+  V     + +T+ I  D+
Sbjct: 60  LLKLAAGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112


>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 178

 Score = 36.2 bits (82), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +N+ +   +      +KDV  L  G V+           + ANG+ +   +L  +  
Sbjct: 103 LMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMDD 162

Query: 295 NYTIRITDRINFDQKS 310
            Y I+IT+ ++  ++ 
Sbjct: 163 FYGIQITEIVDQSRRL 178


>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
 gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
          Length = 130

 Score = 36.2 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   + V +   I   + T+ + + L+ G ++           L  NG  I   E+  + 
Sbjct: 28  RLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVID 87

Query: 294 KNYTIRITDRINFD 307
           + + +RITD +   
Sbjct: 88  EEFGLRITDVLGAP 101


>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
 gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
           ATCC 49814]
          Length = 80

 Score = 36.2 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%)

Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
           + + I   +   K  ++ ++ +  G VIP    E     + AN   I   EL   G+  +
Sbjct: 4   VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGERVS 63

Query: 298 IRITDRINFDQ 308
           + +T     + 
Sbjct: 64  VSVTGAAQVED 74


>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
 gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
 gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
 gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
 gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
 gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
 gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
 gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
 gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
 gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
 gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
 gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
 gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
 gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
 gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
          Length = 113

 Score = 36.2 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 33/75 (44%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +++ +   +   +  +KD++ +  G +I           +  NGK +   E+  + +
Sbjct: 39  LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98

Query: 295 NYTIRITDRINFDQK 309
           N+ +RIT+ I    +
Sbjct: 99  NFGVRITEIIKTKNE 113


>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
 gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
          Length = 111

 Score = 36.2 bits (82), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 31/94 (32%)

Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
           +  +             P       +++ +   +     TL +++ L  G VI       
Sbjct: 7   APKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAAT 66

Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
               + ANG  I   E+  V   Y I++ + +  
Sbjct: 67  DLLDIYANGTLIAKGEIVSVDGRYGIQVAEVVAP 100


>gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
 gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
           xanthus DK 1622]
          Length = 416

 Score = 36.2 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 23/61 (37%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V+++  +      L ++  LK G ++P         +L    + +   EL  +      R
Sbjct: 351 VDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVGAR 410

Query: 300 I 300
           +
Sbjct: 411 V 411


>gi|320107031|ref|YP_004182621.1| surface presentation of antigens (SpoA) protein [Terriglobus
           saanensis SP1PR4]
 gi|319925552|gb|ADV82627.1| surface presentation of antigens (SpoA) protein [Terriglobus
           saanensis SP1PR4]
          Length = 79

 Score = 36.2 bits (82), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%)

Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
           P       L V +   + L +  ++D++ L+ G V+     E     L     ++  CE 
Sbjct: 5   PSWPVLSTLQVRMKVALPLPRFCVRDLLALQPGSVVGSGWNETEDVPLIGGETQVSWCEF 64

Query: 290 GRVGKNYTIRITDRI 304
             V     +R+T  I
Sbjct: 65  ETVEDRIAVRLTRLI 79


>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
 gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
           palustris BisB5]
          Length = 80

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 24/73 (32%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +++V++   +      +  V+ L  G +I     E     + AN   I S  +       
Sbjct: 6   KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLVDRNRI 65

Query: 297 TIRITDRINFDQK 309
            + +   +     
Sbjct: 66  AVEVKQMLTRSPD 78


>gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium
           sp. TrichSKD4]
 gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium
           sp. TrichSKD4]
          Length = 348

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%)

Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
           E++ +  A K  ++ VN+       +  + ++  L+ G V+     +     L  NG++I
Sbjct: 265 ENMGEGAAGKVDEIKVNLVVSAGELQLPIGELRELETGSVLRLPVGQPGNVNLMVNGQKI 324

Query: 285 YSCELGRVGKNYTIRITD 302
               L  +     + I+ 
Sbjct: 325 GEGVLVTISGQTAVEISK 342


>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
 gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
          Length = 120

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
               ++ V +   +      + +++ L  G ++P  HR      +  NG+ I   E+
Sbjct: 38  ESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEV 94


>gi|91793786|ref|YP_563437.1| pyridoxal-dependent decarboxylase [Shewanella denitrificans OS217]
 gi|91715788|gb|ABE55714.1| Pyridoxal-dependent decarboxylase [Shewanella denitrificans OS217]
          Length = 554

 Score = 36.2 bits (82), Expect = 7.1,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  + I    +  +  +
Sbjct: 26  TVPEDAESTLSIIEQKLSEDLAGFLGNSIAALEKPLSEIETDFQA-FQIPTAPRFVSDYT 84

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++    +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 85  DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 144

Query: 235 TY 236
             
Sbjct: 145 VL 146


>gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria IOP40-10]
 gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria IOP40-10]
          Length = 193

 Score = 36.2 bits (82), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    +   S    +   D   R    L V++   +      L ++  L+ G VI
Sbjct: 87  IREMPLEPTRTDTPSATTHDASADDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVI 146

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I + +L  VG+   +R+
Sbjct: 147 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 182


>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
 gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
          Length = 119

 Score = 36.2 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
 gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
 gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
 gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH1134]
 gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
           B4264]
 gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
           G9842]
 gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
 gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
 gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
 gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
 gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
 gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
 gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
 gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
 gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
 gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
           200]
 gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
 gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 119

 Score = 36.2 bits (82), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 24/70 (34%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL        +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|332799974|ref|YP_004461473.1| heavy metal translocating P-type ATPase [Tepidanaerobacter sp. Re1]
 gi|332697709|gb|AEE92166.1| heavy metal translocating P-type ATPase [Tepidanaerobacter sp. Re1]
          Length = 868

 Score = 36.2 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
           ++ ++  +  +    +       LS +E  ++    AQ   VL    +  +  +   +  
Sbjct: 104 ILFMIPLMYISMGHMLNLPLPSFLSGIENAVS-FAFAQFLLVLPIAFANRKFYTIGFKTL 162

Query: 164 Y----DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ--------ETLLKTTL 211
           +    ++D L    +  +  +       M+    A  F L+             ++ T +
Sbjct: 163 FKGHPNMDSLIAIGSGSALIYGVFAIFRMSYGLGAGDFELVHRYYHDLYFESAAMILTLI 222

Query: 212 ISLS-----SQNKSENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
                    ++ K+ +  + L+D  P A +  +    ++  I ++   ++D++ ++ G  
Sbjct: 223 TVGKFLETRAKGKTTDAIKKLMDLAPKAARVERD--GLEEEIPVESVKVEDIIVIRPGDS 280

Query: 265 IPFL 268
           IP  
Sbjct: 281 IPVD 284


>gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
 gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia
           ambifaria MEX-5]
          Length = 193

 Score = 36.2 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    +   S    +   D   R    L V++   +      L ++  L+ G VI
Sbjct: 87  IREMPLEPTRTDTPSATTHDASADDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVI 146

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I + +L  VG+   +R+
Sbjct: 147 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 182


>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
 gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
          Length = 107

 Score = 36.2 bits (82), Expect = 7.4,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
            ++ +   + +  T+L+  +++ L  G V+    +      +  NG  +   E+  V   
Sbjct: 26  ADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEVVTVNGK 85

Query: 296 YTIRITDRINFD 307
           + IR+ D +  D
Sbjct: 86  FGIRVVDIVAAD 97


>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
 gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
          Length = 514

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 81/259 (31%), Gaps = 36/259 (13%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGIVQ---EDAELTELEVSAVQ 317

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N +       +   + ++ 
Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVDG 376

Query: 193 V-------------ASSFVLII-------------PQETLLKTTLISLSSQNKSENQSED 226
           +             A     ++             P   +++    +         + ++
Sbjct: 377 LLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEKATPPAEIIEPEKPA-EPVQPIVVEEKE 435

Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
            +    +    + V ++      K  L+  ++     VI          +L+ NG  I  
Sbjct: 436 TLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGK 495

Query: 287 CELGRVGKNYTIRITDRIN 305
             L RV  ++ I++T+ + 
Sbjct: 496 GILVRVDDHFGIQMTELVR 514


>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 178

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              +N+ +   +      +KDV  L  G V+           + ANG+ +   +L  +  
Sbjct: 103 LMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMDD 162

Query: 295 NYTIRITDRINFDQKS 310
            Y I+IT+ ++  ++ 
Sbjct: 163 FYGIQITEIVDQSRRL 178


>gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 303

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           QL V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++    
Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLVGNGELVQMNDTL 288

Query: 297 TIRITDRINFD 307
            + I + ++  
Sbjct: 289 GVEIHEWLSES 299


>gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 85

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
            +  ++   + TL  +  +  G V+PF  +      L  NG+ I   EL  +G    +R
Sbjct: 20  TLICQLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDGLGVR 78


>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
 gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
          Length = 174

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%)

Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
           L   + +  ++    D        + V +   I   + +++ ++ L  G V+        
Sbjct: 74  LDEFDPAATRAGGEDDQNIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGE 133

Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
              +  NG  I   E+  V + + IR+TD I+  ++
Sbjct: 134 PLDVMVNGTLIAHGEVVVVNERFGIRLTDVISPAER 169


>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 226

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 211 LISLSSQNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
              L           +L D  A       + V +   I   + +++ ++ L  G V+   
Sbjct: 121 RAELDELEPDAGAGRNLGDEEANLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELD 180

Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                   +  NG  I   E+  V + + IR+TD I+  ++
Sbjct: 181 RLAGEPLDVMVNGTLIAHGEVVVVNERFGIRLTDVISAAER 221


>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
          Length = 151

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 72  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 131

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 132 KFGIRLTDVISPSERI 147


>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
 gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
           4b H7858]
 gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
 gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
           N1-017]
          Length = 504

 Score = 36.2 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 37/260 (14%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 250 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 306

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDY------------------------ 168
             + Q+    +  +++ + T  + SP   +F +                           
Sbjct: 307 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGL 366

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFV---LIIPQETLLKTTLISLSSQNKSENQSE 225
           LK    ++ N         + +   A          P E +    L      +++  + +
Sbjct: 367 LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKLAEP--VHQAVIEEK 424

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
           + +    +    + V ++      K  L+  ++     VI          +L+ NG  I 
Sbjct: 425 ETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIG 484

Query: 286 SCELGRVGKNYTIRITDRIN 305
              L RV  ++ I++T+ + 
Sbjct: 485 KGILVRVDDHFGIQMTELVR 504


>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
 gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
 gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
          Length = 504

 Score = 35.8 bits (81), Expect = 7.7,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 250 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 306

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N +       +   + +E 
Sbjct: 307 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVEG 365

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234
           +     L  P   +         +Q     Q++++ +  A                    
Sbjct: 366 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAV 420

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                           + V ++      K  L+  ++     VI          +L+ NG
Sbjct: 421 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 480

Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305
             I    L RV  ++ I++T+ + 
Sbjct: 481 VTIGKGILVRVDDHFGIQMTELVR 504


>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 134

 Score = 35.8 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 238 LNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
           L+V ++  + L      +  ++ L  G VI           +  N K +   E+  V + 
Sbjct: 56  LDVPLEVSVELGRTSMIINKMLQLTQGSVIELDKAAGEPVEIFVNQKLMGKGEVVVVNER 115

Query: 296 YTIRITDRINFDQKS 310
           + IR+T+ I+   + 
Sbjct: 116 FGIRVTEIISQADRI 130


>gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           multivorans ATCC 17616]
 gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           multivorans ATCC 17616]
          Length = 443

 Score = 35.8 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTI 298
           V++   +      L ++  L+ G VI          I L ANG  I +  L  VG+   +
Sbjct: 371 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 430

Query: 299 RI 300
           R+
Sbjct: 431 RV 432


>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
 gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
 gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
 gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
 gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
           10987]
 gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
           NVH0597-99]
 gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
           H3081.97]
 gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
           AH187]
 gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
 gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
 gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
          Length = 119

 Score = 35.8 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
 gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
           1]
          Length = 141

 Score = 35.8 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%)

Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
            +   + + +   +   +  + DVV+L  G ++ F         ++ NGK I   E+  V
Sbjct: 60  ERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVV 119

Query: 293 GKNYTIRITDRINFDQKSLKNF 314
           G+++ +RI+  I   Q+     
Sbjct: 120 GEHFGVRISQIITPQQRIENML 141


>gi|294141792|ref|YP_003557770.1| glutamate decarboxylase [Shewanella violacea DSS12]
 gi|293328261|dbj|BAJ02992.1| glutamate decarboxylase, putative [Shewanella violacea DSS12]
          Length = 550

 Score = 35.8 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+  + +LS +EK +++  +  +   +        E   + +  + I    +  +  +
Sbjct: 20  TVPEAPDSTLSVIEKNISQNLMGFLQESVVAVEKPLSEIELDFQQ-HQIPSAPQFVSDYA 78

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 79  DEMMKTLVAHSVHTSSPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 138

Query: 235 TY 236
             
Sbjct: 139 VL 140


>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
           13177]
          Length = 115

 Score = 35.8 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           ++ V +   +     +L +++ +  G V+          ++  NG  +   E+   G+NY
Sbjct: 41  KIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVVSGENY 100

Query: 297 TIRITD 302
            ++I D
Sbjct: 101 GLKIID 106


>gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica]
 gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 35.8 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++     + 
Sbjct: 232 VKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMANGVLLGNGELVQMNDTLGVE 291

Query: 300 ITDRINFD 307
           I + ++  
Sbjct: 292 IHEWLSES 299


>gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica]
 gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica]
          Length = 303

 Score = 35.8 bits (81), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 29/68 (42%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
           V ++  +  K  TL ++  +   Q++      +    + ANG  + + EL ++     + 
Sbjct: 232 VKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMANGVLLGNGELVQMNDTLGVE 291

Query: 300 ITDRINFD 307
           I + ++  
Sbjct: 292 IHEWLSES 299


>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
 gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
          Length = 518

 Score = 35.8 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 29/251 (11%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S    + +   +LG + E      +  L+ +E    +
Sbjct: 268 ERPCIVTTVEFVEGLKSSNTFIISKQAALVMANLMLGGTGE---VDEDAELTELELSAMQ 324

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDF---------YDIDYLKKNTNRLSNEFVTT 183
             + Q+    +  +++ +    + SP + +           DID  K        E  + 
Sbjct: 325 EVMNQMMGYSATAMSEMLGKKIDISPPIVEVCNVGDAMIQKDIDGGKTVEVIFPLEVESL 384

Query: 184 IN------MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTY 236
           I        N  +    +  +L + +E   +T +  +     +E  Q E      +    
Sbjct: 385 IKTPMYQIFNPELAKEIAHMMLSVQEEVQAETPVEEVVETPPAEPIQVEKATPQISTTET 444

Query: 237 QL-----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
           +       + ++      K  L D +T     ++      +    L ANG  I S  L R
Sbjct: 445 EAVIDSIPITLEVIFGTAKVKLADFITWCEKDIVILKESYEQPLSLLANGIHIGSGTLVR 504

Query: 292 VGKNYTIRITD 302
           V  ++ I+IT+
Sbjct: 505 VNDHFGIKITE 515


>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
 gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
 gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
 gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
 gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
 gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
 gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
 gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
 gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
 gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
          Length = 157

 Score = 35.8 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 138 KFGIRLTDVISPSERI 153


>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
           cytotoxicus NVH 391-98]
          Length = 119

 Score = 35.8 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL S  +   Q E+           +++ +  ++      L DV  LK+G V+  
Sbjct: 4   EVSPVSLMSLEEYAIQREEQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|146292569|ref|YP_001182993.1| pyridoxal-dependent decarboxylase [Shewanella putrefaciens CN-32]
 gi|145564259|gb|ABP75194.1| Pyridoxal-dependent decarboxylase [Shewanella putrefaciens CN-32]
          Length = 549

 Score = 35.8 bits (81), Expect = 8.0,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  + I    +  +  +
Sbjct: 21  TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FKIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 157

 Score = 35.8 bits (81), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 138 KFGIRLTDVISPSERI 153


>gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein
           [Achromobacter xylosoxidans C54]
          Length = 396

 Score = 35.8 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKN 295
           Q+ V +   +  +  TL  + TL +G+V          C  + ANG E+   EL  V  N
Sbjct: 324 QVPVRLGFDLGERLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVEGN 383

Query: 296 YTIRIT 301
             +R+ 
Sbjct: 384 IGVRLK 389


>gi|120599435|ref|YP_964009.1| pyridoxal-dependent decarboxylase [Shewanella sp. W3-18-1]
 gi|120559528|gb|ABM25455.1| Pyridoxal-dependent decarboxylase [Shewanella sp. W3-18-1]
          Length = 549

 Score = 35.8 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  + I    +  +  +
Sbjct: 21  TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FKIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
           Clip81459]
 gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
 gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
          Length = 515

 Score = 35.8 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 37/260 (14%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 317

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDY------------------------ 168
             + Q+    +  +++ + T  + SP   +F +                           
Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGL 377

Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFV---LIIPQETLLKTTLISLSSQNKSENQSE 225
           LK    ++ N         + +   A          P E +    L      +++  + +
Sbjct: 378 LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKLAEP--VHQAVIEEK 435

Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
           + +    +    + V ++      K  L+  ++     VI          +L+ NG  I 
Sbjct: 436 ETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIG 495

Query: 286 SCELGRVGKNYTIRITDRIN 305
              L RV  ++ I++T+ + 
Sbjct: 496 KGILVRVDDHFGIQMTELVR 515


>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
 gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
 gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
          Length = 149

 Score = 35.8 bits (81), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 68  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 127

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 128 KFGIRLTDVVTPSERLRR 145


>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
 gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
 gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
 gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
           A]
          Length = 515

 Score = 35.8 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 317

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N +       +   + +E 
Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVEG 376

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234
           +     L  P   +         +Q     Q++++ +  A                    
Sbjct: 377 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAV 431

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                           + V ++      K  L+  ++     VI          +L+ NG
Sbjct: 432 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 491

Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305
             I    L RV  ++ I++T+ + 
Sbjct: 492 VTIGKGILVRVDDHFGIQMTELVR 515


>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
 gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
           Paris]
          Length = 111

 Score = 35.8 bits (81), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 40/96 (41%)

Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           QN+    + D  +        + V++   I   K T+++++ L  G ++           
Sbjct: 14  QNQGNPLNPDSGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 73

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
           +  NG  +   E+  V   + +R+TD ++  ++  +
Sbjct: 74  VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKR 109


>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
 gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
          Length = 157

 Score = 35.8 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V I   +     ++++++ L  G VI           +  NG  I   E+  V +
Sbjct: 78  ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 138 KFGIRLTDVISPSERI 153


>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
 gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
          Length = 139

 Score = 35.8 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%)

Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
           +   + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V 
Sbjct: 56  RVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVN 115

Query: 294 KNYTIRITDRINFDQKSLK 312
             + IR+TD +   ++  +
Sbjct: 116 DKFGIRLTDVVTPSERLRR 134


>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
 gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
          Length = 181

 Score = 35.8 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V +
Sbjct: 99  IMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVEE 158

Query: 295 NYTIRITDRINFDQKSLKNFLHKR 318
            Y IR+TD I   ++  +  L+ R
Sbjct: 159 KYGIRLTDIITPSERINR--LNNR 180


>gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica]
 gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica]
 gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 303

 Score = 35.8 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
             QL V ++  +  K+ TL D+  +   Q++      +    + ANG  + + EL ++  
Sbjct: 227 LSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVEIMANGVLLGNGELVQMND 286

Query: 295 NYTIRI 300
              + I
Sbjct: 287 TLGVEI 292


>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 119

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++ +  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                    +  +  ++   E   + + + I I++ I  D+K
Sbjct: 64  EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISE-IEADKK 104


>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
 gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
          Length = 179

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 97  IMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVED 156

Query: 295 NYTIRITDRINFDQKSLKNFLHKR 318
            Y IR+TD I   ++  +  L+ R
Sbjct: 157 KYGIRLTDIITPSERINR--LNNR 178


>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
 gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
          Length = 119

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 26/70 (37%)

Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
           + + +SL    +   +  +           +++++  ++     TL DV  LK+G V+  
Sbjct: 4   EVSPVSLMGLEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEV 63

Query: 268 LHREKTCAIL 277
                    +
Sbjct: 64  EKNLGHKVDV 73


>gi|298675134|ref|YP_003726884.1| restriction endonuclease [Methanohalobium evestigatum Z-7303]
 gi|298288122|gb|ADI74088.1| restriction endonuclease [Methanohalobium evestigatum Z-7303]
          Length = 366

 Score = 35.8 bits (81), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%)

Query: 223 QSEDLIDPFARKTYQLN-VNIDTRINL-----KKTTLKDVVTLKIGQVIPFLHREKTCAI 276
           + ED  D           +    +I         T LKD++ L    V            
Sbjct: 187 KDEDFEDRLQEYLKNTEDLEFKCQIAEIIHEIGNTPLKDLLQLMNSDV-EDEELPDNPDK 245

Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
           L+    E+  C++ R    Y IR  +  + DQ
Sbjct: 246 LTPKQLELAVCKIYREKGYYAIRTKNTNDKDQ 277


>gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
 gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           cenocepacia MC0-3]
          Length = 364

 Score = 35.8 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 197 FVLIIPQETLLKTTLI---SLSSQNKSENQSEDLIDPF-ARKTYQLNVNIDTRINLKKTT 252
               +   TL    L+     +  +++++      D        +L + +   I      
Sbjct: 246 MHQYVAHATLDGPRLVLDTEPAMTDRNDHPVPGAPDAETQTSLDELELPVSFEIETVTLP 305

Query: 253 LKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
           L  +  L+ G VI            L A G+ I   EL  VG+   +R+ D
Sbjct: 306 LAQLSALRPGYVIELRGTLRDARIRLLAYGQLIGIGELVTVGEQLGVRVID 356


>gi|319425869|gb|ADV53943.1| Pyridoxal-dependent decarboxylase [Shewanella putrefaciens 200]
          Length = 549

 Score = 35.8 bits (81), Expect = 8.8,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+    +LS +E+KL++     +   +        E   + +  + I    +  +  +
Sbjct: 21  TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FKIPTQPRFVSDYT 79

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           +E    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 80  DEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139

Query: 235 TY 236
             
Sbjct: 140 VL 141


>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
 gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
          Length = 154

 Score = 35.8 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + VNI   +   +  +++++ L  G VI           +  NG  I   E+  V +
Sbjct: 75  ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 134

Query: 295 NYTIRITDRINFDQKS 310
            + IR+TD I+  ++ 
Sbjct: 135 KFGIRLTDVISPSERI 150


>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 148

 Score = 35.8 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 67  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 127 KFGIRLTDVVTPSERLRR 144


>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
 gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
           HTCC2207]
          Length = 108

 Score = 35.8 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +     L+    S +  +      A     + V I   +      ++D++ L  G V+
Sbjct: 1   MAENNPDVLADDVLSTDLDDLKNKINADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVV 60

Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
                      L  N   +   E+  V + Y +R+T  I    +
Sbjct: 61  ELDRIAGEPLDLLVNNTLVAQGEVVLVNERYGVRLTSVIPTADR 104


>gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia
           multivorans ATCC 17616]
 gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia
           multivorans ATCC 17616]
          Length = 385

 Score = 35.8 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTI 298
           V++   +      L ++  L+ G VI          I L ANG  I +  L  VG+   +
Sbjct: 313 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 372

Query: 299 RI 300
           R+
Sbjct: 373 RV 374


>gi|308803651|ref|XP_003079138.1| Cyclophilin type, U box-containing peptidyl-prolyl cis-trans
           isomerase (ISS) [Ostreococcus tauri]
 gi|116057593|emb|CAL53796.1| Cyclophilin type, U box-containing peptidyl-prolyl cis-trans
           isomerase (ISS) [Ostreococcus tauri]
          Length = 386

 Score = 35.8 bits (81), Expect = 9.0,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
           A  E       R L+  +  + ++   ++     + +        ++ D +  D  +K  
Sbjct: 109 AQGEKALDELERVLTDFQVIVEQKDKQEVPLAQQEALQLVGRIEEDMIDGFPFDVPEKFA 168

Query: 174 NRLSNEFVTTINMNMTIEN----VASSFVLII-----PQETLLKTTLISLSSQNKSENQS 224
           +R   +   T+ M + I+N          +++     P        LI+L   +    Q 
Sbjct: 169 DRPLLKGRATVEMQVKIKNNANTDGGVMTIVLDGYNAPVSAGNFADLINLGFYDNMPIQR 228

Query: 225 ED----------LIDPFARKTYQLNVNIDTRIN-----LKKTTLKDVVTLKIGQVIPFLH 269
            D            D F +   + +V ++  +        + TL+D+   +   V+PF  
Sbjct: 229 SDGFVVQSGKPRDGDGFKQDGVERDVPLEIMVQGDKVPEYEFTLEDLGRYRAQPVLPFNA 288


>gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2M]
 gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2]
 gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2]
 gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family
           [Burkholderia multivorans CGD2M]
          Length = 385

 Score = 35.8 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTI 298
           V++   +      L ++  L+ G VI          I L ANG  I +  L  VG+   +
Sbjct: 313 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 372

Query: 299 RI 300
           R+
Sbjct: 373 RV 374


>gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           vietnamiensis G4]
 gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
           vietnamiensis G4]
          Length = 392

 Score = 35.8 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
           + +  L    +        +   D   R    L V++   +      L ++  L+ G VI
Sbjct: 286 IREMPLEPTRTDTPPATAHDAPPDDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVI 345

Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300
                     I L ANG  I +  L  VG+   +R+
Sbjct: 346 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 381


>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
 gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
 gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
 gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
          Length = 144

 Score = 35.8 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 63  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 123 KFGIRLTDVVTPSERLRR 140


>gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella
           chejuensis KCTC 2396]
 gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella
           chejuensis KCTC 2396]
          Length = 397

 Score = 35.8 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%)

Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
            L V +   +  +  TL  + +L  GQ I           L    + I   EL +VG   
Sbjct: 302 DLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGDQI 361

Query: 297 TIRIT 301
             RIT
Sbjct: 362 GARIT 366


>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
           HTCC2080]
          Length = 112

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 32/76 (42%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +  ++ T+K+++ L  G V+ F         L  NG  +   E+     
Sbjct: 32  LMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVVSAEG 91

Query: 295 NYTIRITDRINFDQKS 310
            + +R+ D ++  ++ 
Sbjct: 92  QFGLRLVDVVSPKERL 107


>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
 gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
          Length = 378

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
           P       L++ +   + L +T  ++K+++ L  G +I           +  N + +   
Sbjct: 292 PIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 351

Query: 288 ELGRVGKNYTIRITDRINFDQKS 310
           E+  + +N+ +R+TD ++  ++ 
Sbjct: 352 EVVVIEENFGVRVTDILSQAERI 374


>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
 gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
          Length = 148

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 67  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 127 KFGIRLTDVVTPSERLRR 144


>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
           Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
           motor switch protein FliY
 gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
 gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 378

 Score = 35.8 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
           P       L++ +   + L +T  ++K+++ L  G +I           +  N + +   
Sbjct: 292 PIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 351

Query: 288 ELGRVGKNYTIRITDRINFDQKS 310
           E+  + +N+ +R+TD ++  ++ 
Sbjct: 352 EVVVIEENFGVRVTDILSQAERI 374


>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
 gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
           Corby]
          Length = 109

 Score = 35.8 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 40/101 (39%)

Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
            S    N+    + D  +        + V++   I   K T+++++ L  G ++      
Sbjct: 7   TSAEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66

Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
                +  NG  +   E+  V   + +R+TD ++  ++  +
Sbjct: 67  GDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKR 107


>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
           C54]
          Length = 100

 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   + T+K+++ L  G V+           +  NG  I   E+  V  
Sbjct: 18  IMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVED 77

Query: 295 NYTIRITDRINFDQKSLKNFLHKR 318
            Y IR+TD I   ++  +  L+ R
Sbjct: 78  KYGIRLTDIITPSERINR--LNNR 99


>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
 gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
          Length = 142

 Score = 35.8 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 60  ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 119

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 120 KFGIRLTDIVTPSERMRR 137


>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 172

 Score = 35.8 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
           +V +   I L +TT  +KDV+ L  G V+           + ANGK +   +L  +   Y
Sbjct: 93  DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYY 152

Query: 297 TIRITDRINF 306
            ++IT  ++ 
Sbjct: 153 GVQITQIVDP 162


>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
 gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
          Length = 157

 Score = 35.8 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   +  +K+++ L  G VI           +  NG  I   E+  V +
Sbjct: 77  ILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDVLVNGCLIAQGEVVVVNE 136

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD I   ++  K
Sbjct: 137 KFGIRLTDIITPSERIRK 154


>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
 gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
          Length = 301

 Score = 35.8 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 16/205 (7%)

Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ----ESSPNLEDFYDIDYLKK 171
            +  P+     LS +E         Q+ A     I        E +P     ++      
Sbjct: 85  GQPPPEDDASELSVLELSAVAEAANQMMAAAAAAIGVVLGQDVEIAPPETRLFNSASEAI 144

Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS------SQNKSENQSE 225
           +   ++          +  E      V ++P   +++ T           S   S+    
Sbjct: 145 DAYEMA-PHGARATFRVCDEPCR--LVQLVPNAFVVRMTRALDEMGVEHVSGGASDGGEG 201

Query: 226 DLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
           D+ +  A       + V +   +   +  L     +  G V+    +      L  NG  
Sbjct: 202 DVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVNGLR 261

Query: 284 IYSCELG-RVGKNYTIRITDRINFD 307
             S  L       + +R+ +    D
Sbjct: 262 FASGTLVLTDDGEWALRLAEVAGRD 286


>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
 gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
          Length = 515

 Score = 35.8 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGIVQ---EDAELTELEVSAVQ 317

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N +       +   + ++ 
Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVDG 376

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234
           +     L  P   +         +Q     Q++++ +  A                    
Sbjct: 377 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTV 431

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                           + V ++      K  L+  ++     VI          +L+ NG
Sbjct: 432 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 491

Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305
             I    L RV  ++ I++T+ + 
Sbjct: 492 VTIGKGILVRVDDHFGIQMTELVR 515


>gi|170727475|ref|YP_001761501.1| pyridoxal-dependent decarboxylase [Shewanella woodyi ATCC 51908]
 gi|169812822|gb|ACA87406.1| Pyridoxal-dependent decarboxylase [Shewanella woodyi ATCC 51908]
          Length = 551

 Score = 35.8 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
           T+P+  + +LS +E+ +++  +  +   +        E   + +  + I    +  +  +
Sbjct: 20  TVPEAPDSTLSVIEQNISQNLMGFLQESVVAVEKPLSEIERDFQQ-HQIPSAPQFVSDYA 78

Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
           ++    +   +++ +  +        +P   L  + ++   +QN  + ++     P  R+
Sbjct: 79  DDMMKTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 138

Query: 235 TY 236
             
Sbjct: 139 VL 140


>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
           BC]
 gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
           BC]
          Length = 151

 Score = 35.8 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%)

Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
              + V +   +   K  +K ++ L  G V+           +  NG  I   E+  V  
Sbjct: 70  VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129

Query: 295 NYTIRITDRINFDQKSLK 312
            + IR+TD +   ++  +
Sbjct: 130 KFGIRLTDVVTPSERLRR 147


>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
 gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
 gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
 gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
 gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
 gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
 gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
          Length = 515

 Score = 35.8 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%)

Query: 78  KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
           +   + +         S+     S N  + + + ++           +  L+ +E    +
Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGIVQ---EDAELTELEVSAVQ 317

Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
             + Q+    +  +++ + T  + SP   +F +        N +       +   + ++ 
Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVDG 376

Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234
           +     L  P   +         +Q     Q++++ +  A                    
Sbjct: 377 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTV 431

Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
                           + V ++      K  L+  ++     VI          +L+ NG
Sbjct: 432 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 491

Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305
             I    L RV  ++ I++T+ + 
Sbjct: 492 VTIGKGILVRVDDHFGIQMTELVR 515


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.137    0.322 

Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,511,682,907
Number of Sequences: 14124377
Number of extensions: 153903204
Number of successful extensions: 510324
Number of sequences better than 10.0: 2184
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 724
Number of HSP's that attempted gapping in prelim test: 505673
Number of HSP's gapped (non-prelim): 2821
length of query: 318
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 179
effective length of database: 2,879,505,227
effective search space: 515431435633
effective search space used: 515431435633
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 81 (35.8 bits)