BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] (318 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI Sbjct: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP Sbjct: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 Query: 301 TDRINFDQKSLKNFLHKR 318 TDRINFDQKSLKNFLHKR Sbjct: 301 TDRINFDQKSLKNFLHKR 318 >gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/317 (65%), Positives = 254/317 (80%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++ Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300 Query: 301 TDRINFDQKSLKNFLHK 317 DRINFDQ+SL+NFLHK Sbjct: 301 QDRINFDQESLRNFLHK 317 >gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 169/304 (55%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + +D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + ++ +S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316 Score = 211 bits (538), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 168/304 (55%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L Y D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + ++ + S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512] Length = 314 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 168/304 (55%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 11 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 70 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ N A+L +WS N + C N VITL+E+LLGA+ ETI + +R LS +E Sbjct: 71 LVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRLLSIIEL 130 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 131 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINMSLTLAG 190 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ T Sbjct: 191 IVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARIRLQDLT 250 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 251 LRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 310 Query: 313 NFLH 316 + ++ Sbjct: 311 HLMN 314 >gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84] gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84] Length = 314 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M QS H + + P+L A+LTG LGD T+ K+ ++ G +Y +FLP I K + LDV + Sbjct: 1 MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Y C+SG S ++ N SL +WS NF +GC V+TL+E+LLGA ETI Sbjct: 60 GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R LS +E L+ +I+ VL ++ T P L+ Y+I+ +++F Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I M +++ S V+I+PQ LL+T + + ++N S + + + + V Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSASTGA-WAEQLNEQVRRSQV 238 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL + L +G VIPF+ +SAN K++Y CE GR G+NYT+R+ Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + L++ ++ Sbjct: 299 KDTVNSDDELLRHLMN 314 >gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] Length = 316 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 167/304 (54%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEFAAAINMSLTLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LI+PQ LLKT + + ++ S + + + + +V ++ RI L+ T Sbjct: 193 IVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4] gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4] Length = 319 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 169/304 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ LLARLTG LGD K++EK+ G LY +FLP +F + +L +++ Y +SG Sbjct: 15 PMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLMR 74 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 +I S +NFV + SL +WS NF + C N VITL+E LLG E I + R LS +E Sbjct: 75 DLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNIE 134 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ T P E ++ + + EF ++M++ + Sbjct: 135 LDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKLG 194 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LIIPQ+TLLKT + + S+N+ ++ + A + + V ++ RI+L+ Sbjct: 195 KITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQSL 254 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 +L V L G VIPFL + +SANG+++Y+CE GR G +YT+R+ + D + L Sbjct: 255 SLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSELL 314 Query: 312 KNFL 315 ++ + Sbjct: 315 RHLM 318 >gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42] gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42] Length = 316 Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 165/303 (54%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +FLP I K + LDV +SY C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTVSYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ N A+L +WS N + C N VITL+E+LLGA+ +TI + R LS +E Sbjct: 73 LVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIEEPAERLLSVIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + D + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F LIIPQ LLKT + + ++ S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFL 315 + + Sbjct: 313 HLM 315 >gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 167/304 (54%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGDK + KI SS G +Y +F P + K + L+V ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N +L +WS N I C N VITL+E+LLGA+ +TI + +R LS +E Sbjct: 73 LIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIEEPADRLLSIIEM 132 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA +I+ VL ++ P+L + ++ + +EF INM++T+ Sbjct: 133 DLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEFAAAINMSITLAG 192 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + S F L++PQ LLKT + + ++ S + + + + +V ++ +I L+ T Sbjct: 193 IVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHVTLEAKIRLQDLT 252 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + ++ Sbjct: 253 LRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELIR 312 Query: 313 NFLH 316 + ++ Sbjct: 313 HLMN 316 >gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3] gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] Length = 319 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/301 (31%), Positives = 165/301 (54%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI K+ S +G+LY +FLP IF + + +D+ Y +SG + +I + Sbjct: 18 LLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTDLIAN 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 NF + SL +W NF + N VI L+E +LGA+ +TI + RSLS +E LA Sbjct: 78 IGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIELDLAA 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I VL ++ ++ + + ++ + T+ M + I V+S Sbjct: 138 MVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGKVSSE 197 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++ + + ++ + + +D + + + V ++ RI L+ TL+ + Sbjct: 198 FALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLTLRTI 257 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 258 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 317 Query: 315 L 315 + Sbjct: 318 M 318 >gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] Length = 319 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + +I + Sbjct: 18 LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 77 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E LA Sbjct: 78 VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 137 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I+ VL ++ ++ ++ + ++ + TI M + I V+S Sbjct: 138 MVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 197 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ TL+ + Sbjct: 198 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 257 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 258 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 317 Query: 315 L 315 + Sbjct: 318 M 318 >gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM Length = 321 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + +I + Sbjct: 20 LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 79 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E LA Sbjct: 80 VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 139 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I+ VL ++ ++ ++ + ++ + TI M + I V+S Sbjct: 140 MVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 199 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ TL+ + Sbjct: 200 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 259 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 260 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 319 Query: 315 L 315 + Sbjct: 320 M 320 >gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens] gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens] Length = 321 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + +I + Sbjct: 20 LLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTDLIAN 79 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E LA Sbjct: 80 VGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIELDLAA 139 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + +I+ VL ++ ++ ++ + ++ + TI M + I V+S Sbjct: 140 MVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGKVSSE 199 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ TL+ + Sbjct: 200 FSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLTLRTI 259 Query: 257 VTLKIGQVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L G VIPF L ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + L++ Sbjct: 260 SRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEILRHL 319 Query: 315 L 315 + Sbjct: 320 M 320 >gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] Length = 315 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 155/299 (51%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLAR+ G LGD K I++++ L ++ + LP + + + DV I+Y ++G + ++ Sbjct: 16 LLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAGFRAGLRNELVAG 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F IGC + ++I L+E LLGA I + RSLS +E +A Sbjct: 76 LGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + + +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT +S K +N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTI 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 ARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTHGSEQDILRHIM 314 >gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 156/299 (52%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC + ++I L+E LLGA +I + RSLS +E +A Sbjct: 76 LGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 156/299 (52%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC + ++I L+E LLGA +I + RSLS +E +A Sbjct: 76 LGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 315 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/299 (30%), Positives = 156/299 (52%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNDLIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC + ++I L+E LLGA +I + RSLS +E +A Sbjct: 76 LGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL + Sbjct: 196 FSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTLDTL 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + +SANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] Length = 315 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 155/299 (51%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LLAR+TG LGD KTI + + LG+++ + LP++ K++ D+ I Y + G + +I Sbjct: 16 LLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAGVKMGFRNELIAD 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 E + S SL +W + F IGC + ++I L+E LLGA I + R+LS +E +A Sbjct: 76 LGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLPRALSKIEIDVAV 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 +I+ + + P + ++ L + + +I+M + V S+ Sbjct: 136 PVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASIDMTFGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 F +IIPQ LLKT ++ + ++E+ D + + + V ++ RI L+ TL + Sbjct: 196 FSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEARIQLESLTLDTI 255 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 L+ G VIPF + ++ANG+++Y CE GR G YT+R+ D +Q L++ + Sbjct: 256 SRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTHGSEQDILRHIM 314 >gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti] Length = 258 Score = 125 bits (314), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 122/237 (51%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y ++G + +I + Sbjct: 16 LIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAGFRTGLRNELIAA 75 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + SL +W ++F +GC ++I L+E LLG + +I + RSLS +E +A Sbjct: 76 LGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPPRSLSKIEIDVAL 135 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++I+ VL ++ P + Y+ K L + F +I+M + + V S+ Sbjct: 136 PVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASIDMTIGLGPVLST 195 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 F +I+PQ TLLKT ++S + N + + + + V ++ RI L+ TL Sbjct: 196 FSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEARIRLESLTL 252 >gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56] Length = 209 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 112/208 (53%) Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 +E+LLGA+ +TI + +R LS +E LA +I+ VL ++ P+L + D Sbjct: 1 MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + +EF INM++T+ + S F LI+PQ LLKT + + ++ S + Sbjct: 61 TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + +V ++ RI L+ TL+ + L +G VIPF + +SAN KE+Y C Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFL 315 E GR G+NY +R+ D +N D + +++ + Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLM 208 >gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5] Length = 188 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 97/187 (51%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E LA +I+ VL ++ P+L + D + +EF INM++T Sbjct: 2 IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ Sbjct: 62 LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181 Query: 310 SLKNFLH 316 +++ ++ Sbjct: 182 LIRHLMN 188 >gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] Length = 315 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 72/306 (23%), Positives = 127/306 (41%), Gaps = 2/306 (0%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 +T P LL R+ G GD IE SL L + F+ ++ + Q G Sbjct: 11 DTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSARPGEIQQG 70 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 ++ F ++ VF + WS + C LVI ++E LLG S + R LS Sbjct: 71 SRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELDIAARPLS 130 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++ Q++ L + S + +D + + + I + + Sbjct: 131 GIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKPM-LDIPEAEDDPKPDFHAAAITLEL 189 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 +V + LI+PQ LLKT I+ S +N +D + + + +N+ + L Sbjct: 190 QFGSVVTPLTLILPQSILLKTKPIT-SKKNAPNAVDDDWAERLNARVSRSQINLQAAVAL 248 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ++ L++G +I F LSANGK +Y+C LG+ G Y +++ D+ Sbjct: 249 APLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVEGDAGPDE 308 Query: 309 KSLKNF 314 +F Sbjct: 309 NWRSDF 314 >gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771] Length = 169 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 73/144 (50%), Gaps = 4/144 (2%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I N A+L +WS N + C N VITL+ + +R LS +E Sbjct: 73 LIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDREPADRLLSIIEL 132 Query: 133 KLAKRTIAQISAVLNQCISTTQES 156 LA +I+ +C + Q + Sbjct: 133 DLAVMVFDKIA----KCCARGQRA 152 >gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 303 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 23/268 (8%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S S +SG F ++ ++ N V W + +G + V T++E LLGA P Sbjct: 48 SLMSVESGLFGDLLEPYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPP 107 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S++E ++A+ T QI L + ++ LE DF I Sbjct: 108 VEEARNFSSIELRIAQMTFEQIGKALEAAFALVSVATLKLERTETRMDFAII-------G 160 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-----LID 229 R SN+ V + + N LIIPQ +L SLS E+ S D I Sbjct: 161 RRSNKAVAAKFLLQAL-NRGGEMFLIIPQ-AVLNPMRQSLSKVLTGESTSRDPRWEKQIS 218 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 RKT V + + + TL ++ LK+GQV+ ++ L N + ++ C++ Sbjct: 219 TEVRKT---EVTLRAVLEERTLTLGEIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQV 275 Query: 290 GRVGKNYTIRITDRINFDQKSLKNFLHK 317 G+ Y +R+ D+I+ D++ + L + Sbjct: 276 GQANGAYVLRVEDQIDQDKEFMDGVLAR 303 >gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 321 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 7/259 (2%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ S + + + +++ V + W + +G + +++E LLG E Sbjct: 65 LAVQSVSNERIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEE 124 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSN 178 P L +RSL+ VE++LA R + + L ++S +E + +++ + T R SN Sbjct: 125 PFLEDRSLTNVEQRLAYRMFEEAATALETAFEAIADTSLKVERLENRMEFAQ--TGRKSN 182 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY 236 V M I +IIPQ L L+ L + S + + F ++ Sbjct: 183 PCVLA-KMTAEIIGREGEIFIIIPQSVLNPLRENLTQVLS-GEVAGRDTRWTKQFQQEVQ 240 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V + + ++ TL++V ++G V+ KT L N + +++C LG+V +Y Sbjct: 241 RTEVKLTAILEEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSY 300 Query: 297 TIRITDRINFDQKSLKNFL 315 T+R+ + I + + L + L Sbjct: 301 TVRVEELIEQEGELLDDIL 319 >gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 335 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V + W + +G + + T++E L G+ P Sbjct: 81 SLSGVESGRFGEFLDAYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPP 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S +E ++A+ Q+ L +++ LE +F I Sbjct: 141 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERTETRMEFAVI-------G 193 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232 R SN+ V + + N LIIPQ T+L +L+ E+ + D A Sbjct: 194 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALAKVLTGESAARDPRWAQQIA 251 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + TL ++ LK+GQV+ T L N + ++ C G+ Sbjct: 252 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 311 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 Y +R+ D IN +++ L Sbjct: 312 QGAYVLRVEDAINPEKEGGHGLL 334 >gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] Length = 319 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/268 (22%), Positives = 126/268 (47%), Gaps = 19/268 (7%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 IS + ++ + ++ F+ N + + W + +G + + TL++ L GA Sbjct: 62 ISVSYVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEP 121 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISA-VLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLS 177 P R S +E ++A RT+ +++A L + + E++ +E +D+ R + Sbjct: 122 PIDDERPFSNIETRIA-RTMFEVAAKALAESFAPIAETTLKIERIESRMDF--AVVGRRN 178 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI-----SLSSQNKSENQSEDLIDP 230 N V + I F+ ++P TL L+ L +SS++K Q Sbjct: 179 NPAVVARLLQQAIGRGGEVFI-VMPHSTLNPLRQRLSQVLSGEMSSRDKQWTQH------ 231 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 F + + V ++ + ++ +L D+ L++GQVI ++ L+ N + +++C+LG Sbjct: 232 FHNEIQRTEVKLEAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQLG 291 Query: 291 RVGKNYTIRITDRINFDQKSLKNFLHKR 318 ++ +YT++I + I+ ++K L + L R Sbjct: 292 QLNGSYTLQIDELIHEEEKDLFDDLRNR 319 >gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] Length = 344 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 5/257 (1%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 90 SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 149 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R+ S +E ++A+ Q+ L +++ LE + R SN+ Sbjct: 150 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERM-ETRMEFAVIGRRSNKA 208 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQL 238 V + + N LIIPQ T+L +L E+ + D + A + + Sbjct: 209 VQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKT 266 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + + + TL ++ LK+GQV+ T L N + ++ C G+ +Y + Sbjct: 267 TVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVL 326 Query: 299 RITDRINFDQKSLKNFL 315 R+ + IN +++ L Sbjct: 327 RVEESINPEKEGGHGLL 343 >gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5] Length = 98 Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 48/82 (58%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +H Sbjct: 13 MDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKNH 72 Query: 73 IIHSFKENFVFSQASLSSWSSN 94 +I N A+L +WS N Sbjct: 73 LIDDLSANVTLVDATLRNWSQN 94 >gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 340 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 86 SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 145 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S +E ++A+ Q+ L +++ LE +F I Sbjct: 146 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERMETRMEFAVI-------G 198 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232 R SN+ V + + N LIIPQ T+L +L E+ + D + A Sbjct: 199 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIA 256 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + TL ++ LK+GQV+ T L N + ++ C G+ Sbjct: 257 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 316 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 +Y +R+ + IN +++ L Sbjct: 317 QGSYVLRVEESINPEKEGGHGLL 339 >gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] Length = 344 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + +SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 90 SLSGVESGRFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPP 149 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 R+ S +E ++A+ Q+ L +++ LE +F I Sbjct: 150 VEDERTFSAIELRIAQMVFEQVGKALESSFGLVSQTAFRLERMETRMEFAVI-------G 202 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFA 232 R SN+ V + + N LIIPQ T+L +L E+ + D + A Sbjct: 203 RRSNKAVQAKFLLQAL-NRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIA 260 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + TL ++ LK+GQV+ T L N + ++ C G+ Sbjct: 261 AEVQKTTVRLRAVLEERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQS 320 Query: 293 GKNYTIRITDRINFDQKSLKNFL 315 +Y +R+ + IN +++ L Sbjct: 321 QGSYVLRVEESINPEKEGGHGLL 343 >gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099] gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti MAFF303099] Length = 315 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/308 (21%), Positives = 130/308 (42%), Gaps = 21/308 (6%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + + L K ++ + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + F + + S+ S + + ++ L G ET Sbjct: 62 VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ Q++ LN S + L + + + L + I Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALNG--SGRRSLDLRLPVPRAMSGTEAKRHVLRDGAALRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-----FARKTYQLN 239 + ++ + + + +PQ I L+S++ + + + D P F+ + + Sbjct: 180 VLGISTPADSGTVTVTMPQR-------IVLASRDSAASTAGDDHGPSWRERFSEEVMRST 232 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + L + TL D+ +L++GQVI F ++ A LSA G+ ++ CE G++G+NYT+R Sbjct: 233 VALEATMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVR 292 Query: 300 ITDRINFD 307 I R FD Sbjct: 293 I--RHPFD 298 >gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] Length = 313 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 31/269 (11%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + +S + + I+ +++ N V + + +W S +G + TL+E G P Sbjct: 58 TVSSIGTERIGDILDAYENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPP 117 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 + R LS +E KLA+ + L ST E+ E DF I Sbjct: 118 NIEKRPLSNIEIKLAQTIFDLLPKALQTSFSTISETVFKFERLETKLDFAVI------AP 171 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFA 232 R + F+T IN+ + + ++IPQ +L + Q + + D + DP Sbjct: 172 RNTFGFITRINLRILGRH--GEMFVVIPQSSL------NSIRQELGRDLANDAVVRDPRW 223 Query: 233 RKTYQ-----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 K Q V + I L D LKIGQV+P K+ A L N + ++ C Sbjct: 224 TKQIQNEISRTEVEVRAIIEDSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWC 283 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++G+ YT+R+ D I DQ+ K+F+ Sbjct: 284 QVGQEDGFYTLRVEDFI--DQE--KDFIE 308 >gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 309 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 25/269 (9%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S ++ +S +F I+ ++ N + W S+ +G + + T++E LLG+ P Sbjct: 54 SLSNVESQRFGDILEPYESNAIAGIFQAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPP 113 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE------DFYDIDYLKKNTN 174 RS S +E ++A+R Q+ + + ++ LE DF I ++N Sbjct: 114 LDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVADTPFKLERTELRMDFAVIG--RRNNQ 171 Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETL------LKTTLISLSSQNKSENQSEDLI 228 ++ +F+ + N ++IPQ L L L+ +S S + Sbjct: 172 AVAAKFL------LQALNRGGEMFIVIPQSVLNPMRQSLARILVGETSARDSRWTRQ--- 222 Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 A + + V + + K L ++ L +GQV+ ++ L N ++++ C+ Sbjct: 223 --IAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRVKLVGNDRDLFWCD 280 Query: 289 LGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +G+ +R+ I+ DQ+ + + L + Sbjct: 281 VGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309 >gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] Length = 309 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/265 (21%), Positives = 110/265 (41%), Gaps = 17/265 (6%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S +S ++G+ ++ ++ V + W S+ +G + V T++E L GA P Sbjct: 54 SLSSIETGRIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPP 113 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQC---ISTTQESSPNLEDFYDIDYLKKNTNRLS 177 RS S +E ++++ Q+ L+ +S TQ E D + + N Sbjct: 114 VDDERSFSNIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQETRMDFAVIGRRNN--- 170 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 T + N +IIPQ L +L+ +E D P K + Sbjct: 171 --LAVTAKFLLQALNRGGEMFVIIPQSALTPMRQ-ALARTTPAETSGRD---PIWTKQIR 224 Query: 238 LNVN---IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 VN + R L++ L ++ K+GQV+ +T L + + ++ C LG+ Sbjct: 225 DEVNRTQVKVRAILEERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQA 284 Query: 293 GKNYTIRITDRINFDQKSLKNFLHK 317 Y +R+ ++IN +Q+ + + L + Sbjct: 285 EGAYVLRVEEQINLNQEFVDDILPR 309 >gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] Length = 319 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 62/279 (22%), Positives = 129/279 (46%), Gaps = 9/279 (3%) Query: 44 KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103 + + + ++K IS + ++ + ++ F+ N + + W + +G + Sbjct: 46 RLMADVMRQKSPSPSYISVSYVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDF 105 Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA-VLNQCISTTQESSPNLED 162 + TL++ L GA P R S +E ++A RTI +I+A L + + E++ +E Sbjct: 106 IFTLVDVLFGADGTEPPIDEERPFSNIETRIA-RTIFEIAAKSLAESFAPIAETTLKIER 164 Query: 163 FYD-IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK 219 +D+ R +N V + I FV ++P TL L+ L + S Sbjct: 165 IESRMDF--AVVGRSNNPAVVGRLLQQAIGRGGEVFV-VLPHATLNPLRQALSQVLSGEM 221 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 S + + F + + V ++ + ++ L ++ LK+GQVI ++ L+ Sbjct: 222 S-GRDKQWTQHFHNEIQRTEVKLEAILEEREMHLGELSNLKVGQVIELQATARSPVTLAC 280 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318 N + I++C+LG++ +YT++I + I+ ++K L + L R Sbjct: 281 NDQPIFTCQLGQLDGSYTLQIEELIHEEEKDLFDDLRNR 319 >gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] Length = 315 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 25/310 (8%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + ++ L K + + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + +NF + + S + + ++ L G + Sbjct: 62 VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ +++ LN + E L + ++ + L + I Sbjct: 122 RDLSPLEADVSTMVFQEVAQALNGSGQRSLEL--RLPAPRAMSGIEARRHVLRDGAAIRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-------FARKTYQ 237 + ++ + S +++PQ I L+ ++ + SE DP F+ + + Sbjct: 180 VLGISTPVDSGSITVMMPQR-------IVLAGRDGIASASE--ADPGTSWRARFSEEVMR 230 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V ++ + L + TL D+ L++GQVI F ++ A L A G+ ++ CE G++G+NYT Sbjct: 231 STVALEATMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYT 290 Query: 298 IRITDRINFD 307 +RI R FD Sbjct: 291 VRI--RHPFD 298 >gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/309 (19%), Positives = 130/309 (42%), Gaps = 28/309 (9%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ P+L R+ D + + S+S Y IS + ++ + Sbjct: 31 PMLPVLFDRMARVFAD--AMRQKSTSPSY-------------------ISVSCIENERIG 69 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 ++ ++ N + + W + +G + + T+++ L GA P RS S +E Sbjct: 70 DVLDEYEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEERSFSNIE 129 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTINMNMTI 190 ++A+ + L + S E++ +E +D+ R +N V + I Sbjct: 130 TRIARSVFEVAAKALQESFSPIAETTLKIERVESRMDF--AVVGRRNNPAVVARLLLQAI 187 Query: 191 ENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 FV ++P TL L+ L + S S + + F + + V + + Sbjct: 188 GRGGEIFV-VMPHSTLNPLRQRLSQVLSGEMS-GRDKQWTQHFQTEIQRTEVRLQAVLEE 245 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ TL ++ L++GQ+I ++ L N + I++C LG++ +YT+++ D I+ ++ Sbjct: 246 RELTLGEIANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVEDLIHLEK 305 Query: 309 KSLKNFLHK 317 + + L + Sbjct: 306 DIVDDLLSR 314 >gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] Length = 314 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 96/241 (39%), Gaps = 27/241 (11%) Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 +W S IG ++ + TL E L G P R LS++E +LA + + L Sbjct: 88 AWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKALDLFGRALQSA 147 Query: 150 ISTTQESSPNLE------DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 ST +++ LE DF I N F T + + I ++IPQ Sbjct: 148 FSTVSDTAFKLERVETRLDFAVIAP--------RNAFGVTAKIKLRILGRHGEMFILIPQ 199 Query: 204 ETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVN---IDTR--INLKKTTLKDV 256 L Q N S+D DP + + + I+ R I + L D+ Sbjct: 200 AALNSV------RQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDI 253 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 LK+G ++ T L N + ++ C LG+ YT+RI + ++ +Q+ + L Sbjct: 254 ADLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDEMLS 313 Query: 317 K 317 + Sbjct: 314 R 314 >gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110] gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/255 (20%), Positives = 110/255 (43%), Gaps = 13/255 (5%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + II ++ N V + W S I + V T++E + G+ P RS S Sbjct: 66 RVGDIIKDYEANAVAAVLYAEQWDSRIIIMLDRDFVFTMVEAMFGSDGAEPPLDVERSFS 125 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E +L + + + L + T + +E + R N +I N+ Sbjct: 126 NIEIRLVQALFERFAKALQSAFAGTSNVTFRVERV-ETAMASLAIGRSGN---MSICANI 181 Query: 189 TIENV--ASSFVLIIPQETL--LKTTL--ISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ + LIIP L L+ L + +S S+ + + ++ +T V + Sbjct: 182 MLQALYRGGQMFLIIPHSALNPLRQKLAHVVVSDGRASDPRWREQMESEVHRT---EVTL 238 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ K TL DVV ++GQV+ +T A L +N + ++ C++G++ Y +++ D Sbjct: 239 SAVLDEKMVTLGDVVKFQVGQVLELEATPRTLARLESNNQVLFWCQIGQLDGYYAMQVAD 298 Query: 303 RINFDQKSLKNFLHK 317 ++ ++ + + L + Sbjct: 299 PVDQKREFVDDILSR 313 >gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 315 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/305 (18%), Positives = 120/305 (39%), Gaps = 14/305 (4%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ RL G G+ + ++ L K + + V + + + + Sbjct: 13 LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + F + S+ S + + ++ L G + R LS +E ++ Sbjct: 73 RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 Q++ LN S + L + + L + I + ++ + Sbjct: 133 TMVFQQVAQALNG--SGKRSLDLRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-----FARKTYQLNVNIDTRINLKK 250 + + +PQ +L +S++ + S+D P F+ + + V ++ + L + Sbjct: 191 TVTVTMPQRVVL-------ASRDGAVPVSDDDHGPSWRARFSEEVMRSTVALEATMPLAR 243 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 TL D+ +IG VI F ++ A LSA GK ++ CE G++G+NYT+RI + Q Sbjct: 244 LTLGDLAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDF 303 Query: 311 LKNFL 315 + + Sbjct: 304 IDGLM 308 >gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 311 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 15/255 (5%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + S + S I+ ++ + + +W + IG + + T++E L GA P Sbjct: 56 SLSGVGSDRLSDIVDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPP 115 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNE 179 R S VE +A+ + L S + + LE +DYL RL+N Sbjct: 116 LDMPRVFSNVEMHVAQALFERFGKALQSSFSRASDVNFTLERVETRMDYLA--VGRLNNM 173 Query: 180 FVTTINMNMTIENVASSFVLIIPQETL-----LKTTLISLSSQNKSENQSEDLIDPFARK 234 V N+ + + ++IP L + +++ S + N S L R Sbjct: 174 AVCA-NILLQGLDRGGEMFIVIPHAALNPIRQALSQIVTGESASTDPNWSRQLHSEIKRT 232 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L ++ R TL +V +GQVI T L N + ++ C+LG++ Sbjct: 233 EVVLKAVLEER----PFTLGEVAGFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNG 288 Query: 295 NYTIRITDRINFDQK 309 Y++++ + + DQK Sbjct: 289 VYSLQVKE--SADQK 301 >gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] Length = 323 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 225 EDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 E +DP ++ Q +V I+ + TL +++ LK+GQV+P L + Sbjct: 226 EKRMDPLWTKRLRKEVSQAHVQIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRS 285 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 K +Y C LG++GKN++IR+TD I+ +++ + +H Sbjct: 286 GDKSLYKCSLGKIGKNFSIRVTDPIDEEKEMINELVH 322 >gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 275 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 15/255 (5%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + S + S I+ ++ + + +W + IG + + T++E L GA P Sbjct: 20 SLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPP 79 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNE 179 R S VE +A+ + L S + + L+ +DYL R +N Sbjct: 80 LDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLDRVETRMDYLA--IGRPNNM 137 Query: 180 FVTTINMNMTIENVASSFVLIIPQETL--LKTTL---ISLSSQNKSENQSEDLIDPFARK 234 V+ + ++ F+ +IP L ++T L ++ S + N S L R Sbjct: 138 AVSAQILLQGLDRGGEMFI-VIPHAALNPIRTALSQIVTGESASTDPNWSRQLHSEIQRT 196 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L ++ R TL +V +GQVI T L N + ++ C++G++ Sbjct: 197 EVVLRAVLEER----PFTLGEVAKFHVGQVIKLNATPNTMVRLECNNQRLFWCQMGQLNG 252 Query: 295 NYTIRITDRINFDQK 309 Y++++ + + DQK Sbjct: 253 AYSLQVKE--SADQK 265 >gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA 110] gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S +F ++S V S W + +NL+ ++++ LLG Sbjct: 131 VEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWDNFGMATVDSNLIYSMIDVLLGGRRG 190 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T ++ R +T+E +L KR + + A Q + + ID L+ N Sbjct: 191 TSQLRIEGRPYTTIETELVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 244 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 245 AISRPANAAIL-VRLRIDMEDRGGNIELLLPYATIEPIRGVLLQMFMGEKFGR------D 297 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P FA + Q +++D + LK ++ LK+G +P R + I Sbjct: 298 PVWEGHFATEIGQAEISVDAVLYEADIPLKQLMRLKVGDTLPLDMRADANVTVRCGDVTI 357 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 358 TEGRMGRVGDRVAIRVT 374 >gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] Length = 343 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTGLITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMD-VEFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 188 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSLA 246 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K ++V ID I ++ TLKDV+ K G +IP E +L Y C+LG Sbjct: 247 LKDEIMDIDVGIDATIVEQQITLKDVMEFKAGDIIPVELPEHI--VLRVEDLPTYRCKLG 304 Query: 291 RVGKNYTIRITDRI 304 + N +RIT++I Sbjct: 305 KTRDNLALRITEKI 318 >gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33] gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 316 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQGVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] Length = 339 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 9/224 (4%) Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 +G V ++E L GA R+L++VE +LA+ + +++ L ++T + Sbjct: 120 LGAERKFVFAMVEGLFGADGSEPFYEEERALTSVEIRLARLVLDRLAKALQISFASTAGA 179 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + L+ R + + +T S ++ PQ +L +L++ Sbjct: 180 ALALDPVEPKPEPAGAARRSGSALIC--RFRLTAFGAESEALVTFPQ-GVLDPLREALAA 236 Query: 217 QNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + QS D + +A++ V++ + + TL DV ++GQ++ Sbjct: 237 DPATTIQSADPL--WAQRMKDRITATEVSLTAVMERRDLTLGDVARFEVGQIVELPVSPT 294 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 L G+ ++ CE+G+ YTIRI D ++ +Q+ + + L Sbjct: 295 GLIALECEGQTLFWCEIGQKDGAYTIRIADFVDKEQEFIDDMLG 338 >gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1] gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94] gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 316 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330] gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445] gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686] gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94] gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1] gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1] gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis M292/94/1] gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330] gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 316 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis M163/99/10] gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 316 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2] gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2] Length = 253 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 102/239 (42%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 10 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 69 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T S P D D ++ LS F T ++ +T Sbjct: 70 IANLLAGHLAGALDRVFNTG-SSQPLFAPGDCIDTADFDRDNFELSRLF--TCHIAVTAA 126 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 127 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 182 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 183 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 241 >gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 311 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/302 (19%), Positives = 114/302 (37%), Gaps = 14/302 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ +++ RL G GD + + + + + L IF+ K + + + + + Sbjct: 10 PMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLA 69 Query: 72 HI---IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + SF V + + +L++++L LG + P +R S Sbjct: 70 ELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSIL---LGGDPDIPPSPLDRPPS 126 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 +E +A+ + LN S + P + K+ R + I + Sbjct: 127 RIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPGDFKRFLVR--DGPGIRIAFS 184 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + V+ +P +LK + + + Q + F + + V + I Sbjct: 185 LGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQWKQR---FGEEVRRSTVQVTATIP 241 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L K L + LK GQV+ LS + ++ CE GR+G+NYT+RI R FD Sbjct: 242 LTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI--RQPFD 299 Query: 308 QK 309 + Sbjct: 300 DR 301 >gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] Length = 348 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 101/239 (42%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 105 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 164 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T+ S P D D + LS F T + +T Sbjct: 165 IANLLAGHLAGALDRVFNTS-SSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 221 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 222 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 277 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 278 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 336 >gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1] gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1] Length = 316 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 16/237 (6%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 +A ++ L++ +T S P ID + + L + T + +T Sbjct: 133 IANLLAGHLADALDRVFNTGS-SQPLFAPGDCIDTADFDRDNLELSRLFTCRIAVTAAGK 191 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRINL 248 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 192 TGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFMQQ 247 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 248 GSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513] gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 316 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMLLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3] gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3] Length = 342 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 19/255 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ID + + TL+DV+ K G VIP E IL Y C++G Sbjct: 246 LRDEIMDVDVGIDATVVEHQVTLRDVLEFKAGDVIPVELPEHI--ILKVEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRIN 305 + +N ++I ++I Sbjct: 304 KTKENLALKICEQIQ 318 >gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] Length = 400 Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 26/271 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V S W + + L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVDSTLIYSIIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 T ++ R +T+E L KR I VL+ + SP + ID L+ N Sbjct: 190 GNTQLRVEGRPYTTIETNLVKRLI---EVVLSDAEQAFRPLSPVR---FTIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 +R +N + + + + +E+ + L++P T+ ++ L+ + K Sbjct: 244 AAISRPANAAIL-VKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR------ 296 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP FA + Q V +D + LK ++ LK+G +P R + Sbjct: 297 DPVWEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAVRCGSTM 356 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 357 LTEGRMGRVGDRVAIRVTKNLRKPNTTLAMF 387 >gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 41/253 (16%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +I TS + + + S + + + A+ W S +L+ ++LE +LG T Sbjct: 54 EIELTSLEYMPYEDAMESIQSPSLIAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRAT 113 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQIS-AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL- 176 + R L+ +E+KL +R +A++S L QC+ Q+ SP +DI L+ N + Sbjct: 114 TQEWKPRGLTAIEQKLGRR-LAELSLKGLAQCL---QDVSPVQ---FDIQSLESNPRSVM 166 Query: 177 ---SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-- 231 + M+M E+ + L++P TL + S L PF Sbjct: 167 LAAPRTATVLVRMHMQFEDRSGHMALVLPYGTL--------------DEVSAQLAQPFLG 212 Query: 232 ARKTYQLNVNIDTRINLKKTT-------------LKDVVTLKIGQVIPFLHREKTCAILS 278 R N D + TT L +V+ K GQVI T + Sbjct: 213 GRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVGM 272 Query: 279 ANGKEIYSCELGR 291 N + ++ G+ Sbjct: 273 VNAQPMFQAAFGQ 285 >gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] Length = 341 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 74 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 133 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + DYL N ++ Sbjct: 134 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMDV-EFDYLDSEVNPAMA 185 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 186 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 244 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K + V +D I K+ +LKDV+ K G +IP E +L Y C+LG Sbjct: 245 LKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPE--YIVLRVEDLPTYRCKLG 302 Query: 291 RVGKNYTIRITDRI 304 R +N + I ++I Sbjct: 303 RSRENLALNIREKI 316 >gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] Length = 342 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + E DYL N ++ Sbjct: 135 HAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQ--------FDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ID I K TL++V+ K G VIP E IL Y C++G Sbjct: 246 LRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVELPEHI--ILKVEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 + N ++I ++I Sbjct: 304 KAKDNLALKICEKI 317 >gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] Length = 401 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F ++S V S W + ++L+ ++++ LLG Sbjct: 132 VEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRG 191 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 ++ ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 192 QSSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVS------FSIDRLETNPRFA 245 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 246 AITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------D 298 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Q + +D + + L+ ++TLK+G +P R + + Sbjct: 299 PIWESHLATEIAQAQIAVDAVLYEAEIPLRQLMTLKVGDTLPLEMRPDASVAVRCGSVTL 358 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 359 TEGRMGRVGDRVAIRVS 375 >gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28] gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90] Length = 316 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P + VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. 16M] gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. Rev.1] gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str. Ether] gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str. 16M] gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 316 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 22/240 (9%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P + VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 +A ++ L++ +T+ +P D D + LS F T + +T Sbjct: 133 IANLLAGHLAGALDRVFNTSSSQPLFAPG--DCIDTADFDRENFELSRLF--TCRIAVTA 188 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTR 245 L++P+ T + + +Q+ DP +A+K Q + ++ Sbjct: 189 AGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAF 244 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 245 MQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC2047] Length = 329 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 22/213 (10%) Query: 102 NLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 +LV+ L++ G H+ + R + E+++ ++ ++Q+ + Q T + Sbjct: 125 DLVVNLVDRFFGGGVHDN--AIGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMD----- 177 Query: 161 EDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 D +YL N +E V + IE + IP ++L+ +L Sbjct: 178 ---IDFEYLSNEENPAMIKAISPSEVVVLSTFEIKIEEKGGRIQVAIPY-SMLEPVREAL 233 Query: 215 SSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S + +N+ D + R +V I R+ +K TL++++ K G VIP E Sbjct: 234 DSGVQVDNEYTDGNWAEALQRDLRYASVPISCRVAERKITLREILNFKAGDVIPIDMPE- 292 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +IL ANG IY +G ++ ++I +I+ Sbjct: 293 -SSILMANGVPIYEAAVGASNEHLALKIKRQID 324 >gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] Length = 342 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-QFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ID I K TLK V+ K G VIP E IL Y C++G Sbjct: 246 LRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVELPEYI--ILKVEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R +N ++I ++I Sbjct: 304 RTKENLALKICEQI 317 >gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] Length = 317 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 11/220 (5%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 W S ++ LV +++E + GA +R +E+K++ +++ L+Q Sbjct: 92 WGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGMLEQKISALLAGHLASSLDQVF 151 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + ++ + D + S F I++ T L++P+ T Sbjct: 152 AANGQALFTAGECTDTAEFDRENFERSRLFACRIDV--TAAGKTGQVHLLLPRSTHKPMQ 209 Query: 211 LISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + NQ+ DP +A+K Q + ++ I TL + L+IGQV+ Sbjct: 210 DAVAAFLRRPMNQT----DPSWAKKMRQEVSRARIELEAFIQQGSMTLDALSMLEIGQVL 265 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L A ++++ C LG+ G ++T+++ D +N Sbjct: 266 KLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVN 305 >gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] Length = 401 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F ++S V S W + ++L+ ++++ LLG Sbjct: 132 VEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRG 191 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 192 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FSIDRLETNPRFA 245 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 246 AITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------D 298 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Q + +D + + LK ++ LK+G +P R + + Sbjct: 299 PIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMALKVGDTLPLDMRPDASVAVRCGSVTL 358 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 359 TEGRMGRVGDRVAIRVS 375 >gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 403 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/261 (19%), Positives = 109/261 (41%), Gaps = 26/261 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +FS ++S V S W + ++L+ ++++ LLG Sbjct: 133 NVEVSLDRITSVRFSDYMNSIPLPAVLSVFKAEEWENFGLATVDSSLIYSMIDVLLGGRR 192 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 193 GQTSMRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FKIDRLETNPRF 246 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 R +N + + +++ +E+ + L++P T+ ++ L+ + K Sbjct: 247 AAITRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMGEKFGR------ 299 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP A + Q +++D + + LK +++LK+G +P R + Sbjct: 300 DPIWEGHLATEITQAQISVDAVLYEAELPLKQLMSLKVGDTLPLEMRPDALVSVRCGSVI 359 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + +GRV IR+T ++ Sbjct: 360 LTEGRMGRVADRVAIRVTKQL 380 >gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] Length = 331 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 25/226 (11%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 W F L LLE+LLG + + L RSL+ +E + + TIA LN+ Sbjct: 116 WRGVFIF--KEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTF 173 Query: 151 STTQ---------ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 + + ESS L I+ + + + L+ FV T N N+ VL++ Sbjct: 174 APLEKIESSLVKIESSTRL-----INIVPGDASVLAAHFVVTGN------NLEDEIVLVL 222 Query: 202 PQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P L LK + S SE+Q ++ Q++V++ ++ T++D++ Sbjct: 223 PMAMLDPLKEKMRE-GSAVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNF 281 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K+G ++ + + A G+ + G +RI+ RIN Sbjct: 282 KVGDILDLGCAPSSPLQVRAAGQPKFQAIAGTHQGKKAVRISGRIN 327 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 122/289 (42%), Gaps = 36/289 (12%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + G L L + + M LD +++ + I+S + S Sbjct: 52 RTLELIHETYGRLVATSLSSLVRGSMRLD----FSAIDQVPYEEFINSLIPPAMIVIISW 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + N+ + L++ LLG S +P R+ + +E L + + + L + Sbjct: 108 ENTGLSMVLEMNLNITLALVDRLLGGS--GLPPPSPRAPTDIENALIAKLVDRHLVALEE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIP 202 T S + ++ TN +NE V I M++ I +++ L IP Sbjct: 166 AWRTVYPVS--------LTFVGTETNPEFAQIVPANEMVVLITMDIGIGDLSGIMSLAIP 217 Query: 203 QETLLKTTLISLSSQN-----KSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TL 253 +LL+ + LS+Q K+EN E YQ LNV ++ ++ L L Sbjct: 218 Y-SLLEPIVNHLSAQRFFVKKKAENDIE------REYVYQHVLNVMVNLQVCLGHMHIPL 270 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +D++ L++G + + + K+ + GRVGKN I+IT+ Sbjct: 271 RDLINLRVGDTLLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITE 319 >gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] Length = 342 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + + I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFNPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMD-VEFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 187 NIVSPTEVVVISSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 245 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K +NV +D + + TLKDV+ LK G +IP E IL + C+LG Sbjct: 246 LKDEIMDVNVGLDATVVEHQITLKDVMELKQGDIIPVELPEHI--ILRVEDLPTFRCKLG 303 Query: 291 RVGKNYTIRITDRI 304 + N +R+ +I Sbjct: 304 KARDNLALRVIQKI 317 >gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] Length = 400 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 26/271 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V S W + + L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVDSTLIYSIIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 T ++ R +T+E L KR I + A Q + ID L+ N Sbjct: 190 GNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVR------FTIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 +R +N + + + + +E+ + L++P T+ ++ L+ + K Sbjct: 244 AAISRPANAAIL-VKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMGEKFGR------ 296 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP FA + + V +D + LK ++ LK+G +P R + Sbjct: 297 DPVWEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAVRCGNTM 356 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 357 LTEGRMGRVGDRVAIRVTKNLRKPHTTLAMF 387 >gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] Length = 357 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 20/271 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + ++S Q KF +H+ + I LV L++N G Sbjct: 70 MRRNAEVSINGVQMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFG 129 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ I +L +ES + D + +YL Sbjct: 130 GDGRFQAKIEGREFTPTERRI-------IQLLLKTVFEDYKESWAPVMD-VEFEYLDSEV 181 Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 N ++N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 182 NPAMANIVSPTEVVVVSSFHIELDGGGGDFHITLPY-SMIEPIRELLDAGVQSDKQDTDM 240 Query: 228 IDPFARKTYQLNVNID--TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 A + ++V +D T + ++ TL+D++ +K G +IP E ++ + Sbjct: 241 RWAKALQDEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMPEHL--LVRIEDLPTF 298 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +LGR G N +RI +RI KS KN L Sbjct: 299 RGKLGRKGDNVAVRIEERIP-RPKSYKNELQ 328 >gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 400 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 52/258 (20%), Positives = 104/258 (40%), Gaps = 26/258 (10%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V S W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174 +T ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 190 GQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 R +N + + + + +E+ + L++P T+ ++ L+ + K Sbjct: 244 AAITRPANAAIL-VRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMGEKFGR------ 296 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP A + Q + +D + + LK ++TLK+G + R + Sbjct: 297 DPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMTLKVGDTLALEMRPDASVAVRCGSVT 356 Query: 284 IYSCELGRVGKNYTIRIT 301 + +GRVG IR++ Sbjct: 357 LTEGRMGRVGDRVAIRVS 374 >gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] Length = 375 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/273 (22%), Positives = 113/273 (41%), Gaps = 27/273 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++ S +S + S + F+ + + S +++ +++ LLG E Sbjct: 90 VEVKLISVDQLTYSEFVFSLENPTCFNLLESKGLEGHLILDLSPSIIFPIVDRLLGGGKE 149 Query: 118 TIPQLYNRSLSTVEKKLAKR-TIAQISAVLNQ----C---ISTTQ-ESSPNLEDFYDIDY 168 +IP + +R L+ +E +L R T+ I+ + N C + TQ ES+P L Sbjct: 150 SIPSIPSRPLTEIELQLVSRITLLVINGLENAWHNVCSLGLKVTQIESNPQLVQIVP--- 206 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228 NE + ++ +T+ V L IP T+ + LSS S Q + L Sbjct: 207 --------PNEVIVLVSFEITMGEVRGIMNLCIPFNTIEPLSG-KLSSDTWSAYQKKGL- 256 Query: 229 DPFARKTYQLNVN---IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP R + ++ + +NL T T +D+ L +G VI H ++ + G Sbjct: 257 DPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDVIMTEHPKEDGLEVVVEGCP 316 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + G V IR+T + + L+ L Sbjct: 317 MFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349 >gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] Length = 401 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 108/254 (42%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +FS ++S V W + ++L+ ++++ LLG Sbjct: 131 NVEVSLDRITSVRFSDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 190 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 191 GQAAIRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVA------FSIDRLETNPRF 244 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 245 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 302 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q ++++D + + L+ ++ L++G +P R + + Sbjct: 303 -GHLATEIGQADISVDAVLYEAEVPLRQLMALQVGDTLPLDLRADALVAVRCGSVTLTEG 361 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 362 RMGRVGDRVAIRVT 375 >gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] Length = 342 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 105/254 (41%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + +YL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMD-VEFEYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 233 RKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V + +N+ + TL+DV+ K G +IP E ++ G Y C++G Sbjct: 246 LRDEIMDVQVGFDVNVVEHEVTLRDVMGFKAGDIIPIDLPEHI--MMRIEGLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 + N ++I+++I Sbjct: 304 KSRDNLALKISEKI 317 >gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13] gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 316 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 73 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQK 132 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T S P D D + LS F T + +T Sbjct: 133 IANLLAGHLADALDRVFNTGS-SQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 189 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 190 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 245 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ A ++++ C LG+ G ++T+++ D +N Sbjct: 246 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVN 304 >gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 348 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 81 EVSINGVQMIKFGEYVHTLFVPTSLNMVKFSPLKGTGLITMEARLVFILVDNFFGGDGRF 140 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +E+ + D + +YL N ++ Sbjct: 141 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKEAWAPVMD-VEFEYLDSEVNPAMA 192 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D A Sbjct: 193 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDKRWSMA 251 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K + V ID I ++ LKDV+ + G +IP E +L Y C+LG Sbjct: 252 LKDEIMDIKVGIDATIVDQEIALKDVMKFRAGDIIPVDLPEHI--VLRVEDLPTYRCKLG 309 Query: 291 RVGKNYTIRITDRI 304 + N +RI ++I Sbjct: 310 KSRDNLALRIIEKI 323 >gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] Length = 348 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%) Query: 80 NFVFSQASL------SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 N +F +A++ W + ++ LV +++E + GA P +R VE+K Sbjct: 105 NDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQK 164 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLE--DFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +A ++ L++ +T S P D D + LS F T + +T Sbjct: 165 IANLLAGHLADALDRVFNTG-SSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAA 221 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQ----LNVNIDTRI 246 L++P+ T + + +Q+ DP +A+K Q + ++ + Sbjct: 222 GKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQA----DPAWAKKLRQEVSRARIELEAFM 277 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +L + L+IGQV+ A ++++ C LG+ G ++T+++ D +N Sbjct: 278 QQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVN 336 >gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] Length = 332 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/259 (16%), Positives = 99/259 (38%), Gaps = 28/259 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +H+ + I LV L++N G Sbjct: 76 DVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q+ L++ + D +Y+ N ++ Sbjct: 136 -AKIEGREFTPTELRVVQMVLEQVFVDLHEAWKAVK--------LIDFEYINSEVNPSMA 186 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ ++ + ++ P +L L Q+ ++ + + Sbjct: 187 NIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIREILDAGL-----QSDTDERDDR 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + V+++ + + TL+++V LK+G +IP E I +ANG ++ Sbjct: 242 WVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTMPE--VHIATANGVPMFQ 299 Query: 287 CELGRVGKNYTIRITDRIN 305 ++G+ N +RI D ++ Sbjct: 300 AKIGQCNNNLALRILDYVD 318 >gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] Length = 400 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 106/254 (41%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVA------FSIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q +++D + + LK ++ L++G +P R + + Sbjct: 302 -GHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPLDLRADALVAVRCGSVTLTEG 360 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 361 RMGRVGDRVAIRVT 374 >gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q ++++D + + L+ ++ L++G +P R + + Sbjct: 302 -GHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEG 360 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 361 RMGRVGDRVAIRVT 374 >gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1] Length = 335 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +V+I+ I TL ++ L++GQV+ L + K +Y C LG++G N++I Sbjct: 257 HVSIEAFIQQGSMTLDELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGKMGTNFSI 316 Query: 299 RITDRINFDQKSLKNFLH 316 R+TD I+ +++ + +H Sbjct: 317 RVTDPIDEEKEMIDELVH 334 >gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] Length = 400 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 107/254 (42%), Gaps = 18/254 (7%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +F ++S V W + ++L+ ++++ LLG Sbjct: 130 NVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRR 189 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT-- 173 + ++ R +T+E L KR + + A Q S + ID L+ N Sbjct: 190 GQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVS------FSIDRLETNPRF 243 Query: 174 ---NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK-SENQSEDL 227 +R +N + + +++ +E+ + L++P T+ ++ L+ + K +Q + Sbjct: 244 AAISRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWE- 301 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 A + Q ++++D + + L+ ++ L++G +P R + + Sbjct: 302 -GHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEG 360 Query: 288 ELGRVGKNYTIRIT 301 +GRVG IR+T Sbjct: 361 RMGRVGDRVAIRVT 374 >gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] Length = 331 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +I + Q KFS I + + I LV T+++N G + + Sbjct: 88 EIFISGIQVQKFSEYIQGLLVPTNLTIVRFNPLRGKALIVIDPRLVFTVVDNFFGGAGQF 147 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 Q R + E ++ + I I L + E D +Y+ N R + Sbjct: 148 YNQTEGREFTPTEMRVVRIIIDMIFKDLKEAWKPVME--------LDFEYVGAEINPRFA 199 Query: 178 N-----EFVTTINMNMTIE------NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N E + +++ +E N+A + ++ P LL + S S + Q+ Sbjct: 200 NIIGPGEIIVISTIHVELEGGGGDVNIAMPYAMLEPIRELLDA-ISSDSGEVDGGWQA-- 256 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + V+I++ + K T++DV+ LK G VIP + IL A G ++ Sbjct: 257 ---ALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIPIDMPD--TVILKAEGIPVFE 311 Query: 287 CELGRVGKNYTIRITDRI 304 ++G NY I+I D++ Sbjct: 312 GKVGISDGNYAIQIIDKV 329 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/255 (20%), Positives = 104/255 (40%), Gaps = 26/255 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S ++ + S N F+ SLS N ++ L++ LLG E Sbjct: 82 VEIEVVSVDQMTYAEFVLSLSNNVSFNVVSLSPLDGNAVFSLEPDIGFALIDRLLGGIGE 141 Query: 118 TIPQLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTT-----QESSPNLEDFYDIDY 168 + NR + +E+ + ++ + ++ + I + QESSPN+ Sbjct: 142 S--SNINRPFTDIEQSILLDVVRQAMEEMRSSWEPIIDISFEVVGQESSPNVVQIV---- 195 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---KSENQSE 225 +E V + + + +P +L+ L + + + +S+ +E Sbjct: 196 -------APSEIVVLVVFEVKLGETTGIINWCLPV-IVLEPVLNKIGTHDILARSKKATE 247 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 D I+ AR ++ V ++ R+ ++D ++LK G ++ + + NG E Y Sbjct: 248 DRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLLTLDKKVDDELPVFINGVEKY 307 Query: 286 SCELGRVGKNYTIRI 300 +LGR G N ++I Sbjct: 308 GVKLGRKGYNKAVKI 322 >gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] Length = 398 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 107/257 (41%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F+ ++S V + W + ++L+ ++++ LLG Sbjct: 129 VEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRG 188 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 189 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 242 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 243 AISRPANAAIL-VRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGR------D 295 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Q + +D + + LK +++L++G +P R + ++ Sbjct: 296 PIWEGHLATEIAQAELYVDAVLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSVRCGDVKL 355 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 356 SEGRMGRVGDRVAIRVS 372 >gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] Length = 333 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/262 (18%), Positives = 100/262 (38%), Gaps = 31/262 (11%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +H+ + I LV L++N G Sbjct: 76 DVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q+ L + + D +Y+ N ++ Sbjct: 136 -AKIEGREFTPTELRVVQMVLEQVFIDLKEAWKAVKA--------IDFEYINSEVNPSMA 186 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ ++ + ++ P +L L Q+ ++ + + Sbjct: 187 NIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIREVLDAGL-----QSDTDERDDR 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + V+++ + ++ TL+D+V L+ G +IP E IL+ANG ++ Sbjct: 242 WVRALQEDVMEARVDLEADLVRREVTLRDIVDLREGDIIPITMPEYN--ILTANGVPMFK 299 Query: 287 CELGRVGKNYTIRI---TDRIN 305 +LG++ N +RI DR N Sbjct: 300 TQLGQLNDNLAMRILGFVDRSN 321 >gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] Length = 335 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/291 (19%), Positives = 123/291 (42%), Gaps = 28/291 (9%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 KT+ I + G L +L + ++V + + +F ++ + N + + Sbjct: 53 KTLSIIYENYGRLLSSYLSGTLRSYCKVEV----LTIEEQRFFEYSNALESNVLMGVLDM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S ++ +++ LLG E +R + +E +L ++ + + ++ Sbjct: 109 KPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYEA--DRDYTDIEMQLLRQVVQTVCRLVGD 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL- 206 P DF ++ + + +S NE V + +++ I +V + IP L Sbjct: 167 AWENVYALQP---DFVRLENNSRQSQLVSPNETVVIVMLDVEIRDVVGNISFCIPYVILE 223 Query: 207 -----LKTTLISLSSQNKSENQS---EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 L T S++K+ ++ E+L+ RK Q+ + + + + TL + + Sbjct: 224 PVLEHLNTRYWFTESRSKTGDEQASRENLL----RKVRQIPIELRAVLGTARITLHEALQ 279 Query: 259 LKIGQVIPF-LHREKTCAILSANGKE-IYSCELGRVGKNYTIRITDRINFD 307 L++G V+P H ++ A+ S GKE + LG N IR+ DRI + Sbjct: 280 LQVGDVVPLDQHLDEKAAVYS--GKEKWFEGTLGTWHNNRAIRV-DRIMLE 327 >gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C] Length = 322 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V I+ I TL ++ TLK+GQ++P L + K +Y C LG++G +++IR Sbjct: 245 VRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIR 304 Query: 300 ITD 302 +T+ Sbjct: 305 VTN 307 >gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13] Length = 332 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 17/271 (6%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ + IS S + I S + + + ++ + + Sbjct: 63 FARLLTTYFSAQLRTYIQISVASVDQLPYEEFIRSIPKMTILNVFEVAPLEGRVVLEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + +L+ LG + ++ SL+ +E KL + T + P L Sbjct: 123 TIAYAMLDRQLGGKGTGVNKV--DSLTEIETKLMTTLFEGAIENFGEAWDTIADIQPFLS 180 Query: 162 DFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS- 216 D L+ N L NE V I+MN+TI V + IP +L+ + LS+ Sbjct: 181 D------LEVNPQFLQLVSPNETVIVISMNITIGEVTGMINICIPH-VVLEPVIPKLSAH 233 Query: 217 ---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + K++ + + I + + + T + + + D++ + IG V+P + Sbjct: 234 YWMEEKNKVRQDHEIATLEKAIRATALTVTTELGHSEISFSDLLNITIGDVLPLQQKIDE 293 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I+ + K + ++G+V KN ++I ++I Sbjct: 294 PIIVKVDNKPSFYGQVGQVKKNMAVQILEKI 324 >gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC BAA-1498] Length = 322 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V I+ I TL ++ TLK+GQ++P L + K +Y C LG++G +++IR Sbjct: 245 VRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIR 304 Query: 300 ITD 302 +T+ Sbjct: 305 VTN 307 >gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 404 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 26/261 (9%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S +FS + S V S W + + L+ ++++ LLG Sbjct: 134 NVEVSLDRITSVRFSDYMSSIPLPAVLSVFKAEEWENFGLATVDSALIYSMIDVLLGGRR 193 Query: 117 -ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN- 174 + ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 194 GQASMRVEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FKIDRLETNPRF 247 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 R +N + + +++ +E+ + L++P T+ ++ L+ + K Sbjct: 248 AAITRPANAAIL-VRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMGEKFGR------ 300 Query: 229 DP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 DP + + Q +++D + + LK ++ LK+G +P R + Sbjct: 301 DPIWEGHLSTEIAQAEISVDAVLYEAEIPLKQLMRLKVGDTLPLELRADALVAVRCGNVT 360 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + +GRV IR+T ++ Sbjct: 361 LTEGRMGRVADRVAIRVTKQL 381 >gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] Length = 331 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 11/246 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS Q ++S + F+ ++ N I C +L+ +++ L G + Sbjct: 78 EISVGPVQVQRYSAFLRELAVPTSFNIMAVRPLRGNGMIVCEPSLIFGVIDTLYGGIGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + IS + LE Y ++ ++ Sbjct: 138 QSRIEGRDFSATEQRIINRLVDVISDEYKKAWRGIYP----LELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + + I ++ + IP TL ++ L S S+Q S ++ R+ Sbjct: 194 PSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIRDVLYS-STQGDSMEVDRRWVNVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +V + + TT+++++ +K+G I + + A +S G ++ C+ G Sbjct: 253 IQAADVTLVAELARANTTVEELLAMKVGDFIELERQPRIEATIS--GVPVFECQYGTHNA 310 Query: 295 NYTIRI 300 Y IRI Sbjct: 311 KYAIRI 316 >gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] Length = 341 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 74 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 133 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 134 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 185 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 186 NIVSPTEVVVVSSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDTQDTDMRWSQA 244 Query: 233 RK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K ++V ID I + TLKDV+ K G VI E ++ Y C+LG Sbjct: 245 LKDEIMDVDVGIDATIVEHQVTLKDVMEFKQGDVITVELPEHI--VMRVEDLPTYRCKLG 302 Query: 291 RVGKNYTIRITDRI 304 N +RI + I Sbjct: 303 TARDNLALRICETI 316 >gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223] gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223] Length = 342 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D I + TLKDV+ K G +IP E ++ Y C++G Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 304 RSRDNLALKIHEKI 317 >gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175] gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175] Length = 342 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D I + TLKDV+ K G +IP E ++ Y C++G Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 304 RSRDNLALKIYEKI 317 >gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678] Length = 342 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 187 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D I + TLKDV+ K G +IP E ++ Y C++G Sbjct: 246 LHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 303 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 304 RSRDNLALKIHEKI 317 >gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] Length = 399 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 26/257 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH- 116 V++S S +F+ ++S V + W + ++L+ ++++ LLG Sbjct: 130 VEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRG 189 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 +T ++ R +T+E L KR + + A Q + + ID L+ N Sbjct: 190 QTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVT------FTIDRLETNPRFA 243 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ + L++P T+ ++ L+ + K D Sbjct: 244 AISRPANAAIL-VRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGR------D 296 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + + + +D + LK +++LK+G +P R + + Sbjct: 297 PIWEGHLATEIAKAEMYVDAVLYEADMPLKQLMSLKVGDTLPLDIRPDAMVSVRCGDVTL 356 Query: 285 YSCELGRVGKNYTIRIT 301 +GRVG IR++ Sbjct: 357 SEGRMGRVGDRVAIRVS 373 >gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3] Length = 322 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V+I+ I TL ++ TLK+GQ++P L + K +Y C LG++G +++IR Sbjct: 245 VHIEAFIQQGSMTLNELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKIGTSFSIR 304 Query: 300 ITD 302 +T+ Sbjct: 305 VTN 307 >gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] Length = 314 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + E SE+L D R +NV I+ R TL+D+ L++G V+ + + Sbjct: 220 RDERWSENLYDNIVRTEVAVNVKIEAR----GFTLEDIANLEVGDVLGLPIAPTSPIRIE 275 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + G+ ++ C LG+ +YT+R+ D + Q ++N L Sbjct: 276 SEGRTLFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312 >gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73] gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73] Length = 322 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V I+ I TL ++ LK+GQV+P + EK + S N K +Y C LG++G +++I Sbjct: 245 VRIEAFIQQGSMTLNELSILKVGQVLPLPANAEKQIRLRSGN-KSLYKCSLGKIGTSFSI 303 Query: 299 RITD 302 R+T+ Sbjct: 304 RVTN 307 >gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] Length = 374 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/259 (20%), Positives = 111/259 (42%), Gaps = 22/259 (8%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S + S +F ++S + + W + +NL+ ++++ LLG Sbjct: 92 NVEVSLDNVSSIRFGDYLNSIPLPAILAVFRAKQWDNYGMFTVDSNLIYSIVDVLLGGRR 151 Query: 117 ETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTN 174 T ++ R +T+E L +R I VL S + SP LE +D ++ N Sbjct: 152 GTAAMRIEGRPYTTIELNLVQR---MIEVVLQDVQSAFEPLSPVTLE----LDRMETNPR 204 Query: 175 ----RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLI 228 + + + +E+ L++P TL ++ L+ + E D I Sbjct: 205 FAAIARPANAAILVKLRVDMEDRGGRIELLLPYATLEPIRELLLQMF---MGEKFGRDTI 261 Query: 229 --DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIY 285 A + + V ++ ++ ++ +L++V+ ++GQ + L+ AI L G + Sbjct: 262 WESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTL-MLNSGPEGAIDLRCGGVRLG 320 Query: 286 SCELGRVGKNYTIRITDRI 304 ++GRVG + +R+ I Sbjct: 321 KGKMGRVGNHVAVRVEQAI 339 >gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] Length = 384 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 50/261 (19%), Positives = 111/261 (42%), Gaps = 26/261 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S + QS +F ++S + S W + + ++++ ++++ LLG Sbjct: 133 VEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYSIVDVLLGGRRG 192 Query: 118 TIP-QLYNRSLSTVEKKLAKR----TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 T ++ R +T+E+ L +R +A +SA + T + D L+ N Sbjct: 193 TAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVT----------FRFDRLETN 242 Query: 173 T-----NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSE 225 +R SN + + + +E+ ++IP TL ++ L+ + K S Sbjct: 243 PRFATISRPSNAAIVA-KLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDS- 300 Query: 226 DLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + + A + + V +D ++ L ++++++G I F + L + Sbjct: 301 -IWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQLRCGDVPM 359 Query: 285 YSCELGRVGKNYTIRITDRIN 305 + ++GR G+N IR+ + N Sbjct: 360 FDGKMGRKGQNIAIRVDSKHN 380 >gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] Length = 340 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +I P +L L Q+ S+ + + ++ Q NV +DT K LKD+ Sbjct: 217 YSMIEPIREMLDAGL-----QSDSDERDDRWVNSLREDIMQANVRLDTNFVQSKILLKDI 271 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 V LK G VIP E+ I +ANG ++ ++G+ N+ +++ + I Sbjct: 272 VDLKEGDVIPIELPEEY--ITNANGVPMFKVDIGQSNGNFALKVNEVI 317 >gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92] gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92] Length = 325 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 50/254 (19%), Positives = 99/254 (38%), Gaps = 20/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q K+ IH+ + ++ LV L++N G Sbjct: 80 DVTVGGVQVMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIMDAKLVFKLVDNFFGGDGRH 139 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E +L + + Q L + + +E S D+L N ++ Sbjct: 140 A-KIEGREFTPTETRLIHKALEQFFLDLEEAWNPVKELS--------FDHLGHEMNPAMA 190 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP 230 N E V + +E + F + +P L ++ L+S Q+ + + E Sbjct: 191 NVINPTEVVVVSTFQVDLEGGSGEFHVAMPYSMLEPIRDLLVS-GFQSGEDEKDERWQVA 249 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 R + ++ + ++ TL+DVV L+ G +IP E L AN +Y+C +G Sbjct: 250 LQRDILMAGLPLEMTLAQQEMTLRDVVDLQAGDIIPIELPETFE--LKANKVPVYNCTMG 307 Query: 291 RVGKNYTIRITDRI 304 N +++ ++I Sbjct: 308 VSRGNLAVKVVNQI 321 >gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] Length = 281 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 51 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 103 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 104 --VEFEYLDSEVNPSMANIVSPTEVIVVCSFHIEVDGGGGDFHMVMPY-SMVEPIRELLD 160 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V I+ R+NL + L+D++ L++G +IP E Sbjct: 161 AGVQSDKMETDVRWSSALRDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMPEH- 219 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 AI+ Y ++GR G ++I+ +I Sbjct: 220 -AIMFVEELPTYRVKMGRSGDKLAVQISQKI 249 >gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] Length = 347 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 20/208 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G + + R + E+++ +R + + + S + S LE Sbjct: 121 NLVFMVVDNLFGGDGRFLTKSEGREFTNTEQRIIQRMLR----LAIEAYSDSWRSVYPLE 176 Query: 162 DFYDIDYLK-------KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 I +L+ N NE V N N+ + N+ASSF + +P + L+ LI Sbjct: 177 ----ISFLRSEMQAKFANITNSPNEIVVNTNFNLEVGNLASSFQICMPYSMIEPLRDLLI 232 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S + ++Q A + V + + + DV L++G ++P E Sbjct: 233 NPLS-DGHQDQDSTWTRRMAGEIRHSTVELVADFADLPSRIADVTALEVGDILPLELPET 291 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300 A +G + CE G +R+ Sbjct: 292 VTA--KVDGVPVMECEYGSQHGQRALRV 317 >gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586] gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586] Length = 349 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200] Length = 343 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 48/254 (18%), Positives = 99/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + S I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDACVVEHELTLKDVMNFKAGDIIPVELPEYI--MMKIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] Length = 349 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603] Length = 349 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMMEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 269 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 3/166 (1%) Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S SG+F + ++ N V W + +G + + T++E L G+ P Sbjct: 82 SLNGIASGRFGEFLDAYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPP 141 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R+ S +E ++A+ Q+ L ++ LE + R SN+ Sbjct: 142 VEDERNFSAIELRIAQMVFEQVGKALESSFGLVSQTPFRLERM-ETRMEFAVIGRRSNKA 200 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 V + + N L+IPQ T+L +LS E+ + D Sbjct: 201 VQAKFLLQAL-NRGGEMFLVIPQ-TVLNPLRPALSKVLTGESAARD 244 >gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans] gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] Length = 332 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/206 (19%), Positives = 83/206 (40%), Gaps = 17/206 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV L++NL G ++ R + E+++ +R I ++ + + + E +E Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQR----ILGIIFETYAKSWEPVYPVE 175 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214 +Y++ N NE V + + V+ +P + L++ Sbjct: 176 ----FEYIRSEMNTQFANIATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTS 231 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S Q ++ + I ++ V I + K TL D++ +KIG +I E+ Sbjct: 232 SMQGETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPEQVT 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 A +G + C G++ Y +R+ Sbjct: 292 A--EVDGVPVMECSYGKLNGQYALRV 315 >gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] Length = 349 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEDLPTYRVKMGRSGEKLAVQVSEKI 319 >gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] Length = 332 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 18/252 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF IH+ + + LV L++N G Sbjct: 76 DVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VLNQ +E+ + + +YL N ++ Sbjct: 136 -AKIEGREFTPTETRI-------VQMVLNQVFHDMKEAWHAVLQV-EFEYLSSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ +P + ++ Q+ ++ E ++ Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNAL 246 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++NV I+T + ++ +L+D+ +K G VIP E ++ANG IY LG Sbjct: 247 QEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVEIPEHLT--VTANGIPIYKATLGT 304 Query: 292 VGKNYTIRITDR 303 +RI DR Sbjct: 305 RDGKLALRIHDR 316 >gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4] Length = 349 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] Length = 300 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 21/255 (8%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF ++ + + LV L+EN G Sbjct: 28 EVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 87 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ I +L + +E+ SP + + +YL N + Sbjct: 88 HARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG--VEFEYLDSEVNPSM 138 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E + + ++ ++ F +++P ++++ L + +S+ D+ Sbjct: 139 ANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLDAGVQSDKMETDVRWST 197 Query: 232 ARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ R+NL + L+D++ L++G VIP E A++ Y ++ Sbjct: 198 ALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH--AVMFVEELPTYRVKM 255 Query: 290 GRVGKNYTIRITDRI 304 GR G+ ++++++I Sbjct: 256 GRSGEKLAVQVSEKI 270 >gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341] gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341] Length = 349 Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 108/255 (42%), Gaps = 21/255 (8%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF ++ + + LV L+EN G Sbjct: 77 EVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 136 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ I +L + +E+ SP + + +YL N + Sbjct: 137 HARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG--VEFEYLDSEVNPSM 187 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E + + ++ ++ F +++P ++++ L + +S+ D+ Sbjct: 188 ANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLDAGVQSDKMETDVRWST 246 Query: 232 ARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ R+NL + L+D++ L++G VIP E A++ Y ++ Sbjct: 247 ALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH--AVMFVEELPTYRVKM 304 Query: 290 GRVGKNYTIRITDRI 304 GR G+ ++++++I Sbjct: 305 GRSGEKLAVQVSEKI 319 >gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771] Length = 47 Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 29/40 (72%) Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++ Sbjct: 8 VSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47 >gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust. Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 15/224 (6%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQL----YNRSLSTVEKKLAKRTIAQISAVL 146 W ++ LV +++E + GA + +R +E+K++ ++ L Sbjct: 92 WGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKISALLAGHLAKSL 151 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 +Q + ++ + D + S F I++ T L++P+ T Sbjct: 152 DQVFAGNGQTLFAAGECIDTAEFDRENFERSRLFACRIDV--TAAGKTGRVHLLLPRSTH 209 Query: 207 LKTTLISLSSQNKSENQSEDLIDP-FARK----TYQLNVNIDTRINLKKTTLKDVVTLKI 261 + + NQ+ DP +A+K + + ++ I TL + L+I Sbjct: 210 KPMQDAVAAFLRRPMNQA----DPSWAKKMRHEVSRARIELEAFIQQGSMTLDALSMLEI 265 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 GQV+ L A ++++ C LG+ G ++T+++ D +N Sbjct: 266 GQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVN 309 >gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] Length = 343 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] Length = 343 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMKIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1] gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1] Length = 343 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRF 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDP 230 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ Sbjct: 188 NIVSPTEVVVINSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 246 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V D + + TLKDV+ K G +IP E ++ Y C++G Sbjct: 247 LHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE--YIMMRIEDLPTYRCKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++I ++I Sbjct: 305 RSRDNLALKIYEKI 318 >gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] Length = 349 Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust. Identities = 42/211 (19%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L + +E+ SP + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFADYKEAWSPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 231 AGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A++ Y ++GR G+ ++++++I Sbjct: 290 -AVMFIEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1] gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1] Length = 332 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 53/269 (19%), Positives = 106/269 (39%), Gaps = 13/269 (4%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V I+ S F + S + + + + + + + Sbjct: 63 FARILTTYFSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFDVPPLDGHILMEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ +++ ++G I ++ N L+ +E K+ + L S E P L Sbjct: 123 NIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLRDAWSNIAEIDPMLS 180 Query: 162 DF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +F + +L+ + NE V I+MN TI + +IIP +L+ + LS Sbjct: 181 EFEVNPQFLQMVS---PNETVVVISMNTTIGETSGMINIIIPH-VVLEPIIPKLSVSYWM 236 Query: 221 ENQSEDLIDP-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + +++D IDP ++ V I + T+ D + L IG VI R Sbjct: 237 QTKNKD-IDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDVIQLNKRIDAPL 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + ++ + G + K ++I D + Sbjct: 296 TIKVGEIPKFTAQPGELNKRLAVQILDSL 324 >gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] Length = 339 Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust. Identities = 47/256 (18%), Positives = 97/256 (37%), Gaps = 22/256 (8%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +H+ + I LV L++N G Sbjct: 76 DVSVGGVQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIILDARLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT---------QESSPNLEDFYDIDYL 169 ++ R + E ++ + + Q L + E +P+L + + Sbjct: 136 -AKIEGREFTPTELRVVQMVLNQAFVDLGEAWKAVFPVSFEYVHSEVNPSLANI-----V 189 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229 + + + F ++ ++ + +I P +L L Q+ SE Q E + Sbjct: 190 SPSEVVVVSTFHIELDGGGGEMHITVPYSMIEPIREVLDAGL-----QSDSEEQDERWVR 244 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 V+++ + + TL+D+V LK G +IP + +++ANG ++ +L Sbjct: 245 ALREDVLAAKVDLECDVVRRDITLRDIVDLKEGDIIPVEFPD--YHVVTANGVPMFRTQL 302 Query: 290 GRVGKNYTIRITDRIN 305 G+ N ++I + I+ Sbjct: 303 GQHNDNLALKILEFID 318 >gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 352 Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust. Identities = 42/254 (16%), Positives = 94/254 (37%), Gaps = 17/254 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++S Q KF +H+ + + LV L+EN G Sbjct: 81 AEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGR 140 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ + + I + + D +YL N + Sbjct: 141 YHAKIEGREFTPTERRIIQMLLKIIFEDYKDAWAPVMTA--------DFEYLDSEVNPAM 192 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDP 230 +N E + + ++ ++ F + +P L L+ Q+ E+ + Sbjct: 193 ANIVSPTEVIVVNSFHIELDGGGGDFHIAMPYSMLEPIRELLDAGVQSDKEDTDQRWSQA 252 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V + ++ K+ L+D++ +G +IP E+ ++ G + +LG Sbjct: 253 LEDEIMDVDVYLTAKLLEKQLPLRDMINWSVGDIIPVELPEEL--LVCVEGLPSFHAKLG 310 Query: 291 RVGKNYTIRITDRI 304 + N ++I DRI Sbjct: 311 KSNDNLALKIIDRI 324 >gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum JL354] Length = 339 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 14/258 (5%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 +++S S +F ++ + + + +W + NL+ +++ LLG Sbjct: 87 IEVSLDDIASVRFGDFMNRVPLPCMIAVFKVPAWQDYGLVTIEANLIYAVVDALLGGRKG 146 Query: 118 TIPQ-LYNRSLSTVEKKLAKRTIA----QISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 P+ + R+ +T+E L + I + S T E +E + Sbjct: 147 AAPRKIEGRAFTTIETTLVSKMIELVLREFSTAFEPIAPITMELE-RIETSPRFAAIAGP 205 Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDP 230 TN S T ++M + +F +++P TL + LS + E D D Sbjct: 206 TNVAS---AATFAVDM--DGRGGNFTILLPFATL-EPVRGKLSQRFMGEKLGGDNTWRDH 259 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + V I T + ++ L DV +L+IGQ IPF + G + ++G Sbjct: 260 MRNEILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQIG 319 Query: 291 RVGKNYTIRITDRINFDQ 308 R + I I D I Q Sbjct: 320 RQRNHVAIGIVDTIKQGQ 337 >gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893] gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893] Length = 332 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 18/252 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF IH+ + + LV L++N G Sbjct: 76 DVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+Q +E+ + D +YL N ++ Sbjct: 136 -AKIEGREFTPTETRI-------VQMVLDQVFHDMREAWHAVLKV-DFEYLSSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++ E + Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGELHMALPYSMIEPIRDVLDAGVQSDIDDVDERWVSAL 246 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +NV I+T + ++ +L+D+ LK G +IP E L+ANG +Y +G Sbjct: 247 QEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVEIPE--LLTLTANGIPVYKATMGT 304 Query: 292 VGKNYTIRITDR 303 +RI DR Sbjct: 305 RDGKLALRIHDR 316 >gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 16/255 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S + S +F ++S + + W + + ++L+ ++++ LLG Sbjct: 134 VEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNYGLLTVDSSLIYSIVDVLLGGRRG 193 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T ++ R +T+E+ L +R + VL+ + SP + D L+ N Sbjct: 194 TAAMRIEGRPYTTIERNLVER---MVHVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 247 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R SN + + + +E+ L++P TL ++ L+ + K S Sbjct: 248 TISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSI-WET 305 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + V ++ ++ + L+DV+ K+G I + + L ++ + Sbjct: 306 HLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKILLNAQPNSPIDLRCGDVSMFRGRM 365 Query: 290 GRVGKNYTIRITDRI 304 GR G + IR+ D+I Sbjct: 366 GRKGPHIAIRVDDKI 380 >gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis HTE831] gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 330 Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 Y + L F ++ V+IS TS + I S + + + + N + + Sbjct: 62 YARMLTTFFATQLRSYVNISVTSVDQVPYEEFIRSIPKKTILNLYGMEPLDGNLIMEINP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ LL+ LLG TI + + +L+ +EK L + + L S+ E P LE Sbjct: 122 NIAYALLDRLLGGKGSTITK--DGNLTEIEKTLFMQMFEKAEDALRDAWSSVVEIEPVLE 179 Query: 162 DF 163 +F Sbjct: 180 EF 181 >gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] Length = 323 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 58/285 (20%), Positives = 116/285 (40%), Gaps = 22/285 (7%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ I + G L FL + + + + S + + I S + + S+ Sbjct: 52 RTLYMIHENYGRLVANFLSAYLRASIQVKI----VSVEQMTYEDFILSLPTPTLMNVFSM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N + +++ L G E + + NR L+ +E + +R +++ L+ Sbjct: 108 EPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLSY 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLL 207 S Q +P LE +++ + T +S NE V I M T+ L +P LL Sbjct: 166 SWSDIQNITPKLE---NMETNPQFTQAISPNETVAVITMGTTVGKYEGLLNLCLPY-MLL 221 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVTLKIG 262 + + LS+ + E P R ++ V + I + ++D + L++G Sbjct: 222 EPVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVG 281 Query: 263 QVIPFLHREKTCA---ILSANGKEIYSCELGRVGKNYTIRITDRI 304 VI EKT L +G + + G V K +++T+ + Sbjct: 282 DVITL---EKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323 >gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] Length = 368 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 33/226 (14%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFS-----QASLSSWSSNFFIGCSNNLVITLLENLLG 113 DI+ + ++ ++SF EN + +S I + L++TL+ ++LG Sbjct: 82 DITVMELRESRYYEYVNSFHENDCMTIIDTVMPEKGKFSVPMMIYVTPGLILTLMSHMLG 141 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY----L 169 + I N S VE L KR + I L S ++ +D+ + Sbjct: 142 GGEQVISTEENYRYSDVEMSLYKRILEYIIHALGDGFS----------NYLTVDFRPQKV 191 Query: 170 KKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK------ 219 ++N + + +E V +++N+ + +AS + I TLL+ ++ ++ Sbjct: 192 EENPSMIQEVGLDETVVLVHLNVDVTGIASEKIRICIPGTLLEQIFRTIDNRKHIARGFT 251 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 N SE ++ + L + T + T++D+ L++G VI Sbjct: 252 YSNNSEVIMSHLKETKFPLTAQLGT----VRLTMEDLYRLQVGDVI 293 >gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus C3-41] gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41] Length = 331 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 15/268 (5%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V I+ S F + S + + + N + + Sbjct: 63 FARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEVPPLDGNILMEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ ++L+ ++G S + + N L+ +E K+ + L + E P L Sbjct: 123 NIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLREAWENVAEIDPILV 180 Query: 162 DFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLISL 214 + L+ N L NE V I++N I + + IP E ++ + Sbjct: 181 E------LEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLEPIVPNLSVRY 234 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 Q ++ S + + Q + + + L T++D +T++IG VI + Sbjct: 235 WMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDVIQLEQKINDP 294 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 +L ++ + G+ GK I+I D Sbjct: 295 LLLKVGTLPKFTVQPGKQGKKLAIQIID 322 >gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] Length = 365 Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust. Identities = 57/272 (20%), Positives = 118/272 (43%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGVIEINPSIAFPMLDRLLGGKGE 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P +R S +E L +L +ST +E+ P +E + I+ + + N + Sbjct: 140 --PFDASREFSDIELSL-------FETILRVMMSTLKEAWGPVMEIYPTIESKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + + +I E +L + +++ +S KS N Sbjct: 191 QIVAQNEIVVMVVMEIIIGHSSGMMNICYPVISLEPILPKLASRDLMLNETSSKKSRNTE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ A+ VN++ + + T++DV+ L+IG V+ +S +GKE Sbjct: 251 LQVLLGGAK------VNVEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKER 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + ++G +I+I++ I+ ++ ++K L Sbjct: 305 FRGQIGLRRFRKSIQISEIIDTEKDAVKRALE 336 >gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 409 Score = 42.4 bits (98), Expect = 0.088, Method: Compositional matrix adjust. Identities = 49/270 (18%), Positives = 109/270 (40%), Gaps = 26/270 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S + +F ++S + W + ++L+ ++++ LLG Sbjct: 142 VEVSLDSMTNVRFGDYLNSIPLPAILGVFKAKEWDGFGLVTVESSLIYSIIDVLLGGGRG 201 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 + P ++ R +T+E L +R I I + Q P + ++ L+ N Sbjct: 202 SSPTRVEGRPYTTIESNLVRRMIEII------LLDAEQAFGPLSPVSFPLERLETNPRFA 255 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ +++P TL ++ L+ + K D Sbjct: 256 AISRPANAAI-MVELRIDMEDRGGKVEIVLPYATLEPIRDLLLQMFMGEKFGR------D 308 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 P A + Y V +D + L+ V+ L++GQ + F + + G ++ Sbjct: 309 PIWEEHLATEVYSSEVQVDAVLYENTIPLQRVLNLEVGQTLLFDTGPRDPVQVKCGGVQL 368 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +G V +I I+ ++ + +L F Sbjct: 369 TEGLMGHVDDRISIEISKKLKQPKMTLAAF 398 >gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] Length = 363 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/266 (19%), Positives = 104/266 (39%), Gaps = 20/266 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF IH+ + I LV L++N G Sbjct: 78 EVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + + S +YL N ++ Sbjct: 138 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 189 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++L+ L + +S+ + DL A Sbjct: 190 NIVSPTEVVVISSFHIELDGGGGDFHIALPY-SMLEPIRELLDAGVQSDTEDTDLRWSKA 248 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V +D L + TLK ++ LK G +IP E + + ++G Sbjct: 249 LRDEIMDVEVDMSTQLLEVDLTLKQIMELKAGDIIPVEMPEHITVFVEE--LPTFRAKMG 306 Query: 291 RVGKNYTIRITDRINFDQKSLKNFLH 316 R N ++I+++I S+K+ LH Sbjct: 307 RSRDNVALQISEKIK-RPDSVKSELH 331 >gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619] gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619] Length = 322 Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/253 (18%), Positives = 95/253 (37%), Gaps = 18/253 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+QC +E+ + + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFIDLKEAWQAIMPV-NFEYMNSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++V + + ++ L+DV+ ++ G VIP E +L ANG + LG Sbjct: 249 REDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVELPEHL--VLRANGVPSFKARLGS 306 Query: 292 VGKNYTIRITDRI 304 N ++I D I Sbjct: 307 HKGNLALQIIDPI 319 >gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1] gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1] Length = 349 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I ++ +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLMKTVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL K +L+D++ L+ G +IP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEKDVSLRDLMELQAGDIIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + + ++GR G+ ++I+++I Sbjct: 284 IDMPEN--ATMFVEELPTFRVKMGRTGEKVAVQISEKI 319 >gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] Length = 334 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 25/254 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+IS + K+S I + + + + +LV +++NL G Sbjct: 77 VEISVGPVRVSKYSEFIRNLVVPTNLNLVQFKPLRGTALMIFNPDLVFLMVDNLFGGDGR 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY--LKKNTN- 174 ++ R + E ++ +R +LN +S E Y I++ ++ N Sbjct: 137 FHTRVEGRDFTQTEHRIIQR-------ILNIVFEAYGKS---WEPVYPIEFEFIRSEMNT 186 Query: 175 -----RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--L 227 NE V + + + ++ +P ++++ L+S ++EN D Sbjct: 187 QFANIATPNEVVVAVTFAIELGQISGEMHFCMPY-SMIEPIKDLLTSSLQAENLEVDKRW 245 Query: 228 IDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 I R+ QL V I + + +L+D+V LK+G VIP A +G + Sbjct: 246 IR-LMRQQIQLAEVEIVADLGTAEVSLRDIVNLKVGDVIPLDIPPTIEA--KVDGVPVME 302 Query: 287 CELGRVGKNYTIRI 300 C G+ YT+R+ Sbjct: 303 CAYGKFNGQYTLRV 316 >gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7] Length = 322 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELGDSLVLRANGVPSFKVKLG 305 >gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] Length = 352 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P R S +E L + +L Q + +E+ +P E F ++D + + N + Sbjct: 140 --PYESTREFSDIELNL-------LDTILRQMMQNLKEAWAPITEIFPNVDVKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + L +I E++L + ++S +S KS N+ Sbjct: 191 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A+ VN+ + K TL++++ L++G ++ I++ +G+E Sbjct: 251 LQALLGGAK------VNVAAILGETKLTLREILDLEVGDIMRLDRPADDTVIINVDGREK 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + +G TI I + I ++ +K L Sbjct: 305 FLASIGLHRYRKTIEIKEMIKTEKDQVKEILE 336 >gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp. salmonicida A449] gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 356 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/254 (18%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMDV-GFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ LK G +IP E ++ + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETDLTLRELMELKPGDIIPVEMPENL--LVYVEDLPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] Length = 329 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 56/289 (19%), Positives = 112/289 (38%), Gaps = 42/289 (14%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V S S + + IHS + + + F I + Sbjct: 62 FTRMLTTFFSAQLRTYVQFSVNSVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEVNP 121 Query: 102 NLVITLLENLLGA--------------SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 N+ +L+ LLG + QLY R+ ST A +IA+I A ++ Sbjct: 122 NISYAMLDRLLGGPGVEMDKIESFTEIEMRILTQLYKRAFSTYGD--AWESIAEIKAEMS 179 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E +P NE V I++ +TI V+ + + +P T + Sbjct: 180 AV-----EVNPQFLQLVS-----------PNETVVLISIGVTIGEVSGTINVCLPFVT-I 222 Query: 208 KTTLISLSS-----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + L LSS + N S+ +P + V + + + T D++ L++G Sbjct: 223 EPVLSKLSSHYWMQEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVG 282 Query: 263 QVIPF--LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + L +E ++ N +++ ++G GK +++ R+ +++ Sbjct: 283 DCLALDQLAKEPLSVMVGEN--KVFKGQVGVSGKRMAVQVLHRVKEEEQ 329 >gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 322 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-- 176 ++ R + E ++ + + Q L + E + +Y+ N + Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPVMA 188 Query: 177 ----SNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 +E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDTLVLRANGVPSFKVKLG 305 >gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] Length = 347 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G VIP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++GR G+ ++I+++I Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319 >gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 2250] gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. B076] gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori str. 301020] gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 322 Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/239 (17%), Positives = 89/239 (37%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E I+ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP E ++ ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSE--SLVMRANGVPSFKVKLG 305 >gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] Length = 349 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/218 (18%), Positives = 99/218 (45%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRI-------VQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R++L + +L+D++ L+ G +IP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVDLLEQDISLRDLMELQPGDIIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A++ + ++GR G+N ++++++I Sbjct: 284 VTMPEH--AVMFVEELPTFRVKMGRSGENLAVQVSEKI 319 >gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVLRANGVPSFKVKLG 305 >gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 347 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G VIP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++GR G+ ++I+++I Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319 >gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] Length = 308 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 16/218 (7%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYN----RSLSTVEKKLAKRTIAQISAVLNQ 148 S + +N + L+ LLG P L R L+ +E L + + A + Sbjct: 94 STALLQIPSNTTMLWLDYLLGG-----PGLERQENPRELTEIETALFRSLLDSSLADMRY 148 Query: 149 CISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S+ +P + Y+ +++ ++E V N ++T+ + S+ ++ + LL Sbjct: 149 AFSSITPMNPKIRGLQYNPQFVQAVP---ASEAVLVANYSLTVGDRVSAATMMFAADALL 205 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDVVTLKIGQV 264 + + S Q E+ F R +N V++ R N +D++ + +G V Sbjct: 206 NPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDV 265 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I H + G+ I G GK +++TD Sbjct: 266 IELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTD 303 >gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila] Length = 356 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 103/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMDV-GFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E ++ + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETDLTLRELMELRPGDIIPVEMPENL--LVYVEDLPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R +N ++ITD++ Sbjct: 305 RTKENVALKITDKL 318 >gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] Length = 349 Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 98/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRI-------VQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G +IP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + + ++GR G+N ++++++I Sbjct: 284 ITMPEH--ATMFVEELPTFRVKMGRSGENLAVQVSEKI 319 >gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32] gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32] Length = 347 Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/218 (20%), Positives = 97/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ I +L +E Sbjct: 114 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------IQLLLKIVFEDYKE 166 Query: 156 S-SPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 167 AWSPVMG--VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R+NL + +L+D++ L+ G VIP Sbjct: 224 PIRELLDAGVQSDKMETDVRWSSALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIP 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++GR G+ ++I+++I Sbjct: 284 MNMPEH--ATMFVEELPTYRVKMGRSGEKLAVQISEKI 319 >gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida] gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1] Length = 322 Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust. Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 18/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+QC +E+ + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFVDLKEAWQAIMPV-SFEYMNSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + ++ L+D++ ++ G VIP E +L ANG + LG Sbjct: 249 REDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHL--VLRANGVPAFKARLGS 306 Query: 292 VGKNYTIRITDRIN 305 N ++I D I Sbjct: 307 HKGNLALQIIDPIE 320 >gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198] Length = 357 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 112/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++V ++++ LLG E Sbjct: 79 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINPSIVFSMIDRLLGGKGE 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 T + R S +E L + +L Q + T +++ P E F +D + + N + Sbjct: 139 TYD--HQREFSDIELNL-------LDTILRQIMQTLKDAWGPVAEIFPSVDAKESSPNVV 189 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M M I + + L +I E +L + ++S +S KS N+ Sbjct: 190 QIVAQNEVVIMVVMEMIIGHSSGMLSLCYPVISLEAVLSRLGSRDLVLSETSSKKSRNKE 249 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A +++ + +L++++ L+ G +I ++ +GK+ Sbjct: 250 LQALIGGA------GISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVAIDGKDK 303 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + ++G TIRI + I ++ +K L Sbjct: 304 FLADIGLQRYRKTIRIKEAIRTEKDQVKEILE 335 >gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] Length = 322 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 45/254 (17%), Positives = 93/254 (36%), Gaps = 18/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+QC +E+ + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQCFVDLKEAWQAIMPV-SFEYMNSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V + + ++ L+D++ ++ G VIP E +L ANG + LG Sbjct: 249 REDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEHL--VLRANGVPAFKARLGS 306 Query: 292 VGKNYTIRITDRIN 305 N ++I D I Sbjct: 307 HKGNLALQIIDPIE 320 >gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum SL003B-26A1] Length = 411 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 49/266 (18%), Positives = 106/266 (39%), Gaps = 16/266 (6%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V++S S S +F ++S + W + ++L+ ++++ LLG Sbjct: 143 NVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVESSLIYSIIDVLLGGGR 202 Query: 117 ETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 T ++ R +T+E L +R + I A Q + NLE + + +R Sbjct: 203 GTTAVRVEGRPYTTIETNLVRRMVEIILADAEQAFAPLSPVHFNLERL-ETNPRFAAISR 261 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP--- 230 +N + + + + +E+ + +++P TL ++ L+ + K DP Sbjct: 262 PANAAI-LVELRIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMGEKFGR------DPIWE 314 Query: 231 --FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 A + + + +D + L V++L +GQ + F + + Sbjct: 315 GHLASEIHAAEIEVDAVLYETHLPLGRVLSLDVGQTLIFDVDPHDPITIKCGNVPLTEGT 374 Query: 289 LGRVGKNYTIRITDRINFDQKSLKNF 314 LG+V + IR+T + + +L F Sbjct: 375 LGKVEDSIAIRVTRGLRRPKMTLAAF 400 >gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] Length = 395 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 22/216 (10%) Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S L +TL+ ++LG S I + + VE L KR + I L S + Sbjct: 138 SPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIVHALGDGFSNYISAE-- 195 Query: 160 LEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + I ++ N + + +E V MN+ I +A + I TLL+ + Sbjct: 196 ----FKIAKIETNPSMVQEVGLDETVVLAVMNVDISGLAMERIRICLPGTLLEHMFKIID 251 Query: 216 SQN------KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 ++ EN + +++ ++ + ++ + K ++D+ LK+G VI L+ Sbjct: 252 NRKHLARGFAYENNQDTIMEHLKASSFPMT----GQLGVVKLDIEDLYHLKVGDVID-LN 306 Query: 270 REKTCAI-LSANGKEIYSCELGRVGKNYTIRITDRI 304 + K A+ L + ++ ++G KN IRI DRI Sbjct: 307 KAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRI 342 >gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 40.8 bits (94), Expect = 0.23, Method: Compositional matrix adjust. Identities = 56/287 (19%), Positives = 117/287 (40%), Gaps = 19/287 (6%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ + ++V + ++ +S ++ + ++ Sbjct: 52 RTLEIIFEHYGRLLSTNLPVYLRKTVQVEV----MNSEAVTYSEFTNALSNPVLLGLVNV 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S S + I ++NL +++ +LG + + R S +E + +R ++L + Sbjct: 108 SPLSGSIIIELADNLGYAIVDRMLGGLGTPLDK--PRDFSEIELLILERIYNVCVSLLPE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 S+ E SP LE + + E + + +++ I +V + +P TL Sbjct: 166 PWSSVCEISPRLERIETNSQFAQIIS--PTEMIALVTLHIKIGDVEGLMNICLPYLTLES 223 Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L T + Q + Q D I+ K + + + ++ D V L++G Sbjct: 224 VMDKLNTKFWYSNLQEHDDKQYTDAIEALISKA---KIPVKAVLGNSTISVDDFVNLQVG 280 Query: 263 QVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +I + I N K+ ++ G VG NY +R+T + +Q Sbjct: 281 DIIRLDSGVNQDLNIFVGNIKK-FTALPGAVGDNYAVRVTSVVREEQ 326 >gi|269114813|ref|YP_003302576.1| 1-acyl-SN-glycerol-3-phosphate acyltransferase [Mycoplasma hominis] gi|268322438|emb|CAX37173.1| 1-acyl-SN-glycerol-3-phosphate acyltransferase [Mycoplasma hominis ATCC 23114] Length = 269 Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 18/145 (12%) Query: 160 LEDFYDI----DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + D+Y + D+L++ +N + N F ++N+ ENV + LIIP + LI S Sbjct: 31 MPDYYKVVEKNDFLQQKSNAILNHFNISVNVE-GFENVPNGPCLIIPNHSTYLDPLIMWS 89 Query: 216 S--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD-------VVTLK-IGQVI 265 + ++ ++ L++ ARK + +L +T D + TLK GQ Sbjct: 90 ALWNHRDGSKQSKLVNFVARKEITKKKMVKRIADLGQTYYIDTQNPREALATLKDFGQ-- 147 Query: 266 PFLHREKTCAILSANGKEIYSCELG 290 F+ R K+C ++ A G +LG Sbjct: 148 -FIKRNKSCGVIFAEGTRTKDGKLG 171 >gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] Length = 366 Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust. Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGIIEINPSIAFPMLDRLLGGKGE 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P +R S +E L +L +ST +E+ P +E + I+ + + N + Sbjct: 140 --PFDASREFSDIELSL-------FETILRVMMSTLKEAWGPVMEIYPTIESKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + + +I E +L + +++ +S KS N Sbjct: 191 QIVAQNEIVVMVVMEIIIGHSSGMMNICYPVISLEPVLPKLASRDLMLNETSSKKSRNTE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ A+ VN++ + ++ D++ LK+G VI ++ +GKE Sbjct: 251 LKVLLGGAK------VNVEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKER 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + E+G +I IT+ I ++ ++K L Sbjct: 305 FRGEIGLRRFRKSISITEIIETEKDTVKRALE 336 >gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565] gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565] Length = 356 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E + + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELRPGDIIPVDMPENLLVFVED--LPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36] gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36] Length = 350 Score = 40.8 bits (94), Expect = 0.26, Method: Compositional matrix adjust. Identities = 44/253 (17%), Positives = 94/253 (37%), Gaps = 17/253 (6%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + + LV L+EN G Sbjct: 77 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRY 136 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L E+ + D + +YL N ++ Sbjct: 137 HAKIEGREFTPTERRI-------IQMLLKIVFEDYHEAWAPVMD-AEFEYLDSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V + ++ ++ F + +P L L+ Q+ E+ E Sbjct: 189 NIVSPTEVVVVSSFHIELDGGGGDFHITMPYSMLEPIRELLDAGVQSDKEDTDERWSSAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + V + T++ + T+ ++ L++G +IP E+ + Y +LGR Sbjct: 249 QEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIEMPEELTVFIEDLPS--YKAKLGR 306 Query: 292 VGKNYTIRITDRI 304 N ++I+ ++ Sbjct: 307 NKDNVAVKISRKL 319 >gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium HP15] Length = 332 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/257 (19%), Positives = 98/257 (38%), Gaps = 18/257 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + D+S Q KF IH+ + + LV L++N G Sbjct: 71 MRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFG 130 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + VL+Q +E+ + D +YL Sbjct: 131 GEGRH-AKIEGREFTPTETRI-------VQMVLDQVFHDMKEAWHAVLKV-DFEYLSSEV 181 Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSED 226 N ++N E V ++ ++ +P + ++ Q+ ++ E Sbjct: 182 NPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDER 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 ++ +++V I+T + ++ +L+D+ +K G +IP E ++ANG IY Sbjct: 242 WVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPEHLT--VTANGIPIYK 299 Query: 287 CELGRVGKNYTIRITDR 303 LG +RI +R Sbjct: 300 ATLGTRDGKLALRIHER 316 >gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato Max13] gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato K40] gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP +L ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDTLVLRANGVPSFKVKLG 305 >gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. maculicola str. ES4326] Length = 252 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 8 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 67 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 68 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 118 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 119 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 178 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 179 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 235 >gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae FF5] gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aceris str. M302273PT] Length = 322 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 305 >gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM 1740] gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes] Length = 354 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 30/273 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 79 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P R S +E L + +L Q + +E+ +P E F +D + + N + Sbjct: 139 --PYEATREFSDIELNL-------LDTILRQMMQNLKEAWAPVAEIFPSVDAKESSPNVV 189 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + L +I E++L + ++S +S KS N+ Sbjct: 190 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDLMLSETSSKKSRNRE 249 Query: 225 -EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 + L+ A VNI + LK+V+ L +G ++ I++ +G+E Sbjct: 250 LQALLGGAA-------VNISAVLGGTSLDLKEVLELGVGDIVRLDRPADDTVIVNVDGRE 302 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 Y +G T++I + I ++ +K L Sbjct: 303 KYIATIGLQRYRKTVKIKEVIKTEKDQVKEILE 335 >gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] Length = 326 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 21/207 (10%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV +++NL G +P+ R + E+++ +R +LN + +S Sbjct: 121 LVFLVVDNLFGGDGRFLPKTEGRDFTQTEQRIIQR-------LLNLVFDSYGKS---WHP 170 Query: 163 FYDID--YLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLIS 213 Y I+ YL+ TN NE V + +V + +P L L+S Sbjct: 171 VYPIEFEYLRAETNTQFANVATPNEVVVATTFEVNFGSVVGEMHICMPYSILEPIRDLLS 230 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + Q ++ + + +++ V + + + L ++ +K+G VIP E Sbjct: 231 STLQGEALEVDKRWVGRLSKQVQSAEVTLLANLTHAQVRLDQILNMKVGDVIPLDIPEFV 290 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRI 300 A S +G + C+ G Y +R+ Sbjct: 291 TA--SVDGVPVMECKYGISNGRYALRM 315 >gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] Length = 325 Score = 40.4 bits (93), Expect = 0.31, Method: Compositional matrix adjust. Identities = 41/216 (18%), Positives = 86/216 (39%), Gaps = 18/216 (8%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VD++ S KF + S + + N + LV +L+EN G + Sbjct: 77 VDVNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALLVVDTRLVFSLVENFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175 P++ R + +E+ + + + I A L E S I+ L+ N Sbjct: 137 Q-PKIEGRDFTPIEQSIIVKVVKIILANLEDAWRPVHEVS--------IELLRSEINPQF 187 Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 ++ V I+ + +EN S VL +P T+ +++ L + + Q + I Sbjct: 188 ATIVPPSDVVVVISFEVELENALGSMVLALPYATIEPIRSKLYA-AFQTERLEIDHAWIS 246 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 F + + V+++ + T + ++ +K+G ++ Sbjct: 247 RFRDRLMETPVDMNVTFGTTQITGRQLLDMKVGDIL 282 >gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1] gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/253 (15%), Positives = 94/253 (37%), Gaps = 18/253 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E + ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + ++V I + ++ L+D++ ++ G VIP E I+ ANG + ++G Sbjct: 249 RQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMPEDM--IMRANGVPAFKVKMGS 306 Query: 292 VGKNYTIRITDRI 304 N +++ + I Sbjct: 307 HKGNLALQVIEPI 319 >gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 356 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E + + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFVED--LPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 356 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 46/254 (18%), Positives = 101/254 (39%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L+EN G Sbjct: 76 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRY 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ I +L +++ + D +YL N ++ Sbjct: 136 HAKIEGREFTPTERRI-------IQMLLKLVFEDYKDAWAPVMD-VGFEYLDSEVNPAMA 187 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E + + ++ ++ F + +P ++L+ L + +S+ D+ A Sbjct: 188 NIVSPTEVIVVSSFHIELDGGGGDFHVAMPY-SMLEPIRELLDAGVQSDKGDTDVRWSKA 246 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ R L +T TL++++ L+ G +IP E + + ++G Sbjct: 247 LRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPENLLVFV--EDLPTFHAKMG 304 Query: 291 RVGKNYTIRITDRI 304 R N ++ITD++ Sbjct: 305 RTKDNVALKITDKL 318 >gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] Length = 336 Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust. Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 9/208 (4%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NL+ +++NL G ++ R + VE+++ +R + V Q P Sbjct: 122 NLIFLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQR---MLHLVFEHYAKAWQPVYPIDF 178 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +F ++ + N + NE V T + ++ + + + +P T+++ L+S + Sbjct: 179 EFLRMEMHTEFANVATPNEVVITTSFSIELGSNGGDVHICMPY-TMIEPIRDRLTSAIQG 237 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + +++ V + + K + D++ +K+G VIP C Sbjct: 238 EALEVDKRWLRLLSQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPL--ELDDCVTAK 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + C G Y +R+ +N Sbjct: 296 VDGVPVMECNYGTFNGQYALRVNRMLNM 323 >gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] Length = 352 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 53/272 (19%), Positives = 112/272 (41%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 80 VEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGD 139 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P R S +E L + +L Q + +E+ +P E F ++D + + N + Sbjct: 140 --PYESTREFSDIELNL-------LDTILRQMMQNLKEAWAPITEIFPNVDVKESSPNVV 190 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + L +I E++L + ++S +S KS N+ Sbjct: 191 QIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKE 250 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A+ VN+ + K TL++++ L+ G ++ I++ +G+E Sbjct: 251 LQALLGGAK------VNVTAMLGETKLTLREILELESGDIVRLDRPADDTVIINVDGREK 304 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + +G TI + + I ++ +K L Sbjct: 305 FLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336 >gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust. Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 18/239 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + A + LV L++N G Sbjct: 78 DVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V ++ ++ + +P + ++ Q+ ++Q E ++ Sbjct: 189 NIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 +NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG Sbjct: 249 KEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPV--ELSDSLVMRANGVPSFKVKLG 305 >gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] Length = 329 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 56/268 (20%), Positives = 109/268 (40%), Gaps = 27/268 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW----SSNFFIGCSNNLVITLLENLLG 113 D+S Q KF +H+ +V + +L + S+ FI LV L++N G Sbjct: 75 ADVSSGGLQIMKFGEYVHTL---YVPTSLNLVKFRPLRSTALFI-LDAKLVFKLVDNFFG 130 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + + Q+ + T+ +P L+ +++Y+ Sbjct: 131 GDGRH-AKIEGREFTPTEIRIVQLMLEQV------FVDLTEAWAPVLK--LELEYISSEV 181 Query: 174 N-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSED 226 N ++N E V ++ ++ + +P + L+ Q+ + + + Sbjct: 182 NPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVRELLDAGVQSDVDEKDDR 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + ++VN+ I KK TL DV+ K G VIP E + AN + Sbjct: 242 WGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMPEYVT--VRANNVPTFR 299 Query: 287 CELGRVGKNYTIRITDRINFDQK-SLKN 313 +LG Y++++ + I K SLKN Sbjct: 300 GKLGSSNGKYSVQMKESIKAQMKESLKN 327 >gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 342 Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust. Identities = 41/215 (19%), Positives = 95/215 (44%), Gaps = 15/215 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V + S + + I S + V + SSN + + LV +++ +LG + + Sbjct: 79 VSVEVASVEQLSYDEFIKSLVQPTVIVVMEMYPLSSNALLEINPRLVFAIIDRMLGGAGK 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T + R L+ +E+ + +R + ++ +L + +T + +++ Y + + Sbjct: 139 TTYK--ARELTDIERTVTERVVMRMLELLEESWATIVDLRFRIQNMESNPYFAQICP--A 194 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-------NKSENQSEDLIDP 230 ++ V I + + I +V + IP ++ + LSSQ ++ ++ S++ I Sbjct: 195 SDVVVVITLQVKIGDVDGFINICIPY-FAIEPVIDQLSSQRWFVSTGSREDDASQERI-- 251 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + ++ V + I LKD++ L++G VI Sbjct: 252 -IERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVI 285 >gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] Length = 342 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 45/254 (17%), Positives = 102/254 (40%), Gaps = 19/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 75 EVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALITMEARLVFILVDNFFGGDGRF 134 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + +L +++ + D + DYL N ++ Sbjct: 135 HAKIEGREFTPTERRI-------VQLLLKIIFEDYKDAWAPVMDV-EFDYLDSEVNPAMA 186 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++++ L + +S+ Q D+ A Sbjct: 187 NIVSPTEVVVVNSFHIEVDGGGGDFHITMPY-SMIEPIRELLDAGVQSDKQDTDMRWSQA 245 Query: 233 RKTYQLNVNI--DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 K ++V + + + + +L+DV+ ++ G VIP E ++ Y C+LG Sbjct: 246 LKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPE--YVLMKIEELPTYRCKLG 303 Query: 291 RVGKNYTIRITDRI 304 + + ++I ++I Sbjct: 304 KSREQLALKICEKI 317 >gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218] Length = 352 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 39/211 (18%), Positives = 96/211 (45%), Gaps = 21/211 (9%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLE 161 LV L+EN G ++ R + E+++ I +L +++ +P + Sbjct: 121 LVFILVENFFGGDGRYHARIEGREFTPTERRV-------IQLLLKIVFGDYKDAWAPVMG 173 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +YL N ++N E + + ++ ++ F +++P ++++ L Sbjct: 174 --VEFEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHIVMPY-SMVEPIRELLD 230 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKT 273 + +S+ D+ A + ++V ++ R+NL + L+D++ L++G +IP E Sbjct: 231 AGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDLALRDLMELQVGDIIPIKMPEH- 289 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 A + Y ++GR G+ ++++++I Sbjct: 290 -ATMFVEELPTYRVKMGRSGEKLAVQVSEKI 319 >gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14] Length = 349 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R L +L+D++ L++G VIP Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E+ A + Y ++GR G N ++I++++ Sbjct: 283 IDMPEQ--ATIFVEDLPTYHAKMGRSGDNVALKISEKL 318 >gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 349 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R L +L+D++ L++G VIP Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E+ A + Y ++GR G N ++I++++ Sbjct: 283 IDMPEQ--ATIFVEDLPTYHAKMGRSGDNVALKISEKL 318 >gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 349 Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust. Identities = 42/218 (19%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ D+ A + ++V ++ R L +L+D++ L++G VIP Sbjct: 223 PIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E+ A + Y ++GR G N ++I++++ Sbjct: 283 IDMPEQ--ATIFIEDLPTYHAKMGRSGDNVALKISEKL 318 >gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] Length = 352 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++S Q KF IH+ + I LV L++N G Sbjct: 76 AEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGR 135 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ + + I + + + S +YL N + Sbjct: 136 YHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS--------FEYLDSEVNPAM 187 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E V + ++ ++ F + +P ++L+ L + +S+ + DL Sbjct: 188 ANIVSPTEVVVISSFHIELDGGGGDFHVSLPY-SMLEPIRELLDAGVQSDKEDTDLRWSK 246 Query: 232 ARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ ++ TL + ++ +K G +IP E ++ + +L Sbjct: 247 ALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPEHITVMIEE--LPTFRAKL 304 Query: 290 GRVGKNYTIRITDRI 304 GR N ++ITD+I Sbjct: 305 GRSRDNLALKITDKI 319 >gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] Length = 352 Score = 39.3 bits (90), Expect = 0.77, Method: Compositional matrix adjust. Identities = 46/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 ++S Q KF IH+ + I LV L++N G Sbjct: 76 AEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGR 135 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RL 176 ++ R + E+++ + + I + + + S +YL N + Sbjct: 136 YHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS--------FEYLDSEVNPAM 187 Query: 177 SN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N E V + ++ ++ F + +P ++L+ L + +S+ + DL Sbjct: 188 ANIVSPTEVVVISSFHIELDGGGGDFHVSLPY-SMLEPIRELLDAGVQSDKEDTDLRWSK 246 Query: 232 ARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + ++V ++ ++ TL + ++ +K G +IP E ++ + +L Sbjct: 247 ALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPEHITVMIEE--LPTFRAKL 304 Query: 290 GRVGKNYTIRITDRI 304 GR N ++ITD+I Sbjct: 305 GRSRDNLALKITDKI 319 >gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132] gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans ND132] Length = 325 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VDI+ S KF + S S + N + + LV L+EN G + Sbjct: 77 VDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175 P++ R + +E+ + +R V+ ++ +ES + + + ++ ++ N Sbjct: 137 Q-PKVEGRDFTPIEQAIVER-------VVKIALANMEESWKPVHEVH-VEMVRTEVNPQF 187 Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---- 227 ++ V + + +EN S ++ +P T+ + S+ + QSE L Sbjct: 188 AAIVPPSDVVIVVTFEVELENAIGSLIVCLPY-----ATMEPIRSKLHASFQSERLEVDH 242 Query: 228 --IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 I+ F + + V + R+ + + ++ L+ G +I E G + Sbjct: 243 VWINRFKERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKF 302 Query: 286 SCELGRVGKNYTIRI 300 GRV N + ++ Sbjct: 303 QGLPGRVKGNKSFKV 317 >gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 44/250 (17%), Positives = 104/250 (41%), Gaps = 9/250 (3%) Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 +V + + + + IHS + + + + + N + + +++ LLG + Sbjct: 77 NVKVKIETVEQITYEEFIHSVQNPTIITVFKMPPLAGNIIFETNPQFSLQVIDILLGGNG 136 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + ++ + S ++K + ++ + + L + E P +E + N Sbjct: 137 DR--KVEAKEFSDIDKNIMRQITTGMISNLKLAWESILEVEPEVEGIETNPAI--NQTLA 192 Query: 177 SNEFVTTINMNMTIENVASSFV-LIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N+ V I ++ + N S+F+ + IP E +L ++ S +N E+ + + Sbjct: 193 PNDPVALITFSVEM-NKRSTFINMCIPYLSIEKILDKLVVQYSFKNDDESLKAESREKIE 251 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++++V++ + T++D + L +G VI R + + +E Y + G Sbjct: 252 EGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVIKLDTRSSSPIKVYVGNEECYCAKPGVS 311 Query: 293 GKNYTIRITD 302 GKN + I D Sbjct: 312 GKNMGVMILD 321 >gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] Length = 322 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 42/255 (16%), Positives = 95/255 (37%), Gaps = 20/255 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQGMKFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q L + E + +Y+ N ++ Sbjct: 138 A-KIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIME--------VNFEYINSEVNPAMA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E + ++ ++ + +P + ++ Q+ ++Q E + Sbjct: 189 NIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKAL 248 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELG 290 ++V + + ++ L+D++ ++ G VIP L +E I+ ANG + +LG Sbjct: 249 REDLLDVDVPLSATVARRQLRLRDILHMQPGDVIPVELPQE---MIMRANGVPSFKVKLG 305 Query: 291 RVGKNYTIRITDRIN 305 N +++ + IN Sbjct: 306 SHKGNLALQVIEPIN 320 >gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] Length = 342 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +HS + + LV L++N G Sbjct: 97 DVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGRH 156 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+Q + +E+ + D + +Y+ N L+ Sbjct: 157 A-KIEGREFTPTELRVVR-------MVLDQAFADLKEAWHAVLDV-NFEYVNSEVNPALA 207 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ +V + +I P +L Q+ +Q E Sbjct: 208 NIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGF-----QSDVSDQDER 262 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + +NV + + ++ L+D++ ++ G VIP E I+ ANG + Sbjct: 263 WVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDM--IMRANGMPAFK 320 Query: 287 CELGRVGKNYTIRITDRI 304 +LG N +++ + + Sbjct: 321 VKLGAHKGNLALQVLEPV 338 >gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166] Length = 323 Score = 38.9 bits (89), Expect = 0.89, Method: Compositional matrix adjust. Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S Q KF +HS + + LV L++N G Sbjct: 78 DVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + VL+Q + +E+ + D + +Y+ N L+ Sbjct: 138 A-KIEGREFTPTELRVVR-------MVLDQAFADLKEAWHAVLDV-NFEYVNSEVNPALA 188 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ +V + +I P +L Q+ +Q E Sbjct: 189 NIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIREMLDAGF-----QSDVSDQDER 243 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + +NV + + ++ L+D++ ++ G VIP E I+ ANG + Sbjct: 244 WVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPEDM--IMRANGMPAFK 301 Query: 287 CELGRVGKNYTIRITDRI 304 +LG N +++ + + Sbjct: 302 VKLGAHKGNLALQVLEPV 319 >gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] Length = 341 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 51/255 (20%), Positives = 107/255 (41%), Gaps = 16/255 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S + S +F ++S + S W + + + L+ ++++ LLG Sbjct: 92 VEVSLDNITSIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVDSALIYSIVDVLLGGRRG 151 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 T ++ R +T+E+ L +R ++ VL+ + SP + D L+ N Sbjct: 152 TAAMRIEGRPYTTIERNLVER---MVTVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 205 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N V + + +E+ L++P TL ++ L+ + K S Sbjct: 206 TIARPANAAVLA-RLRIDMEDRGGRLELMLPYATLEPVRELLLQMFMGEKFGRDSI-WET 263 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + +V +D ++ L DV+ LK G I + + ++S ++ Sbjct: 264 HLANELWNTDVELDAVLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDMRCGNVSLFSGKM 323 Query: 290 GRVGKNYTIRITDRI 304 GR + +RI++R+ Sbjct: 324 GRKNGSIAVRISNRL 338 >gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] Length = 320 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 VN+ ++ K+ L+D++ LK G VIP ++SANG + +LG+ N ++ Sbjct: 255 VNMGCKVAEKEVPLRDIIDLKEGDVIPM--EMPGDLVISANGIPMMLAKLGQSKGNLALQ 312 Query: 300 ITDRIN 305 + ++IN Sbjct: 313 VVEKIN 318 >gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 364 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 47/265 (17%), Positives = 99/265 (37%), Gaps = 18/265 (6%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF IH+ + I LV L++N G Sbjct: 79 EVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 138 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + + S +YL N ++ Sbjct: 139 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 190 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPF 231 N E V + ++ ++ F + +P L L+ Q+ +E+ Sbjct: 191 NIVSPTEVVVISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKAL 250 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + V + TR+ K +L+ ++ L+ G VIP E + + ++GR Sbjct: 251 RDEIMDVEVGLSTRMLEVKLSLEQIMNLQAGDVIPVEMPEHITVFI--EDLPTFRAKMGR 308 Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316 N ++I+++I S+K+ +H Sbjct: 309 SRDNVALQISEKIK-RPDSVKSEMH 332 >gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/206 (18%), Positives = 78/206 (37%), Gaps = 17/206 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G ++ R + E+++ +R +A V + + P Sbjct: 120 NLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILA---IVFENYAKSWEPVYP--- 173 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + +Y++ N NE V + + V+ IP T+ I S Sbjct: 174 --VEFEYIRSEMNTQFANIATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTS 231 Query: 216 S-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S Q ++ + I ++ V I + ++ ++ +K+G +IP + Sbjct: 232 SLQGETLEVDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVL 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 A +G + C G+ Y +R+ Sbjct: 292 A--KVDGVPVMECTYGKFNGQYALRV 315 >gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] Length = 412 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 112/271 (41%), Gaps = 28/271 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S S +F ++S + W I ++L+ ++++ LLG Sbjct: 145 VEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLITVESSLIYSIIDVLLGGGRG 204 Query: 118 T-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T ++ R +T+E L ++ +A I L SP ++++ L+ N Sbjct: 205 TSAVRVEGRPYTTIETGLVQQMVALI---LQDAEHAFAPLSPV---HFNLERLETNPRFA 258 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 +R +N + + + + +E+ S +++P TL ++ L+ + K D Sbjct: 259 AISRPANAAI-LVELRIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMGEKFGR------D 311 Query: 230 P-----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK-E 283 P A + + V +D + L V++L +GQ + F +E T ++ G Sbjct: 312 PIWEGHLATEIHAAEVEVDAVLYETYLPLGRVLSLDVGQTLVF-DKEPTDPVMIKCGNIP 370 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+V + IR+ + + +L F Sbjct: 371 LTEGTLGKVDDSIAIRVAKNLRKPKMTLAAF 401 >gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92] gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92] Length = 366 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 28/273 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ N + + ++ +++ LLG + E Sbjct: 81 VEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGE 140 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY-DIDYLKKNTNRL 176 NR L+ +E L + AVL + +ES + D Y +++ + + N + Sbjct: 141 NFET--NRELTDIEVNL-------LDAVLRMIMQRLKESWAMITDMYPNVEAKESSPNVV 191 Query: 177 S----NEFVTTINMNMTIENVASSFVLIIPQ---ETLL-----KTTLISLSSQNKSENQS 224 NE V + M + + N + L P E +L + ++ +S KS N+ Sbjct: 192 QIVSQNEIVIMVVMEIIVGNSSGMINLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKE 251 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A Y+ + ++ + + LK G ++ AI+ + KE+ Sbjct: 252 LKTLIGRAEVLYE------AILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCIDKKEV 305 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + E+G +I+I I D+ +KN L K Sbjct: 306 FLAEVGLHRFRKSIKIEQLIRSDKDEIKNILEK 338 >gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] Length = 334 Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/246 (18%), Positives = 97/246 (39%), Gaps = 11/246 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R ST E+++ R + V+ + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSTTEQRVINRMVN----VICEEYKKAWHGIYPLELAYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ S + +P TL ++ L S S+Q + + R+ Sbjct: 194 PSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYS-STQGDAIEVDRRWVKVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ ++ G I L RE S G ++ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMRPGDFIE-LDREPLIR-ASIGGVPVFECQYGTHND 310 Query: 295 NYTIRI 300 Y IR+ Sbjct: 311 KYAIRV 316 >gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] Length = 334 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/262 (17%), Positives = 101/262 (38%), Gaps = 11/262 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R ST E+++ R + V+ + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSTTEQRVINRMVN----VICEEYKKAWHGIYPLELAYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ S + +P TL ++ L S S+Q + + R+ Sbjct: 194 PSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYS-STQGDAIEVDRRWVKVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ ++ G I L RE S G ++ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMRPGDFIE-LDREPLIR-ASIGGVPVFECQYGTHND 310 Query: 295 NYTIRITDRINFDQKSLKNFLH 316 Y IR+ + + S H Sbjct: 311 KYAIRVERSLRGGETSWMGEKH 332 >gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1] gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1] Length = 354 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 20/254 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF +HS + + LV L++N G Sbjct: 78 DVAVGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFILDAKLVFKLVDNFFGGDGRH 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 + ++ R + E ++ + VL Q +E+ + +YL N L+ Sbjct: 138 V-KIEGREFTPTENRV-------VQLVLKQAFKDMEEAWKAVLPV-KFEYLSSEVNPALA 188 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDP 230 N E V ++ ++ L +P + L+ L S Q+ NQ E + Sbjct: 189 NIVSPSEVVVVNTFHIELDGGGGDLQLTVPYSMIEPLREVLDS-GVQSDVGNQDERWMSS 247 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + NV++ ++ +K L ++ LK G V+ E ++ AN Y +LG Sbjct: 248 LREEIMGANVHLRCKLLDRKIKLSELAALKTGDVLQVEMPEHV--MIYANEVPTYRGKLG 305 Query: 291 RVGKNYTIRITDRI 304 + Y ++I +++ Sbjct: 306 TSREKYAVKIAEKV 319 >gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] Length = 326 Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust. Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 29/259 (11%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + KFS +H+ + + LV L++N G Sbjct: 80 EISVGGIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVVDPKLVFILVDNFFGGDGRY 139 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + T L+Q + +++ + D D +Y+ N + + Sbjct: 140 HAKIEGREFTPTELRVIRMT-------LDQAFTDLKKAWAPVMDL-DFEYINSEVNPQFA 191 Query: 178 N-----EFVTTINMNMTIE------NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N E V + ++ ++ +V + +I P LL + Q+ + E Sbjct: 192 NIVSPTEVVCVSSFHIELDGGGGDLHVTMPYSMIEPMRELLDAGI-----QSDRSDVDER 246 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 I + V + + + +L+DV+ LK G +IP E+ +L A G + Sbjct: 247 WIRALRDEVKAAEVELSSMLTETTLSLEDVMRLKPGDIIPIDLPEQV--LLRAEGIPVLR 304 Query: 287 CELGRVGKNY-TIRITDRI 304 + G V Y I++T+RI Sbjct: 305 GKFG-VSDGYNAIKVTERI 322 >gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H] gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H] Length = 343 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 22/262 (8%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA--- 114 V+ S S +F + + +F+ W + + S++L+ ++++ LLG Sbjct: 78 VEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSLIYSIVDALLGGHVR 137 Query: 115 --SHETIP--QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170 S T P + R + +E+ L + + I L S P + + L+ Sbjct: 138 GDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFS------PLCAVNFHFERLE 191 Query: 171 KNTN-----RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 N+ R N VT + +E +++P TL I L Q E Sbjct: 192 MNSRFAMICRAGNGVVTA-RFGIDMEGRGGDVDIVLPHATLEPVRDILLQ-QFMGEKFGH 249 Query: 226 DLI--DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 D I + AR+ +Q ++ +D + + LKD++ L G + + L Sbjct: 250 DGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVSLRCGEHV 309 Query: 284 IYSCELGRVGKNYTIRITDRIN 305 +++ +GR ++I D +N Sbjct: 310 LFTGRVGRKQGQVAVKIEDVLN 331 >gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 26/255 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VDI+ S KF + S S + N + + LV L+EN G + Sbjct: 77 VDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGS 136 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-- 175 P++ R + +E+ + +R V+ ++ +ES + + + ++ ++ N Sbjct: 137 Q-PKVEGRDFTPIEQAIVER-------VVKIALANMEESWKPVHEVH-VELVRTEVNPQF 187 Query: 176 ----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---- 227 ++ V + + +EN S ++ +P T+ + S+ + QSE L Sbjct: 188 AAIVPPSDVVIVVTFEVELENAIGSLIVCLPY-----ATMEPIRSKLHASFQSERLEVDH 242 Query: 228 --IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 I+ F + + V + R+ + + ++ L+ G +I E G + Sbjct: 243 VWINRFKERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKF 302 Query: 286 SCELGRVGKNYTIRI 300 GRV N + ++ Sbjct: 303 QGLPGRVKGNKSFQV 317 >gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 337 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 27/286 (9%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N +N E+V ++ +E + Sbjct: 165 LKEAWAPVMD--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ TL+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMTLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301 LK+G V+P E + L +++ E G N ++IT Sbjct: 275 TGLKVGDVLPI---ELPAQVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 403 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 48/252 (19%), Positives = 101/252 (40%), Gaps = 16/252 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+++ + S +F +++ + W ++ + +NL L+ LLG Sbjct: 137 VEVTLDNITSVRFGDYLNAIPLPTLLGVFKADLWENSGLVTVDSNLAYATLDLLLGGKRG 196 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT--- 173 T +L R +++E L +R + +L ++ Q SP + ID L+ N Sbjct: 197 TTTIRLDGRPFTSIEMSLVRR---MLEIILGDLEASFQPLSPVR---FQIDRLESNPRFA 250 Query: 174 --NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--D 229 R +N + I++ + +E ++ P T+ + L S E D + Sbjct: 251 TITRPANAAI-LIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQS-FMGEKLGRDHVWEG 308 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + +Q V ++ ++ LK V+ L++G I F + L + + Sbjct: 309 HLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTILFDAKPTDLITLRCGDWALSQGRI 368 Query: 290 GRVGKNYTIRIT 301 GR+ + +++T Sbjct: 369 GRLEDSIAVQVT 380 >gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] Length = 335 Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 9/208 (4%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NL+ +++NL G ++ R + VE+++ +R + V Q P Sbjct: 121 NLIFLVVDNLFGGDGRFHMRVEGRDFTDVEQRIIQR---MLQLVFEHYARAWQPVYPIDF 177 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +F ++ + N + NE V T ++ + N + +P T+++ L+S + Sbjct: 178 EFLRMEMHTEFANVATPNEVVVTTTFSLELGNNGGDVHICMPY-TMIEPIRDRLTSAIQG 236 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + +++ V + + + D++ +K+G VIP + A Sbjct: 237 EALEVDKRWLRLLSQQVQTAEVELIADLATANVQVSDILNMKVGDVIPLELDDVVTA--K 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + C G Y +R+ +N Sbjct: 295 VDGVPVMECNYGTFNGQYALRVNRMLNM 322 >gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] Length = 372 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 28/272 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + I + ++ +L+ LLG E Sbjct: 83 VEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGE 142 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKNTNRL 176 P +R S +E L +L +ST +++ P +E F +I+ + + N + Sbjct: 143 --PFDASREFSDIELSL-------FETILRVMMSTLKDAWGPVMEIFPNIESKESSPNVV 193 Query: 177 S----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQS 224 NE V + M + I + + +I E +L + +++ +S KS N Sbjct: 194 QIVAQNEIVVMVVMEIIIGQSSGMMNICYPVIALEPVLPKLASRDLMLNETSTKKSRNTE 253 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++ A+ V I+ + + TL+DV+ L+ G ++ + +GK+ Sbjct: 254 LHVLLGGAK------VGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTICVDGKDR 307 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + ++G ++++T+ I+ ++ ++K L Sbjct: 308 FRGKIGLRRFRKSVQVTEIIDTERDAVKRALE 339 >gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] Length = 329 Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust. Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 17/207 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++N+ G ++ R + E+ R I ++ AV+ + + E+ LE Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGREFTQTEQ----RIIQKMLAVVFETYAKAWETVYPLE 176 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214 ++++ N NE V ++ + +F + +P TL L+ Sbjct: 177 ----FEFVRSEMNPQFANIATPNEVVIVTTFDIELGGNGGAFHICMPYSTLEPVKDLLFN 232 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + Q + + + +R+ + + + TL+ V+ +++G VIP E Sbjct: 233 NIQGEHLAVDKRWLQLLSRQVQCAEIELAATLGQANITLERVLKMRVGDVIPLNVDENIT 292 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 A S +G I C+ G Y ++I Sbjct: 293 A--SIDGVPIMECKYGVFNNQYALKIV 317 >gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYP----LELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ + + +P TL ++ L S S+Q S + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I + A S G I+ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] Length = 334 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYP----LELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ + + +P TL ++ L S S+Q S + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I + A S G I+ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 337 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 52/286 (18%), Positives = 103/286 (36%), Gaps = 27/286 (9%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVMD--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ TL+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMTLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301 LK+G V+P E + L +++ E G N ++IT Sbjct: 275 TGLKVGDVLPI---ELPAQVPLCVEDIPLFTGEFGISNGNNAVKIT 317 >gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB] gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB] Length = 338 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 24/212 (11%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++N+ G ++ R + E+++ I +LN + E S + + Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRI-------IQGLLNVVFT---EYSKSWK 170 Query: 162 DFYDI--DYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 YDI +Y++ N + +N E V + + + + P ++L+ Sbjct: 171 PVYDINFEYIRSEMNSQFANIATPSEIVVSTTFTLEFGGATADMHICFPY-SMLEPIRDL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S +S+ S D I ++ V I + K TL ++ LK+G VIP + Sbjct: 230 LYSTMQSDQLSSDKRWIGTLRKQLQGAEVEIVALLGSGKITLGQILKLKVGDVIPLHIPD 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 K A++ + + C G+ Y +++ DR Sbjct: 290 KIEALVDS--VPLMECTYGQQSGQYALKV-DR 318 >gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] Length = 332 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 48/271 (17%), Positives = 108/271 (39%), Gaps = 17/271 (6%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 Y + L ++ V ++ S + I S + + + F I + Sbjct: 62 YARLLTTQLSAQLRTYVQVAVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEVNP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 N+ +L+ +LG E + ++ SL+ +E K+ +S + + + T +E+ ++ Sbjct: 122 NIAYAMLDRMLGGQGEALNKV--ESLTEIETKI-------LSQLFQRSLETLREAWESVV 172 Query: 162 DFYDI-DYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLIS 213 D + D ++ N L NE V I+++ TI + + +P E++L I Sbjct: 173 DLDPVMDEIEVNPQFLQLVSPNETVVVISLSTTIGEASGMMNICLPHVVIESILPKLSIH 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L Q K +++ + + Q +++ + + ++ + + L VI Sbjct: 233 LWMQQKKKDRQPGELSALEKNLKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ + Y + G+V ++ITD I Sbjct: 293 PLLVKLGNEPKYYSQPGKVKGKLAVQITDSI 323 >gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 110/271 (40%), Gaps = 26/271 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ + + ++ +++ LLG + Sbjct: 79 VEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGD 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 P +R S +E L + QI L + S+ E P+ +D + + N + Sbjct: 139 --PYENSREFSDIELNLLDTLLRQIMQNLKEAWSSITEIFPS------VDAKESSPNVVQ 190 Query: 178 ----NEFVTTINMNMTIENVASSFVL---IIPQETLL-----KTTLISLSSQNKSENQSE 225 NE V + M + I + + + +I ET+L + ++S +S KS N+ Sbjct: 191 IVAQNEIVIMVVMEIIIGHSSGMMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKEL 250 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + A NV + + +LK+V+ L++G ++ ++S +G+E Y Sbjct: 251 QALIAGA------NVVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVSVDGREKY 304 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +G T++I + I ++ +K L Sbjct: 305 IASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335 >gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] Length = 334 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + LE Y ++ ++ Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIY----PLELEYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I +++ + + +P TL ++ L S S+Q S + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYS-STQGDSIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I + A S G I+ C+ G Sbjct: 253 IQAAEVTLVAELAQADATVEQLLAMKPGDFIELDREPRIRA--SIGGVPIFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] Length = 327 Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust. Identities = 57/292 (19%), Positives = 115/292 (39%), Gaps = 37/292 (12%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ + +DV + + +S ++ + ++ Sbjct: 52 RTLEIIFEHFGRLLATNLPGYLRKTVSVDV----VNSEVVIYSEFSNALSNPVLLGVVTM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + ++NL +++ LLG S T+ + R S +E + +R +L + Sbjct: 108 PPLKGNIIMEMASNLGYAIIDRLLGGSGNTMDK--ARDFSEIELTILERIFTICVNLLQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---------------NV 193 ++SP LE + TN ++F I+ + TI N+ Sbjct: 166 PWQNVVQTSPRLE--------RIETN---SQFAQIISPSETIAIVTLSIKIGEVEGLMNI 214 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 FV + P L T + Q+K + +D I+ + + + + + ++ Sbjct: 215 CLPFVTLEPVMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRA---QIPMKAVLGHSRISV 271 Query: 254 KDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 D V L++G +I + + + N K+ ++ G Y IRIT+ I Sbjct: 272 GDFVNLQLGDIIRLDRKVDDELEVYVGNIKK-FAALPGYSEDKYAIRITEVI 322 >gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] Length = 328 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 56/281 (19%), Positives = 119/281 (42%), Gaps = 23/281 (8%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +D+++ I + + S +I SF V + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLRTFVDVEISIDQLTYEEFIRSVMIPSF---IVIFTGDV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S+ F + +L T+L+ ++G + P NR+ + +E + +R + I +L Q Sbjct: 110 FEGSAIFEMRL--DLFYTILDIIMGGPGDNPP---NRTPTDIETSIMRREVTNILTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSFVLIIPQE 204 S Q P++E+ ++ N + NE V + +++ +SF+ + Sbjct: 165 AWSDFQYFIPSIEN------IETNPQFVQIVPPNEIVLLVTASVSWGEF-TSFINVCWPF 217 Query: 205 TLLKTTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +LL+ L LS++ + + E+ ++ + + + + I TL++V+ L+ Sbjct: 218 SLLEPFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPLTVQAVIGEAWLTLREVLNLQ 277 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 G VI K + GK + G+ Y ++IT Sbjct: 278 EGDVIRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKIT 318 >gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] Length = 335 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 30/223 (13%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV ++++L G ++ R +T E+++ +R +LN + + +S + Sbjct: 122 NLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRR-------LLNLTLESYGKS---WD 171 Query: 162 DFYDID--YLKKNTNRL------SNEFVTTINMNMTIE------NVASSFVLIIPQETLL 207 Y I+ Y++ + +NE V + ++ N+ + +I P LL Sbjct: 172 PVYPIEFEYVRSEMHTKFASITGNNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLL 231 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 L + + + ++ L +R+ ++++ +++++++ LK+G V+P Sbjct: 232 TRPLQETTLEEVDQRWAQQL----SRQVRSADIDVVAEFARIPSSIRELMRLKVGDVLPV 287 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 E A S +G + C G Y +R+ + D +S Sbjct: 288 TVPETIVA--SVDGVPLMECGYGVFNGQYALRVQNMFTHDTES 328 >gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis TAC125] gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 363 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/266 (18%), Positives = 104/266 (39%), Gaps = 20/266 (7%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S Q KF +H+ + I LV L++N G Sbjct: 78 EVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRY 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E+++ + + I + + + S +YL N ++ Sbjct: 138 HAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMA 189 Query: 178 N-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 N E V + ++ ++ F + +P ++L+ L + +S+ + DL A Sbjct: 190 NIVSPTEVVVISSFHIELDGGGGDFHIALPY-SMLEPIRELLDAGVQSDTEDTDLRWSKA 248 Query: 233 RKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + ++V ++ L + TLK ++ LK G +IP E + + ++G Sbjct: 249 LRDEIMDVEVELSTQLLEVDLTLKQIMELKAGDIIPVEMPEHITVFVEE--LPTFRAKMG 306 Query: 291 RVGKNYTIRITDRINFDQKSLKNFLH 316 R + ++I+++I S+K+ LH Sbjct: 307 RSRDSVALQISEKIK-RPDSVKSELH 331 >gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134] gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134] Length = 337 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 16/210 (7%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G ++ R + E+++ +R + T P Sbjct: 125 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLEMTLTSYGNAWRTVY---PIET 181 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQN 218 ++ + K N + NE V T ++ + V + +P + LK L++ Sbjct: 182 EYVRSEMHTKFANVATVNEAVITTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDE 241 Query: 219 KSENQSEDLIDPFARKTYQL---NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 K ++S A+ + QL +V + ++T+ +V+ L+ G V+P E Sbjct: 242 KEVDKSW-----LAKLSTQLRAADVEVVAEFTHVQSTVAEVLALRAGDVLPIELPEHVFG 296 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRIN 305 NG + C G + Y +R+ IN Sbjct: 297 --KVNGVPVMQCGFGTINGQYALRVERMIN 324 >gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 51/285 (17%), Positives = 102/285 (35%), Gaps = 25/285 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + E D +Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVME--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QLN V + + + K+ +L+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLNTAEVTLSSVLASKRMSLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 LK+G ++P + L +++ E G N ++IT Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPMFTGEFGVSNGNNAVKIT 317 >gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp. Marseille] gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp. Marseille] Length = 332 Score = 37.0 bits (84), Expect = 3.4, Method: Compositional matrix adjust. Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 17/206 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV L++NL G ++ R + E+++ +R I ++ + + + E +E Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQR----ILGIIFETYAKSWEPVYPVE 175 Query: 162 DFYDIDYLKKNTN------RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISL 214 +Y++ N NE V + + V+ P + L++ Sbjct: 176 ----FEYIRSEMNTQFANIATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTS 231 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S Q ++ + I ++ V I + K TL D++ ++ G +IP + Sbjct: 232 SMQGETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTIT 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 A + + C G++ Y +R+ Sbjct: 292 A--EVDSVPVMECSYGKLNGQYALRV 315 >gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 348 Score = 37.0 bits (84), Expect = 3.6, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ +D+ A + ++V ++ R L +L+D++ L+ G +IP Sbjct: 223 PIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++G+ G N ++IT ++ Sbjct: 283 IDVPE--SATVFVEDLPTYRAKMGKSGDNIALKITQKL 318 >gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] Length = 340 Score = 37.0 bits (84), Expect = 3.7, Method: Compositional matrix adjust. Identities = 46/258 (17%), Positives = 97/258 (37%), Gaps = 28/258 (10%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D++ Q KF IH+ + + LV L++N G Sbjct: 76 DVASGGVQILKFGEYIHTLYVPTSLNLVKIRPLRGTGLFILDAKLVFKLVDNFFGGDGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLS 177 ++ R + E ++ + + Q+ + + + + D +Y+ N ++ Sbjct: 136 -AKIEGREFTPTEIRIVQMVLEQVFHDMKEAWNAVMK--------VDFEYVNSEVNPAMA 186 Query: 178 N-----------EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 N F ++ +VA + +I P +L + Q+ ++ E Sbjct: 187 NIVSPSEVVVVSTFHIELDGGGGDMHVAMPYSMIEPIREVLDAGV-----QSDVDDVDER 241 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 I + + V ++ + +K +L+ + LK G VIP E ++ANG I+ Sbjct: 242 WISALQQDILEARVPLNAAVVRQKISLRSLSRLKPGDVIPVELPETIT--VTANGVPIFI 299 Query: 287 CELGRVGKNYTIRITDRI 304 ++G+ N ++I D+I Sbjct: 300 AKVGQCNGNLALKIVDKI 317 >gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY] gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY] Length = 334 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 11/248 (4%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS- 177 ++ R S E+++ R + I A + Q P LE Y ++ ++ Sbjct: 138 QTRIEGRDFSATEQRVINRLVDVICAEYKK---AWQGIYP-LELAYQRSEMQPQFANIAT 193 Query: 178 -NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + I ++A + + +P TL ++ L S S Q + + R+ Sbjct: 194 PSEIVVSTAFQLEIGDLAGAIHICMPYATLEPIRDVLYS-SVQGDAIEVDRRWVRVLTRE 252 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V + + T++ ++ +K G I L RE S G ++ C+ G Sbjct: 253 IQAAEVTLVAELARADATVEQLLAMKPGDFIE-LEREPRIR-ASIEGVPVFECQYGTHNS 310 Query: 295 NYTIRITD 302 Y IRI + Sbjct: 311 KYAIRIEE 318 >gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146] gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella ictaluri 93-146] Length = 337 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 40/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV ++NL G ++ R + E+++ I ++L + +++ + Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRV-------IQSMLRLALDAYRDAWSAIF 175 Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 DI+Y++ N N+ V T + + ++ F + IP + L+ L+ Sbjct: 176 KL-DIEYVRSEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLV 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + +N S+ + + D +++ + + L DV+ L+IG V+P ++ Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVADFVDIPLRLSDVLKLQIGDVLPIDRPDR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 A + +G + +C+ G Y +R+ IN Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324 >gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum centenum] gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 352 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 9/264 (3%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+++ S +F + + + W ++ + + L+ ++++ LLG Sbjct: 94 VEVTVQQIASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRS 153 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 + R + +E+ LA+R I + L S E T S Sbjct: 154 DPAPIDGRPYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERVETTPQFAVITR--S 211 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNK--SENQSEDLIDPFAR 233 N + + ++ L+IP TL ++ L+ + K ++ E + R Sbjct: 212 NNACISARFQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGRDSMWETHLKNELR 271 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 +T +V++ + + +L D++ K G + R A+L+ ++ E+G+ Sbjct: 272 RT---SVDLSAVLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRN 328 Query: 294 KNYTIRITDRINFDQKSLKNFLHK 317 N IRI + + + L + Sbjct: 329 GNVAIRIDADLGAQDEVIHGLLQR 352 >gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60] Length = 337 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 39/213 (18%), Positives = 90/213 (42%), Gaps = 20/213 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV ++NL G ++ R + E+++ +R +L + +++ + Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQR-------MLRLALDAYRDAWGAIF 175 Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 D++Y++ N N+ V T + + ++ F + IP + L+ L+ Sbjct: 176 KL-DVEYVRSEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLV 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + +N S+ + + D +++ + + L DV+ L+IG V+P ++ Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVANFVDVPLRLSDVLKLQIGDVLPIDRPDR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 A + +G + +C+ G Y +R+ IN Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324 >gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] Length = 359 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 25/257 (9%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 VD+ Y S FS S S ++S + + +L +++ LLG Sbjct: 81 VDVKYASIDQITFSEFQKSLNSPTFIVIFSSEAFSGSAILQMGLDLGYVIIDRLLGGPGN 140 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL- 176 T+ ++ R + +E + ++ A + +L++ S +E NLE+ L+ N + Sbjct: 141 TLEEI--RPPTEIEMNILRKESAVMLRMLSKSWSNIEEFDANLEN------LETNPQFVQ 192 Query: 177 ---SNEFVTTINMNMTIENVASSFVLIIPQETLLK-----TTLISLSSQNKSENQSEDLI 228 NE I +++TI+NV L P +L TT + +S +E E+L Sbjct: 193 VAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLEPLNDKLTTRMWTTSYRHTEEFKENL- 251 Query: 229 DPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 R++ L+ + I L KT L D + L++G VI L + I+ Sbjct: 252 ----RQSLLLSKLNLSAI-LGKTEIYLNDFLNLEVGDVIRLDSFYDEPIDLEIEERPIFK 306 Query: 287 CELGRVGKNYTIRITDR 303 +G+ Y+++I ++ Sbjct: 307 VNVGKSKGFYSVKIVEK 323 >gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] Length = 327 Score = 36.6 bits (83), Expect = 4.7, Method: Compositional matrix adjust. Identities = 56/276 (20%), Positives = 114/276 (41%), Gaps = 26/276 (9%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ V + + + + IHS + + +L + Sbjct: 62 FARVLTTHFSAQLRTYVQFTVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEVNP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCISTTQESS 157 N+ +L+ LLG E + ++ N L+ +E + L KR Q A ES Sbjct: 122 NIAYAMLDRLLGGPGEGMNKIEN--LTEIETRILTQLFKRAFVQYGAAW--------ESI 171 Query: 158 PNLEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +E Y D L+ N L NE V +++ +T+ V+ + + +P T L+ + Sbjct: 172 AEIEAEY--DDLEINPQFLQLVSPNETVILVSIYVTVGEVSGTLNVCLPFVT-LEPIIPK 228 Query: 214 LSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVVTLKIGQVIPFL 268 LSS + + +S D + +T + +D + L +T L +++ L++G + Sbjct: 229 LSSHFWMQQEKRKSADNQESEHMQTQLMGSIVDLKAVLGQTELSFGELLHLEVGDCLSLQ 288 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 R L + ++++ G GK+ +++ RI Sbjct: 289 TRTSDPVELFVDDRKMFKARPGLNGKHLALQVLQRI 324 >gi|330447962|ref|ZP_08311610.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492153|dbj|GAA06107.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 627 Score = 36.6 bits (83), Expect = 4.8, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 16/123 (13%) Query: 94 NFFIGCSNNLVITLL---ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N F+G + +V L E+L SH T Q RS +L + I ++ +N+ Sbjct: 339 NQFVGNMHQMVTRLRHVSESLNQQSHVTASQAEERS---ARIQLQQDEINMVATAINEMA 395 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + TQE + N E NT R S E VT N T N + + + QE TT Sbjct: 396 AATQEIASNAE----------NTARTSEETVTASNHGATQVNQSQQSISTLAQEVETATT 445 Query: 211 LIS 213 +IS Sbjct: 446 VIS 448 >gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105] gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105] Length = 348 Score = 36.6 bits (83), Expect = 5.0, Method: Compositional matrix adjust. Identities = 42/225 (18%), Positives = 93/225 (41%), Gaps = 23/225 (10%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV +++NL G ++ R + E+++ R + I + + P Sbjct: 120 SLVFAVIDNLFGGDGRFHTRVEGRDFTQTEQRIIARMLEVIREEFVKAWAPVFPLKP--- 176 Query: 162 DFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 +YL+ + + +N E V T + ++ + S + IP T+ + S Sbjct: 177 -----EYLRSEMHTQFANIATPSEIVVTTSFSIELGAGGGSLHICIPYSTMEPIRDLLYS 231 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 S + + + +K Q+ +D +L T T+ D++ L+IG VIP + Sbjct: 232 SMQGDQAEPDKRWVTMLKKQVQM-AEVDLVASLASTQLTVADIMELRIGDVIPI----EI 286 Query: 274 CAILSA--NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ A + +++C G G Y +++ + + +S + L+ Sbjct: 287 DKVIEARVDNVPVFNCSYGTSGGQYALKVEEVLAVSNESHADALN 331 >gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] Length = 336 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 39/220 (17%), Positives = 92/220 (41%), Gaps = 29/220 (13%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNL 160 NLV +++N+ G ++ R + E+++ I +LN + ++ +P Sbjct: 121 NLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRI-------IQGMLNVVFTEYAKAWAPVF 173 Query: 161 EDFYDIDYLKKNTN-RLSN-----EFVTTINMNMTIENVASS------FVLIIPQETLLK 208 + +++Y++ N + +N E V + + ++ + + + ++ P LL Sbjct: 174 K--LELEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYSMVEPIRDLLY 231 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 +T+ Q+ Q I +R+ V + + + TL+D+V +++G VIP Sbjct: 232 STM-----QSDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPLQ 286 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 E A + +G + C G + ++ + D+ Sbjct: 287 VSELLQA--TVDGVPVLECRYGTQNGQFAFKVDRFLGPDE 324 >gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17] gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17] Length = 331 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 46/259 (17%), Positives = 92/259 (35%), Gaps = 32/259 (12%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 D+S + Q KF +H+ + + LV L++N G Sbjct: 76 DVSTSGVQIMKFGEYVHTLYVPTSLNLCKIRPLRGTSLFVLDAKLVFKLVDNFFGGQGRH 135 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R + E ++ + +LNQ QE+ + LK N LS+ Sbjct: 136 -AKIEGREFTPTENRI-------VQMMLNQVFHDMQEAWQTV--------LKVNFEYLSS 179 Query: 179 EFVTTI-------------NMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNKSENQS 224 E ++ ++ ++ +P + ++ Q+ ++ Sbjct: 180 EVNPSMANIVSPSEVVVVSTFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDTD 239 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 E + ++V +++ I + +L++V K G +IP E ++ANG I Sbjct: 240 ERWVSALQEDIKTVSVAVNSTICRRHISLREVAKFKAGDIIPIEMAEHLT--VTANGIPI 297 Query: 285 YSCELGRVGKNYTIRITDR 303 Y+ LG +RI R Sbjct: 298 YTATLGTRDDKLALRIHGR 316 >gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9] gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium profundum SS9] Length = 348 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 94/218 (43%), Gaps = 21/218 (9%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I LV L+EN G ++ R + E+++ + +L +E Sbjct: 113 LITMEARLVFILVENFFGGDGRFHAKIEGREFTPTERRI-------VQMLLKLVFEDYRE 165 Query: 156 S-SPNLEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP + + +YL N ++N E + + ++ ++ F +++P ++++ Sbjct: 166 AWSPVMG--VEFEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPY-SMVE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIP 266 L + +S+ +D+ A + ++V ++ R L +L+D++ L+ G +IP Sbjct: 223 PIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIP 282 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 E A + Y ++G+ G N ++IT ++ Sbjct: 283 IDVPE--SATVFVEDLPTYRAKMGKSGDNIALKITQKL 318 >gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16] gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16] Length = 339 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 10/207 (4%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 NLV +++NL G ++ R + E+++ +R + A T P Sbjct: 124 NLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVH---PIET 180 Query: 162 DFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQN 218 ++ + K N + NE V T ++ + V + +P + LK L++ Sbjct: 181 EYIRSEMHPKFANVATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDE 240 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 K ++ + + + V + ++T+ +V+ ++ G V+P EK Sbjct: 241 KEVDKG--WVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEKVFG--K 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305 +G + C G + Y +R+ IN Sbjct: 297 VDGVPVMQCGFGTMNGQYALRVERMIN 323 >gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] Length = 339 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 45/261 (17%), Positives = 111/261 (42%), Gaps = 25/261 (9%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASL----SSWSSNFFIGCSNNLVITLLENLLGA 114 ++S + + ++ ++ +N V + ++ SS + I S L+++L++ +LG Sbjct: 79 ELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPDSSKNPPLLINASMTLMLSLIDRMLGG 138 Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174 + + + + +E L +R I I L S S NL +++ L++N + Sbjct: 139 VGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKDSWS----SYINLN--FELSRLEENPS 192 Query: 175 RLS----NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-------SLSSQNKSENQ 223 +E + + +++ ++ + + IP L+ I ++ + S++ Sbjct: 193 MFQEIGVDETIVIVVLDVDMKECSGRLNVCIPGNLLMNIFDIMDKRKHSAMGDEANSQDN 252 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 +++++ ++ + ++ TL DV L +G VI + + L G+ Sbjct: 253 KQEIMNSIKAS----DLLVRAQVGESMITLDDVYNLHVGDVINLGTPKDSDVQLYVEGQP 308 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + +LG +N +RI D + Sbjct: 309 WFRGQLGVHKRNVAVRIEDHV 329 >gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 107/266 (40%), Gaps = 40/266 (15%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 DI+ TS + + S + F+ S+ N + + +LV +++ LLG + + Sbjct: 81 DITLTSVDQMTYGEFLMSLPDPTSFNIISMIPMEGNAVLEINPSLVFPIVDKLLGGTGK- 139 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTTQ------ESSPNLEDFYDIDY 168 P R L+++E+ + + I V Q I + E+SP++ Sbjct: 140 -PLFQTRELTSLEQHIMDGILGLILKDLEEVWRQIIPNIRLKKELSENSPHIIQIVS--- 195 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN-------KSE 221 NE V + + V L IP +L+ L +SS + + Sbjct: 196 --------QNEVVILVVCEVKFGEVLGMMNLCIPA-IVLEPVLGKISSSDWLIGAKKGLQ 246 Query: 222 NQSEDLIDPFARKTYQLN-VNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + ED I + LN + T I L K T++DV+ L+ G ++ F ++ + Sbjct: 247 GEKEDEI------MHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIH 300 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 N K+ + E+G +G ++IT I Sbjct: 301 FNNKQKFLGEVGTLGVKKAVKITQFI 326 >gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] Length = 376 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 32/240 (13%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++ TS +S I S + F+ + S N + + +++ +++ LLG E Sbjct: 102 VEVKLTSVDQLTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGGGKE 161 Query: 118 TIPQLYNRSLSTVEKKLAKRT---------IAQISAVLNQCISTTQESSPNLEDFYDIDY 168 + P + R L+ +E L R IA + + Q ES+P L Sbjct: 162 SSP-VSRRPLTEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVESNPQLVQIVP--- 217 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP-------QETLLKTTLISLSSQNKSE 221 NE + I+ +TI +V L IP L T + + SE Sbjct: 218 --------PNEVIVLISFELTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSE 269 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + L + + +V + + K T +D++ L++G VI + +S NG Sbjct: 270 ESRQAL----STQIDGASVEVGVTLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNG 325 >gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 350 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 28/217 (12%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV +++NL G + + R + E+++ +R + L S + P Sbjct: 122 SLVFMVVDNLFGGDGRFLTKSEGREFTHTEQRIIRRLLG---LALEAYQSAWKSVYP--- 175 Query: 162 DFYDIDYLK-------KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 +IDYL+ N NE V ++ + N+AS F +++P L+ L SL Sbjct: 176 --LEIDYLRSEMQAKFANITSSPNEIVINSTFHLEVGNLASDFNIVMP--YLMIEPLRSL 231 Query: 215 ------SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S E Q + A + Q + + + V+ LK+G V+P Sbjct: 232 LNGPLNDSHPDEERQWGKRM---ASEIKQSQIELIADFAGIDLCIGQVMALKVGDVLPIE 288 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 E A +G + CE G +++ + I+ Sbjct: 289 LPETVVA--RVDGVPVMRCEYGSRNGQRALQVKELID 323 >gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] Length = 337 Score = 36.2 bits (82), Expect = 6.3, Method: Compositional matrix adjust. Identities = 50/285 (17%), Positives = 102/285 (35%), Gaps = 25/285 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + E D +Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVME--------VDFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ +L+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMSLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 LK+G ++P + L +++ E G N ++IT Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] Length = 322 Score = 36.2 bits (82), Expect = 6.4, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 E V + M + IE + F PQ L I S + E + D + +K ++ Sbjct: 188 EKVIVVEMILDIEGLEVPFSFAFPQMMFLPLKDIIFSETSSLEIPA-DWKENILKKLSKV 246 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYT 297 +N ++ +++++ L++G I L+ +K +I L GK ++ +LGR K Y Sbjct: 247 ELNFTLELSRFTMLVEELLNLEVGSDI-ILNVKKDDSINLMVEGKPKFTAKLGRYDKKYA 305 Query: 298 IRITDRINFDQ 308 I DR+ ++ Sbjct: 306 AMIVDRVKGEE 316 >gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] Length = 367 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 53/273 (19%), Positives = 111/273 (40%), Gaps = 28/273 (10%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S + + S F+ S+ N + + ++ +++ LLG + E Sbjct: 79 VEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGE 138 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY-DIDYLKKNTNRL 176 +R L+ +E L + A+L + +ES + D Y +++ + + N + Sbjct: 139 GFEA--SRELTDIEVNL-------LDAILRMMMQRLKESWSMITDMYPNVEAKESSPNVV 189 Query: 177 S----NEFVTTINMNMTIENVASSFVLIIPQ---ETLL-----KTTLISLSSQNKSENQS 224 NE V + M + + N + + P E +L + ++ +S KS N+ Sbjct: 190 QIVSQNEIVIMVVMEIIVGNSSGMINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKE 249 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + A Y+ + ++ + + LK G ++ AI++ + KE+ Sbjct: 250 LKTLIGRAEVLYE------AILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTIDKKEV 303 Query: 285 YSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + E+G +IRI + I D+ +KN L + Sbjct: 304 FLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 336 >gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM 6578] Length = 341 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/72 (23%), Positives = 36/72 (50%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + VN+ + ++D+++++ G VI R K +L + + C GRVGK Sbjct: 259 VEVNLVVEVGSMNLKMRDILSIQKGDVIMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLA 318 Query: 298 IRITDRINFDQK 309 +++ ++I Q+ Sbjct: 319 VQLVEKIEESQE 330 >gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda] Length = 337 Score = 35.8 bits (81), Expect = 7.9, Method: Compositional matrix adjust. Identities = 39/213 (18%), Positives = 89/213 (41%), Gaps = 20/213 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV ++NL G ++ R + E+++ +R +L + +++ + Sbjct: 123 SLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQR-------MLRLALDAYRDAWGAIF 175 Query: 162 DFYDIDYLKK-------NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLI 212 D+ Y++ N N+ V T + + ++ F + IP + L+ L+ Sbjct: 176 KL-DVKYVRSKIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIGTLRELLV 234 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + +N S+ + + D +++ + + L DV+ L+IG V+P ++ Sbjct: 235 NPPLEN-SKQEDQHWRDTLSKQVQHSELELVANFVDVPLRLSDVLKLQIGDVLPIDRPDR 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 A + +G + +C+ G Y +R+ IN Sbjct: 294 LVA--NVDGVPVLTCQYGCYHGQYALRVEKMIN 324 >gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] Length = 335 Score = 35.8 bits (81), Expect = 8.3, Method: Compositional matrix adjust. Identities = 45/240 (18%), Positives = 96/240 (40%), Gaps = 15/240 (6%) Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I S + V + S N + + +LV +++ +LG E I + R L+ Sbjct: 90 YDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRK--PRDLTD 147 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E+ + +R + +I L + ST + E + + + V + + + Sbjct: 148 IERTVVERVMLKILEHLEESWSTVVDIRFRFESMESNPFFVQICP--GTDMVLLVTLKVQ 205 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQN-------KSENQSEDLIDPFARKTYQLNVNI 242 + L IP +++ + LSSQ+ K+ + ++I+ + ++ V + Sbjct: 206 VGEAEGIMNLCIPY-FVMEPMIDKLSSQHWFASTGRKNVEGAREIIEA---RLSKVAVPV 261 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + +L DV+ L+ G VI + L + + CE G K+Y R+ + Sbjct: 262 ALELGHTVLSLGDVLQLREGDVIRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLE 321 >gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum] gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 362 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 16/251 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V++S S +F ++S + + W + + + L+ ++++ LLG Sbjct: 109 VEVSLDQISSVRFGDYLNSIPLPAMLAVFKAEEWDNYGLMVIDSALIYSIVDVLLGGRRG 168 Query: 118 TIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-- 174 T ++ R +T+E+ L +R + VL+ + SP + D L+ N Sbjct: 169 TAAMRIEGRPYTTIERNLVER---MVHVVLSDLSAAFDPLSPVT---FRFDRLETNPRFA 222 Query: 175 ---RLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLID 229 R +N V + + + +E+ L+IP TL ++ L+ + K S Sbjct: 223 TIARQANAAV-LVKLRIDMEDRGGRLELLIPYATLEPVRELLLQMFMGEKFGRDSI-WET 280 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + +V++ ++ +L DV+ +IG + L ++ + Sbjct: 281 HLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLLNVAPDDTIELRCGDVPMFLGRM 340 Query: 290 GRVGKNYTIRI 300 GR G N +RI Sbjct: 341 GRKGGNIAVRI 351 >gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 35.8 bits (81), Expect = 8.8, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 15/191 (7%) Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 V S + + + S ++ TL+E +LG + ++ R + +E L K+ + Q Sbjct: 102 VLSIINFTPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLMRQ 159 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL----SNEFVTTINMNMTIENVASSF 197 + ++ E P L D ++ N+ N+ V + +N+ I +V Sbjct: 160 VINLMVDPWENVIELQPKL------DKIETNSQFAQIVSPNDTVALVTLNLKIGDVEGMM 213 Query: 198 VLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + IP E +L L N S+ +E ++ + VNI ++ T+K Sbjct: 214 NICIPHIVIEPILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVK 273 Query: 255 DVVTLKIGQVI 265 D + L+IG VI Sbjct: 274 DFLELQIGDVI 284 >gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens GS-15] gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens GS-15] Length = 327 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+I S KF +H+ + I + LV T+++ +LG + Sbjct: 75 VEIKKVGAASFKFDDFLHTMPSPVAMAVYKADPLKGAALIAFDSTLVFTIVDCILGGTGS 134 Query: 118 T-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + +P + NR +++E +L ++ + + A L + Sbjct: 135 SVVPTVGNRMFTSIELRLVQKIVMDVLADLEKA 167 >gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzicola BLS256] Length = 337 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 25/285 (8%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L++ L + + DL S KF+ +HS + Sbjct: 49 GRMPTLEMVNERFARLWRIGLFNLIRRSADL----SVRGIDLVKFNEYMHSLYVPTNLNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV T+++N G ++ R + E ++ + + Q A Sbjct: 105 IRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D++Y+ N E+V ++ +E + Sbjct: 165 LKEAWAPVMD--------VDLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHI 216 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN---VNIDTRINLKKTTLKDV 256 +P L + + N +D + R+ QL+ V + + + K+ +L+ + Sbjct: 217 TLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLRE--QLDTAEVTLSSVLASKRMSLRQL 274 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 LK+G ++P + L +++ E G N ++IT Sbjct: 275 TGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVKIT 317 Searching..................................................done Results from round 2 >gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 318 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI Sbjct: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP Sbjct: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 Query: 301 TDRINFDQKSLKNFLHKR 318 TDRINFDQKSLKNFLHKR Sbjct: 301 TDRINFDQKSLKNFLHKR 318 >gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 103/316 (32%), Positives = 169/316 (53%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H++ N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L + D + +EF Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LI+PQ LLKT + + ++ S + + + + +V Sbjct: 181 AAAINMSLTLAGIVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEARIRLQDLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 172/316 (54%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV + Sbjct: 1 MTMSNASHDKPAMDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L + +D + +EF Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LI+PQ LLKT + + ++ +S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 171/316 (54%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + + P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV + Sbjct: 1 MTMSNASHDKPAMDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L Y D + +EF Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LI+PQ LLKT + + ++ + S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42] gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42] Length = 316 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 168/316 (53%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +FLP I K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY C+ G +H++ N A+L +WS N + C N VITL+E+LLGA+ +TI Sbjct: 61 SYLGCEIGYKNHLVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R LS +E LA +I+ VL ++ P+L + D + +EF Sbjct: 121 EPAERLLSVIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F LIIPQ LLKT + + ++ S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512] Length = 314 Score = 335 bits (859), Expect = 5e-90, Method: Composition-based stats. Identities = 103/310 (33%), Positives = 169/310 (54%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ Sbjct: 5 SHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCE 64 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 G +H++ N A+L +WS N + C N VITL+E+LLGA+ ETI + +R Sbjct: 65 IGYKNHLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRL 124 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186 LS +E LA +I+ VL ++ P+L + D + +EF INM Sbjct: 125 LSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINM 184 Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++T+ + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI Sbjct: 185 SLTLAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARI 244 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N Sbjct: 245 RLQDLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNS 304 Query: 307 DQKSLKNFLH 316 D + +++ ++ Sbjct: 305 DDELIRHLMN 314 >gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84] gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84] Length = 314 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M QS H + + P+L A+LTG LGD T+ K+ ++ G +Y +FLP I K + LDV + Sbjct: 1 MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 Y C+SG S ++ N SL +WS NF +GC V+TL+E+LLGA ETI Sbjct: 60 GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 R LS +E L+ +I+ VL ++ T P L+ Y+I+ +++F Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I M +++ S V+I+PQ LL+T + + ++N S + + + + V Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSASTGA-WAEQLNEQVRRSQV 238 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ RI L+ TL + L +G VIPF+ +SAN K++Y CE GR G+NYT+R+ Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + L++ ++ Sbjct: 299 KDTVNSDDELLRHLMN 314 >gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 170/316 (53%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + + P LLA+LTG LGDK + KI SS G +Y +F P + K + L+V + Sbjct: 1 MTMSNASHDKPAMDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N +L +WS N I C N VITL+E+LLGA+ +TI Sbjct: 61 NYLGCEIGYKNHLIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIE 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +R LS +E LA +I+ VL ++ P+L + ++ + +EF Sbjct: 121 EPADRLLSIIEMDLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 INM++T+ + S F L++PQ LLKT + + ++ S + + + + +V Sbjct: 181 AAAINMSITLAGIVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 ++ +I L+ TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ Sbjct: 241 TLEAKIRLQDLTLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRV 300 Query: 301 TDRINFDQKSLKNFLH 316 D +N D + +++ ++ Sbjct: 301 KDTMNSDDELIRHLMN 316 >gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 208/317 (65%), Positives = 254/317 (80%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++ Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300 Query: 301 TDRINFDQKSLKNFLHK 317 DRINFDQ+SL+NFLHK Sbjct: 301 QDRINFDQESLRNFLHK 317 >gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4] gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4] Length = 319 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 169/305 (55%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ LLARLTG LGD K++EK+ G LY +FLP +F + +L +++ Y +SG Sbjct: 15 PMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLMR 74 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 +I S +NFV + SL +WS NF + C N VITL+E LLG E I + R LS +E Sbjct: 75 DLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNIE 134 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 LA +I+ VL ++ T P E ++ + + EF ++M++ + Sbjct: 135 LDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKLG 194 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + S F LIIPQ+TLLKT + + S+N+ ++ + A + + V ++ RI+L+ Sbjct: 195 KITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQSL 254 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 +L V L G VIPFL + +SANG+++Y+CE GR G +YT+R+ + D + L Sbjct: 255 SLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSELL 314 Query: 312 KNFLH 316 ++ + Sbjct: 315 RHLMR 319 >gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti] Length = 315 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNDLIAALGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium medicae WSM419] Length = 315 Score = 305 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 157/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + N LLAR+ G LGD K I++++ L ++ + LP + + + DV I+Y Sbjct: 4 NTASNIHAFDKRLLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + ++ + + SL +W ++F IGC + ++I L+E LLGA I + Sbjct: 64 FRAGLRNELVAGLGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + + +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT +S K +N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTIARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti BL225C] Length = 315 Score = 305 bits (780), Expect = 7e-81, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium meliloti 1021] gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium meliloti AK83] Length = 315 Score = 305 bits (780), Expect = 8e-81, Method: Composition-based stats. Identities = 92/312 (29%), Positives = 158/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58] Length = 319 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 14 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 73 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 74 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 133 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 134 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 193 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 194 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 253 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234] Length = 315 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 157/312 (50%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N LLAR+TG LGD KTI + + LG+++ + LP++ K++ D+ I Y Sbjct: 4 STDSNVYAFDKKLLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + G + +I E + S SL +W + F IGC + ++I L+E LLGA I + Sbjct: 64 VKMGFRNELIADLGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R+LS +E +A +I+ + + P + ++ L + + +I Sbjct: 124 RALSKIEIDVAVPVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + V S+F +IIPQ LLKT ++ + ++E+ D + + + V ++ Sbjct: 184 DMTFGLGPVLSTFSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEA 243 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI L+ TL + L+ G VIPF + ++ANG+++Y CE GR G YT+R+ D Sbjct: 244 RIQLESLTLDTISRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTH 303 Query: 305 NFDQKSLKNFLH 316 +Q L++ + Sbjct: 304 GSEQDILRHIMS 315 >gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM Length = 321 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315 Query: 311 LKNFL 315 L++ + Sbjct: 316 LRHLM 320 >gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens] gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens] Length = 321 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG + Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I+ VL ++ ++ ++ + ++ + TI M + I Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315 Query: 311 LKNFL 315 L++ + Sbjct: 316 LRHLM 320 >gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3] gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3] Length = 319 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 2/305 (0%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + LLA+LTG L D+KTI K+ S +G+LY +FLP IF + + +D+ Y +SG + Sbjct: 14 IDTSLLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTD 73 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + NF + SL +W NF + N VI L+E +LGA+ +TI + RSLS +E Sbjct: 74 LIANIGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIEL 133 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 LA + +I VL ++ ++ + + ++ + T+ M + I Sbjct: 134 DLAAMVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGK 193 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 V+S F LI+PQ LLKT++ + + ++ + + +D + + + V ++ RI L+ T Sbjct: 194 VSSEFALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLT 253 Query: 253 LKDVVTLKIGQVIPFLH--REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D + Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313 Query: 311 LKNFL 315 L++ + Sbjct: 314 LRHLM 318 >gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum SL003B-26A1] Length = 314 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 128/315 (40%), Gaps = 28/315 (8%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 I + P+ P+L R+ D ++K IS + Sbjct: 25 ISVDRLPMLPVLFDRMARVFADA---------------------MRQKSTSPSYISVSCI 63 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + ++ ++ N + + W + +G + + T+++ L GA P R Sbjct: 64 ENERIGDVLDEYEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEER 123 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTI 184 S S +E ++A+ + L + S E++ +E +D+ R +N V Sbjct: 124 SFSNIETRIARSVFEVAAKALQESFSPIAETTLKIERVESRMDF--AVVGRRNNPAVVA- 180 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + +++P TL L+ L + S S + + F + + V + Sbjct: 181 RLLLQAIGRGGEIFVVMPHSTLNPLRQRLSQVLSGEMSG-RDKQWTQHFQTEIQRTEVRL 239 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ++ TL ++ L++GQ+I ++ L N + I++C LG++ +YT+++ D Sbjct: 240 QAVLEERELTLGEIANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVED 299 Query: 303 RINFDQKSLKNFLHK 317 I+ ++ + + L + Sbjct: 300 LIHLEKDIVDDLLSR 314 >gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica DFL-43] Length = 315 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 2/313 (0%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + +T P LL R+ G GD IE SL L + F+ ++ + Sbjct: 4 SAKDSKTDTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSAR 63 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 Q G ++ F ++ VF + WS + C LVI ++E LLG S Sbjct: 64 PGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELD 123 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R LS +E ++ Q++ L + S + +D + + + Sbjct: 124 IAARPLSGIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKPM-LDIPEAEDDPKPDFHA 182 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 I + + +V + LI+PQ LLKT I+ S +N +D + + + +N Sbjct: 183 AAITLELQFGSVVTPLTLILPQSILLKTKPIT-SKKNAPNAVDDDWAERLNARVSRSQIN 241 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + L + ++ L++G +I F LSANGK +Y+C LG+ G Y +++ Sbjct: 242 LQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVE 301 Query: 302 DRINFDQKSLKNF 314 D+ +F Sbjct: 302 GDAGPDENWRSDF 314 >gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii DFL-11] Length = 319 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 126/315 (40%), Gaps = 26/315 (8%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 I + P+ P++ R+ + + ++K IS + Sbjct: 29 ISVDRLPMLPVVFDRMAR---------------------LMADVMRQKSPSPSYISVSYV 67 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + ++ F+ N + + W + +G + + TL++ L GA P R Sbjct: 68 ENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDEER 127 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 S +E ++A+ + L + + E++ +E + SN Sbjct: 128 PFSNIETRIARTIFEIAAKSLAESFAPIAETTLKIERIES--RMDFAVVGRSNNPAVVGR 185 Query: 186 MNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + +++P TL L+ L + S S + + F + + V ++ Sbjct: 186 LLQQAIGRGGEVFVVLPHATLNPLRQALSQVLSGEMSG-RDKQWTQHFHNEIQRTEVKLE 244 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + ++ L ++ LK+GQVI ++ L+ N + I++C+LG++ +YT++I + Sbjct: 245 AILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQLGQLDGSYTLQIEEL 304 Query: 304 INFDQKSLKNFLHKR 318 I+ ++K L + L R Sbjct: 305 IHEEEKDLFDDLRNR 319 >gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614] Length = 319 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 131/316 (41%), Gaps = 28/316 (8%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 I + P+ P++ R+ + ++K IS + Sbjct: 29 ISVDRLPMLPVVFDRMAR---------------------LMADAMRQKSPSPSYISVSYV 67 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 ++ + ++ F+ N + + W + +G + + TL++ L GA P R Sbjct: 68 ENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDDER 127 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTI 184 S +E ++A+ + L + + E++ +E +D+ R +N V Sbjct: 128 PFSNIETRIARTMFEVAAKALAESFAPIAETTLKIERIESRMDF--AVVGRRNNPAVVA- 184 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + +++P TL L+ L + S S ++ + F + + V + Sbjct: 185 RLLQQAIGRGGEVFIVMPHSTLNPLRQRLSQVLSGEMS-SRDKQWTQHFHNEIQRTEVKL 243 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + + ++ +L D+ L++GQVI ++ L+ N + +++C+LG++ +YT++I + Sbjct: 244 EAILEEREMSLGDLANLRVGQVIELQATARSPVTLACNDQPVFTCQLGQLNGSYTLQIDE 303 Query: 303 RINFDQKSLKNFLHKR 318 I+ ++K L + L R Sbjct: 304 LIHEEEKDLFDDLRNR 319 >gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] Length = 344 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D S++ S + +SG Sbjct: 59 DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 97 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 98 RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 157 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 158 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 215 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L E+ + D + A + + V + + Sbjct: 216 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 274 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN Sbjct: 275 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 335 EKEGGHGLL 343 >gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 335 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D SS+ S + +SG Sbjct: 50 DRLPMLSVVFDRLATACSDAAKHFAASSTF---------------------YSLSGVESG 88 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V + W + +G + + T++E L G+ P R+ S Sbjct: 89 RFGEFLDAYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPPVEDERTFS 148 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 149 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-TETRMEFAVIGRRSNKAVQA-KFLL 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L+ E+ + D A + + V + + Sbjct: 207 QALNRGGEMFLIIPQ-TVLNPLRPALAKVLTGESAARDPRWAQQIAAEVQKTTVRLRAVL 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ Y +R+ D IN Sbjct: 266 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGAYVLRVEDAINP 325 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 326 EKEGGHGLL 334 >gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens AM1] Length = 344 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D S++ S + +SG Sbjct: 59 DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 97 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 98 RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 157 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 158 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 215 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L E+ + D + A + + V + + Sbjct: 216 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 274 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN Sbjct: 275 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 334 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 335 EKEGGHGLL 343 >gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 340 Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D S++ S + +SG Sbjct: 55 DRLPMLSVVFDRLATACSDAAKHLAASTTF---------------------YSLSGVESG 93 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 94 RFGEFLDAYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFS 153 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L +++ LE + R SN+ V + Sbjct: 154 AIELRIAQMVFEQVGKALESSFGLVSQTAFRLER-METRMEFAVIGRRSNKAVQA-KFLL 211 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N LIIPQ T+L +L E+ + D + A + + V + + Sbjct: 212 QALNRGGEMFLIIPQ-TVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVL 270 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + TL ++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN Sbjct: 271 EERHLTLGEIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINP 330 Query: 307 DQKSLKNFL 315 +++ L Sbjct: 331 EKEGGHGLL 339 >gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 303 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 28/314 (8%) Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66 + P+ ++ RL D +L +L + S S + Sbjct: 15 SPDRLPMLNVIFDRLATACAD---------NLKHLAV------------SPIFYSLMSVE 53 Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126 SG F ++ ++ N V W + +G + V T++E LLGA P R+ Sbjct: 54 SGLFGDLLEPYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPPVEEARN 113 Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTIN 185 S++E ++A+ T QI L + ++ LE +D+ R SN+ V Sbjct: 114 FSSIELRIAQMTFEQIGKALEAAFALVSVATLKLERTETRMDF--AIIGRRSNKAVAA-K 170 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243 + N LIIPQ +L SLS E+ S D + + + V + Sbjct: 171 FLLQALNRGGEMFLIIPQA-VLNPMRQSLSKVLTGESTSRDPRWEKQISTEVRKTEVTLR 229 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TL ++ LK+GQV+ ++ L N + ++ C++G+ Y +R+ D+ Sbjct: 230 AVLEERTLTLGEIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQVGQANGAYVLRVEDQ 289 Query: 304 INFDQKSLKNFLHK 317 I+ D++ + L + Sbjct: 290 IDQDKEFMDGVLAR 303 >gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099] gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti MAFF303099] Length = 315 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 128/312 (41%), Gaps = 9/312 (2%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + + L K ++ + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + F + + S+ S + + ++ L G ET Sbjct: 62 VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ Q++ LN + + L + + + L + I Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALNGSGRRSLD--LRLPVPRAMSGTEAKRHVLRDGAALRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ + + + +PQ +L + + S+ S + F+ + + V ++ Sbjct: 180 VLGISTPADSGTVTVTMPQRIVLASRDSAASTAGDDHGPS--WRERFSEEVMRSTVALEA 237 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + TL D+ +L++GQVI F ++ A LSA G+ ++ CE G++G+NYT+RI Sbjct: 238 TMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRIRHPF 297 Query: 305 NFDQKSLKNFLH 316 + Q + + Sbjct: 298 DAGQDFIDGLMP 309 >gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571] Length = 309 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 113/311 (36%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL + ++ S +S ++G Sbjct: 23 DRMPMLHVIFDRL---------------------GTLCAEGLRQLAASQAFYSLSSIETG 61 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + ++ ++ V + W S+ +G + V T++E L GA P RS S Sbjct: 62 RIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPPVDDERSFS 121 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++++ Q+ L+ + ++ E + N T + Sbjct: 122 NIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQET--RMDFAVIGRRNNLAVTAKFLL 179 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N +IIPQ L +L+ +E D + + V + + Sbjct: 180 QALNRGGEMFVIIPQSALTPM-RQALARTTPAETSGRDPIWTKQIRDEVNRTQVKVRAIL 238 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + L ++ K+GQV+ +T L + + ++ C LG+ Y +R+ ++IN Sbjct: 239 EERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQAEGAYVLRVEEQINL 298 Query: 307 DQKSLKNFLHK 317 +Q+ + + L + Sbjct: 299 NQEFVDDILPR 309 >gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 311 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 113/309 (36%), Gaps = 28/309 (9%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P+ ++ ++T + + S + S + S Sbjct: 28 PMLHVIFDQMT---------------------NLCAEALRSMSPSQSYFSLSGVGSDRLS 66 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 I+ ++ + + +W + IG + + T++E L GA P R S VE Sbjct: 67 DIVDRYEGEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVE 126 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD-IDYLKKNTNRLSNEFVTTINMNMTI 190 +A+ + L S + + LE +DYL RL+N V N+ + Sbjct: 127 MHVAQALFERFGKALQSSFSRASDVNFTLERVETRMDYLA--VGRLNNMAVCA-NILLQG 183 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINL 248 + ++IP L +LS E+ S D + + V + + Sbjct: 184 LDRGGEMFIVIPHAA-LNPIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEE 242 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + TL +V +GQVI T L N + ++ C+LG++ Y++++ + + + Sbjct: 243 RPFTLGEVAGFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKR 302 Query: 309 KSLKNFLHK 317 + + L + Sbjct: 303 EFIDGILSR 311 >gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 275 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 105/279 (37%), Gaps = 7/279 (2%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + S + S + S I+ ++ + + +W + IG Sbjct: 1 MTNLCAESLRSMSPSQSYFSLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDR 60 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + + T++E L GA P R S VE +A+ + L S + + L+ Sbjct: 61 DFIYTMIELLFGADGAEPPLDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLD 120 Query: 162 DFYD-IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +DYL R +N V+ + + + ++IP L +LS Sbjct: 121 RVETRMDYLA--IGRPNNMAVSAQILLQGL-DRGGEMFIVIPHAA-LNPIRTALSQIVTG 176 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E+ S D + + V + + + TL +V +GQVI T L Sbjct: 177 ESASTDPNWSRQLHSEIQRTEVVLRAVLEERPFTLGEVAKFHVGQVIKLNATPNTMVRLE 236 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 N + ++ C++G++ Y++++ + + ++ + L + Sbjct: 237 CNNQRLFWCQMGQLNGAYSLQVKESADQKREFIDGILSR 275 >gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 315 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 116/301 (38%), Gaps = 4/301 (1%) Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75 +++ RL G G+ + ++ L K + + V + + + + Sbjct: 13 LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72 Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135 + F + S+ S + + ++ L G + R LS +E ++ Sbjct: 73 RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 Q++ LN + + L + + L + I + ++ + Sbjct: 133 TMVFQQVAQALNGSGKRSLD--LRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 + + +PQ +L + ++ + S F+ + + V ++ + L + TL D Sbjct: 191 TVTVTMPQRVVLASRDGAVPVSDDDHGPS--WRARFSEEVMRSTVALEATMPLARLTLGD 248 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + +IG VI F ++ A LSA GK ++ CE G++G+NYT+RI + Q + + Sbjct: 249 LAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDFIDGLM 308 Query: 316 H 316 Sbjct: 309 P 309 >gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 309 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 113/279 (40%), Gaps = 5/279 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 F + V S ++ +S +F I+ ++ N + W S+ +G Sbjct: 34 RVATFCADQLRHFAASPVYFSLSNVESQRFGDILEPYESNAIAGIFQAPEWDSHILVGFD 93 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + + T++E LLG+ P RS S +E ++A+R Q+ + + ++ L Sbjct: 94 RDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIAQRLFEQVGRAVQSAFALVADTPFKL 153 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 E ++ R +N+ V + N ++IPQ +L SL+ Sbjct: 154 ER-TELRMDFAVIGRRNNQAVAA-KFLLQALNRGGEMFIVIPQS-VLNPMRQSLARILVG 210 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E + D A + + V + + K L ++ L +GQV+ ++ L Sbjct: 211 ETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALGEIADLAVGQVLELRATPRSRVKLV 270 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 N ++++ C++G+ +R+ I+ DQ+ + + L + Sbjct: 271 GNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDVLAR 309 >gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium opportunistum WSM2075] Length = 315 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 122/312 (39%), Gaps = 9/312 (2%) Query: 10 TSPLHP-----ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 TSP P +++ RL G G+ + ++ L K + + V + + Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + +NF + + S + + ++ L G + Sbjct: 62 VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R LS +E ++ +++ LN + L + ++ + L + I Sbjct: 122 RDLSPLEADVSTMVFQEVAQALNGSGQRS--LELRLPAPRAMSGIEARRHVLRDGAAIRI 179 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + ++ + S +++PQ +L S+ S F+ + + V ++ Sbjct: 180 VLGISTPVDSGSITVMMPQRIVLAGRDGIASASEADPGTS--WRARFSEEVMRSTVALEA 237 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L + TL D+ L++GQVI F ++ A L A G+ ++ CE G++G+NYT+RI Sbjct: 238 TMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYTVRIRHPF 297 Query: 305 NFDQKSLKNFLH 316 + Q + + Sbjct: 298 DAGQDFIDGLMP 309 >gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110] gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 5/279 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + S + + II ++ N V + W S I Sbjct: 38 RMAASCTDSLQPMAGTPCYFSVNGITNDRVGDIIKDYEANAVAAVLYAEQWDSRIIIMLD 97 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V T++E + G+ P RS S +E +L + + + L + T + + Sbjct: 98 RDFVFTMVEAMFGSDGAEPPLDVERSFSNIEIRLVQALFERFAKALQSAFAGTSNVTFRV 157 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 E R N + M + LIIP L L+ S Sbjct: 158 ERVET-AMASLAIGRSGNMSICANIM-LQALYRGGQMFLIIPHSA-LNPLRQKLAHVVVS 214 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + ++ D + + ++ V + ++ K TL DVV ++GQV+ +T A L Sbjct: 215 DGRASDPRWREQMESEVHRTEVTLSAVLDEKMVTLGDVVKFQVGQVLELEATPRTLARLE 274 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +N + ++ C++G++ Y +++ D ++ ++ + + L + Sbjct: 275 SNNQVLFWCQIGQLDGYYAMQVADPVDQKREFVDDILSR 313 >gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp. indica ATCC 9039] Length = 313 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 111/307 (36%), Gaps = 24/307 (7%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ R+ + + ++ + +S + Sbjct: 27 DRMPMLHVIFDRMVAQCSE---------------------SLRQYSAAPAVFTVSSIGTE 65 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + I+ +++ N V + + +W S +G + TL+E G P + R LS Sbjct: 66 RIGDILDAYENNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLS 125 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E KLA+ + L ST E+ E L N F +N+ Sbjct: 126 NIEIKLAQTIFDLLPKALQTSFSTISETVFKFERLET--KLDFAVIAPRNTFGFITRINL 183 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I ++IPQ +L N + + + + V + I Sbjct: 184 RILGRHGEMFVVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIE 243 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L D LKIGQV+P K+ A L N + ++ C++G+ YT+R+ D I+ + Sbjct: 244 DSHFVLGDFTELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQE 303 Query: 308 QKSLKNF 314 + ++ Sbjct: 304 KDFIEGI 310 >gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti] Length = 258 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 125/254 (49%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 ++G + +I + + + SL +W ++F +GC ++I L+E LLG + +I + Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPP 123 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 RSLS +E +A ++I+ VL ++ P + Y+ K L + F +I Sbjct: 124 RSLSKIEIDVALPVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 +M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++ Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243 Query: 245 RINLKKTTLKDVVT 258 RI L+ TL + Sbjct: 244 RIRLESLTLDTLSR 257 >gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 321 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 127/311 (40%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ R+ + D T+ +++++ YL S + Sbjct: 35 DRLPMLHVVFDRMARQYID--TLRQMAATAPYLA-------------------VQSVSNE 73 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + +++ V + W + +G + +++E LLG E P L +RSL+ Sbjct: 74 RIGDALEQYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLT 133 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 VE++LA R + + L ++S +E + T R SN V M Sbjct: 134 NVEQRLAYRMFEEAATALETAFEAIADTSLKVERLEN-RMEFAQTGRKSNPCVLA-KMTA 191 Query: 189 TIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I +IIPQ L L+ L + S + F ++ + V + + Sbjct: 192 EIIGREGEIFIIIPQSVLNPLRENLTQVLSGE-VAGRDTRWTKQFQQEVQRTEVKLTAIL 250 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ TL++V ++G V+ KT L N + +++C LG+V +YT+R+ + I Sbjct: 251 EEQRMTLEEVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQ 310 Query: 307 DQKSLKNFLHK 317 + + L + L Sbjct: 311 EGELLDDILSN 321 >gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC 700345] Length = 342 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + E Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMEVQ-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID I K TL++V+ K G VIP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIVEHKLTLREVLEFKAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL Y C++G+ N ++I ++I + Sbjct: 287 H--IILKVEDLPTYRCKMGKAKDNLALKICEKIPRPETVKTEL 327 >gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12] Length = 343 Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTGLITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D+ A + ++V ID I ++ TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDTQDTDMRWSLALKDEIMDIDVGIDATIVEQQITLKDVMEFKAGDIIPVELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +L Y C+LG+ N +RIT++I + Sbjct: 288 H--IVLRVEDLPTYRCKLGKTRDNLALRITEKIPRPETVKSEL 328 >gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3] gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3] Length = 342 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 99/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID + + TL+DV+ K G VIP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATVVEHQVTLRDVLEFKAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL Y C++G+ +N ++I ++I + Sbjct: 287 H--IILKVEDLPTYRCKMGKTKENLALKICEQIQRPETVKSEL 327 >gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908] Length = 342 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + + I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFNPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVISSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + +NV +D + + TLKDV+ LK G +IP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALKDEIMDVNVGLDATVVEHQITLKDVMELKQGDIIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL + C+LG+ N +R+ +I + + Sbjct: 287 H--IILRVEDLPTFRCKLGKARDNLALRVIQKIPRPETAKSEL 327 >gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195] gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678] Length = 342 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D I + TLKDV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIHEKIPRPETVKSEL 327 >gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis HAW-EB4] Length = 342 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVQ-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID I K TLK V+ K G VIP E Sbjct: 227 LDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIVEHKVTLKQVLEFKAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IL Y C++GR +N ++I ++I + Sbjct: 287 --YIILKVEDLPTYRCKMGRTKENLALKICEQIPRPETVKTEL 327 >gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223] gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223] Length = 342 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D I + TLKDV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIHEKIPRPETVKSEL 327 >gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175] gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155] gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185] gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183] gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175] Length = 342 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D I + TLKDV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDANIVEHELTLKDVMNFKAGDIIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 287 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 327 >gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB 400] Length = 342 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FEYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TL+DV+ K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDVNVVEHEVTLRDVMGFKAGDIIPIDLPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ G Y C++G+ N ++I+++I + Sbjct: 287 H--IMMRIEGLPTYRCKMGKSRDNLALKISEKIPRPETVKTEM 327 >gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4] Length = 341 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 55 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 114 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 115 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 173 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 225 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V +D I K+ +LKDV+ K G +IP E Sbjct: 226 LDAGVQSDTQDTDMRWSQALKDEIMDVEVGLDATIVEKEISLKDVMGFKAGDIIPVEMPE 285 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +L Y C+LGR +N + I ++I + Sbjct: 286 --YIVLRVEDLPTYRCKLGRSRENLALNIREKIPRPETVKTEL 326 >gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1] gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32] gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200] Length = 343 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDACVVEHELTLKDVMNFKAGDIIPVELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKTEL 328 >gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1] gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1] Length = 343 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMRIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328 >gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4] gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7] Length = 343 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVVEHELTLKDVMNFKAGDIIPIELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328 >gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799] Length = 357 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 100/283 (35%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M + ++S Q KF +H+ + I Sbjct: 56 ERFARHLRISLFNMMRRNAEVSINGVQMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + + + + + Sbjct: 116 EARLVFILVDNFFGGDGRFQAKIEGREFTPTERRIIQLLLKTVFEDYKESWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDGGGGDFHITLPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V++ T + ++ TL+D++ +K G +IP E Sbjct: 227 LDAGVQSDKQDTDMRWAKALQDEIMDVPVDLSTMLLEQELTLRDIMEMKAGDIIPVEMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ + +LGR G N +RI +RI + Sbjct: 287 H--LLVRIEDLPTFRGKLGRKGDNVAVRIEERIPRPKSYKNEL 327 >gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3] Length = 341 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 55 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 114 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 115 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 173 ------FDYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 225 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + ++V ID I + TLKDV+ K G VI E Sbjct: 226 LDAGVQSDTQDTDMRWSQALKDEIMDVDVGIDATIVEHQVTLKDVMEFKQGDVITVELPE 285 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C+LG N +RI + I + + Sbjct: 286 H--IVMRVEDLPTYRCKLGTARDNLALRICETIPRPETAKNEL 326 >gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3] Length = 343 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 94/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 57 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 117 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 175 ------FDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V D + + TLKDV+ K G +IP E Sbjct: 228 LDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDASVVEHELTLKDVMNFKAGDIIPIELPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++GR N ++I ++I + Sbjct: 288 --YIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRPETVKSEL 328 >gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99] gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99] Length = 348 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 97/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 62 ERFARHLRISMFNMMRRAAEVSINGVQMIKFGEYVHTLFVPTSLNMVKFSPLKGTGLITM 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 122 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE-- 179 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +++ Sbjct: 180 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDGGGGDFHITMPYS-MIEPIREL 232 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V ID I ++ LKDV+ + G +IP E Sbjct: 233 LDAGVQSDTQDTDKRWSMALKDEIMDIKVGIDATIVDQEIALKDVMKFRAGDIIPVDLPE 292 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 +L Y C+LG+ N +RI ++I + Sbjct: 293 H--IVLRVEDLPTYRCKLGKSRDNLALRIIEKIPRPKTVKTEL 333 >gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella silvestris BL2] Length = 314 Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 112/311 (36%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++L R+ I + S +L L S + + Sbjct: 28 DRMPMLHVILDRM---------IAQCSENLRQLSAP------------PAFFSVDTVAAR 66 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + ++ +++ +W S IG ++ + TL E L G P R LS Sbjct: 67 RVGDVLDAYENKVAIGVYHALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLS 126 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 ++E +LA + + L ST +++ LE L N F T + + Sbjct: 127 SLELRLAHKALDLFGRALQSAFSTVSDTAFKLERVET--RLDFAVIAPRNAFGVTAKIKL 184 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++IPQ L + L + D + + + + I Sbjct: 185 RILGRHGEMFILIPQAA-LNSVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVI 243 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + L D+ LK+G ++ T L N + ++ C LG+ YT+RI + ++ Sbjct: 244 EERHFLLGDIADLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSR 303 Query: 307 DQKSLKNFLHK 317 +Q+ + L + Sbjct: 304 EQEFVDEMLSR 314 >gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56] Length = 209 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 113/209 (54%) Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 +E+LLGA+ +TI + +R LS +E LA +I+ VL ++ P+L + D Sbjct: 1 MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + +EF INM++T+ + S F LI+PQ LLKT + + ++ S + Sbjct: 61 TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + +V ++ RI L+ TL+ + L +G VIPF + +SAN KE+Y C Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180 Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316 E GR G+NY +R+ D +N D + +++ ++ Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLMN 209 >gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278] Length = 400 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E L KR I + A Q Sbjct: 174 STLIYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLADAEQAFRPLSPVRFT 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + FA + + V +D + LK ++ LK+G +P R + Sbjct: 292 EKFG-RDPVWEGHFATEITRAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 351 RCGNTMLTEGRMGRVGDRVAIRVTKNLRKPHTTLAMF 387 >gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2] Length = 364 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 60 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 178 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + TR+ K +L+ ++ L+ G VIP E Sbjct: 231 LDAGVQSDTEDTDLRWSKALRDEIMDVEVGLSTRMLEVKLSLEQIMNLQAGDVIPVEMPE 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++GR N ++I+++I S+K+ +H Sbjct: 291 H--ITVFIEDLPTFRAKMGRSRDNVALQISEKI-KRPDSVKSEMH 332 >gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B] Length = 342 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFQPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE-- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 DYL N E V + ++ ++ F + +P +++ Sbjct: 174 ------FDYLDSEVNPAMANIVSPTEVVVVNSFHIEVDGGGGDFHITMPYS-MIEPIREL 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ Q D + + V + + + +L+DV+ ++ G VIP E Sbjct: 227 LDAGVQSDKQDTDMRWSQALKDEIMDVEVGFEATVVEHQISLRDVMEMQAGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C+LG+ + ++I ++I + Sbjct: 287 --YVLMKIEELPTYRCKLGKSREQLALKICEKIPRPETVKTEL 327 >gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1] Length = 400 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E L KR I + + Q Sbjct: 174 STLIYSIIDVLLGGRRGNTQLRVEGRPYTTIETNLVKRLIEVVLSDAEQAFRPLSPVRFT 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVKLRIDMEDRGGNIELLLPYATIEPIRPVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + FA + Q V +D + LK ++ LK+G +P R + Sbjct: 292 EKFG-RDPVWEGHFATEIAQAEVAVDAVLYEADVPLKQLMRLKVGDTLPLDIRPDALVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + +L F Sbjct: 351 RCGSTMLTEGRMGRVGDRVAIRVTKNLRKPNTTLAMF 387 >gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA 110] gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 108/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V++S S +F ++S V S W + Sbjct: 114 RLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWDNFGMATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG + ++ R +T+E +L KR + + A Q + Sbjct: 174 SNLIYSMIDVLLGGRRGTSQLRIEGRPYTTIETELVKRLVEVVLADAEQAFRPLSPVTFT 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLRIDMEDRGGNIELLLPYATIEPIRGVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + FA + Q +++D + LK ++ LK+G +P R + Sbjct: 292 EKFG-RDPVWEGHFATEIGQAEISVDAVLYEADIPLKQLMRLKVGDTLPLDMRADANVTV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 I +GRVG IR+T + +L F Sbjct: 351 RCGDVTITEGRMGRVGDRVAIRVTKPLRKPSTTLAMF 387 >gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 311 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 108/315 (34%), Gaps = 10/315 (3%) Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63 ++ + P+ +++ RL G GD + + + + + L IF+ K + + Sbjct: 2 KAPKSDPIPMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIA 61 Query: 64 SCQSGKFSHI---IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + SF V + + L+ LLG + P Sbjct: 62 GVEVVRLAELKPEPDSFDALVVIPATDSRDALTMRL---DAQALSLLVSILLGGDPDIPP 118 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 +R S +E +A+ + LN S + + + Sbjct: 119 SPLDRPPSRIELDVARLVFGAFAQALNGTGSRSLGLRLPAPQPLAGPG-DFKRFLVRDGP 177 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240 I ++ V+ +P +LK + + + Q F + + V Sbjct: 178 GIRIAFSLGAGPVSGILTAWLPHRIILKARAPAAEDDSPAHTQ---WKQRFGEEVRRSTV 234 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + I L K L + LK GQV+ LS + ++ CE GR+G+NYT+RI Sbjct: 235 QVTATIPLTKLPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRI 294 Query: 301 TDRINFDQKSLKNFL 315 + Q L L Sbjct: 295 RQPFDDRQAVLDGLL 309 >gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisA53] Length = 403 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 109/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +FS ++S V S W + Sbjct: 117 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMNSIPLPAVLSVFKAEEWENFGLATVD 176 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + Sbjct: 177 SSLIYSMIDVLLGGRRGQTSMRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFK 236 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 237 IDRLET-NPRFAAITRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMG 294 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q +++D + + LK +++LK+G +P R + Sbjct: 295 EKFG-RDPIWEGHLATEITQAQISVDAVLYEAELPLKQLMSLKVGDTLPLEMRPDALVSV 353 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRV IR+T ++ + F Sbjct: 354 RCGSVILTEGRMGRVADRVAIRVTKQLRKPNTTYAMF 390 >gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis ANT/505] Length = 363 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 96/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V++ T++ TLK ++ LK G +IP E Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQLLEVDLTLKQIMELKAGDIIPVEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+++I Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDNVALQISEKIKRPDSVKSEL 330 >gi|315127312|ref|YP_004069315.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] gi|315015826|gb|ADT69164.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913] Length = 363 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 96/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V++ T++ +LK ++ LK G +IP E Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVDLSTQLLEVDLSLKQIMELKAGDIIPVEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+++I Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDNVALQISEKIKRPDSVKSEL 330 >gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2] Length = 399 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 108/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F+ ++S V + W + Sbjct: 113 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVD 172 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + Sbjct: 173 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFT 232 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 233 IDRLET-NPRFAAISRPAN-AAILVRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMG 290 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + +D + LK +++LK+G +P R + Sbjct: 291 EKFG-RDPIWEGHLATEIAKAEMYVDAVLYEADMPLKQLMSLKVGDTLPLDIRPDAMVSV 349 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ ++ + F Sbjct: 350 RCGDVTLSEGRMGRVGDRVAIRVSKPLHKPHTTYAMF 386 >gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis TAC125] gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing [Pseudoalteromonas haloplanktis TAC125] Length = 363 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 119 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS-- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 177 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T++ TLK ++ LK G +IP E Sbjct: 230 LDAGVQSDTEDTDLRWSKALRDEIMDVEVELSTQLLEVDLTLKQIMELKAGDIIPVEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR + ++I+++I Sbjct: 290 H--ITVFVEELPTFRAKMGRSRDSVALQISEKIKRPDSVKSEL 330 >gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas palustris CGA009] gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q S + Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q ++++D + + L+ ++ L++G +P R + Sbjct: 292 EKFG-RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 351 RCGSVVLTEGRMGRVGDRVAIRVTKPLRKPLTTYAMF 387 >gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi Nb-255] Length = 401 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVD 174 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG ++ ++ R +T+E L KR + + A Q S + Sbjct: 175 SSLIYSMIDVLLGGRRGQSSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVSFS 234 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 235 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 292 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + L+ ++TLK+G +P R + Sbjct: 293 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLRQLMTLKVGDTLPLEMRPDASVAV 351 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ + + F Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVSRHLRKPSTTFAMF 388 >gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans OM5] Length = 398 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 111/277 (40%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F+ ++S V + W + Sbjct: 112 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVD 171 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + Sbjct: 172 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFT 231 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 232 IDRLET-NPRFAAISRPAN-AAILVRLRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMG 289 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + LK +++L++G +P R + Sbjct: 290 EKFG-RDPIWEGHLATEIAQAELYVDAVLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSV 348 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ +GRVG IR++ ++ + + F Sbjct: 349 RCGDVKLSEGRMGRVGDRVAIRVSKPLHKPRTTYAMF 385 >gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris HaA2] Length = 401 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 110/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +FS ++S V W + Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMNSIPLPAVLCVFKAEEWQNFGLATVD 174 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q + + Sbjct: 175 SSLIYSMIDVLLGGRRGQAAIRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVAFS 234 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 235 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 292 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q ++++D + + L+ ++ L++G +P R + Sbjct: 293 EKFG-RDQVWEGHLATEIGQADISVDAVLYEAEVPLRQLMALQVGDTLPLDLRADALVAV 351 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVTKPLRKPVTTYAMF 388 >gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14] Length = 401 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 106/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 115 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLSVFKAEEWENFGLAMVD 174 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q + + Sbjct: 175 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFS 234 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 235 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 292 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + LK ++ LK+G +P R + Sbjct: 293 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMALKVGDTLPLDMRPDASVAV 351 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ + + F Sbjct: 352 RCGSVTLTEGRMGRVGDRVAIRVSRHLRKPNTTFAMF 388 >gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris DX-1] Length = 400 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 109/277 (39%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q S + Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLEVVLADAEQAFRPLSPVSFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q ++++D + + L+ ++ L++G +P R + Sbjct: 292 EKFG-RDQVWEGHLATEIVQADISVDAVLYEAELPLRQLMALQVGDTLPLELRADATVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 351 RCGSVVLTEGRMGRVGDRVAIRVTKPLRRPLTTYAMF 387 >gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB5] Length = 400 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 108/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYMNSIPLPAVLCVFKAEEWQNFGLATVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L KR + + A Q + + Sbjct: 174 SSLIYSMIDVLLGGRRGQAALRIEGRPYTTIETNLVKRLLQVVLADAEQAFRPLSPVAFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + +R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAISRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRGVLMQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Q +++D + + LK ++ L++G +P R + Sbjct: 292 EKFG-RDQVWEGHLATEVVQAEISVDAVLYEAEVPLKQLMALQVGDTLPLDLRADALVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR+T + + F Sbjct: 351 RCGSVTLTEGRMGRVGDRVAIRVTKPLRRPVTTYAMF 387 >gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris BisB18] Length = 404 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 105/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +FS + S V S W + Sbjct: 118 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDYMSSIPLPAVLSVFKAEEWENFGLATVD 177 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG + ++ R +T+E L KR + + A Q + Sbjct: 178 SALIYSMIDVLLGGRRGQASMRVEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFK 237 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + +++ +E+ + L++P T+ ++ L+ + Sbjct: 238 IDRLET-NPRFAAITRPAN-AAILVRLHIDMEDRGGNIELLLPYATIEPIRAVLMQMFMG 295 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + + Q +++D + + LK ++ LK+G +P R + Sbjct: 296 EKFG-RDPIWEGHLSTEIAQAEISVDAVLYEAEIPLKQLMRLKVGDTLPLELRADALVAV 354 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRV IR+T ++ + F Sbjct: 355 RCGNVTLTEGRMGRVADRVAIRVTKQLRKPNTTYAMF 391 >gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3] gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3] Length = 352 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF +H+ + + Sbjct: 63 ERFARHLRISLFNMLRHTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTM 122 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + I + + Sbjct: 123 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKDAWAPVMTA--- 179 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N E + + ++ ++ F + +P +L+ Sbjct: 180 -----DFEYLDSEVNPAMANIVSPTEVIVVNSFHIELDGGGGDFHIAMPYS-MLEPIREL 233 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + ++V + ++ K+ L+D++ +G +IP E Sbjct: 234 LDAGVQSDKEDTDQRWSQALEDEIMDVDVYLTAKLLEKQLPLRDMINWSVGDIIPVELPE 293 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + G + +LG+ N ++I DRI + Sbjct: 294 ELLVCV--EGLPSFHAKLGKSNDNLALKIIDRIKRPE 328 >gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp. salmonicida A449] gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 356 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ TL++++ LK G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETDLTLRELMELKPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++GR N ++ITD++ + +K +H Sbjct: 288 NLLVYV--EDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 400 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 106/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S V S W + Sbjct: 114 RLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDYLNSIPLPAVLSVFKAEEWENFGLAMVD 173 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG +T ++ R +T+E L KR + + A Q S + Sbjct: 174 SSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIETNLVKRLVEVVLADAEQAFRPLSPVSFS 233 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + R +N + + + +E+ + L++P T+ ++ L+ + Sbjct: 234 IDRLET-NPRFAAITRPAN-AAILVRLRIDMEDRGGTIELLLPYATIEPIRNVLLQMFMG 291 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + Q + +D + + LK ++TLK+G + R + Sbjct: 292 EKFG-RDPIWESHLATEIAQAQIAVDAVLYEAEIPLKQLMTLKVGDTLALEMRPDASVAV 350 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GRVG IR++ + + F Sbjct: 351 RCGSVTLTEGRMGRVGDRVAIRVSRNLRKPNTTFAMF 387 >gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145] gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145] Length = 354 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 98/283 (34%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 58 ERFARHMRVSLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDV--- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 175 -----GFEYLDSEVNPAMANIVSPTEVIVISSFHIELDGGGGDFHIALPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D+ A + ++V ++ L TL++V+ + G +IP + Sbjct: 229 LDAGVQSDKEDTDMRWSKALRDEIMDVPVEMVAKLADVDVTLREVMDFEEGDIIPLEVPD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+D+I + + Sbjct: 289 N--LTVFIEDLPTFHAKMGRSRDNIALKISDKIRRPETVKSDI 329 >gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila] Length = 356 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ + TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + ++GR N ++ITD++ + +K +H Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 356 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ + TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELQPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + ++GR N ++ITD++ + +K +H Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565] gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565] Length = 356 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 99/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ + TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETELTLRELMELRPGDIIPVDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++ + ++GR N ++ITD++ + +K +H Sbjct: 288 N--LLVFVEDLPTFHAKMGRTKDNVALKITDKL-KRPEGVKTEMH 329 >gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026] Length = 348 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 52 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 108 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 109 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 168 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 169 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 226 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 227 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 286 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 287 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 346 Query: 316 H 316 Sbjct: 347 A 347 >gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36] gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36] Length = 350 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 103/289 (35%), Gaps = 22/289 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + + Sbjct: 58 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + ++ + ++ Sbjct: 118 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKIVFEDYHEAWAPVMDAE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDGGGGDFHITMPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T++ + T+ ++ L++G +IP E Sbjct: 229 LDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETELTIGQIMELRVGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQKSLKNFLHK 317 + + Y +LGR N ++I+ ++ N + + + + + Sbjct: 289 E--LTVFIEDLPSYKAKLGRNKDNVAVKISRKLKVSNLTKSDIDHVVLR 335 >gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp. damselae CIP 102761] Length = 347 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + + Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L+ L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLIFILVENFFGGDGRFHAKIEGREFTPTERRIIQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VNI ++ TL+D++ L++G +IP Sbjct: 228 LDAGVQSDKMDTDVRWSRALREEIMDIPVNIRAKLLDVDLTLRDLMELQVGDIIPVDMP- 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 287 -DTATVFVEDLPTYRAKMGRSGDNVALKISEKLKRPD 322 >gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14] gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14] Length = 349 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN+ ++ +L+D++ L++G VIP E Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 288 --QATIFVEDLPTYHAKMGRSGDNVALKISEKLQRPD 322 >gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR] gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR] Length = 356 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 100/283 (35%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 60 ERFARHMRVSLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + + + + + Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWAPVMDV--- 176 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 177 -----GFEYLDSEVNPAMANIVSPTEVIVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR--INLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D+ A + ++V ++ + + +L++V+ L+ G VIP + Sbjct: 231 LDAGVQSDKEDTDMRWSKALRDEIMDVPVEMIAKLAQTEMSLREVMDLREGDVIPLELPD 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + ++GR N ++I+++I + + Sbjct: 291 D--LTVLIEDLPTFHAKMGRSRDNVALKISEKIKRPETVKSDI 331 >gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34] gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34] Length = 349 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN+ ++ +L+D++ L++G VIP E Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 288 --QATIFVEDLPTYHAKMGRSGDNVALKISEKLQRPD 322 >gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila] Length = 356 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 98/285 (34%), Gaps = 20/285 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 57 ERFARHMRISLFNMMRRTAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + + Sbjct: 117 EARLVFILVENFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--- 173 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F + +P +L+ Sbjct: 174 -----GFEYLDSEVNPAMANIVSPTEVIVVSSFHIELDGGGGDFHVAMPYS-MLEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V + ++ TL++++ L+ G +IP E Sbjct: 228 LDAGVQSDKGDTDVRWSKALRDEIMDVKVELRAKLLETDLTLRELMELRPGDIIPVEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++GR +N ++ITD++ + +K +H Sbjct: 288 NLLVYV--EDLPTFHAKMGRTKENVALKITDKL-KRPEGVKTEMH 329 >gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica 4H-3-7+YE-5] Length = 352 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + +L+ ++ +K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++ITD+I Sbjct: 289 H--ITVMIEELPTFRAKLGRSRDNLALKITDKIPRP 322 >gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica T6c] Length = 352 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 94/276 (34%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + +L+ ++ +K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLTLSLQKIMDMKAGDIIPIDMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++ITD+I Sbjct: 289 H--ITVMIEELPTFRAKLGRSRDNLALKITDKIPRP 322 >gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 349 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN+ ++ +L+D++ L++G VIP E Sbjct: 228 LDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRAKLLDVDLSLRDLMELQVGDVIPIDMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G N ++I++++ Sbjct: 288 --QATIFIEDLPTYHAKMGRSGDNVALKISEKLKRPD 322 >gi|239997091|ref|ZP_04717615.1| flagellar motor switch protein FliM [Alteromonas macleodii ATCC 27126] Length = 352 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + L+DV+ K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVPLRDVMEFKPGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++I ++I Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322 >gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330] gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445] gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686] gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94] gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1] gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1] gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis M292/94/1] gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330] gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis ATCC 23365] gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915] gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40] gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 316 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|332140589|ref|YP_004426327.1| flagellar motor switch protein FliM [Alteromonas macleodii str. 'Deep ecotype'] gi|327550611|gb|AEA97329.1| flagellar motor switch protein FliM [Alteromonas macleodii str. 'Deep ecotype'] Length = 352 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 92/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + L+DV+ K G +IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVPLRDVMEFKPGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++I ++I Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322 >gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1] gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94] gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 316 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis M163/99/10] gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] Length = 316 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 115/301 (38%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDTSSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1] gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1] Length = 316 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 113/292 (38%), Gaps = 6/292 (2%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 GD K++ + + L K+ D S +S + F + + + Sbjct: 29 GDLKSLAHVFKDASSHFCARL----KQGSAAAFDAETGSVESTDKTAFNDIFDKAAIITP 84 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 W + ++ LV +++E + GA P +R VE+K+A ++ Sbjct: 85 LKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANLLAGHLADA 144 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L++ +T S P ID + + L + T + +T L++P+ T Sbjct: 145 LDRVFNT-GSSQPLFAPGDCIDTADFDRDNLELSRLFTCRIAVTAAGKTGQMHLLLPRST 203 Query: 206 LLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +Q++ ++ + + ++ + +L + L+IGQV Sbjct: 204 HKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDALSRLEIGQV 263 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 264 LKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELVA 315 >gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513] gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 316 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMLLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9] gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium profundum SS9] Length = 348 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIELDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +D + + VN+ ++ +L+D++ L+ G +IP E Sbjct: 228 LDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIPIDVPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 Y ++G+ G N ++IT ++ Sbjct: 288 SATV--FVEDLPTYRAKMGKSGDNIALKITQKLKRPD 322 >gi|71278806|ref|YP_268251.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H] gi|71144546|gb|AAZ25019.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H] Length = 354 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 60 ERFARHMRISLFNMMRRTAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTALITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + + + S + S Sbjct: 120 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKLVFEDYKEAWSPVMDVS-- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 178 ------FEYLDSEVNPSMANIVSPTEVVVISSFHIELDGGGGDFHIALPYS-MLEPIREL 230 Query: 214 LSSQNKSENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D+ + + V I+T+ +L V+ L+ G +IP + Sbjct: 231 LDAGVQSDKEDTDMRWSKALRDEIMDVPVTINTKFIEVDISLSQVMELQAGDIIPIEMPD 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + +LGR N ++I +I + + Sbjct: 291 NITVL--IEDLPTFRAKLGRSRDNIALKIESKIRRPESAKSEL 331 >gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33] gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 316 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ + + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQGVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK] gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK] Length = 348 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 57 ERFARHMRISLFNMLRKTAEVSINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 117 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 175 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +D + + VN+ ++ +L+D++ L+ G +IP E Sbjct: 228 LDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAKLLDVDLSLRDLMELQAGDIIPIDVPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 Y ++G+ G N ++IT ++ Sbjct: 288 SATV--FVEDLPTYRAKMGKSGDNIALKITQKLKRPD 322 >gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida LFI1238] gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein FliM) [Aliivibrio salmonicida LFI1238] Length = 343 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 97/277 (35%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S KF ++ + + Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVSMVKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKVVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F ++ P +++ Sbjct: 176 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVFPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ ++N + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESEISLRDLMDLQAGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++G+ G ++IT++I Sbjct: 289 --AATVFVEDLPTYRGKVGKSGDKLAVQITEKIKRPD 323 >gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] Length = 353 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 102/304 (33%), Gaps = 25/304 (8%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R+ G T+E I+ + L + ++ ++S Q KF ++ Sbjct: 44 DRIVR--GRMPTLELINERFARHMRISLFNMIRK----TAEVSINGVQMVKFGEYQNTLF 97 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + I LV L+EN G ++ R + E+++ + Sbjct: 98 VPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGREFTPTERRVIQML 157 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIEN 192 + I + +YL N E + + ++ ++ Sbjct: 158 LKLIFEDYKDAWAPVMRVE--------FEYLDSEVNPAMANIVSPTEVIVVSSFHIELDG 209 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKK 250 F +++P +++ L + +S+ D + + V++ ++ Sbjct: 210 GGGDFHVVMPYS-MVEPIRELLDAGIQSDKMDTDKRWSKALQDEVMDVEVSLTAKLLETT 268 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +L+D++ ++ G VIP + + +LG+ N I+ITD++ + Sbjct: 269 LSLRDLMEMEAGDVIPVKMP--DACTVYIEDLPTFRGKLGQSNDNLAIKITDKLKRPEVM 326 Query: 311 LKNF 314 + Sbjct: 327 KSDV 330 >gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum anthropi ATCC 49188] Length = 317 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 109/300 (36%), Gaps = 6/300 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F K D+ +S + Sbjct: 22 LLRAAGLSGDD--LKSLAHVFKDASTHFC-DRLKHGCAAAFDVEAGQVESTDDAAFADIL 78 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W S ++ LV +++E + GA +R +E+K++ Sbjct: 79 DKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGMLEQKISAL 138 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 +++ L+Q + ++ + D + S F I+ +T Sbjct: 139 LAGHLASSLDQVFAANGQALFTAGECTDTAEFDRENFERSRLFACRID--VTAAGKTGQV 196 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 L++P+ T + + NQ ++ + + ++ I TL + Sbjct: 197 HLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIELEAFIQQGSMTLDAL 256 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 257 SMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELVA 316 >gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF 2653] Length = 348 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D +S + F Sbjct: 52 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPVESTDKTAFNDIF 108 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 109 DKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQKIANL 168 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T D D + LS F T + +T Sbjct: 169 LAGHLADALDRVFNTGSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 226 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 227 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 286 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 287 LSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELV 346 Query: 316 H 316 Sbjct: 347 A 347 >gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. 16M] gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str. Rev.1] gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str. Ether] gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str. 16M] gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str. 16M] gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 316 Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 114/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P + VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114] gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11] Length = 344 Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S KF ++ + + Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVSMVKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + I + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKVIFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F ++ P +++ Sbjct: 176 ------FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDGGGGDFHVVFPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ ++N + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESQISLRDLMELEAGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++G+ I+IT++I Sbjct: 289 --AATVFVEDLPTYRGKVGQSNDKLAIQITEKIKRPD 323 >gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum SV96] Length = 331 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 96/271 (35%), Gaps = 16/271 (5%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F+ + +I + Q KFS I + + I Sbjct: 69 ERFARFIRISLFNFLRRSAEIFISGIQVQKFSEYIQGLLVPTNLTIVRFNPLRGKALIVI 128 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G + + Q R + E ++ + I I L + E Sbjct: 129 DPRLVFTVVDNFFGGAGQFYNQTEGREFTPTEMRVVRIIIDMIFKDLKEAWKPVMEL--- 185 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E + +++ +E + +P L + Sbjct: 186 -----DFEYVGAEINPRFANIIGPGEIIVISTIHVELEGGGGDVNIAMPYAMLEPIRELL 240 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + S + + V+I++ + K T++DV+ LK G VIP Sbjct: 241 DAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEKNMTIRDVMRLKKGDVIPIDMP--D 298 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 IL A G ++ ++G NY I+I D++ Sbjct: 299 TVILKAEGIPVFEGKVGISDGNYAIQIIDKV 329 >gi|332994114|gb|AEF04169.1| flagellar motor switch protein FliM [Alteromonas sp. SN2] Length = 352 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 93/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF IH+ + I Sbjct: 58 ERFARHMRVSLFNMMRRSAEVSINGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E+++ + + I + + + S Sbjct: 118 EARLVFILVDNFFGGDGRYHAKIEGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDVS-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E V + ++ ++ F + +P +L+ Sbjct: 176 ------FEYLDSEVNPAMANIVSPTEVVVISSFHIELDGGGGDFHVSLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ + D + + V + T + +L+ V+ K G++IP E Sbjct: 229 LDAGVQSDKEDTDLRWSKALRDEIMDVKVALTTHMLDVDVSLRQVMEFKPGEIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +LGR N ++I ++I Sbjct: 289 TITVL--IEDLPTFRAKLGRSRDNLALKIVEKIARP 322 >gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4] gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4] Length = 348 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 103/309 (33%), Gaps = 25/309 (8%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 +NT+ R+ G T+E I+ + L + ++ ++S Q Sbjct: 32 ENTTNFDFSSQDRIVR--GRMPTLELINERFARHMRISLFNMLRK----TAEVSINGVQM 85 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KF ++ + I LV L+EN G ++ R Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREF 145 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFV 181 + E+++ + + + + S +YL N E + Sbjct: 146 TPTERRIIQLLLKIVFEDYKEAWSPVMGVE--------FEYLDSEVNPSMANIVSPTEVI 197 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLN 239 + ++ ++ F +++P +++ L + +S+ D + Sbjct: 198 VVSSFHIEVDGGGGDFHVVMPYS-MVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCP 256 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 VN + K +L+D++ L+ G VIP E A + Y ++GR ++ Sbjct: 257 VNFRVNLLEKDISLRDLMELQPGDVIPIDMPEN--ATMFIEDLPTYRVKMGRSEDKLAVQ 314 Query: 300 ITDRINFDQ 308 +++ I Sbjct: 315 VSEEIERPH 323 >gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC 23457] gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str. 63/9] gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28] gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90] Length = 316 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 113/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKMAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P + VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13] gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13] gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13] Length = 316 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 112/301 (37%), Gaps = 7/301 (2%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P +R VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDRPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T D D + LS F T + +T Sbjct: 137 LAGHLADALDRVFNTGSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 L++P+ T + + +Q++ ++ + + ++ + +L Sbjct: 195 MHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMSLDA 254 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + L+IGQV+ A ++++ C LG+ G ++T+++ D +N ++ + + Sbjct: 255 LSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDELV 314 Query: 316 H 316 Sbjct: 315 A 315 >gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546] Length = 349 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVDLLEQDISLRDLMELQPGDIIPVTMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ + ++GR G+N ++++++I Sbjct: 289 H--AVMFVEELPTFRVKMGRSGENLAVQVSEKIKRPD 323 >gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326] Length = 349 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIPITMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+N ++++++I Sbjct: 289 H--ATMFVEELPTFRVKMGRSGENLAVQVSEKIKRPD 323 >gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231] Length = 336 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 9/272 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + KFS +H+ + + Sbjct: 60 ERFARLLRTGLFNMLRKTAEVSVVGVELLKFSEYVHTLYLPTSLNLVKVPPLRGTGLCVL 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ ++ + Q A L + + Sbjct: 120 DPKLVFILVDNFFGGDGRYFSKIEGREFTPTETRVIRKVLEQGFADLREAWNPVLPVDF- 178 Query: 160 LEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 +F +++ + N +E V ++ + + +P T+++ LS+ Sbjct: 179 --EFLNMEVNPQFANIVSPSEAVVVSRFHVELNGGGGDLHITLPY-TMIEPVRDVLSAGV 235 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ D + + V + R+ + +L +++ L+ G +IP E + Sbjct: 236 QSDRNDVDQRWVRSLREEMKSAPVRLSCRLTEARVSLHELMRLQPGDIIPIEMPE--TVV 293 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L A + LG G N ++IT+ I Q Sbjct: 294 LRAAEVPVLRGRLGCSGGNVAVKITEPIRAPQ 325 >gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80] Length = 349 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEDLPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3] Length = 347 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFSRHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++I+++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIQRPH 323 >gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01] gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 348 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFVEDLPTYRVKMGRSEDKLAVQISEEIERPH 323 >gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25] Length = 348 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFVEDLPTYRVKMGRSEDKLAVQISEEIERPH 323 >gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901] Length = 332 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 104/277 (37%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + I Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L++ + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFVDLHEAWKAVK----- 170 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 171 ---LIDFEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYS-MVEPIREI 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V+++ + + TL+++V LK+G +IP E Sbjct: 227 LDAGLQSDTDERDDRWVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I +ANG ++ ++G+ N +RI D ++ + Sbjct: 287 --VHIATANGVPMFQAKIGQCNNNLALRILDYVDRTR 321 >gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5] Length = 188 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 97/187 (51%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +E LA +I+ VL ++ P+L + D + +EF INM++T Sbjct: 2 IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+ Sbjct: 62 LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181 Query: 310 SLKNFLH 316 +++ ++ Sbjct: 182 LIRHLMN 188 >gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32] gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222] gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32] Length = 347 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSSALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++I+++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIERPH 323 >gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01] gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01] Length = 347 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDISLRDLMELRPGDVIPMNMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++I+++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQISEKIQRPH 323 >gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP 69.14] Length = 281 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 99/269 (36%), Gaps = 19/269 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + ++S Q KF ++ + + LV L+EN G Sbjct: 2 LRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFG 61 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ + + + A + S +YL Sbjct: 62 GDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE--------FEYLDSEV 113 Query: 174 NR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 N E + + ++ ++ F +++P +++ L + +S+ D+ Sbjct: 114 NPSMANIVSPTEVIVVCSFHIEVDGGGGDFHMVMPYS-MVEPIRELLDAGVQSDKMETDV 172 Query: 228 IDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 A + ++V I+ R+N + L+D++ L++G +IP E AI+ Y Sbjct: 173 RWSSALRDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMPEH--AIMFVEELPTY 230 Query: 286 SCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++GR G ++I+ +I + + Sbjct: 231 RVKMGRSGDKLAVQISQKIKRPEAMKTDL 259 >gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1] gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1] Length = 349 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLMKTVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEKDVSLRDLMELQAGDIIPIDMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+ ++I+++I Sbjct: 289 N--ATMFVEELPTFRVKMGRTGEKVAVQISEKIRRPD 323 >gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 348 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKMAVQISEEIERPH 323 >gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 107/302 (35%), Gaps = 10/302 (3%) Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 R G GD ++ ++ F K DI +S + + Sbjct: 24 RAAGLSGDD--LKSLAHVFKDASTHFC-DRLKHGCAAAFDIDAGQVESTDEAAFADILDK 80 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE----TIPQLYNRSLSTVEKKLA 135 + + W ++ LV +++E + GA +R +E+K++ Sbjct: 81 AAIIAPLKAERWGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKIS 140 Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195 ++ L+Q + ++ + D + S F I+ +T Sbjct: 141 ALLAGHLAKSLDQVFAGNGQTLFAAGECIDTAEFDRENFERSRLFACRID--VTAAGKTG 198 Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLK 254 L++P+ T + + NQ++ + + + ++ I TL Sbjct: 199 RVHLLLPRSTHKPMQDAVAAFLRRPMNQADPSWAKKMRHEVSRARIELEAFIQQGSMTLD 258 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + Sbjct: 259 ALSMLEIGQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDEL 318 Query: 315 LH 316 + Sbjct: 319 VA 320 >gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116] gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01] gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116] Length = 348 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDVIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++I++ I Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKMAVQISEEIERPH 323 >gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586] gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586] Length = 349 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P + + Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16] Length = 349 Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELRPGDIIPISMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G ++++++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGDKLAVQVSEKIKRPD 323 >gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223] Length = 300 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 9 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 69 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 126 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 127 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 179 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 180 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 239 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 240 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 274 >gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972] gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218] Length = 352 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 93/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + + Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFGDYKDAWAPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHIVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + L+D++ L++G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDLALRDLMELQVGDIIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR G+ ++++++I Sbjct: 289 H--ATMFVEELPTYRVKMGRSGEKLAVQVSEKIRRPD 323 >gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80] gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52] gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587] gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3] gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51] gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457] gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39] gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2] gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226] gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2] gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395] gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)] gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9] gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21] gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33] gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286] gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236] gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10] gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101] gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27] gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1] gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93] gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757] gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4] Length = 349 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis VL426] gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385] Length = 349 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFIEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573] gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451] Length = 349 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P + + Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603] gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603] Length = 349 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 102/277 (36%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P + + Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMM-EPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6] gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016] gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O] Length = 347 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 92/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G VIP + Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELRPGDVIPIEMPK 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++G+ + ++I++ I Sbjct: 289 H--AVMFVEELPTYRVKMGQSNEKLAVQISEEIERPH 323 >gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus] gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD 2210633] gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus Peru-466] gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AN-5034] gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ4037] gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030] gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329] Length = 348 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 89/277 (32%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHAKIEGREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + VN + K +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDISLRDLMELQPGDIIPIEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + Y ++GR ++++ I Sbjct: 289 H--ATMFIEDLPTYRVKMGRSEDKLAVQVSQEIERPH 323 >gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC BAA-450] Length = 351 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 60 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 120 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 178 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 230 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN + + +L+D++ L+ G +IP E Sbjct: 231 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEQDISLRDLMELQPGDIIPITMPE 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+ ++++++I Sbjct: 291 N--ATMFVEELPTFRVKMGRSGEQLAVQVSEKIKRPD 325 >gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341] gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341] Length = 349 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 103/277 (37%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 58 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + A + S Sbjct: 118 EARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A + ++V ++ R+NL + L+D++ L++G VIP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A++ Y ++GR G+ ++++++I Sbjct: 289 H--AVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323 >gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891] Length = 349 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + + + S Sbjct: 118 EARLVFILVENFFGGDGRFHARIEGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F +++P +++ Sbjct: 176 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDGGGGDFHVVMPYS-MVEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + VN ++ + +L+D++ L+ G +IP E Sbjct: 229 LDAGVQSDKMETDVRWSTALREEIMDVPVNFRVQLLEQDISLRDLMELQPGDIIPINMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 A + + ++GR G+ ++++++I Sbjct: 289 H--ATMFVEELPTFRTKMGRSGELLAVQVSEKIKRPD 323 >gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7] Length = 326 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 95/277 (34%), Gaps = 19/277 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + +IS + KFS +H+ + + Sbjct: 61 ERFARQMRISLFNLLRRSAEISVGGIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVV 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + T+ Q L + + + Sbjct: 121 DPKLVFILVDNFFGGDGRYHAKIEGREFTPTELRVIRMTLDQAFTDLKKAWAPVMDL--- 177 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E V + ++ ++ + +P +++ Sbjct: 178 -----DFEYINSEVNPQFANIVSPTEVVCVSSFHIELDGGGGDLHVTMPYS-MIEPMREL 231 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D I + V + + + +L+DV+ LK G +IP E Sbjct: 232 LDAGIQSDRSDVDERWIRALRDEVKAAEVELSSMLTETTLSLEDVMRLKPGDIIPIDLPE 291 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +L A G + + G I++T+RI Sbjct: 292 --QVLLRAEGIPVLRGKFGVSDGYNAIKVTERIRRAD 326 >gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1] gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1] Length = 322 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ + ++V I + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 I+ ANG + ++G N +++ + I Sbjct: 289 D--MIMRANGVPAFKVKMGSHKGNLALQVIEPIERR 322 >gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619] gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619] Length = 322 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 92/270 (34%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFIDLKEAWQAIMPVNFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + ++V + + ++ L+DV+ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPSFKARLGSHKGNLALQIIDPIERR 322 >gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107] Length = 339 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + I Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGVQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + S Sbjct: 117 DARLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLNQAFVDLGEAWKAVFPVSF- 174 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E + +E V ++ ++ + +P +++ L + + Sbjct: 175 -EYVHSEVNPSLANIVSPSEVVVVSTFHIELDGGGGEMHITVPYS-MIEPIREVLDAGLQ 232 Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S++ Q E + V+++ + + TL+D+V LK G +IP ++ Sbjct: 233 SDSEEQDERWVRALREDVLAAKVDLECDVVRRDITLRDIVDLKEGDIIPVEFP--DYHVV 290 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +ANG ++ +LG+ N ++I + I+ Sbjct: 291 TANGVPMFRTQLGQHNDNLALKILEFIDRS 320 >gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14] Length = 334 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 23/289 (7%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + L++ L + + ++S + KF+ +HS + Sbjct: 47 GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV +++N G ++ R + E ++ + Q A Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V +++ ++ + Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +L+ L + +S+ D + V + + + K+ TL+D+ Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLT 273 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK+G V+P L +++ E G ++IT Sbjct: 274 RLKVGDVLPIELNP--QVPLCVENIPVFTGEFGIANGMNAVKITATHPP 320 >gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2] gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2] Length = 253 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 98/244 (40%), Gaps = 4/244 (1%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 F + + + W + ++ LV +++E + GA P +R VE+K+ Sbjct: 11 DIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADRPFGMVEQKI 70 Query: 135 AKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 A ++ L++ +T D D ++ LS F T ++ +T Sbjct: 71 ANLLAGHLAGALDRVFNTGSSQPLFAPGDCIDTADFDRDNFELSRLF--TCHIAVTAAGK 128 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTT 252 L++P+ T + + +Q++ ++ + + ++ + + Sbjct: 129 TGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEAFMQQGSMS 188 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ + Sbjct: 189 LDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPVNQEEDLID 248 Query: 313 NFLH 316 + Sbjct: 249 ELVA 252 >gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396] Length = 340 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + + D++ Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLLRRNADVASGGVQILKFGEYIHTLYVPTSLNLVKIRPLRGTGLFIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQMVLEQVFHDMKEAWNAVMKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 173 -----DFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDMHVAMPYS-MIEPIREV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E I + + V ++ + +K +L+ + LK G VIP E Sbjct: 227 LDAGVQSDVDDVDERWISALQQDILEARVPLNAAVVRQKISLRSLSRLKPGDVIPVELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 ++ANG I+ ++G+ N ++I D+I Sbjct: 287 --TITVTANGVPIFIAKVGQCNGNLALKIVDKI 317 >gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440] gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida] gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1] gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1] Length = 322 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + S Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + + V + + ++ L+D++ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322 >gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51] Length = 322 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + S Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVSFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + + V + + ++ L+D++ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322 >gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1] Length = 322 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVTFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + +E V ++ ++ + +P +++ L + + Sbjct: 178 YMNSEVNPAMANIVG--PSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREMLDAGFQ 234 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++Q E + + V + + ++ L+D++ ++ G VIP E +L Sbjct: 235 SDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVELPEH--LVL 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 ANG + LG N ++I D I Sbjct: 293 RANGVPAFKARLGSHKGNLALQIIDPIERR 322 >gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 337 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ TL+ + LK+G V+P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMTLRQLTGLKVGDVLPIELPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGISNGNNAVKIT 317 >gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC 11170] Length = 384 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 109/269 (40%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + QS +F ++S + S W + + Sbjct: 116 RLVRMMSTSLRNFTSDNVEVSLDNIQSYRFGDYLNSIPLPAMLSVFKAEEWDNYGLLTID 175 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++++ ++++ LLG T ++ R +T+E+ L +R + + A L+ + Sbjct: 176 SSMIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERLVHVVLADLSAAFDPLSPVTFR 235 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ ++IP TL ++ L+ + Sbjct: 236 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLDMLIPYATLEPVRELLLQMFMG 293 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V +D ++ L ++++++G I F + L Sbjct: 294 EKFG-RDSIWETHLAEEMWSTEVQMDAILDEVYMPLNKILSMEVGSQILFNATPDSTVQL 352 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ ++GR G+N IR+ + N Sbjct: 353 RCGDVPMFDGKMGRKGQNIAIRVDSKHNR 381 >gi|312884904|ref|ZP_07744594.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC BAA-2122] gi|309367381|gb|EFP94943.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC BAA-2122] Length = 348 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 19/283 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S Q KF ++ + + Sbjct: 57 ERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTGLVTM 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L+EN G ++ R + E+++ + + I + S Sbjct: 117 EARLVFILVENFFGGEGRYHSRIEGREFTPTERRIVQLLLKIIFEDYKEAWSPVMGVE-- 174 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E + + ++ ++ F ++ P +++ Sbjct: 175 ------FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHVVFPYS-MVEPIREL 227 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D+ A K ++V I+ R+N L+D++ L+ G +IP Sbjct: 228 LDAGVQSDKMEADVRWSSALKEEIMDVPINFRVNLLEHDIALRDLMELQPGDIIPVEMPP 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 A++ Y ++GR I+I++ I + Sbjct: 288 H--AVMFVEELPTYRVKMGRSSDKLAIQISEEIKRPDAVKTDI 328 >gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 337 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ TL+ + LK+G V+P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMTLRQLTGLKVGDVLPIELPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia R551-3] Length = 334 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 23/289 (7%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + L++ L + + ++S + KF+ +HS + Sbjct: 47 GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV +++N G ++ R + E ++ + Q A Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V +++ ++ + Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +L+ L + +S+ D + V + + + K+ TL+D+ Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLASKRMTLRDLT 273 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK+G ++P L +++ E G ++IT Sbjct: 274 QLKVGDILPIELSP--QVPLCVENIPVFTGEFGIANGMNAVKITATHPP 320 >gi|330808225|ref|YP_004352687.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376333|gb|AEA67683.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 322 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I+ + ++V I + ++ L+D++ ++ G +IP E Sbjct: 229 LDAGFQSDLDDQDERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + ++G N +++ + I Sbjct: 289 D--MVMRANGVPAFKVKMGSHKGNLALQVIEPIERR 322 >gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5] Length = 322 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 93/276 (33%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAIM----- 172 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 173 ---PVNFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWSKALREDVLDVAVPLSATVARRQLRLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 I+ ANG + +LG N +++ + I Sbjct: 289 D--MIMRANGVPSFKVKLGSHKGNLALQVIEPIERR 322 >gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 108/267 (40%), Gaps = 6/267 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + + Sbjct: 117 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNYGLLTVD 176 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 177 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 236 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ L++P TL ++ L+ + Sbjct: 237 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 294 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ + L+DV+ K+G I + + L Sbjct: 295 EKFG-RDSIWETHLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKILLNAQPNSPIDL 353 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 ++ +GR G + IR+ D+I Sbjct: 354 RCGDVSMFRGRMGRKGPHIAIRVDDKI 380 >gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas maltophilia K279a] Length = 334 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 99/289 (34%), Gaps = 23/289 (7%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + L++ L + + ++S + KF+ +HS + Sbjct: 47 GRMPTLEMVHERFARLWRIGLFNLIR----RSAELSVRGIELIKFNDYMHSLYVPTNLNL 102 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 I LV +++N G ++ R + E ++ + Q A Sbjct: 103 IRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFTATEMRVIHLLLKQTFAD 162 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVL 199 L + + + D +Y+ N E+V +++ ++ + Sbjct: 163 LREAWAPVMDV--------DFEYINSEINPHFANIVTPREYVVVCRLHVELDGGGGDIHV 214 Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +L+ L + +S+ D + V + + + K+ TL+D+ Sbjct: 215 TLPYS-MLEPIRELLDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLASKRMTLRDLT 273 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK+G ++P + + +++ E G ++IT Sbjct: 274 QLKVGDILPIELSPQVPVCV--ENIPVFTGEFGIANGMNAVKITATHPP 320 >gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48] Length = 322 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 92/276 (33%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIM----- 172 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 173 ---PVNFEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWVKALREDVLDVAVPMSATVARRQLKLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + LG ++I D I Sbjct: 289 H--LVLRANGVPAFKARLGSHKGTLALQIIDPIERR 322 >gi|254491591|ref|ZP_05104770.1| flagellar motor switch protein FliM [Methylophaga thiooxidans DMS010] gi|224463069|gb|EEF79339.1| flagellar motor switch protein FliM [Methylophaga thiooxydans DMS010] Length = 340 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 11/286 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E I+ G + L + + +IS + Q KFS +H+ + Sbjct: 51 GRMPTLEMINERFGRYLRISLFDMLR----RSAEISVSGIQVMKFSEYMHTLFVPTSLNL 106 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L I LV T+L+N G ++ R + E ++ + + Sbjct: 107 IHLHPLRGTGLIVLEPKLVFTILDNYFGGEGRFQARIEGREFTATELRVIRMVLNLCFTD 166 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + S E + +E V ++ ++ L P Sbjct: 167 LTEAWSPVMEVDFEFVSHEV--NPQFANIVSPSEVVVISTFHVELDGGGGDIHLTFPYS- 223 Query: 206 LLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +L+ L + +S+ ++D + +V I ++ TL + LK G Sbjct: 224 MLEPIRELLDTGLQSDRTADDGRWSKAMREELMVADVEIWAKLAETSLTLAQIHKLKTGD 283 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +IP + + ++ G + ++I + I + Sbjct: 284 IIPIQMPKN--VVAMVEDVPMFRASYGEHNEKAALKIAEVIEHPKD 327 >gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65] Length = 331 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 94/273 (34%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF IH+ + + Sbjct: 57 ERFARYTRISMFNFLRRSADVASGGIQIMKFGEYIHTLYVPTSLNMVKVRPLRGTALFIF 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + ++Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLSQVFTDMKEAWHAVLDL--- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y N +E V + ++ ++ + +P +++ Sbjct: 173 -----DFEYYGSEVNPAMANIVSPSEVVVISSFHIELDGGGGDLHVALPYS-MIEPIREF 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + V + + ++ +L++V + G VIP E Sbjct: 227 LDAGVQSDVDEVDDRWVQSLQEDIQSAKVPVHGTVVDREISLREVAAFQPGDVIPVDMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 IL ANG I+ +LG N ++I + I Sbjct: 287 D--FILQANGTPIFRGQLGVRDDNLAVKIKEPI 317 >gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92] gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92] Length = 325 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 102/271 (37%), Gaps = 8/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q K+ IH+ + ++ Sbjct: 61 ERFARYTRISLFNLLRRAADVTVGGVQVMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIM 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E +L + + Q L + + +E S + Sbjct: 121 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTETRLIHKALEQFFLDLEEAWNPVKELSFD 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++++ N E V + +E + F + +P +L+ L S + Sbjct: 180 -HLGHEMNPAMANV-INPTEVVVVSTFQVDLEGGSGEFHVAMPYS-MLEPIRDLLVSGFQ 236 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + E R + ++ + ++ TL+DVV L+ G +IP E L Sbjct: 237 SGEDEKDERWQVALQRDILMAGLPLEMTLAQQEMTLRDVVDLQAGDIIPIELPE--TFEL 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 AN +Y+C +G N +++ ++I + Sbjct: 295 KANKVPVYNCTMGVSRGNLAVKVVNQIERPK 325 >gi|307945662|ref|ZP_07660998.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4] gi|307771535|gb|EFO30760.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4] Length = 410 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 98/271 (36%), Gaps = 6/271 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + W I Sbjct: 125 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGMITVE 184 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E L ++ ++ I Q + Sbjct: 185 SSLIYSIIDVLLGGGRGATAVRVEGRPYTTIETNLVQQMVSLILQDAEQAFAPLSPVHFT 244 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 +E + +R +N + + + +E+ + +++P TL ++ L+ + Sbjct: 245 MERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMG 302 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V +D + L V+ L +GQ + F L Sbjct: 303 EKFG-RDPIWEGHLATEVHAAEVEVDAVLYETHLPLGRVMNLDVGQTLVFDIEPTDPVTL 361 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + +G+ I++T + + Sbjct: 362 KCGNVPLTEGTMGKAEDAIAIQVTKNLRKPK 392 >gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6] Length = 322 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQGMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + ++V + + ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDVIPVELPQ 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + I+ ANG + +LG N +++ + IN Sbjct: 289 E--MIMRANGVPSFKVKLGSHKGNLALQVIEPINRR 322 >gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40] Length = 333 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + I Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRPLRGTALIIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFIDLKEAWKAVK----- 170 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 171 ---AIDFEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYS-MVEPIREV 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + + V+++ + ++ TL+D+V L+ G +IP E Sbjct: 227 LDAGLQSDTDERDDRWVRALQEDVMEARVDLEADLVRREVTLRDIVDLREGDIIPITMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 IL+ANG ++ +LG++ N +RI ++ Sbjct: 287 YN--ILTANGVPMFKTQLGQLNDNLAMRILGFVDRSN 321 >gi|288958672|ref|YP_003449013.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288910980|dbj|BAI72469.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 357 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 101/271 (37%), Gaps = 6/271 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S + S W + + Sbjct: 86 RLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVD 145 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 146 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 205 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + R +N + + + +E+ L+IP TL ++ L+ + Sbjct: 206 FDRLET-NPRFATIARPAN-AAVLVKLRIDMEDRGGRLELMIPYATLEPVRELLLQMFMG 263 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + +V++ ++ TL DV+ ++G I L Sbjct: 264 EKFG-RDSIWETHLASELMVTDVDLSAVLDEVTMTLHDVLNWRVGTRILLNATPDGAIEL 322 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ +GR G + +R+ + + Sbjct: 323 RCGDVSMFQGRMGRKGGHIAVRLEKELPKQE 353 >gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum SL003B-26A1] gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum SL003B-26A1] Length = 411 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 105/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + W + Sbjct: 127 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVE 186 Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LL G T ++ R +T+E L +R + I A Q + N Sbjct: 187 SSLIYSIIDVLLGGGRGTTAVRVEGRPYTTIETNLVRRMVEIILADAEQAFAPLSPVHFN 246 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + +E+ + +++P TL ++ L+ + Sbjct: 247 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMG 304 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + +D + L V++L +GQ + F + Sbjct: 305 EKFG-RDPIWEGHLASEIHAAEIEVDAVLYETHLPLGRVLSLDVGQTLIFDVDPHDPITI 363 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+V + IR+T + + +L F Sbjct: 364 KCGNVPLTEGTLGKVEDSIAIRVTRGLRRPKMTLAAF 400 >gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae 642] Length = 322 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + +LG +++ + I Sbjct: 289 S--LVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv. citri str. 306] gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 337 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea MMB-1] Length = 329 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 104/283 (36%), Gaps = 21/283 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + S Sbjct: 57 ERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAWAPVLKLE-- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 ++Y+ N ++N E V ++ ++ + +P +++ Sbjct: 174 ------LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + + ++VN+ I KK TL DV+ K G VIP E Sbjct: 227 LDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEMPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKN 313 + AN + +LG Y++++ + I ++SLKN Sbjct: 287 --YVTVRANNVPTFRGKLGSSNGKYSVQMKESIKAQMKESLKN 327 >gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118] Length = 337 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. maculicola str. ES4326] Length = 252 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 20/262 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + D++ Q KF +HS + A + LV L++N G Sbjct: 3 LRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFG 62 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + + Q L + E + +Y+ Sbjct: 63 GDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--------NFEYINSEV 113 Query: 174 NRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSE 225 N +E V ++ ++ + +P +++ L + +S ++Q E Sbjct: 114 NPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDE 172 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 ++ +NV + T I ++ L+D++ ++ G VIP + ++ ANG + Sbjct: 173 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSDS--LVMRANGVPSF 230 Query: 286 SCELGRVGKNYTIRITDRINFD 307 +LG +++ + I Sbjct: 231 KVKLGSHKGKMALQVIEPIARR 252 >gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 337 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEDIPLFTGEFGVSNGNNAVKIT 317 >gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7] Length = 322 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 95/262 (36%), Gaps = 20/262 (7%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + D++ Q KF +HS + A + LV L++N G Sbjct: 73 LRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E ++ + + Q L + E + +Y+ Sbjct: 133 GDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--------NFEYINSEV 183 Query: 174 NRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSE 225 N +E V ++ ++ + +P +++ L + +S ++Q E Sbjct: 184 NPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDE 242 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 ++ +NV + T I ++ L+D++ ++ G VIP + +L ANG + Sbjct: 243 RWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELGDS--LVLRANGVPSF 300 Query: 286 SCELGRVGKNYTIRITDRINFD 307 +LG +++ + I Sbjct: 301 KVKLGSHKGKMALQVIEPIARR 322 >gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC 19865] Length = 337 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + E Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1] gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1] Length = 354 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HVKIEGREFTPTENRVVQLVLKQAFKDMEEAWKAVL----- 172 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N +E V ++ ++ L +P +++ Sbjct: 173 ---PVKFEYLSSEVNPALANIVSPSEVVVVNTFHIELDGGGGDLQLTVPYS-MIEPLREV 228 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S +S+ NQ E + + NV++ ++ +K L ++ LK G V+ E Sbjct: 229 LDSGVQSDVGNQDERWMSSLREEIMGANVHLRCKLLDRKIKLSELAALKTGDVLQVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ AN Y +LG + Y ++I +++ + Sbjct: 289 H--VMIYANEVPTYRGKLGTSREKYAVKIAEKVQRPE 323 >gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato Max13] gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato K40] gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato str. DC3000] gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tomato T1] gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 97/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + +LG +++ + I Sbjct: 288 -DTLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N + +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPVMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L ANG + +LG +++ + I Sbjct: 288 -DTLVLRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae FF5] gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv. syringae B728a] gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aceris str. M302273PT] Length = 322 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + +LG +++ + I Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + E Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMEV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLNTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPMFTGEFGVSNGNNAVKIT 317 >gi|296531938|ref|ZP_06894735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] gi|296267736|gb|EFH13564.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] Length = 355 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 102/276 (36%), Gaps = 6/276 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F +++ + W + + Sbjct: 67 RLVRIMSTSLRNFTSDNVEVSIEGITSLRFGDYLNTIPLPAMLVVFKAEEWDNYGLVVVD 126 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + L+ E Sbjct: 127 SALIYSVVDVLLGGRRGTTAMRIEGRPYTTIERGLIERLTEVVLKDLSDAFGPLAEVEFR 186 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E +++ +R SN V + + +E+ L++P T L+ L Q Sbjct: 187 FERL-EVNPRFAAISRPSNAAVLA-RLRVDMESRGGQLQLLLPYAT-LEPVRELLLQQFM 243 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E D A + Q V +D ++ + L DVV L++G +I L Sbjct: 244 GEKFGRDSIWETHLAEELRQTEVALDVVLDEQTMRLSDVVRLQVGDLITLGVGPGAPVRL 303 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++ ++G +RI + + L++ Sbjct: 304 RCGDTSLFEGQVGGRKGRLAVRIDRAMPRQAEGLRD 339 >gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062] Length = 409 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 107/277 (38%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S + +F ++S + W + Sbjct: 125 RLVRLTTTSLRNFTSDNVEVSLDSMTNVRFGDYLNSIPLPAILGVFKAKEWDGFGLVTVE 184 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG + ++ R +T+E L +R I I Q S Sbjct: 185 SSLIYSIIDVLLGGGRGSSPTRVEGRPYTTIESNLVRRMIEIILLDAEQAFGPLSPVSFP 244 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + + +E+ +++P TL ++ L+ + Sbjct: 245 LERLET-NPRFAAISRPANAAIM-VELRIDMEDRGGKVEIVLPYATLEPIRDLLLQMFMG 302 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + + A + Y V +D + L+ V+ L++GQ + F + + Sbjct: 303 EKFG-RDPIWEEHLATEVYSSEVQVDAVLYENTIPLQRVLNLEVGQTLLFDTGPRDPVQV 361 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 G ++ +G V +I I+ ++ + +L F Sbjct: 362 KCGGVQLTEGLMGHVDDRISIEISKKLKQPKMTLAAF 398 >gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum centenum] gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 352 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 104/311 (33%), Gaps = 26/311 (8%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL L F+ V+++ S Sbjct: 66 DRLPMLDVVFDRLVR---------------------LLNTSFRNLTSGTVEVTVQQIASV 104 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + + + W ++ + + L+ ++++ LLG + R + Sbjct: 105 RFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRSDPAPIDGRPYT 164 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E+ LA+R I + L S E SN + + Sbjct: 165 VIERALAERLIRTVLKDLGTAFSPLSAVGFACERVETTPQFA--VITRSNNACISARFQV 222 Query: 189 TIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 ++ L+IP TL ++ L+ + K + + + +V++ + Sbjct: 223 ALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFG-RDSMWETHLKNELRRTSVDLSAVL 281 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +L D++ K G + R A+L+ ++ E+G+ N IRI + Sbjct: 282 GQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRNGNVAIRIDADLGA 341 Query: 307 DQKSLKNFLHK 317 + + L + Sbjct: 342 QDEVIHGLLQR 352 >gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 2250] gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. B076] gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori str. 301020] gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 322 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I+ +NV + T I ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDLDDQDERWINALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + +LG +++ + I Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|254504876|ref|ZP_05117027.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11] gi|222440947|gb|EEE47626.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11] Length = 412 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + + W I Sbjct: 128 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKVEEWDGFGLITVE 187 Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LL G T ++ R +T+E L ++ + I Q + N Sbjct: 188 SSLIYSIIDVLLGGGRGTTAARVEGRPYTTIETNLVQQMVQLILQDAEQAFAPLSPVHFN 247 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + +E+ + +++P TL ++ L+ + Sbjct: 248 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMG 305 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + +D + L V++L +GQ + F ++ Sbjct: 306 EKFG-RDPIWEGHLATEIHAAEIEVDAVLYETYLPLGRVLSLDVGQTLVFDVAPTDPVLV 364 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+ + IR+ + + +L F Sbjct: 365 KCGNIPLTEGTLGKTEDSIAIRVAKNLRKPKMTLAAF 401 >gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25] gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25] Length = 322 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 97/273 (35%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E + ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYS-MIEPVREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E + ++V + + ++ L+D++ ++ G +IP E Sbjct: 229 LDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + I+ ANG + +LG N +++ + I Sbjct: 289 E--MIMRANGVPSFKVKLGSHKGNLALQVVESI 319 >gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. oryzae str. 1_6] Length = 322 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 175 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 229 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ ANG + +LG +++ + I Sbjct: 289 S--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 322 >gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzicola BLS256] Length = 337 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D++Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans DS-1] Length = 374 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 102/267 (38%), Gaps = 6/267 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + Sbjct: 76 RLVRLMTVSLRNFTSDNVEVSLDNVSSIRFGDYLNSIPLPAILAVFRAKQWDNYGMFTVD 135 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E L +R I + + + Sbjct: 136 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIELNLVQRMIEVVLQDVQSAFEPLSPVTLE 195 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + +E+ L++P TL ++ L+ + Sbjct: 196 LDRMETNPRFAAIARPA--NAAILVKLRVDMEDRGGRIELLLPYATLEPIRELLLQMFMG 253 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ ++ +L++V+ ++GQ + + L Sbjct: 254 EKFG-RDTIWESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTLMLNSGPEGAIDL 312 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 G + ++GRVG + +R+ I Sbjct: 313 RCGGVRLGKGKMGRVGNHVAVRVEQAI 339 >gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium HTCC2143] Length = 320 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 97/270 (35%), Gaps = 8/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +H+ + L I Sbjct: 57 ERFSRYTRISLFNLLRRSADVAVGGIQVQKFGEYVHTLFVPTSLNMIKLRPLRGTGLIVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + + A L + Sbjct: 117 DAKLVFKLVDNYFGGDGR-HAKIEGREFTPTELRVVEMVLQEAFADLKEAWRAVLPVEFE 175 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + +E V ++ ++ + +P +++ +L S + Sbjct: 176 FVNAEV--NPSMANIVSPSEVVVVSTFHIELDGGGGDMHITLPYA-MIEPIRETLDSGLQ 232 Query: 220 S--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++ + I VN+ ++ K+ L+D++ LK G VIP ++ Sbjct: 233 TDVDDIDDRWIKSLREDILNATVNMGCKVAEKEVPLRDIIDLKEGDVIPMEMPGD--LVI 290 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 SANG + +LG+ N +++ ++IN + Sbjct: 291 SANGIPMMLAKLGQSKGNLALQVVEKINNE 320 >gi|285018173|ref|YP_003375884.1| flagellar motor switch protein [Xanthomonas albilineans GPE PC73] gi|283473391|emb|CBA15896.1| probable flagellar motor switch protein [Xanthomonas albilineans] Length = 335 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 90/275 (32%), Gaps = 19/275 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 58 ERFARLCRIGLFNLIRRSADLSVRGIDLVKFNDYMHSLYVPSNLNLIKFKPLRGTGLIVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L++ + Sbjct: 118 EPTLVFTVVDNFFGGDGRYPTRIEGREFTPTEMRVIQLMLKQTFADLHEAWAPVMNVE-- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N E+V ++ +E + +P +L+ Sbjct: 176 ------FEYLNSEVNPHFANIVTPREYVVVSRFHVELEGGGGEIHVTLPYS-MLEPIREL 228 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + Y V I + + K+ +L+++ L+IG ++P Sbjct: 229 LDAGIQSDRVDRDESWNIMLREQLYGSEVTISSVLAQKEMSLRELTRLRIGDILPIDLP- 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L +++ E G ++IT Sbjct: 288 -KQVPLCVENIPVFTGEFGVSQGQNAVKITATHPP 321 >gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae PXO99A] Length = 337 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRYHTRIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D++Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DLEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LK+G ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKVGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. B100] gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris] Length = 337 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 19/270 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N E+V ++ +E + +P +L+ Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGGEIHITLPYS-MLEPIREL 229 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + V + + + K+ +L+ + LKIG ++P Sbjct: 230 LDAGIQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPIDLPA 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 290 --QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|23015785|ref|ZP_00055552.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 395 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 104/265 (39%), Gaps = 6/265 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + + Sbjct: 128 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNFGLLTVD 187 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 188 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 247 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ L++P TL ++ L+ + Sbjct: 248 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 305 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ + L++V+ K G + + Sbjct: 306 EKFG-RDSIWETHLAEELWLTEVELEAVLDEQVMNLREVLNWKPGSKFMLNATADSQIDM 364 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 ++ +GR G++ I++ + Sbjct: 365 RCGEVAMFRGRMGRKGQHIAIQVDE 389 >gi|83312597|ref|YP_422861.1| flagellar motor switch protein FliM [Magnetospirillum magneticum AMB-1] gi|82947438|dbj|BAE52302.1| Flagellar motor switch protein fliM [Magnetospirillum magneticum AMB-1] Length = 393 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 104/265 (39%), Gaps = 6/265 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + W + + Sbjct: 126 RLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFKAEEWDNFGLLTVD 185 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 186 SSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 245 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + +R SN + + + +E+ L++P TL ++ L+ + Sbjct: 246 FDRLET-NPRFATISRPSNAAIVA-KLRIDMEDRGGRLELLLPYATLEPVRELLLQMFMG 303 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V ++ ++ + L++V+ K G + + Sbjct: 304 EKFG-RDSIWETHLAEELWLTEVELEAVLDEQVMNLREVLNWKPGSKFMLNATADSQIDM 362 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 ++ +GR G++ I++ + Sbjct: 363 RCGEVAMFRGRMGRKGQHIAIQVDE 387 >gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus trichosporium OB3b] Length = 339 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 104/258 (40%), Gaps = 5/258 (1%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ S + + + ++ + + + + +G V ++E L GA Sbjct: 83 VAVESVAATRAAEAQNALDALAITATYGGAEPDARVTLGAERKFVFAMVEGLFGADGSEP 142 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 R+L++VE +LA+ + +++ L ++T ++ L+ R + Sbjct: 143 FYEEERALTSVEIRLARLVLDRLAKALQISFASTAGAALALDPVEPKPEPAGAARRSGSA 202 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQ 237 + +T S ++ PQ +L +L++ + QS D + Sbjct: 203 LIC--RFRLTAFGAESEALVTFPQG-VLDPLREALAADPATTIQSADPLWAQRMKDRITA 259 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + + TL DV ++GQ++ L G+ ++ CE+G+ YT Sbjct: 260 TEVSLTAVMERRDLTLGDVARFEVGQIVELPVSPTGLIALECEGQTLFWCEIGQKDGAYT 319 Query: 298 IRITDRINFDQKSLKNFL 315 IRI D ++ +Q+ + + L Sbjct: 320 IRIADFVDKEQEFIDDML 337 >gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501] Length = 342 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +HS + + Sbjct: 78 ERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 137 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q A L + + Sbjct: 138 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDV--- 193 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ +++ + +P +++ Sbjct: 194 -----NFEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYS-MIEPIREM 247 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +Q E + +NV + + ++ L+D++ ++ G VIP E Sbjct: 248 LDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPE 307 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I+ ANG + +LG N +++ + + Sbjct: 308 D--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 338 >gi|319787093|ref|YP_004146568.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis 11-1] gi|317465605|gb|ADV27337.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis 11-1] Length = 339 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 25/309 (8%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ G T+E ++ L++ L + + DIS KF Sbjct: 38 PYDFASQDRIIR--GRMPTLEMVNERFARLWRIGLFNLIR----RSADISVRGIDMIKFG 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 +HS + + LV +++N G ++ R + E Sbjct: 92 EYMHSLYVPTNLNLVRFKPLRGMGLVVFEPKLVFAVVDNFFGGDGRYPTRIEGREFTVTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNEFVTTIN 185 ++ + + Q A L + + + +Y+ N E+V Sbjct: 152 MRVIQLMLRQTFADLVEAWAPVMDVE--------FEYINSEINPHFANIVTPREYVVVSR 203 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243 ++ ++ + +P +L+ L + +S+ D + V + Sbjct: 204 FHVELDGGGGEIHVTLPYS-MLEPIRELLDAGIQSDRIDRDESWNTTLREQLQLAEVTVS 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + K+ L+ + LK+G ++P T + +++ + G ++IT Sbjct: 263 SVLAQKRIDLRQLTRLKVGDILPIDLS--TTVPVCVENIPVFTGQFGVSNGCNAVKITRT 320 Query: 304 INFDQKSLK 312 ++ + Sbjct: 321 HPPGSETAR 329 >gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. glycinea str. race 4] Length = 242 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 90/253 (35%), Gaps = 20/253 (7%) Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122 Q KF +HS + A + LV L++N G ++ Sbjct: 2 GGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKI 60 Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------ 176 R + E ++ + + Q L + E + +Y+ N Sbjct: 61 EGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEV--------NFEYINSEVNPAMANIVG 112 Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARK 234 +E ++ ++ + +P +++ L + +S ++Q E I+ Sbjct: 113 PSEAGVISTFHIELDGGGGDLHVTMPYS-MIEPIREMLDAGFQSDLDDQDERWINALKED 171 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +NV + T I ++ L+D++ ++ G VIP E ++ ANG + +LG Sbjct: 172 VLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSES--LVMRANGVPSFKVKLGSHKG 229 Query: 295 NYTIRITDRINFD 307 +++ + I Sbjct: 230 KMALQVIEPIARR 242 >gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp] Length = 323 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 99/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTGLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAWHAVMD---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ ++ + +P +++ Sbjct: 174 ----INFEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I ++V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I+ ANG + +LG N +++ + I + Sbjct: 289 N--VIMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323 >gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii MLHE-1] Length = 395 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 91/272 (33%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + ++S + KF +H+ + + Sbjct: 58 ERFARLFRIGLFNMLRRTPEVSVVGVEMMKFGEYVHTLFVPTSLNLMRVHPLRGTGLFII 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++N G ++ R + E ++ + I Q L + + + Sbjct: 118 DPKLVFIVVDNFFGGDGRFFVKIEGREFTPTELRVIRMLIDQAFENLEEAWNPVMNAEF- 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E + + +E V ++ ++ + +P T+++ L + + Sbjct: 177 -EYMHSEVNPQFANIVSPSEVVVVSKFHVELDGGGGDIHVTLPY-TMIEPIRELLDAGVQ 234 Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ E + V + + + + +L+DV+ +K G +IP E + Sbjct: 235 SDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNMKPGDIIPVELPE--AVKV 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 A ++ G N I+IT+RI + Sbjct: 293 YAEDMPVFRGRYGVRHGNTAIKITERIQPRAE 324 >gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199] Length = 341 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 106/269 (39%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + S W + + Sbjct: 75 RLVRMMSTSLRNFTSDNVEVSLDNITSIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVD 134 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 135 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVTVVLSDLSAAFDPLSPVTFR 194 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + R +N V + + +E+ L++P TL ++ L+ + Sbjct: 195 FDRLET-NPRFATIARPANAAVLA-RLRIDMEDRGGRLELMLPYATLEPVRELLLQMFMG 252 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + +V +D ++ L DV+ LK G I + + Sbjct: 253 EKFG-RDSIWETHLANELWNTDVELDAVLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDM 311 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 ++S ++GR + +RI++R+ Sbjct: 312 RCGNVSLFSGKMGRKNGSIAVRISNRLRK 340 >gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTGLFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAWHAVMD---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ ++ + +P +++ Sbjct: 174 ----INFEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I ++V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVELPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ ANG + +LG N +++ + I + Sbjct: 289 N--VVMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323 >gi|288962686|ref|YP_003452980.1| flagellar motor switch protein [Azospirillum sp. B510] gi|288914952|dbj|BAI76436.1| flagellar motor switch protein [Azospirillum sp. B510] Length = 374 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 36/318 (11%), Positives = 114/318 (35%), Gaps = 26/318 (8%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + +++K+ P+ ++ R+ L ++ +V+ Sbjct: 80 VSSTTVNKDRLPMLDVVFDRMVR---------------------MLNTSLRQFASTNVEA 118 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + +++ + + + A W + + + L+ +++ LLG Sbjct: 119 SLSKIEWLRYTDFQDAIELPALIGVARAEPWDNQMLVTIDSALIYCMMDVLLGGRRSRPG 178 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R+ +++E+K+ +R + + L Q + + T + Sbjct: 179 RIDGRAYTSIERKMTERMMKVVLQDLGQSFDPLAQVDFVFDRLEVNPQFATITRATN--A 236 Query: 181 VTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + + + + +E ++IP TL ++ L+ + K + + + Sbjct: 237 IIRVRIAVEVERRTGHIDIVIPYATLEPIRGKLVQMFMGEKFGH-DTVWESHLKNELMRS 295 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + K L +V+ + GQ + + ++ + +++ +G+ N + Sbjct: 296 KLELVAVLAETKVPLGEVLAWQKGQSLKLRISPDSTVMVFSKTIPLFAGHMGQRNDNIAV 355 Query: 299 RITDRINFDQKSLKNFLH 316 +I ++ Q+ + L Sbjct: 356 KIDTDLDTKQELIDGLLS 373 >gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614] Length = 412 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 104/277 (37%), Gaps = 6/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + +V++S S S +F ++S + W I Sbjct: 128 RLVRLTTTSLRNFTSDNVEVSLDSISSVRFGDYLNSIPLPAILGVFKAEEWDGFGLITVE 187 Query: 101 NNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L+ ++++ LL G + ++ R +T+E L ++ +A I + N Sbjct: 188 SSLIYSIIDVLLGGGRGTSAVRVEGRPYTTIETGLVQQMVALILQDAEHAFAPLSPVHFN 247 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + +R +N + + + +E+ S +++P TL ++ L+ + Sbjct: 248 LERLET-NPRFAAISRPAN-AAILVELRIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMG 305 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + V +D + L V++L +GQ + F ++ Sbjct: 306 EKFG-RDPIWEGHLATEIHAAEVEVDAVLYETYLPLGRVLSLDVGQTLVFDKEPTDPVMI 364 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + LG+V + IR+ + + +L F Sbjct: 365 KCGNIPLTEGTLGKVDDSIAIRVAKNLRKPKMTLAAF 401 >gi|15596640|ref|NP_250134.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1] gi|107100877|ref|ZP_01364795.1| hypothetical protein PaerPA_01001907 [Pseudomonas aeruginosa PACS2] gi|116049388|ref|YP_791809.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa UCBPP-PA14] gi|218892684|ref|YP_002441553.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58] gi|254234542|ref|ZP_04927865.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719] gi|254239793|ref|ZP_04933115.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192] gi|296390190|ref|ZP_06879665.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAb1] gi|313106442|ref|ZP_07792673.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016] gi|12230925|sp|Q51465|FLIM_PSEAE RecName: Full=Flagellar motor switch protein FliM gi|9947394|gb|AAG04832.1|AE004574_3 flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1] gi|115584609|gb|ABJ10624.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa UCBPP-PA14] gi|126166473|gb|EAZ51984.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719] gi|126193171|gb|EAZ57234.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192] gi|218772912|emb|CAW28724.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58] gi|310879175|gb|EFQ37769.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLE---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 174 ----MNFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ ANG + +LG N ++I + + + Sbjct: 289 H--MVMRANGVPAFKVKLGAHKGNLALQILEAVERSR 323 >gi|152984239|ref|YP_001349238.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7] gi|150959397|gb|ABR81422.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7] Length = 323 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAWQAVLE---- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 174 ----MNFEYVNSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHITMPYS-MIEPIREM 228 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E I + V + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDHDDQDERWIKALREDVLDVQVPLGATVVRRQLKLRDILHMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ ANG + +LG N ++I + + + Sbjct: 289 H--MVMRANGVPAFKVKLGAHKGNLALQIVEAVERSR 323 >gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8] Length = 332 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 20/272 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + + D+S Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLLRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLNQVFHDMKEAWHAVLQVE-- 173 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +YL N ++N E V ++ ++ +P +++ Sbjct: 174 ------FEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E ++ ++NV I+T + ++ +L+D+ +K G VIP E Sbjct: 227 LDAGVQSDIDDVDERWVNALQEDIKEVNVPINTTVCRRRISLRDIARMKAGDVIPVEIPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ANG IY LG +RI DR Sbjct: 287 H--LTVTANGIPIYKATLGTRDGKLALRIHDR 316 >gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium HP15] Length = 332 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 103/277 (37%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ M + D+S Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLMRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMKEAWHAVLKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N ++N E V ++ ++ +P +++ Sbjct: 173 -----DFEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E ++ +++V I+T + ++ +L+D+ +K G +IP E Sbjct: 227 LDAGVQSDIDDVDERWVNALQEDIKEVSVPINTTVCRRRISLRDIAKMKAGDIIPVEIPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ANG IY LG +RI +R + + Sbjct: 287 H--LTVTANGIPIYKATLGTRDGKLALRIHERASVPK 321 >gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166] Length = 323 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 100/273 (36%), Gaps = 20/273 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +HS + + Sbjct: 59 ERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFIL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q A L + + Sbjct: 119 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAWHAVLDV--- 174 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N L+N E V ++ +++ + +P +++ Sbjct: 175 -----NFEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYS-MIEPIREM 228 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ +Q E + +NV + + ++ L+D++ ++ G VIP E Sbjct: 229 LDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEMPE 288 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I+ ANG + +LG N +++ + + Sbjct: 289 D--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 319 >gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans ATCC 25259] Length = 334 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 98/270 (36%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + V+IS + K+S I + + + Sbjct: 59 ERFARLLRIGLYNFLRRGVEISVGPVRVSKYSEFIRNLVVPTNLNLVQFKPLRGTALMIF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +LV +++NL G ++ R + E ++ +R + + + Sbjct: 119 NPDLVFLMVDNLFGGDGRFHTRVEGRDFTQTEHRIIQRILNIVFEAYGKSWEPVYPIEFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V + + + ++ +P +++ L+S + Sbjct: 179 FIR-SEMNTQFANI-ATPNEVVVAVTFAIELGQISGEMHFCMPYS-MIEPIKDLLTSSLQ 235 Query: 220 SEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +EN + I ++ V I + + +L+D+V LK+G VIP A + Sbjct: 236 AENLEVDKRWIRLMRQQIQLAEVEIVADLGTAEVSLRDIVNLKVGDVIPLDIPPTIEAKV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C G+ YT+R+ ++ Sbjct: 296 --DGVPVMECAYGKFNGQYTLRVEKLLSTS 323 >gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893] gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893] Length = 332 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 20/272 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + + D+S Q KF IH+ + + Sbjct: 57 ERFARYTRISLFNLLRRNADVSTGGVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGEGR-HAKIEGREFTPTETRIVQMVLDQVFHDMREAWHAVLKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N ++N E V ++ ++ + +P +++ Sbjct: 173 -----DFEYLSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHMALPYS-MIEPIRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++ E + +NV I+T + ++ +L+D+ LK G +IP E Sbjct: 227 LDAGVQSDIDDVDERWVSALQEDIKDVNVPINTTVCRRRISLRDIAKLKEGDIIPVEIPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L+ANG +Y +G +RI DR Sbjct: 287 --LLTLTANGIPVYKATMGTRDGKLALRIHDR 316 >gi|88800464|ref|ZP_01116028.1| flagellar motor switch protein FliM [Reinekea sp. MED297] gi|88776794|gb|EAR08005.1| flagellar motor switch protein FliM [Reinekea sp. MED297] Length = 360 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 102/286 (35%), Gaps = 20/286 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +H+ + + Sbjct: 57 ERFARYTRISMFNFLRRSADVATGGIQILKFGEYVHTLYVPTSLNLVKVRPLRGTALFIL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + ++Q+ + + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRVVQMILSQVFQDMKEAWGAVLDV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +Y+ N ++N E V ++ ++ + +P +++ Sbjct: 173 -----DFEYMSSEVNPAMANIVSPSEVVVVSTFHIELDGGGGDLHMTLPYS-MIEPVRDV 226 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + E ++ V + + ++ L+++V L+ G VIP E Sbjct: 227 LDAGVQSDVDEIDERWVESLRHDILGAKVPTNAVVAEREIKLRELVDLQAGDVIPIDLPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +ANG ++ +LG+ G N +R+ + + + + + Sbjct: 287 --TIKFTANGIPLFETKLGQCGDNLALRVERPVRKMSRDIGDMKTR 330 >gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum] gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW] Length = 362 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 102/272 (37%), Gaps = 6/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S S +F ++S + + W + + Sbjct: 92 RLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLAVFKAEEWDNYGLMVID 151 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ ++++ LLG T ++ R +T+E+ L +R + + + L+ + Sbjct: 152 SALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSAAFDPLSPVTFR 211 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + R +N + + + +E+ L+IP TL ++ L+ + Sbjct: 212 FDRLET-NPRFATIARQAN-AAVLVKLRIDMEDRGGRLELLIPYATLEPVRELLLQMFMG 269 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + +V++ ++ +L DV+ +IG + L Sbjct: 270 EKFG-RDSIWETHLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLLNVAPDDTIEL 328 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ++ +GR G N +RI ++ Sbjct: 329 RCGDVPMFLGRMGRKGGNIAVRIDREAPKPEQ 360 >gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17] gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17] Length = 331 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 20/272 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S + Q KF +H+ + + Sbjct: 57 ERFARYTRISLFNLLRRTADVSTSGVQIMKFGEYVHTLYVPTSLNLCKIRPLRGTSLFVL 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ + + T + Sbjct: 117 DAKLVFKLVDNFFGGQGR-HAKIEGREFTPTENRIVQMMLNQVFHDMQEAWQTVLKV--- 172 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +YL N ++N E V ++ ++ +P +++ Sbjct: 173 -----NFEYLSSEVNPSMANIVSPSEVVVVSTFHIELDGGGGELHFALPYS-MIEPIRDV 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ D + ++V +++ I + +L++V K G +IP E Sbjct: 227 LDAGVQSDIDDTDERWVSALQEDIKTVSVAVNSTICRRHISLREVAKFKAGDIIPIEMAE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ANG IY+ LG +RI R Sbjct: 287 H--LTVTANGIPIYTATLGTRDDKLALRIHGR 316 >gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1] Length = 324 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 98/271 (36%), Gaps = 20/271 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + S Sbjct: 58 ERFARYTRISLFNMLRRTADVSSGGLQVMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + + Sbjct: 118 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFKDLTEAWAPVLKLE-- 174 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 ++Y+ N ++N E V ++ ++ + +P +++ Sbjct: 175 ------LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 227 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + + ++V + + +K +L +V+ K G +IP E Sbjct: 228 LDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEMPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + ANG + +LG + Y++++ + Sbjct: 288 --FVTVRANGVPTFKGKLGVSNERYSVQMQE 316 >gi|254418956|ref|ZP_05032680.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3] gi|196185133|gb|EDX80109.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3] Length = 346 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 71 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 130 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + + + N Sbjct: 131 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDARLAFEPLTPVTFN 190 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + I + + +E+ L++P TL ++ L+ Sbjct: 191 LDRLETNPRFAAIARPANAA--ILIKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 248 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + ++ + L V+ LK+G + + + Sbjct: 249 EKFG-RDNIWEGHLATELWTTETEVRAVLDEQMMPLSTVLNLKVGDTMMLNATPDSEVSI 307 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A + + +GR G++ +RI +N + Sbjct: 308 RAGAIPLTTGRMGRKGQHIAVRIEGPVNPE 337 >gi|170747253|ref|YP_001753513.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] gi|170653775|gb|ACB22830.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans JCM 2831] Length = 404 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 98/274 (35%), Gaps = 6/274 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W ++ + Sbjct: 121 RMIRLLSTSLRNLFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFRAEQWENSGLVTVD 180 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL + LLG + +L R + +E L +R + + L S Sbjct: 181 SNLAYATFDLLLGGKRGGSSSRLDGRPFTAIEMTLVRRLVEIVLGDLEMSFQPLSPVSFG 240 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ T I++ + ++ ++ P T ++ L+ Sbjct: 241 IDRIETNPRFATIT--RPGNAAILISLRLDVDGRGGMLQILFPYAT-IEPIRELLTQSFM 297 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E D A + +Q +V +D ++ LK V++LK+G+ + F + + Sbjct: 298 GEKLGRDHVWEGHLATEIWQADVTMDAVLHEMMLPLKQVMSLKVGETLMFDAKPSDLITV 357 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GRV + +++T + + ++ Sbjct: 358 RCGDWALTQGRIGRVDGHIAVQVTRPLRRSRTTI 391 >gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM 3776] Length = 375 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 106/289 (36%), Gaps = 9/289 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + +L + + + V++ S +S + S + F+ Sbjct: 65 RAFQALHEGFSREFGAALSGMLRAIVEVKLISVDQLTYSEFVFSLENPTCFNLLESKGLE 124 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + S +++ +++ LLG E+IP + +R L+ +E +L R + L Sbjct: 125 GHLILDLSPSIIFPIVDRLLGGGKESIPSIPSRPLTEIELQLVSRITLLVINGLENAWHN 184 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + L + NE + ++ +T+ V L IP T ++ Sbjct: 185 VCSLGLKVTQIESNPQLVQIV--PPNEVIVLVSFEITMGEVRGIMNLCIPFNT-IEPLSG 241 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQ---LNVNIDTRINLKK--TTLKDVVTLKIGQVIPF 267 LSS S Q + L DP R + + +NL T +D+ L +G VI Sbjct: 242 KLSSDTWSAYQKKGL-DPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDVIMT 300 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 H ++ + G ++ + G V IR+T + + L+ L Sbjct: 301 EHPKEDGLEVVVEGCPMFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349 >gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB 48] gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB 48] Length = 387 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 101/272 (37%), Gaps = 6/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 110 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 169 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + I + N Sbjct: 170 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILHDAKMAFEPLTPVNFN 229 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 230 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRVELLLPYATLEPIRKMLLQQFMG 287 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ ++ L +V+ LK+G+ I + L Sbjct: 288 EKFG-RDNIWESHLATELWTTQMEVRAVLDEQQMPLSEVLNLKVGETIVLNATADSPIEL 346 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++GR G N +R+ + K Sbjct: 347 RCGTIPLTNGKMGRKGHNIAVRVDHPLAASTK 378 >gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC1989] Length = 340 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S KF +H+ + + Sbjct: 57 ERFARYTRISMFNLLRRTADVSVGGINIQKFGEYVHTLYVPTSLNMVKFRPLRGTALVVF 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q + + Sbjct: 117 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDMKEAWRAVL----- 170 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +++ N ++N E V + ++ ++ + IP +++ Sbjct: 171 ---PIDFEHVNSEVNPSMANIVSPSEVVVVSSFHVELDGGGGEMHITIPYS-MIEPIREM 226 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S++ D ++ Q NV +DT K LKD+V LK G VIP E Sbjct: 227 LDAGLQSDSDERDDRWVNSLREDIMQANVRLDTNFVQSKILLKDIVDLKEGDVIPIELPE 286 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + I +ANG ++ ++G+ N+ +++ + I + Sbjct: 287 E--YITNANGVPMFKVDIGQSNGNFALKVNEVIERTK 321 >gi|329888223|ref|ZP_08266821.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC 11568] gi|328846779|gb|EGF96341.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC 11568] Length = 352 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 100/270 (37%), Gaps = 6/270 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 76 RLVRLMTTSLRNFTSDNVEVSLDTISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 135 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + I Q N Sbjct: 136 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILNDARQAFEPLTPVHFN 195 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + +E+ L++P TL ++ L+ Sbjct: 196 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRVELLLPYSTLEPIRKMLLQQFMG 253 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + ++ ++ L V+ LK+G + ++ + Sbjct: 254 EKFG-RDNIWEGHLATELWTTETEVRCVLDEQQMPLSKVLDLKVGDTLMLNVTPESEVSV 312 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 A + + +GR G++ +R+ I+ D Sbjct: 313 RAGSIPLTTGRMGRKGQHIAVRVEGPISTD 342 >gi|226941271|ref|YP_002796345.1| flagellar motor switch protein FliM [Laribacter hongkongensis HLHK9] gi|226716198|gb|ACO75336.1| FliM [Laribacter hongkongensis HLHK9] Length = 329 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 7/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + + +IS + K+S I + + + + Sbjct: 57 ERFARNLRIGLFNFIRRNAEISVGPVKVQKYSEFIRNLVVPTNLNLCHVKPLRGTALLIF 116 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++NL G+ ++ R + E+++ +R + + + + Sbjct: 117 DPDLVFLVVDNLFGSDGRYHVRVEGRDFTPTEQRIIRRLLDVVFSEYQKAWEPVYPIEFL 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N E V ++ + + F + +P +++ LSS Sbjct: 177 YMR-SEMNTQFANI-ATPTEVVVSMTFRIELGAGGGDFHVCMPYS-MVEPIRDQLSSTMA 233 Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + +R+ V + + + TL D++ LK G VIP E A + Sbjct: 234 ADRTEIDNRWVSLLSRQVQIAEVELVATLAEAQITLGDILNLKTGDVIPVEIPESIVADV 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 S G + C G Y +R+ + + Sbjct: 294 S--GIPVLDCRYGTANGQYALRVERLLAGAHEL 324 >gi|114570494|ref|YP_757174.1| flagellar motor switch protein FliM [Maricaulis maris MCS10] gi|114340956|gb|ABI66236.1| flagellar motor switch protein FliM [Maricaulis maris MCS10] Length = 376 Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 101/269 (37%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 101 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAQQLDNYGLLTVD 160 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R I + Q + + + Sbjct: 161 SNLIYSIVDVLLGGRRGTSAMRIEGRPYTTIERMLVQRMIEVVLGDAKQAFAPLTDVEFD 220 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 LE + + + + +E+ L++P TL ++ L+ Sbjct: 221 LERVETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 278 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ ++ +L V LK+G + + L Sbjct: 279 EKFG-RDNIWEGHLATELWSTKMEVQAVLDEQRVSLGTVANLKVGDTLYLDASPSSDVEL 337 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 + +GR+G N +R++ ++ Sbjct: 338 RCGQVPLTRGRMGRIGHNVALRLSGPLSP 366 >gi|302383953|ref|YP_003819776.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides ATCC 15264] gi|302194581|gb|ADL02153.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides ATCC 15264] Length = 356 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 99/270 (36%), Gaps = 6/270 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 80 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 139 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + I A N Sbjct: 140 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILADAQAAFEPLTPVHFN 199 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 200 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRVELLLPYATLEPIRKMLLQQFMG 257 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ + L V+ LK+G + + + Sbjct: 258 EKFG-RDNIWEGHLATELWTTDTEVRAVLDEQSCPLSTVLNLKVGDTLMLNATPDSDISI 316 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + +GR G++ IR+ I+ + Sbjct: 317 RCGSIPVTTGRMGRKGQHIAIRVEGPISVE 346 >gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC2047] Length = 329 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 20/275 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + + ++ ++ KFS S + Sbjct: 63 ERFARFTEQSMFNLLRETPVVTAAKIENIKFSEYTQMLGIPSSLSLVKIHPLRGTAMFVL 122 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV+ L++ G + R + E+++ ++ ++Q+ + Q T + Sbjct: 123 DADLVVNLVDRFFGG-GVHDNAIGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMD---- 177 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 D +YL N +E V + IE + IP +L+ + Sbjct: 178 ----IDFEYLSNEENPAMIKAISPSEVVVLSTFEIKIEEKGGRIQVAIPYS-MLEPVREA 232 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S + +N+ D + R +V I R+ +K TL++++ K G VIP E Sbjct: 233 LDSGVQVDNEYTDGNWAEALQRDLRYASVPISCRVAERKITLREILNFKAGDVIPIDMPE 292 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + IL ANG IY +G ++ ++I +I+ Sbjct: 293 SS--ILMANGVPIYEAAVGASNEHLALKIKRQIDR 325 >gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix] Length = 324 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 33/267 (12%), Positives = 86/267 (32%), Gaps = 7/267 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + KFS +HS + Sbjct: 60 ERFARHLRVRLFNMLRRSAELSVVGTRVSKFSEYMHSLFVPTSLNLVRAHPLHGTGLFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + +E ++ + + + + Sbjct: 120 DPKLVFILVDNFFGGDGRYHTRIEGRDFTPMEMRVVHGILEGAFEDMVKAWQPVMDLRFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + E V ++ ++ + +P +++ L + + Sbjct: 180 FLNSEV--NPQFANIVSPTEIVVISEFHIELDGGGGNLHFTLPYS-MIEPIREQLDTGLQ 236 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ D + + V + + + + T+++++ ++ G +IP E L Sbjct: 237 SDRSDVDQRWMKALEEEIQDAEVEVSSTLTETEVTVQELLDIQPGDIIPINLPE--TVTL 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 ++ + G I++TDRI Sbjct: 295 KVEDIPLFRGKFGVSDGKNAIQVTDRI 321 >gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121] Length = 322 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 96/277 (34%), Gaps = 20/277 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D+S Q KF +H+ + S Sbjct: 58 ERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRPLRSTALFIL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q+ L + + Sbjct: 118 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAWAPVLSVE-- 174 Query: 160 LEDFYDIDYLKKNTNR-LSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +DY+ N ++N E V ++ ++ + +P +++ Sbjct: 175 ------LDYIGSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYS-MIEPVREL 227 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S + + + + +LNV + + L+DV+ K G +IP E Sbjct: 228 LDAGVQSDVDEKDDRWGKSLQQDVKELNVELSAAVAHVDVPLQDVLKFKAGDIIPVDIPE 287 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ANG +LG + Y++++ + + Sbjct: 288 --FITVRANGLPTIKGKLGVSNEKYSVQVVENYKLPK 322 >gi|188582489|ref|YP_001925934.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] gi|179345987|gb|ACB81399.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001] Length = 405 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 94/273 (34%), Gaps = 4/273 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + SW + + Sbjct: 122 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADSWEGSGLVTVE 181 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L + ++ LLG + +L R +T+E L +R + I L Sbjct: 182 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEMSFQPLSPVRFG 241 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ T I + + ++ ++ P T+ + + S Sbjct: 242 IDRIETNPRFATIT--RPGNAAILITLKLDMDGRGGGMQILFPYATVEPIRDLLMQSFMG 299 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + A + +Q +V ++ ++ LK V+ LK+G + F + + Sbjct: 300 ERLGRDQVWESHLATEIWQADVEMEAVLHEVTLPLKRVLNLKVGDTLMFDRKPSDLITVR 359 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GR+ +++ + + +L Sbjct: 360 CGDWALTQGRIGRIDDAIAVQVARPLRQSRTTL 392 >gi|121997289|ref|YP_001002076.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1] gi|121588694|gb|ABM61274.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1] Length = 381 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 113/308 (36%), Gaps = 18/308 (5%) Query: 8 KNTSPLHPILL---ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 +++ L P R+ G T+E I+ G L++ L + + ++S T Sbjct: 30 EDSGELRPYTFTAEERIVR--GRMPTLEMINERFGRLFRIGLFNMLR----RTPEVSVTG 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + KF +H+ + + + LV +++N G ++ Sbjct: 84 VEMMKFGEYVHTLFVPTSLNIIRVPPLRGSGLFVIDPKLVFLVVDNFFGGGGHFYLKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN-RLSNEFVTT 183 R + E+++ + + Q L + + ++ +++ + N E V Sbjct: 144 REFTPTEQRVIRLMLDQAFDDLREAWNPVLGVDF---EYVNMEVNPQFANIVSPTEVVVV 200 Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVN 241 ++ ++ + +P T+++ L + +S+ D + V Sbjct: 201 SKFHVELDGGGGDIHVTLPY-TMVEPIREILDAGVQSDRNDVDDRWAKALREEMKTAPVT 259 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + + TL+D++ LK G VIP E+ + ++ G N +RI Sbjct: 260 LHSTLARSEITLRDLMHLKAGDVIPIEMPERVVVEVE--EVPVFYGTYGVCEGNAALRID 317 Query: 302 DRINFDQK 309 +++ ++ Sbjct: 318 EKVQAPER 325 >gi|163852467|ref|YP_001640510.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|218531223|ref|YP_002422039.1| flagellar motor switch protein FliM [Methylobacterium chloromethanicum CM4] gi|240139804|ref|YP_002964281.1| flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|254562219|ref|YP_003069314.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] gi|163664072|gb|ABY31439.1| flagellar motor switch protein FliM [Methylobacterium extorquens PA1] gi|218523526|gb|ACK84111.1| flagellar motor switch protein FliM [Methylobacterium chloromethanicum CM4] gi|240009778|gb|ACS41004.1| flagellar motor switch protein FliM [Methylobacterium extorquens AM1] gi|254269497|emb|CAX25463.1| flagellar motor switch protein FliM [Methylobacterium extorquens DM4] Length = 406 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 95/273 (34%), Gaps = 4/273 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + +W + + Sbjct: 123 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADAWEGSGLVTVE 182 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L + ++ LLG + +L R +T+E L +R + I L Sbjct: 183 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLELSFQPLSPVRFG 242 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ T I + + ++ ++ P T+ + + S Sbjct: 243 IDRIETNPRFATIT--RPGNAAILITLKLDMDGRGGGMQILFPYATVEPIRDLLMQSFMG 300 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + A + +Q +V+++ ++ LK V+ LK+G + F + + Sbjct: 301 ERLGRDQVWESHLATEIWQADVDMEAVLHEVTLPLKRVLNLKVGDTLMFDRKPSDLITVR 360 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GR+ ++I + + +L Sbjct: 361 CGDWALTQGRIGRIDDAIAVQIARPLRQSRTTL 393 >gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105] gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105] Length = 348 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 108/312 (34%), Gaps = 11/312 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 H+ P + R+ G T+E I + + + M +IS Sbjct: 30 THEGVRPYNLATQERIVR--GRMPTLEII----NERFARLIRIGLFNFMRRSPEISVGPV 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + K++ I + + ++ N +LV +++NL G ++ R Sbjct: 84 KVLKYNEFIRNLVVPTNLNIMAMKPLRGNALFIFDPSLVFAVIDNLFGGDGRFHTRVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + I + + P +E V T + Sbjct: 144 DFTQTEQRIIARMLEVIREEFVKAWAPVFPLKPEYLRSEMHTQFA--NIATPSEIVVTTS 201 Query: 186 MNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ + S + IP T+ L+ S Q + + ++ V++ Sbjct: 202 FSIELGAGGGSLHICIPYSTMEPIRDLLYSSMQGDQAEPDKRWVTMLKKQVQMAEVDLVA 261 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + T+ D++ L+IG VIP + +++C G G Y +++ + + Sbjct: 262 SLASTQLTVADIMELRIGDVIPIEI--DKVIEARVDNVPVFNCSYGTSGGQYALKVEEVL 319 Query: 305 NFDQKSLKNFLH 316 +S + L+ Sbjct: 320 AVSNESHADALN 331 >gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense DSM 14796] Length = 323 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 116/282 (41%), Gaps = 14/282 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + G L L + + M LD +++ + I+S + S Sbjct: 52 RTLELIHETYGRLVATSLSSLVRGSMRLD----FSAIDQVPYEEFINSLIPPAMIVIISW 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + N+ + L++ LLG S +P R+ + +E L + + + L + Sbjct: 108 ENTGLSMVLEMNLNITLALVDRLLGGSG--LPPPSPRAPTDIENALIAKLVDRHLVALEE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T S + +NE V I M++ I +++ L IP LL+ Sbjct: 166 AWRTVYPVSLTFVGTETNPEFAQIV--PANEMVVLITMDIGIGDLSGIMSLAIPYS-LLE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TLKDVVTLKIGQV 264 + LS+Q + + D YQ LNV ++ ++ L L+D++ L++G Sbjct: 223 PIVNHLSAQRFFVKKKAE-NDIEREYVYQHVLNVMVNLQVCLGHMHIPLRDLINLRVGDT 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + + + K+ + GRVGKN I+IT+ + Sbjct: 282 LLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITEVLRE 323 >gi|197104384|ref|YP_002129761.1| flagellar motor switch protein FliM [Phenylobacterium zucineum HLK1] gi|196477804|gb|ACG77332.1| flagellar motor switch protein FliM [Phenylobacterium zucineum HLK1] Length = 358 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 102/269 (37%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + S ++ + Sbjct: 83 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILSVFRAEELNNYGLLTVD 142 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + + A + S Sbjct: 143 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMVEVVLADAREAFEPLTPVSFT 202 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 203 LDRLETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 260 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + N+ + ++ ++ +L+ V+ LK+G + + L Sbjct: 261 EKFG-RDNIWESHLATELWTTNMEVRAVLDEQQVSLQKVLDLKVGDTLMLNATPDSLIEL 319 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 A + +GR + +R+ ++ Sbjct: 320 RAGAIPLTRGRMGRRNHHIAVRVEAPLSP 348 >gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC 25196] Length = 326 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 14/308 (4%) Query: 2 RGQSI-HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 QS + P + R+ G T+E I + + L M ++ Sbjct: 25 SEQSTANPGFRPYNLATQERIVR--GRMPTLEII----NERFARLLRLGLFNFMRRSANV 78 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + KFS + + + + LV +++NL G +P Sbjct: 79 TAGPVRVMKFSEFVRNLAAPSNLNLVHIKPLRGTSLFVFDPTLVFLVVDNLFGGDGRFLP 138 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 + R + E+++ +R + + + + NE Sbjct: 139 KTEGRDFTQTEQRIIQRLLNLVFDSYGKSWHPVYPIEFEYLRAET--NTQFANVATPNEV 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQL 238 V + +V + +P +L+ LSS + E + + +++ Sbjct: 197 VVATTFEVNFGSVVGEMHICMPYS-ILEPIRDLLSSTLQGEALEVDKRWVGRLSKQVQSA 255 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V + + + L ++ +K+G VIP E S +G + C+ G Y + Sbjct: 256 EVTLLANLTHAQVRLDQILNMKVGDVIPLDIPE--FVTASVDGVPVMECKYGISNGRYAL 313 Query: 299 RITDRINF 306 R+ + Sbjct: 314 RMEKMLAS 321 >gi|292493590|ref|YP_003529029.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4] gi|291582185|gb|ADE16642.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4] Length = 349 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 96/280 (34%), Gaps = 24/280 (8%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +D++ + Q KFS IH+ + +S Sbjct: 61 ERFVRQLRRSLFNLFRRAIDVTVSGMQMVKFSEYIHTLFVPTSLNMVQMSPLQGTSLFVF 120 Query: 100 SNNLVITLLENLLGASH-----ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 LV +++N G S + ++ R + E ++ + + ++ A L Q Sbjct: 121 DPKLVFMMVDNYFGGSGRAYARRSYARIEGREFTPTEVRVVQLVLEKVFADLEQAWEPVL 180 Query: 155 ESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +YL+ N +E V + + F + +P +L+ Sbjct: 181 AV--------HFEYLQAEPNPQFATIVSPSEVVVVSTFFVEFDGGGGEFHITLPYA-MLE 231 Query: 209 TTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L +S + E K + V + + + +L++++ L+ G ++P Sbjct: 232 PIRELLEVGRQSGSSQVDERWDQALQEKILEAEVELSCTLAETQLSLREILALEPGDILP 291 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + A+G ++ G NY +++ + + Sbjct: 292 IELP--SILTAQADGVPVFRARYGVHNDNYALKVVEPLPH 329 >gi|220924581|ref|YP_002499883.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS 2060] gi|219949188|gb|ACL59580.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS 2060] Length = 403 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 101/276 (36%), Gaps = 4/276 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W ++ + Sbjct: 120 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPMPTLLGVFKADLWENSGLLTVD 179 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++L L+ LLG T +L R +++E L +R + I L Sbjct: 180 SSLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDLEASFQPLSPVRFQ 239 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ + R +N I++ + +E ++ P T+ + L S Sbjct: 240 IDRIES-NPRFATITRPAN-AAILIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQSFMG 297 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + A + +Q ++ ++ ++ L+ V++L++G I F + L Sbjct: 298 EKLGRDHVWEGHLATEIWQADLAVEAVLHEMTLPLRRVLSLEVGDTIMFDAKPTDLITLR 357 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GR+ + +++T + + + F Sbjct: 358 CGDWALTQGRIGRLDDSIAVQVTRPLRRARTTFAAF 393 >gi|221235077|ref|YP_002517513.1| flagellar motor switch protein FliM [Caulobacter crescentus NA1000] gi|300680949|sp|B8GXB5|FLIM_CAUCN RecName: Full=Flagellar motor switch protein FliM gi|220964249|gb|ACL95605.1| flagellar motor switch protein fliM [Caulobacter crescentus NA1000] Length = 374 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 44/315 (13%), Positives = 110/315 (34%), Gaps = 20/315 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54 N + +L L+G D +T + + + + LP + Sbjct: 53 NQDEIDSLLGFDLSGDGSDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 112 Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 +V++S + S +F ++S + + + + +NL+ ++++ LLG Sbjct: 113 SDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 172 Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T ++ R +T+E+ L +R I + L S +L+ Sbjct: 173 RRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVSFSLDRLETNPRFAAIA 232 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 + + + + +E+ L++P TL ++ L+ K + Sbjct: 233 RPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 289 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + + + + ++ ++ L V+ +++G + + L A + +GR Sbjct: 290 ATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGR 349 Query: 292 VGKNYTIRITDRINF 306 + +R + Sbjct: 350 RNHSIAVRAEAPLTP 364 >gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB] gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB] Length = 338 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 97/273 (35%), Gaps = 7/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M + +IS + K+S I + + Sbjct: 59 ERFARYLRIGLFNYMHRNAEISVGPIRVQKYSEFIRNLVVPTNLNLVIAKPLRGTALFVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ + + + ++ + + Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIQGLLNVVFTEYSKSWKPVYDINFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N +E V + + + + P +L+ L S + Sbjct: 179 YIR-SEMNSQFANI-ATPSEIVVSTTFTLEFGGATADMHICFPYS-MLEPIRDLLYSTMQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ + + I ++ V I + K TL ++ LK+G VIP +K A++ Sbjct: 236 SDQLSSDKRWIGTLRKQLQGAEVEIVALLGSGKITLGQILKLKVGDVIPLHIPDKIEALV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + C G+ Y +++ I ++ Sbjct: 296 --DSVPLMECTYGQQSGQYALKVDRFIASSPET 326 >gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688] gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4] gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688] Length = 334 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 96/270 (35%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M V++S + K+S + + + ++ + Sbjct: 58 ERFARLLRIGLFNFMRRSVEVSVGPVRISKYSEFVRNLVVPTNLNLVHMNPLRGTGLMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++++N+ G ++ R + E+++ +R +A + + + Sbjct: 118 DPSLVFSIVDNMFGGDGRFHTRIEGRDFTQTEQRIIQRVLAIVIENYEKSWEPVYQVKFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE + ++ + P +++ L+S + Sbjct: 178 YLR-SEMNTQFANI-ATPNEVIVATTFSIELGPAGGEIHFCFPYS-MIEPVRDLLTSSLQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++ V + + + L DV+ +K+G VIP E A + Sbjct: 235 GEVLGVDKRWVRLMTQQIQAAEVELVANLAKARMQLGDVLNMKVGDVIPLNISETIEAHV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + C+ G Y++R+ + + Sbjct: 295 --DNVPVMECKYGVFNGQYSLRVEKLLRAN 322 >gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans] gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] Length = 332 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 5/266 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + I Sbjct: 58 ERFSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGIGLIVL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV L++NL G ++ R + E+++ +R + I + Sbjct: 118 DPNLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQN 218 +++ N NE V + + V+ +P + L++ S Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTSSMQG 235 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + I ++ V I + K TL D++ +KIG +I E Sbjct: 236 ETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPE--QVTAE 293 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 +G + C G++ Y +R+ I Sbjct: 294 VDGVPVMECSYGKLNGQYALRVEKLI 319 >gi|295688787|ref|YP_003592480.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756] gi|295430690|gb|ADG09862.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756] Length = 369 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 95/269 (35%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 94 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 153 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R I + L + + Sbjct: 154 SNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMIEVVLHDLKSAFEPLHPVAFS 213 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + +E+ L++P TL ++ L+ Sbjct: 214 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 271 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ ++ L V+ +++G + + L Sbjct: 272 EKFG-RDNIWEGHLATELWTTQMEVRAVLDEQQLPLSRVLNMQVGDTLMLNATPDSLVEL 330 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 A + +GR + +R + Sbjct: 331 RAGAIPLTRGRMGRRNHSIAVRAEAPLTP 359 >gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum JL354] Length = 339 Score = 172 bits (437), Expect = 4e-41, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 6/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +++S S +F ++ + + + +W + Sbjct: 69 ERMVRSFATSMRNLTSDAIEVSLDDIASVRFGDFMNRVPLPCMIAVFKVPAWQDYGLVTI 128 Query: 100 SNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 NL+ +++ LLG ++ R+ +T+E L + I + + + Sbjct: 129 EANLIYAVVDALLGGRKGAAPRKIEGRAFTTIETTLVSKMIELVLREFSTAFEPIAPITM 188 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 LE + + + ++ +F +++P T L+ LS + Sbjct: 189 ELERIETSPRFAAIAGPTN--VASAATFAVDMDGRGGNFTILLPFAT-LEPVRGKLSQRF 245 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 E D D + + V I T + ++ L DV +L+IGQ IPF Sbjct: 246 MGEKLGGDNTWRDHMRNEILRTEVEIYTVLGEREMRLADVHSLEIGQTIPFDVTPDDPFE 305 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + G + ++GR + I I D I Q Sbjct: 306 VCCGGVPLARAQIGRQRNHVAIGIVDTIKQGQ 337 >gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp. Marseille] gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp. Marseille] Length = 332 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 91/266 (34%), Gaps = 5/266 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + I Sbjct: 58 ERFSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGTGLIVL 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV L++NL G ++ R + E+++ +R + I + Sbjct: 118 DPNLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQN 218 +++ N NE V + + V+ P + L++ S Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTSSMQG 235 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + I ++ V I + K TL D++ ++ G +IP + A + Sbjct: 236 ETLEMDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTITAEV- 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 + + C G++ Y +R+ I Sbjct: 295 -DSVPVMECSYGKLNGQYALRVEKLI 319 >gi|34498585|ref|NP_902800.1| flagellar motor switch protein FliM [Chromobacterium violaceum ATCC 12472] gi|34104439|gb|AAQ60797.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 334 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 95/274 (34%), Gaps = 7/274 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + + +IS + K+S I + + + + Sbjct: 58 ERFARNLRIGLFNFLRRNAEISVGPVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++NL G+ ++ R + E+++ R + + + Sbjct: 118 DPDLVFLIVDNLFGSDGRYHVRVEGRDFTPTEQRIIHRLLEVVFTECQKAWEPVYPIEFV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N E V + ++ + F + +P +++ LSS + Sbjct: 178 YLR-SEMNTQFANI-ATPTEVVVAMTFHIELGAGGGDFHICLPYS-MVEPIRDLLSSTMQ 234 Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ ++ + V + + K TL ++ LK G V+ E+ A + Sbjct: 235 ADRTEVDNRWVNLMTHQVQAAEVELVASLAHAKVTLGQILNLKNGDVVMIEIPERVEADV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 S G ++ G V Y +++ + + L Sbjct: 295 S--GIPVFEASYGTVQGRYALKVEKILAGTNEFL 326 >gi|23009967|ref|ZP_00050822.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 316 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 96/274 (35%), Gaps = 6/274 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W + + Sbjct: 33 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADPWEGSGIVTVE 92 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L + ++ LLG + +L R +T+E L +R I I + L Sbjct: 93 QTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMNLVRRLIDIILSDLELSFQPLSPVRFG 152 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ T I++ + ++ ++ P T+ ++ L+ Sbjct: 153 IDRLETNPRFATIT--RPGNAAILISLKLDMDGRGGGMQILFPYATVESIRDLLMQSFMG 210 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + A + +Q ++ ++ ++ LK V+ LK+G + F + + Sbjct: 211 ER-LGRDQVWESHLATEIWQADLEMEAVLHEVTLPLKRVLGLKVGDTLMFDRKPTDLITV 269 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + +GR+ ++I + + +L Sbjct: 270 RCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTL 303 >gi|167645399|ref|YP_001683062.1| flagellar motor switch protein FliM [Caulobacter sp. K31] gi|167347829|gb|ABZ70564.1| flagellar motor switch protein FliM [Caulobacter sp. K31] Length = 377 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 108/313 (34%), Gaps = 20/313 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54 N + +L ++G D +T + + + + LP + Sbjct: 56 NQDEIDSLLGFDMSGDGNDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 115 Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 +V++S + S +F ++S + + + + +NL+ ++++ LLG Sbjct: 116 SDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 175 Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T ++ R +T+E+ L +R + + S L+ Sbjct: 176 RRGTAAMRIEGRPYTTIERVLVQRMVEVVLHDAKAAFEPLHPVSFTLDRLETNPRFAAIA 235 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 + + + + +E+ L++P TL ++ L+ K + Sbjct: 236 RPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 292 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + + + + ++ ++ L V+ LK+G + + L A + +GR Sbjct: 293 ATELWTTQMEVRAVLDEQQLPLSRVLDLKVGDTLMLNATTDSLVELRAGSIPLTRGRMGR 352 Query: 292 VGKNYTIRITDRI 304 + +R + Sbjct: 353 RNHSIAVRAEAPL 365 >gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum magnetotacticum MS-1] Length = 269 Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 26/243 (10%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P+ ++ RL D SS+ S SG Sbjct: 51 DRLPMLHVVFDRLATACSDAAKHLAASSTF---------------------YSLNGIASG 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F + ++ N V W + +G + + T++E L G+ P R+ S Sbjct: 90 RFGEFLDAYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPPVEDERNFS 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E ++A+ Q+ L ++ LE + R SN+ V + Sbjct: 150 AIELRIAQMVFEQVGKALESSFGLVSQTPFRLER-METRMEFAVIGRRSNKAVQA-KFLL 207 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 N L+IPQ T+L +LS E+ + D + A + + NV + + Sbjct: 208 QALNRGGEMFLVIPQ-TVLNPLRPALSKVLTGESAARDPHWAEQIAAEVQKTNVRLKAVL 266 Query: 247 NLK 249 + Sbjct: 267 EER 269 >gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA] Length = 336 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 89/254 (35%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + +IS + K+S I + + + NL+ +++NL G Sbjct: 74 MRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFG 133 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 134 GDGRFHMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRMEMHTEFA--N 191 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V T + ++ + + + +P T+++ L+S + E + + Sbjct: 192 VATPNEVVITTSFSIELGSNGGDVHICMPY-TMIEPIRDRLTSAIQGEALEVDKRWLRLL 250 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + K + D++ +K+G VIP C +G + C G Sbjct: 251 SQQVQTAEVELIADLATAKVQVSDILNMKVGDVIPLEL--DDCVTAKVDGVPVMECNYGT 308 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 309 FNGQYALRVNRMLN 322 >gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J] gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D] Length = 335 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 86/254 (33%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M + +IS + K+S I + + + NL+ +++NL G Sbjct: 73 MRRNAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTDVEQRIIQRMLQLVFEHYARAWQPVYPIDFEFLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V T ++ + N + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVTTTFSLELGNNGGDVHICMPY-TMIEPIRDRLTSAIQGEALEVDKRWLRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVELIADLATANVQVSDILNMKVGDVIPLEL--DDVVTAKVDGVPVMECNYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|83858803|ref|ZP_00952325.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83853626|gb|EAP91478.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 385 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 100/269 (37%), Gaps = 6/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 110 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAKQLDNYGLLTVD 169 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R I + A Q + E + Sbjct: 170 SNLIYSIVDVLLGGRRGTSAMRVEGRPYTTIERTLVQRMIEVVLADARQAFAPLTEVDFD 229 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 230 LDRVETNPRFAAIARPANAA--ILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMG 287 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K + A + + + + ++ + L +V+ LK+G + L Sbjct: 288 EKFG-RDNIWESHLATELWSTKMEVSAVLDEMQKPLGEVMQLKVGDTLMLDAGPDGLIEL 346 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 + +GR+G N +R+ ++ Sbjct: 347 RCGTVPLAHGHMGRIGHNIGVRLDRPLSA 375 >gi|207728361|ref|YP_002256755.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2] gi|206591607|emb|CAQ57219.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2] Length = 335 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R +A + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVIPLEL--DDSVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|224826626|ref|ZP_03699727.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002] gi|224601227|gb|EEG07409.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002] Length = 335 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 94/264 (35%), Gaps = 7/264 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + + +IS + K+S I + + + + Sbjct: 58 ERFARNLRIGLFNFIRRNAEISVGPVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++NL G+ ++ R + E+++ +R + + + Sbjct: 118 DPDLVFLVVDNLFGSDGRYHVRVEGRDFTPTEQRIIRRLLEVVFTEYQKAWEPVYPIEFV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N E V + ++ + F + +P +++ LSS + Sbjct: 178 YLR-SEMNTQFANI-ATPTEVVVAMTFHIEMGAGGGEFHVCLPYS-MVEPIRDVLSSTMQ 234 Query: 220 SENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + +R+ V++ + TL V+ LK G V+ E A + Sbjct: 235 ADRTEVDNRWVSLMSRQVQAAEVDLVATLAGTSVTLGQVLNLKQGDVVTLEIPEMIIADV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRIT 301 S G + C G V +Y +++ Sbjct: 295 S--GIPVVECTYGTVQGHYALKVE 316 >gi|300113610|ref|YP_003760185.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113] gi|299539547|gb|ADJ27864.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113] Length = 336 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 99/299 (33%), Gaps = 23/299 (7%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKE 79 + I + L + + + F+ + +++ Q KFS +H+ Sbjct: 41 DFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQVLKFSEYLHTLFM 100 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + LV L++ G S E +L NR + E + + + Sbjct: 101 PTSLNLVQIHPLRGAGLFVFDPKLVFMLVDRYFGGSGEFYNRLENREFTPTEMHIIQLVL 160 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENV 193 + L Q + +YL+ N +E V ++ E Sbjct: 161 ERTFTDLKQAWEPVL--------AINFEYLQTEFNPRLATIASPSEIVVVSTFHVEFEGG 212 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKT 251 F + +P TLL+ L + K + D + V + + + Sbjct: 213 GGEFHIALPY-TLLEPVRELLDTGKKDDFTQADGGWNQALRKNVSDAEVELSCTLTEIRL 271 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +LK+V+ LK G ++P + A+G ++ G + +++ +R+ + Sbjct: 272 SLKEVLALKSGDILPIELP--STVTALADGVPVFRVRYGIHNSSRALKVVERLLSPESF 328 >gi|329849711|ref|ZP_08264557.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum C19] gi|328841622|gb|EGF91192.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum C19] Length = 388 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 102/281 (36%), Gaps = 6/281 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + +V++S + S +F ++S + + + + Sbjct: 111 RLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFRAEELDNYGLLTVD 170 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L +R + + Q + N Sbjct: 171 SNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDARQAFEPLTAVNFN 230 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L+ + + + +E+ L++P T L+ L Q Sbjct: 231 LDRLETNPRFAAIARPA--NAAILVKLRIDMEDRGGRIELLLPYAT-LEPIRKMLLLQFM 287 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E D A + + + + ++ ++ L V+ LK+G+ I + + L Sbjct: 288 GEKFGRDNIWESHLATELWTTQMEVRAVLDEQQVPLSRVLNLKVGETIVLNAQADSPVQL 347 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318 + + +GR G + +R+ + K + K+ Sbjct: 348 RCGQIPLTTGRMGRKGHSIAVRVDTPLALSTKRRLTQMKKK 388 >gi|300696948|ref|YP_003747609.1| flagellar motor switching and energizing component [Ralstonia solanacearum CFBP2957] gi|299073672|emb|CBJ53192.1| flagellar motor switching and energizing component [Ralstonia solanacearum CFBP2957] Length = 335 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R +A + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVIPLEL--DDFVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46] Length = 403 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 4/276 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V+++ + S +F +++ + W ++ + Sbjct: 120 RMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKADLWENSGLVTVD 179 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL L+ LLG T +L R +++E L +R + I L Sbjct: 180 SNLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDLEASFQPLSPVRFQ 239 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQN 218 ++ + R +N I++ + +E ++ P T+ + L S Sbjct: 240 IDRLES-NPRFATITRPAN-AAILIDLKLDMEGRGGLLQILFPYATIEPIRDLLLQSFMG 297 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + A + +Q V ++ ++ LK V+ L++G I F + L Sbjct: 298 EKLGRDHVWEGHLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTILFDAKPTDLITLR 357 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + +GR+ + +++T + + + F Sbjct: 358 CGDWALSQGRIGRLEDSIAVQVTRPLRRARTTFAAF 393 >gi|77165630|ref|YP_344155.1| flagellar motor switch protein FliM [Nitrosococcus oceani ATCC 19707] gi|254434449|ref|ZP_05047957.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27] gi|76883944|gb|ABA58625.1| Flagellar motor switch protein FliM [Nitrosococcus oceani ATCC 19707] gi|207090782|gb|EDZ68053.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27] Length = 336 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 102/305 (33%), Gaps = 22/305 (7%) Query: 23 GKLGDKKTIE--------KISSSL-------GYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 LGD+KTI +I+ + + + + +++ Q Sbjct: 29 RVLGDEKTIRPYDFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQV 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 KFS +H+ + + LV L+E G S + +L NR Sbjct: 89 LKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENREF 148 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E + + + + A L Q + L + S+E V + Sbjct: 149 TPTEVHIIQLVLERTFADLKQAWEPVLAVNFEYLQTELNPRLATIAS--SSEMVVVSTFH 206 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245 + E F + +P TLL+ L++ K + D + V + Sbjct: 207 VEFEGGGGEFHIALPY-TLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCT 265 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +L +++ LK G ++P + A+G ++ G + +++ +R+ Sbjct: 266 LTEIQLSLGEILALKSGDILPIELP--STVTALADGIPVFRVRYGIHHGSRALKVVERLL 323 Query: 306 FDQKS 310 + Sbjct: 324 SPESF 328 >gi|300693352|ref|YP_003749325.1| flagellar motor switching and energizing component [Ralstonia solanacearum PSI07] gi|299075389|emb|CBJ34684.1| flagellar motor switching and energizing component [Ralstonia solanacearum PSI07] Length = 335 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFDHYGKAWQPIYPIEFEALRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTSFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G VIP +G + C G Sbjct: 250 SQQVQTAEVELVAHLANANVQVSDILNMKVGDVIPLEL--DDSVTAKVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|325981184|ref|YP_004293586.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212] gi|325530703|gb|ADZ25424.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212] Length = 325 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 93/271 (34%), Gaps = 7/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M VDI+ + KFS + + + + Sbjct: 58 ERFARLLRIGLFNFMRRTVDIAVGPVKVIKFSEFVRNLVVPTNLNMVHMKPLRGTALFVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L+ +++NL G ++ R + E+++ +R + + + + Sbjct: 118 DPELIFLIVDNLFGGDGRYHTRVEGRDFTQTEQRIIQRLLGVVFDEYEKSWKSVYPIQFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V + ++ + N + IP +++ +L S + Sbjct: 178 YVRSEMNPQFATI--ATPNEVVVCVTFDIDMGNKGGGLHVCIPYS-MVEPIRDTLYSALQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + I +++ V + + K T + +++++ G +IP + + Sbjct: 235 GDHLEVDKRWIKLLSQQVQGAEVELVANLGGAKVTFEQILSMQSGDIIPLEIPKSISVCV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + +Y +R+ I+ + Sbjct: 295 --DGVPVMDCRYGTMNGHYALRVNSMISRSE 323 >gi|17548599|ref|NP_521939.1| flagellar motor switch protein FliM [Ralstonia solanacearum GMI1000] gi|17430847|emb|CAD17529.1| probable flagellar motor switch protein flim [Ralstonia solanacearum GMI1000] Length = 335 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G V+P +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL--DDSVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|257095345|ref|YP_003168986.1| flagellar motor switch protein FliM [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047869|gb|ACV37057.1| flagellar motor switch protein FliM [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 334 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 96/272 (35%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M +IS S + K+S + + + Sbjct: 59 ERFARYLRIGLFNYMHRSTEISVGSIRVQKYSEFTRNLVVPTNLNLINAKPLRGTALFVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++N+ G ++ R + E+++ K + + ++ + + Sbjct: 119 DPSLVFLVVDNMFGGDGRFHTRVEGRDFTATEQRIIKGLLGVVFTEYSRSWKPVYDLTFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N +E V ++ + + P +++ L S + Sbjct: 179 YVR-SEMNSQFANI-ATPSEIVVATTFSIEFGGSTADLHICFPYS-MIEPIRDLLFSTMQ 235 Query: 220 SENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ S D ++ V I R+ +L+ ++ +K+G ++P EK I Sbjct: 236 SDQLSTDRRWVIMLRKQLTNAEVEITARLATATVSLRQILEMKVGDIVPIDIPEK--VIA 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + C G+ G Y I+I + + + Sbjct: 294 QVDDVPLMECRYGQQGGQYAIKIDHFMTIENQ 325 >gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus KT] Length = 335 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 97/270 (35%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + + Sbjct: 58 ERFARLLRIGLFNFLRRTTEVSVGPVKISKYSEFIRNLVVPTNLNLVQMKPLRGTALMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++NL G ++ R + E+++ +R +A + + + Sbjct: 118 DPTLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRVLAIVFETYAKSWEPVYKLEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--Q 217 +++ N NE V + N+ + + + P +++ L+S Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVVSTTFNIELGSASGEIHFCFPYS-MIEPIRDLLTSPLQ 234 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + + ++ V + + + TL D++ +K+G VIP E+ A + Sbjct: 235 GEALGVDKRWVRLMTQQIQSAEVMLIADLAKAEMTLGDILNMKVGDVIPLSISEEIEAKV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + C+ G Y +R+ + + Sbjct: 295 --DNVPVMQCKYGVFNGQYALRVEKLLRSN 322 >gi|83747640|ref|ZP_00944676.1| FliM [Ralstonia solanacearum UW551] gi|207739721|ref|YP_002258114.1| flagellar motor switch protein flim [Ralstonia solanacearum IPO1609] gi|9438185|gb|AAF87587.1|AF283286_1 flagellar motor switch [Ralstonia solanacearum] gi|83725692|gb|EAP72834.1| FliM [Ralstonia solanacearum UW551] gi|206593103|emb|CAQ60009.1| flagellar motor switch protein flim [Ralstonia solanacearum IPO1609] Length = 335 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 87/254 (34%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R +A + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G V+P +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPLEL--DDFVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|288942630|ref|YP_003444870.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM 180] gi|288898002|gb|ADC63838.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM 180] Length = 325 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 91/270 (33%), Gaps = 9/270 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L + +IS + KFS +HS + + Sbjct: 62 ERFARYLRVHLFNLLRRSSEISVIGARVTKFSEYLHSLYVPTSLNLVRVYPLHGTALFVF 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + +E ++ K + + + + Sbjct: 122 DPKLVFGLVDNFFGGDGRYYSRIEGRDFTPMEMRVIKNLLDASFSDMQKAWEPVMHLDF- 180 Query: 160 LEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 +F + + + N E V + ++ +E + + P +++ L + Sbjct: 181 --EFINAEVNPQFANIVSPTEIVVINDFHIELEGGGGNMHVTFPYS-MIEPIREVLDTGL 237 Query: 219 KSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ + + V I + + T++ ++ +K G +IP E + Sbjct: 238 QSDRSGVDQRWQRALEEEIPLAKVEISSVLTEVTLTVEQLLEVKPGDIIPVDLPE--TIV 295 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+ ++ + G I+I + I Sbjct: 296 LNVEDIPLFRGKFGVSNGINAIKIMEHIKH 325 >gi|186477685|ref|YP_001859155.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815] gi|184194144|gb|ACC72109.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815] Length = 332 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 89/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRTAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + S Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIIHKLLNLVFEHYTAAWKSVRPLSFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 TRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T ++++ +K G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQIPVTFQEILNMKAGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ ++ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAAEQM 326 >gi|299068765|emb|CBJ40005.1| flagellar motor switching and energizing component [Ralstonia solanacearum CMR15] Length = 335 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 86/254 (33%), Gaps = 7/254 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + + +IS + K+S I + + + NL+ ++++L G Sbjct: 73 LRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + VE+++ +R + + + Sbjct: 133 GDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAWQPIYPIEFEPLRMEMHTEFA--N 190 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPF 231 NE V + +M + + + +P T+++ L+S + E + + Sbjct: 191 VATPNEVVVSTRFSMELGSNGGDVHVCMPY-TMIEPIRDLLTSAIQGEALEVDKRWVRLL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 +++ V + + + D++ +K+G V+P +G + C G Sbjct: 250 SQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL--DDAVTARVDGVPVMECAYGT 307 Query: 292 VGKNYTIRITDRIN 305 Y +R+ +N Sbjct: 308 FNGQYALRVNRMLN 321 >gi|261855321|ref|YP_003262604.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus c2] gi|261835790|gb|ACX95557.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus c2] Length = 347 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 8/274 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + + VDIS + K+S H+ + + Sbjct: 58 LNERFARNFRIRLVSMLRRTVDISIEGVRMMKYSEYSHALYVPTSLTLVHVRPLKGTGLF 117 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + LV L++N G ++ R + E ++ R + Q + + + + Sbjct: 118 MMESQLVFKLVDNFFGGFG-MHAKIEGRDFTPTELRVITRVLEQAIDEVQRSWTPVYPVN 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 ++++ N E V + + +E F +++P +++ L Sbjct: 177 IQTVS-HEMNPQLANI-VSGTEVVVVNSFRIEVEGGGGKFDIVLPYS-MIEPIRDLLDGG 233 Query: 218 NKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + E R+ + ++ + ++ + +L D+ +++G V+PF E Sbjct: 234 MQGDRLEVDERWTQALKRELGRADIELVAQLGEMRMSLADIAHMEVGDVLPFEMPE--QV 291 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +L+A G +Y +LG N ++RI + + Sbjct: 292 VLTAQGLPLYQGKLGVHRGNKSVRIQSPVKERLE 325 >gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM 5305] Length = 368 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 102/294 (34%), Gaps = 11/294 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + + + L + + +++ S + + S + F+ Sbjct: 58 MRAFQALHEGFSREFGASLSGMLRSI----IEVKLISVDQLTYGEFVFSLENPTCFNLLF 113 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + + +++ +++ LLG + +R L+ +E +L R L Sbjct: 114 SDKLNGHLILDLNPSIIYPIVDRLLGGGKSSTQSYPSRPLTEIELRLVSRITKSAITALE 173 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 E + L + NE + I+ +++ + L IP T + Sbjct: 174 NSWINISELQLRVTQIESNPQLVQIV--PPNEVIVLISFEISMGEMRGIMNLCIPFNT-I 230 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQ 263 + LSS S + + + VN+ + T +++ L +G Sbjct: 231 EPLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELMNLDVGD 290 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 VI K + GK +S ++G++ + I+I D++ + + L K Sbjct: 291 VILTERDVKKGLTIFVEGKPTFSADVGQIKGHKAIQIRDKLPKTRDIVDQHLQK 344 >gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134] gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134] Length = 337 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + DI+ S + KF + + + Sbjct: 63 ERFARSLRTALFNFIRRGADITVGSVRIEKFGDFARNLPMPTNLNLVHMKPLRGTALFVY 122 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + T Sbjct: 123 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLEMTLTSYGNAWRTVYPIETE 182 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V T ++ + V + +P + + ++ Sbjct: 183 YVRSEMHTKFANVATV--NEAVITTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 240 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + +V + ++T+ +V+ L+ G V+P E Sbjct: 241 EKEVDKSWLAKLSTQLRAADVEVVAEFTHVQSTVAEVLALRAGDVLPIELPEH--VFGKV 298 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 NG + C G + Y +R+ IN Sbjct: 299 NGVPVMQCGFGTINGQYALRVERMINHQD 327 >gi|188592199|ref|YP_001796797.1| flim: flagellar motor switching and energizing component [Cupriavidus taiwanensis LMG 19424] gi|170938573|emb|CAP63560.1| FliM: flagellar motor switching and energizing component [Cupriavidus taiwanensis LMG 19424] Length = 339 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 84/269 (31%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + DIS S + KF + + L Sbjct: 62 ERFARSLRTALFNFIRRGADISVGSVRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVY 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + T Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLTSYGNAWRTVHPIETE 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V T ++ + V + +P + + ++ Sbjct: 182 YIRSEMHPKFANV--ATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + V + ++T+ +V+ ++ G V+P EK Sbjct: 240 EKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEK--VFGKV 297 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ IN Sbjct: 298 DGVPVMQCGFGTMNGQYALRVERMINHQD 326 >gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans ES-2] Length = 329 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 95/271 (35%), Gaps = 7/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +IS + KF + + + N Sbjct: 59 ERFARLFRIGLFNFIRRTPEISVGPVRVLKFGEFVRNLAVPTNLNIIQPKPLRGNGLFIF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ ++ +A + + T Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGREFTQTEQRIIQKMLAVVFETYAKAWETVYPLEFE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V ++ + +F + +P T L+ L + + Sbjct: 179 FVR-SEMNPQFANI-ATPNEVVIVTTFDIELGGNGGAFHICMPYST-LEPVKDLLFNNIQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + +R+ + + + TL+ V+ +++G VIP E A Sbjct: 236 GEHLAVDKRWLQLLSRQVQCAEIELAATLGQANITLERVLKMRVGDVIPLNVDENITA-- 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 S +G I C+ G Y ++I + ++ Sbjct: 294 SIDGVPIMECKYGVFNNQYALKIVKMLTTNE 324 >gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 5/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + ++S + K+S I + + + + Sbjct: 58 ERFARLLRIGLFNFLRRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R +A + + Sbjct: 118 DPNLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFENYAKSWEPVYPVEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 +++ N NE V + + V+ IP T+ I SS Q Sbjct: 178 YIR-SEMNTQFANI-ATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTSSLQG 235 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + I ++ V I + ++ ++ +K+G +IP + A + Sbjct: 236 ETLEVDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVLAKV- 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C G+ Y +R+ + Sbjct: 295 -DGVPVMECTYGKFNGQYALRVEKLLAQS 322 >gi|53723902|ref|YP_104282.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344] gi|67641904|ref|ZP_00440669.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4] gi|121600665|ref|YP_994775.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1] gi|124385588|ref|YP_001027842.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229] gi|126451066|ref|YP_001082210.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10247] gi|167000456|ref|ZP_02266270.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20] gi|254174753|ref|ZP_04881414.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399] gi|254201359|ref|ZP_04907723.1| flagellar motor switch protein FliM [Burkholderia mallei FMH] gi|254206701|ref|ZP_04913052.1| flagellar motor switch protein FliM [Burkholderia mallei JHU] gi|254357364|ref|ZP_04973638.1| flagellar motor switch protein FliM [Burkholderia mallei 2002721280] gi|52427325|gb|AAU47918.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344] gi|121229475|gb|ABM51993.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1] gi|124293608|gb|ABN02877.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229] gi|126243936|gb|ABO07029.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10247] gi|147747253|gb|EDK54329.1| flagellar motor switch protein FliM [Burkholderia mallei FMH] gi|147752243|gb|EDK59309.1| flagellar motor switch protein FliM [Burkholderia mallei JHU] gi|148026428|gb|EDK84513.1| flagellar motor switch protein FliM [Burkholderia mallei 2002721280] gi|160695798|gb|EDP85768.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399] gi|238522917|gb|EEP86359.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4] gi|243063644|gb|EES45830.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20] Length = 332 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIATQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326 >gi|94314217|ref|YP_587426.1| flagellar motor switch protein FliM [Cupriavidus metallidurans CH34] gi|93358069|gb|ABF12157.1| flagellar motor switch protein FliM [Cupriavidus metallidurans CH34] Length = 336 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 88/269 (32%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + DIS + + K+ + + + + Sbjct: 62 ERFARALRTALFNFIRRGADISVGTVRIEKYGDFVRNLPVPTNLNLVHMKPLRGTALFVY 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + + Q T + Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIRRMLDLTLSSYGQAWRTVHPIEFD 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 N+ V T ++ + V + IP + + ++ Sbjct: 182 YVRSEMHTKFANVAG--PNDAVVTTAFHIELGAVGGQLHICIPFSMIEPLRDLLMNPLQD 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + V + ++T+ +V+ ++ G V+P E + Sbjct: 240 EVEVDKRWLGQLSNQLRAAEVELVAEFTHLRSTVAEVLAMREGDVLPIELPEHIFGKV-- 297 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 NG + C G + Y +R+ +N+ Sbjct: 298 NGVPVMQCGFGTMNGQYALRVERMLNYQD 326 >gi|167834865|ref|ZP_02461748.1| flagellar motor switch protein FliM [Burkholderia thailandensis MSMB43] Length = 332 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLAFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLDIAESISAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45] Length = 315 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 94/268 (35%), Gaps = 7/268 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L +P K + +I TS + + + S + + + A+ W S Sbjct: 36 RLLLALVPD-LKSYCTIAPEIELTSLEYMPYEDAMESIQSPSLIAIANAEGWGSQIACVV 94 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ ++LE +LG T + R L+ +E+KL +R L QC+ + Sbjct: 95 EPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLGRRLAELSLKGLAQCLQDVSPVQFD 154 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + + M+M E+ + L++P TL + L Sbjct: 155 IQSLES--NPRSVMLAAPRTATVLVRMHMQFEDRSGHMALVLPYGTLDEVSAQLAQPFLG 212 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +S S D + V I + L +V+ K GQVI T + Sbjct: 213 GRSPTDSNARKD-MNNQISSTTVTITGVLQEVTIPLHEVLEWKTGQVIDLGMTVDTPVVG 271 Query: 278 SANGKEIYSCELGR-VGKNYTIRITDRI 304 N + ++ G+ +R+ + Sbjct: 272 MVNAQPMFQAAFGQRSNGALALRVIQSL 299 >gi|163856451|ref|YP_001630749.1| flagellar motor switch protein FliM [Bordetella petrii DSM 12804] gi|163260179|emb|CAP42481.1| flagellar motor switch protein FliM [Bordetella petrii] Length = 335 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 92/273 (33%), Gaps = 6/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + M + DI+ S + K++ + + + Sbjct: 60 ERFARQLRHLLLNFMRRNADITVGSIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPSLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWEAVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L + Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + +R+ +V++ +++++++ LK+G V+P E I Sbjct: 238 TTLEEVDQRWTHQLSRQVRSADVDLTAEFASIPSSIRELLRLKVGDVLPIEVPE--TVIA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG + C G Y +R+ + ++ + Sbjct: 296 NVNGVPLMECSYGVFNGQYALRVQNLFTYESDT 328 >gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis KC583] Length = 323 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 106/265 (40%), Gaps = 5/265 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L+ I S + K I + + + S W ++ + LV + E G Sbjct: 61 TPLEFTIDVVSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFG 120 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 A+ I R S E +++ ++ ++ T +S T Sbjct: 121 ATEPKIINRNGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQEFNTET 180 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + +++ + +++P+ + +++ ++ + D Sbjct: 181 FHQSQMF--SCTLSIKCGEAEAHLNILMPRSCH-RPIHEAITRALRAPEKRMDPLWTKRL 237 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ Q +V I+ + TL +++ LK+GQV+P L + K +Y C LG+ Sbjct: 238 RKEVSQAHVQIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGK 297 Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316 +GKN++IR+TD I+ +++ + +H Sbjct: 298 IGKNFSIRVTDPIDEEKEMINELVH 322 >gi|53717666|ref|YP_106652.1| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243] gi|76811753|ref|YP_331656.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b] gi|126441392|ref|YP_001057084.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668] gi|126453439|ref|YP_001064314.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106a] gi|134281495|ref|ZP_01768203.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305] gi|167717395|ref|ZP_02400631.1| flagellar motor switch protein FliM [Burkholderia pseudomallei DM98] gi|167736438|ref|ZP_02409212.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 14] gi|167813512|ref|ZP_02445192.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 91] gi|167822054|ref|ZP_02453525.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 9] gi|167843667|ref|ZP_02469175.1| flagellar motor switch protein FliM [Burkholderia pseudomallei B7210] gi|167892138|ref|ZP_02479540.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 7894] gi|167900650|ref|ZP_02487855.1| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC 13177] gi|167908870|ref|ZP_02495961.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 112] gi|167916909|ref|ZP_02504000.1| flagellar motor switch protein FliM [Burkholderia pseudomallei BCC215] gi|217424100|ref|ZP_03455600.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576] gi|226193119|ref|ZP_03788729.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakistan 9] gi|237814422|ref|YP_002898873.1| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR346] gi|242315986|ref|ZP_04815002.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106b] gi|254184092|ref|ZP_04890683.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1655] gi|254186558|ref|ZP_04893075.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pasteur 52237] gi|254194648|ref|ZP_04901079.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13] gi|254258129|ref|ZP_04949183.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710a] gi|254298640|ref|ZP_04966091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 406e] gi|52208080|emb|CAH34010.1| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243] gi|76581206|gb|ABA50681.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b] gi|126220885|gb|ABN84391.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668] gi|126227081|gb|ABN90621.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106a] gi|134247162|gb|EBA47248.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305] gi|157808681|gb|EDO85851.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 406e] gi|157934243|gb|EDO89913.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pasteur 52237] gi|169651398|gb|EDS84091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13] gi|184214624|gb|EDU11667.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1655] gi|217393163|gb|EEC33185.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576] gi|225934719|gb|EEH30696.1| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakistan 9] gi|237504112|gb|ACQ96430.1| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR346] gi|242139225|gb|EES25627.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1106b] gi|254216818|gb|EET06202.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710a] Length = 332 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326 >gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM 2075] Length = 328 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 89/272 (32%), Gaps = 5/272 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + VD++ TS KF + S + + Sbjct: 60 RFARLFRTTLSSALRKIVDMTTTSVDMVKFGEFMRSLPVPTSLHIFKMDPLRGHAIFVLE 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+E G + ++ R + +E++L ++ + + E + Sbjct: 120 SKLVFNLVETFFGGAGGGNVKIEGRDFTAIEQQLTRKVVMLALKDMESAWKPVHEVTMVY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 + V + + +E+ A + + IP T ++ L + +S Sbjct: 180 SRTEINPQFASIV--PPTDVVIVVKFELEMEHTAGTVTVCIPYST-IEPIRTKLYAGFQS 236 Query: 221 E--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + F ++ + V + + T D++ LK+G V+ + Sbjct: 237 DQLEVDHEWMRRFRKQLREAEVEFTVELGRTELTSGDLLQLKVGDVLQLDSDINGHLVAM 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G + G++ N R+ ++ + Sbjct: 297 VEGVPKFLGRPGQMRGNKAFRVEGFKDYGAEI 328 >gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 244 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 84/245 (34%), Gaps = 18/245 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + D++ Q KF +HS + A + Sbjct: 9 ERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFIL 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L++N G ++ R + E ++ + + Q L + E Sbjct: 69 DAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEV--- 124 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + +Y+ N +E V ++ ++ + +P +++ Sbjct: 125 -----NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYS-MIEPIREM 178 Query: 214 LSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S ++Q E ++ +NV + T I ++ L+D++ ++ G VIP + Sbjct: 179 LDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELSD 238 Query: 272 KTCAI 276 Sbjct: 239 SLVMR 243 >gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91] Length = 330 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 94/292 (32%), Gaps = 13/292 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ I + L + VDIS S ++ K+S Sbjct: 41 PYDMATQERIVRGRMPALEIINA------RFANSLQIGLYNFLRRGVDISAGSIKTIKYS 94 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 S + S+ I NL+ +++N+ G ++ R + E Sbjct: 95 EFTRSLVVPANINMVSMKPLRGTALITIDPNLIFLIVDNMFGGDGRFHTRVEGREFTLTE 154 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 + + +R + + + + +++ N ++ V + + + Sbjct: 155 QGIIRRLLDVLFENYEKAWKSVYPVRFEYIR-AEMNPQFANIATPTD-VVVASSFELNLG 212 Query: 192 NVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 F + P T+L+ L S Q + I R+ + I + Sbjct: 213 GNRGEFYICTPY-TMLEPIRDLLNNSMQEDHAEVDNNWIKSLTRQVQGAEIEIIANLGHT 271 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + TL ++ ++ G VI + ANG I C G + +Y +++ Sbjct: 272 RVTLHQILNMQEGDVIALDIP--DTVVAMANGVPIMDCHYGILNDHYALKVK 321 >gi|237653569|ref|YP_002889883.1| flagellar motor switch protein FliM [Thauera sp. MZ1T] gi|237624816|gb|ACR01506.1| flagellar motor switch protein FliM [Thauera sp. MZ1T] Length = 336 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 99/272 (36%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M + ++S + K++ + + + + + Sbjct: 59 ERFARYLRIGLFNYMHRNAEVSAGPIKVQKYAEFVRNLVVPTNLNLITAKPLRGTGLVVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ + + + A + + P Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIRGMLDVVFAEYVRAWAPVFNLQPE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N +E V + ++++ + + P +L+ L S + Sbjct: 179 FIR-SEMNSQFANI-ATPSEVVVSTSLSVEFGGSQAEMHICFPYS-MLEPIRDLLYSSMQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ I R+ V + + +L+D+V +++G VIP + A + Sbjct: 236 SDHLTSDRRWIKLLTRQLQTAEVELACSFGTARVSLRDIVDMRVGDVIPLAVQPVLQAEV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G ++ C G Y +R+ I + Sbjct: 296 --DGVPVFECRQGTRNGRYALRVERFITAEDN 325 >gi|254251031|ref|ZP_04944349.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124893640|gb|EAY67520.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 332 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEIPVTFEKILNLRAGDVLPLEIPDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAGDTM 326 >gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16] gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16] Length = 339 Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + DI+ S + KF + + L Sbjct: 62 ERFARSMRTALFNFIRRGADITVGSIRIEKFGDFARNLPMPTNLNLVHLKPLRGTALFVY 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++NL G ++ R + E+++ +R + A T Sbjct: 122 DPNLVFLVVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRMLELTLASYGNAWRTVHPIETE 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 NE V T ++ + V + +P + + ++ Sbjct: 182 YIRSEMHPKFANV--ATHNEAVVTTAFHIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQD 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + V + ++T+ +V+ ++ G V+P EK Sbjct: 240 EKEVDKGWVTQLSTQLRAAEVELVAEFAHLQSTVAEVLAMRAGDVLPIELPEK--VFGKV 297 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ IN Sbjct: 298 DGVPVMQCGFGTMNGQYALRVERMINHQD 326 >gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II '5-way CG'] Length = 338 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 17/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + V+ S + KF + + L S N + Sbjct: 60 ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +V L++++ G S ++ R S +E ++++ + + + Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPV------ 173 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 I Y++ N E V T+ + I+ + + IP T ++ Sbjct: 174 --HPMPITYIRSEINPQFAAIVAPTEMVVTMAYRLEIDGQGRTIYICIPYST-IEPIKEK 230 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ I+ + + + I+ I + TL+D++ K G V Sbjct: 231 LYTGFQSDQYEVDSRWINRLQERVEEAPLEIEAFIGEARFTLRDILGWKTGDVFSLDRYV 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G + G + IRI R+ Sbjct: 291 SEPVEVRVEGIVRFLARPGIFRHHRAIRIERRVPPP 326 >gi|42766718|gb|AAS45442.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei] Length = 332 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + S Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKSLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRTGDVLPLDITDSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISASDTM 326 >gi|300311368|ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae SmR1] gi|300074153|gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 11/288 (3%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R+ G T+E I+ L++ L +IS + K+S I + Sbjct: 44 ERIVR--GRMPTLEIINERFARLFRIGLFNFIH----RTAEISVGPVKVSKYSEFIRNLV 97 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + + + + V L++N+ G ++ R + E+++ R Sbjct: 98 VPTNLNLVHIKPFRGIGLVVFDPQFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRV 157 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + +++ N NE V + + + V+ Sbjct: 158 LEITFETYAKSWEPIYPIEFEFIR-SEMNTQFANI-ATPNEVVVSTTFTVELGPVSGEIH 215 Query: 199 LIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 + P + ++ S Q ++ + I ++ V + + D++ Sbjct: 216 ICTPYSMIEPVRDRLTSSMQGEALEVDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLL 275 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +++G VIP T +G + C G+ Y +R+ ++ Sbjct: 276 HMQVGDVIPLQT--NTTVEAQVDGVPVMECSYGQSNGQYALRVEKLLS 321 >gi|187478203|ref|YP_786227.1| flagellar motor switch protein [Bordetella avium 197N] gi|115422789|emb|CAJ49317.1| flagellar motor switch protein [Bordetella avium 197N] Length = 334 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 91/271 (33%), Gaps = 6/271 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M DI+ S + K++ + + + Sbjct: 60 ERFARNMRHVLLNFMRRSADITVGSIKIIKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++++L G ++ R +T E+++ +R + + + Sbjct: 120 DPSLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFD 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + E + +R+ ++++ ++++ ++ LK+G V+P E A + Sbjct: 238 SALEEVDQRWSQQLSRQVRSADIDLVAEFARIPSSIRGLMNLKVGDVLPVDVPESITAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G Y +R+ + +N D Sbjct: 298 --DGVPLMECSYGVFNGKYALRVQNMLNQDD 326 >gi|172059107|ref|YP_001806759.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6] gi|171991624|gb|ACB62543.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6] Length = 332 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|115350088|ref|YP_771927.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD] gi|115280076|gb|ABI85593.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD] Length = 332 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|161523223|ref|YP_001578235.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|189348920|ref|YP_001944548.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|221201776|ref|ZP_03574813.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2M] gi|221207719|ref|ZP_03580727.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2] gi|221214537|ref|ZP_03587507.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1] gi|160340652|gb|ABX13738.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC 17616] gi|189332942|dbj|BAG42012.1| flagellar motor switch protein [Burkholderia multivorans ATCC 17616] gi|221165427|gb|EED97903.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1] gi|221172565|gb|EEE05004.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2] gi|221178196|gb|EEE10606.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2M] Length = 332 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEIPTTFEKILNLRAGDVLPLDIADTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|83720285|ref|YP_440587.1| flagellar motor switch protein FliM [Burkholderia thailandensis E264] gi|167579274|ref|ZP_02372148.1| flagellar motor switch protein FliM [Burkholderia thailandensis TXDOH] gi|167617380|ref|ZP_02386011.1| flagellar motor switch protein FliM [Burkholderia thailandensis Bt4] gi|83654110|gb|ABC38173.1| flagellar motor switch protein FliM [Burkholderia thailandensis E264] Length = 332 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEVPTTFEKILNLRAGDVLPLDIADSITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum] Length = 338 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 90/276 (32%), Gaps = 17/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + V+ S + KF + + L S N + Sbjct: 60 ERFARFFQVTLSATLRKTVEFSPQGIEMVKFGDFVKKIPMPSNINILRLESLRRNILLII 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +V L++++ G S ++ R S +E ++++ + + + Sbjct: 120 DARMVYLLVDHMFGGSGRGHVKIEGRDFSPIEARISRNVMDLAIGDFEKAWAPV------ 173 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 I Y++ N E V T+ + I+ + + IP T ++ Sbjct: 174 --HPMPITYIRSEINPQFAAIVAPTEMVVTMAYRLEIDGQGRTIYICIPYST-IEPIKEK 230 Query: 214 LSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L + +S+ I+ + + + I+ I + TL+D++ K G V Sbjct: 231 LYTGFQSDQYEVDSRWINRLQERVEEAPLEIEAFIGETRFTLRDILGWKTGDVFSLDRYV 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G + G + IRI R+ Sbjct: 291 SEPVEVRVEGIVRFLARPGIFRHHRAIRIERRVPPP 326 >gi|238025700|ref|YP_002909931.1| flagellar motor switch protein FliM [Burkholderia glumae BGR1] gi|237874894|gb|ACR27227.1| Flagellar motor switch protein FliM [Burkholderia glumae BGR1] Length = 332 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E ++ R + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEMRIISRLLHLVFEHYSVAWKSVRPLQFEH 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L++G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTANLTEMPSTFEKILNLRVGDVLPIDVEESIIAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVNRMISASDTM 326 >gi|170698080|ref|ZP_02889161.1| flagellar motor switch protein FliM [Burkholderia ambifaria IOP40-10] gi|170137041|gb|EDT05288.1| flagellar motor switch protein FliM [Burkholderia ambifaria IOP40-10] Length = 332 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|171316890|ref|ZP_02906099.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5] gi|171097971|gb|EDT42789.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5] Length = 332 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYATAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELSANLAEIPSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISASDTM 326 >gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC 19624] Length = 331 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 5/272 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS Q ++S + F+ ++ N I C Sbjct: 59 ERFARNLRISLFNFIRRSPEISVGPVQVQRYSAFLRELAVPTSFNIMAVRPLRGNGMIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ +++ L G + ++ R S E+++ R + IS + Sbjct: 119 EPSLIFGVIDTLYGGIGKFQSRIEGRDFSATEQRIINRLVDVISDEYKKAWRGIYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + + I ++ + IP TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIRDVLYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S ++ R+ +V + + TT+++++ +K+G I + + A +S Sbjct: 237 DSMEVDRRWVNVLTREIQAADVTLVAELARANTTVEELLAMKVGDFIELERQPRIEATIS 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G ++ C+ G Y IRI + + S Sbjct: 297 --GVPVFECQYGTHNAKYAIRIERSLRGNDTS 326 >gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC 19718] Length = 330 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 90/263 (34%), Gaps = 7/263 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + VDIS S ++ K+S S + S+ Sbjct: 64 RFANSLQIGLYNFLRRGVDISAGSIKTIKYSEFTRSLVVPANINLVSMKPLRGTALFTID 123 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NL+ +++N+ G ++ R + E+ + +R + + + + Sbjct: 124 PNLIFLIVDNMFGGDGRFHTRVEGREFTLTEQGIIRRLLDVLFEHYEKAWQSVYPVKFEY 183 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQN 218 +++ N ++ V + + F IP T+L+ L S Q Sbjct: 184 IR-AEMNPQFANIVTPTD-IVVASAFELNLGGNRGEFYTCIPY-TMLEPIRDLLNNSMQE 240 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ I R+ + I + + TL ++ ++ G VI + AI Sbjct: 241 DRAEVDKNWIKSLTRQVQGAEIEIIANLGQTQVTLHQILNMQEGDVIALDIPDTVVAI-- 298 Query: 279 ANGKEIYSCELGRVGKNYTIRIT 301 AN I C G + +Y +++ Sbjct: 299 ANNVPIMDCHYGILNGHYALKVK 321 >gi|167585018|ref|ZP_02377406.1| flagellar motor switch protein FliM [Burkholderia ubonensis Bu] Length = 332 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 84/271 (30%), Gaps = 5/271 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKMLNLVFEHYTTAWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNK 219 NE V ++ + + +P + + S Q + Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYSMVEPIRDVLASPIQGE 237 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + +++ V + + T + ++ L+ G V+P + A + Sbjct: 238 ALEVDRRWVRVLSQQVQTAEVEVTANLAEIPVTFEQILNLRAGDVLPLAIEDTITAKV-- 295 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ + Sbjct: 296 DGVPVMECGYGIFNGQYALRVQKMISANDTM 326 >gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E ++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEMRIISKLLHMVFEHYTVAWKSVRPLQFEH 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L++G V+P Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAEVPTTFERILNLRVGDVLPLDIG--DAVTAK 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I + Sbjct: 295 VDGVPVMECGYGIFNGQYALRVNRMIGASDTT 326 >gi|107021592|ref|YP_619919.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU 1054] gi|116688064|ref|YP_833687.1| flagellar motor switch protein FliM [Burkholderia cenocepacia HI2424] gi|170731414|ref|YP_001763361.1| flagellar motor switch protein FliM [Burkholderia cenocepacia MC0-3] gi|206561843|ref|YP_002232608.1| flagellar motor switch protein FliM [Burkholderia cenocepacia J2315] gi|254246641|ref|ZP_04939962.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184] gi|105891781|gb|ABF74946.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU 1054] gi|116646153|gb|ABK06794.1| flagellar motor switch protein FliM [Burkholderia cenocepacia HI2424] gi|124871417|gb|EAY63133.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184] gi|169814656|gb|ACA89239.1| flagellar motor switch protein FliM [Burkholderia cenocepacia MC0-3] gi|198037885|emb|CAR53829.1| flagellar motor switch protein FliM [Burkholderia cenocepacia J2315] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + +T + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTANLAEISSTFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMIGASDSM 326 >gi|239817144|ref|YP_002946054.1| flagellar motor switch protein FliM [Variovorax paradoxus S110] gi|239803721|gb|ACS20788.1| flagellar motor switch protein FliM [Variovorax paradoxus S110] Length = 333 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M DIS ++ + + + Sbjct: 61 ERFARHLRSSLLNFMRRSPDISVGPVHIQQYGEFVRHLPVPANINMLHMKPLRGTALFVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++NL G+ ++ R + E+++ KR + S + Sbjct: 121 DPKLVFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLNLTLQCYADAWQPVFPLSFD 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L NE V + + V + IP + + + Sbjct: 181 YVRAEMHGKLANIV--APNEVVINTTLQIEFGPVGGFLHVCIPYSMIEPIRDLLSNPVQD 238 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + +++ +V + +T+ +V+ L++G V+P T Sbjct: 239 EIEVDKRWVRQMSQQMQSADVELSAEFITLPSTIGEVLKLQVGDVLPIELP--TSITARV 296 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +G + C G + Y +R+ I+ Sbjct: 297 DGIPVMECGYGVSNERYALRVLQMISHQD 325 >gi|33592495|ref|NP_880139.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I] gi|33601558|ref|NP_889118.1| flagellar motor switch protein FliM [Bordetella bronchiseptica RB50] gi|33572141|emb|CAE41684.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I] gi|33575994|emb|CAE33074.1| flagellar motor switch protein FliM [Bordetella bronchiseptica RB50] gi|332381913|gb|AEE66760.1| flagellar motor switch protein FliM [Bordetella pertussis CS] Length = 336 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 6/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M + DI+ + + K++ + + + Sbjct: 60 ERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V ++ + +P + L Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + R+ ++++ +++ +++ +K G V+P E Sbjct: 238 TALEEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPE--TVTA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G + C G Y +R+ + IN+D Sbjct: 296 HVDGVPLMECGYGVFNGRYALRVQNLINYDDT 327 >gi|295678044|ref|YP_003606568.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002] gi|295437887|gb|ADG17057.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIITKLLNLTFEHYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGSTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EAMDVDRRWVRVLSQQVQAAEVQLTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|134294173|ref|YP_001117908.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4] gi|134137330|gb|ABO53073.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4] Length = 332 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MVEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ L+ G V+P Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTADLAEIPATFEKILNLRAGDVLPLEI--DDTITAK 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 295 VDGVPVMECGYGIFNGQYALRVQKMISAGDTM 326 >gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72] Length = 336 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 97/272 (35%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L M + ++S + K++ + + + + Sbjct: 59 ERFARYLRIGLFNYMHRNAEVSVGPIKVQKYAEFVRNLVVPTNLNLVLGKPLRGTGLVVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV +++N+ G ++ R + E+++ + + + + + Sbjct: 119 DPNLVFLVVDNMFGGDGRFHTRVEGRDFTPTEQRIIQGMLNVVFTEYAKAWAPV--FKLE 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 LE + +E V + + ++ + + + P +++ L S + Sbjct: 177 LEYVRSEMNSQFANIATPSEIVVSTSFSLELGGAQAEMHICFPYS-MVEPIRDLLYSTMQ 235 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ Q I +R+ V + + + TL+D+V +++G VIP E A + Sbjct: 236 SDHLTQDRRWITLLSRQLQTAEVELTCNLGTARVTLRDIVNMRVGDVIPLQVSELLQATV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G + C G + ++ + D+ Sbjct: 296 --DGVPVLECRYGTQNGQFAFKVDRFLGPDET 325 >gi|167560937|ref|ZP_02353853.1| flagellar motor switch protein FliM [Burkholderia oklahomensis EO147] gi|167568197|ref|ZP_02361071.1| flagellar motor switch protein FliM [Burkholderia oklahomensis C6786] Length = 332 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 88/272 (32%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYSVAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFA--NVATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + TT + ++ L+ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELVADLAEIPTTFEKILNLRAGDVLPLDIAETLTAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ ++ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMVSASDTM 326 >gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301] gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301] Length = 334 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 93/270 (34%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + V++S + K+S + + + + + Sbjct: 58 ERFARLVRIELFNFLRRTVEVSVGPVRITKYSDFVRNLVVPTNLNLIQMKPLRGTALMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++N+ G ++ R + E+++ +R + + ++ Sbjct: 118 DPTLVFLVVDNMFGGDGRFHTRVEGRDFTQTEQRIIQRILNIVFETYSKSWEPVYPVQFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V + N+ + + P +L+ LSS + Sbjct: 178 YMR-SEMNTQFANI-ATPNEVVIAVTFNVELGPASGEIHFCFPYS-MLEPLRDMLSSPLQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++ V I + + DV+ +K+G V+P E A + Sbjct: 235 GEVLGTDKRWVKLMTQQVQAAEVEIVADLAKTNMMIGDVLNMKVGDVVPLNIEESIEAQV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C+ G Y +R+ + + Sbjct: 295 --DGVPVMLCKYGMFNGQYALRVEKLLRSN 322 >gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 333 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 5/247 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +++ + + K+S + F+ ++ + I C LV +++ L G + + Sbjct: 78 EVAVGTIKVQKYSAFLREIVVPTNFNIMAVRPLRGSGLIVCDPTLVFAVIDALFGGAGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E ++ R + ISA + + + + Sbjct: 138 HTRIEGRDFSPTELRVISRLVEVISAEYKKAWAGVYPVELEYQRSEMQPQFATI--AAPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V T + + I + + + IP TL S+ Q + + ++ Sbjct: 196 EIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQGDANEPDRRWVKLLTQQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + T++ ++ LK G I +G ++ C G Y Sbjct: 256 AEVDLVAELAQAPATVEQLLALKPGDFIELDL--DQVVHAKVDGVPVFDCHYGTSNGKYA 313 Query: 298 IRITDRI 304 I+I + Sbjct: 314 IKIDQLL 320 >gi|296135698|ref|YP_003642940.1| flagellar motor switch protein FliM [Thiomonas intermedia K12] gi|294339869|emb|CAZ88232.1| Flagellar motor switch [Thiomonas sp. 3As] gi|295795820|gb|ADG30610.1| flagellar motor switch protein FliM [Thiomonas intermedia K12] Length = 336 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 104/298 (34%), Gaps = 13/298 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P R+ G T+E I+ L++ L + +IS +S + K++ Sbjct: 37 PYDLASQDRIVR--GRMPTLEVINERFARLWRVSLFNFLRRAS----EISVSSVKLTKYN 90 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 I + + L+ ++++N G ++ R + +E Sbjct: 91 EFIRGLVVPSNLNLVQMKPLRGTALFIFDPRLIFSVIDNFFGGDGRFHARIEGRDFTPLE 150 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ KR + + + P L + E V ++ IE Sbjct: 151 QRIIKRMLDMVFKEYKTAWAPVLPLEPELTRSEV--NPQFVNIATPTEVVIVSTFDVEIE 208 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLK 249 S + IP +++ L++ ++ D + + + V + + + Sbjct: 209 GGGGSLHVCIPYS-MVEPIRDQLTTGMTTDRSEVDHRWVKALQTEMREAEVEMRVELLQR 267 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + +++++ L++G V+P E I +G + E GR ++I ++ + Sbjct: 268 QILVRELLNLRVGDVLPVDMPE--TVIARVDGIPVLLGEYGRHEDKMALKIRQQLFPE 323 >gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi str. 1704B] Length = 222 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 20/234 (8%) Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 + A + LV L++N G ++ R + E ++ + + Q Sbjct: 1 SLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQ 59 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVAS 195 L + E + +Y+ N +E V ++ ++ Sbjct: 60 AFVDLKEAWQAIMEV--------NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGG 111 Query: 196 SFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + +P +++ L + +S ++Q E ++ +NV + T I ++ L Sbjct: 112 DLHVTMPYS-MIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPL 170 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +D++ ++ G VIP + ++ ANG + +LG +++ + I Sbjct: 171 RDILHMRPGDVIPVELSDS--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 222 >gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] Length = 337 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 105/293 (35%), Gaps = 11/293 (3%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKE 79 L ++ I + + + L ++++ + +IS + K+S I S Sbjct: 40 DLANQDRIVRGRMPTLEVVNERLARLWRVSLFNFLRRSAEISVGPVRLVKYSEFIRSLMV 99 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 + + + L+ +++N G ++ R + +E+++ KR + Sbjct: 100 PSNINIVQVKPLRGSALFVFDARLIFAVVDNYFGGDGRFHARIEGREFTPLEQRIIKRLL 159 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + S + P L + + E V N+ +E+ SF + Sbjct: 160 DLVFKDFKSAWSPVIDLQPELSRSEV--NPQFVSIATPTEVVIVSTFNIELESGTGSFQI 217 Query: 200 IIPQETLLKTTLISLSSQNKSENQ--SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +++ L++ ++ + + + + + + +++ ++ Sbjct: 218 CLPYG-MVEPVRDQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFARLPISVRQLL 276 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L++G VIP E + +G ++ G G Y I+ + + + +S Sbjct: 277 ALRVGDVIPLERPE--TLVARVDGIPVFRGPYGVHGGKYAIQFHEALPPETES 327 >gi|293607830|ref|ZP_06690150.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC 43553] gi|292813773|gb|EFF72934.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M DI+ S + K++ + + + Sbjct: 60 ERFARHMRNVLLNFMRRSADITVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L + Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + +R+ ++++ +++++++ LK+G V+P E I Sbjct: 238 TTLEEVDQRWSQQLSRQVRSADIDVVAEFARIPSSIRELMHLKVGDVLPVDVPE--TIIA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + +G + C G Y +R+ + +D S Sbjct: 296 NVDGVPLMECGYGVFNGQYALRVQNMFTYDTDS 328 >gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus JA2] Length = 334 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 88/251 (35%), Gaps = 5/251 (1%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + KFS + F+ S+ + I C N+V +++ L G + + Sbjct: 78 EVSIGGIKVQKFSAFLREIVVPTNFNLVSVKPLRGSGLIVCDPNVVFAVIDALFGGAGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E ++ R + I A + + ++ N + Sbjct: 138 HTRIEGRDFSPTELRVILRLVECIIAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I + + + IP TL + S+ Q S ++ + Sbjct: 196 EIVVSTAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQGDSAEPDRRWVNLLKHQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V++ + T++ +++ K G I A + +G ++ C G Y Sbjct: 256 AEVDLVAELGHAPATVEQLLSFKPGDFIELDLDPMIQAKV--DGVPVFDCHYGTTNGRYA 313 Query: 298 IRITDRINFDQ 308 I+I + Sbjct: 314 IKIDRLLTSSN 324 >gi|254292908|ref|YP_003058931.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814] gi|254041439|gb|ACT58234.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814] Length = 376 Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 101/267 (37%), Gaps = 6/267 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + +V++S S S +F ++S + S + + Sbjct: 100 RLVRLLTTSLRNFTSDNVEVSLDSIASMRFGDYLNSIPLPAILSVFRARQLDNYGLVTVD 159 Query: 101 NNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NL+ ++++ LLG T ++ R +T+E+ L R + I A + + E + Sbjct: 160 SNLIYSIVDVLLGGRRGTAAMRVEGRPYTTIERMLVTRLVEVILADAKKAFNPLTEVDFD 219 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 L+ + + + + +E+ L++P TL ++ L+ Sbjct: 220 LDRIETNPRFAAIAQPANAA--ILVRLRVDMEDRGGRCELMLPYATLEPIRKMLLQNFMG 277 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K N A + + N+ ++ + L +++L++G + + + L Sbjct: 278 EKFGN-DNIWEGHLATEIWTAPTNVRVVMDEFEQPLGRMMSLEVGDTLLMTAGQNSKVSL 336 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 + ++GR+GK +R+ + Sbjct: 337 RCGDIYLTEGQIGRIGKKVAVRVDAPL 363 >gi|187925747|ref|YP_001897389.1| flagellar motor switch protein FliM [Burkholderia phytofirmans PsJN] gi|187716941|gb|ACD18165.1| flagellar motor switch protein FliM [Burkholderia phytofirmans PsJN] Length = 332 Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPVTFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ + Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAAETM 326 >gi|253996306|ref|YP_003048370.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8] gi|253982985|gb|ACT47843.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8] Length = 334 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 90/270 (33%), Gaps = 7/270 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + V++S + K+S I + + + + Sbjct: 58 ERFARLVRIELFNFLRRTVEVSVGPVRITKYSDFIRNLVVPTNLNLVQMKPLRGTALMVF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++N+ G ++ R + E+++ +R +A + + Sbjct: 118 DPTLVFLVVDNMFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFETYAKSWEPVYPIEFE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ N NE V N+ + + +P +++ L+S + Sbjct: 178 YLR-SEMNTQFANI-ATPNEVVVVTTFNVELGPASGEIHFCMPYS-MVEPIRDLLTSPLQ 234 Query: 220 SE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++ + I + + L V+ +K+G VIP Sbjct: 235 GEVLGADKRWVKLMTQQVQAAEIEIVADLATTEMHLGKVLNMKVGDVIPISM--DDAIEA 292 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G + C+ G Y +R+ + + Sbjct: 293 KVDGVPVMLCKYGLFNGQYALRVEKLLRSN 322 >gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8] Length = 335 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M DI+ S + K++ + + + Sbjct: 60 ERFARQMRHVLLNFMRRSADITVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V + ++ + +P + L + Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQE 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + +R+ ++++ +++++++ LK+G V+P E + Sbjct: 238 TTLEEVDQRWAQQLSRQVRSADIDVVAEFARIPSSIRELMRLKVGDVLPVTVPE--TIVA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 S +G + C G Y +R+ + D +S Sbjct: 296 SVDGVPLMECGYGVFNGQYALRVQNMFTHDTES 328 >gi|308273526|emb|CBX30128.1| hypothetical protein N47_D29370 [uncultured Desulfobacterium sp.] Length = 322 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 5/267 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + FL + + L D+S S KF S + + + Sbjct: 59 ERFINFLNESLPGTIGLSTDVSVDEIDSIKFGDFCRSLPVPTSLNIFKMEPLKGFALLVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++ + G + +L R + +E+K+ R + + L + + ++ Sbjct: 119 EGWLVFAFVDAMFGGKGVSHVKLEGRGFTAIEQKIVSRIVDIVLVDLQKAWAEIKDLKMV 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++D + ++ + T + I N + +P + +++ L + Sbjct: 179 YTR-SEMDPQFAGIAKPTDMIIAT-KFALNIGNFTGGMTICLPYD-VIEPIGEKLKENYR 235 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 SE D +K +L++N+ + K T ++ + +K+ V+ + ++ Sbjct: 236 SEKFEADPVWKQHIKKKIQELDINLKCTLGRIKITGREFLEMKVDDVLLTGQKVDDPIVV 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 S + +G + IRI D+I Sbjct: 296 SVGDLNKFKGHVGSMNNKKAIRIADKI 322 >gi|91785619|ref|YP_560825.1| flagellar motor switch protein FliM [Burkholderia xenovorans LB400] gi|296157439|ref|ZP_06840274.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1] gi|91689573|gb|ABE32773.1| Flagellar motor switch protein FliM [Burkholderia xenovorans LB400] gi|295892211|gb|EFG71994.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1] Length = 332 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAKVPVTFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|317406219|gb|EFV86466.1| flagellar motor switch protein [Achromobacter xylosoxidans C54] Length = 335 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 41/315 (13%), Positives = 105/315 (33%), Gaps = 10/315 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSL---GYLYKKFLPKIFKEKMDLD 57 + G+S K S P AR + + + +L + + + + M Sbjct: 19 VTGESDSKKESAG-PNDGARAYDLSSPDRVVRRRMQTLELINERFARQMRSVLLNFMRRS 77 Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 DI+ S + K++ + + + NLV ++++L G Sbjct: 78 ADITVGSIKIQKYADFERNLPVPSNLNMVQMKPLRGTALFTYDPNLVFLVIDSLFGGDGR 137 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 ++ R +T E+++ +R + + + T + Sbjct: 138 YHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHTKFASITG--N 195 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQNKSENQSEDLIDPFARKT 235 NE V + ++ + +P + L + E + +R+ Sbjct: 196 NEVVVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQV 255 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++++ +++++++ +K+G ++P + I +G + C G Sbjct: 256 RSADIDVVAEFARIPSSIRELMRMKVGDILPVDVPQ--TVIAHVDGVPLMECGYGVFNGQ 313 Query: 296 YTIRITDRINFDQKS 310 Y +R+ + D +S Sbjct: 314 YALRVQNMFTHDTES 328 >gi|307731349|ref|YP_003908573.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003] gi|307585884|gb|ADN59282.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003] Length = 332 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGREFTQTEQRIISKLLNLVFEHYAASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 MRSEMHTQFA--NVATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E+ A + Sbjct: 237 EALEVDRRWVRVLSQQVQSAEVELTADLAQVPITFEQILNMRKGDVLPINIPEQITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQRMISAADTM 326 >gi|170694407|ref|ZP_02885561.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M] gi|170140830|gb|EDT09004.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M] Length = 332 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 MRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPITFEQILNMRKGDVLPINIPEHITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN] Length = 334 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 5/245 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ + + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G I+ C+ G Y Sbjct: 256 AEVTLVAELAQADATVEQLLAMKPGDFIELDREPRIRA--SIGGVPIFECQYGTHNSKYA 313 Query: 298 IRITD 302 IRI + Sbjct: 314 IRIEE 318 >gi|300680950|sp|P0CG26|FLIM_CAUCR RecName: Full=Flagellar motor switch protein FliM gi|144253|gb|AAA62449.1| FliM [Caulobacter crescentus CB15] Length = 373 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 43/323 (13%), Positives = 114/323 (35%), Gaps = 20/323 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLP--------------KIFKEKM 54 N + +L L+G D +T + + + + LP + Sbjct: 53 NQDEIDSLLGFDLSGDGSDDRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFT 112 Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 +V++S + S +F ++S + + + + +NL+ ++++ LLG Sbjct: 113 SDNVEVSLDNISSIRFGDYLNSIPLPGILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGG 172 Query: 115 SHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T ++ R +T+E+ L +R I + L S +L+ Sbjct: 173 RRGTAAMRIEGRPYTTIERVLVQRMIDVVLHDLKSAFEPLHPVSFSLDRLET--NPPFAA 230 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 + + + +E+ L++P TL ++ L+ K + Sbjct: 231 IARPANAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFG-RDNIWEGHL 289 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 A + + + + ++ ++ L V+ +++G + + + + +GR Sbjct: 290 ATELWTTQMEVRAVLDEQQVPLSRVLNMQVGDTLMLNATSRQPGGAARRRIPLTRGRMGR 349 Query: 292 VGKNYTIRITDRINFDQKSLKNF 314 + +R ++ +K+++ Sbjct: 350 RNHSIAVRAEAPVDRRKKAVQKL 372 >gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6] Length = 334 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 5/247 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + K+S + F+ S+ + I C LV ++++ L G S + Sbjct: 78 EVSVGGIKVQKYSAFLRETVVPTNFNIVSVRPLRGSGMIVCDPTLVFSVIDALFGGSGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I+ + + ++ N Sbjct: 138 HTRIEGRDFSPTEQRVISRIVEVIATEYKKAWQGIYPLELEYQR-SEMQPQFANI-AAPG 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V T + + I + + IP TL + SS Q S + + Sbjct: 196 EIVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQGDSAEPDRRWVKLMTHQIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ LK G I + + +G + + G Y Sbjct: 256 AQVQLVAELAHAPATVEQLLALKAGDFIELDLIKSIEVKV--DGVPVMEAQYGTSNGKYA 313 Query: 298 IRITDRI 304 +++ + Sbjct: 314 LKVDRML 320 >gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp. avenae ATCC 19860] Length = 334 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 5/251 (1%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ + + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNSKYA 313 Query: 298 IRITDRINFDQ 308 IRI + + Sbjct: 314 IRIEECLRNPD 324 >gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1] Length = 334 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 91/251 (36%), Gaps = 5/251 (1%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + I C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSPTEQRVINRLVDVICAEYKKAWHGIYPLELEYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ + + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELDREPRIQA--SIGGVPIFECQYGTHNSKYA 313 Query: 298 IRITDRINFDQ 308 IRI + + Sbjct: 314 IRIEECLRNPD 324 >gi|209522293|ref|ZP_03270920.1| flagellar motor switch protein FliM [Burkholderia sp. H160] gi|209497269|gb|EDZ97497.1| flagellar motor switch protein FliM [Burkholderia sp. H160] Length = 332 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYTASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGSTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + + +++ V + + T + ++ ++ G V+P E+ A + Sbjct: 237 EAMDVDRRWVRVLSQQVQAAEVQLTADLAQVPVTFEQILNMRKGDVLPINIPERITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|78064701|ref|YP_367470.1| flagellar motor switch protein FliM [Burkholderia sp. 383] gi|77965446|gb|ABB06826.1| Flagellar motor switch protein FliM [Burkholderia sp. 383] Length = 332 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 86/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGTLHICMPYS-MIEPIRDVLSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + + + ++ L+ G V+P + A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTANLAEISSNFEKILNLRAGDVLPLEIEDTITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAGDSM 326 >gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1] Length = 334 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 87/245 (35%), Gaps = 5/245 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I + + ++ N + Sbjct: 138 QTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLELGYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + SS Q S + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G I+ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPIFECQYGTHNDKYA 313 Query: 298 IRITD 302 IR+ + Sbjct: 314 IRVEN 318 >gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1] Length = 335 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 105/265 (39%), Gaps = 5/265 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L+ S + K II + + + S S W + LV + E G Sbjct: 73 TSLEFSTDVQSLDTLKSDKIIQTIGTDTLLIYFSSSLWGDDVIFVLDATLVDLITEAFFG 132 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 A+ + R S E K+++ ++ ++ T S + T Sbjct: 133 AAEPKLINRNGRPFSPTEYKISEYFGKLLANTMDGIFGTGDGSLLLFKQILKAQEFNAET 192 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + + + + ++ +++P+ + +++ ++ + D Sbjct: 193 FHQSQMF--SCTLGVKCNEIETNVNILMPRSCH-RPIQEAVTRALRAPAKHTDPLWAKRL 249 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ + +V+I+ I TL ++ L++GQV+ L + K +Y C LG+ Sbjct: 250 KQEVSRAHVSIEAFIQQGSMTLDELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGK 309 Query: 292 VGKNYTIRITDRINFDQKSLKNFLH 316 +G N++IR+TD I+ +++ + +H Sbjct: 310 MGTNFSIRVTDPIDEEKEMIDELVH 334 >gi|251789181|ref|YP_003003902.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591] gi|247537802|gb|ACT06423.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591] Length = 338 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 61 ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ +R + + + + Sbjct: 121 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVRRMLKLALDAYSDAWNAIYKLDVE 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ N N+ V T ++ I + F + IP +++ L++ Sbjct: 181 YVR-SEMQVKFTNITTSPNDIVVTTPFHLEIGTLTGEFSICIPFS-MIEPLRELLANPPL 238 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +Q ED + A++ + + L V+ LK G ++P E + Sbjct: 239 ENSQQEDQHWRETLAKQVQHSELELVANFVDIPVRLSKVLKLKPGDILPIDKPE--RLVA 296 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + +C+ G + Y +R+ IN SL + Sbjct: 297 HVDGVPVLTCQYGTLDGQYALRVEHLINPILNSLND 332 >gi|323527699|ref|YP_004229852.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001] gi|323384701|gb|ADX56792.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001] Length = 332 Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 7/272 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + K+S + + + Sbjct: 60 RFARLLRVGIFNFMRRSAEISVGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEY 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QN 218 NE V ++ + + +P +++ LSS Q Sbjct: 180 MRSEMHTQFANV--ATPNEIVIVTQFSIEFGTTGGTLHICMPYS-MIEPIRDILSSPIQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 ++ + +++ V + + T + ++ ++ G V+P E+ A + Sbjct: 237 EALEVDRRWVRVLSQQVQAAEVELTADLAQVPITFEQILNMRKGDVLPINIPEQITAKV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +G + C G Y +R+ I+ Sbjct: 296 -DGVPVMECGYGIFNGQYALRVQKMISAADTM 326 >gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. japonica str. M301072PT] Length = 216 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 20/228 (8%) Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + LV L++N G ++ R + E ++ + + Q L Sbjct: 1 IKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLK 59 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLII 201 + E + +Y+ N +E V ++ ++ + + Sbjct: 60 EAWQAIMEV--------NFEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTM 111 Query: 202 PQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P +++ L + +S ++Q E ++ +NV + T I ++ L+D++ + Sbjct: 112 PYS-MIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHM 170 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G VIP + ++ ANG + +LG +++ + I Sbjct: 171 RPGDVIPVELSDS--LVMRANGVPSFKVKLGSHKGKMALQVIEPIARR 216 >gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H] gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H] Length = 343 Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 102/277 (36%), Gaps = 12/277 (4%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L + +V+ S S +F + + +F+ W + + S Sbjct: 61 RFTRILTTSLRNFTSDNVEASMDRLGSQRFGDYLENVPGQAMFAVFKAEEWDNYGVVVLS 120 Query: 101 NNLVITLLENLLGA--SHETIPQLY-----NRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 ++L+ ++++ LLG ++ R + +E+ L + + I L S Sbjct: 121 SSLIYSIVDALLGGHVRGDSALTAPASRQTGRHHTAIERALIEPMVRIILDDLETSFSPL 180 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 + + E +++ R N V T + +E +++P T L+ Sbjct: 181 CAVNFHFERL-EMNSRFAMICRAGNG-VVTARFGIDMEGRGGDVDIVLPHAT-LEPVRDI 237 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L Q E D + AR+ +Q ++ +D + + LKD++ L G + + Sbjct: 238 LLQQFMGEKFGHDGIWENHLARELWQTDLTLDAVLEEQTMNLKDIMKLAPGDQLVLRRKP 297 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L +++ +GR ++I D +N Sbjct: 298 DASVSLRCGEHVLFTGRVGRKQGQVAVKIEDVLNQKP 334 >gi|332284035|ref|YP_004415946.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7] gi|330427988|gb|AEC19322.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7] Length = 330 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 91/275 (33%), Gaps = 8/275 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + M + DI+ S + K+S + + ++ Sbjct: 60 ERFARRLRSVLLSFMRRNADITVGSIRIQKYSDFERNLPVPSNLNMVTMKPLRGAALFTF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + Sbjct: 120 DPNLVFLVIDSLFGGHGRYSTRVEGRDFTTTEQRIIRRLLNLTLESYGGAWEQVYPVQFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 T+ NE V + N+ + + + +P +++ L+ + Sbjct: 180 YIRSEMHTKFASITS--GNEIVVVTSFNIELGASGGNLNICLPYS-MIEPVRDLLTRPLQ 236 Query: 220 SENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 N + R+ +V + ++++ +++ L++ ++P A Sbjct: 237 EANAGAIDQRWTHQLTRQVRSADVELVAEFARIESSIGELMRLEVNDILPLEITPAINAH 296 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + G + C G Y +R+ + + + Sbjct: 297 V--GGVPVMECTYGTFNGRYALRVKKVLASSETDI 329 >gi|307131596|ref|YP_003883612.1| flagellar motor switch protein fliM [Dickeya dadantii 3937] gi|306529125|gb|ADM99055.1| Flagellar motor switch protein fliM [Dickeya dadantii 3937] Length = 338 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 107/307 (34%), Gaps = 12/307 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 36 DVKPYDPNTQRRVIRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIKIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + + + ++ N N+ V T ++ Sbjct: 150 HTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHL 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I + F + IP +++ L++ +Q ED + A++ + + Sbjct: 209 EIGTLTGEFSICIPFS-MIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELVANF 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+ LK G ++P E + +G + +C+ G + Y +R+ IN Sbjct: 268 VDIPVRLSKVLKLKPGDILPIDKPE--RLVAHVDGVPVLTCQYGTLDGQYALRVEHLINP 325 Query: 307 DQKSLKN 313 SL + Sbjct: 326 ILNSLND 332 >gi|271500079|ref|YP_003333104.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586] gi|270343634|gb|ACZ76399.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586] Length = 338 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 107/307 (34%), Gaps = 12/307 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 36 DVKPYDPNTQRRVIRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIKIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + + + ++ N N+ V T ++ Sbjct: 150 HTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHL 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I + F + IP +++ L++ +Q ED + A++ + + Sbjct: 209 EIGTLTGEFSICIPFS-MIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELVANF 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+ LK G ++P E + +G + +C+ G + Y +R+ IN Sbjct: 268 VDIPVRLSKVLKLKPGDILPIDKPE--RLVAHVDGVPVLTCQYGTLDGQYALRVEHLINP 325 Query: 307 DQKSLKN 313 SL + Sbjct: 326 ILNSLND 332 >gi|110805914|ref|YP_689434.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401] gi|110615462|gb|ABF04129.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401] Length = 349 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I NG + + + G + Y +RI Sbjct: 278 ANFADISLHLSQILKLKPGDVLPIEKP--DRIIAHVNGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411] Length = 327 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 12/280 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + I+ + + L + V+I S ++ + S N F+ SL Sbjct: 57 RAIKNLHDKFSRNFSSKLSAFLRSI----VEIEVVSVDQMTYAEFVLSLSNNVSFNVVSL 112 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N ++ L++ LLG E+ NR + +E+ + + Q + Sbjct: 113 SPLDGNAVFSLEPDIGFALIDRLLGGIGES--SNINRPFTDIEQSILLDVVRQAMEEMRS 170 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + S + + + +E V + + + +P +L+ Sbjct: 171 SWEPIIDISFEVVGQESSPNVVQIV--APSEIVVLVVFEVKLGETTGIINWCLPV-IVLE 227 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L + + + +S+ +ED I+ AR ++ V ++ R+ ++D ++LK G ++ Sbjct: 228 PVLNKIGTHDILARSKKATEDRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLL 287 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + NG E Y +LGR G N ++I I Sbjct: 288 TLDKKVDDELPVFINGVEKYGVKLGRKGYNKAVKINRIIG 327 >gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118] Length = 329 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 95/270 (35%), Gaps = 5/270 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS ++S + F+ ++ + I C Sbjct: 59 ERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPTNFNIVAIRPLRGSGMIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++ L G + ++ R S E+++ R + I+ + Sbjct: 119 EPSLVFGVIDTLYGGIGKFQARIEGRDFSATEQRVINRLVDVITEEYKKAWKGVYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + + I +A S +P TL I SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVISTSFQLEIGEIAGSIHFCMPYATLEPIRDILYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S + ++ ++ + + + T++ ++ +K G I + ++ Sbjct: 237 DSIEVDKRWVNVLTQEIQAAEITLVAELARADATVEQLLAMKTGDFIELDRP--SRIEVT 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G ++ C+ G Y IRI + + Sbjct: 295 VEGVPVFECQYGTHNAKYAIRIDKSLRGND 324 >gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY] gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42] gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY] Length = 334 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 90/245 (36%), Gaps = 5/245 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++S + F+ ++ + + C +LV +++ L G + Sbjct: 78 EISVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKF 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R S E+++ R + I A + + ++ N + Sbjct: 138 QTRIEGRDFSATEQRVINRLVDVICAEYKKAWQGIYPLELAYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I ++A + + +P TL + SS Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDLAGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVRVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ +K G I + A S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMKPGDFIELEREPRIRA--SIEGVPVFECQYGTHNSKYA 313 Query: 298 IRITD 302 IRI + Sbjct: 314 IRIEE 318 >gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 96/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS ++S + F+ ++ + + C Sbjct: 59 ERFARNLRIGLFNFIRRSPEISVGMVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV +++ L G + + ++ R S E+++ R + I A + Sbjct: 119 EPSLVFGIIDTLYGGAGKFQTRIEGRDFSPTEQRVINRLVDVICAEYKKAWQGIYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + I ++ + + +P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLPGAIHMCMPYATLEPIRDVLYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S + R+ V + + T++ ++ LK G I + + A Sbjct: 237 DSIEVDRRWVRVLTREIQAAEVVLVAELARADATVEQLLALKPGDFIELERQPRIRAA-- 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKN 313 G I+ C+ G Y IRI + N D L Sbjct: 295 IGGVPIFECQYGTHNCRYAIRIEKCLRNADPSWLGE 330 >gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani DSM 16646] Length = 331 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L F ++ V I+ +S +S I S + I Sbjct: 60 ENFSRQLITFFSTQLRTLVQINASSVDQMPYSEFISSIPNPSIIGIVDFQPLRGAIIIAM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + ++ ++++ LLG S E + R + +E + R +++ ++ + E P Sbjct: 120 NVSMAFSIIDRLLGGSGEY--KDKPREPTEIEANILHRVYSKLVKLMQEAWQDILEIHPV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + NE V I +N I + IP +++ + LS++ Sbjct: 178 FDKLET--NPQFVQLVSPNEAVALITINTRIGKTDGLINICIPY-IVIEPVMSRLSTKIW 234 Query: 220 SENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 N ++ + F + + +N I I K T+++ + L +G VI + Sbjct: 235 LSNSKKESPESFIKTITRKLENVNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEV 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + K Y +G+ + +RI I+ + Sbjct: 295 DVYVYDKLKYKGIMGKRNGRFAVRINKVISERDE 328 >gi|261821166|ref|YP_003259272.1| flagellar motor switch protein FliM [Pectobacterium wasabiae WPP163] gi|261605179|gb|ACX87665.1| flagellar motor switch protein FliM [Pectobacterium wasabiae WPP163] Length = 337 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 106/311 (34%), Gaps = 12/311 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + P P R+ + + +E I+ ++ L + + DI+ Sbjct: 31 KTDGDVKPYDPNTQRRVIRER--LQALEIINERFARQFRMALFNLLR----RSPDITVGG 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L S +LV ++NL G ++ Sbjct: 85 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 144 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + + + + ++ N N+ V T Sbjct: 145 REFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVR-SEMQVKFTNITTSPNDIVVTT 203 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNI 242 ++ I ++ F + IP +++ L+ S + + D A++ + + Sbjct: 204 PFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELEL 262 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L ++ L+ G V+P EK A + +G + + + G + Y +R+ Sbjct: 263 VANFVDIPLRLSKILKLQPGDVLPIDKPEKIVAHV--DGVPVLTSQYGTLNGQYALRVEH 320 Query: 303 RINFDQKSLKN 313 IN SL N Sbjct: 321 LINPILNSLDN 331 >gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1] Length = 334 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 5/248 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R ST E+++ R + I + + ++ N + Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + SS Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313 Query: 298 IRITDRIN 305 IR+ + Sbjct: 314 IRVERSLR 321 >gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2] gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44] Length = 334 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 5/248 (2%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 ++S + ++S + F+ ++ N I C +LV +++ L G + Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R ST E+++ R + I + + ++ N + Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQR-SEMQPQFANI-ATPS 195 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237 E V + + I +++ S + +P TL + SS Q + + R+ Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V + + T++ ++ ++ G I S G ++ C+ G Y Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313 Query: 298 IRITDRIN 305 IR+ + Sbjct: 314 IRVERSLR 321 >gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. Hildenborough] gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4] gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1] Length = 326 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N I Sbjct: 60 RFARLCTNALSNAVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G S + P++ R + +E+ + R I + + + L Sbjct: 120 SRLVFALVENFFGGSG-SQPKIEGREFTRIEQAIVDRVIHIALDNMEESWRPVHDVHLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + +++ S V+ +P T ++ L + ++ Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDSAIGSMVICLPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + V + R K T ++ L++G V+ ++ Sbjct: 236 ERLEVDHAWVARLKERLMETPVELKVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G V N +I Sbjct: 296 IAGVTKFWGLGGTVKANKAFQI 317 >gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM 4028] Length = 325 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VD++ S KF + S + + N + Sbjct: 60 RFSRLCTSALANTMRKRVDVNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALLVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 LV +L+EN G + + P++ R + +E+ + + + I A L E S L Sbjct: 120 TRLVFSLVENFFGGAG-SQPKIEGRDFTPIEQSIIVKVVKIILANLEDAWRPVHEVSIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I+ + +EN S VL +P T ++ L + ++ Sbjct: 179 LRSEINPQFATIV--PPSDVVVVISFEVELENALGSMVLALPYAT-IEPIRSKLYAAFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I F + + V+++ + T + ++ +K+G ++ E Sbjct: 236 ERLEIDHAWISRFRDRLMETPVDMNVTFGTTQITGRQLLDMKVGDILMLDQDEDDMLSGR 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 +G + G V N +I Sbjct: 296 IHGILKFFGLPGFVKGNKAFKI 317 >gi|33596151|ref|NP_883794.1| flagellar motor switch protein FliM [Bordetella parapertussis 12822] gi|33573154|emb|CAE36805.1| flagellar motor switch protein FliM [Bordetella parapertussis] Length = 336 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 84/272 (30%), Gaps = 6/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + M + DI+ + + K++ + + + Sbjct: 60 ERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTY 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 NLV ++++L G ++ R +T E+++ +R + + Sbjct: 120 DPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT--LISLSSQ 217 T +NE V ++ + +P + L Sbjct: 180 YVRSEMHTKFASITG--NNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQD 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 E + + ++++ +++ +++ +K G V+P E Sbjct: 238 TALEEVDQRWAQQLQSQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPE--TVTA 295 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +G + G Y +R+ + IN+D Sbjct: 296 HVDGVPLMEYGYGVFNGRYALRVQNLINYDDT 327 >gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 350 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 108/313 (34%), Gaps = 9/313 (2%) Query: 1 MRGQSIHKNTSPLHPILLARL--TGKLGDKKTIEKISSSL---GYLYKKFLPKIFKEKMD 55 ++G S +++SP P R+ + I + +L + ++ + Sbjct: 16 LKGVSGEEDSSPSEPADTQRIRPYNPATQHRVIRERLHALDIINERFARYFRMSLFNLIR 75 Query: 56 LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS 115 DI+ S + +S + + ++ + +LV +++NL G Sbjct: 76 RSADITVDSVRYQSYSDFARNVPVPTNINLLAMKPLRGTALVVFPPSLVFMVVDNLFGGD 135 Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + + R + E+++ +R + + + ++ N Sbjct: 136 GRFLTKSEGREFTHTEQRIIRRLLGLALEAYQSAWKSVYPLEIDYLR-SEMQAKFANITS 194 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARK 234 NE V ++ + N+AS F +++P + + N S ++ A + Sbjct: 195 SPNEIVINSTFHLEVGNLASDFNIVMPYLMIEPLRSLLNGPLNDSHPDEERQWGKRMASE 254 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Q + + + V+ LK+G V+P E + +G + CE G Sbjct: 255 IKQSQIELIADFAGIDLCIGQVMALKVGDVLPIELPE--TVVARVDGVPVMRCEYGSRNG 312 Query: 295 NYTIRITDRINFD 307 +++ + I+ Sbjct: 313 QRALQVKELIDHS 325 >gi|322833203|ref|YP_004213230.1| flagellar motor switch protein FliM [Rahnella sp. Y9602] gi|321168404|gb|ADW74103.1| flagellar motor switch protein FliM [Rahnella sp. Y9602] Length = 340 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 97/304 (31%), Gaps = 12/304 (3%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + I + + + + DI+ + + + Sbjct: 42 PFDPTTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGAIKIQPYH 95 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + +LV ++NL G ++ R + E Sbjct: 96 DFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 155 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ KR + S + S ++ N N+ V T ++ I Sbjct: 156 QRVIKRMLRLALDAYEDAWSGVYKLSVEYVR-AELQIKFTNITSSPNDIVVTTPFHVEIG 214 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 ++ F + IP +++ L+ S N+ + + Q + + Sbjct: 215 ALSGDFNICIPFS-MIEPLRELLTNPPVENSRNEESQWRENLVHQVQQSELELVANFVEI 273 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L ++ LK G V+P I +G + + + G + + Y +R+ IN Sbjct: 274 PLRLSQILKLKPGDVLPIEKP--DRLIAHVDGVPVLTSQYGTLNEQYALRVEHLINPILN 331 Query: 310 SLKN 313 SL Sbjct: 332 SLDE 335 >gi|156933435|ref|YP_001437351.1| flagellar motor switch protein FliM [Cronobacter sakazakii ATCC BAA-894] gi|156531689|gb|ABU76515.1| hypothetical protein ESA_01253 [Cronobacter sakazakii ATCC BAA-894] Length = 334 Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 33 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 147 HTEQRVINRMLKLALEAYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S + ++ D R+ + + Sbjct: 206 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQNWRDTLVRQVQHSELELIANFA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P ++ + +G + + + G V Y +R+ IN Sbjct: 266 EIPLRLSKILKLKPGDVLPIDKPDRILVHV--DGVPVLTSQYGTVNGQYALRVEHLINP 322 >gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans K601] Length = 334 Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +IS + +++ + F+ ++ + I C Sbjct: 59 ERFARNFRIGLFNMIRRSPEISVGTVGVQRYNAFLRELVVPTNFNIVAIRPLRGSGLIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ +++ L G + ++ R S E ++ +R + I + + Sbjct: 119 EPSLLFGIIDTLYGGVGKLQTRIEGRDFSATELRVIQRLVNLICEEYKKAWQGIYPLELS 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + I +++ + + +P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSVQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + R+ V + + T++ ++ +K G I + A S Sbjct: 237 DAIEVDRRWVKVLTREIQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIRA--S 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302 G ++ C+ G Y IRI Sbjct: 295 IEGVPVFECQYGTHNAKYAIRIEQ 318 >gi|50120652|ref|YP_049819.1| flagellar motor switch protein FliM [Pectobacterium atrosepticum SCRI1043] gi|49611178|emb|CAG74624.1| flagellar motor switch protein [Pectobacterium atrosepticum SCRI1043] Length = 337 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + L Sbjct: 60 ERFARQFRMSLFNLLRRSPDITVGGIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv. campestris str. 8004] gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] Length = 337 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 25/273 (9%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + D+S KF+ +HS + I Sbjct: 59 ERFARLWRIGLFNLIRRSADLSVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++N G ++ R + E ++ + + Q A L + + + Sbjct: 119 EPTLVFTVVDNFFGGDGRFHTRIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDV--- 175 Query: 160 LEDFYDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQE-TLLKTTLI 212 D +Y+ N E+V ++ +E P +L Sbjct: 176 -----DFEYINSEINPHFANIVTPREYVVVCRFHVELEGGGRR----DPHHPAVLDAGAD 226 Query: 213 SLSSQN--KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 +++ +S+ D + V + + + K+ +L+ + LKIG ++P Sbjct: 227 PRTARRRHQSDRNDRDDSWNVMLREQLDTAEVTLSSVLASKRMSLRQLTGLKIGDILPID 286 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L +++ E G N ++IT Sbjct: 287 LPA--QVPLCVEEIPLFTGEFGVSNGNNAVKIT 317 >gi|26248214|ref|NP_754254.1| flagellar motor switch protein FliM [Escherichia coli CFT073] gi|91211163|ref|YP_541149.1| flagellar motor switch protein FliM [Escherichia coli UTI89] gi|110642051|ref|YP_669781.1| flagellar motor switch protein FliM [Escherichia coli 536] gi|117624085|ref|YP_852998.1| flagellar motor switch protein FliM [Escherichia coli APEC O1] gi|237705904|ref|ZP_04536385.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA] gi|331642566|ref|ZP_08343701.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|331647539|ref|ZP_08348631.1| flagellar motor switch protein FliM [Escherichia coli M605] gi|331653357|ref|ZP_08354362.1| flagellar motor switch protein FliM [Escherichia coli M718] gi|331673458|ref|ZP_08374226.1| flagellar motor switch protein FliM [Escherichia coli TA280] gi|331677827|ref|ZP_08378502.1| flagellar motor switch protein FliM [Escherichia coli H591] gi|332278888|ref|ZP_08391301.1| flagellar motor switch protein FliM [Shigella sp. D9] gi|26108618|gb|AAN80821.1|AE016762_74 Flagellar motor switch protein fliM [Escherichia coli CFT073] gi|91072737|gb|ABE07618.1| flagellar motor switch protein FliM [Escherichia coli UTI89] gi|110343643|gb|ABG69880.1| flagellar motor switch protein FliM [Escherichia coli 536] gi|115513209|gb|ABJ01284.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|226900661|gb|EEH86920.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA] gi|331039364|gb|EGI11584.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|331043263|gb|EGI15401.1| flagellar motor switch protein FliM [Escherichia coli M605] gi|331049455|gb|EGI21527.1| flagellar motor switch protein FliM [Escherichia coli M718] gi|331069656|gb|EGI41043.1| flagellar motor switch protein FliM [Escherichia coli TA280] gi|331074287|gb|EGI45607.1| flagellar motor switch protein FliM [Escherichia coli H591] gi|332101240|gb|EGJ04586.1| flagellar motor switch protein FliM [Shigella sp. D9] Length = 349 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 336 INPILNSLNEEQPK 349 >gi|237731993|ref|ZP_04562474.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2] gi|226907532|gb|EEH93450.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2] Length = 349 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 10/318 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + +E I+ ++ L + + DI Sbjct: 41 ISGIAKESDIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDI 94 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S +LV ++NL G Sbjct: 95 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 154 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + ++ N N+ Sbjct: 155 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 213 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + L+ S N+ ++ + R+ Sbjct: 214 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 273 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G V Y +R Sbjct: 274 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 331 Query: 300 ITDRINFDQKSLKNFLHK 317 + IN SL K Sbjct: 332 VEHLINPILNSLNEEQPK 349 >gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans BC] gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans BC] Length = 334 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +IS + +++ + F+ ++ + I C Sbjct: 59 ERFARNFRIGLFNMIRRSPEISVGTVAVQRYNAFLRELVVPTNFNIVAIRPLRGSGLIVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ +++ L G + ++ R S E ++ +R + I + + Sbjct: 119 EPSLLFGIIDTLYGGVGKLQTRIEGRDFSATELRVIQRLVNLICEEYKKAWQGIYPLELS 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + I +++ + + +P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVVSTAFQLEIGDLSGAIHICMPYATLEPIRDVLYSSVQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + R+ V + + T++ ++ +K G I + A S Sbjct: 237 DAIEVDRRWVKVLTREIQAAEVTLVAELARADATVEQLLAMKPGDFIELDREPRIRA--S 294 Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302 G ++ C+ G Y IRI Sbjct: 295 IEGVPVFECQYGTHNAKYAIRIEQ 318 >gi|253688959|ref|YP_003018149.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755537|gb|ACT13613.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 337 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + L Sbjct: 60 ERFARQFRMGLFNLLRRSPDITVGGIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIIAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVMTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|281601385|gb|ADA74369.1| Flagellar motor switch protein FliM [Shigella flexneri 2002017] Length = 349 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 45 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 98 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 217 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335 Query: 304 INF 306 IN Sbjct: 336 INP 338 >gi|291613061|ref|YP_003523218.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus ES-1] gi|291583173|gb|ADE10831.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus ES-1] Length = 333 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 98/292 (33%), Gaps = 13/292 (4%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R+ G T+E I+ L++ L +IS + KFS I + Sbjct: 43 ERIVR--GRMPTMEIINERFARLFRISLYNFIHRSS----EISVGPVRVMKFSEFIRNLP 96 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138 + + + NLV ++++L G ++ R + E ++ ++ Sbjct: 97 VPANLNLVQVKPLRGSALFIFDPNLVFMVVDSLFGGDGRFHTRVEGREFTQTEHRIIQKL 156 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + + T Q+ + NE V + V S Sbjct: 157 LDVVFQTYGKSWETVQKLDFEFIRSEV--NPQFANIATPNEVVVVTTFEVEFTGVGGSIH 214 Query: 199 LIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +P +++ L S + + + + +R+ V + + T ++ V Sbjct: 215 ICMPYA-MIEPIREMLYSTMQGDHVIADKRWLHMLSRQIQLAEVELTAVLGHATTNVEHV 273 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + ++ G +IP + ++ + + C+ G Y +++ + + Sbjct: 274 LKMRAGDIIPLEVEDTIQVLV--DTVPVMECKYGSSNGQYALKVEKMLATEH 323 >gi|323174676|gb|EFZ60296.1| flagellar motor switch protein FliM [Escherichia coli LT-68] Length = 334 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 99/303 (32%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + +T+E I+ ++ L + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRER--LQTLEIINERFARHFRMGLFNLLR----RSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|170769401|ref|ZP_02903854.1| flagellar motor switch protein FliM [Escherichia albertii TW07627] gi|170121725|gb|EDS90656.1| flagellar motor switch protein FliM [Escherichia albertii TW07627] Length = 334 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 97/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 STESDIRPYDPNTQQRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + + ++ N N+ V Sbjct: 144 REFTDTEQRVINRMLKLALEGYSDAWKAINPLNVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ Q S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPQENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPSDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|332095507|gb|EGJ00523.1| flagellar motor switch protein FliM [Shigella dysenteriae 155-74] Length = 334 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ K I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRKRLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|283832660|ref|ZP_06352401.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC 29220] gi|291072334|gb|EFE10443.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC 29220] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 103/318 (32%), Gaps = 10/318 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + + +E I+ ++ L + + DI Sbjct: 26 ISGIAKESDIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S +LV ++NL G Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + + ++ N N+ Sbjct: 140 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + L+ S N+ ++ + R+ Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G V Y +R Sbjct: 259 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 316 Query: 300 ITDRINFDQKSLKNFLHK 317 + IN SL K Sbjct: 317 VEHLINPILNSLNEEQPK 334 >gi|218549270|ref|YP_002383061.1| flagellar motor switch protein FliM [Escherichia fergusonii ATCC 35469] gi|218356811|emb|CAQ89439.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114212|gb|EGC08185.1| flagellar motor switch protein FliM [Escherichia fergusonii B253] gi|325497687|gb|EGC95546.1| flagellar motor switch protein FliM [Escherichia fergusonii ECD227] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 10/318 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + + P P R+ + I + + + + DI Sbjct: 26 ISGITNESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDI 79 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + + + L + S LV ++NL G Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPALVFIAVDNLFGGDGRFPT 139 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 ++ R + E+++ R + ++ N N+ Sbjct: 140 KVEGREFTHTEQRVINRMLKLALEGYRDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDI 198 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLN 239 V ++ I N+ F + +P + L+ S ++ ++ + R+ Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRNNLVRQVQHSQ 258 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + L ++ LK G V+P I +G + + + G + Y +R Sbjct: 259 LELVANFAEISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316 Query: 300 ITDRINFDQKSLKNFLHK 317 I IN SL K Sbjct: 317 IEHLINPILNSLNEEQPK 334 >gi|300994270|ref|ZP_07180822.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1] gi|300304935|gb|EFJ59455.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|227328351|ref|ZP_03832375.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 60 ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|227112534|ref|ZP_03826190.1| flagellar motor switch protein FliM [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 337 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 60 ERFARQFRMGLFNLLRRSPDITVGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVF 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S +LV ++NL G ++ R + E+++ KR + + + + Sbjct: 120 SPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIE 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS--SQ 217 ++ N N+ V T ++ I ++ F + IP +++ L+ Sbjct: 180 YVR-SEMQVKFTNITTSPNDIVVTTPFHVEIGSLTGEFNICIPFS-MIEPLRELLANPPL 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + + D A++ + + L ++ L+ G V+P +K A + Sbjct: 238 ENSRQEDQSWRDTLAKQVQHSELELVASFVDIPLRLSKILKLQPGDVLPIDKPDKIVAHV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN SL N Sbjct: 298 --DGVPVLTSQYGTLNGQYALRVEHLINPILNSLDN 331 >gi|15831938|ref|NP_310711.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Sakai] gi|82543593|ref|YP_407540.1| flagellar motor switch protein FliM [Shigella boydii Sb227] gi|157156914|ref|YP_001463247.1| flagellar motor switch protein FliM [Escherichia coli E24377A] gi|157161416|ref|YP_001458734.1| flagellar motor switch protein FliM [Escherichia coli HS] gi|168751874|ref|ZP_02776896.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4113] gi|168758259|ref|ZP_02783266.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4401] gi|168764429|ref|ZP_02789436.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4501] gi|168771552|ref|ZP_02796559.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4486] gi|168777372|ref|ZP_02802379.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4196] gi|168783342|ref|ZP_02808349.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4076] gi|168790295|ref|ZP_02815302.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869] gi|168802292|ref|ZP_02827299.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508] gi|170019722|ref|YP_001724676.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739] gi|170684212|ref|YP_001743300.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5] gi|188494069|ref|ZP_03001339.1| flagellar motor switch protein FliM [Escherichia coli 53638] gi|191168308|ref|ZP_03030101.1| flagellar motor switch protein FliM [Escherichia coli B7A] gi|191173313|ref|ZP_03034843.1| flagellar motor switch protein FliM [Escherichia coli F11] gi|193071140|ref|ZP_03052064.1| flagellar motor switch protein FliM [Escherichia coli E110019] gi|194429931|ref|ZP_03062441.1| flagellar motor switch protein FliM [Escherichia coli B171] gi|194439587|ref|ZP_03071660.1| flagellar motor switch protein FliM [Escherichia coli 101-1] gi|195939251|ref|ZP_03084633.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4024] gi|208810354|ref|ZP_03252230.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4206] gi|208816529|ref|ZP_03257649.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4045] gi|208818778|ref|ZP_03259098.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4042] gi|209396357|ref|YP_002271061.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4115] gi|209919367|ref|YP_002293451.1| flagellar motor switch protein FliM [Escherichia coli SE11] gi|215487145|ref|YP_002329576.1| flagellar motor switch protein FliM [Escherichia coli O127:H6 str. E2348/69] gi|217328609|ref|ZP_03444690.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14588] gi|218554525|ref|YP_002387438.1| flagellar motor switch protein FliM [Escherichia coli IAI1] gi|218558802|ref|YP_002391715.1| flagellar motor switch protein FliM [Escherichia coli S88] gi|218689940|ref|YP_002398152.1| flagellar motor switch protein FliM [Escherichia coli ED1a] gi|218695550|ref|YP_002403217.1| flagellar motor switch protein FliM [Escherichia coli 55989] gi|218699494|ref|YP_002407123.1| flagellar motor switch protein FliM [Escherichia coli IAI39] gi|218705438|ref|YP_002412957.1| flagellar motor switch protein FliM [Escherichia coli UMN026] gi|227885626|ref|ZP_04003431.1| flagellar motor switch protein FliM [Escherichia coli 83972] gi|254793595|ref|YP_003078432.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14359] gi|256017862|ref|ZP_05431727.1| flagellar motor switch protein FliM [Shigella sp. D9] gi|256022397|ref|ZP_05436262.1| flagellar motor switch protein FliM [Escherichia sp. 4_1_40B] gi|260844344|ref|YP_003222122.1| flagellar motor switching and energizing component FliM [Escherichia coli O103:H2 str. 12009] gi|260855920|ref|YP_003229811.1| flagellar motor switching and energizing component FliM [Escherichia coli O26:H11 str. 11368] gi|260868538|ref|YP_003234940.1| flagellar motor switching and energizing component FliM [Escherichia coli O111:H- str. 11128] gi|261227560|ref|ZP_05941841.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. FRIK2000] gi|261254616|ref|ZP_05947149.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. FRIK966] gi|291283122|ref|YP_003499940.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str. CB9615] gi|293405428|ref|ZP_06649420.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412] gi|293410301|ref|ZP_06653877.1| flagellar motor switch protein FliM [Escherichia coli B354] gi|293415255|ref|ZP_06657898.1| flagellar motor switch protein FliM [Escherichia coli B185] gi|293446325|ref|ZP_06662747.1| flagellar motor switch protein FliM [Escherichia coli B088] gi|298381072|ref|ZP_06990671.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302] gi|300818635|ref|ZP_07098843.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1] gi|300822285|ref|ZP_07102426.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7] gi|300899202|ref|ZP_07117478.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1] gi|300904835|ref|ZP_07122661.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1] gi|300920164|ref|ZP_07136614.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1] gi|300923892|ref|ZP_07139907.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1] gi|300931158|ref|ZP_07146505.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1] gi|300940400|ref|ZP_07154985.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1] gi|300951570|ref|ZP_07165403.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1] gi|300956539|ref|ZP_07168821.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1] gi|301018205|ref|ZP_07182720.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1] gi|301305288|ref|ZP_07211385.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1] gi|301327732|ref|ZP_07220937.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1] gi|301644596|ref|ZP_07244585.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1] gi|306814232|ref|ZP_07448398.1| flagellar motor switch protein FliM [Escherichia coli NC101] gi|307138612|ref|ZP_07497968.1| flagellar motor switch protein FliM [Escherichia coli H736] gi|307312469|ref|ZP_07592103.1| flagellar motor switch protein FliM [Escherichia coli W] gi|309795948|ref|ZP_07690361.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7] gi|312967142|ref|ZP_07781360.1| flagellar motor switch protein FliM [Escherichia coli 2362-75] gi|312973838|ref|ZP_07788010.1| flagellar motor switch protein FliM [Escherichia coli 1827-70] gi|331657991|ref|ZP_08358953.1| flagellar motor switch protein FliM [Escherichia coli TA206] gi|331663441|ref|ZP_08364351.1| flagellar motor switch protein FliM [Escherichia coli TA143] gi|331668636|ref|ZP_08369484.1| flagellar motor switch protein FliM [Escherichia coli TA271] gi|331683497|ref|ZP_08384098.1| flagellar motor switch protein FliM [Escherichia coli H299] gi|13362152|dbj|BAB36107.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. Sakai] gi|81245004|gb|ABB65712.1| FliM [Shigella boydii Sb227] gi|157067096|gb|ABV06351.1| flagellar motor switch protein FliM [Escherichia coli HS] gi|157078944|gb|ABV18652.1| flagellar motor switch protein FliM [Escherichia coli E24377A] gi|169754650|gb|ACA77349.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739] gi|170521930|gb|ACB20108.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5] gi|187767405|gb|EDU31249.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4196] gi|188014186|gb|EDU52308.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4113] gi|188489268|gb|EDU64371.1| flagellar motor switch protein FliM [Escherichia coli 53638] gi|188999277|gb|EDU68263.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4076] gi|189354878|gb|EDU73297.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4401] gi|189359725|gb|EDU78144.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4486] gi|189365559|gb|EDU83975.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4501] gi|189370212|gb|EDU88628.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC869] gi|189375729|gb|EDU94145.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC508] gi|190901680|gb|EDV61436.1| flagellar motor switch protein FliM [Escherichia coli B7A] gi|190906430|gb|EDV66039.1| flagellar motor switch protein FliM [Escherichia coli F11] gi|192955535|gb|EDV86014.1| flagellar motor switch protein FliM [Escherichia coli E110019] gi|194412020|gb|EDX28332.1| flagellar motor switch protein FliM [Escherichia coli B171] gi|194421496|gb|EDX37510.1| flagellar motor switch protein FliM [Escherichia coli 101-1] gi|208724870|gb|EDZ74577.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4206] gi|208730872|gb|EDZ79561.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4045] gi|208738901|gb|EDZ86583.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4042] gi|209157757|gb|ACI35190.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC4115] gi|209766818|gb|ACI81721.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766820|gb|ACI81722.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766822|gb|ACI81723.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766824|gb|ACI81724.1| flagellar motor switch protein FliM [Escherichia coli] gi|209766826|gb|ACI81725.1| flagellar motor switch protein FliM [Escherichia coli] gi|209912626|dbj|BAG77700.1| flagellar motor switch protein FliM [Escherichia coli SE11] gi|215265217|emb|CAS09607.1| flagellar motor switching and energizing component [Escherichia coli O127:H6 str. E2348/69] gi|217317956|gb|EEC26383.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. TW14588] gi|218352282|emb|CAU98039.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361293|emb|CAQ98877.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218365571|emb|CAR03298.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|218369480|emb|CAR17245.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218427504|emb|CAR08399.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|218432535|emb|CAR13428.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033684|emb|CAP76425.1| flagellar motor switch protein fliM [Escherichia coli LF82] gi|227837199|gb|EEJ47665.1| flagellar motor switch protein FliM [Escherichia coli 83972] gi|254592995|gb|ACT72356.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754569|dbj|BAI26071.1| flagellar motor switching and energizing component FliM [Escherichia coli O26:H11 str. 11368] gi|257759491|dbj|BAI30988.1| flagellar motor switching and energizing component FliM [Escherichia coli O103:H2 str. 12009] gi|257764894|dbj|BAI36389.1| flagellar motor switching and energizing component FliM [Escherichia coli O111:H- str. 11128] gi|281179007|dbj|BAI55337.1| flagellar motor switch protein FliM [Escherichia coli SE15] gi|284921853|emb|CBG34928.1| flagellar motor switch protein FliM [Escherichia coli 042] gi|290762995|gb|ADD56956.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str. CB9615] gi|291323155|gb|EFE62583.1| flagellar motor switch protein FliM [Escherichia coli B088] gi|291427636|gb|EFF00663.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412] gi|291432903|gb|EFF05882.1| flagellar motor switch protein FliM [Escherichia coli B185] gi|291470769|gb|EFF13253.1| flagellar motor switch protein FliM [Escherichia coli B354] gi|294492735|gb|ADE91491.1| flagellar motor switch protein FliM [Escherichia coli IHE3034] gi|298278514|gb|EFI20028.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302] gi|300316639|gb|EFJ66423.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1] gi|300357183|gb|EFJ73053.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1] gi|300399792|gb|EFJ83330.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1] gi|300403262|gb|EFJ86800.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1] gi|300412821|gb|EFJ96131.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1] gi|300419855|gb|EFK03166.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1] gi|300449197|gb|EFK12817.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1] gi|300454794|gb|EFK18287.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1] gi|300461015|gb|EFK24508.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1] gi|300525168|gb|EFK46237.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7] gi|300528807|gb|EFK49869.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1] gi|300839494|gb|EFK67254.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1] gi|300845732|gb|EFK73492.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1] gi|301077071|gb|EFK91877.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1] gi|305852391|gb|EFM52842.1| flagellar motor switch protein FliM [Escherichia coli NC101] gi|306907640|gb|EFN38143.1| flagellar motor switch protein FliM [Escherichia coli W] gi|307553958|gb|ADN46733.1| flagellar motor switch protein FliM [Escherichia coli ABU 83972] gi|307626579|gb|ADN70883.1| flagellar motor switch protein FliM [Escherichia coli UM146] gi|308120398|gb|EFO57660.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7] gi|309702234|emb|CBJ01551.1| flagellar motor switch protein FliM [Escherichia coli ETEC H10407] gi|310332433|gb|EFP99668.1| flagellar motor switch protein FliM [Escherichia coli 1827-70] gi|312288606|gb|EFR16508.1| flagellar motor switch protein FliM [Escherichia coli 2362-75] gi|312946538|gb|ADR27365.1| flagellar motor switch protein FliM [Escherichia coli O83:H1 str. NRG 857C] gi|315061245|gb|ADT75572.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257223|gb|EFU37191.1| flagellar motor switch protein FliM [Escherichia coli MS 85-1] gi|315286659|gb|EFU46092.1| flagellar motor switch protein FliM [Escherichia coli MS 110-3] gi|315290262|gb|EFU49640.1| flagellar motor switch protein FliM [Escherichia coli MS 153-1] gi|315296479|gb|EFU55776.1| flagellar motor switch protein FliM [Escherichia coli MS 16-3] gi|320175465|gb|EFW50564.1| Flagellar motor switch protein FliM [Shigella dysenteriae CDC 74-1112] gi|320184483|gb|EFW59287.1| Flagellar motor switch protein FliM [Shigella flexneri CDC 796-83] gi|320191919|gb|EFW66566.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. EC1212] gi|320194342|gb|EFW68973.1| Flagellar motor switch protein FliM [Escherichia coli WV_060327] gi|320198635|gb|EFW73235.1| Flagellar motor switch protein FliM [Escherichia coli EC4100B] gi|320641793|gb|EFX11181.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. G5101] gi|320647152|gb|EFX15985.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str. 493-89] gi|320652436|gb|EFX20734.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str. H 2687] gi|320658038|gb|EFX25800.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658610|gb|EFX26304.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str. USDA 5905] gi|320668508|gb|EFX35335.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str. LSU-61] gi|323152724|gb|EFZ38996.1| flagellar motor switch protein FliM [Escherichia coli EPECa14] gi|323158576|gb|EFZ44590.1| flagellar motor switch protein FliM [Escherichia coli E128010] gi|323180802|gb|EFZ66342.1| flagellar motor switch protein FliM [Escherichia coli 1180] gi|323183929|gb|EFZ69316.1| flagellar motor switch protein FliM [Escherichia coli 1357] gi|323186821|gb|EFZ72141.1| flagellar motor switch protein FliM [Escherichia coli RN587/1] gi|323378178|gb|ADX50446.1| flagellar motor switch protein FliM [Escherichia coli KO11] gi|323937215|gb|EGB33495.1| flagellar motor switch protein FliM [Escherichia coli E1520] gi|323940396|gb|EGB36587.1| flagellar motor switch protein FliM [Escherichia coli E482] gi|323948351|gb|EGB44338.1| flagellar motor switch protein FliM [Escherichia coli H120] gi|323952438|gb|EGB48311.1| flagellar motor switch protein FliM [Escherichia coli H252] gi|323956341|gb|EGB52084.1| flagellar motor switch protein FliM [Escherichia coli H263] gi|323961989|gb|EGB57588.1| flagellar motor switch protein FliM [Escherichia coli H489] gi|323972755|gb|EGB67955.1| flagellar motor switch protein FliM [Escherichia coli TA007] gi|324005856|gb|EGB75075.1| flagellar motor switch protein FliM [Escherichia coli MS 57-2] gi|324013500|gb|EGB82719.1| flagellar motor switch protein FliM [Escherichia coli MS 60-1] gi|324018854|gb|EGB88073.1| flagellar motor switch protein FliM [Escherichia coli MS 117-3] gi|324118994|gb|EGC12883.1| flagellar motor switch protein FliM [Escherichia coli E1167] gi|326342355|gb|EGD66136.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. 1044] gi|326344860|gb|EGD68607.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str. 1125] gi|330911751|gb|EGH40261.1| flagellar motor switch protein FliM [Escherichia coli AA86] gi|331056239|gb|EGI28248.1| flagellar motor switch protein FliM [Escherichia coli TA206] gi|331059240|gb|EGI31217.1| flagellar motor switch protein FliM [Escherichia coli TA143] gi|331063830|gb|EGI35741.1| flagellar motor switch protein FliM [Escherichia coli TA271] gi|331079712|gb|EGI50909.1| flagellar motor switch protein FliM [Escherichia coli H299] gi|332093098|gb|EGI98162.1| flagellar motor switch protein FliM [Shigella boydii 5216-82] gi|332096930|gb|EGJ01919.1| flagellar motor switch protein FliM [Shigella boydii 3594-74] gi|332343671|gb|AEE57005.1| flagellar motor switch protein FliM [Escherichia coli UMNK88] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|260598454|ref|YP_003211025.1| flagellar motor switch protein FliM [Cronobacter turicensis z3032] gi|260217631|emb|CBA31927.1| Flagellar motor switch protein fliM [Cronobacter turicensis z3032] Length = 334 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 96/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 33 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 147 HTEQRVINRMLKLALEAYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S + + D R+ + + Sbjct: 206 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQHWRDNLVRQVQHSELELIANFA 265 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P ++ + +G + + + G V Y +R+ IN Sbjct: 266 EIPLRLSKILKLKPGDVLPIEKPDRILVHV--DGVPVLTSQYGTVSGQYALRVEHLINP 322 >gi|157145261|ref|YP_001452580.1| flagellar motor switch protein FliM [Citrobacter koseri ATCC BAA-895] gi|157082466|gb|ABV12144.1| hypothetical protein CKO_00998 [Citrobacter koseri ATCC BAA-895] Length = 334 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 100/310 (32%), Gaps = 10/310 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPI 324 Query: 308 QKSLKNFLHK 317 SL K Sbjct: 325 LNSLNEEQPK 334 >gi|193066386|ref|ZP_03047434.1| flagellar motor switch protein FliM [Escherichia coli E22] gi|192925971|gb|EDV80617.1| flagellar motor switch protein FliM [Escherichia coli E22] Length = 334 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKALNPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|311279113|ref|YP_003941344.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1] gi|308748308|gb|ADO48060.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1] Length = 334 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEAYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + + ++ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRSEDQNWRENLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DISLRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323 >gi|291617855|ref|YP_003520597.1| FliM [Pantoea ananatis LMG 20103] gi|291152885|gb|ADD77469.1| FliM [Pantoea ananatis LMG 20103] gi|327394272|dbj|BAK11694.1| flagellar motor switch protein FliM [Pantoea ananatis AJ13355] Length = 335 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + I + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMALFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + ++ N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + + ++ S ++ D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLREMLVNPPLENSRSEDTHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L V+ LK G V+P E I +G + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRVLQLKPGDVLPIEKPE--RIIAHVDGVPVLTSQYGTLNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|194434971|ref|ZP_03067214.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012] gi|194416806|gb|EDX32932.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012] Length = 334 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|30063384|ref|NP_837555.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|56480007|ref|NP_707830.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301] gi|30041636|gb|AAP17364.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|56383558|gb|AAN43537.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301] gi|313650167|gb|EFS14580.1| flagellar motor switch protein FliM [Shigella flexneri 2a str. 2457T] gi|332757511|gb|EGJ87846.1| flagellar motor switch protein FliM [Shigella flexneri K-671] gi|333017577|gb|EGK36889.1| flagellar motor switch protein FliM [Shigella flexneri K-304] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|320182738|gb|EFW57622.1| Flagellar motor switch protein FliM [Shigella boydii ATCC 9905] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|332756101|gb|EGJ86454.1| flagellar motor switch protein FliM [Shigella flexneri 4343-70] gi|332757253|gb|EGJ87590.1| flagellar motor switch protein FliM [Shigella flexneri 2747-71] gi|332766683|gb|EGJ96887.1| flagellar motor switch protein FliM [Shigella flexneri 2930-71] gi|333003346|gb|EGK22892.1| flagellar motor switch protein FliM [Shigella flexneri K-218] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|323968361|gb|EGB63768.1| flagellar motor switch protein FliM [Escherichia coli M863] gi|323977874|gb|EGB72960.1| flagellar motor switch protein FliM [Escherichia coli TW10509] gi|327253077|gb|EGE64731.1| flagellar motor switch protein FliM [Escherichia coli STEC_7v] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G + Y +RI IN Sbjct: 267 DISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 323 >gi|16760920|ref|NP_456537.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141388|ref|NP_804730.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424998|ref|ZP_03357748.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584776|ref|ZP_03366602.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855271|ref|ZP_03383511.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829468|ref|ZP_06547080.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298898|pir||AI0752 flagellar motor switch protein FliM [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503217|emb|CAD05724.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi] gi|29137015|gb|AAO68579.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771] Length = 169 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 +Y C+ G +H+I N A+L +WS N + C N VITL+ Sbjct: 61 NYLGCEIGYKNHLIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDR 120 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES-SPNLEDFYDIDYLKKN 172 + +R LS +E LA +I+ C + Q + E F + + Sbjct: 121 EPADRLLSIIELDLAVMVFDKIAK----CCARGQRARRFRTEPFAPHAHDARP 169 >gi|161502902|ref|YP_001570014.1| flagellar motor switch protein FliM [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864249|gb|ABX20872.1| hypothetical protein SARI_00961 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|16765314|ref|NP_460929.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180551|ref|YP_216968.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613455|ref|YP_001587420.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552791|ref|ZP_02346542.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993551|ref|ZP_02574645.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234149|ref|ZP_02659207.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239216|ref|ZP_02664274.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244827|ref|ZP_02669759.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259737|ref|ZP_02681710.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462482|ref|ZP_02696413.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823019|ref|ZP_02835019.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444199|ref|YP_002041241.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451006|ref|YP_002046027.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194737897|ref|YP_002115010.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249640|ref|YP_002146047.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265099|ref|ZP_03165173.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245200|ref|YP_002215110.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389660|ref|ZP_03216271.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931068|ref|ZP_03221894.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352330|ref|YP_002226131.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856511|ref|YP_002243162.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583525|ref|YP_002637323.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912451|ref|ZP_04656288.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|120346|sp|P26418|FLIM_SALTY RecName: Full=Flagellar motor switch protein FliM gi|154035|gb|AAA27104.1| fliM flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420511|gb|AAL20888.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128184|gb|AAX65887.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362819|gb|ABX66587.1| hypothetical protein SPAB_01172 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402862|gb|ACF63084.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409310|gb|ACF69529.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194713399|gb|ACF92620.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634275|gb|EDX52627.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213343|gb|ACH50740.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243354|gb|EDY25974.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288083|gb|EDY27470.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939716|gb|ACH77049.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602105|gb|EDZ00651.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320112|gb|EDZ05317.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272111|emb|CAR36964.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322661|gb|EDZ10500.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328413|gb|EDZ15177.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331867|gb|EDZ18631.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336350|gb|EDZ23114.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340670|gb|EDZ27434.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350615|gb|EDZ37246.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708314|emb|CAR32617.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468052|gb|ACN45882.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247142|emb|CBG24965.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993965|gb|ACY88850.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158490|emb|CBW18000.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912966|dbj|BAJ36940.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085405|emb|CBY95186.1| Flagellar motor switch protein fliM [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224621|gb|EFX49684.1| Flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322616969|gb|EFY13877.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618208|gb|EFY15100.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625879|gb|EFY22698.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626331|gb|EFY23141.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632746|gb|EFY29491.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639088|gb|EFY35781.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640404|gb|EFY37060.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647235|gb|EFY43734.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649917|gb|EFY46338.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655525|gb|EFY51833.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660303|gb|EFY56541.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662984|gb|EFY59191.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668169|gb|EFY64328.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674072|gb|EFY70166.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675576|gb|EFY71650.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683013|gb|EFY79029.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686707|gb|EFY82685.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715027|gb|EFZ06598.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130255|gb|ADX17685.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195405|gb|EFZ80585.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198067|gb|EFZ83184.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204461|gb|EFZ89467.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207551|gb|EFZ92499.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211010|gb|EFZ95870.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217536|gb|EGA02255.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220731|gb|EGA05175.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226682|gb|EGA10879.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231558|gb|EGA15671.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236001|gb|EGA20080.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240571|gb|EGA24614.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245463|gb|EGA29463.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247581|gb|EGA31532.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253956|gb|EGA37780.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255516|gb|EGA39277.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262114|gb|EGA45677.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266237|gb|EGA49727.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270654|gb|EGA54095.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622858|gb|EGE29203.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627380|gb|EGE33723.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988865|gb|AEF07848.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 334 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont of Hydra magnipapillata] Length = 334 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + +IS ++S + F+ ++ + + C Sbjct: 59 ERFARNLRVGLFNFIRRSPEISVGPVVVQRYSAFLRELAVPTNFNIVAIRPLRGSGLVVC 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +++ L G + ++ R S E+++ R + I+ + Sbjct: 119 EPALVFGVIDTLYGGIGKFQTRIEGRDFSATEQRVINRLVDVITTEYKKAWKGIYPLELE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QN 218 + ++ N +E V + + + I ++ + P TL + SS Q Sbjct: 179 YQR-SEMQPQFANI-ATPSEIVISTSFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQG 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S ++ R+ V I + T++ ++ +K G I + A + Sbjct: 237 DSIEVDRRWVNVLTREIQAAEVTIVAELARADATVEQLLGMKKGDFIELDRAPRIQATV- 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKN 313 +G I+ C+ G Y IRI + DQ L Sbjct: 296 -DGVPIFECQYGTHNSKYAIRIEKALRGNDQNWLGE 330 >gi|15802380|ref|NP_288406.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 EDL933] gi|12516052|gb|AAG56960.1|AE005417_2 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] Length = 334 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 95/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGX 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|301029402|ref|ZP_07192496.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1] gi|299877706|gb|EFI85917.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1] Length = 334 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 96/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKQLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|238755314|ref|ZP_04616657.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473] gi|238706450|gb|EEP98824.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473] Length = 334 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 90/300 (30%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRERLHALEI------INERFARHFRMGLFNLLRRSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLVHLKPLRGTALFVFEPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + +I N N+ V T ++ Sbjct: 147 HTEQRVITRMLRLALDAYRDAWGAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L+ S + + + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSNWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 265 AEIPLRLSQILKLKPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|333003041|gb|EGK22595.1| flagellar motor switch protein FliM [Shigella flexneri VA-6] Length = 334 Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVEFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G ++P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDILPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|317492415|ref|ZP_07950844.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919754|gb|EFV41084.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium 9_2_54FAA] Length = 337 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 105/299 (35%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 36 DVRPYDPTTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAVKIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L+ + + +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLIHLNPLRGTALMVFAPSLVFMAVDNLFGGDGRFPTKVDGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ KR + S + +I N N+ V T + Sbjct: 150 HTEQRVIKRMLRLALDAYRDAWSAIYKLEVEYVR-SEIQVKFTNITTSPNDIVVTTPFTV 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRIN 247 + ++ F + IP + + ++ ++ Q + D +++ + + Sbjct: 209 EVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVANFV 268 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L +V+ L+ G V+P EK I + +G + +C+ G Y +R+ IN Sbjct: 269 DIPLRLSEVLKLQPGDVLPIEKPEK--LIANVDGVPVLTCQYGSQNGQYALRVERLINP 325 >gi|146312182|ref|YP_001177256.1| flagellar motor switch protein FliM [Enterobacter sp. 638] gi|145319058|gb|ABP61205.1| flagellar motor switch protein FliM [Enterobacter sp. 638] Length = 334 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 98/311 (31%), Gaps = 10/311 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 33 PEIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRI 86 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + L S +LV ++NL G ++ R Sbjct: 87 QPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ R + + ++ N N+ V + Sbjct: 147 THTEQRVINRMLKLALESYSDAWKAIHPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFH 205 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + I N+ F + +P + + ++ S N+ ++ + R+ + + Sbjct: 206 VEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRNEDQNWRENLVRQVQHSQLELVASF 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I + + + + G V Y +R+ IN Sbjct: 266 ADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDDVPVLTSQYGTVNGQYALRVEHLINP 323 Query: 307 DQKSLKNFLHK 317 SL K Sbjct: 324 ILNSLNEEQPK 334 >gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1] Length = 331 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 111/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V I+ S F + S + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ ++L+ L+G S + + N L+ +E K+ + L + Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L + + + NE V I++N I + + IP +L+ Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +LS Q ++ S + + Q + + + L T++D +T+++G V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAQLPLSVELGLTDITIEDFLTMQVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLDQKIEAPLLLKVGTLPKFTVQPGKKGKKLAIQIIDPLKGGDE 329 >gi|300717238|ref|YP_003742041.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063074|emb|CAX60194.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 335 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 100/300 (33%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ Y+ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRMVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + ++ ++ N N+ V T + Sbjct: 148 ATEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVITTPFQV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I N+ F + IP +++ +L S + ++ D ++ + + Sbjct: 207 EIGNLVGEFNICIPFS-MIEPLRETLVNPPLENSRQEDQNWRDTLVKQVQHSELELIANF 265 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 266 GEVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323 >gi|56413111|ref|YP_150186.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362037|ref|YP_002141674.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127368|gb|AAV76874.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093514|emb|CAR58975.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 334 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGTIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068] Length = 362 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 106/304 (34%), Gaps = 14/304 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + +P R+ + ++ + G + L + + V++ TS Sbjct: 44 RTREKVTPYDFKRPERV--GKEQMRALQSLHEGFGRNFGAALSALLRSI----VEVKLTS 97 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 +S + S + F+ N + + +++ +++ LLG E P Sbjct: 98 VDQLTYSEFVFSLENPTCFNLLRAEPLEGNLILDINPSILYPIIDRLLGGGKEAGPV-AR 156 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E +L R L +++ L + NE V I Sbjct: 157 RPLTEIELRLVSRITHLFLQELKHAWEGVLPLKLSVDRVESNPQLVQIV--PPNEVVVLI 214 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE----NQSEDLIDPFARKTYQLNV 240 + +T+ +V L IP ++ + L+S N + I +++ Q V Sbjct: 215 SFELTLNDVRGMINLCIPFNSIER-IGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKV 273 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + + T D++ L++G +I +T ++ G + G + + +RI Sbjct: 274 ELVVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRI 333 Query: 301 TDRI 304 I Sbjct: 334 EQSI 337 >gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM 6192] gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM 6578] Length = 341 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 11/285 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI + + L L + V + S + I S ++ Sbjct: 53 RTISIMHETFARLTTTSLSAQLRSL----VQVHVASVDQLTYEEFIRSIPNPTTIGIINM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + ++++ L G + +R LS +E + + + +I + + Sbjct: 109 DPLKGSAILEIDPTITYSIIDRLFGGPGDGSVVPRDRDLSDIETTVMEGIMVRILGNMRE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + P L + E V + + + +V IP T ++ Sbjct: 169 AWSQVIDLRPRLGQIDTNPQFAQIV--PPTEMVVLVTLETKVGDVEGMMNFCIPYLT-IE 225 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+Q + + + + VN+ + ++D+++++ G V Sbjct: 226 PIISKLSAQYWYSSVRKGGTTENLAILKERISSVEVNLVVEVGSMNLKMRDILSIQKGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I R K +L + + C GRVGK +++ ++I Q+ Sbjct: 286 IMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLAVQLVEKIEESQE 330 >gi|194471387|ref|ZP_03077371.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457751|gb|EDX46590.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 334 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 98/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y++R+ IN Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYSLRVEHLINP 323 >gi|261340410|ref|ZP_05968268.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC 35316] gi|288317502|gb|EFC56440.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC 35316] Length = 334 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 NIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DVSMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINP 323 >gi|74312485|ref|YP_310904.1| flagellar motor switch protein FliM [Shigella sonnei Ss046] gi|73855962|gb|AAZ88669.1| flagellar motor switch protein FliM [Shigella sonnei Ss046] gi|323168934|gb|EFZ54614.1| flagellar motor switch protein FliM [Shigella sonnei 53G] Length = 334 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 97/314 (30%), Gaps = 10/314 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G + ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGNGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ LK G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DGIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INFDQKSLKNFLHK 317 IN SL K Sbjct: 321 INPILNSLNEEQPK 334 >gi|329298601|ref|ZP_08255937.1| flagellar motor switch protein FliM [Plautia stali symbiont] Length = 269 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 81/254 (31%), Gaps = 4/254 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + DIS + + + + + L + S +LV ++NL G Sbjct: 7 LRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLQPLRGTALVVFSPSLVFIAVDNLFG 66 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ +R + + ++ N Sbjct: 67 GDGRFPTKVEGREFTHTEQRVIRRMLKLALEGYSDAWKAIYPLEVEYVR-SEMQVKFINI 125 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFA 232 N+ V + I N+ F + IP + L+ S + D Sbjct: 126 TTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLV 185 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + + L ++ LK+G V+P I +G + + + G + Sbjct: 186 KQVQHSELELIAHFAETSLRLSRILQLKLGDVLPIEKP--DRIIAHVDGVPVLTSQYGTL 243 Query: 293 GKNYTIRITDRINF 306 Y +R+ +IN Sbjct: 244 NGQYALRVEHQINP 257 >gi|283785715|ref|YP_003365580.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168] gi|282949169|emb|CBG88777.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168] Length = 334 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 98/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + + ++ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G V Y +R+ IN Sbjct: 267 DIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 323 >gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus HD100] Length = 333 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 89/269 (33%), Gaps = 4/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + I+ TS + KF I++ S + + Sbjct: 67 EKFMRAFRVSLSSALRKIASITLTSTEFLKFGEFINTLPMPTCMSVLRFGNLRGSALFVI 126 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L L+++ G + ++ + + +E + ++ + + ++ ++ + Sbjct: 127 ESKLAYALVDSFFGGADRPYTKIDGKDFTPIELSIVQKVVGLAINDMEMAWASIEKIGCS 186 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + V ++ +EN + ++IP T+ +K L + Sbjct: 187 FVRTEVNPQFVGIV--PPTDVVIASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQV 244 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + + + ++ I + + LKD++ LK+G VIP + Sbjct: 245 ETDQTDKKLWTAIIQEQLLETDMEIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDV 304 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306 + G + G +++T + Sbjct: 305 AVEGVRKFKGYYGIHHGTVAVQVTRPVEK 333 >gi|295098287|emb|CBK87377.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 334 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 100/310 (32%), Gaps = 10/310 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 N P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 NIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DISMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINPI 324 Query: 308 QKSLKNFLHK 317 SL K Sbjct: 325 LNSLNEEQPK 334 >gi|294636877|ref|ZP_06715207.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685] gi|291089907|gb|EFE22468.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685] Length = 337 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 88/268 (32%), Gaps = 4/268 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L + Sbjct: 61 ERFARQFRMGLFNLLRRSPDITVGAVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++NL G ++ R + E+++ +R + + Sbjct: 121 EPSLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLEVE 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +I N N+ V T + + ++ F + IP + + ++ + Sbjct: 181 YVR-SEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLE 239 Query: 220 SENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + Q + D +++ + + L DV+ L++G V+P I + Sbjct: 240 NSKQEDQHWRDTLSKQVQHSELELVANFVDIPLRLSDVLKLQVGDVLPIDRP--DRLIAN 297 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + +C+ G Y +R+ IN Sbjct: 298 VDGVPVLTCQYGCYHGQYALRVEKMINP 325 >gi|16129892|ref|NP_416455.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108777|ref|AP_002557.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081589|ref|YP_001730909.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901150|ref|YP_002926946.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773106|ref|YP_003035937.1| flagellar motor switch protein FliM [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120345|sp|P06974|FLIM_ECOLI RecName: Full=Flagellar motor switch protein FliM gi|145981|gb|AAA23786.1| FlaAII protein [Escherichia coli] gi|1736611|dbj|BAA15770.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889424|gb|ACB03131.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861113|gb|ACR63111.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324150|gb|ACT28752.1| flagellar motor switch protein FliM [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448942|gb|ACX39364.1| flagellar motor switch protein FliM [Escherichia coli DH1] gi|315136582|dbj|BAJ43741.1| flagellar motor switch protein FliM [Escherichia coli DH1] Length = 334 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 10/303 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L G V+P I +G + + + G + Y +RI Sbjct: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320 Query: 304 INF 306 IN Sbjct: 321 INP 323 >gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519] gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii] Length = 332 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 108/289 (37%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 KT+ I + + +L + +DV S + + +S + S Sbjct: 53 KTLHMIHENFSRILNTYLSGYLRSITQIDV----ISVEELSYYEFNNSISNPALISVIDF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 SN L T+++ +LG + + + +R + +E + + +A +S +L + Sbjct: 109 MPLPGQIIFEMSNRLAFTMIDRILGGNGKY--ESESRPFTEIETTILNKLMANVSRLLIE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L+ + + SNE V I + + ++ + +P +L+ Sbjct: 167 PWENVIELDPELDKIETNSQFAQIVS--SNETVALITLRANVGDIEGLMNICMPH-IVLE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L +LS++ ++L + + + N++I+ + T+++ + L+ G V Sbjct: 224 PILPNLSTKFWFSTVKKELNEDDKGYLETRVKRANIDINAVVGDTYITVEEFIYLQEGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + L GK Y G + N +IT + + Sbjct: 284 IKLSRKIDEDLELHVEGKTKYLGRPGTLKNNMAFKITKVVEKGDEDYDE 332 >gi|308187297|ref|YP_003931428.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1] gi|308057807|gb|ADO09979.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1] Length = 335 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + I + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMTLFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + ++ N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + L+ S + D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ LK G V+P E I + + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKPE--RIIAHVDSVPVLTSQYGTMNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|312172110|emb|CBX80367.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC BAA-2158] Length = 336 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALESYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905] gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905] Length = 331 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V I+ S F + S + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ ++L+ L+G S + + N L+ +E K+ + L + Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L + + + NE V I++N I + + IP +L+ Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +LS Q ++ S + + Q + + + L T++D +T+++G V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329 >gi|304398862|ref|ZP_07380732.1| flagellar motor switch protein FliM [Pantoea sp. aB] gi|304353566|gb|EFM17943.1| flagellar motor switch protein FliM [Pantoea sp. aB] Length = 335 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 10/306 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 + + P P R+ + I + + + + DIS Sbjct: 27 KQNGPEGDIRPYDPNTQRRVVRERLQALEI------INERFARSFRMALFNLLRRSPDIS 80 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + + L + S +LV ++NL G + Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ +R + + ++ N N+ V Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIV 199 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240 + I N+ F + IP + L+ S + D ++ + Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L ++ LK G V+P E I + + + + G + Y +R+ Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKPE--RIIAHVDSVPVLTSQYGTMNGQYALRV 317 Query: 301 TDRINF 306 IN Sbjct: 318 EHLINP 323 >gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch [Pelobacter carbinolicus DSM 2380] Length = 331 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 97/262 (37%), Gaps = 5/262 (1%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 +M + + + Q ++ + L L LL Sbjct: 72 SLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVFIFKEKLAFYLL 131 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 E+LLG + + L RSL+ +E + + TIA LN+ + ++ +L Sbjct: 132 EHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIESSLVKIESSTR 191 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSED 226 L + V + +T N+ VL++P +L + S SE+Q Sbjct: 192 LINIV--PGDASVLAAHFVVTGNNLEDEIVLVLPMA-MLDPLKEKMREGSAVFSESQDRP 248 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 ++ Q++V++ ++ T++D++ K+G ++ + + A G+ + Sbjct: 249 WQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQVRAAGQPKFQ 308 Query: 287 CELGRVGKNYTIRITDRINFDQ 308 G +RI+ RIN + Sbjct: 309 AIAGTHQGKKAVRISGRINRNN 330 >gi|261344127|ref|ZP_05971771.1| flagellar motor switch protein FliM [Providencia rustigianii DSM 4541] gi|282567719|gb|EFB73254.1| flagellar motor switch protein FliM [Providencia rustigianii DSM 4541] Length = 335 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + + Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGAIKVEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++NL G + + + E+++ R + + Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALNAYRDAWRPIADVEVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 +I N N+ V T + I N F + IP + L+ LI+ Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINP-PT 236 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++E + + + + + + + ++ L+ G V+P I+ Sbjct: 237 EQGHQENEAWVTNLVTQVKRSELELVANLVEIPLRISSLLQLQKGDVLPIDKP--DRLIV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + +G + + + G Y +R+ IN +L Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330 >gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202] gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60] Length = 337 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 96/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + + Sbjct: 36 DVRPYDPTTQRRVVRERLQALEI------VNERFARQFRMGLFNLLRRSPDITVGAVRIQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 90 PYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + +I N N+ V T + Sbjct: 150 HTEQRVIQRMLRLALDAYRDAWGAIFKLDVEYVR-SEIQVKFTNITTSPNDIVVTTPFTV 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRIN 247 + ++ F + IP + + ++ ++ Q + D +++ + + Sbjct: 209 EVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVANFV 268 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L DV+ L+IG V+P + + +G + +C+ G Y +R+ IN Sbjct: 269 DVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEKMINP 325 >gi|292487985|ref|YP_003530862.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|292899205|ref|YP_003538574.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199053|emb|CBJ46164.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553409|emb|CBA20454.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] Length = 336 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM 2876] Length = 329 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 98/284 (34%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP + V + + ++ +S ++ + Sbjct: 54 RTLEIIFEHYGRLLSTNLPAYLRM----PVQVEVKTSEAVIYSEFSNALSNPVLLGVVDF 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + ++NL +++ LLG + + P R S +E + +R +L + Sbjct: 110 EPLDGNIVLEIASNLGFVIIDRLLGGAGK--PLSKGRDFSEIELSIIERIFNICVNLLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P +E + + +E + + +++ + + + +P L Sbjct: 168 PWQNVLSIVPRMERIETNSQFAQIIS--PSEMIAIVTISIKLGDTEGLMNVCLPYSVLEP 225 Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + S Q D D + + + + + ++ D + L +G +I Sbjct: 226 VMDKLNTKYWFSTMQHRDVKTYEDAISSLISKAQIPVKAVLGNSTISVNDFLNLNVGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++ G NY +RIT+ + +++ Sbjct: 286 RLDRKVDEELDVYVGNIHKFTALPGSADDNYAVRITNVLRGEEE 329 >gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR] gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR] Length = 333 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 108/284 (38%), Gaps = 13/284 (4%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 T++ I + L FL + V ++ S + + I S + + + Sbjct: 56 TLQAIHENFARLLATFLSAHLRTV----VTMNVHSVEQITYDEFIRSLPNPTLLNIFMME 111 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + N + + N+ T+L+ L G + ++ R L+ +E+ + ++ I + +L + Sbjct: 112 PLAGNAILEVNPNVTFTILDRLFGGPGQAPEKM--RGLTDIERTVIEKVIIRCLQILKEA 169 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 P LE + + E V I+++ TI + L IP +L+ Sbjct: 170 WENIIVFDPKLEIIETNPMFTQIVS--PTEMVVLISIHATIGDNEGIMNLCIPF-IVLEP 226 Query: 210 TLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L++ ++ + + I R+ + + + + L +++ L+ G VI Sbjct: 227 IISKLTAHFWFAGTAKTVTAEHIQNTQRRLEKAKITLSAVLGETTIKLGELLELQPGDVI 286 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +R + ++ + G VG ++IT + + Sbjct: 287 QLDNRTTDELKILVGDRKKFYGRPGTVGSRLAVQITRLVKEGDE 330 >gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda] Length = 337 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 20/304 (6%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTS 64 + P P ++ + + +L + + + F+ + DI+ + Sbjct: 36 DVRPYDP---------TTQRRVVRERLQAL-EIVNERFARQFRMGLFNLVRRSPDITVGA 85 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + +LV ++NL G ++ Sbjct: 86 VRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDG 145 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + I N N+ V T Sbjct: 146 REFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVKYVR-SKIQVKFTNITTSPNDIVVTT 204 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + + ++ F + IP + L+ L++ S+ + + D +++ + + Sbjct: 205 PFTVEVGALSGEFNICIPFSMIGTLRELLVNP-PLENSKQEDQHWRDTLSKQVQHSELEL 263 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L DV+ L+IG V+P + + +G + +C+ G Y +R+ Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321 Query: 303 RINF 306 IN Sbjct: 322 MINP 325 >gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB] Length = 333 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 104/289 (35%), Gaps = 10/289 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E + +++ L + ++ V ++ S KF + + Sbjct: 49 GRMPTLEMTNEKFARMFRTTLSSMLRKV----VAVNSMSVDMIKFGEFLKTLPVPTSLHI 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + N + ++ TL++ L G + + + ++ R + +E L K+ I + Sbjct: 105 FRMEPLRGNAIFVMESKVIFTLVDVLFGGAGKELFKVEGREFTAIETNLIKKVILSALSD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + T + + + + V ++ + +E + L IP T Sbjct: 165 LEKAWKTMHDIRVIYQRSEINPQFAQIV--PPTDLVFVVDFEIEVEYITGILKLCIPYST 222 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQ 263 + + L + +SE D + + + ++D I L + KDVV LK G Sbjct: 223 V-EPIREKLQAGFQSEQLEVDKVWMKRFRDNLMLAHLDILIELGSTLISAKDVVNLKPGD 281 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 VI + G + G N +RI++ I D++ + Sbjct: 282 VITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISE-IVQDKEVMD 329 >gi|238785486|ref|ZP_04629469.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] gi|238713588|gb|EEQ05617.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] Length = 334 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 41/303 (13%), Positives = 98/303 (32%), Gaps = 12/303 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 + P P R+ + +E I+ ++ L + + DI+ Sbjct: 30 TETDVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPI 83 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + + L + +LV ++NL G ++ R Sbjct: 84 KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ R + + + +I N N+ V T Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTP 202 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNID 243 ++ I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 203 FHVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELV 261 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319 Query: 304 INF 306 IN Sbjct: 320 INP 322 >gi|310767337|gb|ADP12287.1| flagellar motor switch protein [Erwinia sp. Ejp617] Length = 336 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus WK1] Length = 335 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 111/284 (39%), Gaps = 13/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ ++ + L F F ++ V IS S + I S + + + + Sbjct: 57 RSLTRMHENFARLLTTF----FSAQLRTYVQISVASADQLPYEEFIRSIPKMTILTVFEV 112 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + N+ +L+ +LG ++ ++ N L+ +E K+ + + L + Sbjct: 113 PPLDGRVLLEVNPNIAYAMLDRVLGGRGVSLNKIEN--LTEIETKIMSNLFEKAFSNLRE 170 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + P L DF + + NE V I++N I + + + IP +L+ Sbjct: 171 AWESVADIDPMLTDFEVNPQFLQMVS--PNETVVVISLNTQIGDTSGMINICIPH-VVLE 227 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + + + + ++ Q V + + ++++ + L +G V Sbjct: 228 PIIPKLSVHYWMQTQKKAREPEEVATLQKRLKQTKVPMIAELGTSTISIQEFLQLSVGDV 287 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I + ++ + + G++ K I+I D I + Sbjct: 288 IQLDQTVRDPLVIKVGDVPKFIGQPGKMNKRLAIQILDVIKGED 331 >gi|296103565|ref|YP_003613711.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058024|gb|ADF62762.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 334 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 40/299 (13%), Positives = 97/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALESYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ + R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVASFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLINP 323 >gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC 27750] Length = 327 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 103/285 (36%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + + + +S ++ + + Sbjct: 52 RTLEIIFEHFGRLLATNLPAYLRKS----VSVDVVNSEVVIYSEFSNALSNPVLLGVVGM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N + ++NL +++ LLG + + R S +E + +R ++ + Sbjct: 108 QPLSGNIIMEMASNLGFAIVDRLLGGAGNS--LDKERDFSEIELSILERIFTVCVNLMQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + +P LE + + + TIN+ + +V + +P T L+ Sbjct: 166 PWENVVKVNPRLERIETNSQFAQIISPSETIAIVTINLKI--GDVEGLVNICLPFAT-LE 222 Query: 209 TTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + L+++ N E D + + + + K ++ D L+IG + Sbjct: 223 PVMDKLNTKYWFSNMQEKDTNTYEDAIETVIDKAMIPVKAVLGTSKISVSDFANLQIGDI 282 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + + + G Y +R+T+ I + + Sbjct: 283 IRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVTEVIRKESE 327 >gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 332 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 105/289 (36%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + +L F ++ V I+ + + I S + + + Sbjct: 53 RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N+ +L++LLG + ++ +L+ +E + +R ++ L + Sbjct: 109 EPLEGRMVMEVHPNVAYAMLDHLLGGVGVSPSKIN--ALTEIETIVMERIFSKAFDSLQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T + P LE + + NE + I+++ I + L IP +++ Sbjct: 167 AWKTVVDLQPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVIE 223 Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS + +Q + + ++ + Q + + T+ + + L +G V Sbjct: 224 PIMPRLSVHSWFVSQKKSRAPEEVEALQFRLNQAKLPFVAELGSSHITVHEFLNLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + K Y+ G V ++I + ++ ++ Sbjct: 284 ITLQKPVNEPLKIRIGDKYKYTGSPGTVRGKMAVQINEPVSEGEEEYDE 332 >gi|92114085|ref|YP_574013.1| flagellar motor switch protein FliM [Chromohalobacter salexigens DSM 3043] gi|91797175|gb|ABE59314.1| flagellar motor switch protein FliM [Chromohalobacter salexigens DSM 3043] Length = 338 Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 P P R+ + I + + + M DI+ S + Sbjct: 36 KVRPFDPAKQHRIIRERLHALDI------INERFARQFRVALFNLMRRSADITVESVRYQ 89 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +S + + ++ + + +LV +++NL G + + R + Sbjct: 90 SYSEFSRNLPVPTNLNLITMKPLRGSALVVFPPSLVFMVVDNLFGGDGRFLTKSEGREFT 149 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + ++ + ++ N NE V ++ Sbjct: 150 RTEQRIIHRMLKMALEGYSESWKSVYPLDIEYTR-SELQVKFANITNSPNEIVVNSTFHV 208 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + N++S F + IP + I S + ++ + A + +V + Sbjct: 209 EVGNLSSEFNICIPYSMIEPIRDILASPLHDTHPDEEQQWEARMAHEIRHSSVELTADFV 268 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L+DV L +G +IP E +S +G + +C+ G +R+ I Sbjct: 269 DIPLRLRDVTQLSVGDIIPIELPE--AVNVSVDGIPVMTCDYGSQKSQRALRVRHLIEH 325 >gi|238794009|ref|ZP_04637627.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC 29909] gi|238726641|gb|EEQ18177.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC 29909] Length = 334 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 99/300 (33%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T ++ Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|213053037|ref|ZP_03345915.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 320 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 10/295 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L ++ LK G V+P I +G + + + G V Y +R+ Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEH 319 >gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2] gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2] Length = 356 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 112/326 (34%), Gaps = 13/326 (3%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKIS-------SSLGYLYKKFLPKIFKEK 53 + + I + P +L + L D K ++S ++ + L Sbjct: 17 VEEEDISPDELDNIPDILEQRQVTLYDFKRPNRVSKEQLRSIRAIHDKMVRNLASDISSL 76 Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 M V+I S + + S F+ SL I + ++V +++ LLG Sbjct: 77 MRSIVEIHLHSVDQMTYGEFLMSLPSPTSFNVFSLKPLDGKGVIELNPSIVFPMIDRLLG 136 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 +P R + +E L + + I+ + + + E P +E + + Sbjct: 137 GPG--LPFENTREFTDIELNLLDQILRTITQNMKEAWAPIMEMYPVIEAKESSPNVVQIV 194 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPF 231 NE V I M + I + + P T+ L L S + + Sbjct: 195 --AQNEIVVMIVMEIVIGQTSGMMNICYPVITIESLLPKLASRDLMLSETSSRKSRNKEL 252 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 V ++ + T+++++ L +G +I ++ +G+E + + G Sbjct: 253 RALLGGAKVELEAVLGYANLTMQEILDLVVGDIIKLNRPADDTVVVKVDGREKFIADFGI 312 Query: 292 VGKNYTIRITDRINFDQKSLKNFLHK 317 I+I + + + +K L K Sbjct: 313 KRFRRAIKIREILKTEHDEVKEILSK 338 >gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis PHE/MN1-00] gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis PHE/MN1-00] Length = 325 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N I Sbjct: 60 RFARLCTNALSNAIRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMDPLRGNAIIVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN+ G + P++ R + +E+ + R I + + + L Sbjct: 120 SRLVFALVENVFGGIG-SQPKIEGREFTRIEQVIVDRIIKIALDNMEESWRPVHDVKLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V IN + +++ S + IP T ++ L + ++ Sbjct: 179 IRSEINPQFAAIV--PPSDVVIVINFEVELDSSIGSMTICIPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + V + R+ + T ++ LKIG V+ + + Sbjct: 236 ERLEIDHAWVGRLKERLLETPVELKVRMGNTQITGNQLLRLKIGDVLVLDTDVEDLLECT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G Y G V N +I Sbjct: 296 VAGVTKYWGIAGTVKSNKAYQI 317 >gi|238788326|ref|ZP_04632120.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC 33641] gi|238723572|gb|EEQ15218.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T ++ Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|238798578|ref|ZP_04642055.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] gi|238717598|gb|EEQ09437.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] Length = 334 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 98/300 (32%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T ++ Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|317048606|ref|YP_004116254.1| flagellar motor switch protein FliM [Pantoea sp. At-9b] gi|316950223|gb|ADU69698.1| flagellar motor switch protein FliM [Pantoea sp. At-9b] Length = 335 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 89/299 (29%), Gaps = 10/299 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DIS + + Sbjct: 34 DIRPYDPNTQRRVVRERLQALEI------INERFARHFRMALFNLLRRSPDISVGAIKIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ +R + + ++ N N+ V + Sbjct: 148 HTEQRVIRRMLKLALEGYSDAWKAIYPLDVEYVR-SEMQVKFTNITTSPNDIVVNTPFQV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + IP + L+ S + D ++ + + Sbjct: 207 EIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSELELIAHFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G + Y +R+ IN Sbjct: 267 DVSLRLSRILQLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 323 >gi|238751773|ref|ZP_04613261.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380] gi|238710044|gb|EEQ02274.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380] Length = 334 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T ++ Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFHV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGTLSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT 98-5491] Length = 352 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 106/287 (36%), Gaps = 8/287 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + L M V+I S + + S F+ S+ Sbjct: 55 RAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 114 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ +++ LLG + P R S +E L + Q+ L + + Sbjct: 115 GTGVLEINPSIAFPMIDRLLGGKGD--PYESTREFSDIELNLLDTILRQMMQNLKEAWAP 172 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E PN++ + + NE V + M + I + + L P + L++ L Sbjct: 173 ITEIFPNVDVKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 229 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + VN+ + K TL++++ L++G ++ Sbjct: 230 RLASRDIMLSETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIMRLDR 289 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 I++ +G+E + +G TI I + I ++ +K L Sbjct: 290 PADDTVIINVDGREKFLASIGLHRYRKTIEIKEMIKTEKDQVKEILE 336 >gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC 43243] Length = 327 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + + + +S ++ + ++ Sbjct: 52 RTLEIIFEHFGRLLATNLPGYLRK----TVSVDVVNSEVVIYSEFSNALSNPVLLGVVTM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + ++NL +++ LLG S T R S +E + +R +L + Sbjct: 108 PPLKGNIIMEMASNLGYAIIDRLLGGSGNT--MDKARDFSEIELTILERIFTICVNLLQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ++SP LE + + +E + + +++ I V + +P TL Sbjct: 166 PWQNVVQTSPRLERIETNSQFAQIIS--PSETIAIVTLSIKIGEVEGLMNICLPFVTLEP 223 Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + S Q +D D + + + + + ++ D V L++G +I Sbjct: 224 VMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRAQIPMKAVLGHSRISVGDFVNLQLGDII 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + ++ G Y IRIT+ I + + Sbjct: 284 RLDRKVDDELEVYVGNIKKFAALPGYSEDKYAIRITEVIKEESE 327 >gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans Nor1] gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans Nor1] Length = 334 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 106/286 (37%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ + + L +L + V I+ S + I S V S + Sbjct: 55 RTLYMLHENFARLINTYLSAHLRTL----VHINVASVDQLTYEEFIRSLPNPSVISIFQM 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+V +++ L G + + R L+ +E+ + +R +A++ + Sbjct: 111 PPLKGNVILELNPNIVFAVIDRLFGGTGVAPVKP--RPLTDIEEAIIRRVLAKMLEGFQE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P + + ++ V I + I + IP +L+ Sbjct: 169 AWKQVVAVEPRIGAIETNPQFAQIV--PPSDMVVIITLQAKIGQAEGLINVCIPY-LVLE 225 Query: 209 TTLISLS-----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + L+ + ++ +++ I RK + +V + + T++D++ L +G Sbjct: 226 PIMSKLTTTFWVALGTTKQVTQENITTLQRKLQRTSVPVIVELGRATVTVQDLLDLAVGD 285 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ R + +E + C+ G VG ++IT+ + + Sbjct: 286 VLQLESRFDGELSVIIGQREKFKCKPGLVGGKVAVQITEVMLKGDE 331 >gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146] gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella ictaluri 93-146] Length = 337 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 88/268 (32%), Gaps = 4/268 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L + Sbjct: 61 ERFARQFRMGLFNLLRRSPDITVGAVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVF 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++NL G ++ R + E+++ + + S + Sbjct: 121 EPSLVFMAVDNLFGGDGRFPTKVDGREFTHTEQRVIQSMLRLALDAYRDAWSAIFKLDIE 180 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +I N N+ V T + + ++ F + IP + + ++ + Sbjct: 181 YVR-SEIQVKFTNITTSPNDIVVTTPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLE 239 Query: 220 SENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + Q + D +++ + + L DV+ L+IG V+P + + Sbjct: 240 NSKQEDQHWRDTLSKQVQHSELELVADFVDIPLRLSDVLKLQIGDVLPIDRP--DRLVAN 297 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 +G + +C+ G Y +R+ IN Sbjct: 298 VDGVPVLTCQYGCYHGQYALRVEKMINP 325 >gi|270262388|ref|ZP_06190659.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13] gi|270043072|gb|EFA16165.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13] Length = 333 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 94/304 (30%), Gaps = 12/304 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + I + + + + DI+ Sbjct: 29 SNESEVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L+ + +LV ++NL G ++ Sbjct: 83 IRIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + S + + ++ N N+ V T Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVR-AEMQVKFTNITTSPNDIVVTT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNI 242 + I ++ F + IP +++ L+ S + + ++ + + Sbjct: 202 PFQVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSQWRETLVKQVQHSELEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L ++ L+ G V+P E I +G + + + G + Y +R+ Sbjct: 261 IANFVDIPMRLSKILKLQPGDVLPIDKPE--RLIAHVDGVPVLTSQYGTLNGQYALRVEH 318 Query: 303 RINF 306 IN Sbjct: 319 LINP 322 >gi|162147486|ref|YP_001601947.1| flagellar motor switch protein FliM [Gluconacetobacter diazotrophicus PAl 5] gi|209545593|ref|YP_002277822.1| flagellar motor switch protein FliM [Gluconacetobacter diazotrophicus PAl 5] gi|161786063|emb|CAP55645.1| putative flagellar motor switch protein fliM [Gluconacetobacter diazotrophicus PAl 5] gi|209533270|gb|ACI53207.1| flagellar motor switch protein FliM [Gluconacetobacter diazotrophicus PAl 5] Length = 395 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 99/269 (36%), Gaps = 8/269 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + + +V+I+ +S F +++ + +F+ W + I Sbjct: 104 RLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAVPSSSLFAVFKAVQWENYGLIVID 163 Query: 101 NNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++++ L+G + R + +E+ L ++ + L+ + Sbjct: 164 SALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIEKLVTLTLNDLSTAFNPVCTIDLT 223 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E ++ V +++ +E+ + S LIIP T L+ LS Q Sbjct: 224 FERLEVSARFAAI--ARASNAVVMTKLHIDMEDRSGSLDLIIPYVT-LEPVRDQLSQQFM 280 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC--A 275 E D + + ++ + K L +V+ L+ G +I F H+ T Sbjct: 281 GERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSEVLGLRPGMLISFPHQNGTPIHV 340 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 L ++ LG++ ++I R+ Sbjct: 341 RLQCGQTPLFEGRLGKLQDKAAVKIEKRL 369 >gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC 51599] gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC 51599] Length = 349 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 5/263 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M + +I+++ G++S + + + + + + + Sbjct: 80 ERFARSLGLAMFTFMQRNPEITHSDPVVGRYSDFLGTIQLPASINIMQTRPLAGSALLVL 139 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV T+++ + G + + + R S E++L K+ I S+ + + Sbjct: 140 DGQLVSTIVDLMFGGTGRPMRKSEGREFSMTEQRLIKKLIDLSSSEYGRAWESIHPMELV 199 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + E V + + + + + IP L SS N Sbjct: 200 FTRSES--QPQFANIAIPAEMVVSTTFTLDFNGQSGTIQICIPYSVLEPIRDTLSSSLNT 257 Query: 220 -SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S + + +++ V + + TL +++ L+ G VI A+L Sbjct: 258 NSGEEKRSWLGQMSKEIKPAGVELVAELTTATLTLGELMKLRTGDVIEIETGP--GAMLK 315 Query: 279 ANGKEIYSCELGRVGKNYTIRIT 301 I++ G Y +RI Sbjct: 316 IGQVPIFNGRYGEHNGRYAVRID 338 >gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132] gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans ND132] Length = 325 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 93/262 (35%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VDI+ S KF + S S + N + Sbjct: 60 RFARLCTNALANTMRKRVDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G + + P++ R + +E+ + +R + A + + E + Sbjct: 120 SRLVFALVENFFGGAG-SQPKVEGRDFTPIEQAIVERVVKIALANMEESWKPVHEVHVEM 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V + + +EN S ++ +P T+ + L + +S Sbjct: 179 VRTEVNPQFAAIV--PPSDVVIVVTFEVELENAIGSLIVCLPYATM-EPIRSKLHASFQS 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I+ F + + V + R+ + + ++ L+ G +I E Sbjct: 236 ERLEVDHVWINRFKERLMETPVEMVVRLGRTSISGRQLLYLQEGDIILLDTDEDELLEAE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + GRV N + ++ Sbjct: 296 VEGVRKFQGLPGRVKGNKSFKV 317 >gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 329 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 109/286 (38%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQIIFENYSRIVTTFLSGYLRTV----VQMDVISVEQLTYYEFSNSLSNPVVMGIVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S + +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 APLKGSIVFEMSPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P LE + + NE V + ++M + V + +P +++ Sbjct: 167 AWENIVDLHPKLEKIETNPQFTQIVS--PNETVALVTIDMKVGEVEGMVNICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + RK + V I + K T+++ + L++G V Sbjct: 224 PIMPRLSTKYWFSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 I R+ + K + GR I++T R+ + +S Sbjct: 284 IRLDRRKNQEIEVFVGDKLKFYGVPGRKEGRVAIKVT-RVEKEDES 328 >gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus C3-41] gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41] Length = 331 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V I+ S F + S + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ ++L+ ++G S + + N L+ +E K+ + L + Sbjct: 110 PPLDGNILMEINPNIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L + + + NE V I++N I + + IP +L+ Sbjct: 168 AWENVAEIDPILVELEVNPQFLQMIS--PNETVVVISLNTIIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +LS Q ++ S + + Q + + + L T++D +T++IG V Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + +L ++ + G+ GK I+I D + + Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329 >gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC 39073] Length = 323 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 108/281 (38%), Gaps = 14/281 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ I + G L FL + + + S + + I S + + S+ Sbjct: 52 RTLYMIHENYGRLVANFLSAYLRAS----IQVKIVSVEQMTYEDFILSLPTPTLMNVFSM 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N + +++ L G E + + NR L+ +E + +R +++ L+ Sbjct: 108 EPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLSY 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q +P LE+ + + NE V I M T+ L +P LL+ Sbjct: 166 SWSDIQNITPKLENMETNPQFTQAIS--PNETVAVITMGTTVGKYEGLLNLCLPY-MLLE 222 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ---LNVNID--TRINLKKTTLKDVVTLKIGQ 263 + LS+ + E P R + V ++ I + ++D + L++G Sbjct: 223 PVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 VI L +G + + G V K +++T+ + Sbjct: 283 VITLEKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323 >gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM 16841] Length = 326 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 111/286 (38%), Gaps = 17/286 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + + ++ +S ++ + ++ Sbjct: 52 RTLEIIFEHYGRLLSTNLPVYLRK----TVQVEVMNSEAVTYSEFTNALSNPVLLGLVNV 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S S + I ++NL +++ +LG P R S +E + +R ++L + Sbjct: 108 SPLSGSIIIELADNLGYAIVDRMLGGLGT--PLDKPRDFSEIELLILERIYNVCVSLLPE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 S+ E SP LE + + E + + +++ I +V + +P TL Sbjct: 166 PWSSVCEISPRLERIETNSQFAQIIS--PTEMIALVTLHIKIGDVEGLMNICLPYLTLES 223 Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L T + Q + Q D I+ + + + + ++ D V L++G Sbjct: 224 VMDKLNTKFWYSNLQEHDDKQYTDAIEAL---ISKAKIPVKAVLGNSTISVDDFVNLQVG 280 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +I + + ++ G VG NY +R+T + +Q Sbjct: 281 DIIRLDSGVNQDLNIFVGNIKKFTALPGAVGDNYAVRVTSVVREEQ 326 >gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus thermoglucosidasius C56-YS93] gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1] gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus thermoglucosidasius C56-YS93] gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1] Length = 334 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 107/279 (38%), Gaps = 13/279 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + I S + + + Sbjct: 55 RSLTRIHENFARLLTTF----FAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFEV 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + N+ +L+ ++G ++ ++ N L+ +E ++ + + L Sbjct: 111 PPLNGHILMEVNPNIAYAMLDRVMGGKGTSVNKIDN--LTEIETRIISNLFDKAFSNLRD 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + E P DF + + N+ V I++N I + + IP +L+ Sbjct: 169 AWESVAEIDPVFTDFEVNPQFLQMIS--PNDTVVVISLNTQIGETSGMMNICIPY-VVLE 225 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + S + + R+ + I + T++D + L++G V Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEALERRIRFAKLPIIAELGTATITIQDFLQLEVGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I + ++ ++ + G+ K ++I D Sbjct: 286 IELDQSIQQPLLIKVGDIPKFTGQPGKRNKRLAVQILDT 324 >gi|238764404|ref|ZP_04625354.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC 33638] gi|238697430|gb|EEP90197.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC 33638] Length = 334 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 98/300 (32%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T + Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFQV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P E I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKPE--RLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira defluvii] gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira defluvii] Length = 323 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 9/279 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E I+ + +EK ++ S Q KF I F+ Sbjct: 49 GRMPTMEMINDRFTRQQSISWSAVLREK----IEFSVLGTQIMKFGDFIQKVPVPSSFNL 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 ++ N LV +++ G +T + R +T++ +L K+ + Q A Sbjct: 105 FAMEPMRGNGLFVMDAMLVYLIVDFFFGGKVQTHVKPEGREFTTIQLRLIKKLVQQALAD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 L + + + ++E V + + + + +++ + P Sbjct: 165 LEKAWQAVMPV--KIGYLRSESNPQFAMVVTTSEIVVVVTLQVHLGDISREMFIAYPYS- 221 Query: 206 LLKTTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +L+ L S ++N Q F + +V + ++ + ++D++ G Sbjct: 222 MLEPIKEKLYSGLFADNVEQDSSWGSRFKDSLQECDVALTVQLGTARINVQDLLNFNPGD 281 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 V+ + G + + G N+ R+T Sbjct: 282 VLMLDQHPGDPMLCLVEGDPKFQGQPGIFKGNHACRVTK 320 >gi|268589967|ref|ZP_06124188.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131] gi|291314684|gb|EFE55137.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131] Length = 335 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 83/276 (30%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++NL G + + + E+++ R + + Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRQEGKEFTNTEQRIINRMLKLALGAYRDAWKPIADIEVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 +I N N+ V T + I N F + IP + L+ LI+ Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINPPM- 236 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++E + + + + + + ++ L+ G VIP I+ Sbjct: 237 EQGHQENETWVTNLVTQVKRSELELVANFVDIPMRISRLLQLQKGDVIPIEKP--DRLIV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + +G + + + G Y +R+ IN +L Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330 >gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM 3645] Length = 376 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 105/300 (35%), Gaps = 12/300 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 + +P R+ + ++ + G + L + + V++ TS Sbjct: 55 RPREKITPYDFKRPERV--GKEQMRALQSMHEGFGRNFGAALSGLLRNI----VEVKLTS 108 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 +S I S + F+ + S N + + +++ +++ LLG E+ P Sbjct: 109 VDQLTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGGGKESSPV-SR 167 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R L+ +E L R L + ++ L + NE + I Sbjct: 168 RPLTEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVESNPQLVQIV--PPNEVIVLI 225 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVN 241 + +TI +V L IP ++ + + + SE+ + + +V Sbjct: 226 SFELTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSEESRQALSTQIDGASVE 285 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + K T +D++ L++G VI + +S NG + G I++ Sbjct: 286 VGVTLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNGVTKFLAFPGAFKGRKAIQVD 345 >gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis Aspo-2] Length = 325 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VDI+ S KF + S S + N + Sbjct: 60 RFARLCTNALANTMRKRVDINPISIDMSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G + + P++ R + +E+ + +R + A + + E L Sbjct: 120 SRLVFALVENFFGGAG-SQPKVEGRDFTPIEQAIVERVVKIALANMEESWKPVHEVHVEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V + + +EN S ++ +P T+ + L + +S Sbjct: 179 VRTEVNPQFAAIV--PPSDVVIVVTFEVELENAIGSLIVCLPYATM-EPIRSKLHASFQS 235 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILS 278 E D + K + ++ I + +TT+ + ++ L+ G +I E Sbjct: 236 ERLEVDHVWINRFKERLMETPVEMVIRMGRTTISGRQLLYLQEGDIILLDTDEDELLEAE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + GRV N + ++ Sbjct: 296 VEGVRKFQGLPGRVKGNKSFQV 317 >gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046] Length = 331 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 106/285 (37%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V I+ S F + S + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ ++L+ L+G + + + N L+ +E K+ + L + Sbjct: 110 PPLDGNILMEINPNIAYSMLDRLMGGAGGSHSNVDN--LTEIETKIMTNLFERSFDNLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L + + + NE V I+ N I + IP +L+ Sbjct: 168 AWENVAEIDPMLVELEVNPQFLQMIS--PNETVVVISFNTIIGETTGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +LS Q ++ S + + Q + I + T++D +T+ +G V Sbjct: 225 PIVPNLSVRYWMQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 IP + + L ++ + G++ ++I D + + Sbjct: 285 IPLKQKIENPLTLKVGSLPKFTVQPGKLNNKMAVQIIDPLKGGDE 329 >gi|293395596|ref|ZP_06639879.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582] gi|291421915|gb|EFE95161.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582] Length = 334 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGPIRIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L+ + +LV ++NL G ++ R + Sbjct: 87 PYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ KR + S + ++ N N+ V T + Sbjct: 147 PTEQRVIKRMLRLALDAYGDAWSAIYQIDVEYVR-AEMQVKFTNITTSPNDIVVTTPFQV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L+ S + + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSRWRETLVKQVQHSELELIANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+ L+ G V+P E I +G + + + G + Y +R+ IN Sbjct: 265 VDIPMRLSKVLKLQPGDVLPIDKPE--RLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032] gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061] gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032] gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061] Length = 332 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 95/265 (35%), Gaps = 9/265 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ + I+ +S + I S + + +S + + Sbjct: 63 FARLLTTHFSAQLRSYIQITVSSVDQVPYEEFIRSIPNMTLLNLFYVSPLEGRIMLEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + +++ L+G + + SL+ +E K+ + + + P + Sbjct: 123 TIGYAMMDRLMGGIGISHNKTE--SLTEIETKIISNMFEGALENYREAWQSITDIEPEMA 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217 DF + NE V I++N I V+ L IP +L+ + LS Q Sbjct: 181 DFEV--NPQFVQMVSPNETVVVISLNTQIGEVSGVINLCIPH-VVLEPIIPKLSVHYWMQ 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + ++ + + + + T+++ + L+IG I + Sbjct: 238 SERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDCIALDKPVNAPLTV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 K + + GRV + I+I D Sbjct: 298 MVGNKPKFLGQAGRVNRKQAIQILD 322 >gi|188534127|ref|YP_001907924.1| flagellar motor switch protein FliM [Erwinia tasmaniensis Et1/99] gi|188029169|emb|CAO97041.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] Length = 336 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARAYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ R + ++ ++ N N+ V T + I Sbjct: 152 QRVIGRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFQVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S +Q E D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPLENSLSQDETWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K + +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNKQFALRVEHLINP 324 >gi|226327727|ref|ZP_03803245.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198] gi|225203431|gb|EEG85785.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198] Length = 343 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 98/307 (31%), Gaps = 10/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P P R+ + +++E I+ ++ L + + DI+ + Sbjct: 41 PDIQPYDPNTQRRVVRER--LQSLEIINERFARQFRMGLFNMLR----RSPDITVGGIKI 94 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + L NLV ++NL G + R Sbjct: 95 HPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGREF 154 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + + ++ N N+ V T Sbjct: 155 TNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVR-SEMQVKFTNITSSPNDIVVTTPFQ 213 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRI 246 + I ++ F + IP + ++ ++ Q + +D + + + Sbjct: 214 VEIGSMVGEFSICIPFAMIEPLRERLINPPIENVRQEDGVWLDSLVNQVQHSELELVANF 273 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+TLK G VIP E I +G + + + G V Y +R+ IN Sbjct: 274 TDIPLRLSKVLTLKEGDVIPIDKPE--RLIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 331 Query: 307 DQKSLKN 313 +L Sbjct: 332 VLNALDE 338 >gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus JW/NM-WN-LF] Length = 333 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 111/318 (34%), Gaps = 18/318 (5%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + Q + P R D+ +T++ I+ + L +L + V+I Sbjct: 28 KQQDTQQKVKPYD---FRRPAKFSKDQIRTLQMINENFARLLSTYLSAYLRSY----VEI 80 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 S + + S + S + + N+ +++ L+G ET Sbjct: 81 ELASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEMNPNIAFAVIDRLMGGPGETFE 140 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 L+ +E+ +A++ ++ + + E P E + + + NE Sbjct: 141 STGE--LTEIEEAVARKIFNRMLDSMLEAWKNVGELEPEFERIENNPQFTQIIS--PNEI 196 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN-----QSEDLIDPFARKT 235 V + ++ + F + +P L+ + LS++ +E+ + Sbjct: 197 VAVVAFSVKVGEAEGLFNVCLPY-IFLEPVIDRLSARFWFATGHQKKITEEESQALKNRL 255 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V + + + ++K+ + L+ G VI ++ L K + + G + Sbjct: 256 HKTQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNK 315 Query: 296 YTIRITDRINFDQKSLKN 313 ++IT + SL Sbjct: 316 LAVQITQIVREGDDSLGE 333 >gi|238758098|ref|ZP_04619278.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236] gi|238703636|gb|EEP96173.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236] Length = 334 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T + Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFQV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|259908765|ref|YP_002649121.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96] gi|224964387|emb|CAX55896.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] gi|283478741|emb|CAY74657.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163] Length = 336 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 101/297 (34%), Gaps = 12/297 (4%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P R+ + + +E I+ Y+ L + + DI+ + + + Sbjct: 38 PYDPNTQRRVVRER--LQALEIINERFARSYRMALFNLLR----RSPDITVGAIKIQPYH 91 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + L + S +LV ++NL G ++ R + E Sbjct: 92 EFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTE 151 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 +++ +R + ++ ++ N N+ V T ++ I Sbjct: 152 QRVIRRMLKLALEGYSEAWKPIYPLDVEYVR-SEMQVKFTNITTSPNDIVVTTPFHVEIG 210 Query: 192 NVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 N+ F + IP +++ +L S + E+ D ++ + + Sbjct: 211 NLTGEFNICIPFS-MIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVANFADV 269 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ LK G V+P I +G + + + G + K Y +R+ IN Sbjct: 270 SMRISRLLALKPGDVLPIEK--LDRIIAHVDGVPVLTSQYGTLNKQYALRVEHLINP 324 >gi|123442771|ref|YP_001006748.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161335|ref|YP_004297912.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089732|emb|CAL12585.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605256|emb|CBY26754.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. palearctica Y11] gi|325665565|gb|ADZ42209.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861091|emb|CBX71358.1| flagellar motor switch protein fliM [Yersinia enterocolitica W22703] Length = 334 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V T + Sbjct: 147 HTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVR-SEIQVKFTNITTSPNDIVVTTPFQV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|242238988|ref|YP_002987169.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703] gi|242131045|gb|ACS85347.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703] Length = 343 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 99/301 (32%), Gaps = 10/301 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 S + P P R+ + +++E I+ ++ L + + DI+ Sbjct: 28 SAASADSDIKPYDPNTQRRVVRER--LQSLEIINERFARQFRMGLFNLLR----RSPDIT 81 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + L S +LV ++NL G + Sbjct: 82 AGPIKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTK 141 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 + R + E+++ KR + + + ++ N N+ V Sbjct: 142 VEGREFTHTEQRVVKRMLRLALDAYGDAWNAIYKLDVEYVR-SEMQVKFTNITTSPNDIV 200 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNV 240 T ++ I N+ F + IP + L+ S + ++ + A++ + Sbjct: 201 VTTPFHVEIGNLTGEFNICIPFAMIEPLRELLVNPPLENSRQEDQNWRETLAKQVQHSEL 260 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L V+ LK G V+P E A + +G + + + G Y +R+ Sbjct: 261 ELVANFVDIPLRLSKVLKLKPGDVLPIEKPESLVAHV--DGVPVLTGQYGTFKGQYALRV 318 Query: 301 T 301 Sbjct: 319 E 319 >gi|212709505|ref|ZP_03317633.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM 30120] gi|212687843|gb|EEB47371.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM 30120] Length = 335 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 84/276 (30%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + + Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGAIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++NL G + + + E+++ R + + Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIINRMLKLALGAYRDAWKPIADVEVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 +I N N+ V T + I N F + IP + L+ L + Sbjct: 179 YVR-SEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLTNPPM- 236 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++E + + + + + + + ++ L+ G V+P I+ Sbjct: 237 EQGHQENEAWVTNLVTQVKRSELELIANLVDIPLRISRLLQLQKGDVLPIEKP--DRLIV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + +G + + + G Y +R+ IN +L Sbjct: 295 NVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330 >gi|183598647|ref|ZP_02960140.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827] gi|188020831|gb|EDU58871.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827] Length = 335 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 84/276 (30%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV ++NL G + + + E+++ R + + + Sbjct: 119 EPALVYIAVDNLFGGDGRFPVRSEGKEFTNTEQRIIHRMLKLALSAYRDAWRPIADIDVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ N N+ V T + I N F + IP + L+ LI+ Sbjct: 179 YVR-SEMQVKFTNITTSPNDIVVTTPFLVEIGNTIGEFSICIPIAMIEPLRERLINP-PV 236 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ++E + + + + + + ++ L+ G VIP I+ Sbjct: 237 EQGHQENEAWVSNLVTQVKRSELELVANFVDIPLRISRLLQLQKGDVIPIEKP--DRLIV 294 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 S +G + + + G Y +R+ IN +L Sbjct: 295 SVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDE 330 >gi|157371194|ref|YP_001479183.1| flagellar motor switch protein FliM [Serratia proteamaculans 568] gi|157322958|gb|ABV42055.1| flagellar motor switch protein FliM [Serratia proteamaculans 568] Length = 333 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 41/304 (13%), Positives = 96/304 (31%), Gaps = 12/304 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P R+ + I + + + + DI+ Sbjct: 29 SNESEVKPYDPTTQRRVVRERLHALEI------INERFARQFRMGLFNLLRRSPDITVGP 82 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L+ + +LV ++NL G ++ Sbjct: 83 IKIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ KR + S + + ++ N N+ V T Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVR-AEMQVKFTNITTSPNDIVVTT 201 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNI 242 + I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 202 PFQVEIGALSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELEL 260 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L ++ L+ G V+P I +G + + + G + Y +R+ Sbjct: 261 IANFVDIPMRLSKILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEH 318 Query: 303 RINF 306 IN Sbjct: 319 LINP 322 >gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1] gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1] Length = 332 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 108/285 (37%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + + + F ++ V I+ S F + S + + + + Sbjct: 54 RSLTRIHENFARILTTY----FSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFDV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N+ +++ ++G I ++ N L+ +E K+ + L Sbjct: 110 PPLDGHILMEVNPNIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLRD 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S E P L +F + + NE V I+MN TI + +IIP +L+ Sbjct: 168 AWSNIAEIDPMLSEFEVNPQFLQMVS--PNETVVVISMNTTIGETSGMINIIIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q K+++ + ++ V I + T+ D + L IG V Sbjct: 225 PIIPKLSVSYWMQTKNKDIDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I R + ++ + G + K ++I D + ++ Sbjct: 285 IQLNKRIDAPLTIKVGEIPKFTAQPGELNKRLAVQILDSLKGGEE 329 >gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5] Length = 329 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 104/285 (36%), Gaps = 13/285 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 ++I+ + + L + D++ S + + S F+ S Sbjct: 53 MRSIKNLHDKFARNFSSSLSGYLRSITDMN----LISVDQMTYGEFLMSLPNPTSFNIIS 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + + +LV +++ LLG E P R ++ +E+ + +A L Sbjct: 109 MLPLDGNAVLEVNPSLVFPIIDKLLGGQGE--PIDEVREITDIEQNVIGGVLAIALRELA 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +E ++ + + NE V + + + +V+ + IP +L Sbjct: 167 EVWQPIINIRFKIELRETSPHVIQIVS--QNEVVILLVFEIKVGDVSGMMNICIP-AIVL 223 Query: 208 KTTLISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + + SQ+ + + + N+ + TL++++ L+IG Sbjct: 224 EPIMQKIDSQDWLIGAKKMHATANVQQITSIVSKSRTNLQAVLGESTMTLREILDLEIGD 283 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ + + +L + Y E+G + N +I +I + Sbjct: 284 ILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNNKAFKIHRKIVKED 328 >gi|189911092|ref|YP_001962647.1| flagellar motor switch protein FliM [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775768|gb|ABZ94069.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 341 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 13/289 (4%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 + + ++ + ++ V + S + I S + ++ Sbjct: 52 IRTLQMMHEIFARLATTGLSAQLRALVVVHVASVDQLTYEEFIRSIPNPTTLAVINMDPL 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + ++ T+++ L G E+ NR LS +E + + I +I L + S Sbjct: 112 RGSAILEIDPSISFTIIDRLFGGKGESSKV--NRELSDIELSVMEGIIVRILGNLRESWS 169 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 T + P L + + N+ V I + + V L IP T ++ + Sbjct: 170 TVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKVGEVEGMTNLCIPYIT-IEPII 226 Query: 212 ISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 LS+Q + + +D + Q+ + + + + +L D++ L +G VI Sbjct: 227 NKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPLISEVGSVDISLNDLMNLHVGDVIKL 286 Query: 268 LHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + KT ++ + + GRVG I+I D I + L Sbjct: 287 ENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIGDSI---EDIPDELL 332 >gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70] gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70] Length = 334 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 108/289 (37%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + I S + + + Sbjct: 55 RSLTRIHENFARLLTTF----FAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFEV 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + I + N+ +L+ ++G +I ++ N L+ +E ++ + + L Sbjct: 111 PPLNGHILIEVNPNIAYAMLDRVMGGRGTSINKVDN--LTEIETRIMSNLFDKAFSNLRD 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + E P DF + + N+ V I++N + + + IP +L+ Sbjct: 169 AWESIAEIDPIFTDFEVNPQFLQVIS--PNDTVVVISLNTKVGETSGMINICIPH-VVLE 225 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + S + + R+ + I + T+++ + L++G V Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEAIERRIRFAKLPIIAELGTATITIQEFLQLEVGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + ++ + + G+ K ++I D ++ Sbjct: 286 IELDQSIQQPLLIKVGDIPKFIGQPGKRNKRLAVQILDAFKGEEDYNDE 334 >gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH] gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH] Length = 352 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 103/283 (36%), Gaps = 9/283 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I + + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILSNMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E V + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMVILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K ++ + I K ++++++L+ G VI Sbjct: 239 KLSTRYWHSLIGVGTTSENLDVLREKLENTDMLLVAEIGEVKLKVREILSLEKGDVINLE 298 Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 IL K+ + C +G VG +++IT+++ + Sbjct: 299 DSPIDKDLILKVGTKQKFKCRMGLVGSKISVQITEKVGEVEDF 341 >gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis HTE831] gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 330 Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 15/287 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 ++I +I + + F + V+IS TS + I S + + + + Sbjct: 53 RSISRIHENYARMLTTFFATQLRSY----VNISVTSVDQVPYEEFIRSIPKKTILNLYGM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ LL+ LLG TI + N L+ +EK L + + L Sbjct: 109 EPLDGNLIMEINPNIAYALLDRLLGGKGSTITKDGN--LTEIEKTLFMQMFEKAEDALRD 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S+ E P LE+F + + NE V +++ I + IP +L+ Sbjct: 167 AWSSVVEIEPVLEEFEENPQFMQKI--APNETVVVVSLTTVIGETTGMINICIPH-VILE 223 Query: 209 TTLISLSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + LS + N+ E + + V + + ++ D + + G +I Sbjct: 224 PIIPKLSVHYWMQSNSNKDEQAYGKMQQNLKKTEVELKAILGATTISIHDFLNFQQGDII 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309 +LS + + + G+ +++I + I N D + Sbjct: 284 SLDQPIDAPLLLSIYDQPKFFAQPGKFKNKMSVQILEEIKGVNEDDE 330 >gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2] gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2] Length = 332 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 111/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + I S + + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFIRSIPKMTILNVIEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + N+ +++ L+G +I ++ N L+ +E K+ T + L + Sbjct: 110 PPLDGRILMEVNPNVAYAMMDRLMGGRGTSINKVDN--LTEIETKIMSATFERAFENLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST + P L DF + + NE V I++N TI + + IP +L+ Sbjct: 168 AWSTIADIDPLLADFEVNPQFLQMVS--PNETVVVISLNTTIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + ++I R ++ V + + ++D ++L IG V Sbjct: 225 PIIPKLSVHYWMQTDKKEREPEVIARLERNIHKAEVPVICELGSSDIAIQDFLSLDIGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I I+ + + G++ K ++I D + + Sbjct: 285 IELNQGIDQALIIKVGNIPKFIGQPGKMNKKMAVQILDTVKGGDE 329 >gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD 1] Length = 365 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 8/288 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + L M V+I S + + S F+ S+ Sbjct: 55 RAFRGVHDKMARSLASQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLE 114 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + I + ++ +L+ LLG E P +R S +E L + + + + L + Sbjct: 115 GSGVIEINPSIAFPMLDRLLGGKGE--PFDASREFSDIELSLFETILRVMMSTLKEAWGP 172 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E P +E + + NE V + M + I + + + P + L+ L Sbjct: 173 VMEIYPTIESKESSPNVVQIV--AQNEIVVMVVMEIIIGHSSGMMNICYPVIS-LEPILP 229 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + VN++ + + T++DV+ L+IG V+ Sbjct: 230 KLASRDLMLNETSSKKSRNTELQVLLGGAKVNVEANLGDAELTMRDVLDLQIGDVVRLSS 289 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +S +GKE + ++G +I+I++ I+ ++ ++K L Sbjct: 290 AANDIVTVSIDGKERFRGQIGLRRFRKSIQISEIIDTEKDAVKRALEN 337 >gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC 51449] gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC 51449] Length = 353 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 109/287 (37%), Gaps = 8/287 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + S+ + L M V+I S + + S F+ S+ Sbjct: 54 RAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLE 113 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ +++ LLG + P +R S +E L + Q+ L + S+ Sbjct: 114 GAAILEINPSIAFPMIDRLLGGKGD--PYESSREFSDIELNLLDTLLRQVMQNLKEAWSS 171 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E P+++ + + NE V + M + I + + + P + L+T L Sbjct: 172 ITEIFPSVDAKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMSICYPVIS-LETVLS 228 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + NV + + TLK+++ L++G ++ Sbjct: 229 RLASRDLMLSDTSSKKSRNKELQALIAGANVIVSGYLGDATLTLKEILDLQVGDIVRLDT 288 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 I+S +G+E Y +G T++I + I ++ +K L Sbjct: 289 IADDTIIVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335 >gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597] gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597] Length = 317 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + K + + S + + S + S W F + Sbjct: 41 ERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALESMPSPALISVIESPDWDGPFALVI 100 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +I+ LE G + RS + +EKK+ + L++ + Sbjct: 101 DPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGTEVTQLMLNELSETFGQLAQIEFT 160 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + N + M++T+++ F +++P L ++ L+ Sbjct: 161 ISHIET--NAQAMVLAPPNTGCVRLRMHVTMDDRDGYFYIVMPFNALSNIRNMLVQPFHG 218 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S + +V + R+ K L++V+ K GQV+ L Sbjct: 219 G-SLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQEVLEWKRGQVLDLGIEVDQPVSL 277 Query: 278 SANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLK 312 +G E+Y + G R ++IT+++ +++ Sbjct: 278 ICSGHEMYMAQTGKRKNGRMALKITEQLKDEEEMTD 313 >gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon 786 str. D14] gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon 786 str. D14] Length = 333 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 115/318 (36%), Gaps = 17/318 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 ++ + K R D +++ +I + +L F ++ V Sbjct: 27 LKKEETQKKIRSYD---FKRAVRFSKDHIRSLTRIHENFAR----YLTTYFSAQLRTFVQ 79 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 I+ + + I S + + + + N+ +L+ LLG Sbjct: 80 INVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAFAMLDRLLGGLGTAP 139 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ +L+ +E + +R ++ L + T + +P +E + + NE Sbjct: 140 SKVG--TLTEIETIIMERIFSRAFESLQEAWKTVVDINPRMEALETNPQFMQIVS--PNE 195 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE----DLIDPFARKT 235 + I+++ I + + L IP +++ + LS + +Q + + ++ + Sbjct: 196 TIALISLSTKIGDTSGMINLCIPH-VVIEPIMPKLSVHHWFVSQKKSRVPEEVEALRNRV 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I + + T+++ ++L +G VI + + + Y G V Sbjct: 255 NKAKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQIRVGDRLKYIGSPGTVKDR 314 Query: 296 YTIRITDRINFDQKSLKN 313 ++I + ++ + L Sbjct: 315 LAVQIDEIVSEGAEELDE 332 >gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581] Length = 347 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 105/302 (34%), Gaps = 10/302 (3%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 P P R+ + T++ I+ ++ L + + DI+ S Sbjct: 31 SAPKVRPFDPASQHRIIRER--LHTLDIINERFARHFRMGLFNLIR----RSADITVDSV 84 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + +S + + ++ + I NLV +++NL G + + R Sbjct: 85 RYQSYSEFSRNVPVPTNINMIAMKPLKGSALIVFPPNLVFMVVDNLFGGDGRFLTKSEGR 144 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + E+++ +R + + + + ++ N NE V N Sbjct: 145 EFTNTEQRIIQRMLRLAIEAYSDSWRSVYPLEISFLR-SEMQAKFANITNSPNEIVVNTN 203 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDT 244 N+ + N+ASSF + +P + + ++ + +Q A + V + Sbjct: 204 FNLEVGNLASSFQICMPYSMIEPLRDLLINPLSDGHQDQDSTWTRRMAGEIRHSTVELVA 263 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + DV L++G ++P E A + +G + CE G +R+ Sbjct: 264 DFADLPSRIADVTALEVGDILPLELPETVTAKV--DGVPVMECEYGSQHGQRALRVLRLF 321 Query: 305 NF 306 + Sbjct: 322 DH 323 >gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM 1251] Length = 372 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 104/279 (37%), Gaps = 8/279 (2%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + L M V+I S + + S F+ S+ + I + Sbjct: 67 MARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLEGSGVIEINP 126 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 ++ +L+ LLG E P +R S +E L + + + + L E PN+E Sbjct: 127 SIAFPMLDRLLGGKGE--PFDASREFSDIELSLFETILRVMMSTLKDAWGPVMEIFPNIE 184 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN--- 218 + + NE V + M + I + + P L+ L L+S++ Sbjct: 185 SKESSPNVVQIV--AQNEIVVMVVMEIIIGQSSGMMNICYPVIA-LEPVLPKLASRDLML 241 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + V I+ + + TL+DV+ L+ G ++ + Sbjct: 242 NETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTLRDVLDLQAGDIVRLTSPADDIVTIC 301 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +GK+ + ++G ++++T+ I+ ++ ++K L Sbjct: 302 VDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKRALEN 340 >gi|238796938|ref|ZP_04640442.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] gi|238719198|gb|EEQ11010.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC 43969] Length = 332 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 11/285 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83 ++ + + SL + + + F+ + DI+ + + + + Sbjct: 45 RRVVRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 103 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + ++ S NLV ++NL G + R + E+++ KR + Sbjct: 104 NLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIKRMLTMAL 163 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + S+ + +I N N+ V T + I F + IP Sbjct: 164 EAYDFAWSSIFKLHTEYVR-AEIQVKFTNITSSPNDIVVTTPFYVEIGPHRGEFDICIPF 222 Query: 204 ETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 +++ L+S S + + + A + + + + T L V+ +K Sbjct: 223 S-IIEPLRELLTSPPMENSRQEEKQWRNTLASQVRETELELVASFADIPTRLSQVMKMKE 281 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 G VIP +E A + +G ++S + G V K Y +++ +N Sbjct: 282 GDVIPIDKQESIEACV--DGVPVFSGKYGCVNKQYALKVEKMMNP 324 >gi|300722647|ref|YP_003711937.1| flagellar motor switch and energizing protein [Xenorhabdus nematophila ATCC 19061] gi|297629154|emb|CBJ89750.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus nematophila ATCC 19061] Length = 335 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 81/275 (29%), Gaps = 4/275 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++NL G ++ R + E+++ R + + + Sbjct: 119 EPSLVYIAVDNLFGGDGRFPTKVEGREFTYTEQRIINRMLKLALDAYRDAWDSIFKIEVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ N N+ V T + I + F + IP + + + Sbjct: 179 YVR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALTGEFNICIPFAMIEPLRERLTNPPVE 237 Query: 220 SENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + Q ++ + + L ++ LK G V+P E I+ Sbjct: 238 NLRQEDGQWRKSLVKQVQHSELELVANFVDIPLRLSKILELKAGDVLPIEKPE--RLIVH 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + G + Y +R+ IN +L Sbjct: 296 VDGVPVLISQYGTLHGQYALRVEHLINPVLTALDE 330 >gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911] gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911] Length = 332 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 16/288 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + I S + + + + Sbjct: 54 RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFIRSIPKMTILNVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + N+ +++ ++G +I ++ +L+ +E K+ T + L + Sbjct: 110 PPLDGRILMEVNPNIAYAMMDRMMGGRGSSINKVD--TLTEIETKIMSNTFERAFEHLRE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST E P L +F + + NE V I++N I + + IP +L+ Sbjct: 168 AWSTITEIDPFLAEFEINPQFLQMVS--PNETVVVISLNTMIGETSGMINICIPH-VVLE 224 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + + + + + V + + +++D + L +G V Sbjct: 225 PIIPKLSVHYWMQTEKKEREPEELGRLEDSIQKAQVPVSAELGSADISIQDFLMLDLGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309 I + ++ + G+ K I+I D + + D + Sbjct: 285 IELNQAIDRPLTIKIGDIPKFTGQPGKANKKLAIQILDTLKGGDSDDE 332 >gi|51596032|ref|YP_070223.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 32953] gi|153949279|ref|YP_001401268.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 31758] gi|51589314|emb|CAH20935.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 32953] gi|152960774|gb|ABS48235.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP 31758] Length = 333 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V + + Sbjct: 147 HTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVSTPFQV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGTLSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|22126366|ref|NP_669789.1| flagellar motor switch protein FliM [Yersinia pestis KIM 10] gi|45441387|ref|NP_992926.1| flagellar motor switch protein FliM [Yersinia pestis biovar Microtus str. 91001] gi|108807195|ref|YP_651111.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua] gi|108812461|ref|YP_648228.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|145598589|ref|YP_001162665.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F] gi|149366229|ref|ZP_01888264.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125] gi|165925921|ref|ZP_02221753.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. F1991016] gi|165938773|ref|ZP_02227328.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. IP275] gi|166010886|ref|ZP_02231784.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. E1979001] gi|166210779|ref|ZP_02236814.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. B42003004] gi|167401189|ref|ZP_02306692.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420157|ref|ZP_02311910.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425859|ref|ZP_02317612.1| flagellar motor switch protein FliM [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467512|ref|ZP_02332216.1| flagellar motor switch protein FliM [Yersinia pestis FV-1] gi|170024624|ref|YP_001721129.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis YPIII] gi|186895137|ref|YP_001872249.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis PB1/+] gi|218928944|ref|YP_002346819.1| flagellar motor switch protein FliM [Yersinia pestis CO92] gi|229896268|ref|ZP_04511438.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A] gi|229897205|ref|ZP_04512361.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897932|ref|ZP_04513083.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. India 195] gi|229902837|ref|ZP_04517954.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|270486623|ref|ZP_06203697.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27] gi|294504010|ref|YP_003568072.1| flagellar motor switch protein [Yersinia pestis Z176003] gi|21959351|gb|AAM86040.1|AE013852_2 flagellar motor switch protein [Yersinia pestis KIM 10] gi|45436247|gb|AAS61803.1| flagellar motor switch protein FliM [Yersinia pestis biovar Microtus str. 91001] gi|108776109|gb|ABG18628.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|108779108|gb|ABG13166.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua] gi|115347555|emb|CAL20464.1| flagellar motor switch protein FliM [Yersinia pestis CO92] gi|145210285|gb|ABP39692.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F] gi|149292642|gb|EDM42716.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125] gi|165913387|gb|EDR32009.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. IP275] gi|165922125|gb|EDR39302.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. F1991016] gi|165990230|gb|EDR42531.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. E1979001] gi|166207959|gb|EDR52439.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. B42003004] gi|166961852|gb|EDR57873.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049578|gb|EDR60986.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055258|gb|EDR65055.1| flagellar motor switch protein FliM [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751158|gb|ACA68676.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis YPIII] gi|186698163|gb|ACC88792.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis PB1/+] gi|229680284|gb|EEO76383.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516] gi|229688973|gb|EEO81038.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. India 195] gi|229693542|gb|EEO83591.1| flagellar motor switch protein FliM [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701191|gb|EEO89220.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A] gi|262361804|gb|ACY58525.1| flagellar motor switch protein [Yersinia pestis D106004] gi|262366060|gb|ACY62617.1| flagellar motor switch protein [Yersinia pestis D182038] gi|270335127|gb|EFA45904.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27] gi|294354469|gb|ADE64810.1| flagellar motor switch protein [Yersinia pestis Z176003] gi|320015439|gb|ADV99010.1| flagellar motor switch protein FliM [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 333 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 97/300 (32%), Gaps = 12/300 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + +E I+ ++ L + + DI+ + Sbjct: 33 DVKPYDPTTQRRVVRER--LHALEIINERFARQFRMGLFNLLR----RSPDITVGPIKIQ 86 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + +LV ++NL G ++ R + Sbjct: 87 PYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGREFT 146 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + + +I N N+ V + + Sbjct: 147 HTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVR-SEIQVKFTNITTSPNDIVVSTPFQV 205 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRI 246 I ++ F + IP +++ L++ ++ ED + ++ + + Sbjct: 206 EIGTLSGEFNICIPFA-MIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELVANF 264 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ L+ G V+P I +G + + + G + Y +R+ IN Sbjct: 265 VDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLINP 322 >gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C] Length = 322 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 5/252 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L S + K I + + + W ++ LV E G Sbjct: 60 TSLKFMTDVQSLDTLKAEQITQAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFG 119 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 AS I R S +E K+ ++ L+ S + T Sbjct: 120 ASEPMITNRNGRPFSPIESKVGATFGKLLAYALDGVFGIGDGSLLIFKQTCKAQEFNAET 179 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + + + V + +++P+ + +++ ++ + D Sbjct: 180 FNQSQMF--SCTLGVKCGEVETHVNILMPRSCH-RPIQEAVTRALRAPAKRTDPLWAKRL 236 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ + V I+ I TL ++ TLK+GQ++P L + K +Y C LG+ Sbjct: 237 KQEVSRSRVRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGK 296 Query: 292 VGKNYTIRITDR 303 +G +++IR+T+ Sbjct: 297 IGTSFSIRVTNP 308 >gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC 43531] gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC 43531] Length = 333 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 97/277 (35%), Gaps = 10/277 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + L + +DI +S + + + S V +L I Sbjct: 59 LHESFSRLLNTYLSASLRTMIDIDVSSVEQVTYQEFVQSMANPSVIGILALPPLKGKIII 118 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + + ++ + G P + R L+ +E + +R I + + S E Sbjct: 119 EINPGIAFAYIDRIFGGEGR--PAVKTRVLTDIEMAVMRRFIELATNYFREAWSNVVEFR 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215 PN E + N+ V I +++ + +V + IP +L+ + L+ Sbjct: 177 PNFETMETNSQFAQIV--PPNDMVVLITIHIKMGDVDGMMNICIPY-LVLEPVMSKLTTS 233 Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + S + ++ RK + +V ++ + T+ + +TL G V+ K Sbjct: 234 FWVAASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGDVLQLDTLTK 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G GK ++I+ I + Sbjct: 294 DELVCYVGSNPKFLARPGTAGKRMAVQISGVIEGEDN 330 >gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT 98-5489] Length = 352 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 105/287 (36%), Gaps = 8/287 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + L M V+I S + + S F+ S+ Sbjct: 55 RAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 114 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ +++ LLG + P R S +E L + Q+ L + + Sbjct: 115 GTGVLEINPSIAFPMIDRLLGGKGD--PYESTREFSDIELNLLDTILRQMMQNLKEAWAP 172 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E PN++ + + NE V + M + I + + L P + L++ L Sbjct: 173 ITEIFPNVDVKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 229 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + VN+ + K TL++++ L+ G ++ Sbjct: 230 RLASRDIMLSETSSKKSRNKELQALLGGAKVNVTAMLGETKLTLREILELESGDIVRLDR 289 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 I++ +G+E + +G TI + + I ++ +K L Sbjct: 290 PADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336 >gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans JJ] gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans JJ] Length = 326 Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M D++ S KF + S + L N + Sbjct: 60 RFARLASNAMANAMRKRADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV ++E+ G + + P++ R + +E+ + R + + + E L Sbjct: 120 SRLVFAMVESFFGGAG-SQPKIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEVHIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V + + +EN S ++ +P T ++ L + ++ Sbjct: 179 VRSEVNPQFAAIV--PPSDVVIVVTFEVELENAIGSLIVCLPYAT-IEPIRTKLYASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I F + + V + R + T + +++LK G +I + Sbjct: 236 ERLEVDHAWIARFKERLMETPVEMLVRFGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G V N +I Sbjct: 296 VQGVRKFRGIPGLVKSNKAFQI 317 >gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus thermodenitrificans NG80-2] gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16] gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16] Length = 334 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 104/289 (35%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + + S + + + + Sbjct: 55 RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFEV 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N+ +L+ ++G ++ ++ + L+ +E ++ + A Sbjct: 111 PPLDGHVLLEVNPNIAYAMLDRVMGGRGASMDKVEH--LTEIETRIMSSLFDKAFAHWRD 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + E P DF + N+ V I++N I + IP +L+ Sbjct: 169 AWESVAEVDPLFVDFEVNPQFLRMI--APNDTVVVISLNTQIGEARGMMNVCIPH-VVLE 225 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + +S + R+ + I + T+ + + L++G V Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAGRIERRIRAAQLPIVAELGTAVVTVGEFLQLEVGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I ++ + + G+ K ++I I ++S Sbjct: 286 IQLKQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGGEESYDE 334 >gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125] gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125] Length = 330 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 109/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 ++I +I + L F ++ V IS S + I S + + + Sbjct: 53 RSISRIHENFAR----LLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFEP 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + F I + N+ +L+ LLG ++ ++ N L+ +E ++ + + + Sbjct: 109 APLDGRFLIEVNPNVAYAMLDRLLGGQGVSVNKVDN--LTEIETRIMSQLFQRTLDSFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST E P ++ + + NE V I+++ TI + + +P +L+ Sbjct: 167 AWSTVIELEPEMDAVEVNPQFLQMVS--PNETVVVISLSTTIAETSGMINICLPH-VVLE 223 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS Q K + + +D + Q + I T + + T+ + + L IG V Sbjct: 224 EVLPKLSVHYWMQEKKKQRQPGELDSIEHRVRQAPLLIQTELGRSEITIHEFLHLGIGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + G Y + G+ + +++TD I + Sbjct: 284 IELDQSIHEPLNVRVGGHLKYLAQPGKKKNHLAVQVTDVIEEAAE 328 >gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555] gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016] gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555] gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 331 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 102/284 (35%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKVESVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + V +++ LLG S + R + ++K + K + + L Sbjct: 109 PPLSGTVLFEINPQFVFEIIDLLLGGSGT--GKYKAREFTDIDKNIIKVVNEGLISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E +E N N+ + I+ ++ + + + IP ++ Sbjct: 167 AWEDVMEVETEVEGIET--NPALNQTLAPNDPIALISFSVELGKSTTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ Q+ E + + + + +++ + + T+ + + L IG V+ Sbjct: 225 VLDKLVVQYWFQDGDEEVLAESREKLRERLNIVGIHLTAVLGTVEVTVNEFLNLNIGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + L K Y + G +GKN I I D I+ D + Sbjct: 285 TLKEKTTDPVKLMLEDKIYYYGKPGIIGKNMGIEILDIIDKDVE 328 >gi|197285496|ref|YP_002151368.1| flagellar motor switch protein FliM [Proteus mirabilis HI4320] gi|227355987|ref|ZP_03840379.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] gi|194682983|emb|CAR43414.1| flagellar motor switch protein [Proteus mirabilis HI4320] gi|227163975|gb|EEI48877.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] Length = 343 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 97/307 (31%), Gaps = 10/307 (3%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 + P P R+ + +++E I+ ++ L + + DI+ + Sbjct: 41 PDIQPYDPNTQRRVVRER--LQSLEIINERFARQFRMGLFNMLR----RSPDITVGGIKI 94 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + + L NLV ++NL G + R Sbjct: 95 HPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGREF 154 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + E+++ + + + + ++ N N+ V T Sbjct: 155 TNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVR-SEMQVKFTNITSSPNDIVVTTPFQ 213 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRI 246 + I ++ F + IP + ++ ++ Q +D + + + Sbjct: 214 VEIGSMVGEFSICIPFAMIEPLRERLINPPIENLRQEDSVWLDSLVNQVKHSELELVANF 273 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+TLK G V+P E I +G + + + G V Y +R+ IN Sbjct: 274 TDIPLRLSKVLTLKKGDVLPIDKPE--RLIAHVDGVPVLTSQYGTVHGQYALRVEHLINP 331 Query: 307 DQKSLKN 313 +L Sbjct: 332 VLNALDE 338 >gi|37525864|ref|NP_929208.1| flagellar motor switch protein FliM [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785293|emb|CAE14234.1| Flagellar motor switch protein FliM [Photorhabdus luminescens subsp. laumondii TTO1] Length = 334 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 89/276 (32%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 58 ERFARHFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +LV ++NL G ++ R + E+++ R + S + Sbjct: 118 APSLVYIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLRMALDSYRDAWSAIFKIEVE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ N N+ V T + I ++ F + IP +++ L++ Sbjct: 178 YIR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALSGEFNICIPFA-MIEPLRERLTNPPL 235 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ED + ++ + + L ++ L+ G ++P E I+ Sbjct: 236 ENARQEDSLWRESLVKQVQHSELELVANFADIPLRLSKILQLQPGDILPIDKPE--RLIV 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN +L Sbjct: 294 HVDGVPVLTSQYGTLNGQYALRVEHLINPVLNALDE 329 >gi|119953077|ref|YP_945286.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135] gi|119861848|gb|AAX17616.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135] Length = 352 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 103/283 (36%), Gaps = 9/283 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I A + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E V + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMVILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K ++ + I K ++++++L G V+ Sbjct: 239 KLSTRYWHSLIGVGTTSENLDILREKLENTDMLLVAEIGEVKLKVREILSLAKGDVLNLE 298 Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + IL K+ + C +G VG ++++T+++ + Sbjct: 299 NSPIDKDLILKVGTKQKFKCRMGLVGNKISVQVTEKVGEVEDF 341 >gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1] Length = 326 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 11/283 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + + ++ +S ++ + + Sbjct: 52 RTLEIIFEHYGRLLTTNLPVYLRKS----VQVEVMNSEAVTYSEFTNALSNPVLLGIVNF 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N + ++ L +++ +LG ++ R S +E + +R + +L + Sbjct: 108 APLQGNIIVEMASGLGYAIVDRMLGGRGDS--LDKTREFSEIELLIIERILVICINLLQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP+LE + + +E + I MN+ I +V + +P TL Sbjct: 166 PWQNVLDISPHLERIETNSQYAQIIS--PSEVIAIITMNIKIGDVEGLMNICLPYITLES 223 Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + S Q+ D + + + + + ++KD TL G VI Sbjct: 224 VIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQIPVKAVLGKSLISVKDFSTLVPGDVI 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + ++ G G Y +RIT + +Q Sbjct: 284 RLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRITSVVREEQ 326 >gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor kronotskyensis 2002] gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor kronotskyensis 2002] Length = 329 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 105/286 (36%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + + +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 SPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P LE + + NE V + + M + + IP +++ Sbjct: 167 AWENIVDLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICIPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR ++IT R+ + Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328 >gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM 16294] Length = 366 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 107/288 (37%), Gaps = 8/288 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + L M V+I S + + S F+ S+ Sbjct: 55 RAFRGVHDKMARSLASQISSIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSVKPLE 114 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + I + ++ +L+ LLG E P +R S +E L + + + + L + Sbjct: 115 GSGIIEINPSIAFPMLDRLLGGKGE--PFDASREFSDIELSLFETILRVMMSTLKEAWGP 172 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E P +E + + NE V + M + I + + + P + L+ L Sbjct: 173 VMEIYPTIESKESSPNVVQIV--AQNEIVVMVVMEIIIGHSSGMMNICYPVIS-LEPVLP 229 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + VN++ + ++ D++ LK+G VI Sbjct: 230 KLASRDLMLNETSSKKSRNTELKVLLGGAKVNVEANLGDADLSMHDILELKVGDVIRLSS 289 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 ++ +GKE + E+G +I IT+ I ++ ++K L Sbjct: 290 AANDIVTVAVDGKERFRGEIGLRRFRKSISITEIIETEKDTVKRALEN 337 >gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4] Length = 326 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 108/286 (37%), Gaps = 17/286 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ +V + + ++ +S ++ + + Sbjct: 52 RTLEIIFEHYGRLLSTNLPVYLRK----NVQVEVMNSEAVTYSEFSNALSNPVLLGIVNA 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + I + NL +++ +LG +P R S +E + +R +L + Sbjct: 108 SPLNGSIVIEMAQNLGYAVVDRMLGGKG--VPLDKPRDFSEIELLIIERIFNVAVDLLVE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E P LE + + E + + +N+ I +V + +P TL Sbjct: 166 PWENVCELEPRLERIETNSQFAQIIS--PTEMIALVTLNVKIGDVEGLLNVCLPYLTLES 223 Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L T S Q K E Q + I+ + + I + ++ D + L++G Sbjct: 224 IMDKLNTKYWYSSLQEKDEQQYTETIEAL---ISKAPMPIKAVLGNSSISVNDFLGLQVG 280 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +I + + + ++ G G +Y +RIT I +Q Sbjct: 281 DIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326 >gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797] gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797] Length = 349 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 100/294 (34%), Gaps = 11/294 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + + S + L + + +++ S +S + S + F+ Sbjct: 57 MRAFRALHESFSREFGAALSGMLRSI----IEVKLISVDQLTYSEFVFSLENPTCFNLLE 112 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + S +++ +++ LLG + NR+L+ +E +L R + Sbjct: 113 SETLDGHIILDISPSIIFPIIDRLLGGDGHSHGAYPNRALTEIEIRLVSRITGLAIEGIE 172 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 S + + L + NE + I+ +T+ L IP T + Sbjct: 173 SAWSNLCDWKLRVSQVESNPQLVQIV--PPNEVIVLISFEVTMGETRGIINLCIPFNT-I 229 Query: 208 KTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQ 263 + L+S S +S DL + I R+ L K T +V+ L +G Sbjct: 230 EPLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVLNLAVGD 289 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 VI + G +++ G + I I + + ++ L K Sbjct: 290 VIMCNKGSAQSLTVELEGSPVFTAFPGVYKGHKAISIEKMLAIPRDVIEERLKK 343 >gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii DSM 6725] gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii DSM 6725] Length = 329 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 105/286 (36%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTV----VQMDILSVEQLTYYEFSNSLSNPVVMGIVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + + +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 SPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P LE + + NE V + + M + + +P +++ Sbjct: 167 AWENIVDLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR ++IT R+ + Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328 >gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 353 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 103/284 (36%), Gaps = 8/284 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPVGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++V +++ LLG + R S +E L + Q+ +L + E Sbjct: 117 VLEVNPSIVFPMIDRLLGGKGSSY--DQTREFSDIELNLLDTILKQVMQILKDIWNPVTE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE V + M + I + L P + ++ L + Sbjct: 175 FFPTIDAKESSANVVQIV--AQNEIVIMVVMEIVIGHSRGMMNLCYPVIS-IEGILSKMG 231 Query: 216 SQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +++ + + +V++ + + TLK+V+ L +G I Sbjct: 232 NRDVMLTETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTIRLNKVAN 291 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +++ + KE Y +G G TI+I + I+ ++ +K L Sbjct: 292 DTVVVNIDKKERYLATVGYQGYRKTIKIKEVIHTEKDRVKEVLE 335 >gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198] Length = 357 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 102/278 (36%), Gaps = 8/278 (2%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + L M V+I S + + S F+ S+ + + Sbjct: 63 MARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 ++V ++++ LLG ET + R S +E L + QI L E P+++ Sbjct: 123 SIVFSMIDRLLGGKGETY--DHQREFSDIELNLLDTILRQIMQTLKDAWGPVAEIFPSVD 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS- 220 + + NE V + M M I + + L P + L+ L L S++ Sbjct: 181 AKESSPNVVQIV--AQNEVVIMVVMEMIIGHSSGMLSLCYPVIS-LEAVLSRLGSRDLVL 237 Query: 221 --ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + +++ + +L++++ L+ G +I ++ Sbjct: 238 SETSSKKSRNKELQALIGGAGISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVA 297 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +GK+ + ++G TIRI + I ++ +K L Sbjct: 298 IDGKDKFLADIGLQRYRKTIRIKEAIRTEKDQVKEILE 335 >gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC 33656] gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC 33656] gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629] Length = 326 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 11/283 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + + ++ +S ++ + + Sbjct: 52 RTLEIIFEHYGRLLTTNLPVYLRKS----VQVEVMNSEAVTYSEFTNALSNPVLLGIVNF 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N + ++ L +++ +LG ++ R S +E + +R + +L + Sbjct: 108 APLHGNIIVEMASGLGYAIVDRMLGGRGDS--LDKTREFSEIELLIIERILVICINLLQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + SP+LE + + +E + I MN+ I +V + +P TL Sbjct: 166 PWQNVLDISPHLERIETNSQYAQIIS--PSEVIAIITMNIKIGDVEGLMNICLPYITLES 223 Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + S Q+ D + + + + + ++KD TL G VI Sbjct: 224 VIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQIPVKAVLGKSLISVKDFSTLVPGDVI 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + ++ G G Y +RIT + +Q Sbjct: 284 RLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRITSVVREEQ 326 >gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor hydrothermalis 108] gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor hydrothermalis 108] Length = 329 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 106/286 (37%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + + +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 SPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELVLIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P LE + + NE V + + M + V + +P +++ Sbjct: 167 AWENIVDLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEVEGMANICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR ++IT R+ + Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328 >gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82] gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82] gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1] Length = 326 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 108/286 (37%), Gaps = 17/286 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ +V + + ++ +S ++ + + Sbjct: 52 RTLEIIFEHYGRLLSTNLPVYLRK----NVQVEVMNSEAVTYSEFSNALSNPVLLGIVNA 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + I + NL +++ +LG +P R S +E + +R +L + Sbjct: 108 SPLNGSIVIEMAQNLGYVVVDRMLGGKG--VPLDKPRDFSEIELLIIERIFNVAVDLLVE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E P LE + + E + + +N+ I +V + +P TL Sbjct: 166 PWENVCELEPRLERIETNSQFAQIIS--PTEMIALVTLNVKIGDVEGLLNVCLPYLTLES 223 Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L T S Q K E Q + I+ + + I + ++ D + L++G Sbjct: 224 IMDKLNTKYWYSSLQEKDEQQYTETIEAL---ISKAPMPIKAVLGNSSISVNDFLGLQVG 280 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +I + + + ++ G G +Y +RIT I +Q Sbjct: 281 DIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326 >gi|253990101|ref|YP_003041457.1| flagellar motor switch protein FliM [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781551|emb|CAQ84714.1| flagellar motor switch protein flim [Photorhabdus asymbiotica] Length = 334 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 89/276 (32%), Gaps = 6/276 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 58 ERFARHFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +LV ++NL G ++ R + E+++ R + + + Sbjct: 118 APSLVYIAVDNLFGGDGRFPTKVEGREFTNTEQRVINRMLRMALDSYRDAWDSIFKIEVE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ N N+ V T + I ++ F + IP +++ L++ Sbjct: 178 YVR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALSGEFNICIPFA-MIEPLRERLTNPPL 235 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + ED + ++ + + L ++ L+ G ++P E I+ Sbjct: 236 ENVRQEDSLWRESLVKQVQHSELELVANFVDIPLRLSKILQLQPGDILPIDKPE--RLIV 293 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN +L Sbjct: 294 HVDGVPVLTSQYGTLNGQYALRVEHLINPVLNALDE 329 >gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC BAA-430] gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC BAA-430] Length = 352 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 8/287 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + L M V+I S + + S F+ S+ Sbjct: 55 RAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 114 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ +++ LLG + P R S +E L + Q+ L + + Sbjct: 115 GTGVLEINPSIAFPMIDRLLGGKGD--PYESTREFSDIELNLLDTILRQMMQNLKEAWAP 172 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E P ++ + + NE V + M + I + + L P + L++ L Sbjct: 173 ITEIFPTVDVKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 229 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + VN+ + K ++ +++ L++G ++ Sbjct: 230 RLASRDIMLSETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIVRLDR 289 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 I++ +G+E + +G TI + + I ++ +K L Sbjct: 290 PADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILE 336 >gi|322379819|ref|ZP_08054116.1| flagellar motor switch protein FliM [Helicobacter suis HS5] gi|321147787|gb|EFX42390.1| flagellar motor switch protein FliM [Helicobacter suis HS5] Length = 353 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 103/284 (36%), Gaps = 8/284 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ N Sbjct: 57 RSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPVGGNG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++V +++ LLG R S +E L + Q+ +L + S E Sbjct: 117 ILEVNPSIVFPMIDRLLGGKGS--AYDQMREFSDIELNLLDTILKQVMQILKEIWSPVTE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE V + M + I + L P + ++ L + Sbjct: 175 FYPTIDAKESSANVVQIV--AQNEIVIMVVMEIVIGHSRGMMNLCYPVIS-IEGILSKMG 231 Query: 216 SQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +++ + + +V++ + + TLK+V+ L +G I Sbjct: 232 NRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTIRLNKVAN 291 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +++ + KE Y +G G TI+I + I ++ +K L Sbjct: 292 DVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335 >gi|238782828|ref|ZP_04626857.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] gi|238716251|gb|EEQ08234.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC 43970] Length = 332 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 9/284 (3%) Query: 28 KKTIEKISSSL---GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84 ++ + + SL + + + DI+ + + + + + Sbjct: 45 RRVVRERLHSLEIINERFARQFRIGLFNLLRRSPDITAGNIKIQPYHDFARNLPVPTNLN 104 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 ++ S NLV ++NL G + R + E+++ R +A Sbjct: 105 LVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVINRMLAMALE 164 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 + S+ + +I N N+ V T + I F + IP Sbjct: 165 AYDFAWSSIFKLKTEYVR-AEIQVKFTNITSSPNDIVVTTPFYVEIGPHRGEFDICIPFS 223 Query: 205 TLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 +++ L+S S + + + A + + + + + T L +++++K G Sbjct: 224 -IIEPLRELLTSPPMESSRQEEKQWRNTLASQVRETELELVAKFADISTRLSNIMSMKEG 282 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VIP +E A + +G ++S + G + K Y +++ +N Sbjct: 283 DVIPIDKKESIEACV--DGVPVFSGKYGYMNKQYALKVEKILNP 324 >gi|203284199|ref|YP_002221939.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|203287738|ref|YP_002222753.1| flagellar motor switch protein [Borrelia recurrentis A1] gi|201083642|gb|ACH93233.1| flagellar motor switch protein [Borrelia duttonii Ly] gi|201084958|gb|ACH94532.1| flagellar motor switch protein [Borrelia recurrentis A1] Length = 352 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 103/283 (36%), Gaps = 9/283 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I A + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E V + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMVILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K N+ + I K ++++++L+ G VI Sbjct: 239 KLSTRYWHSLIGVGTTSENLDVLREKLEYTNMPLVAEIGEVKLKVREILSLEKGDVINLE 298 Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + IL KE + C +G VG +++IT ++ + Sbjct: 299 NSSIDQDLILKVGTKEKFKCRMGLVGNKISVQITRKVGEVEDF 341 >gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B] gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B] Length = 326 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 93/271 (34%), Gaps = 8/271 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M D++ S KF + S + L N + Sbjct: 60 RFARLASNAMANAMRKRADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV ++E+ G + + P++ R + +E+ + R + + + E L Sbjct: 120 SRLVFAMVESFFGGAG-SQPKIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEVHIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V + + +EN S ++ +P T ++ L + ++ Sbjct: 179 VRSEVNPQFAAIV--PPSDVVVVVTFEVELENAIGSLIVCLPYAT-IEPIRSKLYASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I F + + V + R + T + +++LK G +I + Sbjct: 236 ERLEVDHAWIARFKERLMETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI--TDRINFD 307 G + G V N +I + I+F+ Sbjct: 296 IQGVRKFRGIPGLVKSNKAFQIVKEEEIHFE 326 >gi|322378965|ref|ZP_08053379.1| flagellar motor switch protein FliM [Helicobacter suis HS1] gi|321148641|gb|EFX43127.1| flagellar motor switch protein FliM [Helicobacter suis HS1] Length = 353 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 103/284 (36%), Gaps = 8/284 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ N Sbjct: 57 RSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPVGGNG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++V +++ LLG R S +E L + Q+ +L + S E Sbjct: 117 VLEVNPSIVFPMIDRLLGGKGS--AYDQMREFSDIELNLLDTILKQVMQILKEIWSPVTE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE V + M + I + L P + ++ L + Sbjct: 175 FYPTIDAKESSANVVQIV--AQNEIVIMVVMEIVIGHSRGMMNLCYPVIS-IEGILSKMG 231 Query: 216 SQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +++ + + +V++ + + TLK+V+ L +G I Sbjct: 232 NRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTIRLNKVAN 291 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +++ + KE Y +G G TI+I + I ++ +K L Sbjct: 292 DVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335 >gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681] gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681] Length = 331 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 106/289 (36%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + +L F ++ V I+ + + I S + + + Sbjct: 52 RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N+ +L+ LLG + ++ +L+ +E + +R ++ L + Sbjct: 108 EPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPSKVA--ALTEIETTIMERIFSRTFDSLQE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T + P LE + + NE + I+++ I + L IP +L+ Sbjct: 166 AWKTVLDIEPRLEAMETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVLE 222 Query: 209 TTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+ ++++ + ID + + + I + + + + + L +G V Sbjct: 223 PIMARLSTHQWFTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDV 282 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I K + K + G V ++I + +N + + Sbjct: 283 ISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVAVQIDEIVNEGVEEIDE 331 >gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 109/287 (37%), Gaps = 8/287 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + S+ + L M V+I S + + S F+ S+ Sbjct: 54 RAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNIFSMKPLE 113 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ +++ LLG + P +R S +E L + QI L + S+ Sbjct: 114 GAAILEINPSIAFPMIDRLLGGKGD--PYENSREFSDIELNLLDTLLRQIMQNLKEAWSS 171 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E P+++ + + NE V + M + I + + + P + L+T L Sbjct: 172 ITEIFPSVDAKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMSICYPVIS-LETVLS 228 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + NV + + +LK+V+ L++G ++ Sbjct: 229 RLASRDLMLSDTSSKKSRNKELQALIAGANVVVSGYLGNATLSLKEVLDLQVGDIVRLDR 288 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 ++S +G+E Y +G T++I + I ++ +K L Sbjct: 289 AADDTILVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKEVLE 335 >gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC BAA-1498] Length = 322 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 90/252 (35%), Gaps = 5/252 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L S + K I + + + W ++ LV E G Sbjct: 60 TSLKFTTDVQSLDTLKADQITQAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFG 119 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 AS + R S +E K+ ++ L+ S + T Sbjct: 120 ASEPMVTNRNGRPFSPIESKVGATFGKLLAYALDGVFGIGDGSLLIFKQTCKAQEFNAET 179 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + + + V + +++P+ + +++ ++ + D Sbjct: 180 FNQSQMF--SCTLGVKCGEVETYVNILMPRTCH-RPIQEAVTRALRAPAKRTDPLWAKRL 236 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ + V I+ I TL ++ TLK+GQ++P L + K +Y C LG+ Sbjct: 237 KQEVSRSRVRIEAFIQQGSMTLNELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGK 296 Query: 292 VGKNYTIRITDR 303 +G +++IR+T+ Sbjct: 297 IGTSFSIRVTNP 308 >gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens MLS10] gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens MLS10] Length = 333 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 109/288 (37%), Gaps = 11/288 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L L ++ V IS S + I S + + + Sbjct: 53 RSLTRIHENFARLLTTQLS----AQLRTFVQISVASVDQLPYDEFIRSVPKQTILNVFEP 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 F + + N+ +L+ +LG E ++ N L+ +E K+ + + + Sbjct: 109 YPLDGRFVLEVNPNIAYAMLDRMLGGQGEAYNKVDN--LTEIEAKIMTQLFQRTLETFRE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ET 205 + +E P ++D + + NE V I+ + TI + + +P E Sbjct: 167 AWLSVEEIDPMMDDLEVNPQFLQLVS--PNETVVVISFSTTIGESSGMINICLPHVVIEP 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 LL + L Q K + + I+ + +++ ++ + T+++ V L +G I Sbjct: 225 LLPKLSVHLWMQTKKKERKPGEIEALELNIKRAPLDVAVQLGQSEITIEEFVHLAVGDTI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++ G Y + G+V ++ ++I + I ++ Sbjct: 285 ELNQSIDELLRMTVGGSPKYKVQPGKVKEHLAVQIVEDIEEEELLYDE 332 >gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor lactoaceticus 6A] gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor lactoaceticus 6A] Length = 329 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 104/286 (36%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGVVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + L +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 SPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P +E + + NE V + + M + + +P +++ Sbjct: 167 AWENIIHIRPRIEKIETNPQFTQIVS--PNETVALVTITMKVGEAEGMANICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR ++IT R+ + Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328 >gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor obsidiansis OB47] gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor obsidiansis OB47] Length = 329 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 106/286 (37%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTI----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 TPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLVNYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P LE + + NE + + + M + V + +P +++ Sbjct: 167 AWENIVELRPRLEKIETNPQFTQIVS--PNETIALVTIAMKVGEVEGMANICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR ++IT R+ + Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328 >gi|183220997|ref|YP_001838993.1| flagellar motor switch protein FliM [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167779419|gb|ABZ97717.1| Flagellar motor switch protein FliM [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 341 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 13/289 (4%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 + + ++ + ++ V + S + I S + ++ Sbjct: 52 IRTLQMMHEIFARLATTGLSAQLRALVVVHVASVDQLTYEEFIRSIPNPTTLAVINMDPL 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + ++ T+++ L G E+ NR LS +E + + I +I L + S Sbjct: 112 RGSAILEIDPSISFTIIDRLFGGKGESSKV--NRELSDIELSVMEGIIVRILGNLRESWS 169 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 T + P L + + N+ V I + + V L IP T ++ + Sbjct: 170 TVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKVGEVERMTNLCIPYIT-IEPII 226 Query: 212 ISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 LS+Q + + +D + Q+ + + + + +L D++ L +G VI Sbjct: 227 NKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPLISEVGSVDISLNDLMNLHVGDVIKL 286 Query: 268 LHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + KT ++ + + GRVG I+I D I + L Sbjct: 287 ENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIGDSI---EDIPDELL 332 >gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4] Length = 272 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 106/281 (37%), Gaps = 13/281 (4%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 +E I G L LP ++ ++ + + ++ + +S + + Sbjct: 1 MEIIFEHYGRLLSTNLPIFLRK----NIQVEVINSEAVTYMEFSNSLSNPVLLGIVDFAP 56 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 +N + ++NL +++ +LG E P R S +E + +R + +L + Sbjct: 57 LETNIIVEMASNLGFAMVDRMLGGVGE--PLDKVRDFSEIELLIIERVMTSCVELLREPW 114 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 ++ P LE + + +E + + +N+ I +V + +P T L+ Sbjct: 115 ENVLDAHPRLERIETNSQFAQIIS--PSEMIAIVTLNIKIGDVEGLMNICLPFIT-LEPV 171 Query: 211 LISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + L+++ +Q E F+ + + + + T+ D L++G ++ Sbjct: 172 MDKLNTKFWYSSQKEKTGASFSDTVEALISRAKIPVKAVLGNSVITVADFSQLQVGDIVK 231 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + ++ G GK Y +R+T I + Sbjct: 232 LDTKVDEELDVFVGDIRKFAALPGASGKEYAVRVTQIIREE 272 >gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira thiodismutans ASO3-1] gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira thiodismutans ASO3-1] Length = 325 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VD + S KF + S + + N + Sbjct: 60 RFARLATNTMANAMRKRVDFNPISIDMSKFGDFMRSLPVPTSINIFKIDPLRGNALMIID 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 LV L+EN G + + P++ R + +E+ + + + + L E + L Sbjct: 120 TRLVFALVENFFGGTG-SQPKIEGRDFTPIEQSIVVKVSKMLLSNLEDAWRPVHEVNIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V + + +EN S V+ +P T ++ L + +S Sbjct: 179 TRSEVNPQFATIV--PPSDVVVVVTFEVELENAIGSMVVCLPYAT-IEPIRSKLYASYQS 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + F + ++ V+ + + + T + ++ ++ G ++ ++ Sbjct: 236 ERLEVDHAWLSRFKERLLEIPVDFNVTMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAY 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G N ++ Sbjct: 296 VQGVLKFHGVPGFTKGNKAFQV 317 >gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC 49957] Length = 353 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 89/266 (33%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + ++ + D+ + + + + + + W Sbjct: 76 RLARLMTSSSRKFTADNADVVIDRTRPVRVGAFLDTVTLPALIGIIRIEEWDGYCLAALD 135 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + L+ ++++ LLG + + R + +E+ ++ ++ ++ L++ +S L Sbjct: 136 SRLIGSIVDILLGGRRNALQPIEGRPYTPIERTFVEKFVSVVTNDLSRAFEAVSPASFRL 195 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 E F T T +T+E +IP + L+ LS + Sbjct: 196 ERFEITPSYALIT--KPTAAALTFRAEITMEGRGGFIDFLIPYAS-LEPVRDLLSQEVLG 252 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + D A + + +V + I + +V + + G V R++ + Sbjct: 253 KKSGGDTIWRSHLAEELPRASVELTAVIESRTVPFSEVASWQPGSVFVLDKRQEDPVDVF 312 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRI 304 G + L + +R+ D + Sbjct: 313 CQGLMVCRATLATKDERVVLRVEDCV 338 >gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus hydrogenoformans Z-2901] gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus hydrogenoformans Z-2901] Length = 335 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 108/286 (37%), Gaps = 13/286 (4%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 + +T+ I + L FL + ++ + S + + S + + Sbjct: 56 NLRTLHLIHDNYARLISNFLTGYLRT----NISVKVASVDQATYEDFLVSVPTPTLITTF 111 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 L + + + + ++ L G S + P++ R L+ +E + K+ ++ L Sbjct: 112 KLHPLKGSMVMETNLQFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENL 169 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 Q + + P +E + L + + NE V I I L +P E + Sbjct: 170 AQAWAEIIKVEPEIEALENNPRLHQVLS--PNEIVAIITFTTEILGNNGLINLCLPFE-V 226 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIG 262 L L LS+ + + + FAR + + + + + +++ + +++G Sbjct: 227 LDPLLAKLSASYWFSHATAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVG 286 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ + L ++++ + GRVG+ +IT I D+ Sbjct: 287 DIVVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE 332 >gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor kristjanssonii 177R1B] Length = 329 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 104/286 (36%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGVVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + L +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 SPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RTFTEIELALIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P +E + + NE V + + M + + +P +++ Sbjct: 167 AWENIIHIRPRIEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR ++IT R+ + Sbjct: 284 LRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKIT-RVEEGEDF 328 >gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum Rt17-B1] gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum Rt17-B1] Length = 329 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 107/285 (37%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + +L + ++V + + S + + Sbjct: 53 RTVQMIHENFARSVSTYLSGKLRSFTSVNVV----GIDQLTYDEYMKSIGNPSFITIFTA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + + +L+ LLG E I R + +E + K+ I I L+Q Sbjct: 109 REFVGSSILNINLEIFYGILDVLLGGPGEVI--DAKRVPTEIEIGIIKKEIVNILTSLSQ 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ++ P +E + SNE V + + + + P ++++ Sbjct: 167 AWASVHPFIPVVESTET--NPQFVQVVPSNEMVLAVTFFVNFGKIEGYMSICWP-SSVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L++Q+ + + +++ + +++ +I K TL +++TL++G V Sbjct: 224 PIGEKLTTQSWFKIKQKEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEILTLEVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + NGK + + G+ NY ++IT I ++ Sbjct: 284 IRLREHYDEPIKIEVNGKTKFLGKPGQFKGNYAVKITKVIEEGEE 328 >gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum 255-15] Length = 327 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 105/273 (38%), Gaps = 10/273 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L F ++ V + + + + IHS + + +L Sbjct: 60 EQFARVLTTHFSAQLRTYVQFTVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEV 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + N+ +L+ LLG E + ++ N L+ +E ++ + + + E Sbjct: 120 NPNIAYAMLDRLLGGPGEGMNKIEN--LTEIETRILTQLFKRAFVQYGAAWESIAEIEAE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--- 216 +D + + NE V +++ +T+ V+ + + +P TL + + LSS Sbjct: 178 YDDLEINPQFLQLVS--PNETVILVSIYVTVGEVSGTLNVCLPFVTL-EPIIPKLSSHFW 234 Query: 217 --QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 Q K ++ + + V++ + + + +++ L++G + R Sbjct: 235 MQQEKRKSADNQESEHMQTQLMGSIVDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDP 294 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L + ++++ G GK+ +++ RI + Sbjct: 295 VELFVDDRKMFKARPGLNGKHLALQVLQRIEEE 327 >gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM 1740] gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes] Length = 354 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 8/287 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + L M V+I S + + S F+ S+ Sbjct: 54 RAFRGIHDKMARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPLD 113 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ +++ LLG + P R S +E L + Q+ L + + Sbjct: 114 GTGVLEINPSIAFPMIDRLLGGKGD--PYEATREFSDIELNLLDTILRQMMQNLKEAWAP 171 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E P+++ + + NE V + M + I + + L P + L++ L Sbjct: 172 VAEIFPSVDAKESSPNVVQIV--AQNEIVIMVVMEIIIGHSSGMMNLCYPVIS-LESVLS 228 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + VNI + LK+V+ L +G ++ Sbjct: 229 RLASRDLMLSETSSKKSRNRELQALLGGAAVNISAVLGGTSLDLKEVLELGVGDIVRLDR 288 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 I++ +G+E Y +G T++I + I ++ +K L Sbjct: 289 PADDTVIVNVDGREKYIATIGLQRYRKTVKIKEVIKTEKDQVKEILE 335 >gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor owensensis OL] gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor owensensis OL] Length = 329 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 105/286 (36%), Gaps = 14/286 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + S + + +S V + Sbjct: 53 RTLQMIFENYARIVTTFLSGYLRTV----VQMDVLSVEQLTYYEFSNSLSNPVVMGIVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + +++ +LG + I ++ R+ + +E L +R + Q+ + Sbjct: 109 APLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLLQQLINYFQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + P LE + + NE V + + M + + +P +++ Sbjct: 167 AWENIIQLRPRLEKIETNPQFTQIVS--PNETVALVTIAMKVGEAEGMANICLPH-MVIE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS++ +++ + +K + V + + + T+++ + L++G V Sbjct: 224 PIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREFLELQVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + R+ + K + GR I+IT R+ + Sbjct: 284 LRLDRRKNQEIEVYVGNKLKFYGVPGRKEGRVAIKIT-RVEEGEDF 328 >gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens MI-1] gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens MI-1] Length = 330 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 100/273 (36%), Gaps = 9/273 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + L Y + L + + I S + I+S V + SL+ Sbjct: 53 RTLHVLHEGYARLLSNFLSGYLRTPITIEIASIGQFTYEEFINSVPSPTVMTIFSLAPLK 112 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + + + +++ G E P+ R L+ +E ++ R I ++ L Sbjct: 113 GSALMETNLQFLFPIIDLQFGGLGEMPPKT--RELTDIELSVSNRIIKRLLDHLTISWKD 170 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT-IENVASSFVLIIPQETLLKTTL 211 SP +E +L + N+ V I + E V L +P LL L Sbjct: 171 IMSVSPKVESIDANPHLHQL--MSPNDIVVVITFSTGVAEEVRGLINLCLPYS-LLDPIL 227 Query: 212 ISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S N+ +E Y + +V I + + T+KD + L++G V+P Sbjct: 228 SKFSMANQFTKTTEQDQKELMALEYWLGESDVAISVVMGEAQITVKDFLQLQVGDVLPLG 287 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + Y ++G VG++ +++T Sbjct: 288 RGLTQDLDMYVDEELKYKVQVGTVGQSLAVQVT 320 >gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1 BON] Length = 335 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 100/280 (35%), Gaps = 12/280 (4%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + ++L + + ++ S + + ++S E V + Sbjct: 59 LHENFCRYLSSYLAGFLRIYCQVNIVSVEELTYYEFMNSLPEPVVLGIMDFQPMDGKIVV 118 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + N+ +++ +LG S ++ + S +E L +R + QI +L + + + Sbjct: 119 EIAPNISYAMIDRVLGGSGRAAEEMT--AFSEIELALIERILRQIGTLLQESWANVAAIT 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 P LE + NE + + + + +V + IP T+ + L+++ Sbjct: 177 PKLERIETNAQFAQII--APNETAALVTLMLKVGDVEGMVNICIPHVTI-EPISDELTTR 233 Query: 218 NKSENQSEDLIDP-------FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 N+ ++ + ++ + + I + ++ D + L G +I Sbjct: 234 FWFSNEKKEKAERDEVSFNTLRKRIENVQIPIRAILGESTISIGDFMQLSPGDIIQLDES 293 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + + G + ++ITD I ++ + Sbjct: 294 VDNHIKVMVGDITKFYGKPGLRHNHMAVKITDVIYQEEDT 333 >gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 331 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 107/284 (37%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V + S Q + IHS V + + Sbjct: 53 RTLELIHDNYARIISNYL----TAQVRTNVKVKVESVQQITYEEFIHSVPNPTVLTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + V +++ LLG + + ++ + ++K + K A + + L Sbjct: 109 PPLSGSVLFEVNPQFVFQIIDLLLGGNGKGKYKVKE--FTDIDKNIIKVVNAGLISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 +E N N+ V I ++ + N ++ + IP ++ Sbjct: 167 AWEDVMPIETEVEGLET--NPALNQTLAPNDPVALITFSVEMGNSSTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ Q+ E+ + + + ++V + + T+++ + L +G V+ Sbjct: 225 VLDKLVVQYWFQDSDEDILNESREKLRNRLDIVDVELTAILGTVDVTVQEFLNLNVGDVL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + L K Y + G + KN + I D ++ D + Sbjct: 285 TLKEKTTSPVKLMVEDKVYYYGKPGVIDKNMGVEILDILDKDVE 328 >gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM 2489] gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM 2489] Length = 344 Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 110/289 (38%), Gaps = 9/289 (3%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 + S++ + + ++ V + S + I S + ++ Sbjct: 52 IRTVSNMHETFARLTTTSLSAQLRTLVHVHVASVDQLTYEEFIRSIPTPTTLAVINMDPL 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 N + + + +++ L G S +T ++ NR L+ +E+ + + I +I A + + + Sbjct: 112 KGNAVLEIAPEITFIIIDRLFGGSGDTGGKV-NRDLTDIEQSVMEGIIVRILANMREAWT 170 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + P L+ + +E V + + + I A + IP T ++ + Sbjct: 171 QVIDLRPRLQQIETNPQFAQIV--PPSEMVILVTLEIKIGEEAGMMNICIPYIT-IEPIV 227 Query: 212 ISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 LSS + + + K + + + I ++DV++L+ G VI Sbjct: 228 SKLSSSFWFSSVRRSSTTQYLGTLKEKLADVEMELVADIGSINVPIRDVLSLRTGDVIRL 287 Query: 268 L-HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + LS K+ + C+ G VGK ++I ++I+ + L Sbjct: 288 NTIKVGEPLTLSVGSKKKFYCQPGVVGKKVAVQIIEKIDEQETENFEEL 336 >gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3] Length = 322 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 3/251 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L S + K + I + + + W + LV E G Sbjct: 60 TSLKFTTDVQSLDTLKANQITQAIGTEALLIYFNSDHWGDDVIFVLDATLVELATEVFFG 119 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 AS + R S VE K+ ++ L+ S + T Sbjct: 120 ASEPMVTNRNGRPFSPVECKVGATFGKLLAYALDGVFGIGDGSLLIFKQTCKAQEFNAET 179 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFA 232 S F + + + V + +++P+ + +++ Sbjct: 180 FNQSQMF--SCTLGVKCGEVETRVNILMPRSCHRPIQEAVTRALRTPAKRTDPLWAKRLK 237 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + V+I+ I TL ++ TLK+GQ++P L + K +Y C LG++ Sbjct: 238 QEVSRSRVHIEAFIQQGSMTLNELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKI 297 Query: 293 GKNYTIRITDR 303 G +++IR+T+ Sbjct: 298 GTSFSIRVTNP 308 >gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli 95/1000] gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli 95/1000] Length = 343 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 105/294 (35%), Gaps = 13/294 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ + + + L + + + V S + I S + S+ Sbjct: 55 RTLQMMHENFARVTTTSLSAQLRTLVGIHV----ASVDQLTYEEFIRSVSNPSTLAIVSM 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + ++ T+++ L G + E+ P+ NR L+ +E + + I +I L + Sbjct: 111 DPLKGSSILEIDPSITFTIIDRLFGGAGES-PKNLNRELTDIELSVMEGIIVRILGNLRE 169 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + P L + + N+ V I + + +V IP T ++ Sbjct: 170 AWSQVIDLRPRLGSIETNPQFAQMVS--PNDMVVLITLETKVADVEGMMNFCIPYIT-IE 226 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L S+Q + K + V + + L D++ L+ G V Sbjct: 227 PILSKFSAQYWYASVRRGSTSENLKIIKEKLQNIYVETSAELGSMQLPLSDILNLQKGDV 286 Query: 265 IPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + F + I ++ + C G G +++T ++ + ++ L K Sbjct: 287 VKFTETKITDPVIFKIGTRKKFLCRPGISGSRMAVQLTGVMDGETDITEDDLLK 340 >gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] Length = 330 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 101/273 (36%), Gaps = 8/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + V+++ S + +S + S F + Sbjct: 60 ENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIIDASPLEGPFLLEL 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NN +L+ LLG + + +R + +E L + + QI +L + S + +P+ Sbjct: 120 NNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLEEPWSNIIDLTPS 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L + + NE V +++ I +P T L+ + L+++ Sbjct: 178 LMRVETNSQFAQIIS--PNETVALCTLSIKINETEGMMNFCMPHLT-LEPIVPKLTTKFW 234 Query: 220 SENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + K + + + ++ T+ D++ ++G VI R Sbjct: 235 FSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVIMLDKRYNEPVE 294 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + K + G K Y+++IT+ I + Sbjct: 295 VIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327 >gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10] gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5] gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10] gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5] Length = 332 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 105/289 (36%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + +L F ++ V I+ + + I S + V + Sbjct: 53 RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTVLNIFEA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N+ +L+ LLG + + S++ +E + +R ++ L + Sbjct: 109 EPLVGRMVLEVHPNIAYAMLDRLLGGTGIAPSSIS--SMTEIETIIMERIFSRAFDSLQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T + SP LE + + NE + I+++ I + L IP +L+ Sbjct: 167 AWKTVLDISPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVLE 223 Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+ ++ + + +D ++ + + I + + + T+ + + L +G V Sbjct: 224 PIMSKLSAHQWFISEKKASVPEEVDALKQRVSKAKLPIVAELGVSQLTVSEFLGLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I + K + G + ++I + + + Sbjct: 284 ISLNKPMHDGLSIKVGDKLKFIGSPGTIKDRVAVQIDEIVIEGAEEFDE 332 >gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus polymyxa SC2] gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus polymyxa SC2] Length = 332 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 106/289 (36%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + +L F ++ V I+ + + I S + + + Sbjct: 53 RSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRSIPKMTILNIFEA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N+ +L+ LLG + ++ +L+ +E + +R ++ L + Sbjct: 109 EPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPTKVT--ALTEIETTIMERIFSRTFDSLQE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T + P LE + + NE + I+++ I + L IP +L+ Sbjct: 167 AWKTVLDIEPRLEAMETNPQFMQIVS--PNETIALISLSTKIGDTTGMINLCIPH-VVLE 223 Query: 209 TTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+ ++++ + ID + + + I + + + + + L +G V Sbjct: 224 PIMARLSTHQWFTSEKKSRAPEEIDALRLRVTKAELPIIAELGESRINVAEFLGLSVGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I K + K + G V ++I + +N + + Sbjct: 284 ISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVAVQIDEIVNEGVEEIDE 332 >gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus B316] Length = 327 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ +V +S + ++ +S ++ + + Sbjct: 52 RTLEMIYEHYGRLLSTTLPLYLRK----NVQVSVANSETVTYSEFSNALSNPVILGVINF 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N+ + ++ +LG T R + +E L ++ + ++ + Sbjct: 108 LPLQGTIILELQANIGFSFIDRMLGGEGGT--LDKPRPFTDIEMPLIEKLVTICMQLMVE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 +P +E + + + + + +N+ I + + +P TL Sbjct: 166 PWQNVVAINPVMERIETNPQFAQVIS--PTDMIAIVTLNIKIGDTEGLMNVCLPYFTLES 223 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + +N ED D +++V + + ++ D V L+ G +I Sbjct: 224 VMDKLNTKFWFSTMQKNADEDYEDTLESMVKRVDVPVKAILGKCNVSVSDFVHLQAGDII 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +R T + ++ G Y +RIT + + + Sbjct: 284 RLDNRVNTDMQVYVGNIFKFTALPGTAKDKYAVRITSVVREEDE 327 >gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum BKT015925] Length = 331 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 105/284 (36%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V I + Q + IHS + + + Sbjct: 53 RTLELIHDNFARIISNYL----TAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + +++ LLG + R + ++K + K+ + A L Sbjct: 109 PPLSGSILFETNPQFAYQIIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 + P +E N NE V I ++ + ++ + IP ++ Sbjct: 167 AWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ + + E+ + R+ + + + + K T+ + +TL +G V+ Sbjct: 225 VLDKLVVQYWFRENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + G +GKN ++I D I+ D + Sbjct: 285 TLDALTSSPVKMMVGNQPYLLAKPGTMGKNRGVQILDIIDKDVE 328 >gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3] gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3] Length = 334 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 100/289 (34%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + + S + + + + Sbjct: 55 RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFEV 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N+ +L+ ++G + ++ + L+ +E ++ + Sbjct: 111 PPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVYWRD 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + E P DF + N+ V I++N I + IP +L+ Sbjct: 169 AWESVAEVDPLFVDFEVNPQFLRMI--APNDTVVVISLNTQIGEARGMMNVCIPH-VVLE 225 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + +S + ++ + I + T+ + + L+ G V Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I ++ + + G+ K ++I I D+ Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDKDDHDE 334 >gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae WA1] gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM 12563] gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae WA1] gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM 12563] Length = 343 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 102/294 (34%), Gaps = 13/294 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ + + + L + + + V S + I S + S+ Sbjct: 55 RTLQMMHENFARVTTTSLSAQLRTLVGIHV----ASVDQLTYEEFIRSVSNPSTLAIVSM 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + ++ T+++ L G P+ NR L+ +E + + I +I L + Sbjct: 111 DPLKGSSILEIDPSITFTIIDRLFGG-PGESPKNLNRELTDIELSVMEGIIVRILGNLRE 169 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + P L + + N+ V I + + +V IP T ++ Sbjct: 170 AWSQVIDLRPRLGSIETNPQFAQMVS--PNDMVVLITLETKVADVEGMMNFCIPYIT-IE 226 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L S+Q + K + V + + L D++ L+ G V Sbjct: 227 PILSKFSAQYWYASIRRGSTSENLKIIKEKLQNIFVETSAELGSMQLPLSDILNLQKGDV 286 Query: 265 IPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + F + I ++ + C G G +++T ++ + ++ L K Sbjct: 287 VKFTDTKITDPVIFKIGNRKKFLCRPGISGSRMAVQLTGVMDGEADITEDDLLK 340 >gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum DSM 12653] Length = 330 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 101/273 (36%), Gaps = 8/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + V+++ S + +S + S F + Sbjct: 60 ENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIIDASPLEGLFLLEL 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +NN +L+ LLG + + +R + +E L + + QI +L + S + +P+ Sbjct: 120 NNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLEEPWSNIIDLTPS 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L + + NE V +++ I +P T L+ + L+++ Sbjct: 178 LMRVETNSQFAQIIS--PNETVALCTLSIKINETEGMMNFCMPHLT-LEPIVPKLTTKFW 234 Query: 220 SENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ++ + K + + + ++ T+ D++ ++G VI R Sbjct: 235 FSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVIMLDKRYNEPVE 294 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + K + G K Y+++IT+ I + Sbjct: 295 VIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327 >gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73] gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73] Length = 322 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 91/252 (36%), Gaps = 5/252 (1%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L S + K I + + + W + L+ + E G Sbjct: 60 TSLKFTTDVQSLDTLKADQITQAIGTEALLIYFNSDCWGDDVIFVLDATLIELVTEVFFG 119 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 AS + R S E+K+ + ++ ++ S + T Sbjct: 120 ASEPIVTNRNGRPFSPTERKVGETFGKLLAYAIDGVFGVGDGSLLIFKQTCKAQEFNAET 179 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPF 231 S F + + + V + +++P+ + +++ +S + D Sbjct: 180 FNQSQMF--SCTLGVKCGEVEAKVNILMPRSCH-RPIQEAVTRALRSPAKRTDPLWAKRL 236 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++ + V I+ I TL ++ LK+GQV+P + L + K +Y C LG+ Sbjct: 237 KQEVSRSRVRIEAFIQQGSMTLNELSILKVGQVLPLPANAEKQIRLRSGNKSLYKCSLGK 296 Query: 292 VGKNYTIRITDR 303 +G +++IR+T+ Sbjct: 297 IGTSFSIRVTNP 308 >gi|224534350|ref|ZP_03674928.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S] gi|224514452|gb|EEF84768.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S] Length = 352 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I A + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E + + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K + + I K ++++++L G V+ Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLNKGDVLNLE 298 Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L KE + C +G +G +++IT++I Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIG 336 >gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis BI429] gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis BI429] Length = 329 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 108/282 (38%), Gaps = 11/282 (3%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 E+ L + + L F ++ V ++ + I S K + S + Sbjct: 52 ERTLQMLHENFARTLSTYFSGRLRSFVAVNLVGIDQMTYDEFIKSIKNPSFITIFSAKEF 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + + +LE LLG NR + E ++ ++ + I L+Q + Sbjct: 112 VGSAVLDIDLAIFYGILEILLGGPGSMTE--INRPPTETEIEVMRKEVVNILTNLSQAWT 169 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 T P +E I+ + ++ NE V I + I NV + P +L++ Sbjct: 170 TVYSFVPVIE---AIETNPQFVQVVALNEMVLVITFFVNIGNVEGYVNICWP-SSLIEPI 225 Query: 211 LISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L++Q+ + + SE+ + + V + I TL D++ L++G VI Sbjct: 226 GEKLTTQSWFKTKQKVVSEEDMKALKENLARTIVELSATIGETNLTLWDILNLEVGDVIR 285 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ + NGK+ + G Y ++I + + ++ Sbjct: 286 LNTFKEDPLKIKLNGKDKFLGAPGVFKGKYAVKILEVFDEEE 327 >gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA] gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA] gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens KN400] Length = 328 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 ++ V+I S KF I + + I + LV T+ Sbjct: 66 GTLSNRLGRIVEIKKLGAGSYKFDDFIQTLPSPVCMAIYKADPLKGAALIAFDSTLVFTI 125 Query: 108 LENLLGASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 ++ +LG + ++ NR +++E +L ++ + + L + + + +L + Sbjct: 126 VDCILGGTGMTSVQTSANRMFTSIELRLVQKIVQDMLVDLEKAWAPLYAAKMSLLR---M 182 Query: 167 DYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQ 223 + + N + E+ V T+ M + I+ + V +P T ++ L S + + Sbjct: 183 EMNPRLVNIVPPEYQVVTMEMQIQIDQLEGKMVFAVPYMT-IEPIRDKLKSGAQFDLMAI 241 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 +++ + +++ + +L D+++L G I + + G Sbjct: 242 DPQWSFRLSKELLEAPLDVSVEVGGAVISLNDLLSLVPGDTIMLDTPCTSDLTVKVGGVP 301 Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309 ++ G N ++IT+ + ++ Sbjct: 302 KFTGMPGIRHGNKALQITNVVGKGEQ 327 >gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM 12260] gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM 12260] Length = 334 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 102/282 (36%), Gaps = 11/282 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + I+ I S L + + V S + I S + V + Sbjct: 53 RAIQMIHDSFARQLTTSLSTLVRSM----VSAEVASVDQMAYDEFIRSLVQPTVIGVLEM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N + + +LV ++++ +LG E P R L+ +E+ + +R + +I L + Sbjct: 109 YPLSGNAVLEMNPHLVFSIIDRMLGGKGE--PLRKPRDLTDIERTVVERVMMKILEHLEE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST + E + + + V + + + + L IP + Sbjct: 167 SWSTVVDVRFRFESMESNPFFVQIC--PGTDMVLLVTLKIQVGETEGIMNLCIPYFVMEP 224 Query: 209 TTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 S + + E + D +++ ++++V + + TL DV+ L++ VI Sbjct: 225 MIDKLSSQHWFASTGKKNLEGIRDMLSKRLHEVSVPLALELGHCALTLGDVLQLQVNDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + L + + C+ G K+Y + + + + Sbjct: 285 RLDGKATDPLGLRVGNRVKFLCQAGLSEKHYAGSVLEVVQDE 326 >gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1] gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1] Length = 326 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 88/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M D++ S KF + S + L N + Sbjct: 60 RFARLASNAMANAMRKRADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV ++E+ G + + P++ R + +E+ + R + + + E L Sbjct: 120 SRLVFAMVESFFGGAG-SQPKIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEVHIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V + + +EN S ++ +P T ++ L + ++ Sbjct: 179 VRSEVNPQFAAIV--PPSDVVVVVTFEVELENAIGSLIVCLPYAT-IEPIRSKLYASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I F + + V + R + T + +++LK G ++ + Sbjct: 236 ERLEVDHAWIARFKERLMETPVELLVRFGRSQITGRQLLSLKPGDILMLENDVDELLEAE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G V N +I Sbjct: 296 IQGVRKFQGIPGLVKSNKAFQI 317 >gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans P7] Length = 332 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 104/285 (36%), Gaps = 12/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTVFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + +++ LLG + R + ++K + + + L Sbjct: 109 PPLSGSVLFETNPQFSFEIIDVLLGGKGT--GKYKAREFTDIDKNIMMVINTGLISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E + +E N NE V I ++ + ++ + IP ++ Sbjct: 167 AWDDVLEVNTEIEGLET--NPALNQTLAPNEAVALITFSVEMGKSSTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L ++ Q+ ++ E+ ++ +N+N+ + T+ D + L +G V Sbjct: 225 VLDKLVVQYWFQDTNDEAILEESRVKLRQRLNIVNMNLTAVLGTTNITVDDFLRLGVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + T L K + G +GKN ++I D I+ D + Sbjct: 285 LTLNDKANTPIKLMVEDKPYCYGKPGVLGKNMGVQILDIIDKDVE 329 >gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus HTA426] gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61] gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52] gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61] gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52] Length = 334 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 100/289 (34%), Gaps = 13/289 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F F ++ V IS S + + S + + + + Sbjct: 55 RSLTRIHENFARLLTTF----FSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFEV 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + N+ +L+ ++G + ++ + L+ +E ++ + Sbjct: 111 PPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVHWRD 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + E P DF + N+ V I++N I + IP +L+ Sbjct: 169 AWESVAEVDPLFVDFEVNPQFLRMI--APNDTVVVISLNTQIGEARGMMNVCIPH-VVLE 225 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q + + +S + ++ + I + T+ + + L+ G V Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 I ++ + + G+ K ++I I D+ Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDEDDHDE 334 >gi|15594623|ref|NP_212412.1| flagellar motor switch protein FliM [Borrelia burgdorferi B31] gi|111115103|ref|YP_709721.1| flagellar motor switch protein FliM [Borrelia afzelii PKo] gi|195941368|ref|ZP_03086750.1| flagellar motor switch protein FliM [Borrelia burgdorferi 80a] gi|216263834|ref|ZP_03435828.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1] gi|216264557|ref|ZP_03436549.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a] gi|218249869|ref|YP_002374801.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7] gi|221217666|ref|ZP_03589134.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a] gi|223888930|ref|ZP_03623521.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b] gi|224533145|ref|ZP_03673745.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23] gi|224533778|ref|ZP_03674366.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a] gi|225549106|ref|ZP_03770081.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a] gi|225550153|ref|ZP_03771113.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a] gi|225552170|ref|ZP_03773110.1| flagellar motor switch protein FliM [Borrelia sp. SV1] gi|226320579|ref|ZP_03796139.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805] gi|226321596|ref|ZP_03797122.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26] gi|3913687|sp|Q57511|FLIM_BORBU RecName: Full=Flagellar motor switch protein FliM gi|1165263|gb|AAA85602.1| FliM [Borrelia burgdorferi] gi|1185056|gb|AAB58965.1| switch protein [Borrelia burgdorferi] gi|2688188|gb|AAC66670.1| flagellar motor switch protein (fliM) [Borrelia burgdorferi B31] gi|110890377|gb|ABH01545.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|215979878|gb|EEC20700.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1] gi|215981030|gb|EEC21837.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a] gi|218165057|gb|ACK75118.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7] gi|221192343|gb|EEE18562.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a] gi|223885746|gb|EEF56845.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b] gi|224511872|gb|EEF82273.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23] gi|224513071|gb|EEF83434.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a] gi|225369265|gb|EEG98718.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a] gi|225370332|gb|EEG99770.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a] gi|225371168|gb|EEH00598.1| flagellar motor switch protein FliM [Borrelia sp. SV1] gi|226232785|gb|EEH31538.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26] gi|226233998|gb|EEH32719.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805] gi|312147869|gb|ADQ30528.1| flagellar motor switch protein FliM [Borrelia burgdorferi JD1] gi|312149126|gb|ADQ29197.1| flagellar motor switch protein FliM [Borrelia burgdorferi N40] Length = 352 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I A + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E + + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K + + I K ++++++L G V+ Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLE 298 Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L KE + C +G +G +++IT++I Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIG 336 >gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2] gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2] Length = 333 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 108/297 (36%), Gaps = 14/297 (4%) Query: 18 LARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 R T D +++ +I + +L F ++ V I+ + + I S Sbjct: 41 FKRATRFSKDHIRSLTRIHENFAR----YLTTYFSAQLRTFVQINVVQVEQLPYDEFIRS 96 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + + N+ +L+ +LG ++ N L+ +E + + Sbjct: 97 IPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRMLGGQGMAPSKINN--LTEIETIIME 154 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 R A+ L + T + SP LE + + NE + I+++ I + Sbjct: 155 RIFARAFESLQEAWKTVIDISPRLEALETNPQFMQIVS--PNETIALISLSTKIGDTTGM 212 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTT 252 L IP +++ + LS+ + +Q ++ I + ++ + + I + T Sbjct: 213 INLCIPH-VVIEPIMPRLSAHHWFVSQKKERIPEEVEMLEQRVSKAKLPIVAELGESVIT 271 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +K+ + L +G VI + K + G V +++ ++ + Sbjct: 272 IKEFLGLAVGDVISLNKPIDDGLRIKVGEKLKFIGSPGSVKDRIAVQVDLVVSEGAE 328 >gi|51598538|ref|YP_072726.1| flagellar motor switch protein FliM [Borrelia garinii PBi] gi|219684519|ref|ZP_03539462.1| flagellar motor switch protein FliM [Borrelia garinii PBr] gi|219685746|ref|ZP_03540557.1| flagellar motor switch protein FliM [Borrelia garinii Far04] gi|51573109|gb|AAU07134.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219671881|gb|EED28935.1| flagellar motor switch protein FliM [Borrelia garinii PBr] gi|219672685|gb|EED29713.1| flagellar motor switch protein FliM [Borrelia garinii Far04] Length = 352 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I A + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E + + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K + + I K ++++++L G V+ Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLIAEIGEVKLKVREILSLDKGDVLNLE 298 Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L KE + C +G +G +++IT++I Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIG 336 >gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 342 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 105/273 (38%), Gaps = 9/273 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L F + V + S + + I S + V + SSN + Sbjct: 61 EFFSRQLTTAFSSFVRTMVSVEVASVEQLSYDEFIKSLVQPTVIVVMEMYPLSSNALLEI 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + LV +++ +LG + +T + R L+ +E+ + +R + ++ +L + +T + Sbjct: 121 NPRLVFAIIDRMLGGAGKTTYK--ARELTDIERTVTERVVMRMLELLEESWATIVDLRFR 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ Y + +++ V I + + I +V + IP ++ + LSSQ Sbjct: 179 IQNMESNPYFAQIC--PASDVVVVITLQVKIGDVDGFINICIPYFA-IEPVIDQLSSQRW 235 Query: 220 SENQSEDLIDPFARKTYQ--LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCA 275 + D + + V + + + LKD++ L++G VI Sbjct: 236 FVSTGSREDDASQERIIERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVIKLEETYSEPV 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + + G ++++I ++ Sbjct: 296 KVRVGERVKFLGHAGIYNNKHSVQIIKTFISEK 328 >gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC 100599] gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC 100599] Length = 331 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 90/274 (32%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L F ++ V I+ S + I S + + + + Sbjct: 60 ENYARLLTTYFSAQLRTFVQITVASVDQLPYDEFIRSIPKMTILNIFEAPPLEGRMVLEV 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + N+ T+L+ LLG ++ +L+ +E + +R + ++ E P Sbjct: 120 NPNIAYTMLDRLLGGQGAIPEKMG--ALTEIETTVMERVFGKALDTFHEAWKQIIELDPY 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 E + + NE V I+ + I + L +P +L+ + LS Q Sbjct: 178 QEGLEMNPQFMQIVS--PNEIVVVISFSTKIGDTTGMINLCLPH-VVLEPIMTKLSGQYW 234 Query: 220 SENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 Q + + + + I + T+ D + L+ G VI Sbjct: 235 FSKQKKTRDEEERLRVEERVKVAKLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKL 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + G ++I + I ++ Sbjct: 295 KIKVGNHLKFLGQPGTHKGRVAVQIDEVIEEGEE 328 >gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4] gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4] Length = 328 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 97/256 (37%), Gaps = 7/256 (2%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 ++ VDI ++ KF + + + + N LV T++ Sbjct: 67 TMSNRLGKMVDIKKDGARTYKFDDFLQILPSPVCMAIYKIEPLKGAALVAMDNTLVFTIV 126 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 +++LG + NR + +E +L ++ + + + + NL ++ Sbjct: 127 DSILGGTGAPSIPSNNRLFTPIELRLMEKIVKDALVDMEKAWAPLLAVKMNLLR---MEM 183 Query: 169 LKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSE 225 + N + +E+ V T+++ + IE + +L +P T ++ L S + + Sbjct: 184 NPRLVNIVPSEYQVVTMSLKIQIEETVGTMILAVPYMT-IEPVRDKLKSGMQVDMMAVDP 242 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + + + + I + TL +++ L G I +R ++ ++ G + Sbjct: 243 QWSYRLSEELAEAPLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELLVKVGGVNKF 302 Query: 286 SCELGRVGKNYTIRIT 301 + G N ++I+ Sbjct: 303 TGIPGVRDGNKAVKIS 318 >gi|224531918|ref|ZP_03672550.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116] gi|224511383|gb|EEF81789.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116] Length = 352 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 99/278 (35%), Gaps = 9/278 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + SS + ++ + V + S + I S + ++ Sbjct: 63 RTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIINMDPLK 122 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +++ L G +TI + +R L+ +E+ + + I +I A + + S Sbjct: 123 GSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMREAWSQ 181 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + E + + + + I V +P T ++ + Sbjct: 182 VVDLRPRFGHIEVNPQFAQIV--PPTEMIILVTLEVKIGKVEGLMNFCLPYIT-IEPIVS 238 Query: 213 SLSSQNK----SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS++ + + +D K + + I K ++++++L G V+ Sbjct: 239 KLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDVLNLE 298 Query: 269 HR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L KE + C +G +G +++IT++I Sbjct: 299 SSLINKDLTLKVGTKEKFKCRMGLMGNKISVQITEKIG 336 >gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 106/287 (36%), Gaps = 13/287 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + + + +S V S + Sbjct: 53 RTLQIIHDNFSGMLNTFLAGYLRTY----VQAEVLTVEELSYYEFSNSVVNPAVLSIINF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S ++ TL+E +LG + ++ R + +E L K + Q+ ++ Sbjct: 109 TPLEGQIIVDISPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLMRQVINLMID 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L+ + + N+ V I +N+ I +V + IP +++ Sbjct: 167 PWENVIELQPKLDKIETNSQFAQIVS--PNDTVALITLNLKIGDVEGMMNICIPH-IVIE 223 Query: 209 TTLISLSSQNKSENQSEDLID----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS++ N S+ + + ++ + V+I ++ T+KD + L++G V Sbjct: 224 PILDKLSTKLWFSNSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDFLELQMGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 I + + K Y G +++T + Sbjct: 284 IMLDNPVDKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDQKGDEIY 330 >gi|290475711|ref|YP_003468600.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004] gi|289175033|emb|CBJ81836.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus bovienii SS-2004] Length = 335 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 83/275 (30%), Gaps = 4/275 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + DI+ + + + + + L Sbjct: 59 ERFARQFRMGLFNMLRRSPDITVGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +LV ++NL G ++ R + E+++ R + + + Sbjct: 119 EPSLVYIAVDNLFGGDGRFPTKVEGREFTYTEQRVINRMLKLALDAYRDAWDSIFKIEVE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 ++ N N+ V T + I + F + IP + + + Sbjct: 179 YVR-SEMQVKFTNITTSPNDIVVTTPFQVEIGALCGEFNICIPFAMIEPLRERLTNPPVE 237 Query: 220 SENQSE-DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + Q E + ++ + + L ++ L+ G V+P E I Sbjct: 238 NVRQEEGQWRESLVKQVQHSELELVANFVDIPLRLSKILQLRRGDVLPIERPE--RLIAH 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G + + + G + Y +R+ IN +L Sbjct: 296 VDGVPVLTSQYGTLNGQYALRVEHLINPVLNALDE 330 >gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13] Length = 332 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 109/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + +I + L F ++ + IS S + I S + + + + Sbjct: 54 RNLTRIHENFAR----LLTTYFSAQLRTYIQISVASVDQLPYEEFIRSIPKMTILNVFEV 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + +L+ LG + ++ SL+ +E KL + Sbjct: 110 APLEGRVVLEINPTIAYAMLDRQLGGKGTGVNKVD--SLTEIETKLMTTLFEGAIENFGE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 T + P L D + + NE V I+MN+TI V + IP +L+ Sbjct: 168 AWDTIADIQPFLSDLEVNPQFLQLVS--PNETVIVISMNITIGEVTGMINICIPH-VVLE 224 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+ E +++ D + + + T + + + D++ + IG V Sbjct: 225 PVIPKLSAHYWMEEKNKVRQDHEIATLEKAIRATALTVTTELGHSEISFSDLLNITIGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +P + I+ + K + ++G+V KN ++I ++I + Sbjct: 285 LPLQQKIDEPIIVKVDNKPSFYGQVGQVKKNMAVQILEKIKEGYE 329 >gi|218886491|ref|YP_002435812.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757445|gb|ACL08344.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 326 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N I Sbjct: 60 RFARLCTNALSNTVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G + + P++ R + +E+ + R I + + + S L Sbjct: 120 SRLVFALVENFFGGAG-SQPKIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHDVSLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + +E S V+ +P T ++ L + ++ Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELETAIGSMVICLPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + VN+ K T ++ L++G V+ + Sbjct: 236 ERLEVDHAWVSRLKERLLETPVNLKIHFGESKITGNQLLRLQVGDVLLLDTDTDDLLECT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G V N +I Sbjct: 296 VQGVTKFWGISGTVKANKAFQI 317 >gi|259907613|ref|YP_002647969.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96] gi|224963235|emb|CAX54719.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96] gi|310764881|gb|ADP09831.1| Flagellar motor switch protein FliM [Erwinia sp. Ejp617] Length = 332 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 9/284 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83 ++ I + SL + + + F+ + DI+ + + + + Sbjct: 45 RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 103 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + L+ + S +V ++NL G + R + E+++ R + Sbjct: 104 NLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQ 163 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 ST + +I N N+ V T ++ I + F + IP Sbjct: 164 EAYEFAWSTIFKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPF 222 Query: 204 ETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ L+S S + + + + + T L +V+ K G Sbjct: 223 SSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKG 282 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VIP E S G +++ + G V + +++ I Sbjct: 283 DVIPLDKPE--LIAASVGGVPVFTAKYGSVNNQFALKVEQMIPS 324 >gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf] gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str. 657] gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf] gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str. 657] Length = 331 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V +++ LLG + ++ R + ++K + K+ + L Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E +E N E V I ++ + + + IP ++ Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L+ ++ + E E + +++ + + T+++ + L +G V+ Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 R + L + Y + G +GKN ++I D+I+ D +S Sbjct: 285 SLETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330 >gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str. Eklund] gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str. Eklund] Length = 331 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 106/284 (37%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V ++ + Q + IHS + + + Sbjct: 53 RTLELIHDNFARIISNYL----TAQVRTNVKVNIETVQQITYEEFIHSVPNPTILTVFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + +++ LLG S + R L+ ++K + K+ + L Sbjct: 109 PPLSGSILFETNPQFAYQIIDVLLGGSGTGQYKT--RELTDIDKNIIKQINNGLITNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E P +E N NE V I ++ + ++ + IP ++ Sbjct: 167 AWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ + + E + ++ + + + + K +++ ++L IG VI Sbjct: 225 VLDKLVVQYWFRENNVESLEGSKEKLKKRMKVVELPMSVVLGSTKLDVREFLSLCIGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + G VGKN ++I D I+ D + Sbjct: 285 TLDALTSSPVKVMVEDEPYLLAKPGIVGKNKGVQILDIIDKDVE 328 >gi|283477455|emb|CAY73371.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163] Length = 334 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 9/284 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83 ++ I + SL + + + F+ + DI+ + + + + Sbjct: 47 RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 105 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + L+ + S +V ++NL G + R + E+++ R + Sbjct: 106 NLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQ 165 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 ST + +I N N+ V T ++ I + F + IP Sbjct: 166 EAYEFAWSTIFKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSIEIGSHQGEFNICIPF 224 Query: 204 ETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ L+S S + + + + + T L +V+ K G Sbjct: 225 SSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELELVATFPDVPTRLTNVMKFKKG 284 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VIP E S G +++ + G V + +++ I Sbjct: 285 DVIPLDKPE--LIAASVGGVPVFTAKYGSVNNQFALKVEQMIPS 326 >gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 3502] gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 19397] gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str. Hall] gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str. Loch Maree] gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str. Kyoto] gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 3502] gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str. ATCC 19397] gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str. Hall] gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str. Loch Maree] gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str. Kyoto] gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402 065] Length = 331 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V +++ LLG + ++ R + ++K + K+ + L Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E +E N E V I ++ + + + IP ++ Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L+ ++ + E E + +++ + + T+++ + L +G V+ Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 R + L + Y + G +GKN ++I D+I+ D +S Sbjct: 285 ALDTRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330 >gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio yellowstonii DSM 11347] Length = 322 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 5/263 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + VD+ + KF + S + L + Sbjct: 59 ERLARSFRVSLASDIRKIVDVINVNVNITKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVF 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++ TL+E G S + + R + +E+++ + + + + + P+ Sbjct: 119 DAPMIFTLIEFYFGGSGKGYYKPEGREFTPIEQRIIHKVVMMFLESMEEAWKPIFQIKPH 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 + + V + IE ++ IP ++ +K L S Sbjct: 179 FIRTEMNPQFVTIVTPV--DVVIETEFTLEIETRECKIMVCIPYSSVEPIKEKLYSAFLA 236 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + I + V ++ + K ++ LK G ++ R L Sbjct: 237 DR-DEMDMKWIGRLKAQIKNAPVQVEAILGKVTIDFKTLLDLKSGDIVTLQRRIDEEVDL 295 Query: 278 SANGKEIYSCELGRVGKNYTIRI 300 G + +LG NY I+I Sbjct: 296 LVEGVPKFKGKLGTFKGNYAIKI 318 >gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str. Langeland] gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str. Okra] gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str. Langeland] gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str. Okra] gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str. 230613] Length = 331 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V +++ LLG + ++ R + ++K + K+ + L Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E +E N E V I ++ + + + IP ++ Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L+ ++ + E E + +++ + + T+++ + L +G V+ Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + + L + Y + G +GKN ++I D+I+ D +S Sbjct: 285 ALETKTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330 >gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. 168] gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. 168] gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. JH642] gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. subtilis str. SMY] gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5] gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis] gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus subtilis subsp. subtilis str. 168] gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto BEST195] gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus subtilis subsp. spizizenii str. W23] gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5] Length = 332 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 99/273 (36%), Gaps = 10/273 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ + IS +S + I S + + + + + Sbjct: 63 FARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + T+++ ++G + ++ SL+ +E K+ + + + P + Sbjct: 123 TIAYTMMDRVMGGIGISHNKVD--SLTEIETKIISNLFENALGNYKEAWQSIADIEPEMT 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217 +F + NE V I++N I ++ L IP +L+ + LS Q Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-IVLEPLIPKLSVHYWMQ 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + ++ + + + + T+++ ++L++G I + Sbjct: 238 SDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309 K + + GRV + ++I D I +Q Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 330 >gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b] Length = 329 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 104/275 (37%), Gaps = 10/275 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L F ++ V S S + + IHS + + + F I Sbjct: 60 EHFTRMLTTFFSAQLRTYVQFSVNSVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEV 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + N+ +L+ LLG + ++ S + +E ++ + + + + E Sbjct: 120 NPNISYAMLDRLLGGPGVEMDKIE--SFTEIEMRILTQLYKRAFSTYGDAWESIAEIKAE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + + NE V I++ +TI V+ + + +P T ++ L LSS Sbjct: 178 MSAVEVNPQFLQLVS--PNETVVLISIGVTIGEVSGTINVCLPFVT-IEPVLSKLSSHYW 234 Query: 220 S-----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 N S+ +P + V + + + T D++ L++G + K Sbjct: 235 MQEANRRNASQSSKEPLKAQLMNSTVEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEP 294 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + +++ ++G GK +++ R+ +++ Sbjct: 295 LSVMVGENKVFKGQVGVSGKRMAVQVLHRVKEEEQ 329 >gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC 2916] gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC 2916] Length = 331 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 105/286 (36%), Gaps = 11/286 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V +++ LLG + ++ R + ++K + K+ + L Sbjct: 109 PPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM--REFTDIDKNIMKQINTGLITNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E +E N E V I ++ + + + IP ++ Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L+ ++ + E E + +++ + + T+++ + L +G V+ Sbjct: 225 VLEKLVVQYWFRENDEESIEQSSSKIKERINIVSMELTAELGRTSVTVEEFLRLAVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 R + L + Y + G +GKN ++I D+I+ D +S Sbjct: 285 ALETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQILDQIDKDVESY 330 >gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus CD2] gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus CD2] Length = 329 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 95/272 (34%), Gaps = 9/272 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 Y + L + V ++ S ++ + +S V + S S + + Sbjct: 62 YARLLTNFLSGYLRTLVQVAVISVEAIAYYEFNNSISNPAVLAIVDFSPLSGSIIFEMAP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + L++ +LG + ++ R + VE + +R I Q+ ++ + P LE Sbjct: 122 PIAYALIDRILGGKGSPMEKI--REFTEVELAIIERIIIQVLNLMREPWENVIAIRPRLE 179 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + + +NE V I + I +V + IP +++ + LS++ Sbjct: 180 KIETNAQFAQIIS--ANEMVALITLGAKIGDVEGMINICIPH-MVVEPIVSKLSTKFWFS 236 Query: 222 NQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 N ++ D K V + + + D + L+ G VIP + Sbjct: 237 NSEKEKTNESKDTIELKIENTKVPVRAVLGRSTILVNDFLELQPGDVIPLDSSVSGNLEI 296 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + G I++ + + +++ Sbjct: 297 LVGDLLKFYGTPGVKKNRVAIKVNEVVRGEEE 328 >gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum ferrodiazotrophum] Length = 341 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 5/270 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + +F + V+ S S + KF I + L NF + Sbjct: 62 ERFARFFQITLSSTLRKAVEFSPVSTEMIKFGEFIKKIPLPSNINILRLEPMKRNFLLII 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +V L+++L G ++ R S +E ++ + + Q + + + Sbjct: 122 DARMVYLLVDHLFGGVGRGHVKVEGRDFSPIENRITRNILNQAIGDFEKAWAPVHHIGVS 181 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + E V + + I+ + IP T ++ L + + Sbjct: 182 YIRSEINPQFSAIVS--PTEMVIALTYRLDIDGQGRPVYICIPYST-IEPIKEKLYTGFQ 238 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAIL 277 S+ D + +V I L T L +V+ K G +I + Sbjct: 239 SDQYEVDHRWILRLRQQIDSVPIKIVAELGTTKARLSEVLAWKPGDMITLDQYVDDPIKI 298 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + G + +RI +R+ D Sbjct: 299 TVEKALRFKARPGVYRSSRAVRIEERVFPD 328 >gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH] gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH] Length = 356 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 99/284 (34%), Gaps = 6/284 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 ++ + L M V+I S + + S F+ SL Sbjct: 59 RAIHDKMARSLASDISSLMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSLKPLDGKG 118 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I + ++V +++ LLG S P R + +E L + + ++ + + S + Sbjct: 119 VIELNPSIVFPMIDRLLGGSGA--PFETTREFTDIELNLLDQILKVVTQNMKEVWSPIMD 176 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLIS 213 P +E + + NE V + M + I + + P T+ L L + Sbjct: 177 LYPIIEAKESSPNVVQIV--AQNEIVIMVIMEIIIGQTSGMMNICYPVITIESLLPRLAN 234 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + + ++ + + +K V+ L++G +I Sbjct: 235 RDLMLNETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDIIKLNRPADD 294 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 I+ +G+E + E G +I+I + + + +K L K Sbjct: 295 TVIVKVDGREKFIAEFGVRRYRRSIKIKEILKTEHDEIKEILQK 338 >gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B] gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B] Length = 329 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 107/281 (38%), Gaps = 9/281 (3%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 E+ L + + L F ++ V + + + S + + S + Sbjct: 52 ERTLQMLHENFARSLSTYFSGRLRSFVAVDLVGLDQMTYDEFVKSIRNPSYIAVFSAKEF 111 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + + +LE LLG + NR + E ++ ++ + I L Q S Sbjct: 112 VGSAILDIDLEIFFGVLEILLGGPG--MNVEINRPPTDTEIEVMRKEVVNILTNLVQAWS 169 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 T +P +E + SNE V I + + I N+ + P +L++ Sbjct: 170 TVYSFTPVIEAIET--NPQFVQIVASNEMVLVITLLLKIGNIEGYINICWP-SSLVEPIG 226 Query: 212 ISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 L++Q+ + + SE+ + + V + + TL D++ L++G VI Sbjct: 227 EKLTTQSWFKTKQKIVSEEDMKALRENLARTIVELSVAVGETNLTLWDILNLEVGDVIRL 286 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ + NGK+ + G Y ++I + ++ ++ Sbjct: 287 DTFKEDPLKIKLNGKDKFLGVPGVFKGKYAVKIVEVLDEEE 327 >gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1] gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1] Length = 331 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 13/285 (4%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 T+ I + L +L ++ V I+ + ++ I S + + S Sbjct: 54 TLSMIHENFARLLTTYLS----AQLRTVVQINVFFVEQMTYNEFIFSIPNPSLIAVVDFS 109 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + + ++ ++++ LLG E +L R + +E + ++ ++++ +L+ Sbjct: 110 PLKGAAIMEINPSIAFSIIDRLLGGPGEYSGKL--REPTEIETGIIEKVFSKMTRILSDA 167 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 + LE + + NE V I N + N + IP +L+ Sbjct: 168 WKDIADIQTTLEKLETNSQFVQLVS--PNEAVALITFNAKVGNSEGMINICIPH-IVLEP 224 Query: 210 TLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + LS++ ++ + K Y I + T+ + + L G VI Sbjct: 225 IIPKLSTRIWLSTSKQEQAETTKQFITEKVYDTKTEIRAELGRTLITVGEFINLATGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 K A + K +S +G I+I + + Sbjct: 285 ALNKNIKDGADIFIKDKLKFSGSIGVHRNKMAIKIQKKFGEGGEF 329 >gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 333 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 97/277 (35%), Gaps = 10/277 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + L + +DI S + + + S V +L N I Sbjct: 59 LHESFSRLLNTYLSASLRTMIDIEVLSVEQMTYQEFVQSMANPSVIGILALPPLKGNIII 118 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 S ++ + ++ + G P + R L+ +E + +R I ++ + S E Sbjct: 119 ELSTDISLAYIDRIFGGEGR--PGVKPRVLTDIEAAVMRRFIDTVTNYFREAWSNVVEFR 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215 PN E + ++ V I +++ + V + IP +L+ + L+ Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLITIHIKMGEVEGMMNICIPY-LVLEPVMSKLTTS 233 Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + S + + RK + +V ++ T+ + +TL G V+ K Sbjct: 234 FWVASSMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGDVLQLDTLTK 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G GK ++I+ I + Sbjct: 294 DELVCYVGSNPKFLARPGTAGKRMAVQISGIIEGEDD 330 >gi|292489155|ref|YP_003532042.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|292900273|ref|YP_003539642.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291200121|emb|CBJ47247.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291554589|emb|CBA22223.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430] gi|312173313|emb|CBX81568.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC BAA-2158] Length = 334 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 9/284 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83 ++ I + SL + + + F+ + DI+ + + + + Sbjct: 47 RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 105 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + L+ + S +V ++NL G + R + E+++ R + Sbjct: 106 NLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAQ 165 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 ST + +I N N+ V T + I + F + IP Sbjct: 166 EAYEFAWSTIFKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFFIEIGSHQGEFNICIPF 224 Query: 204 ETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ L+S S + + + + + T L +V+ LK G Sbjct: 225 SSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELELVATFPDLPTRLTNVMKLKKG 284 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VIP E S G +++ + G V + +++ I Sbjct: 285 DVIPLDKPE--LIAASVGGVPVFTAKYGSVNNQFALKVEQMIPS 326 >gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826] gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826] Length = 367 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 8/278 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L M V++ S + + S F+ S+ N + + + Sbjct: 66 ARNLASQISSVMRSIVELRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPS 125 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + +++ LLG + E NR L+ +E L + I L + S + PN+E Sbjct: 126 IAFPMIDRLLGGTGEN--FEANRELTDIEVNLLDAVLRMIMQRLKESWSMITDMYPNVEA 183 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219 + + + NE V + M + + + L P L+ L L++++ Sbjct: 184 KESSPNVVQIVS--QNEIVIMVVMEIIVGGSSGMINLCYPV-IYLEPILSRLANRDIMLG 240 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + V + + ++ + + LK G ++ AI+ Sbjct: 241 ETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRGADDKAIVCI 300 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + KE++ E+G +I+I I D+ +K+ L K Sbjct: 301 DKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKHILEK 338 >gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens DSM 7] gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens DSM 7] gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens TA208] gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus amyloliquefaciens LL3] Length = 332 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 10/273 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F K+ + IS +S + I S + + + + + Sbjct: 63 FARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + +L+ ++G T + N L+ +E + + + + P + Sbjct: 123 TIAYAMLDRVMGGIGITHNKADN--LTEIETNIISNLFENALGNYKEAWQSIADIDPEMT 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217 +F + NE V I++N I ++ L IP +L+ + LS Q Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + ++ + + + + T+++ ++L++G I + Sbjct: 238 SDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309 K + + GRV + ++I D I +Q Sbjct: 298 LVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330 >gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans ISDg] Length = 325 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 108/285 (37%), Gaps = 17/285 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I G L LP ++ +V + + ++ + ++ + Sbjct: 52 RTLDIIFEHYGRLLSTHLPAYLRK----NVQVEVINSEAVVYQEFTNALSNPVLLGIIDF 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N I + N+ +++ +LG S P +R S +E + +R ++ +L + Sbjct: 108 APLEGNIIIELAENVGYAIVDRMLGGSGN--PLEKSRDFSEIELVIIERIFTVMTNILAE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 + + +P L + + ++ + + +N+ I N+ + +P L Sbjct: 166 PWANVVKLNPRLIRIETNSQFAQIIS--PSDMASIVTLNIKIGNIEGMMNVCLPYACLEV 223 Query: 207 ----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L T + Q K ++ ++ I+ + + + + +L +++ ++ G Sbjct: 224 IIDKLNTKYWYSTMQEKGDSNYQEFIE---TAISRARIPVKAVLGKSSISLNELINMQKG 280 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +I + + + ++ G +Y ++I+ I + Sbjct: 281 DIIKLDRKIDDELSVYVGNIKKFTALPGASSDSYAVKISTIIREE 325 >gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus DSM 12680] Length = 330 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 7/273 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + + ++ V I S + + + S + SL + + Sbjct: 60 ENYSRSVSTYLSAQLRAAVQIDVLSVEQLTYDEFMRSLPNPTIMCVFSLQPLEGSAIMEI 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + NL +L+ +LG ++ R L+ +E L +R ++ + L + S E P Sbjct: 120 NPNLGFAMLDRILGGPGLPPERI--RPLTEIEITLIERLAQRMLSYLEEPWSGIIELQPV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL---ISLSS 216 ++ + + +E V I++ I +V S + IP L T ++ Sbjct: 178 MDRIESNPQFTQIVS--PSEMVVIISLESKIGDVLSLINICIPFLVLESITGKLNVNYYY 235 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + +S+D + V + I T+++++ L G VIP R Sbjct: 236 SSSVKERSKDSALVLKNRIENAMVPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLE 295 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + K + + G VG ++IT+ ++ Sbjct: 296 VVIGQKPKFRGKPGVVGNRLALKITEIVSEVDD 328 >gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT] gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT] Length = 331 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + +L ++ +V I+ + Q + IHS + + + Sbjct: 53 RTLELIHDNFARTISNYL----TAQVRTNVKINIETVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + +++ LLG S + R + ++K + K+ + A L Sbjct: 109 PPLSGSILFETNPQFAYQIIDVLLGGSGTGKYKT--REFTDIDKNIIKQINKGLIANLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E P +E N NE V I ++ + + + IP ++ Sbjct: 167 AWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNNTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ + + E + ++ + + + + T+ +TL +G VI Sbjct: 225 VLDKLVVQYWFRENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + G +GKN ++I D I+ D + Sbjct: 285 TLDSLTSSPVKVVVGNEPYLLGRPGTIGKNRGVQILDIIDKDVE 328 >gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942] gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942] Length = 332 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 96/265 (36%), Gaps = 9/265 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ + IS +S + I S + + + + + Sbjct: 63 FARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + +++ ++G + ++ SL+ +E K+ + + + P + Sbjct: 123 TVAYAMMDRVMGGIGISHNKVD--SLTEIETKIISNLFENALGNYKEAWQSIADIEPEMT 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217 +F + NE V I++N I ++ L IP +L+ + LS Q Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 ++ + ++ + + + + T+++ ++L++G I + Sbjct: 238 SERNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 K + + GRV + ++I D Sbjct: 298 LVGDKPKFLGQAGRVNRKQAVQILD 322 >gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str. 1873] Length = 331 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 105/284 (36%), Gaps = 11/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V I + Q + IHS + + + Sbjct: 53 RTLELIHDNFARIISNYL----TAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S + + +++ LLG + R + ++K + K+ + A L Sbjct: 109 PPLSGSILFETNPQFAYKVIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 + P +E N NE V I ++ + ++ + IP ++ Sbjct: 167 AWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ + + E + ++ + + + + K T+ + +TL +G V+ Sbjct: 225 VLDKLVVQYWFRENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + K + G +GKN ++I D I+ D + Sbjct: 285 TLDNLTSSPVKMMVGDKPYLLGKPGIIGKNRGVQILDIIDKDVE 328 >gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521] gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 112/282 (39%), Gaps = 11/282 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E + + + +L + +V + + + + IHS + + + + Sbjct: 53 RTLELVHDNYARIISNYL----TGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITVFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N + + +++ LLG + + ++ + S ++K + ++ + + L Sbjct: 109 PPLAGNIIFETNPQFSLQVIDILLGGNGD--RKVEAKEFSDIDKNIMRQITTGMISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 + E P +E N N+ V I ++ + ++ + IP ++ Sbjct: 167 AWESILEVEPEVEGIET--NPAINQTLAPNDPVALITFSVEMNKRSTFINMCIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ S +N E+ + + ++++V++ + T++D + L +G VI Sbjct: 225 ILDKLVVQYSFKNDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 R + + +E Y + G GKN + I D + + Sbjct: 285 KLDTRSSSPIKVYVGNEECYCAKPGVSGKNMGVMILDITDKE 326 >gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens QYMF] Length = 331 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 107/287 (37%), Gaps = 13/287 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I + + FL + V + + + +S V S + Sbjct: 53 RTLQIIHDNFSRMLNTFLAGYLRTY----VQADVLTVEELSYYEFSNSVVNPAVLSIINF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S ++ TL+E +LG + ++ R + +E L K+ + Q+ ++ Sbjct: 109 TPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLMRQVINLMVD 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P L+ + + N+ V + +N+ I +V + IP +++ Sbjct: 167 PWENVIELQPKLDKIETNSQFAQIVS--PNDTVALVTLNLKIGDVEGMMNICIPH-IVIE 223 Query: 209 TTLISLSSQNKSENQSEDLID----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS++ N S+ + + ++ + VNI ++ T+KD + L+IG V Sbjct: 224 PILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVKDFLELQIGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 I + + K Y G +++T + Sbjct: 284 IMLDNPVNKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDEKGDEIY 330 >gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC 14580] gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2] gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580] gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2] Length = 332 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 9/265 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F ++ + IS +S + I S + + + + + Sbjct: 63 FARLLTTYFSAQLRTYIQISVSSVDQVPYEEFIRSIPNMTILNLFEVRPLEGRIMMEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + T+++ ++G + ++ S++ +E K+ + E P + Sbjct: 123 TIAYTMMDRVMGGIGSSHNKID--SMTEIETKIMSNLFESCLTNYKDAWESITEIEPEMS 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217 DF + NE V I++N I +++ L IP +L+ + LS Q Sbjct: 181 DFEV--NPQFVQMVSPNETVVVISLNTQIGDISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + ++ + I + + T+++ + L+IG I + Sbjct: 238 SDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDCITLDKSVAEPLTV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 K + + GR+ + I+I D Sbjct: 298 LVGDKPKFLAQAGRMNRKTAIQILD 322 >gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM 2782] gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM 2782] Length = 328 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 109/286 (38%), Gaps = 13/286 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K+T++ I+ + L + FL + V + S + ++S +S + Sbjct: 52 KRTLQFINENYARLVQSFLSGYLRSL----VQVDVLSVDALQYSEFSNSLANPIILGIVD 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++ L++ +LG ++ ++ RS + +E + +R I QI ++ Sbjct: 108 FTPLNGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + P LE + + NE V I +N+ + V + IP T+ Sbjct: 166 EPWESIIAIKPRLEKIETNAQFAQIIH--PNEMVALITLNVVVGEVKGMINICIPHMTV- 222 Query: 208 KTTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + LS++ N + I+ K V + + ++ + + L+ G Sbjct: 223 EPIMPKLSTKLWFTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+P + ++ + G ++IT+ + ++ Sbjct: 283 VLPLDTNVNGDLEILVGDLPKFNAKPGVKKNKVAVKITEVLRREED 328 >gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM 2522] Length = 332 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 105/277 (37%), Gaps = 7/277 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L ++ V ++ S + I S + + + F I Sbjct: 60 ENYARLLTTQLSAQLRTYVQVAVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEV 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + N+ +L+ +LG E + ++ SL+ +E K+ + + L + + + P Sbjct: 120 NPNIAYAMLDRMLGGQGEALNKVE--SLTEIETKILSQLFQRSLETLREAWESVVDLDPV 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLISLSS 216 +++ + + NE V I+++ TI + + +P E++L I L Sbjct: 178 MDEIEVNPQFLQLVS--PNETVVVISLSTTIGEASGMMNICLPHVVIESILPKLSIHLWM 235 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 Q K +++ + + Q +++ + + ++ + + L VI + Sbjct: 236 QQKKKDRQPGELSALEKNLKQAPLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLL 295 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + + Y + G+V ++ITD I + +S Sbjct: 296 VKLGNEPKYYSQPGKVKGKLAVQITDSIVKEGESDDE 332 >gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228] gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20] gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228] gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20] Length = 358 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI+ I L L M V+ S + + S F+ S+ Sbjct: 54 RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++ +++ LLG ++ +R L+ +E L + I L + Sbjct: 110 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +T E P++E + + + NE V + M + I N + + P L+ Sbjct: 168 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 224 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L L++++ + + + V + + + + + LK G ++ Sbjct: 225 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 285 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 336 >gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium xylanolyticum LX-11] Length = 329 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 102/283 (36%), Gaps = 11/283 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I ++ + FL + V +S S + + +S + Sbjct: 53 RTLQMIFENMSRSFTTFLSGYLRTL----VQVSIVSVEQITYYEFSNSLTNPVFIAVIDA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + C+NN T+++ +LG + + R + +E L R Q+ ++ Sbjct: 109 KPLEGPIILECNNNTTFTIIDKILGGIGAS--ETVQRDYTEIEMGLLTRITTQLLPLIKD 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S E +P + + + NE V M++ I + +P T++ Sbjct: 167 AWSNVIELNPEITRIETNSQFTQVIS--PNETVALCTMSLKINDNEGLINFCLPHITIV- 223 Query: 209 TTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L L+++ N + D K V + I K T++D+++ G VI Sbjct: 224 PILPLLTTKTWFSNAEKQTYDIGIIKDKISNTYVPLKVVIGTSKITVRDLLSFDKGDVIE 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 R K + N + + G K Y ++IT+ + Sbjct: 284 INKRYKDPIEVKINDETKFLGVPGIRNKKYCVQITEICSEGDD 326 >gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1] gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1] Length = 333 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 110/280 (39%), Gaps = 13/280 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + + FL ++ V IS S + I S + + + + Sbjct: 53 RSLTRIHENFSRILTTFLS----AQLRTYVQISVASADQIPYEEFIRSIPKMTLLTVYEV 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + N+ T+++ +LG E+I ++ L+ +EKK+ R Q L + Sbjct: 109 PPLDGNIIMEINPNIAYTMMDRVLGGYGESINKIDK--LTEIEKKIMTRIFDQTIDQLKE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S E +P L + + + NE V I++N TI + + L +PQ +L Sbjct: 167 AWSEIIEINPFLTELEVNPQFLQMIS--PNETVVVISLNTTIGDTSGMINLCLPQ-VVLD 223 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS Q+ + + I + V + + ++D + L+IG Sbjct: 224 PMMPKLSGHYWMQHAGKEPDPNNIRLLEEGIKEAKVPLTAELGTATIKIEDFLNLEIGDC 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I + ++ + + + G+ G ++I D I Sbjct: 284 IRLNQTIEEPLVVKVDKIPKFIGQPGKQGTKMAVQILDII 323 >gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans AK-01] gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans AK-01] Length = 325 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 9/284 (3%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 G T+E ++ L ++ L + DIS KFS S Sbjct: 49 GRMPTLEVVNKRLARMFSSSLSATMRGA----ADISVRDTNMIKFSEFQSSIPVPANIHM 104 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 + + + LV L+E G + ++ R + +E ++ ++ + Sbjct: 105 FKMEPLRGHALLVVDTPLVFQLIEYYFGGTPGGALKVEGRDFTRIENQIIRKVVGIFLKD 164 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 + + P +++ + + + + +E L IP Sbjct: 165 FDDAWAPIFPIKPVYVR-SEMNPQFAVIGLPIDLMII-VRFQVELETTEGGMTLAIPYS- 221 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQ 263 +L+ L S +S+N D ++ V ++ + L T + +++L+ G Sbjct: 222 MLEPIRDKLYSGFQSDNLEADASWRKRVESQVQEVLVEICVELGTAVITAERLMSLRKGD 281 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 VI G + + G V + I + RI D Sbjct: 282 VISLDQFADEPLTAKIQGVPKIAGKAGVVKGSKAIAVEGRITMD 325 >gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541] gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541] Length = 333 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 97/277 (35%), Gaps = 10/277 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + L + +DI S + + + S V +L N I Sbjct: 59 LHESFSRLLNTYLSASLRAMIDIEVMSVEQMTYQEFVQSMGNPSVIGIIALPPLKGNIII 118 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 ++ ++ + G + P + +R+L+ +E + +R I + + S E Sbjct: 119 EVGTDIAFAYIDRIFGGEGK--PGVKSRALTDIEAAVMRRFIDTVINYFREAWSNVIEFR 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215 PN E + ++ V I +++ + +V + IP +L+ + L+ Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLITIHVKMGDVEGMMNVCIPY-LVLEPVMSKLTTS 233 Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + + + + + RK + V + T+ + +TL G V+ + Sbjct: 234 FWVASSVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGDVLQLDTLAQ 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G GK ++I+ I D Sbjct: 294 DELVCYVGTNPKFRAHPGTAGKRMAVQISGIIEGDDD 330 >gi|116328061|ref|YP_797781.1| flagellar motor switch protein FliM [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331486|ref|YP_801204.1| flagellar motor switch protein FliM [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120805|gb|ABJ78848.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125175|gb|ABJ76446.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 341 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 108/292 (36%), Gaps = 17/292 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ + + L L ++ V + S + I S + ++ Sbjct: 53 RTLQMMHETFARLATTGLS----AQLRALVSVHVASVDQLTYEEFIRSIPNPTTLAVINM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + ++ T+++ L G E +R LS +E + + I +I + + Sbjct: 109 DPLRGSAILEIDPSISFTIIDRLFGGKGE--QAKISRELSEIEMSVMEGIIVRILGNMRE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST + P L + + N+ V I + I V L IP T ++ Sbjct: 167 SWSTVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKIGEVEGMTNLCIPYIT-IE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+Q + + +D + Q+ + + + ++ D + L +G V Sbjct: 224 PIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIPLIAEVGSVDVSINDFMNLSVGDV 283 Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + + ++ I+ ++ + C GRVG I+I DR+ + L Sbjct: 284 VKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQIGDRV---EDIPDELL 332 >gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. doylei 269.97] gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. doylei 269.97] Length = 359 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI+ I L L M V+ S + + S F+ S+ Sbjct: 55 RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++ +++ LLG ++ +R L+ +E L + I L + Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +T E P++E + + + NE V + M + I N + + P L+ Sbjct: 169 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 225 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L L++++ + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337 >gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221] gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 260.94] gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 84-25] gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81-176] gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81116] gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 1336] gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221] gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 260.94] gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni HB93-13] gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 81-176] gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 84-25] gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 1336] gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni IA3902] gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni M1] gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni S3] gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 305] gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp. jejuni 327] Length = 359 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI+ I L L M V+ S + + S F+ S+ Sbjct: 55 RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++ +++ LLG ++ +R L+ +E L + I L + Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +T E P++E + + + NE V + M + I N + + P L+ Sbjct: 169 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 225 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L L++++ + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337 >gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137 str. F0430] gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137 str. F0430] Length = 334 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 10/277 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + L + V+I S + + + S V +L N I Sbjct: 59 LHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPAVIGIIALPPLKGNIII 118 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 ++ ++ + G + P + +R+L+ +E + +R I + + S E Sbjct: 119 EVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFREAWSNVVEFR 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215 PN E + ++ V + ++M + +V + IP +L+ + L+ Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLVTIHMKLGDVEGMMNICIPY-LVLEPVMSKLTTS 233 Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + S D + RK + V + T+ + +TL G V+ K Sbjct: 234 FWVAASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAK 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G GK ++I+ I D+ Sbjct: 294 DELVCYVGTNAKFRAYPGTAGKRMAVQISGIIEGDED 330 >gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] Length = 359 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI+ I L L M V+ S + + S F+ S+ Sbjct: 55 RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++ +++ LLG ++ +R L+ +E L + I L + Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +T E P++E + + + NE V + M + I N + + P L+ Sbjct: 169 SWATVTEIYPSIEAKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLE 225 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L L++++ + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 AI+S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337 >gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM 5692] gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM 5692] Length = 336 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 81/260 (31%), Gaps = 4/260 (1%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 ++ V + + ++ F + + +E + S S + L LL Sbjct: 71 SMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLLIFDCPLSFCLL 130 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 E + G + E + +R L+++E + K + E NL Sbjct: 131 EVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELKTNLVQAEINPR 190 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL--KTTLISLSSQNKSENQSED 226 L + V ++ N+ L+IP + K L + + + + Sbjct: 191 LVSIVS--PETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRMFDVITVSGGQA 248 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + ++ + + T+++++ LK G +I + + K + Sbjct: 249 WTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQRVLVEQKPKFQ 308 Query: 287 CELGRVGKNYTIRITDRINF 306 G +RIT Sbjct: 309 AVAGTRKGKKAVRITGTTGQ 328 >gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum H10] gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum H10] Length = 328 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 108/286 (37%), Gaps = 13/286 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K+T++ I+ + L + FL + V + S + ++S +S + Sbjct: 52 KRTLQFINENYARLVQSFLSGYLRSL----VQVDVLSVDALQYSEFSNSLANPVILGIVD 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + + ++ L++ +LG ++ ++ RS + +E + +R I QI ++ Sbjct: 108 FTPLNGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + P LE + + NE V I +N+ + V + IP T+ Sbjct: 166 EPWESIIAIKPRLEKIETNAQFAQIIH--PNEMVALITLNVVVGEVKGLINICIPHITV- 222 Query: 208 KTTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + LS++ N + ++ K V + + ++ + + L+ G Sbjct: 223 EPIMPKLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+P + + + G I+IT+ + ++ Sbjct: 283 VLPLDTNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREED 328 >gi|78357750|ref|YP_389199.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220155|gb|ABB39504.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 326 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N I Sbjct: 60 RFARLCTNALSNAVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G + + P++ R + +E+ + R I + + E + L Sbjct: 120 SRLVFALVENFFGGAG-SQPKIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHEVNLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + +E+ S V+ +P T ++ L + ++ Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELESAIGSLVMCLPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + V + R K T ++ LK+G V+ + Sbjct: 236 ERLEVDHAWVARLKERLLETPVEMKIRFGETKITGNQLLRLKVGDVLLLDTDTDDLLEGT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G + G V N ++ Sbjct: 296 VEGVRKFWGISGIVKANKAFQV 317 >gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus HTCC2516] gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus HTCC2516] Length = 316 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 88/277 (31%), Gaps = 8/277 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 Y L K + D++ S + + + + + WS N + S Sbjct: 39 RYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSGLPAPSLSALTTATPWSGNVLMTLS 98 Query: 101 NNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 +L+ ++LE +LG RS + +E++ R I +Q E S Sbjct: 99 PDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFGGRLARMILDEFSQSFRQLSEVSFE 158 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQ 217 ++ + S + +++T+ + +IP L ++ L Sbjct: 159 IDSLES--APETIAIAPSGSPAVWVTLDLTVGERGGALYFLIPYTALDTVRPVLNQPFLG 216 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 K K V + ++ + +++ + + GQ I + + Sbjct: 217 GKIGG-DTSWRKDLEEKIEDTTVTLTASLHRLRVPVQEALGWRKGQTIDLGISAEQPVDV 275 Query: 278 SANGKEIYSCELG-RVGKNYTIR-ITDRINFDQKSLK 312 + ++ ++G R +R I + + Sbjct: 276 VCGERRMFRGQMGRRATGQVALRLIEEDTGTEADDAD 312 >gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp. fetus 82-40] gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp. fetus 82-40] Length = 363 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 105/278 (37%), Gaps = 8/278 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L M V+I S + + S F+ S+ N + + + Sbjct: 65 ARNLASQISSIMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 124 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + +++ LLG + + NR L+ +E L + + L + S + PN+E Sbjct: 125 IAFPMIDRLLGGNGDGFES--NRELTDIEINLLDAILRIMMQRLKESWSMITDMYPNVEA 182 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219 + + + NE V + M + I N + + P L+ L L++++ Sbjct: 183 KESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMINICYPV-IYLEPILSRLANRDIMLG 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + V + + ++ + + L+ G ++ AI+ Sbjct: 240 ETSAKKSRNKELKTLIGRAEVLYEAILGRTVISVNEFLNLQEGDILRLDKSADDKAIVCI 299 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + K+++ ++G +I+I + I D+ +KN L + Sbjct: 300 DKKDVFLAQIGLHRFRKSIKIEELIKTDKDEIKNILEQ 337 >gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio peptidovorans DSM 11002] Length = 334 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 100/281 (35%), Gaps = 13/281 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + I+ I S L + + V S + + S + V + Sbjct: 54 RAIQMIHESFSRQLTTSLSTMVRSI----VTCEVASVDQVAYEEFVRSMVQPTVMGVLEM 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + NLV +++ LLG E + R L+ +E + +R ++ +L Sbjct: 110 YPLEGNAVVEMNPNLVFAIIDRLLGGKGEVFGKP--RDLTDIESTVIERVFMRMLELLED 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST + + + + + V + + ++I +V L IP + + Sbjct: 168 SWSTVIDVRFRFDSMESNPFFVQIC--PGTDMVLLVTLRVSIGDVEGMVSLCIPYFVM-E 224 Query: 209 TTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LSSQ + +N+ +D + V + + +L DV+ L++G V Sbjct: 225 PVMDKLSSQIWFASTGKNKDQDHRGFLTASLGTVKVPVHLELGDTVLSLFDVMRLRVGDV 284 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I + + ++ G V Y++ + + + Sbjct: 285 IRLDSMLDDPVRVRVGSRIKFTGRPGTVDGRYSVEVLEVAD 325 >gi|300024614|ref|YP_003757225.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526435|gb|ADJ24904.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium denitrificans ATCC 51888] Length = 322 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 96/283 (33%), Gaps = 17/283 (6%) Query: 46 LPKIFKEKMDL----DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 LP++ E++ V + + N W + + Sbjct: 40 LPRVMVEELGSVSSFPVKARLLDLSASTIGESCN-LPPNTYAGVVRAERWRNWLYFISDP 98 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 L +E+ LG L R L+ + + + +++ L+ S + +L Sbjct: 99 TLTALFVESALGCEGLPPTGLTERRLTKTDANILRVMFRRVTRALSHAFSILVDVQLDLG 158 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL--------IS 213 D D ++ ++ V + + + ++IPQ + + Sbjct: 159 DVV--DKIELEPQLSTSSPVISARLAIEYFGQTGILTIVIPQAAIEPVRDLLAVASAGEA 216 Query: 214 LSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + S +D + + + + ++ + + +L +V +G V+ Sbjct: 217 VGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILEERPISLGEVQRFAVGSVVELTSTS 276 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 L A+ ++ CELG+ T+RI D + +++++ F Sbjct: 277 LARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQNKETIDEF 319 >gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum DSM 6946] gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 102/274 (37%), Gaps = 8/274 (2%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + L M V+I S + + S F+ S+ N I + Sbjct: 62 MARNLASQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCIIEINP 121 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 ++ +++ LLG E+ R L+ +E L + I L + + + P +E Sbjct: 122 SIAFPMIDRLLGGLGESYE--ATRELTDIELNLLDAILRIIMQRLKEGWAPITDMYPAIE 179 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN--- 218 + + + NE V + M + I N + L P L+ L L++++ Sbjct: 180 TKESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMINLCYPV-IYLEPILSRLANRDIML 236 Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + V + I + ++ +++ LK G ++ AI+ Sbjct: 237 GETSAKKSRNKELNTLISRAEVFNEAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVM 296 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + KE++ E+G + +I+I + D+ +K Sbjct: 297 IDKKELFLAEIGLHRFHKSIKIERLVKTDKDEVK 330 >gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens FZB42] gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42] Length = 332 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 10/273 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L F K+ + IS +S + I S + + + + + Sbjct: 63 FARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNP 122 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 + +L+ ++G T + SL+ +E + + + + P + Sbjct: 123 TIAYAMLDRVMGGIGITHNKAD--SLTEIETNIISNLFENALGNYKEAWQSIADIDPEMT 180 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQ 217 +F + NE V I++N I ++ L IP +L+ + LS Q Sbjct: 181 EFEV--NPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPH-VVLEPIIPKLSVHYWMQ 237 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + ++ + + + + T+++ ++L++G I + Sbjct: 238 SDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDCITLDKSVTDPLTV 297 Query: 278 SANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309 K + + GRV + ++I D I +Q Sbjct: 298 LVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330 >gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus YK9] Length = 333 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 109/311 (35%), Gaps = 17/311 (5%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59 ++ + K R D +++ +I + +L F ++ V Sbjct: 27 LKKEDTQKKVRAYD---FKRAVRFSKDHIRSLTRIHENFAR----YLTTYFSAQLRTFVQ 79 Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 IS + + I S + + + + N+ +L+ LLG Sbjct: 80 ISVVDVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDRLLGGQGTAP 139 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ +L+ +E + +R ++ L + T + SP LE + + NE Sbjct: 140 SKMN--ALTEIEMTVLERIFSRAFESLQEAWKTVIDISPKLEALETNPQFMQIVS--PNE 195 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKT 235 + I+++ I + L IP +++ + LS ++ +++S + ++ ++ Sbjct: 196 TIALISLSTKIGDTTGMINLCIPH-VVIEPIMPKLSVHHWFVSQKKSRSPEEVEVLEQRV 254 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + + I + + + + L G VI + K + G + Sbjct: 255 NRAQLPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIGSPGSIKDR 314 Query: 296 YTIRITDRINF 306 +++ + ++ Sbjct: 315 VAVQVDEIVSE 325 >gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399] gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399] Length = 334 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 10/277 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + L + V+I S + + + S V +L N I Sbjct: 59 LHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPSVIGIIALPPLKGNIII 118 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 ++ ++ + G + P + +R+L+ +E + +R I + + S E Sbjct: 119 EVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFREAWSNVVEFR 176 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-- 215 PN E + ++ V + ++M + +V + IP +L+ + L+ Sbjct: 177 PNFETMETNPQFAQIV--PPSDMVVLVTIHMKLGDVEGMMNICIPY-LVLEPVMSKLTTS 233 Query: 216 ---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + S D + RK + V + T+ + +TL G V+ K Sbjct: 234 FWVASSVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGDVLQLDTLAK 293 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G GK ++I+ I D+ Sbjct: 294 DELVCYVGTNAKFRAHPGTAGKRMAVQISGIIEGDED 330 >gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267] Length = 367 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 106/278 (38%), Gaps = 8/278 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L M V+I S + + S F+ S+ N + + + Sbjct: 64 ARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 123 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + +++ LLG + E +R L+ +E L + + L + S + PN+E Sbjct: 124 IAFPMIDRLLGGNGE--GFEASRELTDIEVNLLDAILRMMMQRLKESWSMITDMYPNVEA 181 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219 + + + NE V + M + + N + + P L+ L L++++ Sbjct: 182 KESSPNVVQIVS--QNEIVIMVVMEIIVGNSSGMINICYPV-IYLEPILSRLANRDIMLG 238 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + V + + ++ + + LK G ++ AI++ Sbjct: 239 ETSAKKSRNKELKTLIGRAEVLYEAILGKSVVSVNEFLNLKEGDILRLDRSANDKAIVTI 298 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + KE++ E+G +IRI + I D+ +KN L + Sbjct: 299 DKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 336 >gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319] gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319] Length = 333 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 105/274 (38%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L +F ++ V +S S + I S + + + ++ + + Sbjct: 61 ENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIAVPPLEGHIIMEV 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + N+ +L+ LLG E+ ++ N L+ +E L + + + + + S+ E P Sbjct: 121 NPNIAYAMLDRLLGGQGESGEEISN--LTEIETSLVRNLLEKTLDSMREAWSSIAEIEPE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +F + + NE V I++N+ I + L IP T L+ + LS Sbjct: 179 TSEFEVNPQFLQVIS--PNEIVIVISLNVQIGDETGMINLCIPHVT-LEPIVSKLSVHYW 235 Query: 220 SENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ ++ ++ + + + + +++D + L G VI Sbjct: 236 MQSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDVIRLQTSVHNPL 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + G+V + ++I D + + Sbjct: 296 TIYVGEQPKFIAQPGKVSRKVAVQILDDVKRRNE 329 >gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum Ice1] Length = 331 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 9/278 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L + V IS S + I S + + ++S + N + Sbjct: 59 ENYCRSLTTYLAANLRTLVQISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 N+ +++ L G + ++ R L+ +E+ + +RT ++ + + Sbjct: 119 HPNIAFAVIDRLFGGTGNPPDKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKAR 176 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-- 217 LE + E V I + I +V + +P LL+ + LS+ Sbjct: 177 LEMIETNPQFIQIV--APTEMVVVITLACKIGDVEGMINICLPY-ILLEPIISKLSAHFW 233 Query: 218 --NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 N ++ ++ + ++ + + V I + ++ +++ L++G VI +R + Sbjct: 234 FSNAAKERTTEQLEALRNRLERALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSEL 293 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + + Y G G I+IT ++ Sbjct: 294 EVLIGQRVKYLARPGLSGSKLGIQITATYEKGVETDDE 331 >gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168] Length = 334 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 105/282 (37%), Gaps = 13/282 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T+E I + + L + + VD S + + I S E + + Sbjct: 52 MRTLEMIHENFARILTTTLSTQLRSR----VDFEVASIEQLTYEEFIRSLPEPTIIGISE 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + ++ F + ++ +++ L G P R+ + +EK + ++ I+ + L Sbjct: 108 MEPFNGQFIFEINPDIGFAIIDRLFGGMGN--PLDRVRTYTDIEKVVLRKVISWFLSGLP 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + P L + + SN+ I M+ I N + IP ++ Sbjct: 166 EAWENIIRVKPRLREIESNPQFTQVV--PSNDMTILITMSAKIANSEGLVNVCIPY-IMI 222 Query: 208 KTTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + L++Q N E+ + +K + + + + + T+ D++ L+ G Sbjct: 223 EPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDLLYLQPGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 VI + + + + G K+ ++ITD I+ Sbjct: 283 VIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324 >gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM 684] gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM 684] Length = 329 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 98/267 (36%), Gaps = 3/267 (1%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L ++ V + S S ++ +IH + ++ SL N + + Sbjct: 66 FARNLSFSLSNRLQRAVSVLRESISSMEYETLIHECSNHELYGILSLDPLKKNGLLIFDS 125 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 ++ +E +LG E L R ++T+E + K I + LN+ S + +L Sbjct: 126 SISFAQVEIMLGGVAEHSGDLPQRGMTTIETNILKEVIRESCLELNKAFSPIEGLESDLV 185 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 L + V + I ++ L+IP + L L S+ + Sbjct: 186 RVESNPRLVTIVPADTEMMVAA--FRVKINEISGLLRLVIPYSS-LDPIREKLKSELGAS 242 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 A + ++V + ++ +++++ L++G ++ + G Sbjct: 243 GPGGQWRSHLAHEVEDMDVAVSAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEG 302 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQ 308 K +S G +R+ +R++ + Sbjct: 303 KGKFSGLAGLRDGKKAVRVLERLHRRR 329 >gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ] gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ] Length = 331 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 95/260 (36%), Gaps = 6/260 (2%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 ++ V+I +S KF + + + L I ++L ++ Sbjct: 67 TLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALIAMDSSLAFAIV 126 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 +++LG + T L NR +T+E +L + +A + A L + + + +L Sbjct: 127 DSVLGGTSRTALAL-NRLFTTLELRLVEMVLADVLADLEKSWAPLYPAKLSLLRMEMNPR 185 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSED 226 L V T+ + + IE + + ++P T ++ L + + Sbjct: 186 LVTIV--PPEYQVVTMTVKVHIEENVGTMIFVVPIMT-IEPIRDKLKEGMQFDLMAIDPQ 242 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + + + + +L++++ L++G I + ++ G Y Sbjct: 243 WSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELLVKVEGVPKYQ 302 Query: 287 CELGRVGKNYTIRITDRINF 306 G N ++I+D I+ Sbjct: 303 GIPGIRHGNKAMQISDIIST 322 >gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM 5501] gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM 5501] Length = 333 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 100/278 (35%), Gaps = 9/278 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L ++ + + S + + I S + + S + + F + Sbjct: 61 ENFARLLNTSLSTQLRTMIHVELNSIEQLSYDEFIRSLPQPTIMSICDFNPLAGEFILEI 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++E L G + R + +E+ + K+ + Q + + + P Sbjct: 121 NPRLGYAIVERLFGGQGTPPNNI--RDFTDIEEMVLKKVLKQNLSAFVEAWENVIDLKPR 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +++ + N+ V + I + IP +L+ + L++Q Sbjct: 179 IKNLESNPQFTQIV--PGNDMVILATFDAKIAEAEGLINVCIPY-IVLEPIVSKLNAQYW 235 Query: 220 S----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ S + ++ + + + + + T+ D++ L+ G VI + A Sbjct: 236 FSTSRDSASSEELNKLKDRLSKAKLPVIANLGTTNITVADLLDLQPGDVIRMDQKATKEA 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 ++ KE + + G VG I I+ ++ ++ Sbjct: 296 VVKVGNKEKFIGKPGVVGSKLAIEISSVLDKEEAVEDE 333 >gi|24214781|ref|NP_712262.1| flagellar motor switch protein FliM [Leptospira interrogans serovar Lai str. 56601] gi|45657699|ref|YP_001785.1| flagellar motor switch protein FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195784|gb|AAN49280.1| flagellar motor switch protein FliM [Leptospira interrogans serovar Lai str. 56601] gi|45600939|gb|AAS70422.1| FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 341 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 108/292 (36%), Gaps = 17/292 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ + + L L ++ V + S + I S + ++ Sbjct: 53 RTLQMMHETFARLATTGLS----AQLRALVSVHVASVDQLTYEEFIRSIPNPTTLAVINM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + ++ T+++ L G E +R LS +E + + I +I + + Sbjct: 109 DPLRGSAILEIDPSISFTIIDRLFGGKGE--QAKISRELSEIEMSVMEGIIVRILGNMRE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST + P L + + N+ V I + I V L IP T ++ Sbjct: 167 SWSTVIDLRPRLGNIETNPQFAQVV--PPNDMVVLITLETKIGEVEGMTNLCIPYIT-IE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+Q + + +D + Q+ + + + ++ D + L IG V Sbjct: 224 PIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIPLIAEVGSVDVSINDFMNLSIGDV 283 Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 + + ++ I+ ++ + C GRVG I+I +R+ + L Sbjct: 284 VKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQIGERV---EDIPDELL 332 >gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551] gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551] Length = 328 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 105/269 (39%), Gaps = 9/269 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L +F ++ V +S S + I S + + + ++ + + Sbjct: 61 ENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIAVPPLEGHIIMEV 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + N+ +L+ LLG E+ ++ N L+ +E L + + + + + S+ E P Sbjct: 121 NPNIAYAMLDRLLGGQGESGGEISN--LTEIETSLVRNLLEKTLDSMREAWSSIAEIEPE 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 +F + + NE V I++N+ I + L IP T L+ + LS Sbjct: 179 TSEFEVNPQFLQVIS--PNEIVIVISLNVQIGDETGMINLCIPHVT-LEPIVSKLSVHYW 235 Query: 220 SENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ ++ ++ + + + + +++D + L G VI Sbjct: 236 MQSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDVIRLQTSVHNPL 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + + + G+V + + ++I D + Sbjct: 296 TIYVGEQPKFIAQPGKVSRKFAVQILDDV 324 >gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95] Length = 359 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 107/276 (38%), Gaps = 9/276 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I S +L + VD+ Y S FS S S Sbjct: 56 RTLQLIHESFARELSTYLS----GRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFSS 111 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 ++S + + +L +++ LLG T+ ++ R + +E + ++ A + +L++ Sbjct: 112 EAFSGSAILQMGLDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLSK 169 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S +E NLE+ + NE I +++TI+NV L P +L Sbjct: 170 SWSNIEEFDANLENLET--NPQFVQVAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLEP 227 Query: 209 TTL-ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 ++ S +E+ + + +N+ + + L D + L++G VI Sbjct: 228 LNDKLTTRMWTTSYRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIRL 287 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L + I+ +G+ Y+++I ++ Sbjct: 288 DSFYDEPIDLEIEERPIFKVNVGKSKGFYSVKIVEK 323 >gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32] gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32] Length = 328 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 93/255 (36%), Gaps = 7/255 (2%) Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109 ++ V+I + KF + S + + I + V T+++ Sbjct: 68 MSNRLGKMVEIKKVGARPYKFDDFLQSLPSPVCMAIYKIEPLKGAALIAVDSTFVYTVVD 127 Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169 ++LG NR + +E +L ++ I + A + + + NL ++ Sbjct: 128 SILGGVGVPNIPANNRLFTPIELRLVEKIIRDVLADMEKAWAPLLAVKMNLLR---MEMN 184 Query: 170 KKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSED 226 + N + E+ V T+++ + IE S +L +P T+ L S + + Sbjct: 185 PRLVNIVPPEYQVVTMSLKIQIEETVGSMILAVPYMTV-DPIRDKLKSGLQVDMMAVDPQ 243 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + + + I + TL +++ L G + + ++ G + + Sbjct: 244 WSIRLSEELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELLVKVGGVKKFM 303 Query: 287 CELGRVGKNYTIRIT 301 G G N ++I+ Sbjct: 304 GLPGVRGGNKAVQIS 318 >gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp. ATCC 49242] Length = 314 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 99/272 (36%), Gaps = 5/272 (1%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 + +E ++ V +S + + + + + S+ F + + Sbjct: 44 FTRALEEFTNIPVALSLEDLDAKRVGDLQEHCEGLSSILVYDANGLSAKFAVAVDSGFRD 103 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 +E LLG+ +R+ S VE +L + ++ L ++ E + Sbjct: 104 MAVEMLLGSGVVERSDKTDRAASRVEARLVNFAVNRLLNRLAAALAPVAEVQFEQDMLAS 163 Query: 166 IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 R + + +++P+ L +LS +E + Sbjct: 164 EAGYGAVGQRGA--VAIACRFRLKSLEHEGLVAIVLPRAA-LDPYRTALSRFPGAEGVAR 220 Query: 226 D--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 D + + V ++ +I + TL+D+ L++G V+ + + + G+ Sbjct: 221 DERWSENLYDNIVRTEVAVNVKIEARGFTLEDIANLEVGDVLGLPIAPTSPIRIESEGRT 280 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 ++ C LG+ +YT+R+ D + Q ++N L Sbjct: 281 LFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312 >gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 332 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 103/286 (36%), Gaps = 15/286 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 KT+ I + + +L + +I +S + + +S + + + Sbjct: 53 KTLSIIHDNYARVLSTYLSGYLRVIT----EIEVSSVEELSYYEFNNSISNPAMIAVVNF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + S+ L T+++ +LG NR S +E + + + I ++ Sbjct: 109 EPLPGQIILETSSKLAYTMIDRILGGDGLYDE--ENRDFSEIELIILSKLVRNIVGYFSE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E SP LE + + NE V I +++ I V + +P +L+ Sbjct: 167 AWENVIELSPYLEKIEPNSQFAQIVS--PNETVALITLSVKIGEVEGLMNICLP-NIVLE 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNV---NIDTRINLKK--TTLKDVVTLKIGQ 263 + +LS+ ++ D +K + NV ++ + T++D + +++G Sbjct: 224 PIIQNLSTNFLFSGIKKEF-DEKGKKNLESNVKKAKLEAVAIIGDTFITVEDFIFMQVGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 VI + L GK Y G KN +I I + Sbjct: 283 VIKLNKKVDEELELKVAGKTKYLGYPGTYKKNMAFKINKVIEKGDE 328 >gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM 2228] Length = 335 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 13/277 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T++ I +L L+ L + V+ S + +S IHS E + + Sbjct: 52 MRTLQMIHENLSRLFTTTLSTKLRSM----VNFEVASIEQLSYSEFIHSLPEPTIIGISK 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L F + + +++ L G P RS + +E+ + KR + + + Sbjct: 108 LEPLEGQFIFEINPEVGFAVIDRLFGGLGN--PIDDIRSFTDIEQVVIKRVMNWLLGDFS 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + P L + + ++ I ++ I + +P +L Sbjct: 166 EAWENISKLKPKLLELESNPQFTQIVPD--SDMTIIITLSARIGGSEGLMNICLPY-IML 222 Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + +L++Q E Q+ + I ++ + V +D + + T++D + L+ G Sbjct: 223 EPIVSNLNAQYWFSSTREKQTPEHIAKLRKRLNEALVEVDAVLGSTEITVEDFLYLQPGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 V+ + + A L Y +G + I+I Sbjct: 283 VVRLDKKVEENAELKIGRSRKYEAVVGNKNNHKAIQI 319 >gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem] gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem] Length = 325 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 8/244 (3%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF + + + I LV T+++++LG S PQ NR + Sbjct: 86 KFGDFLSVLPNPVCMAIYKMDPLKGAALIAFDATLVFTIVDSILGGSG-VQPQGMNRLFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMN 187 ++E +L ++ + A L + + +S NL ++ + N + E+ V T++M Sbjct: 145 SIELRLVEKIVKDALADLEKAWAPLCPASMNLLR---LEMNPRLVNIVPPEYQVVTMSMK 201 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245 + IE S +L IP T ++ L + + + D + + +++ Sbjct: 202 IQIEETVGSMILAIPFLT-IEPIRDKLKRGVQMDMMAVDPFWSYRLSEELMGAPMDLSVE 260 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L D++ L G I K + G + + G G N ++IT +N Sbjct: 261 MGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALN 320 Query: 306 FDQK 309 + Sbjct: 321 AGGE 324 >gi|296103632|ref|YP_003613778.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058091|gb|ADF62829.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 330 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 98/286 (34%), Gaps = 11/286 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83 ++ I + SL + + + F+ + DI+ + + + + Sbjct: 43 RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSPDITAGNIKIQPYHEFARNLPVPTNL 101 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + L+ + S LV ++NL G + R + E+++ R ++ Sbjct: 102 NLLHLNPLRGTSLMAFSPGLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLSMAR 161 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 S+ + +I N N+ V T ++ I + F + IP Sbjct: 162 EAYEFAWSSIYKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSVEIGSHRGEFNICIPF 220 Query: 204 ETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 T ++ LS+ ++ ED A + + + + R T L V+ +K Sbjct: 221 ST-IEPLRELLSNPPMDNSRHEDSHWRGLLASQMRETELELTARFADIGTRLSRVMQMKK 279 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G +I +E S G +++ G V Y +++ I Sbjct: 280 GDIIALDKQE--FIEASVGGVPVFTARYGAVNNQYALKVEQMIQPS 323 >gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB 8052] gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB 8052] Length = 332 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 110/282 (39%), Gaps = 11/282 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + + + + IHS + + + + Sbjct: 53 RTLELIHDNYARIISNYL----TGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + S + + +++ LLG + + + + ++K + ++ + + L Sbjct: 109 APLSGTIIFETNPQFSLQVIDVLLGGKGD--RKAQAKEFTDIDKNIMRQVTTGMISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--- 205 + E P +E N N+ V I ++ + ++ + +P + Sbjct: 167 AWDSVLEVEPEVETIET--NPAINQTLSPNDPVALITFSVEMNKRSTFINMCLPYLSVEK 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 +L ++ + +N +E + + + +++V I + T+ D + L +G VI Sbjct: 225 ILDKLVVQYAFKNDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ + + +E Y + G VGKN + I D + + Sbjct: 285 KLDNKSSSPIKVYVGNEECYYAKPGVVGKNAGVMILDITDKE 326 >gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277] Length = 368 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 106/278 (38%), Gaps = 8/278 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L M V+I S + + S F+ S+ N + + + Sbjct: 65 ARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 124 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + +++ LLG + E +R L+ +E L + + L + S + PN+E Sbjct: 125 IAFPMIDRLLGGNGE--GFETSRELTDIEVNLLDAILRMMMQRLKESWSMITDMYPNVEA 182 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219 + + + NE V + M + + N + + P L+ L L++++ Sbjct: 183 KESSPNVVQIVS--QNEIVIMVVMEIIVGNSSGMINICYPV-IYLEPILSRLANRDIMLG 239 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + V + + ++ + + LK G ++ AI++ Sbjct: 240 ETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVNEFLNLKEGDILRLDRSANDKAIVTI 299 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + KE++ E+G +IRI + I D+ +KN L + Sbjct: 300 DKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKNILEQ 337 >gi|295097219|emb|CBK86309.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 330 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 104/286 (36%), Gaps = 12/286 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKM----DLDVDISYTSCQSGKFSHIIHSFKENFVF 83 ++ I + SL + + + F+ + DI+ + + + + Sbjct: 43 RRVIRERLHSL-EIINERFARQFRMGLFNLLRRSSDITAGNIKIQPYHEFARNLPVPTNL 101 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + L+ + S+ LV ++NL G + R + E+++ R + Sbjct: 102 NLLHLNPLRGTALMAFSSGLVFMAVDNLFGGDGRFPTKADGREFTPTEQRVIHRMLTMAR 161 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + +I N N+ V T ++ I + F + IP Sbjct: 162 EAYEFAWGSIYKIKTEYIR-SEIQVKFTNITSSPNDVVVTTPFSVEIGSHRGEFNICIPF 220 Query: 204 ETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 T+ L+ L + N S ++ + A + + + + + T L +V+ +K Sbjct: 221 STIEPLRELLSNPPMDN-SRHEDSEWRSMLASQMRETELELVAQFADINTRLSNVMKMKK 279 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G +IP +E A + +++ + G V Y +++ DR+N Sbjct: 280 GDIIPLDKQEFIEANV--GSVPVFTAKYGSVNNQYALKV-DRMNQP 322 >gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC 35580] gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC 35580] Length = 344 Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 14/282 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T+ + + L L + + V S + I S + + Sbjct: 52 MRTVSIMHETFARLTTTALSAQLRSMAHVHV----ASVDQLTYEEFIRSIPTPTTLAVIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + ++ ++++ L G + ++ R L+ +E + + I +I A + Sbjct: 108 MDPLKGNAVLEIDPSVTFSIIDRLFGGTGQSTMV--QRELTDIEASVMEGVIVRILANMR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L + +E V + + + IP T + Sbjct: 166 EAWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYIT-I 222 Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + LSSQ + + + K +++++ + K ++DV+ L+ G Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLKEKLSTVDMDVVAEVGSLKLPVRDVLNLRAGD 282 Query: 264 VIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 V+ R LS ++ + C+ G VG ++I ++I Sbjct: 283 VVRLTDTRVGHPFTLSVGSRKKFWCQPGVVGNKVAVQILEKI 324 >gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC 49176] Length = 326 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 11/283 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I G L LP ++ V + ++ + +S + + +L Sbjct: 52 RTLESIFEHYGRLLSANLPAYLRK----TVQVEVRGSEAITYQEFQNSLSNPVLLAIMNL 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + SNNL T+++ LLG P R S +E + +R + + L + Sbjct: 108 PPLKGSCIMEMSNNLGYTIIDRLLGGEGN--PIEKTRDFSEIEIVVLERILNTCTNYLEE 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E +P L + + E I +++ I V +P L Sbjct: 166 PWHNVVEITPTLMRIETNAQYAQIIS--PQEMTALITLSIKIGTVEGFMSFCLPFTALED 223 Query: 209 TTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + S Q +D + + + I + ++ D V L+ G V+ Sbjct: 224 VMDRLNTKFWFSALQEKDDTNYGEQIEEIIDRAQIPIRAVLGKSVVSVNDFVNLQPGDVV 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + + + G Y +RIT I ++ Sbjct: 284 RLNAKVDDELDVFVGNMKKFKALPGASSGVYALRITKVIREEE 326 >gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4] gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4] Length = 330 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 109/285 (38%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ +I + L F ++ V IS S + I S + + + Sbjct: 53 RSLTRIHENFAR----LLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFEP 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + N+ +L+ LLG +I ++ N L+ +E ++ + + + Sbjct: 109 YPLEGRLLMEVNPNVAYAMLDRLLGGKGISINKIEN--LTEIETRIMSQLFQRTLDSFEE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S+ E P +E+ + + NE V I+++ TI + + +P +L+ Sbjct: 167 AWSSVVEMDPVMEEIEVNPQFLQMVS--PNETVVVISLSTTIAETSGMINICLPH-VVLE 223 Query: 209 TTLISLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS Q K + + K + + I + + + T+ + + L G V Sbjct: 224 EVLPKLSVHYWMQEKKKQHQPGEKEAIEAKIKKAPLLIQSELGRSEITINEFLQLGEGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I +++ G++ + + G++ +++TD I + Sbjct: 284 IELDQLINEPLLVTVEGEKKFYAQPGKMKNKMAVQVTDVIEEAED 328 >gi|303325483|ref|ZP_07355926.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3] gi|302863399|gb|EFL86330.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3] Length = 326 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 85/262 (32%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N + Sbjct: 60 RFARLCTNALSNAVRKRVELNPISIDMTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN+ G + T P++ R + +E+ + + + + + + L Sbjct: 120 SRLVFALVENVFGGAG-TQPKIEGREFTRIEQAVVDKIVKIALDNMEESWRPVHDVKLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + ++ S ++ +P T ++ L + ++ Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDTALGSMIICLPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + V + T ++ +++G V+ + + Sbjct: 236 ERLEVDHAWVARLKERLLETPVELKVHYGNTTITGNQLLRMQVGDVLVLDTDVEDLLTCT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G Y G V +I Sbjct: 296 VAGVGKYQGIAGTVKAMKAFQI 317 >gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92] gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92] Length = 366 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 8/278 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L M V+I S + + S F+ S+ N + + + Sbjct: 66 ARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCILEINPS 125 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + +++ LLG + E NR L+ +E L + I L + + + PN+E Sbjct: 126 IAFPMIDRLLGGTGEN--FETNRELTDIEVNLLDAVLRMIMQRLKESWAMITDMYPNVEA 183 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219 + + + NE V + M + + N + L P L+ L L++++ Sbjct: 184 KESSPNVVQIVS--QNEIVIMVVMEIIVGNSSGMINLCYPV-IYLEPILSRLANRDIMLG 240 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + V + + ++ + + LK G ++ AI+ Sbjct: 241 ETSAKKSRNKELKTLIGRAEVLYEAILGKAIVSVSEFLDLKEGDIVRLDRSADDKAIVCI 300 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + KE++ E+G +I+I I D+ +KN L K Sbjct: 301 DKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKNILEK 338 >gi|78485773|ref|YP_391698.1| flagellar motor switch protein FliM [Thiomicrospira crunogena XCL-2] gi|78364059|gb|ABB42024.1| flagellar motor switch protein FliM [Thiomicrospira crunogena XCL-2] Length = 339 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 93/276 (33%), Gaps = 19/276 (6%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + F E + V+++ + K + + + ++ + Sbjct: 59 ERFARGFQRHFNEMIMSSVEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTL 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L+ T ++ G + ++ R + VE + + + S L + + + Sbjct: 119 DSKLIFTAVDMYFGGTGLLPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMD---- 174 Query: 160 LEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +IDY+ N + + + +N+ E V +++P +L+ Sbjct: 175 ----IEIDYMHSEMNPKFASIVDATDMIVVSPINVRFEGVEGRVDIVMPYA-MLEPVRDK 229 Query: 214 LSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L N +T + + + + + ++ D++ ++ G +IP E Sbjct: 230 LEEGMSNLQGESDNRWSRTLKEETKNIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMPE 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + A G + ++G ++I + Sbjct: 290 --LVTVKAEGIGVLKGKVGESRDRKAVKIEQILRHP 323 >gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 329 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 98/283 (34%), Gaps = 11/283 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I ++ + FL + V +S S + + +S + Sbjct: 53 RTLQMIFENMSRSFTTFLSGYLRTL----VQVSIVSVEQITYYEFSNSLTNPVFIAVIDA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + +NN T+++ +LG R + +E L R Q+ ++ Sbjct: 109 KPLDGPIILEFNNNTTFTIIDKILGGIGT--ADTVERDYTEIEMGLLSRITTQLLPLIKD 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E +P + + + NE + M++ I + +P T++ Sbjct: 167 AWINVIELNPEITRIETNSQFSQIIS--PNETIALCTMSLKINDNEGLINFCLPHITIV- 223 Query: 209 TTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L L+++ N + D K + + I + K T++D++ G ++ Sbjct: 224 PILPLLTTKTWFSNAEKQSCDIGIIKDKISNTYIPLKAVIGMSKITVRDLLNFNKGDILE 283 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + K + N + + G K Y ++IT+ + Sbjct: 284 INKKYKDPIEIKINDETKFLGVPGIKNKKYCVQITEICSEGDD 326 >gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88] gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88] Length = 332 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 10/284 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L M ++ S Q + IHS V + Sbjct: 53 RTLELIHDNYARIMSNYL----TAHMRKNIKAKIESVQQITYEEFIHSIPNPTVLTVFKA 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + V +++ LLG + + R + ++K + K+ + + Sbjct: 109 PPLNGTVLFETNPKFVFEVMDVLLGGN-AEGREYKLREFTDIDKNIIKQVNEGLIEGIKL 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--- 205 E P +E N NE V I ++ + ++ + IP + Sbjct: 168 AWEDILELYPEIESIET--NPALNQTLAPNEPVALITFSVDMGKSSTFINICIPYLSIEK 225 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 +L +I Q +E E+ + + + + K T+++ + L +G V+ Sbjct: 226 ILDKLVIQYWFQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDVL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ++ ++ + + G V KN I+I D ++ D + Sbjct: 286 ILDNQIDKPISINVENQLYAYGKPGVVDKNMGIQILDILDKDVE 329 >gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC 35185] Length = 334 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 102/279 (36%), Gaps = 10/279 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + V++ S + + + S V +L N + Sbjct: 61 ENFARLLNTHLSTHLRTMVNVEVVSVEQLTYQEFLQSLSNPSVIGVMALPPLKGNIIMEV 120 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + + ++ + G E + R L+ +E+ + ++ IA+ S L + S E +P Sbjct: 121 NTGIAFAYIDRVFGGLGENTLKP--RILTEIEEAVMRKFIAKASEFLKESWSNVIEINPI 178 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---- 215 LE ++ V + + + I V L IP +L+ + LS Sbjct: 179 LEAIE--ANPGFVQIVPPSDMVIIVTVQVKIGEVEGFMTLCIPY-LVLEPVMSKLSTSFW 235 Query: 216 -SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + +++ + D I +K ++ + + + T+++ +TL G V+ + K Sbjct: 236 VAASVAKDNNPDKIRALEKKIHKSPIPLIVELGTIDMTIREFLTLGFGDVLQLDTKVKDE 295 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 + K + C G GK ++IT + Sbjct: 296 LKILVGQKPKFLCRPGTQGKRSAVQITQVAFEGDEDTDE 334 >gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC 15579] gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC 15579] Length = 331 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 106/286 (37%), Gaps = 11/286 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S Q + IHS + + + Sbjct: 53 RTLELIHDNYARIISNYLTAQVRS----NVKVKIESVQQITYEEFIHSVPNPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + V +++ LLG + ++ R + ++K + K+ + L Sbjct: 109 PPLNGSVLFETNPQFVFQMIDVLLGGNGNGNYKM--REFTDIDKNIMKQINTGLITNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 E +E N E V I ++ + + + IP ++ Sbjct: 167 AWEDVMEVDVEIESLET--NPALNQTLAPTEPVALITFSVEMGKSNTFINICIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L+ ++ + E E+ + +++ + + T++D + L +G V+ Sbjct: 225 VLEKLVVQYWFRENDEESIEESSSKIKERINIVSMELTAELGRTSVTVEDFLRLSVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + + L + Y + G +GKN ++I D+I+ D +S Sbjct: 285 ALDTKTEEPVHLLIEKEPGYYAKPGVIGKNIGLQILDQIDKDVESY 330 >gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM 5427] gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM 5427] Length = 328 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 106/285 (37%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I S G +L + V + ++ +S ++ + + Sbjct: 53 RTLEIIFESYGRAISTYLSGHLRTM----VSAEVMNAEAVTYSEFSNALINPVILAVTDF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S N+ T+++ +LG S + + R + +E+ + ++ Q +L + Sbjct: 109 RPLKGSILLELSPNMGYTIIDRVLGGSGSGLETI--REFTDIERVILEKIFIQFVQLLAE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P LE + + + NE + + +N+ I NVA + IP +++ Sbjct: 167 PWQNVVELDPMLEKIETNSQVVQIIS--PNEIIALVTLNIKIGNVAGMMNICIPH-LVIE 223 Query: 209 TTLISLSSQNKSENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + L+++ + ++L + + + + I + T+++ + L + Sbjct: 224 SIMDKLNTKFWFAQKEQELGPSYHEYIEKMIEKSRIPIKAILGKTHITVREFLELSRSDI 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + ++ G I+I I + + Sbjct: 284 VKLDKDIDSGLDIYVGNILKFTGSPGEYKNKVAIKINHVIQREDE 328 >gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 331 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 9/284 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 ++ + + + L ++ I S + I S V + Sbjct: 53 RVLRRMHEHFCRLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLE 112 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +V +L+ +G ++ R L+ +E L +R + ++L + + Sbjct: 113 GRMVMEMNPQVVFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKS 170 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + T NE V + +++ + L IP T ++ L Sbjct: 171 VIDLDPQFVSLESNPQFLQLT--TPNETVLVVTISVRVGETTGLINLCIPHVT-IEPVLS 227 Query: 213 SLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS ++ + D K + V++ + + T+++V+ L G I Sbjct: 228 KLSNRYYMDPAFQSGRRQVNDELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLR 287 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + A++ +G+ + +G+ + Y ++I + D + Sbjct: 288 QTIRDPALVYVDGRPAFWGSVGKRNRVYAVKIVGQWEADADGGR 331 >gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius LAA1] gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus acidocaldarius LAA1] Length = 331 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 100/284 (35%), Gaps = 9/284 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 ++ + + + L ++ I S + I S V + Sbjct: 53 RVLRRMYEHFCRLLTSQLSGQLRSVPQIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLE 112 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + +V +L+ +G ++ R L+ +E L +R + ++L + + Sbjct: 113 GRMVMEMNPQVVFAMLDKYMGGDSAGPYRV--RELTDIEVSLFRRLFENVPSILAEAWKS 170 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P + T NE V + +++ + L IP T ++ L Sbjct: 171 VIDLDPQFVSLESNPQFLQLT--TPNETVLVVTISVRVGETTGLINLCIPHVT-IEPVLS 227 Query: 213 SLS----SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 LS ++ + D K + V++ + + T+++V+ L G I Sbjct: 228 KLSNRYYMDPAFQSGRRQVNDELRAKLLSVPVDVRVEVGQAELTVREVLDLCEGDTIVLR 287 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + A++ +G+ + +G+ + Y ++I + D + Sbjct: 288 QTIRDPALVYVDGRPAFWGSVGKRNRVYAVKIVGQWEADADGGR 331 >gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense YUAN-3] Length = 335 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 113/303 (37%), Gaps = 17/303 (5%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S K P + + KT+ I + G L +L + + + Sbjct: 31 STEKKVRPYDFKIPKKF--NKEQMKTLSIIYENYGRLLSSYLSGTLRSY----CKVEVLT 84 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + +F ++ + N + + + + S ++ +++ LLG E + Sbjct: 85 IEEQRFFEYSNALESNVLMGVLDMKPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYE--AD 142 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + +E +L ++ + + ++ P+ + + + NE V + Sbjct: 143 RDYTDIEMQLLRQVVQTVCRLVGDAWENVYALQPDFVRLENNSRQSQLVS--PNETVVIV 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-----SSQNKSENQSEDL-IDPFARKTYQL 238 +++ I +V + IP +L+ L L ++++S+ E + RK Q+ Sbjct: 201 MLDVEIRDVVGNISFCIPY-VILEPVLEHLNTRYWFTESRSKTGDEQASRENLLRKVRQI 259 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + + + TL + + L++G V+P A + + ++ + LG N I Sbjct: 260 PIELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVYSGKEKWFEGTLGTWHNNRAI 319 Query: 299 RIT 301 R+ Sbjct: 320 RVD 322 >gi|312115267|ref|YP_004012863.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC 17100] gi|311220396|gb|ADP71764.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC 17100] Length = 314 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 7/260 (2%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 F+E V SG ++ + + W + IG LV ++ Sbjct: 47 DEFREYCSPAVTAFVNQIVSGDSWDLLEACSDGVSV-IFYCREWDARIVIGVERRLVFSI 105 Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167 ++ + G +P RS + +E K+ + + + T E + E Sbjct: 106 VDAMYGGDGSELPYEDKRSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTET-- 163 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSE 225 L + N + + + +V ++IPQ LL L Q + Sbjct: 164 ALDFASLGQHNMMLIHAQILFQVLDVGGVMFVLIPQNVLL-PVRQKLERQRAPMLSSVDP 222 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 +++ + V +D I K+ L + L++G+ + E+ G ++ Sbjct: 223 RWTSLLSQRVSRAEVTMDAVILGKEIELGQMFKLEVGKTLELEGTER-NIFFEYEGDRLF 281 Query: 286 SCELGRVGKNYTIRITDRIN 305 LGR YT+ I + ++ Sbjct: 282 RGCLGRERGTYTVTIDEALS 301 >gi|119469993|ref|ZP_01612798.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] gi|119446703|gb|EAW27976.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] Length = 230 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 19/197 (9%) Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR------LSNE 179 + E+++ + + I + + + S +YL N E Sbjct: 12 EFTPTERRIVQMLLKIIFEDYKEAWAPVMDVS--------FEYLDSEVNPAMANIVSPTE 63 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQ 237 V + ++ ++ F + +P +L+ L + +S+ + D + Sbjct: 64 VVVISSFHIELDGGGGDFHIALPYS-MLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMD 122 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + V++ T++ TL+ ++ LK G +IP E + + ++GR N Sbjct: 123 VEVDMSTQLLEVDLTLQQIMELKAGDIIPVEMPEH--ITVFVEELPTFRAKMGRSRDNVA 180 Query: 298 IRITDRINFDQKSLKNF 314 ++I+++I Sbjct: 181 LQISEKIKRPDSVKSEL 197 >gi|148259983|ref|YP_001234110.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5] gi|326403062|ref|YP_004283143.1| flagellar motor switch protein [Acidiphilium multivorum AIU301] gi|146401664|gb|ABQ30191.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5] gi|325049923|dbj|BAJ80261.1| flagellar motor switch protein [Acidiphilium multivorum AIU301] Length = 337 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 99/294 (33%), Gaps = 6/294 (2%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 +RL D ++ + + L + +V++ T S + + Sbjct: 47 SRLLYGRADSYERLPMAEVVFERLSRILAGSLRNLFQDNVEVRLTRLASRRLADSFAEIA 106 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKR 137 + W + I V L E LLG + ++++ + L +R Sbjct: 107 PMALLGVFRAREWDNLGLIHVDAMTVSNLTEILLGGRRVAAATGQLPKPVTSISRNLTER 166 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 I + L + + + + E + D R ++ T +++ Sbjct: 167 LIRVVLHDLRNSFAPICDVTFDFER-TETDPRFATIGR-NSGVALTARLSLHSAGRNCMI 224 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKD 255 +I+P T L+ L Q E D A + + ++ ++ ++ + L Sbjct: 225 DIILPFAT-LEPVRELLLQQFMGEKFGRDSIWESHLAEELWHTDIELEAVLDEQTMKLGA 283 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ L++G +IP + L ++++ LG I I+ +++ Sbjct: 284 VMDLRVGDIIPINAPRGSDVTLRCGSVDLFAGRLGVRHGRLAAEIRGWISRERE 337 >gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans DSM 574] gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans DSM 574] Length = 330 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 102/278 (36%), Gaps = 9/278 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L Y + L + + I S + I+S V + SLS + Sbjct: 58 LHEGYARLLSNFLSGYLRTTITIEVASIGQFTYEEFINSVPTPTVMTIFSLSPLKGTALM 117 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + + L++ G S + ++ R L+ +E +A R I ++ L + Sbjct: 118 ETNLQFLFPLIDLQFGGSGDMPMKV--RELTDIELSVANRIIKRLLDHLTVTWKDIATIT 175 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS 216 P +E +L + N+ V + + + N V + +P L L S+ Sbjct: 176 PKIESIDANPHLHQL--MSPNDIVAVLTFSTAVGNEVKGLINMCLPYN-FLDPVLAKFSA 232 Query: 217 QNK---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 N+ Q E ++ + +V I + ++KD + L++G V+P Sbjct: 233 ANQFTRDNEQKEQDLEALEFWLGESDVEISVVVGETDISVKDFLQLQVGDVLPLARGFNQ 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + + + Y ++G VG++ +++T + + Sbjct: 293 DLDMYVDNELKYKVQVGTVGQSLAVQVTSLAEEAWEIV 330 >gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t. morphotype B'] Length = 327 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 86/274 (31%), Gaps = 6/274 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 +G Y + + + M V I S ++ FS S + +N + Sbjct: 58 MGENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNPIALAIVDPYPLKNNMLL 117 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 S N+ LE LLG + + R +++E + R + + + Sbjct: 118 ELSTNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLEHFVDYMREPWENMVALK 175 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT--TLISLS 215 P + + E V I ++ V L IP T+ L + Sbjct: 176 PRMSRVETNSQILNMI--APTEMVALITFSIQFGAVDGLMNLCIPYLTVEPIMDKLNTSY 233 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S+++ + + N+ + + T+K+ + L+IG +I + Sbjct: 234 QFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIELQIGDIIRLDTTIDSLI 293 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G ++I ++ + Sbjct: 294 DVYVGNVVKFKAVPGIHKNKSAVQIKQILDKEDD 327 >gi|213646780|ref|ZP_03376833.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 293 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 85/266 (31%), Gaps = 8/266 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 206 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 207 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFA 266 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKT 273 L ++ LK G V+P ++ Sbjct: 267 DIPLRLSQILKLKPGDVLPIEKPDRI 292 >gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM 12168] gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM 12168] Length = 344 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 14/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ + + L L + V + S + I S + ++ Sbjct: 53 RTVSIMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPTTLAVINM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++++ L G + + R L+ +E+ + + I +I A + + Sbjct: 109 DPLKGNAILEIDPAITFSMIDRLFGGTGQGAKV--QRDLTDIEQSVMEGIIVRILANMRE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + P L + +E V + + + IP T ++ Sbjct: 167 AWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYLT-IE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LSSQ + K +++++ I ++DV+ L++G + Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYLGVLKEKLSDVDMDVVAEIGSVSLPIRDVLALRVGDI 283 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + R LS K+ + C+ G +GK +++ +I + Sbjct: 284 VRLSNVRITDPITLSIGNKKKFLCQPGVIGKKMAVQVLSKITQGE 328 >gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio acidaminovorans DSM 6589] Length = 335 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 105/284 (36%), Gaps = 13/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + I+ I S L + + + +V + I S + V + Sbjct: 53 RAIQMIHDSFARQLTTSLSTLVRSMVSSEVVSV----DQLAYDEFIRSLVQPTVIGVLEM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N + + +LV +++ +LG E I + R L+ +E+ + +R + +I L + Sbjct: 109 YPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRKP--RDLTDIERTVVERVMLKILEHLEE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST + E + + + V + + + + L IP + + Sbjct: 167 SWSTVVDIRFRFESMESNPFFVQIC--PGTDMVLLVTLKVQVGEAEGIMNLCIPYFVM-E 223 Query: 209 TTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKK--TTLKDVVTLKIGQV 264 + LSSQ+ + ++ + V + + L +L DV+ L+ G V Sbjct: 224 PMIDKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I + L + + CE G K+Y R+ + ++ ++ Sbjct: 284 IRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEE 327 >gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum WM1] Length = 339 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 106/281 (37%), Gaps = 9/281 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSS 90 KI S+ Y + ++S + + ++ ++ +N V + + L Sbjct: 53 KILKSIFDNYSRIAGSQINSLFRTSSELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPD 112 Query: 91 WSSN--FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N I S L+++L++ +LG + + + + +E L +R I I L Sbjct: 113 SSKNPPLLINASMTLMLSLIDRMLGGVGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKD 172 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S+ + L + + + +E + + +++ ++ + + IP L+ Sbjct: 173 SWSSYINLNFELSRLEENPSMFQEIGV--DETIVIVVLDVDMKECSGRLNVCIPGNLLMN 230 Query: 209 TTLISLSSQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 I ++ + S+D ++ + ++ TL DV L +G VI Sbjct: 231 IFDIMDKRKHSAMGDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVI 290 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + + L G+ + +LG +N +RI D + Sbjct: 291 NLGTPKDSDVQLYVEGQPWFRGQLGVHKRNVAVRIEDHVET 331 >gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus JW 200] Length = 332 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 107/284 (37%), Gaps = 12/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I +L FL + V+++ S + +S + Sbjct: 55 RTLQMIFENLSRSLTSFLSGYLRTI----VNVTVVSVDQLTYYEFSNSLNNPVFIAIIDA 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + F + +NN +L+ +LG + +L +R + +E L + + QI + + Sbjct: 111 APLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + +P+L + + NE V +++ I +P T L+ Sbjct: 169 PWSNILDINPSLIRVETNSQFAQIIS--PNETVALCTLSIKINETEGIMNFCMPHLT-LE 225 Query: 209 TTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L+++ + ++ + K + + + ++ T+K+ + L+IG +I Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLELEIGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + + K + G Y++RIT+ I + Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514] gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus CCSD1] gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561] gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513] gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 332 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 107/284 (37%), Gaps = 12/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I +L FL + V+++ S + +S + Sbjct: 55 RTLQMIFENLSRSLTSFLSGYLRTI----VNVTVVSVDQLTYYEFSNSLNNPVFIAIIDA 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + F + +NN +L+ +LG + +L +R + +E L + + Q+ ++ + Sbjct: 111 APLEGLFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + +P+L + + NE V +++ I +P T L+ Sbjct: 169 PWSNILDINPSLIRVETNSQFAQIIS--PNETVALCTLSIKINETEGIMNFCMPHLT-LE 225 Query: 209 TTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L+++ + ++ + K + + + ++ T+K+ + +IG +I Sbjct: 226 PIVPKLTTKFWFSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + + K + G Y++RIT+ I + Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100] gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100] Length = 363 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 8/278 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L M V+I S + + S F+ S+ N + + + Sbjct: 66 ARNLASQISSMMRSIVEIKLHSVDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCVLEINPS 125 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + +++ LLG ++ R L+ +E L + I L + E P++E Sbjct: 126 IAFPMIDRLLGGQGDS--FDTLRELTEIELNLLDSILRIIMQRLKESWMNVTEIYPSVEA 183 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN---K 219 + + + NE V + M + I N + + P L++ L L++++ Sbjct: 184 KESSPNVVQIVS--QNEIVIMVVMEIIIGNSSGMVNICYPV-VHLESILSRLANRDIMMG 240 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + V + + + + + LK G ++ AI++ Sbjct: 241 ETSAKKSRNKELKTLIGRAEVIYEAMLGKTFINVNEFLDLKQGDILKLDRSADDKAIVAI 300 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + KE++ ++G +I+I + I D+ +K L K Sbjct: 301 DKKEVFLAQVGLHRFRKSIKILELIKTDKDEIKEMLEK 338 >gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879] gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879] Length = 356 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 107/284 (37%), Gaps = 8/284 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSNQISAIMRSIVEIQLHSVDQMTYGEFLMSLPTPTSFNVFSMKPMDGAG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG + R S +E L + QI L + + E Sbjct: 117 VLEINPSIAFPMIDRLLGGRGD--QYDDTREFSNIELNLLDTILRQIMQNLKESWAAVAE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P+++ + + NE V + M + I + + + P + L+T L L+ Sbjct: 175 IFPSIDAKESSPNVVQIV--AQNEVVVMVVMEIVIGHSSGMMNICYPVIS-LETILSRLA 231 Query: 216 SQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S++ ++ + +V+I + + + K+++ LK+G VI Sbjct: 232 SRDLMMSETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVIMLDRVAD 291 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 +S +G++ Y ++G TI+I D I ++ +K + Sbjct: 292 DTVHVSIDGRDKYRAKIGLQRFRKTIQILDEIKTEKDQVKEMIE 335 >gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21] gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21] Length = 325 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 94/244 (38%), Gaps = 8/244 (3%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF + + + I LV T+++++LG S PQ NR + Sbjct: 86 KFGDFLSVLPNPVCMAIYKMDPLKGAALIAFDATLVFTIVDSILGGSG-VQPQGMNRLFT 144 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMN 187 ++E +L ++ + A L + + ++ NL ++ + N + E+ V T++M Sbjct: 145 SIELRLVEKIVKDALADLERAWAPLCPATMNLLR---LEMNPRLVNIVPPEYQVVTMSMK 201 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245 + IE S +L IP T ++ L + + + D + + +++ Sbjct: 202 IQIEETVGSMILAIPFLT-IEPIRDKLKRGVQMDMMAVDPLWSYRLSEELMGAPMDLSVE 260 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +L D++ L G I K + G + + G G N ++IT + Sbjct: 261 MGGATISLSDLLHLTPGDTIMLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALT 320 Query: 306 FDQK 309 + Sbjct: 321 AGGE 324 >gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51] gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 338 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 103/274 (37%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L + ++ +S + + I S + S +L+ + Sbjct: 67 ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 126 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S L +++ LLG + + NR L+ +E+ + Q+ ++ + S + P Sbjct: 127 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVIPNEPE 184 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---- 215 + NE + + + + + + + +P +L+ L LS Sbjct: 185 YIVLETNPQFTQIV--APNEMIILVTLEVQVGEMVGMVNMCLPY-LVLEPVLDKLSTLFL 241 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +++ S++ ++ RK V++ T + + ++D++ L G VIP + K Sbjct: 242 FSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEAL 301 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G G++ ++IT+ + + Sbjct: 302 PVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 335 >gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis HTCC2601] gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601] Length = 313 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 8/278 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + L + K + ++S + + + S + W + Sbjct: 38 RFSLSLAQTLKSYLGAMAEVSLGGIDYLSCQDALKDQPDPSLISVTTAEEWGGTIAAIMT 97 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 L+ ++E G + R+ +++EK++ + + L+ + + ++ Sbjct: 98 PELLFGIIEITFGGRTVATGEKKTRNFTSIEKRIGQNFTETVLTELSNAFAKVTPVNFDI 157 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 K + + IE V ++P K + + SQ + Sbjct: 158 SHLET--NPKALLLAPPTSACVRARLTIDIEGRIGEMVFVLPNTAFEK--VSHILSQQFT 213 Query: 221 ENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 Q NV + + ++DV+ GQV+ + L Sbjct: 214 GGQLGGDSGWRLKMTDMLGSTNVPMSAVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTL 273 Query: 278 SANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLKNF 314 GKEI E+G R +++++++ ++ S + Sbjct: 274 CCAGKEIARAEVGHRKNGRIALKLSEKLYEEKDSPDDL 311 >gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii Rt8.B1] gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii Rt8.B1] Length = 332 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 106/284 (37%), Gaps = 12/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ I +L FL + V+++ S + +S + Sbjct: 55 RTLQMIFENLSRSLTSFLSGYLRTI----VNVTVVSVDQLTYYEFSNSLNNPVFIAIIDA 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + F + +NN +L+ +LG + +L +R + +E L + + QI + + Sbjct: 111 APLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + +P+L + + NE V +++ I +P T L+ Sbjct: 169 PWSNILDINPSLIRVETNSQFAQIIS--PNETVALCTLSIKINETEGMMNFCMPHLT-LE 225 Query: 209 TTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L+++ + ++ + K + + + ++ T+K+ + +IG +I Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLEFEIGDII 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + + K + G Y++RIT+ I + Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329 >gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18] gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18] Length = 325 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 92/236 (38%), Gaps = 7/236 (2%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 KF + + + I + LV T+++++LG S Q NR + Sbjct: 86 KFGDFLSVLPSPVCMAIYKMDPLKGAALIAFDSTLVFTIVDSILGGSGVPSGQGMNRLFT 145 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMN 187 ++E +L ++ + A L + + +S NL ++ + N + E+ V T++M Sbjct: 146 SIELRLVEKIVKDALADLEKAWAPLCPASMNLLR---LEMNPRLVNIVPAEYQVVTMSMK 202 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTR 245 + IE S +L IP T ++ L + + D + + ++I Sbjct: 203 IQIEETVGSMILAIPFLT-IEPIRDKLKRGVQMDMMVMDPLWSYRLSEELMGAPMDISVE 261 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + +L D++ L G VI K + G + + G G N ++IT Sbjct: 262 MGGATVSLADLLGLTPGDVIMLDSSGKDELSVKVGGTKKFMGIAGVSGGNKAVQIT 317 >gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM 12809] Length = 336 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 103/285 (36%), Gaps = 12/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 ++I + + L + DI+ TS + + S + F+ S+ Sbjct: 55 RSIRNLHDKFARNFSSTLSNYLRTIT----DITLTSVDQMTYGEFLMSLPDPTSFNIISM 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + +LV +++ LLG + + P R L+++E+ + + I L + Sbjct: 111 IPMEGNAVLEINPSLVFPIVDKLLGGTGK--PLFQTRELTSLEQHIMDGILGLILKDLEE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + L+ + NE V + + V L IP +L+ Sbjct: 169 VWRQIIP-NIRLKKELSENSPHIIQIVSQNEVVILVVCEVKFGEVLGMMNLCIP-AIVLE 226 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L +SS + + L + V + K T++DV+ L+ G + Sbjct: 227 PVLGKISSSDWLIGAKKGLQGEKEDEIMHMLNDTEVPTSIYLGHNKLTIEDVLGLQNGDL 286 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + F ++ + N K+ + E+G +G ++IT I Sbjct: 287 VMFNVKQDRPVEIHFNNKQKFLGEVGTLGVKKAVKITQFITESDD 331 >gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense DCB-2] gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense DCB-2] Length = 331 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 103/274 (37%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L + ++ +S + + I S + S +L+ + Sbjct: 60 ENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYTLNPLEGTLLMEM 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 S L +++ LLG + + NR L+ +E+ + Q+ ++ + S + P Sbjct: 120 SPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIGEAWSEVISNEPE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---- 215 + NE + + + + + + + +P +L+ L LS Sbjct: 178 YIVLETNPQFTQIV--APNEMIILVTLEVQVGEMVGMVNMCLPY-LVLEPVLDKLSTLFL 234 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +++ S++ ++ RK V++ T + + ++D++ L G VIP + K Sbjct: 235 FSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDVIPLMQNVKEAL 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G G++ ++IT+ + + Sbjct: 295 PVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 328 >gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM 11293] gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM 11293] Length = 341 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 93/280 (33%), Gaps = 14/280 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ + + L L + V + S + I S ++ Sbjct: 53 RTVSIMHETFARLTTTALSAQLRSM----VHVHVASVDQLTYEEFIRSIPNPTTLGIINM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + ++++ L+G E NR L+ +E+ + + I +I L + Sbjct: 109 DPLKGSAVLEIDPAITFSVIDRLMGGQGEGSKV--NRDLTDIEQTVMEGIIVRILGNLRE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + P L + E V + + + V IP T ++ Sbjct: 167 AWSQVIDLRPRLGQIETNPQFAQIV--PPTEMVVLVTLETKVGEVEGMMNFCIPYLT-IE 223 Query: 209 TTLISLSSQNKSENQSEDLIDP----FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LS+Q + + + + + I T++DV++L+ G V Sbjct: 224 PIISKLSAQYMYSSVRSGATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDV 283 Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 I R + ++ + C G VG ++I R Sbjct: 284 IRLPDVRVGDPMTIKIGNRKKFECRPGLVGNKVAVQIVHR 323 >gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2] gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2] Length = 328 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 105/278 (37%), Gaps = 15/278 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +DV+IS + I S + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + +L T+L+ ++G + P NR + +E + ++ + + +L Q Sbjct: 108 DVFEGSAIFEMRLDLFYTMLDIIMGGPGDNPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q P++E+ + NE V + +++ S + P LL+ Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221 Query: 209 TTLISLSSQNKSENQS----EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS + + E+ ++ + + ++ V + I + LK+++ L++G V Sbjct: 222 PLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVIGETELRLKEILDLEVGDV 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I K + G+ + G Y +++T Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGTFKGKYAVKVTG 319 >gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 326 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 87/262 (33%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + + V+++ S KF + S + + N + Sbjct: 60 RFARLCTNALSNSVRKRVELNPISIDMTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+E++ G + + P++ R + +E+ + + + + + + L Sbjct: 120 SRLVFALVESVFGGAG-SQPKVEGREFTRIEQAVVDKIVKIALDNMEESWRPVHDVKLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + ++ S ++ +P T ++ L + ++ Sbjct: 179 VRSEINPQFAAIV--PPSDVVVVITFEVELDTALGSMIICLPYAT-IEPIRSKLHASFQT 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + + + V + T ++ +++G ++ E+ + Sbjct: 236 ERLEVDHAWVARLKERLMETPVELKVCFGKTTITGNQLLRMQVGDILVLDKDEEDMLDCT 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 G Y G + + +I Sbjct: 296 VAGVCKYQGIAGTIKAMKSFQI 317 >gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421] gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421] Length = 344 Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 104/282 (36%), Gaps = 14/282 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T+ + + L L + V + S + I S + + Sbjct: 52 MRTLSLMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + ++ ++++ L G + + R L+ +E + + I +I A + Sbjct: 108 MDPLKGNAILEIDPSVTFSIIDRLFGGTGQGTKV--QRDLTDIENSVMEGVIVRILANVR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L + +E V + + + + IP T + Sbjct: 166 EAWTQVIDLRPRLGQIETNPQFTQIV--PPSEMVVLVTLETKVGDEEGMMNFCIPYIT-I 222 Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + LSSQ + + + K +++++ + +++DV++L+IG Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLKDKLSTVDMDVVAEVGFLNLSVRDVLSLRIGD 282 Query: 264 VIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 VI LS ++ + C+ G VGK ++I ++I Sbjct: 283 VIRLKDTHVGDPFTLSVGNRKKFLCQPGVVGKKVAVQILNKI 324 >gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str. Eklund 17B] gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str. Eklund 17B] Length = 331 Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 105/282 (37%), Gaps = 11/282 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V + + + + IHS + + + + Sbjct: 53 RTLELIHDNFARITSNYL----TGQIRKNVKVKIETVEQITYEEFIHSVQNPTIITIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + +++ LLG S + ++ N+ S ++K + ++ + + L Sbjct: 109 PPLTGSIIFETNPQFSFQIIDILLGGSGD--RKIGNKEFSDIDKNIIRQVTTGMISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 SP +E N NE V I ++ ++ + IP ++ Sbjct: 167 AWEDILNVSPEVEGIET--NPAINQTLAPNEPVALITFSVEFGEHSTFMNMCIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ QN E + ++++ + + + D + L G +I Sbjct: 225 VLDKLVVQYWFQNDDEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDII 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ + + +E Y + G GKN + I D I+ + Sbjct: 285 KLDNKSSSPIKVYVGDEECYYAKPGVTGKNMGVAILDIIDKE 326 >gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM 4359] Length = 328 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 104/278 (37%), Gaps = 15/278 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +DV+IS + I S + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + +L T+L+ ++G + P NR+ + +E + +R + I +L Q Sbjct: 108 DVFEGSAIFEMRLDLFYTILDIIMGGPGDNPP---NRTPTDIETSIMRREVTNILTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q P++E+ + NE V + +++ S + P LL+ Sbjct: 165 AWSDFQYFIPSIENIET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLN----VNIDTRINLKKTTLKDVVTLKIGQV 264 L LS++ + + I+ + + + + I TL++V+ L+ G V Sbjct: 222 PFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPLTVQAVIGEAWLTLREVLNLQEGDV 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I K + GK + G+ Y ++IT Sbjct: 282 IRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKITG 319 >gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC 35405] gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola] gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC 35405] gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402] Length = 344 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 105/283 (37%), Gaps = 16/283 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T++ + + L L + + V + + + I S + + Sbjct: 52 MRTVQMMHETFARLTTTSLSAQLRSMAHVHV----ATVEQLTYEEFIRSIPTPTTLAIIN 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + ++ + ++ ++++ L G + R L+ +E + + I +I A + Sbjct: 108 MDPLRASALLEIDPSVTFSIIDRLFGGKGQGSKV--QRELTEIESSVMEGVIVRILANMR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTN-RLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + +T + P L +ID + +E V + + + + +P T Sbjct: 166 EAWTTVVDLRPRLG---NIDTNPQFVQIVTPSEMVLLVTLETKVGEEEGMMNICLPYIT- 221 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLKKT--TLKDVVTLKIG 262 L+ + LS+Q + +A V +D + +++DV+ L+ G Sbjct: 222 LEPIISKLSTQFWFSSVRRASTGQYAAAIKDKLSTVEVDMVAEVGSLDVSIRDVLNLRAG 281 Query: 263 QVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 V+ R L+ + +SC+ G GK ++I ++I Sbjct: 282 DVVRLPNVRVGDPFKLTVGSRPKFSCQPGVKGKKLAVQILEKI 324 >gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis MPA1U2] gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis MPA1U2] Length = 327 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 13/278 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ +I + + L F ++ V + + + + ++ + Sbjct: 48 RTLSRIHENF----SRLLSSYFSAQLRTYVQVGVEVVAEISYEEFVENVQKKSMLGVFEA 103 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + S N+V + + LLG + + L+ +E + +R A+ + Sbjct: 104 APLQGSMVMEFSPNVVHVMFDRLLGGQGHVLEKDSE--LTEIEISVIERVFAKALDCFQE 161 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + SP L++ NE V + + I NV + +P +L+ Sbjct: 162 AWLSVVKLSPELKEIEVNSQFLTT--SPPNETVILVKLQTKIGNVEGVINICLPH-VVLE 218 Query: 209 TTLISLSSQNKSENQSE--DLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS+++ NQ + + + K + + I + D + LK G V Sbjct: 219 QILPKLSAKHWLANQKKAIEAHEVVALEEKLHGTKMEIKAVLGQSMIEFGDFLNLKKGDV 278 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I + L + K + + G I++T+ Sbjct: 279 IRLDESYDSPVTLQVDNKLKFYAQPGVSKGRMAIQVTE 316 >gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT 1] Length = 325 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 8/263 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L + V ++ S F I S + S S + + Sbjct: 58 ENFARILSNFLTAYLRTPVQVTLASVSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLET 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + V +++ L G +T Q+ R L+ +E + +R + +I L E SP Sbjct: 118 NPQFVFPIIDLLFGGEGKTPKQI--RELTEIELTVMRRIVNKILENLRYAWEDINELSPQ 175 Query: 160 LEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218 +E ++D + ++ NE V + ++ I + + P TL + Sbjct: 176 IE---NMDTNPQFNQMIASNETVALLTLSTKIRDSEGLINVCFPFITLEPVIANLTAQHW 232 Query: 219 KSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 S +Q + ++V + + ++D + + G VI R Sbjct: 233 FSNSQISGGVHSRMLETGLEDVDVELTAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMT 292 Query: 277 LSANGKEIYSCELGRVGKNYTIR 299 L K ++ + G ++ Sbjct: 293 LLVEEKPMFKIQAGVSKGRRAVQ 315 >gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_AG0C1] gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori Lithuania75] Length = 354 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + I +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335 >gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila RKU-10] gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila RKU-10] Length = 328 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 15/278 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +DV+IS + I S + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + +L T+L+ ++G + P NR + +E + ++ + + +L Q Sbjct: 108 DIFEGSAIFEMRLDLFYTMLDIIMGGPGDNPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q P++E+ + NE V + +++ S + P LL+ Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLN----VNIDTRINLKKTTLKDVVTLKIGQV 264 L LS + + + ++ + + + V + I + LK+++ L++G V Sbjct: 222 PLLEKLSDRFWMMGRKPERVEERIEELKKASQKVPVTVQAVIGETELRLKEILDLEVGDV 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I K + G+ + G Y +++T Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVTG 319 >gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str. Alaska E43] gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str. Alaska E43] gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 331 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 106/282 (37%), Gaps = 11/282 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V + + + + IHS + + + + Sbjct: 53 RTLELIHDNFARITSNYL----TGQIRKNVKVKIETVEQITYEEFIHSVQNPTIITIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + L +++ LLG S + ++ N+ S ++K + ++ + + L Sbjct: 109 PPLTGSIIFETNPQLSFQIIDILLGGSGD--RKIGNKEFSDIDKNIIRQVTTGMISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 SP +E N NE V I ++ ++ + IP ++ Sbjct: 167 AWEDILNVSPEVEGIET--NPAINQTLAPNEPVALITFSVEFGEHSTFMNMCIPYLSIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L ++ QN E + ++++ + + + D + L G +I Sbjct: 225 VLDKLVVQYWFQNDDEALIAESRVKMEEGIQKVDIEVFAELGNTNIIVDDFLKLTKGDII 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ + + +E Y + G GKN + I D I+ + Sbjct: 285 KLDNKSSSPIKVYVGDEECYYAKPGVTGKNMGVAILDIIDKE 326 >gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 334 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 37 RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 96 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 97 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 154 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 155 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 212 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 213 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 272 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 273 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 315 >gi|301165893|emb|CBW25466.1| flagellar motor switch protein FliM [Bacteriovorax marinus SJ] Length = 343 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 92/279 (32%), Gaps = 8/279 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + + + IS S KF +++ + + Sbjct: 66 ISERFIRSFRVSLSNSLRKISTISMISTDLLKFGEFVNTLPIPSCMCIMRFNELRGPALL 125 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + L ++++ G + ++ + + +E K+ + L + + Sbjct: 126 VFESKLAYAIIDSYFGGTDRPFTKIEGKEFTMIELSFMKKVMDMAINDLEEAWAPVHRID 185 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 ++ + + + E+ + + ++++P T ++ LSS Sbjct: 186 AQYLRTEINPQFVGVV--PPSDVIIATTLEVEFESASGTIMIVVPYST-IEPIKQKLSSS 242 Query: 218 NKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +++N D Q + + ++ T+ D+VTL+ G +IP Sbjct: 243 FQTDNDMADSIWTQAMNEHIKQAHATMVVKLGETNITVGDLVTLEKGDIIPLNQEASGEV 302 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ G E C +G N ++IT N D+ + Sbjct: 303 VVEVEGVEKMKCLIGTHKGNRAVQIT---NVDKTIKREM 338 >gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense Az-Fu1] Length = 322 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 99/272 (36%), Gaps = 8/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K + + + +S S KF I+ ++ ++ + + + Sbjct: 52 ERWAKIFREEIRSLFPVINMVSKNSITVMKFGDFINKIPLPASYTIFTMKPLNESALLVI 111 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +V L+ L G ++ R + +E + + + + T Sbjct: 112 DSRVVFNLISALFGG-GARPFKIEGRDFTKLELNIIHDFVDTVLTSFEKIWQTVYPVEVE 170 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + +L + + E V + M + IE + F PQ L I + S+ Sbjct: 171 RKSVELNPFLVRIVS--PAEKVIVVEMILDIEGLEVPFSFAFPQMMFLPLKDI-IFSETS 227 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAIL 277 S D + +K V ++ + L + T +++++ L++G I ++ L Sbjct: 228 SLEIPADWKENILKKL--SKVELNFTLELSRFTMLVEELLNLEVGSDIILNVKKDDSINL 285 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 GK ++ +LGR K Y I DR+ ++ Sbjct: 286 MVEGKPKFTAKLGRYDKKYAAMIVDRVKGEED 317 >gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128] gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8] gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128] gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8] Length = 354 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + I +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335 >gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695] gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1] gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695] gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7] Length = 354 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + I +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335 >gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8] gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8] Length = 328 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 105/278 (37%), Gaps = 15/278 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +DV+IS + I S + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + +L T+L+ ++G E P NR + +E + ++ + + +L Q Sbjct: 108 DVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q P++E+ + NE V + +++ S + P LL+ Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221 Query: 209 TTLISLSSQNKSENQS----EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS + + E+ ++ + + ++ V + I + LK+++ L++G V Sbjct: 222 PLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVIGETELRLKEILDLEVGDV 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I K + G+ + G Y +++T Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVTG 319 >gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12] gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12] Length = 354 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + I +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335 >gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA] gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA] Length = 331 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 13/283 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E + + + +L ++ V + S + + +HS + + + Sbjct: 53 RTLEMVHDAFARIISNYLS----GQLRKHVKVDIQSVEQITYEEFVHSIANPTILTIFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + +L+ LLG + + + + S ++K + +++ L Sbjct: 109 PPLQGNILLEMNPQFSFQILDILLGGTGDRDEK--AKEFSEIDKNILANITSEMIKSLIL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P E N NE V ++ + + + L IP ++ K Sbjct: 167 AWDGILEVKPEFEGLET--NPSANQTLAPNEPVALLSFLVELGKSTTYMNLCIPYLSVEK 224 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQ--LNVNIDTRINLK--KTTLKDVVTLKIGQV 264 L L Q + +L D K + V ++ + L + T+ D + L G V Sbjct: 225 -VLDKLVVQYWFKTDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + + +E + + G VGKN I++ D ++ D Sbjct: 284 LVLNSQYSDPVRVFVENEECFIAKPGIVGKNMGIQLLDILDKD 326 >gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1] gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1] Length = 328 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 15/278 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +DV+IS + I S + Sbjct: 53 RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + +L T+L+ ++G + P NR + +E + ++ + + +L Q Sbjct: 108 DIFEGSAIFEMRLDLFYTMLDIIMGGPGDNPP---NRPPTEIETSIMRKEVTNMLTLLAQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q P++E+ + NE V + +++ S + P LL+ Sbjct: 165 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 221 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L LS + + + ++ + ++ V + I + LK+++ L++G V Sbjct: 222 PLLEKLSDRFWMMGRKPERVEERMEELKKVSQKVPVTVQAVIGETELRLKEILDLEVGDV 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 I K + G+ + G Y +++T Sbjct: 282 IRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVTG 319 >gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str. Sheeba] gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba] Length = 354 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 104/311 (33%), Gaps = 6/311 (1%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ +P + L K + S+ + L M V+I S Sbjct: 29 KDITPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 + + S F+ S+ + + ++ +++ LLG NR Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGS--AYDQNREF 146 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 S +E L + Q+ +L + S E P ++ + + NE + + Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANVVQIV--AQNEISIMVVLE 204 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + I + + P ++ S + + +V++D + Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNRELQALLSSVSVDMIVL 264 Query: 248 LK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 L + +LK+++ L +G I + + K+ Y +G G TI+I + + Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324 Query: 306 FDQKSLKNFLH 316 +++ K L Sbjct: 325 SEKEHTKEILE 335 >gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori SouthAfrica7] Length = 354 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4] gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4] Length = 354 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + I +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335 >gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38] gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180] gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38] gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180] Length = 354 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + I +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVIYSEKERTKEILE 335 >gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824] gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824] gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018] Length = 331 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 11/282 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L ++ +V + + + + IHS + + + Sbjct: 53 RTLELIHDNYSRIMSNYL----TAQLRDNVKVKIETVEQITYEEFIHSVPNPTILTIFRM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + ++ LLG + + R ++ ++K + + + L Sbjct: 109 PPLKGSILYETNPQFIYQAIDILLGGNGAGKYKP--REITDIDKNIIMKINQGLIDNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--- 205 P +E N +E V I ++ + N + + IP + Sbjct: 167 AWGEVINVEPEIESLET--NPALNQTLAPHEPVALITFSVDVGNSHTYINICIPYLSIEK 224 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 +L ++ Q E ++ ++ + V + ++ + T++D + L IG VI Sbjct: 225 ILDKLVVQYWYQENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDFLRLSIGDVI 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + Y G +GKN I+I D+I+ D Sbjct: 285 TLNSKCSDPVPVYIYDNLHYLAAPGILGKNMGIKILDKIDKD 326 >gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d] Length = 354 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32] Length = 354 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG +R S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKEHTKEILE 335 >gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99] gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 354 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDFMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKVAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470] gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470] gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20] gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464] Length = 354 Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans SSM1] gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans SSM1] Length = 333 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 102/280 (36%), Gaps = 12/280 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +++ + + L + + DI+ S + + S + F+ S+ Sbjct: 54 RSLRNLHDKFARNFSSALSNVLRAIT----DINLVSVDQMTYGEFLMSLPDPTSFNVISM 109 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++V +++ LLG + + + ++ R L+ +E+KL I + L Sbjct: 110 IPLEGNLVLEINPSIVFPIVDKLLGGTGQPLYKI--RELTDLEQKLLDGVINLLLKELED 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + + + NE V I + + L P L+ Sbjct: 168 VWRQVIP-NVKFKKEVSENSPQVIQIVAQNEVVVLIVFEVKFGEASGLINLCFP-AITLE 225 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT----YQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L +SSQ+ + + + + V+++ + T+ ++++LK G Sbjct: 226 PVLGKISSQDWIIGGKKGKFGNYEEQIFLLLEDIFVDVEAVLGENIFTVDEILSLKAGDT 285 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I + A+L N + + ELG G +++ I Sbjct: 286 ILLNKKSTHPAVLILNNLKKFEVELGISGVKKAVKVKRII 325 >gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori Gambia94/24] Length = 354 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MYPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDFMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] Length = 330 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 10/266 (3%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 ++ + L + +V I S + I S V + SL+ Sbjct: 60 VFARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFSLNPLKGTAIAQLD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + + +++ G + E + R L+ +E + ++ +I L P + Sbjct: 120 SMFLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLALAWKDIVHVEPVI 177 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQNK 219 E YL + + +E V I + + A L +P LL + LS Q + Sbjct: 178 ETVETNPYLHQIFSF--SEIVALITLTTQVGESARGFINLCLPF-PLLDPVVSQLSFQRR 234 Query: 220 SENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 Q+ + D ++ + + + T+ D + L+ G V+ + Sbjct: 235 FGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGDVLILDKKVDQDL 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301 L + + G +G ++IT Sbjct: 295 DLYIGEHLKFKVQAGALGSKLAVQIT 320 >gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 328 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 99/274 (36%), Gaps = 9/274 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L ++ + + + S + + I S + + SL + + Sbjct: 60 ENYARTLGTYLSGQLRVPLQVELLSVEQLTYEEFIRSIPNPTILNIFSLYPLHGSAIMEI 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + NL L+ LLG + R+L+ +E+ + +R ++ L + + + P+ Sbjct: 120 NPNLGFAFLDRLLGGPGYAPSK--ARALTEIEQTVIERLSQRMLDYLEEPWGSIIQIEPS 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-- 217 LE + E + +++ + +V + IP +L+ L L+ Sbjct: 178 LERVETNPQFTQLV--QPTEIMIIVSLETRMGDVMGMINICIPF-LVLEPILDKLNVHYY 234 Query: 218 --NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ +S I K + I + T++D++ L +G VIP Sbjct: 235 YSTAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDVIPLNRNISQEL 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + + + G I++T + + + Sbjct: 295 DIVIGNRAKFLGKPGVFANRMAIQVTGIVEEESE 328 >gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum SS14] gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] Length = 344 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 107/293 (36%), Gaps = 15/293 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T+ + + L L + V + S + I S + + Sbjct: 52 MRTLSLMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPSTLAVIT 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + ++ ++++ L G + + R L+ +E + + I +I A + Sbjct: 108 MDPLKGNAVLEVDPSITFSIIDRLFGGTGQAAKV--QRDLTDIENSVMEGVIVRILANVR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L + +E V + + + IP T + Sbjct: 166 ESWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYIT-I 222 Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + LSSQ + + + K +++++ + + +++D++ L++G Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGD 282 Query: 264 VIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314 +I +LS ++ + C+ G VGK +I +RI + Q+ + Sbjct: 283 IIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTSQEDFEEL 335 >gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16] Length = 354 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG +R S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A] Length = 354 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG +R S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGVVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKEHTKEILE 335 >gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum str. Nichols] gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum] gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp. pallidum str. Nichols] gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp. pallidum str. Chicago] Length = 344 Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 107/293 (36%), Gaps = 15/293 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T+ + + L L + V + S + I S + + Sbjct: 52 MRTLSLMHETFARLTTTSLSAQLRSM----VHVHVASVDQLTYEEFIRSIPTPSTLAVIT 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + N + ++ ++++ L G + + R L+ +E + + I +I A + Sbjct: 108 MDPLKGNAVLEVDPSITFSIIDRLFGGTGQAAKV--QRDLTDIENSVMEGVIVRILANVR 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + + + P L + +E V + + + IP T + Sbjct: 166 ESWTQVIDLRPRLGQIETNPQFAQIV--PPSEMVVLVTLETKVGEEEGMMNFCIPYIT-I 222 Query: 208 KTTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + + LSSQ + + + K +++++ + + +++D++ L++G Sbjct: 223 EPIISKLSSQFWFSSVRRSSTTQYMGVLRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGD 282 Query: 264 VIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314 +I +LS ++ + C+ G VGK +I +RI + Q+ + Sbjct: 283 IIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGKKIAAQILERIESTSQEDFEEL 335 >gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83] Length = 354 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG +R S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|85058024|ref|YP_453726.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] gi|84778544|dbj|BAE73321.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] Length = 340 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 101/309 (32%), Gaps = 12/309 (3%) Query: 7 HKNTSPLHPILLARLTGKLGDK-KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 T P A+ + G++ K +E I+ ++ L + + + DIS + Sbjct: 36 SPKTGSGSPFDAAQRRRQGGERLKGLEMINQDFAGRFRSALFILMQRRT----DISAEAI 91 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 + + + L N + L+ T L+ L G S P R Sbjct: 92 LIQPYREFAAQLRPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRL-PDAQER 150 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + + E+++ R + + P +F + + T E V Sbjct: 151 AFTPAEQRVIDRLLKLMLQAYGDAWLGLHPLEP---EFITAETSCRFTGFSDGEMVVISP 207 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDT 244 + I + F ++ Q L I + Q + AR+ + + Sbjct: 208 FRVAIGAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVA 267 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 R L V+ L+ G ++P ++ A + +G ++ G + Y +R+ I Sbjct: 268 RFADLPLCLSRVMELRRGDILPIPRPDRLTACV--DGVPVFLGNYGSLNGRYALRVEHVI 325 Query: 305 NFDQKSLKN 313 N L N Sbjct: 326 NQGIDQLNN 334 >gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51] gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52] gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57] Length = 354 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG +R S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|242281039|ref|YP_002993168.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM 2638] gi|242123933|gb|ACS81629.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM 2638] Length = 326 Score = 128 bits (323), Expect = 7e-28, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 93/268 (34%), Gaps = 6/268 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VDI+ S KF + S S + N + Sbjct: 60 RFARLATNNLANTMRKRVDINPISIDMSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+E+ G S + P++ R + +E+ + R + + L E L Sbjct: 120 SRLVFALVESFFGGSG-SQPKVEGRDFTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ V I + +EN S ++ +P T L+ L + +S Sbjct: 179 VRSEVNPQFAAIV--PPSDVVVVITFEVELENAIGSLIVCLPYST-LEPIRSKLHASFQS 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D + F + + V++ R+ K T + ++ L+ G ++ E+ Sbjct: 236 ERLEIDHVWVSRFKERLLETPVDLLVRLGKTKITGRQLLNLEEGDLLLLDTDEEDMLECE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINF 306 G Y GRV N +I I Sbjct: 296 VGGVLKYLGSPGRVKANRAFQIAQAIEP 323 >gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10] gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10] gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30] Length = 354 Score = 128 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 57 RSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 116 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG +R S +E L + Q+ +L + S E Sbjct: 117 VLEINPSIAFPMIDRLLGGKGS--AYDQSREFSDIELNLLDTILRQVMQILKEVWSPVVE 174 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P ++ + + NE + + + I + + P ++ S Sbjct: 175 MFPTIDAKESSANVVQIV--AQNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGS 232 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKT 273 + + V++D + L + +LK+++ L +G I Sbjct: 233 RDLMLSETNSKKSRNKELQALLSGVSVDMMVFLGAVELSLKEMLDLDVGDTIRLNKIAND 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K+ Y +G G TI+I + + +++ K L Sbjct: 293 EVSVYVHKKKRYLASVGFQGYRKTIQIKEVVYSEKERTKEILE 335 >gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM 2379] gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM 2379] Length = 325 Score = 128 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 101/256 (39%), Gaps = 7/256 (2%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 ++ V+I +S KF I + + + I + LV++L+ Sbjct: 67 SLSNRLRKVVEIKKIGARSYKFDDFIQTLPSPVCMAIFKIEPLKGAALISFDSTLVLSLV 126 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 ++LLG + + + NR +++E +L ++ +A I L + + + NL ++ Sbjct: 127 DSLLGGTGTSKVSMANRMFTSIELRLVEKIVADILQDLEKAWAPLYATHMNLLR---MEM 183 Query: 169 LKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSE 225 + N + E+ + T+++ + IE+++ + V +P T ++ L + + + Sbjct: 184 NPRLINIVPPEYQIVTMSLKIQIEDISGNMVFAVPYMT-IEPIRDKLKAGMQFDLMAIDP 242 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + + + I + TL +++ L G I + ++ G Y Sbjct: 243 QWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDKPCSSELLVKVEGTTKY 302 Query: 286 SCELGRVGKNYTIRIT 301 G N I+IT Sbjct: 303 FAIPGIRHGNRAIQIT 318 >gi|332702324|ref|ZP_08422412.1| flagellar motor switch protein FliM [Desulfovibrio africanus str. Walvis Bay] gi|332552473|gb|EGJ49517.1| flagellar motor switch protein FliM [Desulfovibrio africanus str. Walvis Bay] Length = 325 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 6/262 (2%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + M VD++ S KF + S + + N Sbjct: 60 RFARLATNALANAMRKRVDVNPISIDMSKFGDFMRSLPVPTSINIFKMEPLRGNALCVVD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + LV L+EN G S T P++ R + +E+ + + + + + + E L Sbjct: 120 SRLVFALVENFFGGSG-TQPKVEGRDFTHIEQAIIGKVVDLALTNMEEAWAPVHEVHIEL 178 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 +E V + + +EN SF++ +P T ++ L + +S Sbjct: 179 IRAEINPQFAAIV--PPSEVVVVVTYEVELENAIGSFIVCLPYAT-IEPIRAKLYASFQS 235 Query: 221 ENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E D I F + + V + R+ T + ++ + IG ++ + Sbjct: 236 ERLEVDHAWISRFKERLMETPVEMVVRMGKTSITGRQLLNMDIGDILLLDTDVDDLLVAE 295 Query: 279 ANGKEIYSCELGRVGKNYTIRI 300 +G + GRV N ++ Sbjct: 296 VDGVRKFHGIPGRVKGNRAFQV 317 >gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis RM3195] gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis JV21] gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis RM3195] gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis JV21] Length = 360 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 110/292 (37%), Gaps = 12/292 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI+ I L L M V+ S + + S F+ S+ Sbjct: 55 RTIKGIHDKLARN----LASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFSI 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 N + + ++ +++ LLG ++ +R L+ +E L + I L + Sbjct: 111 KPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLKE 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 ST E P++E + + + NE + + M + I N + + P L+ Sbjct: 169 SWSTVTEIYPSIEAKESSPNVVQIVS--QNEIIIMVVMEIIIGNSSGMVNICYPV-VHLE 225 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + L L++++ + + + V + + + + + LK G ++ Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVNEFLELKQGDIL 285 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 A++S + K+++ ++G +I+I + I D+ +K L K Sbjct: 286 RLDREADDKAVVSIDKKDVFLAQIGLHRFRKSIKIIELIRTDKDEIKEILEK 337 >gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO] gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO] Length = 330 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 104/285 (36%), Gaps = 14/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 + + I + +L + + I+ S + I S + S Sbjct: 52 RVFDMIHENFARSISTYLSGRVRTFTN----INLASIDQISYEEFIRSLPAPSFITVFSA 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + + T+L+ +LG R+ S +E + ++ + I L+Q Sbjct: 108 PEFVGSAILEMNLEIFYTILDLILGGPG---IPNVKRTPSDIELSIMRKEVMNILTNLSQ 164 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + P +E + + NE + +++ +TI + P +L + Sbjct: 165 AWSEVYQFVPTIESVEN--NPQFVQIAPPNEMILLVSLYVTIAKTEGFLNICWP-SSLTE 221 Query: 209 TTLISLSSQNKS----ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + LSS+ E SE +++ + + + I + ++K+++ L++G V Sbjct: 222 PFMDKLSSRTWFTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVKEILDLEVGDV 281 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + ++ K + G + +++T + + + Sbjct: 282 IRLQTHKDDDVMVEVQSKPKFMARPGVFKGHRAVKVTRILKPEVE 326 >gi|255022053|ref|ZP_05294059.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] gi|254968539|gb|EET26095.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC 51756] Length = 366 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 48/313 (15%), Positives = 97/313 (30%), Gaps = 14/313 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S PL + R+ ++ L + + + ++ DI S Sbjct: 55 SSGPTIVPLDLLNQDRM------NRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLS 108 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q K+ I F SL+ + L ++E G + P+L Sbjct: 109 AQIQKYGEYIGKIALPSYFVMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEG 168 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R S +E+++ + I + P + + S E V Sbjct: 169 RDFSVIEQRVFNKIIDHAVEDFTSAWEPIIKLRPKVLRSDVKSQFVSIAS--STEGVVGS 226 Query: 185 NMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + +E + IP T+ L+ L+S + ++SE V++ Sbjct: 227 VFEIEMERWSGKLYTCIPYNTVEPLREQLVSGVAADQSE-MDPSWKQMLHMDIQNAMVDV 285 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR-IT 301 + + L TL+ G V+ F + + I G Y ++ ++ Sbjct: 286 SVILASQDIPLSRARTLQKGDVLSFDRVQDARVYV--EDILIGEGRYGAFKNQYAVKLVS 343 Query: 302 DRINFDQKSLKNF 314 R ++ L++ Sbjct: 344 YRTPSEEDVLQSI 356 >gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus Ellin6076] gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus Ellin6076] Length = 293 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 6/261 (2%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + L + + ++ S + ++ + LS + N + + Sbjct: 11 FVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPYDGNGVLELNP 70 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV +LE LLG + ++ + R ++ +E++L I L + +E Sbjct: 71 SLVFPILEMLLGGTGKSSATIQ-RDITEIEQRLLDGLFRIILQDLREAWKAVTNVDFTIE 129 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 L NE V +I + + I + +P ++K Q Sbjct: 130 SMETEPQLLHLL--APNEAVVSIGIEVRIGETVGMMNIAMP-SIVIKMMRQKFDQQWSVR 186 Query: 222 NQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + F R Q + ++ + ++ D+++L+ G ++ F + L Sbjct: 187 KTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFPVERPIELVV 246 Query: 280 NGKEIYSCELGRVGKNYTIRI 300 NG ++ ++ G+ +I Sbjct: 247 NGACKFTGQVVSTGRKRACQI 267 >gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 308 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 96/279 (34%), Gaps = 12/279 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ + +L L + V I+ S FS + L Sbjct: 38 RTLVLVHENLAR----LLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRL 93 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + S+N+ ++E + G + R L+ +E + +R + + + Sbjct: 94 NPLPGMCLLEISHNIAFAIVERVFGGPGSDLQ--PQRELTEIELGIIQRVVRDTFGPMKE 151 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P +E + N E V I + + I P T+ + Sbjct: 152 AWRNVAEIDPAIEAVETNPVFIQIEN--PTEVVAAITLAVEIGEHLGHMTFAFPYSTV-E 208 Query: 209 TTLISLSSQNK---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L LS Q+ ++++S + R + + + + + L + + L++G VI Sbjct: 209 PVLSRLSPQSWLAETKHKSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVI 268 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 R + K + + G VG+ ++IT R+ Sbjct: 269 RLDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRV 307 >gi|325295396|ref|YP_004281910.1| flagellar motor switch protein FliM [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065844|gb|ADY73851.1| flagellar motor switch protein FliM [Desulfurobacterium thermolithotrophum DSM 11699] Length = 348 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 4/250 (1%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 ++ S +F++ + +S S+ NF + + LV ++ + G Sbjct: 74 VTKESVYITRFNNFMSKIPLPASYSIVSMKPLKDNFLLVLDSRLVFVVISVMFGG-PAQP 132 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + +E ++ + + L+ L + + Sbjct: 133 FKIEGREFTKLETRIIDDIVKISLSTFQHTWKDVYPVEFELKSIELNPALARIVSGNDRV 192 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 V M ++ + F PQ L + S+ + +K + Sbjct: 193 IVVECTM--DVDGYEAPFFFCFPQGMFL-PIKELIFSEAVFAEKDPVWEKHLTKKLLKTE 249 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + K L+++++ K G I + L K + +LG++ Y Sbjct: 250 LKLTLELTRKNFFLRELLSWKEGDEILLDISKDEFVKLYVEDKPKFWAKLGKIKDKYAAL 309 Query: 300 ITDRINFDQK 309 + D IN + Sbjct: 310 VVDMINGENN 319 >gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans 743B] Length = 331 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 100/274 (36%), Gaps = 11/274 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+E I + + +L + +V + S + + IHS + + + + Sbjct: 53 RTLELIHDNYARIISSYLTAQVRS----NVKVKIESVEQTTYEEFIHSIQNPTILTVFKM 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + N + V +++ LLG + E + NR + ++K + R + + L Sbjct: 109 PPLAGNILFETNPQFVYQIIDILLGGTGE--GKYKNREFTDIDKNIITRINEGLISNLKL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-- 206 S E +P +E N +E V I + I + + IP + Sbjct: 167 AWSEVLEVNPEIETIET--NPALNQTLAPHEPVALIIFTIEIGESRTYINICIPFICIEK 224 Query: 207 -LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L I + S+ + E + K + + + + T++D + L +G V+ Sbjct: 225 YLDHLEIKHWYHDSSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDVV 284 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + + + + G +GK ++ Sbjct: 285 TLERKFEDPLEVVIEERPHFLAKPGIIGKKTGVQ 318 >gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16] gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16] Length = 329 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 104/286 (36%), Gaps = 10/286 (3%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K I +S + Y + L K+ V I S + + + S + Sbjct: 49 KDQIRNLSR-IHENYARLLTTNLSAKLRSLVQIQVASVEQVPYEEYVRSIPTMTFLNVIE 107 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + I + N+ + + +LG + ++ N L+ +E K+ + A Sbjct: 108 PIPLNGRVLIEINPNIAYAMFDRVLGGHGMSFNKIDN--LTEIETKILSGLFESMLASFA 165 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + +T E P E+ + + + NE V I+++ +I N + +P +L Sbjct: 166 EAWTTVIEMEPITENIEVNPHFLQLVS--PNETVVVISLSTSIANTTGLMTICLPH-VVL 222 Query: 208 KTTLISLSSQNKSENQ----SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + L L+S + + Q S + ++ Q + + + T+++ + L G Sbjct: 223 EEILPKLTSHHWFQEQRGALSTEDQALLNKQVRQTTLEVAAELGRSTITIEEFLRLGKGD 282 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ + G++ +S + G +++TD + Sbjct: 283 VVALNQLIDEPLDVLVGGEKKFSGQPGVKRDRMALQVTDVLGGTDD 328 >gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis audaxviator MP104C] Length = 332 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 97/283 (34%), Gaps = 18/283 (6%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ + + FL + + + S F + S V + +L Sbjct: 53 RTLQTVHEGYARILSNFLSGYLRS----TIVVRVASVDQFTFDDFVRSVPIPTVLTIITL 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + +++ L G E ++ R L+ +E + ++ ++ Sbjct: 109 KPLKGMAVMETNPQFLFPIIDLLFGGPGEPPKRV--RELTDIELSVVRKLNKKLLENFQL 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P +E L + + V T+ + + +P +L Sbjct: 167 AWQDIYRMEPEIESVETNPRLHQIISPSEIVAVITLTAVVGATAR-GLINICLPH-IMLD 224 Query: 209 TTLISLSS-------QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 L+ LSS + ++ + + V + + + T++D++ L++ Sbjct: 225 PVLMHLSSFYRHVHGALVPDGTEGKRMEYW---IERAPVELSAVVGESEITVQDLLQLQV 281 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 G V+P R L + + + + G +G+ +++T + Sbjct: 282 GDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLGRYLAVQVTSLV 324 >gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus Ab9] gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus Ab9] gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 332 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 97/270 (35%), Gaps = 8/270 (2%) Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102 + L + V+++ S + +S + + F + +NN Sbjct: 65 TRSLTSFLSGYLRTVVNVTVISVDQLTYYEFSNSLNNPVFIAIIDAAPLEGPFLLEFNNN 124 Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 +L+ +LG + +L +R + +E L + + Q+ + + + +P+L Sbjct: 125 TTYAILDRILGGIGK--GELVDRDYTEIEISLLTKIVKQMLPLFKEPWGNIVDINPSLVR 182 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222 + + NE V +++ I +P T L+ + L+++ + Sbjct: 183 VETNSQFAQIIS--PNETVALCTLSLKINETEGMMNFCMPHLT-LEPIVPKLTTKFWFSS 239 Query: 223 QSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 ++ + K + + + ++ T+K+ + +IG +I K + Sbjct: 240 LKKEGRVSPELIKSKISKTYIPLTAQLGSTTITVKEFLNFEIGDIILLDKNFKDPVDIII 299 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + G Y+++IT+ I + Sbjct: 300 DKNVKFRGIPGIRNNKYSVKITEVIYKGDE 329 >gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1] gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1] Length = 322 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 14/253 (5%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 +IS + ++ K S + + ++ + + ++ L+ T++ + G Sbjct: 75 NISLSEIKTEKISDFVLKIPLPAAIAVLNVEALNGRLYMVLDTRLIYTIISIIFGG-PAQ 133 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-- 176 ++ +S + E+K+ + + LN E ++ N RL Sbjct: 134 PYKVEGKSFTKFEQKIINNLVEVLVRHLNTAW-----VELIREGEVQFVGIEDNPRRLIT 188 Query: 177 --SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 NE V I + + IE L IP +T+ I ++ +S D D Sbjct: 189 ISRNEIVIVITLEVEIEGFKGYVYLAIPMKTIDPIKDIL----RTADTESGDFRDVILSN 244 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V ++ + + +++ +K G IP R + G ++ LG Sbjct: 245 LMGTPVLLEAILPTLVMNVHELLEMKEGDFIPLDPRATDSITVKVAGVPMFKGILGESAG 304 Query: 295 NYTIRITDRINFD 307 ++I + Sbjct: 305 RKAVKIKSFVELP 317 >gi|91792691|ref|YP_562342.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91714693|gb|ABE54619.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 181 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 11/159 (6%) Query: 164 YDIDYLKKNTNR------LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 + DYL N E V + ++ ++ F + +P +++ L + Sbjct: 11 VEFDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYS-MIEPIRELLDAG 69 Query: 218 NKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +S+ Q D + + V D I + TL+DV+ L+ G +IP E Sbjct: 70 VQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIELPEH--I 127 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ Y C++G+ + ++I+++I + Sbjct: 128 MMRIEDLPTYRCKMGKSRDHLALKISEKIARPETVKTEL 166 >gi|85060031|ref|YP_455733.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] gi|84780551|dbj|BAE75328.1| flagellar motor switch protein FliM [Sodalis glossinidius str. 'morsitans'] Length = 317 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 88/288 (30%), Gaps = 13/288 (4%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S P P + R+ + I + + + + DI+ + Sbjct: 28 SAEPEIKPYDPYIQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 81 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 Q + + + L S LV +NL G ++ Sbjct: 82 IQIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPILVFIAADNLFGGDGRFPIRMEG 141 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ +R + + + + ++ N N+ + T Sbjct: 142 REFTHTEQRIIRRMLRLALEGYQEAWQAIYQLTIEYVH-AEMQVKLTNITSSPNDIMVTT 200 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 ++ I ++ F + IP +++ L++ + + + R+ + + Sbjct: 201 PFHVEIGSLIGEFYICIPFS-MIEPLRELLAN---PPLEDQSWRENLVRQIQHSELELVA 256 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 L +++ L V+ E A + +G + + + ++ Sbjct: 257 NFTDVSLQLSEILKLAPADVLNIEKPEHITAYV--DGVPVLTGHVDQL 302 >gi|254497501|ref|ZP_05110294.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12] gi|254353316|gb|EET12058.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12] Length = 358 Score = 125 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 84/266 (31%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + D +I+ K + S + S I Sbjct: 96 RAVRSFATDIYQLTAKDFEITQDQMLIIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFD 155 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V L++ G S + + Q + E ++ + ++ A L ++ Sbjct: 156 STFVYDLVDYYFGGSTQFLAQKDRTDFTATELRVMEAVTTKLIANLTLAWKPI--IQLDI 213 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNK 219 F D + +E + + ++ F I+P + + L + Sbjct: 214 SKFNDETNPQLVNIAEPDEMLLVVRFSLDFGKETGDFYFILPYTMVEPIKEQLELGASRP 273 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + + + + + I + + K+TL V++ + G IP +E L Sbjct: 274 DDEIDPNWVKSLKEELMDVELVISSAMAQTKSTLGTVMSWQAGDFIPMEMKE--IVTLDV 331 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 G Y+ LG + ++I I+ Sbjct: 332 EGTPGYTATLGTANEKRALKIIKNIS 357 >gi|313681608|ref|YP_004059346.1| flagellar motor switch protein flim [Sulfuricurvum kujiense DSM 16994] gi|313154468|gb|ADR33146.1| flagellar motor switch protein FliM [Sulfuricurvum kujiense DSM 16994] Length = 364 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 106/286 (37%), Gaps = 8/286 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + + + + M V+I S + + S F+ S+ Sbjct: 55 RAFRGIHDKMARSIASQISAIMRSIVEIQLHSVDQMTYGEFLMSLPNPTSFNVFSMKPLE 114 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 N + + ++ +L+ +LG E P NR S +E L + + + L + Sbjct: 115 GNGVLEINPSIAFPMLDRILGGKGE--PFEANREFSDIELSLFETILRVMMGTLREAWGP 172 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + P +E + + NE V + M + I + + + P L+ L Sbjct: 173 VTDLYPQVESKESSPNVVQIV--AQNEIVVMVVMEIIIGHSSGMMNICYPVIA-LEPVLP 229 Query: 213 SLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L+S++ + + +VN++ + + +L +++ L G +I Sbjct: 230 KLASRDLMLNETSSKKSRNQELQVLLGGAHVNVEVNLGEAELSLHELLELGEGDIIRLNI 289 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 +S +GK+ + ++G +I+IT I+ ++ ++K L Sbjct: 290 PADDVVNVSVDGKDRFVGQMGLRRFRKSIQITSLIDTEKDAVKRAL 335 >gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans HB-1] gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans HB-1] Length = 347 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 88/246 (35%), Gaps = 4/246 (1%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 +S S +F++ + ++ S+ + NF + LV ++ + G Sbjct: 72 VSKESVYITRFNNFLAKIPMPASYTIVSMKPFKENFLFVLDSRLVFVVISVMFGG-PAKP 130 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + +E ++ + + Q + ++ L + + NE Sbjct: 131 FKIEGREFTKLEMRIIQDIVKIALEDFEQVWKEVYPITVEMKSIELNPALARIVS--GNE 188 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 V + +M IE + F P + + S++ + I K + N Sbjct: 189 KVIVVECSMDIEGYEAPFFFCFPYG-MFMPIKDLIFSESLFAEKDPVWIRHLGEKLLKTN 247 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + KK ++K+V++ K G + + L + +LG+V Y Sbjct: 248 LRVWLELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYVEESPKFYAKLGKVKDRYAAL 307 Query: 300 ITDRIN 305 + D IN Sbjct: 308 VYDFIN 313 >gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a] Length = 319 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 106/281 (37%), Gaps = 14/281 (4%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--- 88 KI + Y + L + L +S S + K+ ++ + + L Sbjct: 39 IKILERIFENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIE 98 Query: 89 --SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 SN + SN+L T+++ +LG Q +R + +E + + + + ++++ Sbjct: 99 DDDIEESNAVLQLSNSLTFTMIDRMLGGRGTY--QDTDRDFTEIEINVMRGIVERFTSLM 156 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 +Q +++P LE + + ++E + + M +T+ + S + T+ Sbjct: 157 SQAWDGYVDTNPKLESIETNSRVISAAD--ADETMIIVAMEVTVNDSKSIVSFCMSAITM 214 Query: 207 ---LKTTLISLSSQNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 +K SS + S + + + Q + + ++ TL+DV+ L++ Sbjct: 215 DQIMKKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQV 274 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +IP L + +LG + RI + Sbjct: 275 NDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDN 315 >gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus DSM 8271] Length = 332 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 104/275 (37%), Gaps = 7/275 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 ++ + + L M ++ S + + S + S+ N Sbjct: 55 RNIHENFCRNLVTYLAGAMHTVIEAKVLSTEQVTYDEYTRSLPYPSILGIYSMDPLEGNA 114 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I S L +++ LLG + + NR L+ +E+++ + + ++ +V+ + S Sbjct: 115 LIELSPGLGFHMVDRLLGGYGKDAMK--NRDLTEIERRIVQGMLRKMISVIGEAWSEIYT 172 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ETLLKTTLI 212 +P D ++ NE V + M + IE+ + +P + +L Sbjct: 173 ITPQYVDMET--NVQFIQIVAPNEMVVVVTMEVKIEDSIGMINICLPYIVMKPILDKLNN 230 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 L + + Q+ + RK ++ V + + + T+++++ L+ G VIP + Sbjct: 231 ILLFSSAGKAQNPEDQRTIRRKIERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQ 290 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + ++ G ++I+ +N + Sbjct: 291 EPLDIYVGKFKKFAGIPGLHSNRLAVQISGVLNEE 325 >gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC 27405] gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 2360] gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20] gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM 1313] Length = 328 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 13/285 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ I + + FL + V + S + + +S V + Sbjct: 53 RTLNVIHDNYARIITNFLSGYLRTL----VQVEVISVEPIAYYEFNNSISNPAVLAVIDF 108 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + + + L++ +LG I ++ R + VE + +R I Q+ ++ + Sbjct: 109 APLTGSIILEMAPPVAYALIDRILGGKGLPIERV--REFTEVEIAIIERIIIQLVNLMRE 166 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 E P LE + + +NE V I + I V L IP +++ Sbjct: 167 PWENVVELKPRLEKIETNAQFAQIVS--ANETVALITLGAKIGEVEGMINLCIPH-IVVE 223 Query: 209 TTLISLSSQNKSENQSEDLI----DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + L+++ + ++ + +K V + + + D + L+ G V Sbjct: 224 PIVSKLNTKFWFSSVEKEATKEDKETIQKKIEYTKVPVRAILGRATIQVADFLELQPGDV 283 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + G I+IT+ I + + Sbjct: 284 ITLDSNVNGNLDVLVGDLLKFRGSPGVKKNRNAIKITEVIRREDE 328 >gi|54297705|ref|YP_124074.1| flagellar motor switch protein FliM [Legionella pneumophila str. Paris] gi|53751490|emb|CAH12908.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Paris] Length = 353 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 78/266 (29%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + D +I K + S + I Sbjct: 91 RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNPSLIGIYKFKPLRGKGIILFD 150 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V L++ G + + Q + E ++ + ++ A L ++ Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVANLIHAWEPI--IQLDI 208 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219 F D + E + + SF I+P L + L + Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGSFYFILPYSMLEPIKQQLELGASRP 268 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + I+ + + +++ + +TL V++ K+G +P E+ L Sbjct: 269 DDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSWKVGDFVPLEINEE--VTLDI 326 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 G ++ LG + ++I I Sbjct: 327 EGTPSFTATLGSTNEKRALKIIKIIR 352 >gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702] gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702] Length = 331 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 106/281 (37%), Gaps = 14/281 (4%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--- 88 KI + Y + L + L +S S + K+ ++ + + L Sbjct: 51 IKILERIFENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIE 110 Query: 89 --SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 SN + SN+L T+++ +LG Q +R + +E + + + + ++++ Sbjct: 111 DDDIEESNAILQLSNSLTFTMIDRMLGGRGTY--QDTDRDFTEIEINVMRGIVERFTSLM 168 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 +Q +++P LE + + ++E + + M +T+ + S + T+ Sbjct: 169 SQAWDGYVDTNPKLESIETNSRVISAAD--ADETMIIVAMEVTVNDSKSIVSFCMSAITM 226 Query: 207 ---LKTTLISLSSQNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 +K SS + S + + + Q + + ++ TL+DV+ L++ Sbjct: 227 DQIMKKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTMLTLRDVLNLQV 286 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +IP L + +LG + RI + Sbjct: 287 NDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDN 327 >gi|54294679|ref|YP_127094.1| flagellar motor switch protein FliM [Legionella pneumophila str. Lens] gi|53754511|emb|CAH15995.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Lens] Length = 353 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 75/266 (28%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + D +I K + S + I Sbjct: 91 RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFD 150 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V L++ G + + Q + E ++ + ++ L ++ Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLTHAWEPI--IQLDV 208 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219 F D + E + + +F I+P L + L + Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFLLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 268 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + I+ + + + + + +TL V+ K+G +P E+ L Sbjct: 269 DDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEE--VTLDI 326 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 G ++ LG + ++I I Sbjct: 327 EGTPSFTATLGSANEKRALKIIKIIR 352 >gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1] gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1] Length = 428 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 89/287 (31%), Gaps = 12/287 (4%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83 + + + S+ + + + + +++ S +S + S F Sbjct: 88 GKDQMRAMHSLHESIARNFGASISGLLRTM----IEVKLLSVDQLTYSEFVFSLDNPSCF 143 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + ++ + + L +++ +LG + R L+ +E +L R + Sbjct: 144 NVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGDP-VPGETIRRPLTEIETRLMCRVVELFL 202 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + P++ L + NE + + + L IP Sbjct: 203 EQIVPAWENVIQLEPSIHTTESNPQLAQIV--PPNEVAILVGFEVLLGKNRGMMNLCIPF 260 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLK--DVVTL 259 ++ K LS + RK +D + L ++ ++ D++ L Sbjct: 261 NSIEKYN-AKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDL 319 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +G +I + LS ++ G +++ + Sbjct: 320 NVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEP 366 >gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus AHT2] gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 84/269 (31%), Gaps = 3/269 (1%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 ++ + + + + +D++ + +F + + ++ + + Sbjct: 58 AISDAFMRSMRNSLASALRRILDVTAVPMELERFGAFVRTLPVPSSLQIFKMAPFRGHAL 117 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 I LV L+E+ LG S ++ R + +E++L +R + + + + + Q Sbjct: 118 IVLEPRLVFNLVESFLGGSGSRNVRIEGRDFTAIEQRLIRRVVNLLLTDMEKAWYSLQPL 177 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLS 215 K + V + ++ S IP L + + Sbjct: 178 KVQYVRSEINPQFAKIC--QPEDVVIINRYEVDMDRAVGSITTCIPMSNLESVRNRLMTT 235 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 Q + + + V + ++++ L++G + R Sbjct: 236 FQREQSEEDIAIQRTITENIKNAEVEFKVELGRTTVPAREIINLQVGDTLTLDRRTDEQL 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304 + K Y G KN + I ++ Sbjct: 296 PVFVASKRKYMATPGVHRKNNAVLIKKKV 324 >gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC30] gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC10] gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus EC20] Length = 332 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 12/278 (4%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + K + ++ +V + + + + IHS + + S I + Sbjct: 58 FSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPKFTLLGLFHSQPLSGIQMIEMNP 117 Query: 102 NLVITLLENLLGASHETIPQLYN------RSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 L + L+E L G + +S + +E + + +AQ V Sbjct: 118 QLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETAILEEVVAQFVRVYQNVWKDIVA 177 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 L+ L + N NE V + + I V L IP + + LS Sbjct: 178 LDSVLDGIDTNPQLMQ--NMSPNEPVVLVTFTIKIFEVKHFINLCIPY-VFFEGIIDKLS 234 Query: 216 SQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +N ++ ++D + + +N++ + + +L + + L+ G VI + Sbjct: 235 FRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKIT 294 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +GK + + G+ I + D++ +Q+ Sbjct: 295 EPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 332 >gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3] Length = 319 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 105/281 (37%), Gaps = 14/281 (4%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--- 88 KI + Y + L + L +S S + K+ ++ + + L Sbjct: 39 IKILERIFENYSRHLSSYITGLLRLYCKVSLASIEEQKYFEFSNALPDYTIMGIVDLGIE 98 Query: 89 --SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 SN + SN+L T+++ +LG Q +R + +E + + + + ++++ Sbjct: 99 DDDIEESNAILQLSNSLTFTMIDRMLGGRGTY--QDTDRDFTEIEINVMRSIVERFTSIM 156 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 +Q ++ P LE + + ++E + + M +T+ + S + T+ Sbjct: 157 SQAWDGYVDTKPKLESIETNSRVISAAD--ADETMIIVAMEVTVNDSKSIVSFCMSAITM 214 Query: 207 ---LKTTLISLSSQNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 +K SS + S + + + Q + + ++ TL+DV+ L++ Sbjct: 215 DQIMKKFSAKFSSGKRAGSPTKETERKENLMSTLSQSELTVTAVLDDTVLTLRDVLNLQV 274 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 +IP L + +LG + RI + Sbjct: 275 NDIIPLNKPITDNVQLKVGSTCWFDGKLGTLNGKKAFRIDN 315 >gi|148359336|ref|YP_001250543.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Corby] gi|148281109|gb|ABQ55197.1| Flagellar motor switch protein FliM [Legionella pneumophila str. Corby] Length = 353 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + D +I K + S + I Sbjct: 91 RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNPSLIGIYKFKPLRGKGIILFD 150 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V L++ G + + Q + E ++ + ++ A L ++ Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVANLIHAWEPI--IQLDV 208 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219 F D + E + + +F I+P L + L + Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 268 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + I+ + + +++ + +TL V++ K+G +P E+ L Sbjct: 269 DDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSWKVGDFVPLEINEE--VTLDI 326 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 G ++ LG + ++I I Sbjct: 327 EGTPSFTATLGSTNEKRALKIIKIIR 352 >gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47] Length = 428 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/287 (11%), Positives = 89/287 (31%), Gaps = 12/287 (4%) Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83 + + + S+ + + + + +++ S +S + S F Sbjct: 88 GKDQMRAMHSLHESIARNFGASISGLLRTM----IEVKLLSVDQLTYSEFVFSLDNPSCF 143 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + ++ + + L +++ +LG + R L+ +E +L R + Sbjct: 144 NVIKPLPLEGHWVLDIAPGLAYAIIDRMLGGDP-VPGETIRRPLTEIETRLMCRVVELFL 202 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + P++ L + NE + + + L IP Sbjct: 203 EQIVPAWENVIQLEPSIHTTESNPQLAQIV--PPNEVAILVGFEVLLGKNRGMMNLCIPF 260 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLK--DVVTL 259 ++ K LS + RK +D + L ++ ++ D++ L Sbjct: 261 NSIEKYN-AKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDL 319 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +G +I + LS ++ G +++ + Sbjct: 320 NVGDIITTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEP 366 >gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2] gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2] Length = 326 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 88/267 (32%), Gaps = 5/267 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + +VD++ + KF+ + S + + + Sbjct: 60 ERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPVPTSLHVFRMEPLRGHGLVVL 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + LV L++ G ++ R + +E+ + K+ + + + + + Sbjct: 120 ESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVVVACLKDIEKAWLPIEPVKTS 179 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L L + V + +E A + VL +P +++ L+S + Sbjct: 180 LIRSEMNPQFAAIV--LPTDLVIVTRFEIELEQAAGNLVLCLPYA-MIEPLRAKLASGFQ 236 Query: 220 SENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +E + D + VN+ ++ + + + ++ L+ G VI + K Sbjct: 237 AETEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIYLQPGDVIQLDNDAKDMLTG 296 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRI 304 +G G R+ ++ Sbjct: 297 YVDGLPKVRGFAGVQRGFQAFRVEKKL 323 >gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens GS-15] gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens GS-15] Length = 327 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 100/266 (37%), Gaps = 8/266 (3%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107 ++ V+I S KF +H+ + I + LV T+ Sbjct: 65 GTLSNRLGRIVEIKKVGAASFKFDDFLHTMPSPVAMAVYKADPLKGAALIAFDSTLVFTI 124 Query: 108 LENLLGASHET-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 ++ +LG + + +P + NR +++E +L ++ + + A L + + + + Sbjct: 125 VDCILGGTGSSVVPTVGNRMFTSIELRLVQKIVMDVLADLEKAWAPIYATKMGFLR---M 181 Query: 167 DYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 + + N + E+ V T+ M + IE + + +P T + L + + + + Sbjct: 182 EMNPRLVNIVPPEYQVVTMEMEIQIEEIIGKMIFAVPLTT-IDPVREKLKNGAQVDMMAI 240 Query: 226 DLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 D F ++ + +++ + ++ +++ L G I + ++ G Sbjct: 241 DPQWSFRLSKELLEAPLDLSVEVGGAIISMDELLNLTPGDTIMLDTPCNSDLVVKVGGVS 300 Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309 + G N +IT I ++ Sbjct: 301 KFMSAPGLRHGNKAAQITTIIGKGRE 326 >gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus ATCC 12755] Length = 336 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 97/278 (34%), Gaps = 12/278 (4%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + K + ++ +V + + + + IHS + + S I + Sbjct: 62 FSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPKFTLLGLFHSQPLSGIQMIEMNP 121 Query: 102 NLVITLLENLLGASHETIPQLYN------RSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 L + L+E L G + +S + +E + + +AQ V Sbjct: 122 QLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETAILEEVVAQFVRVYQNVWKDIVA 181 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 L+ L + N NE V + + I V L IP + + LS Sbjct: 182 LDSVLDGIDTNPQLMQ--NMSPNEPVVLVTFTIKIFEVKHFINLCIPY-VFFEGIIDKLS 238 Query: 216 SQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +N ++ ++D + + +N++ + + +L + + L+ G VI + Sbjct: 239 FRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKIT 298 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +GK + + G+ I + D++ +Q+ Sbjct: 299 EPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 336 >gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2] Length = 332 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 97/278 (34%), Gaps = 12/278 (4%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + K + ++ +V + + + + IHS + + S I + Sbjct: 58 FSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPKFTLLGLFHSQPLSGIQMIEMNP 117 Query: 102 NLVITLLENLLGASHETIPQLYN------RSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 L + L+E L G + +S + +E + + +AQ V Sbjct: 118 QLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETAILEEVVAQFVRVYQNVWKDIVA 177 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 L+ L + N NE V + + I V L IP + + LS Sbjct: 178 LDSVLDGIDTNPQLMQ--NMSPNEPVVLVTFTIKIFEVKHFINLCIPY-VFFEGIIDKLS 234 Query: 216 SQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +N ++ ++D + + +N++ + + +L + + L+ G VI + Sbjct: 235 FRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQMSLSEFLHLEEGDVIKLDKKIT 294 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +GK + + G+ I + D++ +QK Sbjct: 295 EPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQKL 332 >gi|258592491|emb|CBE68800.1| putative Flagellar motor switch protein fliM [NC10 bacterium 'Dutch sediment'] Length = 333 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 93/275 (33%), Gaps = 9/275 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + K + + V+I T + ++ I S + + Sbjct: 57 LHDRFAKQMGGTLSPLLRTFVEIRPTLVEQMAYAEYIASVAYPACLGIFGMKPLKGGAIV 116 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 L+ +++ +LG + R L+ +E+ L + + + L S Sbjct: 117 ELPPRLISYIIDRILGGAGRI--SDVARELTEIERALVSKLLRRTLEDLRNAWSRVSLFQ 174 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 L + + + V I ++ I +V L P +L+ + +LS + Sbjct: 175 FELLNLEVNPGFLQL--AAPTDMVILIGFDVKIGDVEGMMSLCFPFS-MLEPVIPNLSLR 231 Query: 218 NKSENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 E+ + A + + +++ + T+ ++ LK G ++ + Sbjct: 232 RWIAGHREETDEVGAAEIAKAMPAVGLSVRALLGSIPLTVHELSFLKAGDIVRLDIGASS 291 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +L G Y ++G + ++I I+ ++ Sbjct: 292 LGVLEVEGVPKYVVKVGTSHRKRAVQIVADISEEK 326 >gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252] Length = 348 Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 94/268 (35%), Gaps = 7/268 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L ++ VDIS ++ +S + S + + Sbjct: 67 EAFARDLSVYLSAQLRTLVDISLSAIDQVLYSEFVMSSAPPSALYVVDVHPLHQKIVLEL 126 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L I ++E L G + + R LS +E+++ + + + L + + Sbjct: 127 DPRLAIFMVEKLFGGPGIFLRKP--RELSQIERRIMDKVMMRAFRELEKAWKQIHDIHLE 184 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 F + + E ++I S + P L + S Q + Sbjct: 185 EAGFESNAEFVQILPGV--EPALVATFEVSIYEQRSFINICYPYILLERMLGHSAMKQWR 242 Query: 220 SENQSE---DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 S + +E + + + ++ V + + + L +++TL++G VI R Sbjct: 243 SSSTTEVPPAVRQRYEEQLEKIEVELRAVMGRTRIKLSEMMTLEVGDVIVLERRVNQPVQ 302 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 + +E + GR GK+ +RI + + Sbjct: 303 VYIGEREKFRAIPGRSGKHRALRILEVV 330 >gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4] Length = 327 Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 101/277 (36%), Gaps = 11/277 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T++ + + + FL + ++ ++ + F I S + +L Sbjct: 52 RTLQLLHENWARILSGFLSGYLRT----NISVTVSGVDQLTFDDFIRSLPAPTLLIIFTL 107 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + + +++ L G E ++ R + +E + ++ ++ L+ Sbjct: 108 EPLPGAAVMETNPSFLFPVIDLLFGGPGEMPEKI--REFTEIEVSVGRKLAEKLLENLSF 165 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + +P +E L++ + V T+ ++ E+ L P +L+ Sbjct: 166 AWRDVFKVTPAVEGVETNPRLQQIISPSEVVAVITLTTSVGTESR-GLINLCFPH-MMLE 223 Query: 209 TTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L LS SE ++ V + + + ++++ + L++G V+ Sbjct: 224 PVLSQLSRFYHMRPSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDVL 283 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 R + + Y + G +G++ ++IT Sbjct: 284 VLDRRFGEDLDVYVGKIKRYRAQPGLLGRHLAVQITG 320 >gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484] Length = 315 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 104/295 (35%), Gaps = 12/295 (4%) Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65 HK PL L ++ I + L + L + M + Sbjct: 29 THKEVKPLDISTLEHIS-----ASRIAGLELIL-ERWVSSLKRSLSSVMVSIPAVLKEGV 82 Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125 +FS + ++ + ++ + +L G ++ + Sbjct: 83 SVVRFSEFVSQLPFPSAIGFFNVHPLRGVSMLVLDPRIIYMTVSSLFGG-PPKPYKIEGK 141 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185 + +E ++ ++ + L + +T E + + + R +F+ Sbjct: 142 EFTKIELRIVQKILEICYRELEEVWNTVMEVK-VIPQGLETNPSLLTIARPKEKFIVL-K 199 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +++E L IP+E+L + + +E +S ++ + + ++ +N++ Sbjct: 200 LLVSLEGSEGYMYLAIPEESLDPYKEVL---KGITELRSPEVSNKLLQALEEIPLNLEVI 256 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + +K L D++ +K+G + + + +G LG+VGK I+I Sbjct: 257 LGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKALAFLGQVGKRKAIKI 311 >gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [delta proteobacterium MLMS-1] gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor switch protein FliM [delta proteobacterium MLMS-1] Length = 330 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 5/270 (1%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 ++ + + + + +DI+ + +F + + ++ + + Sbjct: 58 AISDTFMRSVRTSLSAALRRILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHAL 117 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 I LV TL+E+ LG S ++ R + +E++L +R + + L + + Q Sbjct: 118 IVLEPKLVFTLVESFLGGSGARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPL 177 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISL 214 K + V ++ ++ A S IP L +K+ L++ Sbjct: 178 KVQYVRSEINPQFAKIC--QPEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTT 235 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + +SE V+I + K D++ L +G I R + Sbjct: 236 FQREQSEEDIAIQRT-IVDNIKNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQ 294 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRI 304 + G Y G N + I ++ Sbjct: 295 LPVYVAGMRKYMATPGVHRNNNAVLIKRKV 324 >gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912] gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912] Length = 332 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 8/274 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 Y + L F ++ + + S + + I S + L+ S + IG Sbjct: 60 ENYARMLSTYFSAQLRTWMHLDVISVEQLPYEEFIRSMPQLSTLLVVDLAPLSGRWVIGI 119 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 ++ +L+ LLG + R+ + +E + +R+ ++ VL E Sbjct: 120 GPDVAFVMLDRLLGGPGLELA--GARAFTEIETTVFERSWSRSLGVLGDAWKGIVEDLRP 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLIS---L 214 F + + ++ ++++M I + +P TL L L S L Sbjct: 178 TLSFIEFNPQFLQIAAPNDTVAV-VSVSMRIMETTGLMHIGMPHLTLERLLPKLSSQHML 236 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + V I + D++ L G VIP Sbjct: 237 GMGQAGRALDPAREEALRERLRAAPVEIRAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRP 296 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + + Y G ++IT+ + ++ Sbjct: 297 VEIYVGDRVKYLGRPGVDHGRLAVQITEIADDER 330 >gi|225850288|ref|YP_002730522.1| flagellar motor switch protein FliM [Persephonella marina EX-H1] gi|225646133|gb|ACO04319.1| flagellar motor switch protein FliM [Persephonella marina EX-H1] Length = 323 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 88/265 (33%), Gaps = 5/265 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K ++ + + +F+ + ++ ++ N + Sbjct: 54 ERWIKIYRDDVRKITPRINMVWRENIYITRFNTFMLKIPLPSSYNIFTIRPLKENALLII 113 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + LV T++ L G ++ R + +E K+ + + ++ Sbjct: 114 DSRLVFTIISVLFGG-PAKPFKVEGREFTKLETKIVEDLVNSALKSFESVWNSIYPVVIE 172 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L L K + NE V + M I+ + F PQ L I + + Sbjct: 173 LRSIELNPNLAKIVS--PNEKVVVVECRMDIDGYEAPFYFCFPQSMFLPIKEIIYTQVSV 230 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 SE K +LN+ + I + ++D+++ K G + + L Sbjct: 231 SE--DPIWKKNLDEKIRKLNLKLTMEIAKLQFKIRDILSWKEGSELDLGVTKDDIFRLYV 288 Query: 280 NGKEIYSCELGRVGKNYTIRITDRI 304 + ++ +LG+V Y I + + Sbjct: 289 EDRHKFNVKLGKVNNKYAAMIVEPV 313 >gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8] gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855] gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8] Length = 372 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 7/272 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L ++ VDIS T+ +S + S Sbjct: 67 ESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLREDELEYRSIFEI 126 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV+ +E L+G + +R +S +E+++ R + + L + E S Sbjct: 127 DPRLVVYTIEKLMGGDGQ--LMDESREVSPIEQRIMSRVMKRAYRKLEESWRKAYELSVE 184 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-- 217 F + + E + ++ + + S + P L + S Q Sbjct: 185 EVAFESNAEFVQII--PAAEPALVASFDVRVYDEPSFINICYPYLMLEQMLGRSGMEQWI 242 Query: 218 -NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + ++ D + + VN+ + + ++ L+ G VIP Sbjct: 243 SSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDVIPLDRETDDPIK 302 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + NG++ + GR G+ +RIT + + Sbjct: 303 VFVNGEQKFEAVPGRSGRQRALRITAAESPEN 334 >gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans DSM 771] gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans DSM 771] Length = 334 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 9/268 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L Y + L + + + S F + S + + SL + + Sbjct: 61 LHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLTGPAVL 120 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + + +++ L G + + ++ R L+ +E + K+ I ++ L E + Sbjct: 121 ETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQDLYEVT 178 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSS 216 L+ L + N E + + + I + L +P +L+ L LS Sbjct: 179 AELQSIETNPRLMQVMN--PGEIIALLTFSTVIGGTSRGLINLCLPY-LMLEPVLSKLSI 235 Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 ++ + D R Y Q + + K +++D + L+ G V+ R Sbjct: 236 HYRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDRRIDE 295 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRIT 301 L K Y + G +G+ ++IT Sbjct: 296 DVDLFLEEKLKYKVQPGTMGRFMAVQIT 323 >gi|296107383|ref|YP_003619083.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99 Alcoy] gi|295649284|gb|ADG25131.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99 Alcoy] Length = 353 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 75/266 (28%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + D +I K + S + I Sbjct: 91 RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFD 150 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V L++ G + + Q + E ++ + ++ L ++ Sbjct: 151 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLIHACEPI--IQLDV 208 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219 F D + E + + +F I+P L + L + Sbjct: 209 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 268 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + I+ + + + + + +TL V+ K+G +P E+ L Sbjct: 269 DDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEE--VTLDI 326 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 G ++ LG + +++ I Sbjct: 327 EGTPSFTATLGSANEKRALKVIKIIR 352 >gi|52842019|ref|YP_095818.1| flagellar motor switch protein FliM [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629130|gb|AAU27871.1| flagellar protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 355 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 32/266 (12%), Positives = 75/266 (28%), Gaps = 5/266 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + D +I K + S + I Sbjct: 93 RAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNPSLIGIYKFKPLRGKGIILFD 152 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 + V L++ G + + Q + E ++ + ++ L ++ Sbjct: 153 STFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTKKLVTNLIHACEPI--IQLDV 210 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLSSQNK 219 F D + E + + +F I+P L + L + Sbjct: 211 TKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFILPYSMLEPIKQQLELGASRP 270 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + + I+ + + + + + +TL V+ K+G +P E+ L Sbjct: 271 DDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAWKVGDFVPLEINEE--VTLDI 328 Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305 G ++ LG + +++ I Sbjct: 329 EGTPSFTATLGSANEKRALKVIKIIR 354 >gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus propionicus DSM 2032] gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus propionicus DSM 2032] Length = 345 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 96/285 (33%), Gaps = 9/285 (3%) Query: 22 TGKLGDKKT--IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79 T G+ + ++ + S + L + + + F + K Sbjct: 55 TRGSGEMRVPNLDIVLDSFARKFSTSLTNTLM----RNFIVEREDITTTNFQQSLLDLKS 110 Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139 +S + TLLE +LG+S + +R+L+T+E + K + Sbjct: 111 QGAVGIYGISPLKHGCLFHFDTLMAFTLLEIMLGSSRSSESLPLDRNLTTIEMFVLKTIM 170 Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFV 198 I L + E L + ++ N E + T N+ + N + Sbjct: 171 QDICNELQTAMRPVVELQAQLTKVEN-NFRLVNIVEPEVEVLVT-RFNIQLGNELCGQMR 228 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 LIIP TL + ++ + + AR+T ++ + R L T++ ++ Sbjct: 229 LIIPYLTLEPLREKFKALVTITQAAANTWTEIIARETLEMESQVIARSGLITMTIRRILG 288 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 L+ G +I + + + ++ G +T R Sbjct: 289 LQPGDIIDLQYDPDRPLTVLVEDQPLFLAIPGERNGKKAFHVTGR 333 >gi|83955115|ref|ZP_00963771.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] gi|83840444|gb|EAP79617.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1] Length = 318 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 103/279 (36%), Gaps = 6/279 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 +G + L + M + S S +I + + + + + Sbjct: 39 IGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEGLPKPTFLAVGTGHPFVGEILV 98 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 +++T +E +LG + + + + +E +R + + A L + +S ++ Sbjct: 99 VMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGERLASAVFAELERSLSVVGAAN 158 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLS 215 L+ + + + +++T+ + L+IP + L + L + Sbjct: 159 LELDRIET--EAEGAAIAKNTSLCARLRLSLTLAGNTGNLDLVIPYDALEQILPDLGKVY 216 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ +Q + + NV++D ++ L+ +++ + G I F E A Sbjct: 217 FGDRMVSQD-QWRGLIGAQIERANVDLDVVLSENVFPLQKIMSWRPGDTIDFGIEEGRDA 275 Query: 276 ILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLKN 313 ++ +++ LG R ++IT+++ + + Sbjct: 276 TVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314 >gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC 25644] gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC 25644] Length = 336 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 95/276 (34%), Gaps = 11/276 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + K + ++ +V + + + + +HS + + + + Sbjct: 63 FSKMTGNVLSTQLRTNVSVDLAAIEQISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEINP 122 Query: 102 NLVITLLENLLGASHETIPQLYNR-----SLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 L ++E L G + S S ++ L + +I V E Sbjct: 123 QLCSLMVELLCGGLDVRTQHPDEKIPSIESFSDIDLALMRELFKEIVNVYKTSWKDIVEL 182 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + + L + NE V + + + +++ L IP + L LS Sbjct: 183 NSKFDTIDTNPQLSQA--MSPNEPVVLVTFTVKVFGISTFINLCIPY-VFFEGILDKLSI 239 Query: 217 QNKSENQSEDLID---PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 +N ++ S+D D R + + I+T++ + + D + L+ G VI + + Sbjct: 240 RNWFDSSSDDNEDDSLEIKRGLNNVEMVIETKLGDAQMSFADFLNLEAGDVIRLDKKTTS 299 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 G+ + + G+ I + D++ ++ Sbjct: 300 PLETYIEGEPFFYVKPGQKDGQLAIELLDKMEGEED 335 >gi|83944184|ref|ZP_00956640.1| possible flagellar motor switch protein FliM [Sulfitobacter sp. EE-36] gi|83845051|gb|EAP82932.1| possible flagellar motor switch protein FliM [Sulfitobacter sp. EE-36] Length = 318 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 103/279 (36%), Gaps = 6/279 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 +G + L + M + S S +I + + + + + Sbjct: 39 IGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEGLPKPTFLAVGTGHPFVGEILV 98 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 +++T +E +LG + + + + +E +R + + A L + +S ++ Sbjct: 99 VMDQAVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGERLASAVFAELERSLSVVGAAN 158 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLS 215 L+ + + + +++T+ + L+IP + L + L + Sbjct: 159 LELDRIET--EAEGAAIAKNTSLCARLRLSLTLAGNTGNLDLVIPYDALEQILPDLGKVY 216 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++ +Q + + NV++D ++ L+ +++ + G I F E A Sbjct: 217 FGDRMVSQD-QWRGLIGAQIERANVDLDVVLSENVFPLQKIMSWRPGDTIDFGIEEGRDA 275 Query: 276 ILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLKN 313 ++ +++ LG R ++IT+++ + + Sbjct: 276 TVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314 >gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila LSv54] gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea psychrophila LSv54] Length = 323 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 6/268 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 S Y L + + I +S F + L Sbjct: 62 SFARHYSILLSNQLQ----RTISIERIKLESFDFQDVFDKIAHPGAIGMLDLPPLQQGGL 117 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 I + +L +L+E LLGAS + NR +T+E + K I L++ S Sbjct: 118 ILFNPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGLDKAFSPLVNM 177 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + +L L T+ ++ V + + + +L+IP L Sbjct: 178 NSSLVKIDSKPRLMSITD--PDDEVIACTFRVILGKDSGEILLLIPLAALEVLHEDLQHL 235 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 S ++ A + ++ +I + + ++ D++ L++G ++ + Sbjct: 236 LRASAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILEVDYDPSKPLK 295 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 + + G I +T+RI Sbjct: 296 VLVENSPKFYGIPGTHNGKKAISLTERI 323 >gi|90418398|ref|ZP_01226310.1| possible flagellar motor switch protein fliM [Aurantimonas manganoxydans SI85-9A1] gi|90338070|gb|EAS51721.1| possible flagellar motor switch protein fliM [Aurantimonas manganoxydans SI85-9A1] Length = 348 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 31/282 (10%), Positives = 98/282 (34%), Gaps = 7/282 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + +D++ +S + + + +++ S + S + Sbjct: 70 MAETWAASAATKISAIAGASLDLTLREVESDFGPELDEAEDDGTMYAPLSSPRFRSPGYA 129 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + + L+ L A + + +++ + K +A I+ E Sbjct: 130 MLDHEALEALISALFAAEPSPPGTPPR-TPTDLDRSIVKLGLATIADSALSVFEMIGELR 188 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISL 214 ++ + + L + ++ F+ ++T+ +++++ +P L+ Sbjct: 189 LSVGNIINAAELGEQLAGETDRFI-LFRFDLTVASLSTTITFALPGALFAPHLRFLREPP 247 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++ E + + ++ + + KK L + +G IP + Sbjct: 248 KM--PPPDREESWSNAIKESFAKSDLRLSAIVTKKKIDLGTIAGFAVGDTIPLDVSANSL 305 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + ++ +GR +Y +RI +RI+ ++ + + L Sbjct: 306 IAIECEDQPLFRAHMGRSRDSYVVRIEERIDPAEEFIDDILS 347 >gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium yellowstonense SS-5] gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium yellowstonense SS-5] Length = 322 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 30/268 (11%), Positives = 89/268 (33%), Gaps = 4/268 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K + + + + +S + +F I ++ ++ + Sbjct: 53 EKWVKIFREEIRAEFPVVNMVSKGKIATMRFGDFIGKIPLPASYTIFNMKPLKDPSLLII 112 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +V L+ L G ++ R + +E ++ ++ + + + Sbjct: 113 DSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDIYPIEIE 171 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + + + + + + M + IE + PQ L L + Sbjct: 172 RKSI-EFNPILVRIVSHAEKVIVAEIM-IDIEGLEVPLTFTFPQ-MLFLPIKDILFTDTF 228 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 S + +K ++N+N+ ++ +++ + ++G I ++ L Sbjct: 229 GSEVSPEWRKELIKKLLKVNLNLTLELDKFSVLVEEFLNYEVGTEIILNKKQSEELDLKV 288 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFD 307 K + +G++ K + IT I + Sbjct: 289 EDKVKFKASIGKLDKKFAAMITKIIKEN 316 >gi|117926842|ref|YP_867459.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1] gi|117610598|gb|ABK46053.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1] Length = 332 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 89/265 (33%), Gaps = 5/265 (1%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L +K+ +V + + + F +H+ + + + S I +++ Sbjct: 71 LSFKLTQKVGREVHVQPKTTTNQVFGRFLHTVEPPIFINILRVEPSQSMALISIDGDVMY 130 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 T+LE G ++ R+ S E K+ R + + S L Sbjct: 131 TVLEGFFGGPGDSERPF--RNFSPFEMKVIDRIMDVAREQIELSWKKLDP-SFRLVLARW 187 Query: 166 IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNKSENQ 223 + + +E V I ++ + + + + P L K L Q + Sbjct: 188 ENQPQFAAVMPLDETVFLITFSVEVGDAEGNITICFPAVILELFKQQLKQGFQQKEEVEG 247 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 + +D + + V++ + + +++ ++ LK+G + G + Sbjct: 248 ASAWMDALKNELSLVRVDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEMAVQIGGMD 307 Query: 284 IYSCELGRVGKNYTIRITDRINFDQ 308 + C G V IRIT + + Sbjct: 308 KFMCHAGVVDGKRAIRITRTVQPQK 332 >gi|333004050|gb|EGK23584.1| flagellar motor switch protein FliM [Shigella flexneri K-272] gi|333017823|gb|EGK37130.1| flagellar motor switch protein FliM [Shigella flexneri K-227] Length = 268 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 8/242 (3%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64 S + P P R+ + I + + + + DI+ + Sbjct: 30 SGESDIRPYDPNTQRRVVRERLQALEI------INERFARHFRMGLFNLLRRSPDITVGA 83 Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + + + L + S +LV ++NL G ++ Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 R + E+++ R + + ++ N N+ V Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNT 202 Query: 185 NMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ I N+ F + +P + L+ S N+ ++ D R+ + + Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262 Query: 244 TR 245 Sbjct: 263 AN 264 >gi|329897652|ref|ZP_08272176.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC3088] gi|328921101|gb|EGG28510.1| Flagellar motor switch protein FliM [gamma proteobacterium IMCC3088] Length = 340 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 87/286 (30%), Gaps = 13/286 (4%) Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78 R G + I+ I+ ++ L ++ + + VD + ++ F + Sbjct: 46 DRTIGI--NLGAIDMITERFTRHFRLGLLEVLRSSPKIHVD----AVKTVVFEKYLSDLA 99 Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKR 137 + ++ + + N+V L+N G I R + E ++ Sbjct: 100 PPLSVNTIRINPLRGSSLVVLDPNVVFAALDNFFGGFGRGIAGLPPGRMFTPTETRIINI 159 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + I A L + + + + V +++ ++ V Sbjct: 160 MMELIFASLKEAWAPIMPIECENVSAEINPQFVQIADEKDLVVVCHLSVEISEAEV-GRI 218 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLK 254 ++ P +L + + D D + + + L Sbjct: 219 DIVYPFASLKPIRDELRARVQSDTDTPRDAGLWHDDLETSASYAELEAVVTLGETEIPLH 278 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 +L+ G V+ F E I G +++ ++G V I+I Sbjct: 279 QFQSLRSGDVLWFKKYEDAQMI--IEGVPVFAADVGTVKGQVAIKI 322 >gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7] Length = 333 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 98/275 (35%), Gaps = 8/275 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K + I ++ +VD+ S + F +HS + + I Sbjct: 61 EEFAKIIGNILSTQIRTNVDVKLASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIEL 120 Query: 100 SNNLVITLLENLLGAS--HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + L + L++ L G+S + + S + +E + + + S + Sbjct: 121 NPQLCLQLVDLLCGSSEIRKNDEVMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLK 180 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 ++ + + NE V + + + + V + + +P + L LS + Sbjct: 181 VKIDSTETNPQILQT--MSPNEPVVLVTLTVELHGVKTFINVCVPY-IFFEGILEKLSLR 237 Query: 218 NKSENQSEDLIDP---FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 N ++ E + + VN++ + TL++ + L++G +IP + Sbjct: 238 NWFHSEKETDHTDSGKLEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDP 297 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 +LS Y + G GKN + + I + Sbjct: 298 LVLSVEELPRYFVKPGLKGKNMAVEVLQYIGGETD 332 >gi|213028082|ref|ZP_03342529.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 247 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 8/235 (3%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + + +E I+ ++ L + + DI+ + + Sbjct: 20 DIRPYDPNTQRRVVRER--LQALEIINERFARQFRMGLFNLLR----RSPDITVGAIRIQ 73 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 74 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 133 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 E+++ R + + ++ N N+ V ++ Sbjct: 134 HTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPNDIVVNTPFHV 192 Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 I N+ F + +P + L+ S ++ ++ D R+ + + Sbjct: 193 EIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELEL 247 >gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4] Length = 331 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 93/275 (33%), Gaps = 8/275 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K I ++ +V + S + F +HS + I Sbjct: 60 EEFAKISGNILSTQVRTNVGVQLASIEQVSFDEFVHSVPRFTLMGLFHSVPLDGTQIIEI 119 Query: 100 SNNLVITLLENLLGAS--HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 S L + L++ L G++ I +L S + +E + + + E Sbjct: 120 SPQLCLQLVDLLCGSTEIRSNIDELSKESFTDIEMAILEEILNNFINAFELAWRDVVEVK 179 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 L+ + NE V + + + V + L +P + L LS + Sbjct: 180 GKLDSTET--NPQMMQTMSPNEPVVLVTFTVELYGVKTFINLCVPY-IFFEGILEKLSLR 236 Query: 218 NKSENQSEDLIDP---FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 N ++ E + + VN++ + TL++ + L++G +IP + Sbjct: 237 NWFHSEKETDHTDSGKIEKSLHSAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDP 296 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 ILS Y + G GKN + + I + Sbjct: 297 LILSVEKLPRYFVKPGLQGKNMAVEVLQYIGGETD 331 >gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter proteolyticus DSM 5265] Length = 326 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 15/285 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +TI+ + + L + M IS S + I S + + Sbjct: 49 RTIQMLHENFARGASTELAGYLRSAM----SISIVSVDQVTYQEYIRSLSDPTFMYLVPI 104 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 ++ S + V +++ LLG + P R L++VE L R + + Sbjct: 105 ID-VTSVIFEMSLDFVFAIIDKLLGGPGK--PLREVRELTSVEATLMNRVMDVYLKHWLE 161 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLS-NEFVTTINMNMTIENVASSFVLIIPQETLL 207 NL ++Y + ++ V I + + + +P + Sbjct: 162 AWKPI--VQWNLGKP-TLEYSPGFVQIMPGSDVVIVITYEEKLGEKTAIGTICVPYMAM- 217 Query: 208 KTTLISLSSQNK---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + + +L++ S+ +D + V + + + +++ +G V Sbjct: 218 EGFVQNLTAHRWFGVSKPTPDDWKTTLMEVIEDITVEVSAVLGEASVGIGEILKWNVGDV 277 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I R L G G + + +T R D+K Sbjct: 278 IELSRRSDEEVDLLVEGNLFAKGIPGIYQRRKALLVTGRSEEDRK 322 >gi|157736463|ref|YP_001489146.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018] gi|157698317|gb|ABV66477.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018] Length = 368 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 104/292 (35%), Gaps = 11/292 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 K +++ + + VDI T+ + + I S + S S+ Sbjct: 56 KALTTMHDKMLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLD 115 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 I C+ + ++ +LLG+ +R L+ +E K+ + +L + S Sbjct: 116 GRIVIECNPTISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSD 175 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + +E D +S+ V + +TI+ + + P LL Sbjct: 176 ISSLNFRIE---SSDTNANAIQIVSDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLN 232 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + S+ K++ S + + ++ + + T +++ LK +I F Sbjct: 233 KIVDKIFSEGKNKKLSRK--EDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFN 290 Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKNFLHKR 318 + A + N KE +S G ++I ++ + Q++L R Sbjct: 291 KNASSSSATVYINKKEKFSAVSGISNNRKAVQIKANLDREKQETLDTLREMR 342 >gi|315635624|ref|ZP_07890887.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22] gi|315479921|gb|EFU70591.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22] Length = 368 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 104/292 (35%), Gaps = 11/292 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 K +++ + + VDI T+ + + I S + S S+ Sbjct: 56 KALTTMHDKMLREFINDLSSMLRKIVDIKLTTIEQMTYGEFILSIPQVTSLSTLSMKPLD 115 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 I C+ + ++ +LLG+ +R L+ +E K+ + +L + S Sbjct: 116 GKIVIECNPTISHKVIADLLGSGAVNTMDNLDRELTEIEIKVLEHFYKMFIKILYKTWSD 175 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIENVASSFVLIIPQE---TLLK 208 + +E D +S+ V + +TI+ + + P LL Sbjct: 176 ISSLNFRIE---SSDTNANAIQIVSDHDIVLLVVFEITIDEDSGFLSICYPISYIEPLLN 232 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + S+ K++ S + + ++ + + T +++ LK +I F Sbjct: 233 KIVDKIFSEGKNKKLSRK--EDIKTLISGARMKVEAIMAETELTTAEILNLKENDIIVFN 290 Query: 269 HRE-KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKNFLHKR 318 + A + N KE +S G ++I ++ + Q++L R Sbjct: 291 KNASSSSATIYVNKKEKFSAVSGISNNRKAVQIKANLDREKQETLDTLREMR 342 >gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia stuttgartiensis] Length = 318 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 106/274 (38%), Gaps = 12/274 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 K+ ++KIS ++ F + + V + + + + ++SF + S Sbjct: 53 KRQLQKISENMAVNMGL----TFSQYVRTTVGVELIAIEEFSYELFLNSFTDLVCASVVD 108 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 L+ + + + +++ LG + ++ R L+ +E+ + + ++ + + Sbjct: 109 LTPYRGKGCLTLDAGFCLAMIDRGLGGPGKIQQKI--RPLTIIEESVVSQVLSNVLHSMC 166 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 C + E + D+D + E + IN ++ E + V +P TL Sbjct: 167 LCWNDVAEIEWQIAK-TDMDLRSLQV-AHNTESMIAINFAISGELGTGTLVFCLPVATLE 224 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + ++ E+ I + Q+ + ++T + + + +++ L++G VI Sbjct: 225 ----AVMGKITEATLNREEEIVIIKQTLNQVPLLVNTILGTTQLSFNELINLRVGDVISL 280 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 ++ L + + G GK I+IT Sbjct: 281 DNKITDHLSLEIDEVPKFFGTPGVSGKKLAIKIT 314 >gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM 20603] Length = 308 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 107/310 (34%), Gaps = 12/310 (3%) Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61 H+ P +T + +E + + L ++ + I Sbjct: 7 STARRHRKGPPERYDFRRPMTIAREHARIVEMACETFARQWATQL----TSRLRVMASIE 62 Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + I + + + S + +N + L+ LLG + Sbjct: 63 LDKLEMVTYDEYIATLDPHTTLVLFTADETRSTALLQIPSNTTMLWLDYLLGGPGLERQE 122 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL-EDFYDIDYLKKNTNRLSNEF 180 R L+ +E L + + A + S+ +P + Y+ +++ ++E Sbjct: 123 N-PRELTEIETALFRSLLDSSLADMRYAFSSITPMNPKIRGLQYNPQFVQA---VPASEA 178 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-KTYQLN 239 V N ++T+ + S+ ++ + LL + + S Q E+ F R + + Sbjct: 179 VLVANYSLTVGDRVSAATMMFAADALLNPLKVGEGEADPSAAQREEQRVSFERLRLSMND 238 Query: 240 VNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V +D + T++ D++ + +G VI H + G+ I G GK Sbjct: 239 VPVDVGVRFNSITVRPRDIIDMAVGDVIELRHAASKPLRIVVEGRTIGHGVPGNNGKQLA 298 Query: 298 IRITDRINFD 307 +++TD Sbjct: 299 VKVTDTHRES 308 >gi|91792689|ref|YP_562340.1| flagellar motor switch protein FliM [Shewanella denitrificans OS217] gi|91714691|gb|ABE54617.1| flagellar motor switch protein FliM [Shewanella denitrificans OS217] Length = 190 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 37/116 (31%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + L M ++S Q KF +H+ + S I Sbjct: 56 ERFARHLRISMFNMMRRAAEVSINGVQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITM 115 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 LV L++N G ++ R + E+++ + + I + + + Sbjct: 116 EARLVFILVDNFFGGDGRFHAKIEGREFTPTERRIVQLLLKIIFEDYKEAWAPVMD 171 >gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC BAA-613] gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC BAA-613] Length = 296 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 97/282 (34%), Gaps = 18/282 (6%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 T+E + S +L + + +I+ ++ S +++ +F ++S Sbjct: 20 TVENLYDSFARALAPYLTGLLQSF----CEININGIVEKRYQEFSSSVQDHSLFGMITMS 75 Query: 90 SW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + + L ++E LLG +R + +EK + + + +I+ Sbjct: 76 PANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEY--DLSRDFTDIEKAILQYVLKKITE 133 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L + + +L +L + + V + + + IE + + +++P Sbjct: 134 FLGEAWGQYLDIEASLTGLQTNPHLLQM--SAQEDVVIQVELEVVIEKLRARINMVMPAP 191 Query: 205 TLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTL 259 + + T+ S + Q ED Q V + ++ +D++ L Sbjct: 192 NVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQL 251 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 G VIP + + L + G+ + I+ Sbjct: 252 APGDVIPLNKKVDSAVSLYVEDVACFEARAGQTKMRKAVEIS 293 >gi|114777574|ref|ZP_01452555.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans PV-1] gi|114552045|gb|EAU54562.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans PV-1] Length = 330 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 91/271 (33%), Gaps = 6/271 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 +L + + + E DV + +S +S + I+ S V+ + Sbjct: 61 NLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDIV-SVDAPQVYFVFEADGY-GRML 118 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 + L++ ++ +LG + ++LS VE +L++R +IS L Sbjct: 119 VSFDTALIVAFVDAMLGGDGD--ADDNPQTLSAVELRLSERIADKISKTLGDLWQPVYPL 176 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LS 215 +L T + F T ++ + + + + P+ L + ++ Sbjct: 177 DFSLHKLDYDPQFLAVTGAMEKCFSTFFDIKLN-DELNGQMGIYYPRSFLEPMLDVLRVT 235 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 ++S + + + ++ Q + + + + + + G +P R Sbjct: 236 VTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQIDIGAFLKMMPGDFLPISTRANDPC 295 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L + ++ G IT+ + Sbjct: 296 SLWIDEIPLFQATPGEKNGGLAAEITEPVQP 326 >gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis DSM 12885] gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis DSM 12885] Length = 322 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 98/284 (34%), Gaps = 12/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ I ++ L FL + +++DV + + I V + +L Sbjct: 33 RTLAMIHENVARLATGFLSGQLRTVVEVDVLEVEET----TYGEFITGLANPTVVAVFNL 88 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S+ + ++ +++ L R L+ +E + + + + + + Sbjct: 89 PPLESSAVMDLEPSIAFPMVDRLF--GGPGTGAAAGRGLTEIETVVMRVILQGLLGAVAE 146 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + L + NE + M + ++ L +P LL+ Sbjct: 147 GWGQLVQVQGELVTVA--ANPLFVQVQPPNEIAVRVVMAVRFGQQEGAWRLCLPY-PLLE 203 Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L L+ + + + + + + + + T+++++ L+ GQV+ Sbjct: 204 PVLPRLAVHQYYARETKSHARSRERWEEGLRHVPLPVTVVLGRTRLTVRELLALEPGQVL 263 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 R + G+ + GR G +++ +R+ +++ Sbjct: 264 RLDTRAGGLVDVLVAGRPKFRGLPGRAGPRLAVQVVERVAEEEQ 307 >gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1] gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1] Length = 321 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 84/240 (35%), Gaps = 4/240 (1%) Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 +F +I + +++ F+ ++ +++ + G S + ++ + + Sbjct: 84 RFEDLITKLPVPSCINMFNITGLKGTHFLILDPRMIYSIVSVIFGGSAK-PYRIEGKEFT 142 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E K+ K+ + + + + ++ + L N F+ ++N+ Sbjct: 143 KLELKIIKKVVDLLLSAFQESWNSILSGEVMYLETEVNPALIAPMNSKKEMFIQA-HINI 201 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 I+ + L I +L + S+ D I+ L V++ I+ Sbjct: 202 EIDGIDYPIFLAIQNSSLEPVVDRLRNVSEVSDYVDYDSIN--KNLIKNLTVSLSVAIDG 259 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +KD++ ++G I ++ G LGR ++I ++ + Sbjct: 260 GDFMVKDILEWEVGDTITLKTSANRPVKVNIEGMLKMYGVLGRSNSKKAVKILKLLDNKE 319 >gi|226225727|ref|YP_002759833.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27] gi|226088918|dbj|BAH37363.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27] Length = 331 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 95/281 (33%), Gaps = 14/281 (4%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + ++ K ++ +++ S + F S ++ Sbjct: 48 RTLEAMYERLVKGFEAWLISRVRGQIEVRLQSVEQFSFGEFTLSLPMPCSSYIFDIAGTG 107 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 I +++ L G R+L+ +E+ + +I+ +L + Sbjct: 108 QKGVIDVGPEFSTYIVDRLFGGEGTGSALT--RALTPIERMAVRNVADKITGLLQEIWQD 165 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK---- 208 N+ F + + NR + V N+ + +V+S +L +P L K Sbjct: 166 HVAMDLNITGFESSPEILQVVNR--EDPVLVANVEVNTGSVSSLLLLCLPFSVLDKFFTS 223 Query: 209 ---TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L L++ + + + V + R+ + +++D+ + G VI Sbjct: 224 NGQQRLALLNTNEQEREATRQRSEAA---LRATKVPLTARLPDFQLSMRDLAQITEGSVI 280 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 P + ++ A +E + GRV N +RI D + Sbjct: 281 PTAIPKDARVLIRAGTQERFIGHAGRVNGNLAVRIVDALPS 321 >gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM 20745] gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM 20745] Length = 302 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 12/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 ++I+ I G FL K+ V +S + + + L Sbjct: 22 RSIQAIQEGFGRFAGNFLA----SKVRAAVHVSLVHVEQSTLGEFLDGLPFPTTLFISPL 77 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVLN 147 + NL +++ +LG ++ P S++ +E L + + A Sbjct: 78 DPLVGQAVMQIDMNLAFLVIDRMLGGPGDSTPAPRAGASVTEIEMLLLEELGQGLFAEFV 137 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + Q +S + L E I + +E + +P ++L Sbjct: 138 NAWA--QVTSLRAPHCEVALGAMQVQGLLPTEIALVIRHEVRMEGATGRLTICLP-ASML 194 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKT--YQLNVNIDTRINLKKTTLK--DVVTLKIGQ 263 + L L+++ N + + R V++ R+ L + T++ D++ +++G Sbjct: 195 EPILPRLNARLLFANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGD 254 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 VI + + + + + G++ +RI +R+ D Sbjct: 255 VIRLDTAADSALPVLVEDRVRFLGQPGQIAGQLAVRIVERVTDD 298 >gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens DSM 19672] gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens DSM 19672] Length = 342 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 102/284 (35%), Gaps = 12/284 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 ++I + + L + D++ S + + S + F+ S+ Sbjct: 55 RSIRNLHDKFARNFSSSLSNFLRTIT----DVNLVSVDQMTYGEFLMSLPDPTNFNIISM 110 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + + +LV +++ LLG +P R L+ +E+ + + I + L Sbjct: 111 IPLDGSAVLEINPSLVFPIVDKLLGGPG--LPMYKVRELTALEQHIMESVIYLLLKELED 168 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + + NE V + + +V+ L +P +L+ Sbjct: 169 TWKQVIP-NIKFRKEITENSPQVVQIVAQNEVVVLVVFEVKFADVSGMINLCLP-AVVLE 226 Query: 209 TTLISLSSQNKSENQSE----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L +SSQ+ + D +D + + + I T+ D++ L G Sbjct: 227 PILGKISSQDWLVGAKKVKGLDYLDRILDILMEAYLPLKLEIGPTILTVGDILELVEGDT 286 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 I F H+ + +L N + ++ E+G +G I + + + Sbjct: 287 IVFEHKAEEDVVLKVNNLDKFATEMGVIGVKKGALIKNILEESE 330 >gi|188997560|ref|YP_001931811.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp. YO3AOP1] gi|188932627|gb|ACD67257.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp. YO3AOP1] Length = 322 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 88/270 (32%), Gaps = 4/270 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K + + + + +S + +F I ++ ++ + + Sbjct: 53 EKWVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDSSLLII 112 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + +V L+ L G ++ R + +E ++ ++ + + + Sbjct: 113 DSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVYPIEIE 171 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + + + + + + M + IE + PQ L L + Sbjct: 172 RKSI-EFNPILVRIVSHAEKVIVAEIM-IDIEGLEVPLTFAFPQ-MLFLPIKDILFTDTF 228 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 S + +K ++N+ + ++ +K+ + +G I ++ L Sbjct: 229 GSEVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEELDLKV 288 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K + LG++ K + IT I + Sbjct: 289 EDKVKFKASLGKLDKKFAAMITKVIKENDD 318 >gi|260544318|ref|ZP_05820139.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038] gi|260757052|ref|ZP_05869400.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str. 870] gi|260759577|ref|ZP_05871925.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str. 292] gi|260762821|ref|ZP_05875153.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str. 86/8/59] gi|260882862|ref|ZP_05894476.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str. C68] gi|261215633|ref|ZP_05929914.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str. Tulya] gi|260097589|gb|EEW81463.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038] gi|260669895|gb|EEX56835.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str. 292] gi|260673242|gb|EEX60063.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str. 86/8/59] gi|260677160|gb|EEX63981.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str. 870] gi|260872390|gb|EEX79459.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str. C68] gi|260917240|gb|EEX84101.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str. Tulya] Length = 233 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 6/198 (3%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 L R G GD ++ ++ F + K+ D S +S + F Sbjct: 20 LLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSVESTDKTAFNDIF 76 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + W + ++ LV +++E + GA P + VE+K+A Sbjct: 77 DKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADHPFGMVEQKIANL 136 Query: 138 TIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ L++ +T+ D D + LS F T + +T Sbjct: 137 LAGHLAGALDRVFNTSSSQPLFAPGDCIDTADFDRENFELSRLF--TCRIAVTAAGKTGQ 194 Query: 197 FVLIIPQETLLKTTLISL 214 L++P+ T + + Sbjct: 195 MHLLLPRSTQKRCRMQLP 212 >gi|167770206|ref|ZP_02442259.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM 17241] gi|167667528|gb|EDS11658.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM 17241] Length = 329 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 94/272 (34%), Gaps = 18/272 (6%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K ++ + + L +L I + + DV + ++ ++ + + + Sbjct: 47 KAMDGLHETFSRLLSSYLSGILR--IGCDVQV--LQIDEERYYEYNNALPDTALIGIVGM 102 Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 I S + L++ LLG S + R + +E + +I Sbjct: 103 DPEGEDYSEGTMIIDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIV 160 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 L + E L+ + + + + +N+ + ++ + +P Sbjct: 161 GKLEDSWKNSIEVKMTLDSIET-NSRLLQIFAPEDTVIIVV-INIKAGKLNATMSICMPA 218 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVT 258 + + + +KS +++ + ++ ++ I + K LKD++ Sbjct: 219 DNMEEIIDKFSMKYSKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQ 278 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 L+ +IP + ++ +G ++ +LG Sbjct: 279 LQPSDIIPLNKKITDDIQVTLDGLPWFTAKLG 310 >gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium 1_7_47_FAA] gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium 1_7_47FAA] Length = 296 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 99/285 (34%), Gaps = 18/285 (6%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 T+E + S +L + + +IS ++ +S ++ +F +LS Sbjct: 20 TVENLYDSFARALAPYLTGLLQSY----CEISINGIVEKRYQEFSNSVPDHSLFGMITLS 75 Query: 90 SW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + + L ++E LLG R + +EK + + + +I+ Sbjct: 76 PANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDIEKAILQYVLGKITE 133 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L + + +L +L + + V + + + I+ +++ +++P Sbjct: 134 FLGEAWGQYLDVQASLTGLQTNPHLLQM--SAQEDVVIQVELEVVIDKLSARLNMVMPAP 191 Query: 205 TLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQ----LNVNIDTRINLKKTTLKDVVTL 259 + + T+ S + Q E+ Q V + ++ +D++ L Sbjct: 192 NVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQL 251 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 G VIP + + + + + G + I++ + Sbjct: 252 TPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISNEL 296 >gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5] Length = 98 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 51/98 (52%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 M + + P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV + Sbjct: 1 MTMSDASHDKPAMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTV 60 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98 +Y C+ G +H+I N A+L +WS N + Sbjct: 61 NYLGCEIGYKNHLIDDLSANVTLVDATLRNWSQNVTLA 98 >gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM 5159] gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM 5159] Length = 334 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 90/275 (32%), Gaps = 5/275 (1%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + +F ++ V + + V A L Sbjct: 40 QSIHEAFDRFASNYLSAQVRSAVHCELGPIEQTTLGDYLDRLPSQVVLCIAELEPLVGRI 99 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + L++ +LG + E P +++ +E L + + L Sbjct: 100 VLEIDFATASRLVDRMLGGAGEERPPFTATTITEIELLLLRELGNGLFGELAAAWEQVIR 159 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LKTTLI 212 P + + ++ + +E V + + + +F +++P TL L Sbjct: 160 LQP--QPCEVVLSGQQIQGMMPSEIVLLVQHQVRLFESEGTFTVVLPASTLEPVLPRLNA 217 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + N S +I + ++++ + + + T+++++ L+ G V+ Sbjct: 218 RVLFANPRRATSPQVIADLMAQLEEVSLQLRVELGRARLTVRELLALEPGDVLVLDQDVS 277 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + + + G+ G++ IRI + D Sbjct: 278 FPLAVYVENEPCFYAFPGQRGRSLAIRIAGTLTED 312 >gi|325527237|gb|EGD04619.1| flagellar motor switch protein FliM [Burkholderia sp. TJI49] Length = 220 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 45/163 (27%), Gaps = 2/163 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 + + L M +IS + + K+S + + + Sbjct: 60 RFARLLRIGIFNFMRRTAEISVSQVKVLKYSEFTRTLPIPTNLNLVHVKPLRGTSLFVFD 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 NLV +++NL G ++ R + E+++ R + + + + Sbjct: 120 PNLVFFVVDNLFGGDGRFHTRVEGRDFTATEQRIIGRLLNLVFEHYTTAWKSVRPLQFEF 179 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 NE V ++ + +P Sbjct: 180 VRSEMHTQFANV--ATPNEIVIVTQFSIEFGPTGGKLHICMPY 220 >gi|163784305|ref|ZP_02179215.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880423|gb|EDP74017.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1] Length = 263 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 82/243 (33%), Gaps = 4/243 (1%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 +S +F+ + ++ S+ N + + LV T++ L G Sbjct: 17 VSQNDIYITRFNDFMLKIPLPASYTIISMKPLKENSLLVLDSRLVFTIISVLFGG-PPKP 75 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179 ++ R + +E K+ I + ++ L + + +E Sbjct: 76 FKVEGREFTKLEIKVINDFIKAVLETFESVWEQIYPIKIEMKSIELNPNLARIVS--PSE 133 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239 V + +++ I+ + PQ L S + E + K +++ Sbjct: 134 KVIVVELSIDIDGYEAPMFFCFPQNMFLPIKDFIYSEVTQFEE-DVAWKNYLLEKVHKIK 192 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + +KD++ K G + T + K + +LG+ + + ++ Sbjct: 193 VKLWVELFKETYKVKDILEWKEGTKLETKISTDTLLKVYIEDKPKFLGKLGKKKEKFAVK 252 Query: 300 ITD 302 I D Sbjct: 253 IKD 255 >gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM 43160] gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM 43160] Length = 321 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 99/285 (34%), Gaps = 16/285 (5%) Query: 2 RGQSIHKNTSPLH-PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 R + T P L+R + ++ + L + + L Sbjct: 17 RSRRGEPRTYDFRRPTKLSR-----EHVRVLQIAQEAFARQTTTVLTTMLRAGARL---- 67 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + S + + ++ + + ++ + ++++LG S Sbjct: 68 ELLGIEQHSYDDYVASLPDPCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGSADQ 127 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 +R ++ +E + + ++ + L S E P L + L + + ++ Sbjct: 128 --PDRPMTVMETAITNHLLGRLLSELAGSFSHIIELQPELSEIEYNPQLAQAAS--GSDT 183 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQL 238 V + + I + + L++P + + S Q Q++ + + Q+ Sbjct: 184 VMVASYTIGIGSRSGEATLVLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQV 243 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 V++ R + + +D+++L +G V+ H + ++ N Sbjct: 244 PVDVGVRFAPLEVSSEDLLSLAVGDVLLLRHPQDAPLEVTTNEVT 288 >gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506] gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506] Length = 321 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 110/320 (34%), Gaps = 28/320 (8%) Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67 K+ S L P L RL +E+ + L + V +++ + Sbjct: 18 KSASELEPSKLHRL------AAIVEETAEELTLALNRLSID--------KVAVTFRDFEM 63 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 G+ + I ++ +F+ + + ++ L + GA + R+L Sbjct: 64 GQGADGIGDAGDDVLFATLTSKRFGRPAYLAAPETLADVCISAYFGAKPAE--RAGKRAL 121 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 + +++ L K T + E+ F + + L + + ++ Sbjct: 122 TDLDRALVKTTFKTFVETFASAFAPIDEAGLAAGGFVECEELDELLGGPNAGRYVSMTFG 181 Query: 188 MT-IENVA--------SSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 ++ + + S+ L +P +L + L + + E + R Sbjct: 182 LSKAGDRSATAEEEPLSTLTLALPSSYLSLHRRVLSEPLPLPQP-SPDETWSEAMVRNFE 240 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + ++++ + K+ L +V ++GQ + L GK I+ ++G +Y Sbjct: 241 KSGLHLEAVLARKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSY 300 Query: 297 TIRITDRINFDQKSLKNFLH 316 R + ++ Q+ + L Sbjct: 301 VARFEEAVDPTQEFINGILS 320 >gi|152990356|ref|YP_001356078.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2] gi|151422217|dbj|BAF69721.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2] Length = 326 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 88/269 (32%), Gaps = 5/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + K + ++ + +S S +F++ + + ++ ++ + Sbjct: 59 ERWVKLFREEVRKVLPKINMVSKESIYITRFNNFMFNIPMPSSYTTFTMRPLKETALLVI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + LV T++ + G ++ R + +E + K I L + S Sbjct: 119 DSRLVFTVISVMFGG-PAKPFKVEGREFTKLETYVIKDFIDIALESLQEVFSAVYPVDVE 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L + T+ NE V + I+ + P L I S Sbjct: 178 KRSIELNPALARITS--GNEKVIISECIVDIDGFEAPIYFCFPHGMFLPIKEIIYS--EF 233 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 Q NV + + + ++DV+ K G + ++ A L Sbjct: 234 QGEIDPVWKRRVNEILLQTNVEVALELPKQTYLMRDVLQWKEGMELILDIEKEEDAYLRI 293 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + K + C++G++ + Y + + ++ Sbjct: 294 SDKYKFRCKVGKIKEKYAALLKNEHQEEE 322 >gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] Length = 323 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 9/268 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +F + L IS + F S + + + N I Sbjct: 59 ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++ G +P + E+++ + +++ L + Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDLMALTFT 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218 + + + + V + + + N +SF ++ P +T LK L S+ Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ +D + R + + + R+ + L+ ++ ++ G V+P E Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--AVS 292 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 323 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 9/268 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +F + L IS + F S + + + N I Sbjct: 59 ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++ G +P + E+++ + +++ L + Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDLMALTFT 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218 + + + + V + + + N +SF ++ P +T LK L S+ Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ +D + R + + + R+ + L+ ++ ++ G V+P E Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--AVS 292 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|254446496|ref|ZP_05059972.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae bacterium DG1235] gi|198260804|gb|EDY85112.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae bacterium DG1235] Length = 338 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 31/269 (11%), Positives = 95/269 (35%), Gaps = 5/269 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++L + L+ + + + +S + + I Sbjct: 71 EEFIRYLAARLSIFLRLEYSLKMSRLSTLTYSKFTETIPNPAHVVLFKIEQLFGVGVIDI 130 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L +T+++ +LG ++ R L+ +E L + + + + QE Sbjct: 131 NPRLALTMVDRMLGGKGHSVQ--GERYLTEIETNLVDDVVGIVLEEWCRQWKSEQELDTT 188 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + ++ + T+ ++ + ++M + + + + + +P TL ++ K Sbjct: 189 II-GHESNGRFLETS-PADAIMLVLSMEAGVGDCSETIQIGLPYYTLEPIIKRMHEAKEK 246 Query: 220 SENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + Q+++ + + + T K+V+ L+ G VI F + Sbjct: 247 DLGMDLTQAESSWQSSFNQIDIPVQAEWDGQTLTTKEVMNLRPGDVIRFPKTVLKDTRVR 306 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307 + ++ E+G +++ ++ + Sbjct: 307 LSNSIKFTGEVGLENDRVAVKLDKKLEEE 335 >gi|291562030|emb|CBL40846.1| Flagellar motor switch protein [butyrate-producing bacterium SS3/4] Length = 363 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 111/294 (37%), Gaps = 11/294 (3%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 KI S+ Y + L + DI+ Q ++ +++ EN + S Sbjct: 58 KILRSVFENYARILTSQINGIFRVMTDITVLDVQERRYYEYVNALHENDCMTMIDASIAG 117 Query: 93 SN-----FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 + + +VITL+ ++LG + R S VE+ L KR + ++ L Sbjct: 118 EEKMSVPLMLFVTPGMVITLINHMLGGEDVVAVEDDYR-YSDVERALYKRIVEYMTGALK 176 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIPQETL 206 S + ++E + + ++ +E V I +N+ I A + +P L Sbjct: 177 DGFSNYVSIAFSVEHVEENPTMVQDVGL--DETVAIIILNVDISGQAQEKVKICLPGNLL 234 Query: 207 LKTTLISLSSQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + ++ + S +D + + I ++ + LK + +++G VI Sbjct: 235 TVIFHSIDNRKHLARGFSYQDNKEKIMDNIRYSKLPITGQLGTVQLDLKGLYQIQVGDVI 294 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKNFLHKR 318 + + L + ++ ++G KN ++I I ++ + + ++ Sbjct: 295 DLGKPKDSPVRLFVGRQPWFTGQMGCYKKNVAVKIEKCIASQIEEKKTDIMPQK 348 >gi|296274406|ref|YP_003657037.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM 7299] gi|296098580|gb|ADG94530.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM 7299] Length = 364 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 103/297 (34%), Gaps = 23/297 (7%) Query: 37 SLGYLYKKFLPKIFK---EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93 + L+ K L + + VDI S + + I S + + S+ Sbjct: 56 AFSTLHDKMLRDLITDLSAMLRKIVDIKLYSIEQMTYGEFILSIPQLTSLNTLSIKPLDG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I C+ + ++ LLG+ +R L+ +E ++ I + L + Sbjct: 116 RIVIECNPGISHKIIAELLGSGSVASTDNLDRELTEIEVEIFDHFYKLIVSHLYKAWDEI 175 Query: 154 QESSPNLEDFYDIDYLKKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQE---TL 206 + I+ N N + +E V + + TI+ + + P TL Sbjct: 176 TTLNFK------IESRDTNANAIQIISDHEIVLLVVLEFTIDEESGFLSICYPISYIETL 229 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L + + ++ +++ S +NI+ + +++ LK G VI Sbjct: 230 LNKIVTKIFAEGRNKKASRK--KDITTLISGAKMNIEAIMAETFLKTSEILDLKEGDVIV 287 Query: 267 FLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ----KSLKNFLHKR 318 F + L N KE + G ++I I+ ++ ++L+ +R Sbjct: 288 FNKNSTSATSKLYINKKEKFLAISGLSNNRKAVQIKANIDHEKMETLETLRGMREER 344 >gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides] gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] Length = 323 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 91/268 (33%), Gaps = 9/268 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +F + L IS + F S + + + N I Sbjct: 59 ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++ G +P + E+++ + +++ L + Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDLMALTFT 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218 + + + + V + + + N +SF ++ P +T LK L S+ Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ +D + R + + + R+ + L+ ++ ++ G V+P E Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--ALS 292 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|213419486|ref|ZP_03352552.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 153 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 1/152 (0%) Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118 DI+ + + + + + L + S +LV ++NL G Sbjct: 1 DITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRF 60 Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 ++ R + E+++ R + + ++ N N Sbjct: 61 PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNITTSPN 119 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + V ++ I N+ F + +P + Sbjct: 120 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLR 151 >gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 323 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 9/267 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +F + L IS + F S + + + N I Sbjct: 59 ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++ G IP + E+++ + +++ L S Sbjct: 119 PPPFISLLTDSYYGGQIRHIPTTRT-EFTATEQRVIELVTDRLNVALQVAWRDLMALSFT 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218 + + + + V + + + N +SF ++ P +T LK L S+ Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ +D + R + + + R+ + L+ ++ ++ G V+P E Sbjct: 235 QSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLTE--AVS 292 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303 L + I+ G G + +T R Sbjct: 293 LLVENEPIFEGVPGERGGQAALNLTRR 319 >gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi DSM 13479] gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi DSM 13479] Length = 295 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 98/282 (34%), Gaps = 21/282 (7%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 T+E + S +L + + +IS T ++ +S + +F +L Sbjct: 20 TVENLYDSFARALAPYLTGLMQSY----CEISVTGIVERRYQEFSNSVPDRSLFGMITLI 75 Query: 90 S-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + + L ++E LLG + +R + +EK + + + +I+ Sbjct: 76 PDNKDYNEAPLVLEVDTRLAFFMIERLLGGAGTEYEL--SRDFTDIEKAILQYLLGKITE 133 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 + + L +L + + V + + + I+ +++ L++P Sbjct: 134 FIGDSWKEYLDVDAALTGLQTNPHLLQV--SAPEDVVIQVELEVRIDQLSAVLNLVMPAP 191 Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVT 258 + + L S + +Q +D A++ + V + + +D++ Sbjct: 192 NVEE--LTSKFGYTYAVSQKKDEAKQLAKRGYIEQHLLESEVELRAIFHEFSLDAQDILQ 249 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 L+ G V+P + + + + LG + I Sbjct: 250 LQPGDVVPLNKKVDSSIDIYVEDIACFEARLGHTKLRKAVEI 291 >gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides] Length = 323 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 90/268 (33%), Gaps = 9/268 (3%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +F + L IS + F S + + + N I Sbjct: 59 ERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRGNQMIVI 118 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + L ++ G +P + E++ + +++ L + Sbjct: 119 PPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERCIELVTDRLNVALQVAWRDLMALTFT 177 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQN 218 + + + + V + + + N +SF ++ P +T LK L S+ Sbjct: 178 VVSREESMQFASFVD--GEDMVVNCSFMVQLPNTEPASFDILYPLQT-LKPISSQLRSRM 234 Query: 219 KSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 +S+ +D + R + + + R+ + L+ ++ ++ G V+P E Sbjct: 235 QSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLTE--ALS 292 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ I+ G G + +T R Sbjct: 293 LLVEGQPIFEAAPGERGGQAALNLTRRH 320 >gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268] Length = 395 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 103/285 (36%), Gaps = 9/285 (3%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA--SLS 89 ++ S+ Y + L DI+ + ++ +++F EN + + Sbjct: 65 IRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIVDTYVQ 124 Query: 90 SWSSN---FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + S L +TL+ ++LG S I + + VE L KR + I L Sbjct: 125 DKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIVHAL 184 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIPQET 205 S + + + + +E V MN+ I +A + +P Sbjct: 185 GDGFSNYISAEFKIAKIETNPSMVQEVGL--DETVVLAVMNVDISGLAMERIRICLPGTL 242 Query: 206 LLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L I + ++ + E+ D + + ++ + K ++D+ LK+G V Sbjct: 243 LEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLKVGDV 302 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 I + + L + ++ ++G KN IRI DRI Sbjct: 303 IDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRIIQKDD 347 >gi|289806356|ref|ZP_06536985.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 154 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 1/150 (0%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 + DI+ + + + + + L + S +LV ++NL G Sbjct: 6 LRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFG 65 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R + E+++ R + + ++ N Sbjct: 66 GDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVR-SEMQVKFTNI 124 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 N+ V ++ I N+ F + +P Sbjct: 125 TTSPNDIVVNTPFHVEIGNLTGEFNICLPF 154 >gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter versatilis Ellin345] gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter versatilis Ellin345] Length = 329 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 96/283 (33%), Gaps = 11/283 (3%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 +++ + IS SL + + L + + + + S + + ++ E +S Sbjct: 47 NREQVRSIS-SLHEGFARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTF 105 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + + +L +++ LLG Q+ R ++ +E+++ + + L Sbjct: 106 RIGTADNIGAMEMDLSLAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKEL 163 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL---IIPQ 203 E L++ E + + + + S L + Sbjct: 164 ETAWQPL-GMEFAFEARQQAAQLQRL--MPPTEKILALCFELEMPGCRGSLNLAFSAVVS 220 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 LL+ + +S D RK + + +++++ L+ G Sbjct: 221 NALLRKLSKDWGYRRQSRESDGD--GKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGD 278 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++P ++ LS G+ + R G +I RI+ Sbjct: 279 ILPLKRSAESAIELSVGGRASFRARPVRSGNWRAAQILGRIST 321 >gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM 15053] gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM 15053] Length = 336 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 110/287 (38%), Gaps = 15/287 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K ++ I + G L L + + ++ S + ++ + EN V +L Sbjct: 52 KLLKGIYDNYGRLASSRLNGVLRTA----CEMEVLSVEEQRYFEFSNILSENDVMMMLNL 107 Query: 89 ----SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 S + I S L++ +++ +LG + + + + S +E L K+ + + Sbjct: 108 KLPDESKNPPMMIHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLD 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 + + + + + L + + +E V + +N+ ++N+ + IP Sbjct: 168 ITRDAWGNYIKINLGDQRLEENPGLFQEISL--DEPVAIVLLNVKMQNIDGRITICIP-G 224 Query: 205 TLLKTTLISLSSQNKSENQSED----LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 LL + + + ++ + + + + I + + ++K+V LK Sbjct: 225 NLLMNIFNIIDKRKHVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLK 284 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +G VI ++ +L + + +LG KN ++I I + Sbjct: 285 VGDVIDLNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE 331 >gi|182412236|ref|YP_001817302.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1] gi|177839450|gb|ACB73702.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1] Length = 351 Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 84/278 (30%), Gaps = 9/278 (3%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 + + + + L + ++ L + ++ S Sbjct: 65 ELRRLRLLHEDFIRYLAARLSLYLRMELGL----KMAKLTTATYAKFTDSLPSPTHLCLF 120 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + + L +T+ + LLG R L+ +E L + + + Sbjct: 121 KVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEIEIALLEDVVNIVLEEW 178 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 T QE P + + + + V + + + + + +P T+ Sbjct: 179 CTQWKTEQELRPQIIGHENNGRFLQT--SPKDAIVLILTLEANFGDCSEQIQIGVPYYTI 236 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + K S + Y+ + V + + +L++VV+L++G V Sbjct: 237 EPVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAMDISLREVVSLRVGDVF 296 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + N + +G +++T + Sbjct: 297 ELPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRK 334 >gi|322432979|ref|YP_004210228.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9] gi|321165206|gb|ADW70910.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9] Length = 321 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 96/286 (33%), Gaps = 12/286 (4%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T+ + +L L + +++ + + S Sbjct: 35 ARTLTTVHETLARN----LTNSLDVYLGTGLEVRLIHLEQFSMEDFKATCMSAAYMLPCS 90 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 S+ + ++L+ T+++ LLG S + R L+ +++++ + + I+ + Sbjct: 91 AKPSSNTLLLEMDSSLMFTVIDLLLGGSGKNPES--ARELTEIDEEIMEGVGSLIAQQIE 148 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 + L + + E V I+ +++ V + + Q ++ Sbjct: 149 RAWQPVG---FVLTPGKCVKPNLAHRVFPPTEKVLRIHFEVSVAGVTGALYIAF-QASMA 204 Query: 208 KTTL--ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + I S K+ + ++ + I K ++D+ +++G V+ Sbjct: 205 SHLVRNIRADSTGKTGGVVYMPLPKLQKRILDCQFALSGDIPNLKVPVRDLARIEVGSVL 264 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 L+ GK Y R G N +++ + I+ + Sbjct: 265 MLSAPVSMPGKLTLEGKTYYEALPVRQGNNKAMQLMNAIHSKHTDV 310 >gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium cellulosolvens 6] Length = 368 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 11/271 (4%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSS 90 K+ S+ Y + L DI+ + ++ ++SF EN + + Sbjct: 56 KLLRSIFENYARILTSQVNGIFRTMTDITVMELRESRYYEYVNSFHENDCMTIIDTVMPE 115 Query: 91 WSSN---FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 I + L++TL+ ++LG + I N S VE L KR + I L Sbjct: 116 KGKFSVPMMIYVTPGLILTLMSHMLGGGEQVISTEENYRYSDVEMSLYKRILEYIIHALG 175 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIPQETL 206 S + + + + +E V +++N+ + +AS + IP TL Sbjct: 176 DGFSNYLTVDFRPQKVEENPSMIQEVGL--DETVVLVHLNVDVTGIASEKIRICIP-GTL 232 Query: 207 LKTTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L+ ++ ++ + + + + ++ + T++D+ L++G V Sbjct: 233 LEQIFRTIDNRKHIARGFTYSNNSEVIMSHLKETKFPLTAQLGTVRLTMEDLYRLQVGDV 292 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKN 295 I + L + + +G KN Sbjct: 293 IDMNKSKDATLSLFVGKQPWFKGTMGVHHKN 323 >gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614] gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614] Length = 335 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 90/265 (33%), Gaps = 19/265 (7%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + +F + +S S + ++ I S + + S Sbjct: 70 FCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDSLDASTYLTSFSAEPLFDRGVFEIPL 129 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 V+T ++++LG R L+ +E +A I ++ L +++ P ++ Sbjct: 130 LAVMTCVDHMLGGPGRLEQ--PERPLTEIEAGVASGMIERLLGELRYSMASIVAFEPVVK 187 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-------TTLISL 214 + +++ + ++ + I + + +P +LL +S Sbjct: 188 GVEYSPQFVQVAG--ASDVMVAASLELRINDRTFRMTMCMPFSSLLPHLLRAAAPAPVSE 245 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREK 272 + + + +L D F R V ++ ++L+ TTL ++ L+ G + H Sbjct: 246 RERAQRAQAAAELADQFQR------VPVEVAVSLRPTTLSPMELAALRPGDALRLRHPAA 299 Query: 273 TCAILSANGKEIYSCELGRVGKNYT 297 + +G G G Sbjct: 300 APLEVVVDGTCFAHATPGTSGFRLA 324 >gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans SRS30216] gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans SRS30216] Length = 314 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 83/259 (32%), Gaps = 8/259 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + + + + V + Q + S V + + Sbjct: 49 FCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASLPMPTVMAVFDPEPLVGAAVLHMDM 108 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 V++ +E +LG + R L+ +E LA+ + + L + T + P L Sbjct: 109 AFVLSCIERMLGGTGHNAQ--PERQLTDIEAVLARGMVERTLVELASSLVTVTDLKPKLT 166 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + + + + ++ ++ VA + L +P + L T L + + S Sbjct: 167 AID--QNPAFAQAAAATDVMIVSSFHLEVDGVAGTATLAMPLDP-LSTALTAAELRVASP 223 Query: 222 NQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + D + V + R+ + +++ L G V+ HR + Sbjct: 224 EELRIRRLMRDRLDDHLEHIPVEVSVRMKAAQMRPDEILGLVPGDVLRLPHRADEPLEVV 283 Query: 279 ANGKEIYSCELGRVGKNYT 297 ++ + S G G Sbjct: 284 SSDAHVASAVAGSRGAKLA 302 >gi|90415345|ref|ZP_01223279.1| flagellar motor switch protein FliM [marine gamma proteobacterium HTCC2207] gi|90332668|gb|EAS47838.1| flagellar motor switch protein FliM [marine gamma proteobacterium HTCC2207] Length = 330 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 73/252 (28%), Gaps = 9/252 (3%) Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + KF + + L+ ++V L+N G Sbjct: 81 VGMGDVKIMKFGEYLRDLSAPLSVNTIRLNPLRGYSMAVIEPSIVFAALDNFFGGFGRGF 140 Query: 120 PQ-LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 + R + E + K + + L + + + N E + N Sbjct: 141 DKLPPGRLFTPTETSIIKIMLDVLFGSLKEAWAPI--LAINCEHVNSEINPQFAQIADEN 198 Query: 179 EFVTTINMNMTIE-NVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARK 234 + V + N++ + L+ P +L + + + + ++ Sbjct: 199 DLVVVSRFGADLGRNISGNIDLVYPYNSLKPIRDLLRSRVQTGDGDDISDKEWSAELQSA 258 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + +TTL + G ++ F E + N ++ ++G G Sbjct: 259 AVDAELEVTVELGEIETTLSKFEAMSEGDIVYFSKSEHARVYV--NSVPVFDADVGANGS 316 Query: 295 NYTIRITDRINF 306 RI + Sbjct: 317 QMAARIIKPLAP 328 >gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus 11B] gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus 11B] Length = 314 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 27/265 (10%), Positives = 80/265 (30%), Gaps = 5/265 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + + + + + + + S + SL + Sbjct: 46 ETFCRQFTTVLTSTLGVFSLVELVAVEQMSYVDYVESLPTPTFLALISLDPLQGTGILQL 105 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + ++ +LG R + VE ++ K + L + SP+ Sbjct: 106 PLETAMLCVDRVLGGPGSAQQPT--RLPTDVETEIMKMVTRRAVQELRYAFEGLVQVSPD 163 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + + ++ V ++ + + + + L+IP L + S + Sbjct: 164 VIGIETNPQFAQA--AVPSDIVVVASLEIKVGDQDGAATLMIPFTGLYPVLEAAASPKRG 221 Query: 220 SENQSEDLID-PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + + + + T +++ L +G V+ H +++ Sbjct: 222 DRRDLLERSQAALRARLEDVEIEVAVQFPYVALTPHELLNLSVGDVLSLRHPTNAPLLIT 281 Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303 A G G G+ + + Sbjct: 282 AEGIPFAYAVPGSNGRQAACLVVEP 306 >gi|262273545|ref|ZP_06051359.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] gi|262222523|gb|EEY73834.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886] Length = 296 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 94/278 (33%), Gaps = 14/278 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 TI+ + L K+ I + V+ +Y + + + E ++ + ++ Sbjct: 33 ATIDNVCKQFETLAKQAFQHILR----CPVEFTYQQQHTETLQDHLKAMGEQSLYREFTV 88 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S N + L L++ G + ++S E ++ R Q+ Sbjct: 89 SPHHFNGVLVIEKELQFLLVDLFFGGKGIVKART---TISDTEWRMMARFFGQMLDQYAI 145 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + L+ ++D R ++ M + + +P L Sbjct: 146 AWQSVSPWQCQLQPKENLDL---ENTRQDSQLHQICRFTMNVCGHQGWIDISLPLNGL-- 200 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 L + + + +L + + + + + ++ +L D++ LK+G VIP Sbjct: 201 DFLRHRHATDDDAATAPELQHIVNATLKKAPIRLLSTLCERQLSLGDIMALKVGDVIPVE 260 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ++ A +++ ++ +++ + I Sbjct: 261 LPGE--VVVRAGRTPLFTAKVAEQNATLVLQVQNVIEQ 296 >gi|54307255|ref|YP_128275.1| hypothetical protein PBPRA0018 [Photobacterium profundum SS9] gi|46911675|emb|CAG18473.1| Hypothetical protein PBPRA0018 [Photobacterium profundum SS9] Length = 296 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 34/258 (13%), Positives = 86/258 (33%), Gaps = 9/258 (3%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 F + V+ S+ + K + K+ ++ + ++S + + L+ ++ Sbjct: 48 SFHHLLRHPVEFSFDQQDTLKLQDYLQQLKKPCLYREFTVSPHDLHGTVSIDGELLFFMV 107 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 + G + I + + +S E +L +R + L Q + + + Sbjct: 108 DLFFGGNGNNIRRNND--MSDTELRLVERFF---NLALEQFAHGWHSITSWHNHLTEKNT 162 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228 L+ +N+ + + F + +P L + + +L Sbjct: 163 LRLGNPMQNNQLYQVCRFTIDVCGHKGWFEIALPFAGLDFLRDQQCKAAD--IETDPELQ 220 Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 K Q + + T + + L V+ LK G +IP + + A +++ Sbjct: 221 AKIQTKICQTPMRLTTTLCERSLALGKVMDLKTGDIIPVELP--SEVTVRAGKTSLFTAR 278 Query: 289 LGRVGKNYTIRITDRINF 306 + + ++I I Sbjct: 279 IAEHNASLVLQIQSIIKQ 296 >gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP] Length = 165 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---- 230 S+E V I ++ V L P ++++ L++Q+ + + +++ + Sbjct: 25 VPSSEMVLAITFFVSFGKVEGYMSLCWP-SSVIEPIGEKLTTQSWFKVKQKEITEEHIEK 83 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + +++ I TL +++TL++G VI + NG+ + + G Sbjct: 84 LKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVIRLKEHYDEPIRVEVNGRTKFLGKPG 143 Query: 291 RVGKNYTIRITDRINFDQK 309 + NY ++IT+ I ++ Sbjct: 144 QYKGNYAVKITEVIEEPKE 162 >gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542] gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542] Length = 315 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 18/312 (5%) Query: 2 RGQSIHKNTSPLH-PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 R + P+ LAR G + E + + L ++ + V + Sbjct: 17 RQRPAQPEAYDFRRPMTLAREHG-----RAFEMAFETFARQWGTQL----TSRLRVMVGV 67 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + + + + S+ + S + ++ + ++ +LG + Sbjct: 68 GLDGVEMVSYDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGG-PGLVR 126 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF-YDIDYLKKNTNRLSNE 179 + R L+ +E L ++ A L ++ Y+ +++ ++E Sbjct: 127 EELPRELTEIETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQYNPQFVQA---APASE 183 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI---DPFARKTY 236 V +T+ ++ L+IP + LL +S+++ + D R Sbjct: 184 AVIVATFTLTVAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMS 243 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V++ R+ +DVV L +G+VI H + +G + G G+ Sbjct: 244 TVPVDVHVRMRPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQL 303 Query: 297 TIRITDRINFDQ 308 +I D D+ Sbjct: 304 ACKIVDSEGEDR 315 >gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827] Length = 320 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 9/301 (2%) Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71 P P + T + + + ++ + + + + + S + ++ Sbjct: 24 PGDPEVFD-FTRPVKLPRELLRVLQLCYETFSHRMATLLTSTLRVVCHAELISIEQLSYA 82 Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131 + + + L + + + +T +++LLG P R LS +E Sbjct: 83 EHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGGKGGPQP---ARPLSDIE 139 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 L + + Q L + + + P LE + + V + + Sbjct: 140 TPLLRDLLDQALEQLRVGMESVADVRPELEGLEY--NPQLVQTSTPTDAVVVGYFELNVG 197 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSEN---QSEDLIDPFARKTYQLNVNIDTRINL 248 L IP +T+L + S + E + + V + + Sbjct: 198 EEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAITAGLQNVPVAVSVKFQS 257 Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + D+V L+ G VIP HR + A G+ + + G + + ++ Sbjct: 258 VRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVATKRGTRLACLVVAGADSEE 317 Query: 309 K 309 Sbjct: 318 N 318 >gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484] gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484] Length = 309 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 73/264 (27%), Gaps = 6/264 (2%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + ++ + +++ + + ++ + Sbjct: 41 QRVARQFATQLTARLRVVSQVTFEDLELRTYDEYTGGLPTPTAMVMCAMEPSRQTAVLQI 100 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 + ++ L G + R L+ +E L + + L + S Sbjct: 101 PVGATLVWIDYLFGGDGRGDER-EGRELTDLEWTLVRDLLQHAIGDLEYSFAGVTPMSAT 159 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + + E V + + ++P + LL S + + Sbjct: 160 VRSVQYNPQFAQVV--AAQETVLVAVFLLRVGEREDRMTFMLPSDLLLGALRSSEGADAR 217 Query: 220 SEN---QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 SE + R + V++ + +DVV L +G V+P H Sbjct: 218 SEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDVVNLTVGDVLPLSHPSSEPLD 277 Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300 + +G + G G ++ Sbjct: 278 VVVDGIVLARAAAGSHGSRLACQV 301 >gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 31/271 (11%), Positives = 88/271 (32%), Gaps = 10/271 (3%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T+ + ++ L FL + +++ V + + I V + +L Sbjct: 33 RTLAMVHENVARLATGFLSGQLRTVVEVAVLEVEET----TYGEFITGLSNPTVLAVFNL 88 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S+ + ++ +++ L R L+ +E + + + + + + Sbjct: 89 PPLESSAVMDVEPSIAFPMVDRLF--GGPGTGAATGRGLTEIETVVMRAILQGLLGSVAE 146 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + L + NE V + +++ ++ + +P L Sbjct: 147 GWSQLVQVQGELVTVA--ANPLFVQVQAPNEIVVRVVLSVRFGQQEGAWRICLPYPLLEP 204 Query: 209 TTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 Q + + + Q+ + + + + T++ ++ L G V+P Sbjct: 205 LLPRLAVHQYYARETRSQARSREQWEEGLRQVPLPVQVVLGRAQLTVRQLLDLAPGHVLP 264 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYT 297 R + + G+ + G+ G+ Sbjct: 265 LDTRAGSLVDILVGGRLKFRGLPGQHGQRLA 295 >gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter woesei DSM 14684] gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter woesei DSM 14684] Length = 322 Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 91/263 (34%), Gaps = 4/263 (1%) Query: 41 LYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCS 100 ++ + ++ + +++ + +S + + ++ + + Sbjct: 60 MFCQTAAARLTAELRVPLELEVINTTQLTWSAAQQQLPPASLGTPLEVAPHDTRMLMTAE 119 Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 V+ +E LLG + E P+ R LS ++ L+KR ++ L+ + Sbjct: 120 LPFVLMAIEYLLGGAPERPPR--QRKLSEIDWVLSKRLFETLTTQLSIVWQDLAGQTLAA 177 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ ++ +E TI + I +S+ L+IP ++ ++ Sbjct: 178 QEVDSH--VEGMQVAAISEPTLTITLESRINRHSSTLALLIPWVSIDPVADQIAGRDLRT 235 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 +V + + + + DV+ L G ++ ++ A Sbjct: 236 RADDPRAAALVQAALSGAHVTMRAEVGSVEMAIDDVLGLAPGDLVKLSSLAADGVVVYAE 295 Query: 281 GKEIYSCELGRVGKNYTIRITDR 303 I+ + GR G ++I DR Sbjct: 296 DVPIHHAQPGRSGARRAVQIVDR 318 >gi|56551539|ref|YP_162378.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761177|ref|ZP_04759266.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752861|ref|YP_003225754.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543113|gb|AAV89267.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374796|gb|EER64257.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552224|gb|ACV75170.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 332 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 19/295 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 + R+ G +E+I+ L + + + + ++ F Sbjct: 55 IVRMAG-------LERIAEKLARRLRLIIEPFARART----QVTVDGVDIHHFEKWRRDL 103 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 E S L+ I + L++ G + P + + E++L R Sbjct: 104 PEFVSISLYRLAPLKGGAMIVMDPQFITGLVDAFYGGTGIVTPSRA-KEFTPAEERLLVR 162 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASS 196 I+ + + S + ++E V + N A+ Sbjct: 163 LSDTIADSVVESWSDVVQLQSQFLSRETNGAYVTMI--RNDEAVVVQRFTIVPGNGRAAR 220 Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 ++ P+ TL + + + + E+ + + I T + + T+ Sbjct: 221 ISIVYPRATLRPFEMHLDTKVHDDAGPADENWTKRMRLAASAIPIPIKTILARPQITMGQ 280 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + LK+G+VIP E+ I A K+I +G + I +++ + + Sbjct: 281 LKNLKVGEVIPIEMPEQLPLI--AGTKKIAYGSIGDRDGKTALLI-EKLEEEPEI 332 >gi|225872620|ref|YP_002754077.1| putative flagellar motor switch protein FliM [Acidobacterium capsulatum ATCC 51196] gi|225793214|gb|ACO33304.1| putative flagellar motor switch protein FliM [Acidobacterium capsulatum ATCC 51196] Length = 316 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 6/266 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 SSL L+ + L + + I S + F + + + L + Sbjct: 52 SSLNDLFARNLGINLGAWLGMQCRIQLVSAEQIPFEEFVMRGADLSFIASLRLEPLRAVA 111 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + V ++++ LLG + R L+++E+ + + I L+ + Sbjct: 112 ILQMELAPVPSMIDALLGGIGQPGEV---RELTSIEEAIVAHVVELICRELSSAWQSIGL 168 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 S + E ++ + + + + + +P Sbjct: 169 SFYFESRQMQTQMARL---LPIKERALCLSFEIRLPSASGLLHIALPAVVSNTVLRSLRG 225 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + + SE+ +++V ++ + ++++ L+ GQV+ F KT Sbjct: 226 DLHPQKEHSEETRAKMRGLVKKVSVGTALQLAPARIPMRELEGLEAGQVVVFPVTAKTRP 285 Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301 L G ++ R G+ I Sbjct: 286 ELLVAGVPLFQAVPVRSGERRAAHIE 311 >gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71] gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71] Length = 327 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 87/264 (32%), Gaps = 7/264 (2%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + L + + ++ + + + + S + S +LS + F Sbjct: 56 LVERHAEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAGPVFA 115 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 +L+ ++ G + +L+ E +LA+R + + Sbjct: 116 IAPADLLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDKLPLE 175 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 + + + ++E + I ++ + +S+ +++P L+ + Sbjct: 176 A--GEINTLGMPDRLEMLPASEMLLRIAFTLSAGDFSSALSVMLPFAA-LEPYRERFAPP 232 Query: 218 NKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 K ++ E F R+ + + + + + L D++ L+ G VIP Sbjct: 233 RKQDDVFEGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPL--APAEQV 290 Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299 L + + G ++ Sbjct: 291 SLKVDNVTLAEGRYGSFDGVKAVQ 314 >gi|149200770|ref|ZP_01877745.1| Flagellar switch protein FliM [Roseovarius sp. TM1035] gi|149145103|gb|EDM33129.1| Flagellar switch protein FliM [Roseovarius sp. TM1035] Length = 325 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 11/271 (4%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + +F + + IS + FSH + + A + + SN I Sbjct: 62 ERFCRLARPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSNQLIML 121 Query: 100 SNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 N V L G R + E ++ + I L Sbjct: 122 PPNFVSLLTNAYYGG--NIAYLPGGRAEFTASETRVIEIVTKGIYRALEAAWRDLIPLDF 179 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQ 217 + D L+ T S E V + + + ++ LI P + LK L S+ Sbjct: 180 A--NPVHEDNLQFATFVESEEKVVCCSFIIQLPEADPATLDLIYPLQA-LKPIAARLRSR 236 Query: 218 NKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +S+ ++D + +N+ R+ + + L+ G+V+P Sbjct: 237 MQSDQVADDLRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLT--LRP 294 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L G ++ E G + +T RI Sbjct: 295 QLLVEGTPLFDAEPGAQNGRAALSLTRRIEP 325 >gi|254437125|ref|ZP_05050619.1| flagellar motor switch protein FliM [Octadecabacter antarcticus 307] gi|198252571|gb|EDY76885.1| flagellar motor switch protein FliM [Octadecabacter antarcticus 307] Length = 326 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 103/287 (35%), Gaps = 11/287 (3%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84 LGD + I+ L + + + + I+ + F F + Sbjct: 47 LGDYYALRVINERFARLARTVFQPMLRVQPR----ITALPPEVKTFDEYCKEFPTLMCLT 102 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + ++ + + + TL G + ++ E ++ + +S Sbjct: 103 TSRINELRGSKMMVIQPEFISTLTNAYYGGVLGQKYKPST-EFTSTESRIIEIVTEGLSR 161 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L + + E + + + + + + EN A F ++ P + Sbjct: 162 NLLIAWQDLMPLTFSDESREENLQFASFVDGEETVIICSFTIELPQENKA-KFDILYPLQ 220 Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIG 262 T LK L S+ +SE +DL + V + + L K +L+ ++ ++ G Sbjct: 221 T-LKPIAAQLRSRMQSEVVDDDLTWRERLERAVTEVRLTVNVQLSKPRISLRQLIEVQKG 279 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V P + + +G+++++ ++G + I IT+++N +Q Sbjct: 280 DVYPIQL--RDGLSVLVHGQKMFAADIGEIAGFNAITITEKLNQNQT 324 >gi|254517014|ref|ZP_05129072.1| Surface presentation of antigens protein [gamma proteobacterium NOR5-3] gi|219674519|gb|EED30887.1| Surface presentation of antigens protein [gamma proteobacterium NOR5-3] Length = 327 Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 91/261 (34%), Gaps = 5/261 (1%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + L + ++ + + + + + S + + + +SLS + F Sbjct: 58 ERQAEMLGVALESGFSIEFTVLAQTPELLSVADAVASLERSVAVTNSSLSPLAGPVFAIA 117 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 L+ ++ G SL+ E +LA+R + ++Q + + + Sbjct: 118 PAELLSFVVNAYFGGGSAAPSDSSRSSLTPTELRLAERIAEFQLSSISQAWTD--KLALE 175 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 + + + S++ + I +++ +S L++P L L + K Sbjct: 176 AGELTTLGVPDRLEMLPSSDMLLRIAFSLSAGEFSSQISLMLPFAALEPYRERFLPPRKK 235 Query: 220 SENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 E +P F R+ + + + + + L D++ L+ G VIP + L+ Sbjct: 236 DEVSDGKSWEPFFRRELPGIELEVAGVLATQSIALADLLQLQAGMVIPI--KPPEEVRLN 293 Query: 279 ANGKEIYSCELGRVGKNYTIR 299 + + G ++ Sbjct: 294 IDNVTLAEGRYGSFDGVKAVQ 314 >gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1] gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1] Length = 331 Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 27/267 (10%), Positives = 83/267 (31%), Gaps = 9/267 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 + + L + + + ++ +F + ++ S + + Sbjct: 63 MNERIARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLFRVRPVKGMMMV 122 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + V +++ G + + E++L +R I VL + S T Sbjct: 123 AVEPSFVTNMVDAFYGGTGN-GLTTKGGEFTPSEQRLQRRLTDAIVEVLTRVWSDTFPLQ 181 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISLSS 216 + ++E V + + + ++ ++ P LL+ +++ Sbjct: 182 FDFSTHETNAAFANMV--RADEPVVVQSFTIKPGMSRSTRVEILYPLS-LLQPIEDQIAA 238 Query: 217 QNK--SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + ++ + + + + + + + ++ ++ LK G VIP + Sbjct: 239 RTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDVIPVNLSQ--T 296 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 L + +G + I Sbjct: 297 VPLLVGNRRFAEGTIGEQDGRAALMIE 323 >gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter chlorophenolicus A6] gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter chlorophenolicus A6] Length = 298 Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 76/248 (30%), Gaps = 9/248 (3%) Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109 K+ + + + S + S + + + Sbjct: 49 LTAKVRVKSSATLEQLSMQSYDEYAASLPSVTSMVLCRIDGSESRLVLQFPATAALAWIS 108 Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169 +LG S + + R + +E L +R + L + + ++P D + Sbjct: 109 RMLGGSGD--ADVPERKFTQIEHALVRRMVEDSLEDLKYSLGSLL-AAPLAMDVVQYNSQ 165 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229 + ++ + + S+ L IP + LL + D Sbjct: 166 FAQAAAPGELMIVA-TFSVQVGELPSAATLAIPADVLLPGL-----GAVNPTAPTADAGA 219 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + Q+ V++ ++ T ++ L +G V+P H E + ++ NG + + Sbjct: 220 LVRAQVAQVPVDVAVQLARTSVTPAQILGLAVGDVLPLPHPENSPFDVTVNGTRLATAAP 279 Query: 290 GRVGKNYT 297 R G Sbjct: 280 ARNGSRAA 287 >gi|320107039|ref|YP_004182629.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4] gi|319925560|gb|ADV82635.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4] Length = 326 Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 92/283 (32%), Gaps = 7/283 (2%) Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92 + ++ + + L + + + + FS + + E + L Sbjct: 31 RALHNMQDQFARNLTHTLGAWLRTSFIANLVATEQKLFSGFLATVPEAAYVASLRLEPLG 90 Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + NLV +++ LLG S R L+ +E+ + I+ N Sbjct: 91 VHGALLIDLNLVSPIVDLLLGGSGRAGEV---RDLTEIEEAILFSVSEMIAREFNVAWQA 147 Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 E L++ + E + + + + V IP +L Sbjct: 148 -SGIHFATEKREREGQLQRLMGYV--EKTLCMTYEVVMPEARGNLVFCIPAVSLSSILRK 204 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +S +++ +S + + Q ++ + + +++ +++GQV+ Sbjct: 205 MISQRDRPRRRSSESRLRVEDRIVQSRFSVALQFPQMRLGAHEIMEMQVGQVVRLPLPRN 264 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI-TDRINFDQKSLKNF 314 T A L + R G++ ++ T ++ + Sbjct: 265 TMAELRVGAVTAFRAHPVRAGEHRAAQVGTGQVPPANHITPHM 307 >gi|229058412|ref|ZP_04196796.1| Flagellar motor switch protein [Bacillus cereus AH603] gi|228719921|gb|EEL71511.1| Flagellar motor switch protein [Bacillus cereus AH603] Length = 328 Score = 88.9 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 98/283 (34%), Gaps = 14/283 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P ++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTPSDIISLLNVNMKTEFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTIGEIEKIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +IP + +GK ++C +G+ G + I Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|229017049|ref|ZP_04173968.1| Flagellar motor switch protein [Bacillus cereus AH1273] gi|229023230|ref|ZP_04179740.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|228738024|gb|EEL88510.1| Flagellar motor switch protein [Bacillus cereus AH1272] gi|228744222|gb|EEL94305.1| Flagellar motor switch protein [Bacillus cereus AH1273] Length = 328 Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 95/276 (34%), Gaps = 10/276 (3%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFSQASLSSW 91 ++ + K + F +M + +++ ++ + F S + +++ L Sbjct: 57 QAIASTFGKQTSQTFSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVIDLGLPEL 116 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 I VI + E LG R L+ E A + L Q Sbjct: 117 -GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCKNLQQSFE 174 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-- 209 + P +++ ++ +N+NM + ++ + IP ++ + Sbjct: 175 SVVAIKPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSVEEIMD 232 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L S + S ++ + K Q+ + I +K T+ ++ ++ G +IP Sbjct: 233 KLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDIIPLHT 292 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + +GK ++C +G+ G + I Sbjct: 293 KVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|225159021|ref|ZP_03725331.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2] gi|224802400|gb|EEG20662.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2] Length = 344 Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 82/237 (34%), Gaps = 7/237 (2%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 S + + L +T+++ +LG +R L+ +E Sbjct: 110 FTESLPAPSHICLFKADPLPGIGVLTINPRLALTIVDRMLGGRG--HSVTADRHLTEIEI 167 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 L + + + E P + + + + R + + + +++ + Sbjct: 168 ALLEDMLTLLLEEWCIQWKAGPELHPQIVGHENNGCFLQTSAR--DAVMLVLALDVNFGD 225 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN--LKK 250 + L +P +++T + L + +N D K ++ + R + + Sbjct: 226 CTGALNLAVPYY-MIETVVRDLQACRHQDNAPAARPDATGWKPVYEHIALPVRAEWPVFE 284 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +L+++ +L++G V+ + G E ++ +G G ++I ++ Sbjct: 285 ASLREIASLRVGDVLELPAGILDDTRVLLAGAEKFTGTVGVEGDRVAVKINRKLPTR 341 >gi|229011056|ref|ZP_04168250.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] gi|228750228|gb|EEM00060.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048] Length = 328 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 101/283 (35%), Gaps = 14/283 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG L R L+ E A + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFLMRRPLTAFEFLTLDNIFALLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLQQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +IP + +GK ++C +G+ G + I Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|300975540|ref|ZP_07173051.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1] gi|301050694|ref|ZP_07197555.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1] gi|300297617|gb|EFJ54002.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1] gi|300410309|gb|EFJ93847.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1] Length = 178 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 9/168 (5%) Query: 146 LNQCISTTQESSPNLEDFY------DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 L + ++ + ++ N N+ V ++ I N+ F + Sbjct: 2 LKLALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNI 61 Query: 200 IIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +P + L+ S N+ ++ D R+ + + L ++ Sbjct: 62 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQILK 121 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 LK G V+P I +G + + + G + Y +RI IN Sbjct: 122 LKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 167 >gi|229029443|ref|ZP_04185526.1| Flagellar motor switch protein [Bacillus cereus AH1271] gi|228731902|gb|EEL82801.1| Flagellar motor switch protein [Bacillus cereus AH1271] Length = 328 Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E A + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321 >gi|163939573|ref|YP_001644457.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis KBAB4] gi|229166618|ref|ZP_04294370.1| Flagellar motor switch protein [Bacillus cereus AH621] gi|163861770|gb|ABY42829.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis KBAB4] gi|228616872|gb|EEK73945.1| Flagellar motor switch protein [Bacillus cereus AH621] Length = 328 Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 99/283 (34%), Gaps = 14/283 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + + +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +IP + +GK ++C +G+ G + I Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 323 Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 101/285 (35%), Gaps = 10/285 (3%) Query: 24 KLGDKKTIEKISS--SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81 G+ T+ K S L + + L + I + + +I + + Sbjct: 40 GAGEALTLSKWSELDGLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARVGDLIPAMSDRI 99 Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141 + + + + L+ G S P+L + + E++L+++ Sbjct: 100 ALITTEIKPLEGESHLEFPGDFLSFLVNQYFGGSTVASPKLAGKV-TPSEQRLSEQLAKD 158 Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200 + L + S P D Y + + ++ + ++ + F L+ Sbjct: 159 VLRTLVEVWSDRLALEP--GDLYVDITTDRLSLLPADMGYVVLTYSVACGSDYQGEFRLL 216 Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 +P E++ L+ + + +++V + ++L +T+L++++ Sbjct: 217 LPYESMALQAPRLMPARREEPEVVVEPEWEARLQSAVPEIDVELCGVVSLLETSLRNLLA 276 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 K+G VIP + A L G+ I + G + ++ITD Sbjct: 277 FKVGTVIPIDEPQ--TAQLMVEGRGIARGKYGAHDSSRAVQITDF 319 >gi|229132591|ref|ZP_04261439.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] gi|228650823|gb|EEL06810.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196] Length = 328 Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 99/283 (34%), Gaps = 14/283 (4%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + + +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 +IP + +GK ++C +G+ G + I Sbjct: 286 DIIPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328 >gi|206974807|ref|ZP_03235722.1| putative flagellar motor switch protein FliM [Bacillus cereus H3081.97] gi|229195975|ref|ZP_04322728.1| Flagellar motor switch protein [Bacillus cereus m1293] gi|206746826|gb|EDZ58218.1| putative flagellar motor switch protein FliM [Bacillus cereus H3081.97] gi|228587534|gb|EEK45599.1| Flagellar motor switch protein [Bacillus cereus m1293] Length = 328 Score = 85.9 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +D+ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E A + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLMNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKAL 321 >gi|196039000|ref|ZP_03106307.1| putative flagellar motor switch protein FliM [Bacillus cereus NVH0597-99] gi|301053301|ref|YP_003791512.1| flagellar motor switch protein [Bacillus anthracis CI] gi|196030145|gb|EDX68745.1| putative flagellar motor switch protein FliM [Bacillus cereus NVH0597-99] gi|300375470|gb|ADK04374.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 328 Score = 85.9 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + I +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELIGYVDGKHKFNCFIGKDGTRKAL 321 >gi|118477197|ref|YP_894348.1| flagellar motor switch protein FliM [Bacillus thuringiensis str. Al Hakam] gi|225863621|ref|YP_002748999.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB102] gi|229121315|ref|ZP_04250546.1| Flagellar motor switch protein [Bacillus cereus 95/8201] gi|229183955|ref|ZP_04311170.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|118416422|gb|ABK84841.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|225786262|gb|ACO26479.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB102] gi|228599480|gb|EEK57085.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1] gi|228662160|gb|EEL17769.1| Flagellar motor switch protein [Bacillus cereus 95/8201] Length = 328 Score = 85.5 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|324325781|gb|ADY21041.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar finitimus YBT-020] Length = 328 Score = 85.5 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQSLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E A + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|196033337|ref|ZP_03100749.1| putative flagellar motor switch protein FliM [Bacillus cereus W] gi|195993771|gb|EDX57727.1| putative flagellar motor switch protein FliM [Bacillus cereus W] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFTLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229160725|ref|ZP_04288717.1| Flagellar motor switch protein [Bacillus cereus R309803] gi|228622740|gb|EEK79574.1| Flagellar motor switch protein [Bacillus cereus R309803] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 101/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQALS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L + VI + E LG + R L+ E A I Sbjct: 110 DLGLPEL-GEIVVEIDLAFVIYIHECWLGGDSKRT-FTMRRPLTAFEFLTLDNIFALICK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K QL + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKRYTSEVEVKVNQLYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDQLLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|294013062|ref|YP_003546522.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S] gi|292676392|dbj|BAI97910.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S] Length = 294 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 81/268 (30%), Gaps = 9/268 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 LG + L + + + ++ +F H + L+ + Sbjct: 26 LGEKLGRRLRALIEPIAGARPHVVAQDARALEFGAWAHEVPGSASIGVYRLAPLKGQVLL 85 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 ++ TL++ G + E +L R A L +C S Sbjct: 86 RLDAEMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISEAFIARLVECWSDMLALE 144 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS 216 L + E + ++I A L+ P + L+ + + Sbjct: 145 AGLIVRET--GIGFAAAAQPGEQMVLQRFLISISRDAEWPIDLLFPLSS-LRAVEPLMGN 201 Query: 217 QNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + +++ D + A++ ++ + T + +L +++ LK G +IP Sbjct: 202 RIPVDDERADPVWQARIAQRMREIRLPARTVLARPDLSLAELMQLKAGDIIPV--TINRS 259 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 L + + +G +I Sbjct: 260 LPLIVGDRIVAHGSIGEQDGRAAFQIEK 287 >gi|196045129|ref|ZP_03112362.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB108] gi|196024131|gb|EDX62805.1| putative flagellar motor switch protein FliM [Bacillus cereus 03BB108] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ D+ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGDIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|300117313|ref|ZP_07055103.1| flagellar motor switch protein FliM [Bacillus cereus SJ1] gi|298725148|gb|EFI65800.1| flagellar motor switch protein FliM [Bacillus cereus SJ1] Length = 328 Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +D+ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFSLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|42780856|ref|NP_978103.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987] gi|217959246|ref|YP_002337794.1| flagellar motor switch protein FliM [Bacillus cereus AH187] gi|222095386|ref|YP_002529446.1| flagellar motor switch protein flim [Bacillus cereus Q1] gi|229138463|ref|ZP_04267052.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] gi|42736776|gb|AAS40711.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987] gi|217068243|gb|ACJ82493.1| putative flagellar motor switch protein FliM [Bacillus cereus AH187] gi|221239444|gb|ACM12154.1| flagellar motor switch protein FliM [Bacillus cereus Q1] gi|228645000|gb|EEL01243.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26] Length = 328 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +D+ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E A + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321 >gi|49477321|ref|YP_035882.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218902877|ref|YP_002450711.1| putative flagellar motor switch protein FliM [Bacillus cereus AH820] gi|228914341|ref|ZP_04077956.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926799|ref|ZP_04089867.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933047|ref|ZP_04095910.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228984848|ref|ZP_04145018.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090726|ref|ZP_04221959.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|254723848|ref|ZP_05185634.1| flagellar motor switch protein FliM [Bacillus anthracis str. A1055] gi|49328877|gb|AAT59523.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538906|gb|ACK91304.1| putative flagellar motor switch protein FliM [Bacillus cereus AH820] gi|228692668|gb|EEL46394.1| Flagellar motor switch protein [Bacillus cereus Rock3-42] gi|228774798|gb|EEM23194.1| Flagellar motor switch protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228826648|gb|EEM72419.1| Flagellar motor switch protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832912|gb|EEM78481.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845335|gb|EEM90371.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 328 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229155334|ref|ZP_04283444.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] gi|228628049|gb|EEK84766.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium chlorophenolicum L-1] gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium chlorophenolicum L-1] Length = 299 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 80/268 (29%), Gaps = 9/268 (3%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 LG + L + + + ++ ++ +F ++ L+ + Sbjct: 26 LGEKLGRRLRALIEPIAGVRPHVAVHDARALEFGAWNAEVPDSSSIGVYRLAPLKGQVLL 85 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 ++ TL++ G + E +L R A L +C S Sbjct: 86 RLDATMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISDAFMARLVECWSDMLTLD 144 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS 216 L + E + ++I A L+ P L+ + + Sbjct: 145 AGLIVRET--GVGFAAAAQPGEQMVLQRFMLSISRDAEWPIDLLFPLSA-LRNVEGLMGA 201 Query: 217 QNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + +++ D I A + + + T + +L +++ LK G VIP Sbjct: 202 RIPIDDERADPIWQARIAARMRDIRLPARTVLARPDLSLAELMQLKAGDVIPV--TINRS 259 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 L + + +G +I Sbjct: 260 LPLIVGDRIVAHGTIGEQDGRAAFQIEK 287 >gi|68164513|gb|AAY87242.1| predicted flagellar motor switch protein [uncultured bacterium BAC17H8] Length = 321 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 100/283 (35%), Gaps = 13/283 (4%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84 LGD + I + + +F + + IS + F + + Sbjct: 48 LGDYHALRII----NERFARLARSVFLPMLRIQPRISSFPPEVKTFDEYTAGIENFMSLN 103 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 + + N + N + L + G +P + + E+++ + ++ Sbjct: 104 ISRIEELRGNMLSVMTPNFISVLTNSYYGGKITALPSKKS-EFTATEERIIELVTDGLNE 162 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203 L ++ + EFV + + + + A+SF +I P Sbjct: 163 TLQVAWRDLMPIKITYQNREINPQFASFVD--GAEFVIICSFVVQLPDTDAASFDIIYPL 220 Query: 204 ETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 +T LK L S+ +++ ++ + R + + + R+ ++ +++ +++ Sbjct: 221 QT-LKPIAAQLRSRLQADVAEDNHTWREKMERAVLNIPLPVTARLGQPVVSMYNLINMQV 279 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 G P E + + ++ + +LG VG N + + R+ Sbjct: 280 GDTFPITIGE--GVEVRIDTEDAFIGDLGDVGGNAAVNLKSRL 320 >gi|152975177|ref|YP_001374694.1| flagellar motor switch protein FliM [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023929|gb|ABS21699.1| flagellar motor switch protein FliM [Bacillus cytotoxicus NVH 391-98] Length = 328 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 99/275 (36%), Gaps = 14/275 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I++S G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIAASFGKQTSQSLA----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I +I + E LG + + R L+ E + + Sbjct: 110 DLGLPEL-GEIVIEMDLAFIIYIHECWLGGDSKRDFSIR-RPLTAFEFLTLDNVFSILCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+N+ E ++ + IP Sbjct: 168 NLEQSFESIVAIQPKFVTTET--DPNALKITTASDIISLLNVNLKTEYWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ L S + S ++ + K +Q+ I + +K T+ ++ ++ G Sbjct: 226 SVEDIMDKLTSENIVEHSSDKRKKYTSEVEAKVHQVYKPIHIALGEQKMTIGELEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 +IP + +GK ++C +G+ Sbjct: 286 DIIPLHTKVTDQLCGYVDGKHKFNCFIGKDKTRKA 320 >gi|47565432|ref|ZP_00236473.1| flagellar motor switch protein (fliM), putative [Bacillus cereus G9241] gi|47557422|gb|EAL15749.1| flagellar motor switch protein (fliM), putative [Bacillus cereus G9241] Length = 328 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 100/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +D+ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E A + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFALLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIKPTFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|213612309|ref|ZP_03370135.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 147 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 3/143 (2%) Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQ 223 ++ N N+ V ++ I N+ F + +P + L+ S ++ Sbjct: 3 EMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHE 62 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 ++ D R+ + + L ++ LK G V+P I +G Sbjct: 63 DQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVP 120 Query: 284 IYSCELGRVGKNYTIRITDRINF 306 + + + G V Y +R+ IN Sbjct: 121 VLTSQYGTVNGQYALRVEHLINP 143 >gi|52143697|ref|YP_083133.1| flagellar motor switch protein FliM [Bacillus cereus E33L] gi|228945366|ref|ZP_04107721.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977166|gb|AAU18716.1| flagellar motor switch protein M [Bacillus cereus E33L] gi|228814338|gb|EEM60604.1| Flagellar motor switch protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 328 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLRTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35243] gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris 28-1] gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35239] gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16] gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35243] gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris 28-1] gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC 35239] gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16] Length = 307 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 74/233 (31%), Gaps = 9/233 (3%) Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I + + + + +++LLG + I +R L+ Sbjct: 67 YDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGD-IESTPDRQLTE 125 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL-SNEFVTTINMNM 188 VE + + ++ L+ + L +++Y + + + + + Sbjct: 126 VEVSILSDFLKRVMMDLDMAFAGMLPLETKL---LNLEYAPQFVQAYDGSTPILFAPITL 182 Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSED---LIDPFARKTYQLNVNIDT 244 T +++P + + + +SE Q + + ++ V + Sbjct: 183 TTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVEVAV 242 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 R + +K +++ L +G +P +H L + + G G Sbjct: 243 RFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLA 295 >gi|84514809|ref|ZP_01002172.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53] gi|84510968|gb|EAQ07422.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53] Length = 320 Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 100/285 (35%), Gaps = 15/285 (5%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84 LGD + I+ L + + + + + + + F + + Sbjct: 47 LGDYYALRVINERFARLARTVFQPMLRVQPRITALMP----EVKTFDQYCENAPVLMSLT 102 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQIS 143 + + + + + L G + R + E ++ + ++ Sbjct: 103 TSRIDELRGSKMMVIQPGFISALTNAYYGGD--LGLRYQPRAEFTATETRVIEIITEGLN 160 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202 L + + + E + L+ + +E V + ++ + + ++ P Sbjct: 161 RTLLAAWQDLMQLTFSDESRE--ENLQFASFVEGSETVIICSFSVQLPKADDARIDILYP 218 Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLK 260 +T LK L S+ +SE +D+ + V + + L K +L+ ++++ Sbjct: 219 LQT-LKPIAAQLRSRMQSEVIDDDMTWRERLERAVSEVRLPINVQLSKPRVSLRQLISIT 277 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 G V P RE + G++++ ++G V I IT +++ Sbjct: 278 KGDVYPIQLRE--GLSVMVQGQKMFFADIGEVAGTSAITITQKLD 320 >gi|103488406|ref|YP_617967.1| surface presentation of antigens (SPOA) protein [Sphingopyxis alaskensis RB2256] gi|98978483|gb|ABF54634.1| surface presentation of antigens (SPOA) protein [Sphingopyxis alaskensis RB2256] Length = 312 Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 75/268 (27%), Gaps = 7/268 (2%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + + L + + V + + + F+ +F + Sbjct: 43 ESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEW-SGAAAPAIFWRYHAPPLKGPL 101 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I + L++ L++ G + + L+ E + A R I + Sbjct: 102 LIAAARPLLLQLVDIFYGGRGQLGGEREE--LTDAEDRFAARLGRDIGMQIAAAWRDKLV 159 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 P L D D K R +E + P L L Sbjct: 160 IEPEL-DCVTGDPAKLAAVRADDELFVQRFTLRGAPLDGRTIACAYPVAALRGIAGDELL 218 Query: 216 SQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + N + + + + + + + +L ++ L++G +IP Sbjct: 219 PDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMPRHVP 278 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 + G+ +G N I I Sbjct: 279 VTV--AGRSFAFGSIGEANGNAAILIDH 304 >gi|229096248|ref|ZP_04227221.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] gi|229115203|ref|ZP_04244613.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|228668343|gb|EEL23775.1| Flagellar motor switch protein [Bacillus cereus Rock1-3] gi|228687208|gb|EEL41113.1| Flagellar motor switch protein [Bacillus cereus Rock3-29] Length = 328 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ D+ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSDIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|229172409|ref|ZP_04299968.1| Flagellar motor switch protein [Bacillus cereus MM3] gi|228610880|gb|EEK68143.1| Flagellar motor switch protein [Bacillus cereus MM3] Length = 328 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLA----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWDTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I ++ T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQRMTMGEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|254461418|ref|ZP_05074834.1| flagellar motor switch protein FliM [Rhodobacterales bacterium HTCC2083] gi|206678007|gb|EDZ42494.1| flagellar motor switch protein FliM [Rhodobacteraceae bacterium HTCC2083] Length = 324 Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 11/269 (4%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 + + + +F+ + + IS F S + + + Sbjct: 56 RVINERFARLARSVFQPMLRVQPRISAQLPTVQTFDEYSKDSPSLMSLSTSRIDELRGSK 115 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRS-LSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + L G E + RS + E ++ + ++ VL Sbjct: 116 MMVMQPEFISALTNGYYGG--ELGLKHALRSEFTATETRVIEIITNGLNDVLLTAWQDLM 173 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLIS 213 S + + + + + + + S + ++ P +T LK Sbjct: 174 PLSFSEHAREENLQFASFVD--GGDTIIVCKFTVQLPKAESATLDILYPLQT-LKPIAAQ 230 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHRE 271 L S+ +S+ +DL + + V++ + L K +L+++V L+ G V P + Sbjct: 231 LRSRMQSDVIEDDLTWRERLEQAVMQVSLPMNVQLSKPKVSLRELVELEAGDVFPIQLK- 289 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRI 300 T + +G+E++ ++G V I I Sbjct: 290 -TGLGVMVHGQEMFVADIGEVAGTSAITI 317 >gi|75763360|ref|ZP_00743098.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896697|ref|YP_002445108.1| putative flagellar motor switch protein FliM [Bacillus cereus G9842] gi|228900345|ref|ZP_04064574.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|228907396|ref|ZP_04071254.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228938876|ref|ZP_04101476.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228964747|ref|ZP_04125854.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228971757|ref|ZP_04132378.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978366|ref|ZP_04138743.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|229043519|ref|ZP_04191228.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|74489151|gb|EAO52629.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542394|gb|ACK94788.1| putative flagellar motor switch protein FliM [Bacillus cereus G9842] gi|228725741|gb|EEL76989.1| Flagellar motor switch protein [Bacillus cereus AH676] gi|228781383|gb|EEM29584.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407] gi|228787847|gb|EEM35805.1| Flagellar motor switch protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794997|gb|EEM42496.1| Flagellar motor switch protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228820725|gb|EEM66750.1| Flagellar motor switch protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228852257|gb|EEM97053.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200] gi|228859232|gb|EEN03663.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222] gi|326939376|gb|AEA15272.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar chinensis CT-43] Length = 328 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 98/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRRKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|228920473|ref|ZP_04083818.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229069314|ref|ZP_04202604.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|229109219|ref|ZP_04238818.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|229178171|ref|ZP_04305542.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|228605301|gb|EEK62751.1| Flagellar motor switch protein [Bacillus cereus 172560W] gi|228674229|gb|EEL29474.1| Flagellar motor switch protein [Bacillus cereus Rock1-15] gi|228713801|gb|EEL65686.1| Flagellar motor switch protein [Bacillus cereus F65185] gi|228839103|gb|EEM84399.1| Flagellar motor switch protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 328 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|228952146|ref|ZP_04114238.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|46019719|emb|CAG25464.1| FliM protein [Bacillus thuringiensis serovar alesti] gi|228807500|gb|EEM54027.1| Flagellar motor switch protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 328 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 100/276 (36%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYMSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|30019808|ref|NP_831439.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 14579] gi|206970515|ref|ZP_03231467.1| putative flagellar motor switch protein FliM [Bacillus cereus AH1134] gi|218233573|ref|YP_002366448.1| flagellar motor switch protein FliM [Bacillus cereus B4264] gi|228958044|ref|ZP_04119779.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|229102362|ref|ZP_04233070.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|229127090|ref|ZP_04256087.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|229144376|ref|ZP_04272781.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|229149968|ref|ZP_04278194.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|29895353|gb|AAP08640.1| Flagellar motor switch protein fliM [Bacillus cereus ATCC 14579] gi|206734151|gb|EDZ51321.1| putative flagellar motor switch protein FliM [Bacillus cereus AH1134] gi|218161530|gb|ACK61522.1| putative flagellar motor switch protein FliM [Bacillus cereus B4264] gi|228633490|gb|EEK90093.1| Flagellar motor switch protein [Bacillus cereus m1550] gi|228639007|gb|EEK95432.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24] gi|228656206|gb|EEL12047.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4] gi|228681009|gb|EEL35178.1| Flagellar motor switch protein [Bacillus cereus Rock3-28] gi|228801561|gb|EEM48443.1| Flagellar motor switch protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 328 Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 325 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 13/274 (4%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 + + +F +F + + IS + F + + + + Sbjct: 58 RMINERFARFARSVFLPMLRVQPRISSFPPEVKSFDEYAAGIDSFMSLNISRIEELRGSM 117 Query: 96 FIGCSNNLVITLLENLLGA--SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 S + + L + G + + E+++ + ++ L Sbjct: 118 LTVLSPSFISVLTNSYYGGKIEGNKSRRPE---FTATEERVIQLINRGLNETLENSWRDL 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLI 212 E + + + + + V + + + ++ A+SF +I P +T LK Sbjct: 175 MEITLSHQSSEVNTQFASFVD--GADLVIICSFVVQLPDIDAASFDVIYPLQT-LKPIAA 231 Query: 213 SLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 L S+ +S+ +D D R + + + +++ ++ ++ LK G V P Sbjct: 232 QLRSRVQSDRIEDDQSWRDRMERAVLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPIQIG 291 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + + Y E+G VG I +T RI Sbjct: 292 --DGVEVLMDEHRFYYGEMGEVGGQSAINLTSRI 323 >gi|229078945|ref|ZP_04211497.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] gi|228704359|gb|EEL56793.1| Flagellar motor switch protein [Bacillus cereus Rock4-2] Length = 328 Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEIKVNQVYKPVHVAIGEQKMTMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|32490802|ref|NP_871056.1| hypothetical protein WGLp053 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166008|dbj|BAC24199.1| fliM [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 319 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 99/279 (35%), Gaps = 5/279 (1%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 K+I + +++ + ++ K + +DI+ + K+ I F + Sbjct: 37 KSIIEKLNNVNQKFTGYIKKEITNYIKEPIDITSKEIYTQKYCDFIKDFNTLVSINLIKT 96 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + ++ I + V +L+ G + + + S EK++ I + Sbjct: 97 NLFKNDLVIILTTEFVSIILDIFFGGTGNSFGRKNLNEFSISEKRIIDILNKLIINCYQK 156 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 + + + D + N NE + N +N+ +F +I ++ Sbjct: 157 SLKD--NINSINLELVTSDTCIQLINFDKNEKIFISKFNFHYKNLKINFFIIFSTFSVEN 214 Query: 209 TTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 L N E + + + + I + + D++ L G++IP Sbjct: 215 ENLFYEKKLSNNKEKEQNKWKNKLVNEIKSSKLLIQVKFADLSICVSDLINLNKGEIIPI 274 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + +K A + ++S G + +Y +R+ + IN Sbjct: 275 VKTKKLTAYVDC--IPVFSGSYGSLNGHYALRVENIINS 311 >gi|229189861|ref|ZP_04316871.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] gi|228593535|gb|EEK51344.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876] Length = 328 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 99/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM E ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTEFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K T+ ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGQQKMTMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|207109404|ref|ZP_03243566.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_CA4C1] Length = 193 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 2/132 (1%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S+ + L M V+I S + + S F+ S+ Sbjct: 56 RSIHDKMARNLSSQISSIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMGGTG 115 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++ +++ LLG NR S +E L + Q+ +L + S E Sbjct: 116 VLEINPSIAFPMIDRLLGGKGS--AYDQNREFSDIELNLLDTILRQVMQILKEVWSPVVE 173 Query: 156 SSPNLEDFYDID 167 P ++ Sbjct: 174 MFPTIDAKESSA 185 >gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 43063] gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 51333] gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 43063] gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC 51333] gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 306 Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 27/250 (10%), Positives = 73/250 (29%), Gaps = 8/250 (3%) Query: 52 EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111 ++ + + + I + + + + + +++L Sbjct: 49 GRLHVVITGEVGDLSMRSYDDYIKTLPNQTLMVIIDFQGGRNKGVLQFPRQTALAWVDHL 108 Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 LG + + +R L+ VE + + ++ A L+ + F I+Y + Sbjct: 109 LGGTGDVESTP-DRELTEVEVSVLIDFLKRVLADLDIAFQSMLPLD---SQFRTIEYAPQ 164 Query: 172 NTNRL-SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI-- 228 + + V + +T +++P + ++E Q + Sbjct: 165 FVQVVDGSTPVLFAPITLTAGEHLDDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAV 224 Query: 229 -DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + + + R + +++ L IG +P +H L + Sbjct: 225 RQHLVDTLEDVPIGVAVRFTPRNVNPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILAET 284 Query: 288 ELGRVGKNYT 297 G G Sbjct: 285 AAGTSGSRLA 294 >gi|332187923|ref|ZP_08389656.1| surface presentation of antigens family protein [Sphingomonas sp. S17] gi|332012084|gb|EGI54156.1| surface presentation of antigens family protein [Sphingomonas sp. S17] Length = 328 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 90/300 (30%), Gaps = 19/300 (6%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-- 82 GD T++ +S+ L + + +E++ + +F+ + Sbjct: 32 FGDLHTMQHLSARLARSLRGLFESLLREELRCWAEPLV----VQRFADYRAERGDGLSAW 87 Query: 83 --FSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + S+ + +++L++ G + P S + Sbjct: 88 LPMTMTSIGGPAIQADAKALCVVEGGFMLSLIDLFFGGAGR-APDTLPTEFSPAVDAMIA 146 Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 ++ + Q + + + + + + + ++ + Sbjct: 147 HLGDMMATPMRQAWESLARIEFHPGAPESSPAMLAKMD--GEDAMIVTRFGIAGQDRRPT 204 Query: 197 FVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + I+ LK +L+ + +K R + + + + +L Sbjct: 205 MLDILYPVAALKPHGSALTGKVVDKQAEADPTWRGDLTRAVMTVRFPVRSVLAEPVVSLS 264 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 ++ LK G VIP + ++ G + +G +++T + +NF Sbjct: 265 RLMELKTGDVIPISFGPEVPVMV--GGDLLGMGTVGTANGRAAVQLTSLARSAEGLAQNF 322 >gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-C] gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-C] Length = 334 Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 6/274 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 ++ L + L + IS KF+ + L + Sbjct: 55 AINEQVASMLGIGLAGRTRLALRISSAPATLLKFADLAPLLAPPASVCILGLGASYGFAL 114 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYN---RSLSTVEKKLAKRTIAQISAVLNQCISTT 153 L LL LG P+ R L++VE+ + +R + ++ + Q + Sbjct: 115 AVLEAGLAEALLAAALGDRRVRQPEEGGDTRRELTSVEQLVLRRLLRLLADAMTQAWAPV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 P + + + + + L+IP + Sbjct: 175 LPFEPEVLRLEPDPRMASI--APPTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKL 231 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 S + S+ E D AR+ Q+ V I + ++ L G+V+ E Sbjct: 232 SSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGR 291 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G+E G + + + + Sbjct: 292 PVPVVVQGREKLLGTPTVSGGSLALVVDQPLRPP 325 >gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58] gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58] Length = 295 Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 5/230 (2%) Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 S + + ++ TL++ G + + E +L R Sbjct: 70 TSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRLIARISE 128 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 + + + + +L + + +++ V + + L+ Sbjct: 129 TLMVRMVESWADVLPLDASLI-LRETGVGYAAAAQPADQMVLQRFVVTLTRDQEWPIDLL 187 Query: 201 IPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P L ++ + ++Q++ AR+ + + T + +L D++ L Sbjct: 188 FPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSLADLMEL 247 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 K+G VIP I+ + + +G +I + Sbjct: 248 KVGDVIPVTIGRALPLIV--GNRIVAHGTIGEQDGRAAFQIEKLAQETDQ 295 >gi|296502364|ref|YP_003664064.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171] gi|296323416|gb|ADH06344.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171] Length = 328 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 98/276 (35%), Gaps = 14/276 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFLLLCK 167 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 L Q + P +++ ++ +N+NM + ++ + IP Sbjct: 168 NLEQSFESVVAIEPKFVTTET--DPNALKITTASDIISLLNVNMKTDFWNTTVRIGIPFL 225 Query: 205 TLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 ++ + L S + S ++ + K Q+ + I +K + ++ ++ G Sbjct: 226 SVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMRMSEIEQIEEG 285 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +IP + + +GK ++C +G+ G + Sbjct: 286 DIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321 >gi|213615589|ref|ZP_03371415.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 190 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 41/149 (27%), Gaps = 6/149 (4%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 + P P R+ + I + + + + DI+ + + Sbjct: 34 DIRPYDPNTQRRVVRERLQALEI------INERFARQFRMGLFNLLRRSPDITVGAIRIQ 87 Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + + + L + S +LV ++NL G ++ R + Sbjct: 88 PYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKVEGREFT 147 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESS 157 E+++ R + + Sbjct: 148 HTEQRVINRMLKLALEGYSDAWKAINPLE 176 >gi|255026111|ref|ZP_05298097.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-003] Length = 300 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 26 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 85 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 86 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 144 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 145 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 202 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 203 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 262 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 263 TLKGYVTEKWKFECYMGKSGNQKAVK 288 >gi|114794453|pdb|2HP7|A Chain A, Structure Of Flim Provides Insight Into Assembly Of The Switch Complex In The Bacterial Flagella Motor Length = 183 Score = 78.2 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 11/185 (5%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88 +T + I + G +L + +DV+IS + I S + Sbjct: 10 RTFQMIHENFGRALSTYLSGRLR--TFVDVEIS---IDQLTYEEFIRSVMIPSFIVIFTG 64 Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 + + +L T+L+ ++G E P NR + +E + ++ + + +L Q Sbjct: 65 DVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLAQ 121 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S Q P++E+ + NE V + +++ S + P LL+ Sbjct: 122 AWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFS-LLE 178 Query: 209 TTLIS 213 L Sbjct: 179 PLLEK 183 >gi|46906950|ref|YP_013339.1| flagellar motor switch protein FliM [Listeria monocytogenes serotype 4b str. F2365] gi|217965203|ref|YP_002350881.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|226223330|ref|YP_002757437.1| flagellar switch protein FliM [Listeria monocytogenes Clip81459] gi|254824021|ref|ZP_05229022.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-194] gi|254853097|ref|ZP_05242445.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL R2-503] gi|254932021|ref|ZP_05265380.1| flagellar motor switch protein FliM [Listeria monocytogenes HPB2262] gi|254994391|ref|ZP_05276581.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-064] gi|290893996|ref|ZP_06556971.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-071] gi|300764511|ref|ZP_07074504.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N1-017] gi|46880216|gb|AAT03516.1| flagellar motor switch protein FliM [Listeria monocytogenes serotype 4b str. F2365] gi|217334473|gb|ACK40267.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|225875792|emb|CAS04495.1| Putative flagellar switch protein FliM [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606446|gb|EEW19054.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL R2-503] gi|290556442|gb|EFD89981.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J2-071] gi|293583573|gb|EFF95605.1| flagellar motor switch protein FliM [Listeria monocytogenes HPB2262] gi|293593249|gb|EFG01010.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-194] gi|300514865|gb|EFK41919.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N1-017] gi|307570238|emb|CAR83417.1| fliM [Listeria monocytogenes L99] gi|313610117|gb|EFR85440.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL F2-208] gi|332311124|gb|EGJ24219.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 330 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|16802741|ref|NP_464226.1| flagellar motor switch protein FliM [Listeria monocytogenes EGD-e] gi|47095265|ref|ZP_00232876.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 1/2a F6854] gi|224498781|ref|ZP_03667130.1| flagellar motor switch protein FliM [Listeria monocytogenes Finland 1988] gi|224501996|ref|ZP_03670303.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL R2-561] gi|254829356|ref|ZP_05234043.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N3-165] gi|254830310|ref|ZP_05234965.1| flagellar motor switch protein FliM [Listeria monocytogenes 10403S] gi|254900065|ref|ZP_05259989.1| flagellar motor switch protein FliM [Listeria monocytogenes J0161] gi|254911382|ref|ZP_05261394.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818] gi|254935709|ref|ZP_05267406.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900] gi|284801029|ref|YP_003412894.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5578] gi|284994171|ref|YP_003415939.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5923] gi|315281360|ref|ZP_07870000.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120] gi|16410088|emb|CAC98777.1| lmo0699 [Listeria monocytogenes EGD-e] gi|47016336|gb|EAL07258.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 1/2a F6854] gi|258601769|gb|EEW15094.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL N3-165] gi|258608292|gb|EEW20900.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900] gi|284056591|gb|ADB67532.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5578] gi|284059638|gb|ADB70577.1| flagellar motor switch protein FliM [Listeria monocytogenes 08-5923] gi|293589319|gb|EFF97653.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818] gi|313614999|gb|EFR88503.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120] Length = 330 Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|328475661|gb|EGF46410.1| flagellar motor switch protein FliM [Listeria monocytogenes 220] Length = 330 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKDMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|315301944|ref|ZP_07872945.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596] gi|313629686|gb|EFR97818.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596] Length = 330 Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 96/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L Sbjct: 56 TVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGDPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I VI + E L G + + R LS E+ K + + L + + Sbjct: 116 QIIIELDLAYVIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKESFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 P + L + T+ N+ + +N+++ E S+ + +P ++ + Sbjct: 175 HPIEPEIVSVETNPALIRVTS--PNDMMALVNVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|289433977|ref|YP_003463849.1| flagellar motor switch protein FliM [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170221|emb|CBH26761.1| flagellar motor switch protein FliM [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634376|gb|EFS00971.1| flagellar motor switch protein FliM [Listeria seeligeri FSL N1-067] gi|313639061|gb|EFS04048.1| flagellar motor switch protein FliM [Listeria seeligeri FSL S4-171] Length = 330 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 97/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L Sbjct: 56 TVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGDPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I VI + E L G + + R LS E+ K + + L + + Sbjct: 116 QIIIELDLAYVIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKESFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 +P + L + T+ N+ + +N+++ E S+ + +P ++ + Sbjct: 175 HPIAPEIVSVETNPALIRVTS--PNDMMALVNVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K] gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-1] gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K] gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans 2CP-1] Length = 338 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 79/274 (28%), Gaps = 6/274 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 ++ L + + I+ KF+ + L + Sbjct: 59 AINEQVASMLGIGLAGRTRQALRITSAPATLLKFADLAPLLAPPASVCILGLGASYGFAL 118 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYN---RSLSTVEKKLAKRTIAQISAVLNQCISTT 153 L LL LG P+ R L++VE+ + +R + ++ + Q + Sbjct: 119 AVLEAGLAEALLAAALGDRRVRQPEEGGDTRRELTSVEQLVLRRLLRLLAEAMTQAWAPV 178 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 P + + + + + + L+IP + Sbjct: 179 LPFEPEVLRLEPDPRMASIAS--PTDVGIVSGFELK-GGIEGRLHLVIPYAAVESAKQKL 235 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 S + S+ E D AR+ Q+ V I + ++ L G+V+ E Sbjct: 236 SSPRRLSQRADERFADALAREVEQVPVEIRGLYGRARIPFARLLELAEGEVLLLDTDEGR 295 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + G+E G + + + + Sbjct: 296 PVPVVVQGREKLLGTPTVSGGSLALVVDQPLRPP 329 >gi|47091661|ref|ZP_00229457.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b H7858] gi|47019980|gb|EAL10717.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b H7858] gi|328467265|gb|EGF38345.1| flagellar motor switch protein FliM [Listeria monocytogenes 1816] Length = 330 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELNKLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|16799782|ref|NP_470050.1| flagellar motor switch protein FliM [Listeria innocua Clip11262] gi|16413159|emb|CAC95939.1| lin0707 [Listeria innocua Clip11262] gi|313624714|gb|EFR94669.1| flagellar motor switch protein FliM [Listeria innocua FSL J1-023] Length = 330 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|313620068|gb|EFR91581.1| flagellar motor switch protein FliM [Listeria innocua FSL S4-378] Length = 330 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|116872088|ref|YP_848869.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740966|emb|CAK20086.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b str. SLCC5334] Length = 330 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/266 (14%), Positives = 98/266 (36%), Gaps = 6/266 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFISQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSNLEKFCEALRDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 SP + + L + T+ N+ + +++++ E S+ + +P ++ + Sbjct: 175 HPISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 + + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 233 ENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVLLTETHIRD 292 Query: 274 CAILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 293 TLKGYVTEKWKFECYMGKSGNQKAVK 318 >gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 467 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 102/301 (33%), Gaps = 21/301 (6%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77 ++R G L ++ + L ++F ++ L V+ S Q + + Sbjct: 60 VSRAQGLLAERLRWLTPADGTAVAVAARLTELFDAEVRLTVE----SVQVRPMAELRRFL 115 Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 + + + + + L ++ LLG + ET+ R L+ +E+ + Sbjct: 116 GDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGGAGETVGL---RPLTDIEEGVMAY 172 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + + +L + +D + + + +++ T+ + Sbjct: 173 VVLEGLKLLVPGLQAAVPRPRLDGVARGVDEVSARLGD--DGPMLAVHLQATLGPHSGMV 230 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 L++P L S+Q ++ +++ ++ FA + + + I + + +D+ Sbjct: 231 RLVVPAAVLDAAEPAVESTQRRARGKAD--LEAFASRLSAVRSWLRAEIGSAEISGQDLA 288 Query: 258 TLKIGQVIPFLH-------REKTCAILSANGKEIYSCE---LGRVGKNYTIRITDRINFD 307 +L++ V+ E A L E Y RITD + + Sbjct: 289 SLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWAEAEVFVGEDGRYQARITDFVQGE 348 Query: 308 Q 308 Sbjct: 349 P 349 Score = 39.2 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L + D D Q+ V + R+ T + VV L+ GQV+ Sbjct: 376 VPPELEGAALDDVSKPDGSDLLGDVPLQIAVEL-ARV---PVTAQQVVGLRTGQVLELNR 431 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300 LS NGK + EL + +RI Sbjct: 432 GPGEPVELSVNGKVVARGELVELEGQLGVRI 462 >gi|255521671|ref|ZP_05388908.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-175] Length = 213 Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 78/204 (38%), Gaps = 3/204 (1%) Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 I +I + E L G + + R LS E+ K + + L + Sbjct: 1 MIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSVHP 59 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215 SP + + L + T+ N+ + +++++ E S+ + +P ++ + + Sbjct: 60 ISPEIVNIETNPALLRVTS--PNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN 117 Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 + ++ + ++ +Q+ R+ KTT K++ L++G V+ + Sbjct: 118 VVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTL 177 Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299 K + C +G+ G ++ Sbjct: 178 KGYVTEKWKFECYMGKSGNQKAVK 201 >gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile] Length = 293 Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 53 KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112 ++ + + S + + + V Q ++ NF ++ ++ Sbjct: 41 ELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100 Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 G + + + +R L+ ++KK+ + + ++ E F +I L + Sbjct: 101 GGTG--VVKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147 Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222 T+ V +++ + +N S L P LL++ + N + Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYNGLEALLESISVIEFFDNDVGD 207 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 SE+ + +++ I ++D++ L++G VI + + Sbjct: 208 DSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267 Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307 + Y+ G + ++I D + + Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292 >gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] Length = 293 Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 23/265 (8%) Query: 53 KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112 ++ + ++ S + + + V Q ++ NF ++ ++ Sbjct: 41 ELKCNSNMVVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100 Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 G + + + +R L+ ++KK+ + + ++ E F +I L + Sbjct: 101 GGTG--VVKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147 Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222 T+ V +++ + +N S L P LL++ + N + Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYNGLEALLESISVIEFFDNDVGD 207 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 SE+ + +++ I ++D++ L++G VI + + Sbjct: 208 DSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267 Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307 + Y+ G + ++I D + + Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292 >gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246] Length = 283 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 17/281 (6%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90 IE+ ++ L + + + + + ++ ++ + F E + + Sbjct: 16 IERNVTAWLTLACRRTNEAAVQALRYPATLQIAKVETPSAAYCLAFFPEGAISVPLAPPD 75 Query: 91 W-SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 + N ++I LL L+G + E +R + +E L + + Sbjct: 76 APGGGALLVFPNPVLIALLSGLIGEAPE--ALPADREPTPMESALIPHLVREFF------ 127 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRL---SNEFVTTINMNMTIENVASSFVLIIPQETL 206 ++ +S P +E + NE + ++ L++ + Sbjct: 128 VTPFLKSWPGVEPLVVDIGAPAAPAAVWTGGNEHNIFVTFTLSAPYGEHPIYLLLTRSG- 186 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L++ S + ++V + + T++DV L G VI Sbjct: 187 ---RWEQLAAIGLSPPVTPAPKSEIESVVRAMSVEMSVILGRADLTMRDVSDLTTGDVIV 243 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 F + +G + G VG + + D I D Sbjct: 244 FDQKVTEPLDGLVSGARKFRVWPGVVGDRAAV-VVDTITGD 283 >gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 293 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 53 KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112 ++ + + S + + + V Q ++ NF ++ ++ Sbjct: 41 ELKCNSSMIVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100 Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 G + + + +R L+ ++KK+ + + ++ E F +I L + Sbjct: 101 GGTG--VIKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147 Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222 T+ V +++ + +N S L P LL++ + N + Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYNGLEALLESISVIEFFDNDVGD 207 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 SE+ + +++ I ++D++ L++G VI + + Sbjct: 208 DSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267 Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307 + Y+ G + ++I D + + Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292 >gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] Length = 293 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 53 KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112 ++ + + S + + + V Q ++ NF ++ ++ Sbjct: 41 ELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNAMEPVMKNFSFRIDRSVADMWIDITS 100 Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 G + + + +R L+ ++KK+ + + ++ E F +I L + Sbjct: 101 GGTG--VVKDNDRELTELDKKVLLHLMDDLVRNMH-----------LFEGFENIQVLDTH 147 Query: 173 TNR------LSNEFVTTINMNMTIENV-ASSFVLIIPQE---TLLKTTLISLSSQNKSEN 222 T+ V +++ + +N S L P LL++ + N + Sbjct: 148 THINLPQLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYNGLEALLESISVIEFFDNDIGD 207 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 SE+ + +++ I ++D++ L++G VI + + Sbjct: 208 DSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEVGDVIVTNKKINDYIDIFVENS 267 Query: 283 EIYSCELGRVGKNYTIRITDRINFD 307 + Y+ G + ++I D + + Sbjct: 268 KSYTATPGFISSKKGVKINDAVGKE 292 >gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum] Length = 155 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 60/146 (41%), Gaps = 7/146 (4%) Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS----ENQSEDLIDP 230 +E V + + + IP T ++ + LSSQ + + + Sbjct: 2 VPPSEMVVLVTLETKVGEEEGMMNFCIPYIT-IEPIISKLSSQFWFSSVRRSSTTQYMGV 60 Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCEL 289 K +++++ + + +++D++ L++G +I +LS ++ + C+ Sbjct: 61 LRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQP 120 Query: 290 GRVGKNYTIRITDRI-NFDQKSLKNF 314 G VGK +I +RI + Q+ + Sbjct: 121 GVVGKKIAAQILERIESTSQEDFEEL 146 >gi|299822275|ref|ZP_07054161.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601] gi|299815804|gb|EFI83042.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601] Length = 330 Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 10/268 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF-VFSQASL-SSWSS 93 +L + K + +++ L + F S + + + +F L Sbjct: 56 TLSSAFAKKTIEYVSQRIRLPIHTEAMLADQVSFASEYVDTMPNDSYLFCIIDLGDPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + +I + E L G + + R LS+ E+ K + L + + Sbjct: 116 QVIVEYDLAFLIYIHECLTGGNAKRKFS-ERRLLSSFEELALKSLVDLSCQALQESFKSI 174 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 P L L + T+ SN+ + IN+++ + S+ + +P ++ Sbjct: 175 HPIEPQLVAVETNPALLRVTS--SNDMMALINIDVKSDYWISTIRVGVPFFSVEYIMEKL 232 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHRE 271 + + ++S + + ++ +Q V D I + TL ++ L++G + Sbjct: 233 ENVVEYTFDKSRNFDEEVEQEIHQ--VEKDAIIKVGDIKMTLAELDELEVGDCLLTETHV 290 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIR 299 + K + +G+ G I+ Sbjct: 291 NQPLKGYLSNKWKFESYMGKSGTQKAIK 318 >gi|255589689|ref|XP_002535050.1| conserved hypothetical protein [Ricinus communis] gi|223524126|gb|EEF27332.1| conserved hypothetical protein [Ricinus communis] Length = 104 Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Query: 206 LLKTTLISLSSQNKSE--NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 +++ +L + +S+ + E + +V ++ I K L+D++ L+ G Sbjct: 1 MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VIP EK +L+ANG I LG+ N ++I ++ + Sbjct: 61 VIPVDLGEK--IVLTANGVPIMYARLGQSRGNLALQILEKFDR 101 >gi|10802799|gb|AAG23621.1|AF244672_1 flagellar motor switch protein [Carboxydothermus hydrogenoformans] Length = 153 Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 + ++ L G S + P++ R L+ +E + K+ ++ L Q + + P +E Sbjct: 2 FIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIEA 59 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222 + L + + NE V I I L +P E +L L LS+ Sbjct: 60 LENNPRLHQVLS--PNEIVAIITFTTEILGNNGLINLCLPFE-VLDPLLAKLSASYWFSL 116 Query: 223 QSEDLIDPF 231 + + Sbjct: 117 ATAADREAL 125 >gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 441 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 83/229 (36%), Gaps = 9/229 (3%) Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101 + L K D + ++ S Q F + + + + + + Sbjct: 60 AAEPLYARLKALFDAESRVNLVSVQIRPFQELQRYLGDPSFLAVLAPGALKERVVLEVEL 119 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 L L++ LLG ET+ R L+ +E+ + + + L + S P L Sbjct: 120 PLAHNLVDMLLGGVGETVGL---RPLTDIEEGVMSFVVLEALKALAPALDP---SLPKLR 173 Query: 162 DFYDIDYLKKNTNRLSNE-FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220 ++ +RL E V I++N ++ L+IP + L +++ +S Sbjct: 174 LETVARGAEEVADRLGEEDRVVVIHLNASLGPHTGLVRLVIPTGVVGAAELAQAAAERRS 233 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + ++ ++ + T + + I + +D+ +++ V+ Sbjct: 234 QVNTDLQLNRWMLSTVRT--WLRAEIGQAEIASQDLAYIRVKDVVLLDA 280 Score = 42.7 bits (99), Expect = 0.065, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREK 272 ++SE QS D ++ ++ + + L T +VV+L++G V+ Sbjct: 349 DGSSESEGQSLDTMNKSEGSDLLADIPLQIAVELARVPVTADEVVSLRVGHVLELHRSPG 408 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300 LS NGK + EL V +R+ Sbjct: 409 EPVELSVNGKVVARGELVEVEGQLGVRV 436 >gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium ferrooxidans DSM 10331] Length = 302 Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 84/259 (32%), Gaps = 5/259 (1%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 L + + + V + + ++ + +L S + Sbjct: 34 LVENALRPAATLMGASLRRGVRLELGRMDQLPWEQVVAQQDGPALVISFALVPLGSRGVL 93 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157 + + LL+ + R+L+ +E+ L + + + L + T + Sbjct: 94 RFGADAALRLLDLR---LGGDGSPIEPRALTELEQGLLVQVFSDLLVQLASSLQTLLDVR 150 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT-LISLSS 216 + + + V I + + + + S L +P L LI+ + Sbjct: 151 LDRVGAETSLEFVQVISPGEMCLVVPIALGIG-DELESELTLYLPYSMLRPVVELIAQRA 209 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + D A + + + + + R + + ++ L G V+P HR+ A Sbjct: 210 IVAVDRGGDTFRDLLAARLHDVRLEVSVRFEPTSISSRTLLELAPGDVVPLGHRQGQPAW 269 Query: 277 LSANGKEIYSCELGRVGKN 295 + + ++ +G+ G Sbjct: 270 VIVDRTRLHRAVMGQSGSR 288 >gi|119469992|ref|ZP_01612797.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] gi|119446702|gb|EAW27975.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7] Length = 133 Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 23/75 (30%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + M ++S Q KF +H+ + I Sbjct: 59 ERFARHMRISLFNMMRRTAEVSINGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITM 118 Query: 100 SNNLVITLLENLLGA 114 LV L++N LG Sbjct: 119 EARLVFILVDNFLGG 133 >gi|254454295|ref|ZP_05067732.1| Surface presentation of antigens protein [Octadecabacter antarcticus 238] gi|198268701|gb|EDY92971.1| Surface presentation of antigens protein [Octadecabacter antarcticus 238] Length = 330 Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 66/225 (29%), Gaps = 13/225 (5%) Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 V S L L+E S P R ++ V+ + + Sbjct: 73 VVLGLRDGSLAGLTGLFLLDQPLRSALVEMQTMGS-LLPPSDDQRRVTRVDAVMTLPFAS 131 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIENVASSFV 198 Q+ A L + + P D ID L+ N + I + M + Sbjct: 132 QVLAELAEVGFGAADLEPAAYDIGPIDDLRTAGLVMVQGNYRICRITIQMGGGETQGEML 191 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + + + + +++ K + + +D + + + Sbjct: 192 IAM------RPKVSVVTAPVKDTS---GWSVALRDAVQEAPAELDAILTRMTMPIHKLEG 242 Query: 259 LKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITD 302 ++GQV+ L+ G I + LG+V +R+ Sbjct: 243 FEVGQVLNLAGTTVGSVTLTGPGGIIITTARLGQVAGKRAVRVQH 287 >gi|146277515|ref|YP_001167674.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] gi|145555756|gb|ABP70369.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 100/296 (33%), Gaps = 18/296 (6%) Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72 + +L R + + L + ++ L +D++ + + Sbjct: 1 MTDGVLRRKIEAKARPVVAQAAGAERALRLS--LARAARDAFALALDVAGLASARRSLAE 58 Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 ++ +E +++ + S ++ L+E P +R + + Sbjct: 59 LLEMPEERSLYAIVEGPG-EGLGLVALSPPVLSALIEVQTIGRVSAQP-PASRKPTRTDA 116 Query: 133 KLAKRTIAQ--------ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 + I Q ++ ++ + + L+D + L ++ V T+ Sbjct: 117 AMVSGFIDQTLAELEVLLAEDEDRIWAGGFRYASFLDDPRPLGLLLEDCAYR----VLTV 172 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 N+++ + + S +L +P E + L + ++ D A + +D Sbjct: 173 NVDLALGAKSGSLLLALPAEGRGEPPLR-PEAPEETGTPGSDFGLALAEQVMGAECLLDA 231 Query: 245 RINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + L V+ ++G V+ + A ++ +G+++ LG+ IR Sbjct: 232 VLARVTLPLGTVMGWQVGDVVDLSKATLEDVAFVALDGRQVAEGRLGQHRGMRAIR 287 >gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter desulfuricans SSM1] Length = 292 Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 97/283 (34%), Gaps = 19/283 (6%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 L K+ + ++ DV+I T +G S + +F S + Sbjct: 15 EFVDLVKENFGSSLQTVINRDVEIEITEFFTGFISDVYENFDNPVCVKGVETESGNEFGL 74 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 + +L L++ ++ E+ +L + + K AK I QI + LN + + Sbjct: 75 LFTIKDLT-ALVDYMMMGEGESKDELDDET-----KDGAKELITQIVSSLNVPLKEKYDK 128 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII--PQETLLKTTLISL 214 N + + + + ++ + + S F+ I ++++T+ Sbjct: 129 KFNFTVVDIFTEMSEEDEKEYAAY----KFSIKADKIDSEFIFFIDSAFNSIIETSSEKT 184 Query: 215 SSQNKSENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 E + + + + +I K LKD++ L G++I Sbjct: 185 DDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIEL 244 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L N K I E+ V + +RI + ++ ++ Sbjct: 245 EEYADEPVELLVNNKVIARGEVVVVDGYFGLRIQEIVSKAERI 287 >gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771] Length = 47 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 30/47 (63%) Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++ Sbjct: 1 SGEVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47 >gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1] gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1] Length = 343 Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 71/278 (25%), Gaps = 16/278 (5%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 + I L + L + +++S + + V Sbjct: 35 AQAISTWCRDLAQELAQELAPLL---SGGRLNVSIAEPEQVGAQDVFDLIGPIAVNCLLR 91 Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147 I L + G + ++ A + Q +A + Sbjct: 92 CGEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPSQLP-----HSAAMLVEQFAATVA 146 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 Q I T S+ + + T + + N S Sbjct: 147 QAIVMTNGSAERA-RGDVLVRSESVTRLKPFGADAEVALFKLTINRGESANWCALFAVAS 205 Query: 208 KTTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 L +S L D + + ++ + TL + L+ G Sbjct: 206 DRVDGLLPGLEAVRIRSRSLEGSGDFERSGFAAMPLTLEAVVGEIDLTLGRLEQLRPGDK 265 Query: 265 IPFLHREKTCAILSANGKEIY-SCELGRVGKNYTIRIT 301 IP + G+ ++ ++GR+ N +R+T Sbjct: 266 IPLTISRDLPLRI---GETVFARGKVGRLDSNLALRVT 300 >gi|326386953|ref|ZP_08208566.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208562|gb|EGD59366.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM 19370] Length = 295 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 84/268 (31%), Gaps = 16/268 (5%) Query: 41 LYKKFLPKIFKEKM-----DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 + + + M +++ + + + +S S+ Sbjct: 36 RAADRMARTLRGAMARLCGGYPPEVAIAAPREIGIEEFQS--EGLTAYSIYSVLPGLDRL 93 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 V+ L++ G P+ R L A+ + +I +L++ + Sbjct: 94 ASAIDGEAVLRLVDRTFGG-PGEAPRPMPRELPMS----AELMVQRIETILSEELGRALG 148 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISL 214 S + L + S + + + ++ + L++P E L T + Sbjct: 149 GSHAIRPLRRDRDLAQLQPFASATRLALLEITISEGSREPWPIRLVLPVEALSSLTGMGA 208 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 S ++ DP A + + + + + L+ V TL +GQV+ Sbjct: 209 QPA-TSTTRAPAKGDPLAEPYGAMPLPVTALLVDTRVPLRTVSTLAVGQVLMLPIA--RS 265 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 L G+ + +G V I IT Sbjct: 266 VPLVVGGQTVGHGAIGAVDDRVAIEITH 293 >gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM 4359] Length = 344 Score = 62.4 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 104/307 (33%), Gaps = 34/307 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95 +G + + +V+I+ + K ++ F E V + Sbjct: 34 EIGNIAMGSAATTLSMILGRNVNITVPMVREEKMKNVKSDFNGEKVVVTVEYTEGLKGLN 93 Query: 96 FIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + +LV +++ ++G S E +L LS + + + + + + L++ + T Sbjct: 94 VLVLEKSLVAAIVDLMMGGSGEVESEELDEIKLSAIGEAMNQM-MGSAATSLSELLGITV 152 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNMTIENV-ASSFVLIIPQETLLKT- 209 SP + + D + ++ V + + IE + S F +I + + K Sbjct: 153 NISPPKVEILNFDDPSTKFPPVVDDPEKDVAVVEFEIEIEGLPKSKFYQVIGADLVKKMY 212 Query: 210 --------------------------TLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 + S S ++ + + + Sbjct: 213 EYFTRAHKEEAEEKKEEKKEEKKVKVEPVEFSELKPSGTAKTEIPQDKLELLLDVPLKVT 272 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + TLK V+ + G +I + NGK I E+ + +N+ +R+T+ Sbjct: 273 VELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRVTEI 332 Query: 304 INFDQKS 310 ++ ++ Sbjct: 333 VSPKERL 339 >gi|84515428|ref|ZP_01002790.1| possible flagellar switch protein FliM [Loktanella vestfoldensis SKA53] gi|84510711|gb|EAQ07166.1| possible flagellar switch protein FliM [Loktanella vestfoldensis SKA53] Length = 310 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 92/286 (32%), Gaps = 17/286 (5%) Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80 + G+ D + +++S L K + L + ++ T+ G+ ++ + Sbjct: 1 MAGQAVDTPPVSPLTTSRAVRLA--LVKAASDAGGLVLRVASTADDVGQLDDLLGGLETG 58 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 + + F+ L ++E P +R + +K L + Sbjct: 59 LMLVGLDRRGALA-GFVAVDMQLRAAMVEVQTTGRLLDQPAD-DRPATGADKALCDPLLV 116 Query: 141 QISAVLNQCISTTQES----SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 + L + T + L + V +N+ + + Sbjct: 117 AFLSALPPAVMGTAYEGWVDDVTVGGRLADSRLAGLLLEDGDYRVLRMNVELGTGDRQGE 176 Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 +L++P + + + + D F+ + R++ K L Sbjct: 177 VMLVLP--------VQAAPMVPEEQAPVMDWETAFSAAVQDAPAMLTARLHQFKMPLGRA 228 Query: 257 VTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301 L++GQV+P L A +G+ + +LG+ + +RI Sbjct: 229 QALQVGQVVPLPGCTVNSVRLIAPDGRCVAQAKLGQSAGHRAVRIE 274 >gi|86137304|ref|ZP_01055881.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193] gi|85825639|gb|EAQ45837.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193] Length = 450 Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 43/310 (13%), Positives = 98/310 (31%), Gaps = 33/310 (10%) Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHS 76 LAR + +K S +L ++ L + E+ DL + + + Q + ++ Sbjct: 17 LARKLAASKESGAAQKGSFTL-KALRRSLARAASEQCDLPLAV-LAARQVNRVPEDLVDD 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + LV L++ R+ + + + Sbjct: 75 LSDKDLLVVLDGPN-GRLGAATMDAALVTALIQKQTIGQ-IMGKAPAERNYTPTDAAMTA 132 Query: 137 ----RTIAQISAVLNQ-----CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 ++ A++ A+L S + + + I L+ RL ++ ++ Sbjct: 133 EFLEKSFAKVHALLQGEKDQLIFSGYRYGAQIEDVRSLILGLEGEDYRL-----ISLTVD 187 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + + + LI+P+ TL + L + A + + + Sbjct: 188 LAVGAMQGELKLILPEPTLEELGLSGAKAG-----------SSLAGGMGAMRAELSAILC 236 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIR--ITDRI 304 + L + K+G+V+P L G+ I LG++ +R I Sbjct: 237 KVRVPLNEFSAWKVGEVLPLDQAFLYETDLIDIGGRSISKGRLGQLNGARAVRLTIGRPQ 296 Query: 305 NFDQKSLKNF 314 + F Sbjct: 297 AASDQMGDGF 306 >gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG 20546] gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG 20546] Length = 272 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 91/241 (37%), Gaps = 36/241 (14%) Query: 74 IHSFKENFVFSQASLS---SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +HSF N + A+ + + F+ C +I L + GAS + ++LS Sbjct: 64 LHSFSNNEMEKNATSTFQHNAGGKVFVHCDKATLIKLADCFYGASIDR----AEQNLSNS 119 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 + +L R Q++ QE N E L+ + +++ + Sbjct: 120 DLRLQDRIGQQVTQ-----WLAPQEMWANGE------------FELAFGTGLYVKIDIQL 162 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 ++ S + L L++ ++ +E L D F + V ++ ++ K+ Sbjct: 163 DDHCGSLHIK------LDEQLVNTLTEQLDLQPNESLYDSFCQSLAATPVKLNVLLSQKR 216 Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 L D+++L+ ++P + +S + +++ + + IN D++ Sbjct: 217 MPLSDLLSLQANDILPIEL--LSTVPVSIGDQHLFNGSVAEKEGQLVL----IINHDKEP 270 Query: 311 L 311 L Sbjct: 271 L 271 >gi|260575623|ref|ZP_05843621.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] gi|259022266|gb|EEW25564.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp. SW2] Length = 325 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 25/254 (9%), Positives = 75/254 (29%), Gaps = 18/254 (7%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 +++ Q + ++ E + + + S +++ L+E + Sbjct: 41 LEVEKLDIQRRSLTELLDMPPERALIAVLEG-PAEGLGVLVISPSILAGLIEAQ--TVGQ 97 Query: 118 TIPQLY-NRSLSTVEKKLAKRTIAQISAVLNQ--------CISTTQESSPNLEDFYDIDY 168 P+ R + + + + + + + L+D + Sbjct: 98 VSPRPEFARKPTRTDAAMVAGMLDLALEGMESLLVAEDDLVWAGGFRYASFLDDPRPLGL 157 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228 L ++ + +++ S +L +P + + + + Sbjct: 158 LLEDVPYR----LVQAQISLAGGMKTGSLMLALPADGRGR-KPRRPDAVAPQAGAALMFA 212 Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSC 287 + + ++ + L V+ LK+G V+P L+ G+ + Sbjct: 213 AAMNEQVMAADCTLEAVLAKVTLPLAAVMKLKVGDVLPLGTAALDRIALTGITGQPVAVG 272 Query: 288 ELGRVGKNYTIRIT 301 LG+ +R+ Sbjct: 273 RLGQNRGMRAVRVD 286 >gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6] gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6] Length = 458 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 82/285 (28%), Gaps = 26/285 (9%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G T++ + S + DL + + QS + + + Sbjct: 29 GASNGSFTLKVLRRSFARAASEL--------CDLPLAV-LAGRQSNRAPEELSDLLSDQH 79 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK----RT 138 LV L++ R+ + + + + Sbjct: 80 LLIVLDGPDGRVGAATMDAALVTALIQKQTIGQ-IMGKAPSERNYTPTDAAMTAGFLELS 138 Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 ++ +L+ T D + + ++ +++ + + S Sbjct: 139 FEKVLGLLDGQADQTLFKGYRFGAQIDSVRNLVLGLEAEDYRLISMTVDIALGTMQGSIN 198 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 L++P+ T + L ++ L + + + L ++ Sbjct: 199 LLLPEPTPEELGLAGAAAGP-----------SLGSSMGNLRAELSAVLCKMRLPLNELSN 247 Query: 259 LKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIRITD 302 LK G VIP L S G+ I +LG++ + +R+ + Sbjct: 248 LKPGDVIPLEQAFLYETDLISIGGQSIAQGKLGQMNGSRAVRLNE 292 >gi|258622512|ref|ZP_05717534.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262173378|ref|ZP_06041055.1| putative flagellar motor switch protein [Vibrio mimicus MB-451] gi|258585212|gb|EEW09939.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261890736|gb|EEY36723.1| putative flagellar motor switch protein [Vibrio mimicus MB-451] Length = 267 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 35/210 (16%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS---LSTVEKKLAKRTIAQISAVLNQ 148 F+ N ++I L + GA+ R L+ + ++ +R Sbjct: 87 GGRVFVHADNVVLIKLADRFYGAN-------EERDSTKLTNSDLRIQERI---------- 129 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + D + +N + + + A L + L++ Sbjct: 130 -------SKLIITKLAPDDMWAMSDFAPTNGVGLHAELIIQFDGFAGRVHLKL-DSNLIQ 181 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 T + L Q+ + DL PF V ++ + K L D+V+LK G + Sbjct: 182 TLVEQLELQS-----NTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIE 236 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTI 298 S + ++S + + Sbjct: 237 LPSDIPI--SIGHQPLFSGRIAERDDQLVL 264 >gi|84686561|ref|ZP_01014454.1| possible flagellar switch protein FliM [Maritimibacter alkaliphilus HTCC2654] gi|84665474|gb|EAQ11951.1| possible flagellar switch protein FliM [Rhodobacterales bacterium HTCC2654] Length = 378 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 82/246 (33%), Gaps = 17/246 (6%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVE 131 I+ E+ + + I + + L+E + +P+ R + + Sbjct: 63 IVEGIGEHALMALIEGPE-GRYGLILVDPDTLAALIEIQ--TTGRVVPRPATARPPTRTD 119 Query: 132 KKLAKRTIAQISAVLN-QCISTTQESSPNLEDF-YDIDYLKKNTNRLSNEFVTTINMNMT 189 + I ++ +L + + +P L F Y + + ++ + V +++ Sbjct: 120 AIMCADFIDRVLELLEDRTAEADIDIAPALGGFRYALALSEARAIPMTLDDVPYRRFHVS 179 Query: 190 I----ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + + +I+P + ++ Q+ A + V + Sbjct: 180 LDLGRGAKQGTLDVILPFNAAPSGAAAATNADPAGFTQA------LAEVVGEAEVLLRGT 233 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRI 304 ++ + L +V L +G VIP + NG+ + LG G + IRI Sbjct: 234 LHRLQMPLAEVAGLSVGSVIPIPREALGQVAIEDINGRTVKHGRLGMSGGHRAIRIGAVA 293 Query: 305 NFDQKS 310 + + Sbjct: 294 EAEPQM 299 >gi|258624665|ref|ZP_05719600.1| putative flagellar motor switch protein [Vibrio mimicus VM603] gi|258583057|gb|EEW07871.1| putative flagellar motor switch protein [Vibrio mimicus VM603] Length = 267 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 35/210 (16%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS---LSTVEKKLAKRTIAQISAVLNQ 148 F+ N ++I L + GA+ R L+ + ++ +R Sbjct: 87 GGRVFVHADNVVLIKLADRFYGAN-------EERDSTKLTNSDLRIQERI---------- 129 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 S + D + +N + + + A L + L++ Sbjct: 130 -------SKLIITKLAPDDMWAISDFAPTNGVGLHAELIIQFDGFAGRVHLKL-DSNLIQ 181 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 T + L Q+ + DL PF V ++ + K L D+V+LK G + Sbjct: 182 TLVEQLELQS-----NTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIE 236 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTI 298 S + ++S + + Sbjct: 237 LPSDIPI--SIGHQPLFSGRIAERDDQLVL 264 >gi|28901395|ref|NP_801050.1| putative flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836038|ref|ZP_01988705.1| putative flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260362949|ref|ZP_05775818.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|260880236|ref|ZP_05892591.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|260895353|ref|ZP_05903849.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|260901178|ref|ZP_05909573.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|28809942|dbj|BAC62883.1| putative flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|29423527|gb|AAO73589.1| lateral flagellar FliM-like motor switch protein [Vibrio parahaemolyticus] gi|149750792|gb|EDM61537.1| putative flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308085727|gb|EFO35422.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|308092442|gb|EFO42137.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|308109388|gb|EFO46928.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|308112168|gb|EFO49708.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] Length = 272 Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 92/291 (31%), Gaps = 40/291 (13%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQS 67 + PL LL + I +L L + + + V+ S TS Sbjct: 11 DIKPLDVELLGKPI------HIIRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDL 64 Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127 +FS + + F+ ++ L + GA Sbjct: 65 HRFSPAMMDKDQTS----THKHQEGGMVFVHGDTQTLVKLADRFYGA------------- 107 Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187 E+ +A T + + L + IS + D + + +N Sbjct: 108 -NTERSVATLTASDLR--LQERISRI-----IIGWLAPQDMWEACEYEAPRGIGLCVQLN 159 Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 +T E S L + L++T + L Q+ DL +PF R V ++ ++ Sbjct: 160 ITFEGYQGSMYLKL-DTHLIQTLIEQLELQS-----DVDLYEPFCRSLESTPVRLNVVLS 213 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 K L DVV+LK ++P +S + +++ + + Sbjct: 214 KKTMALSDVVSLKPDDIMPIEL--LNTVPVSIGNQPLFTGRIAEQDGQLVL 262 >gi|311086395|gb|ADP66476.1| flagellar motor switch protein FliM [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 300 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 10 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 64 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 65 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 124 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 ++ N + KK L+ F+ N I N F +IP+ Sbjct: 125 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 183 Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L S S + E I+ Y + VNI ++I + + L Sbjct: 184 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 243 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G V+ K + I+ R + I I + I+ +S ++ Sbjct: 244 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 294 >gi|257471133|ref|ZP_05635132.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 300 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 10 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 64 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 65 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 124 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 ++ N + KK L+ F+ N I N F +IP+ Sbjct: 125 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 183 Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L S S + E I+ Y + VNI ++I + + L Sbjct: 184 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 243 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G V+ K + I+ R + I I + I+ +S ++ Sbjct: 244 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 294 >gi|219682014|ref|YP_002468398.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621747|gb|ACL29903.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 315 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 25 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 79 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 80 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 139 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 ++ N + KK L+ F+ N I N F +IP+ Sbjct: 140 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 198 Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L S S + E I+ Y + VNI ++I + + L Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G V+ K + I+ R + I I + I+ +S ++ Sbjct: 259 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 309 >gi|212704407|ref|ZP_03312535.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098] gi|212672128|gb|EEB32611.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098] Length = 234 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 17/178 (9%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 +E+ ++++ + F + +E L + V +LL Sbjct: 54 SMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVLDRAFVFSLL 113 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN-----QCISTTQESSPNLEDF 163 E GA + R L+ +E LA++ + A + S +L Sbjct: 114 EEFFGAGGFE--RPGRRPLTALETMLARKFADRFLAAFDLAGKPSSWHPRCGHSLSLPRL 171 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNK 219 + ++ L+ + + L +P T L K Sbjct: 172 AVLVPDEQPVWHLA--------FRSLLGGRPGALHLCLPEDFSTHLAVRSALPGPGRK 221 >gi|310814876|ref|YP_003962840.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare Y25] gi|308753611|gb|ADO41540.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare Y25] Length = 340 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/296 (10%), Positives = 82/296 (27%), Gaps = 29/296 (9%) Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94 + + ++ + E L ++ G I+ + + + Sbjct: 20 GAQPQRVLRQSFARALTEVGGLRATLALPDVGEGVLDDILPALPDGMILFSLVCDG-DIV 78 Query: 95 FFIGCSNNLVITLLENLLGASH-----------ETIPQLYNRSLSTVEKKLAKRTIAQ-- 141 + L + ++E + R ++V++ L + + Sbjct: 79 GLMAFDAQLRMAVVEAQTLGEPYHASMPEPRGEPYHASMPERPRTSVDEVLCQPVADRCI 138 Query: 142 ---ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---NVAS 195 I+ L S + D + + M + + A Sbjct: 139 TDLIAEALAAPTSGWSVQAWVEGVVCDRPFSGGRDAAFALSHGAYRQMRIGVGISAERAG 198 Query: 196 SFVLIIP----QETLLKTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 S VL++P + + + ++ + S ++ R V++ ++ Sbjct: 199 SLVLLLPVEGARAAVAQRRKLAEDAPARAVEASRSRHAGWSLSINRNVMGAAVDLQAVLH 258 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD 302 + L + G V+ L + + +LG+ G IR+ + Sbjct: 259 RMRLPLSQIEGWAAGDVVMMPGASLAAVRLVGVADTPVGTGQLGKAGGMRAIRMKE 314 >gi|187732543|ref|YP_001879724.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94] gi|187429535|gb|ACD08809.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94] Length = 122 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 F +I P LL S N+ ++ D R+ + + T L Sbjct: 8 PFSMIEPLRELL-----VNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQ 62 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 ++ LK G V+P I +G + + + G + Y +RI IN Sbjct: 63 ILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 111 >gi|219681458|ref|YP_002467843.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624301|gb|ACL30456.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 315 Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 25 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 79 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 80 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 139 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 ++ N + KK L+ F+ N I N F +IP+ Sbjct: 140 AFSEIYKKYFVKEINFFNTKIFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 198 Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L S S + E I+ Y + VNI ++I + + L Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +G V+ K + I+ R + I I + I+ +S ++ Sbjct: 259 VGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 309 >gi|15616702|ref|NP_239914.1| flagellar motor switch protein FliM [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386787|sp|P57182|FLIM_BUCAI RecName: Full=Flagellar motor switch protein FliM gi|25403543|pir||H84938 flagellar motor switch protein fliM [imported] - Buchnera sp. (strain APS) gi|10038765|dbj|BAB12800.1| flagellar motor switch protein fliM [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 315 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 102/293 (34%), Gaps = 14/293 (4%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 25 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 79 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 80 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 139 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 ++ N + KK L+ F+ N I N F +IP+ Sbjct: 140 AFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLIPKS 198 Query: 205 TLLKTTLISLSSQNKSENQS--EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLK 260 L S S + E I+ Y + VNI ++I + + L Sbjct: 199 ILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLNDIYNVEVNIISKIIGISVSYDKIYNLS 258 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 IG V+ K + I+ R + I I + I+ +S ++ Sbjct: 259 IGDVLSIKKPNK--ITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSESNQD 309 >gi|89055183|ref|YP_510634.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1] gi|88864732|gb|ABD55609.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1] Length = 388 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 66/215 (30%), Gaps = 5/215 (2%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV-LNQCI 150 + + LV L+E E R ++ +++ L + + + A + Sbjct: 85 GRRGLVALDHPLVDALIEVQATGEVEKTNHPA-RKVTRIDEALCRDFLDLVLAAFAQETA 143 Query: 151 STTQESSPNLEDFYDI--DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 P+ + I + + N + + VL++P + + Sbjct: 144 GQAGRDWPDRMRYGSIITERAQLNLLMPERGYRVLRTSVTMGGHKTGDLVLVLPSDPAIA 203 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S+ + + D + +D + L V L G ++PF Sbjct: 204 RRGGSVEQPSAPAEAPKGWGDRMLGAISTAPMALDAVLMRTIMPLGKVEDLAQGDLVPFD 263 Query: 269 HREKTCAILSANGKEIY-SCELGRVGKNYTIRITD 302 H + + L ++ LG+V +R D Sbjct: 264 HNDLSAISLEDEIGHVFARGALGQVSGRRAVRFGD 298 >gi|224825754|ref|ZP_03698858.1| surface presentation of antigens (SPOA) protein [Lutiella nitroferrum 2002] gi|224601978|gb|EEG08157.1| surface presentation of antigens (SPOA) protein [Lutiella nitroferrum 2002] Length = 291 Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 76/206 (36%), Gaps = 11/206 (5%) Query: 97 IGCSNNLVITLLENLLGAS--HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + L++ +L+ G R + E++LA+ +++A L Q + Sbjct: 86 VNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTARLVQAVRRLS 144 Query: 155 ESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL-I 212 P L+ ++ L + + + AS L + + + Sbjct: 145 RRPLPTLKAPPAVETLPFPPGDAP-AWHMQLTLGEAGSGGASQIGLALDAAVFAQVLRQL 203 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 L + + L PFA QL++ + R+ K+ TL +++ L++G V+P ++ Sbjct: 204 PLQAALPGPAAGKTLARPFAE---QLSIRLSARLMEKRLTLGEILDLRVGSVLPVSLQQ- 259 Query: 273 TCAILSANGKEIYSCELGRVGKNYTI 298 A + +++ + + Sbjct: 260 -QADVYIGRTRVFTAAVAESHGKLCL 284 >gi|213418731|ref|ZP_03351797.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 102 Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 2/100 (2%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S ++ ++ D R+ + + L ++ LK G V+P I Sbjct: 5 ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIA 62 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 +G + + + G V Y +R+ IN SL K Sbjct: 63 HVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEEQPK 102 >gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1] Length = 346 Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 48/331 (14%), Positives = 111/331 (33%), Gaps = 39/331 (11%) Query: 18 LARLTGKLGDKKTIEKISSSL----GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 + +L G + + G + + D+ I+ + + K ++ Sbjct: 12 IDKLLGGSDTGGVLTLEEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNV 71 Query: 74 IHSF-KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131 F E V S + + + LV + + ++G S E +L LS V Sbjct: 72 KSDFSGEQVVVSVEYIEGLEGLNVLVLNKKLVAVIADLMMGGSGEVETEELDEIKLSAVG 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNM 188 + + + + + L++ + T SP + + D +++ V + + Sbjct: 132 EAMNQM-MGSAATSLSELLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEI 190 Query: 189 TIENV-ASSFVLIIPQETLLKT----------------------------TLISLSSQNK 219 IE + S F +I + + K + + Sbjct: 191 EIEGLPKSKFYQVISADLVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKP 250 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 SE + ++ + + + + + TLK V+ + G +I + Sbjct: 251 SETRKTEVPSDKLELLLDIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILV 310 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK I E+ + +N+ +RIT+ ++ ++ Sbjct: 311 NGKLIARGEVVVIDENFGVRITEIVSPKERL 341 >gi|328469329|gb|EGF40275.1| putative flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 272 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 34/269 (12%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 I +L L + + + V+ S TS +FS + + Sbjct: 27 IRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDLHRFSPAMMDKDQTS----THKH 82 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 F+ ++ L + GA E+ +A T + + L + Sbjct: 83 QEGGMVFVHGDTQTLVKLADRFYGA--------------NTERSVATLTASDLR--LQER 126 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 IS + D + + + +N+T E S L + L++T Sbjct: 127 ISRI-----IIGWLAPQDMWEACEYEAPRDIGLCVQLNITFEGYQGSMYLKL-DTHLIQT 180 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + L Q+ DL +PF R V ++ ++ K L DVV+LK ++P Sbjct: 181 LIEQLELQS-----DVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIEL 235 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 +S + +++ + + Sbjct: 236 --LNTVPVSIGNQPLFTGRIAEQDGQLVL 262 >gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267] gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267] Length = 277 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 89/240 (37%), Gaps = 8/240 (3%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 V + ++ + + L+ + E +LG N +LS E AK Sbjct: 42 PPLVVANVTVGGDVTAKMMLVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + I + + + + +++L ++ N + F ++ I +V+ Sbjct: 98 VFSNILGAFSTSLGAQKGMPKLNFEVAKVNFLDESANLDVSAFEKIYIYSVKIGDVSEHI 157 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLK 254 +++ + S ++ DLI R + + + RI K+ LK Sbjct: 158 AVVLDFALVKFLNKDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLK 217 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 DV+T+ IG VI + + K + E+ V N+ I+IT +I ++ L+ Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQIT-QIGTKKERLEQL 276 >gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277] gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277] Length = 277 Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 8/240 (3%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 V + A ++ + + L+ + E +LG N +LS E AK Sbjct: 42 PPLAVANIAVSGDTTAKMILVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + I + + + + +++L ++ N N F ++ I +V+ Sbjct: 98 VFSNIMGAFSTSLGAQKGMPKLNFEVAKVNFLDESANFDLNAFEKIYVYSVKIGDVSEQI 157 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLK 254 +++ + ++ DL R + + + RI K+ LK Sbjct: 158 AVVLDFALVKFLNKDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLK 217 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 DV+T+ IG VI + + K + E+ V N+ I+IT +I ++ L+ Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQIT-QIGTKKERLEQL 276 >gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga sp. RQ2] Length = 346 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 37/309 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95 +G + + D+ I+ + + K ++ F E V S Sbjct: 35 EIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYTEGLEGLN 94 Query: 96 FIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + LV + + ++G S E +L LS V + + + + + L++ + T Sbjct: 95 VLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQM-MGSAATSLSELLGITI 153 Query: 155 ESSPNLEDFYDIDYLKKN-----TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 SP + + D N + V M + S F +I + + K Sbjct: 154 NISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPK-SKFYQVISADLVKKM 212 Query: 210 ----------------------------TLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 + + SE + ++ + + Sbjct: 213 YEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLLDIPLR 272 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + TLK V+ + G +I + NGK I E+ + +N+ +RIT Sbjct: 273 VTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRIT 332 Query: 302 DRINFDQKS 310 + ++ ++ Sbjct: 333 EIVSPKERL 341 >gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10] gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermotoga naphthophila RKU-10] Length = 346 Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 100/309 (32%), Gaps = 37/309 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95 +G + + D+ I+ + + K ++ F E V S Sbjct: 35 EIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYTEGLEGLN 94 Query: 96 FIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + LV + + ++G S E +L LS V + + + + + L++ + T Sbjct: 95 VLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQM-MGSAATSLSELLGITI 153 Query: 155 ESSPNLEDFYDIDYLKKN-----TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 SP + + D N + V M + S F +I + + K Sbjct: 154 NISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPK-SKFYQVISADLVKKM 212 Query: 210 ----------------------------TLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 + + SE + ++ + + Sbjct: 213 YEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLLDIPLR 272 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + + TLK V+ + G +I + NGK I E+ + +N+ +RIT Sbjct: 273 VTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENFGVRIT 332 Query: 302 DRINFDQKS 310 + ++ ++ Sbjct: 333 EIVSPKERL 341 >gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum Rt17-B1] Length = 357 Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 47/344 (13%), Positives = 109/344 (31%), Gaps = 51/344 (14%) Query: 18 LARLTGKLGDKKTIEKISSSL----GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 L L G+L ++++ I + G + + VDIS + + Sbjct: 12 LDALLGQLTSEESLTDIEKDMIGEVGNIILGSGATALSSILGRKVDISTPEVEVKTLKDL 71 Query: 74 IHSFKENFVFSQASLSSW-SSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131 V + + + ++G + +L LS V Sbjct: 72 RSEVSGEKVTVIIHFEGAVEGLNALVLEKKTAAEIADIMMGGLGKVESDELDEMKLSAVG 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF--VTTINMNMT 189 + + + + + L+ I + +P + + D + + + V +N M+ Sbjct: 132 EAMNQM-MGSAATSLSDMIKKSVNITPPTIEILNFDNAETKFPPIGEDADKVAKVNFTMS 190 Query: 190 IENVA-SSFVLIIPQ-----------------------------------------ETLL 207 IE++ + F L +P Sbjct: 191 IEDLEPAKFFLAMPIPFVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAA 250 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 K + S + +ID + + + +N+ + K +LK+++ L +G +I Sbjct: 251 KPVQFEDFGKVPSAQEQTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIEL 310 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + N K I E+ + +N+ +RIT+ ++ ++ Sbjct: 311 DKLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVSPKERLY 354 >gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata] Length = 110 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 1/105 (0%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 L+ + Q+ + ++ + + + + T+++ ++L++G I Sbjct: 4 LIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDCI 63 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD-RINFDQK 309 + K + + GRV + ++I D I +Q Sbjct: 64 TLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 108 >gi|254440956|ref|ZP_05054449.1| Surface presentation of antigens protein [Octadecabacter antarcticus 307] gi|198251034|gb|EDY75349.1| Surface presentation of antigens protein [Octadecabacter antarcticus 307] Length = 330 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 13/224 (5%) Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140 V SS L L+E R ++ V+ ++ + Sbjct: 73 VVLGLRDGSSAGLTGLFLMDQPLRSALVEMQTMG-CLLPAADEQRRVTRVDAVMSVPFAS 131 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL--SNEFVTTINMNMTIENVASSFV 198 Q+ A L + + P D ID L+ + N I + M + + Sbjct: 132 QLLAELAEVGFGAADFEPTAYDIGPIDDLRTAGLVMLQGNYRCWRITIQMGGGDAQGEML 191 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 + L+ + S K + +D + + + Sbjct: 192 IA------LRPKVPVSSLPVKDTSV---WSMALRSAVQDAPAELDAVLTRMTLPIHKIEA 242 Query: 259 LKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301 ++G V+ L+ G+ I + LG+V +R+ Sbjct: 243 FEVGHVLNLAGTTVGLVTLTGPGGEIISTARLGQVAGKRAVRVQ 286 >gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM 1251] gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 100/282 (35%), Gaps = 21/282 (7%) Query: 48 KIFKEKMDLDVDISYTSCQSGKFSH-----IIHSFKENFVFSQASLS-SWSSNFFIGCSN 101 K+F+ + ++ S + II S V S+S +S+ + + Sbjct: 6 KLFESETVGTIEALIGQAPSMELKERQELSIISSIVPPIVLLNVSVSGDTNSSAMLALTP 65 Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 LV +L + ++G + L AK + I ++ + +E Sbjct: 66 RLVASLSDMMMGEDQSNREDVSEDDL-----DAAKEIASNIFGAISNSLGAQKELPKLSF 120 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ--ETLLKTTLISLSSQNK 219 + +I+Y+ +N + + + I S +LI+ + +L +L K Sbjct: 121 NIDNIEYIDENKDVSLENYSKMFVYHFVIGETNSLLMLIMDENLSNILFQKDKTLGDDRK 180 Query: 220 SENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 +E+ + + + + RI KK LKDV+ + IG VI Sbjct: 181 NESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIGKKKMLLKDVLNMDIGSVIELNQLAN 240 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + I E+ V N+ ++IT I ++ L Sbjct: 241 DPLDILVDDNVIAEGEVVIVDGNFGVQIT-SIGTKRERLNQL 281 >gi|159043958|ref|YP_001532752.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12] gi|157911718|gb|ABV93151.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12] Length = 349 Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 59/189 (31%), Gaps = 7/189 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFYD-IDYLKKNTNR 175 + + R S++++ L + I + + ++ T E+ D + + Sbjct: 116 SPGEPEPRDASSIDQLLCRGFIERFFEAWGELLAGTSHEAWLAGYAPTDGMMQPDVLSVS 175 Query: 176 LSNEFVTTINMNMTIENVASS-FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 + + + + F + +P + L + + + + Sbjct: 176 APDIPYRLYLITAQFDGLREVAFSVALPVS---RPRPADLVETGDAARSTGEWAKDWRAA 232 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVG 293 + +D + + +L +V G + + L NG + + LG+ Sbjct: 233 VLESPAELDAVLCKLELSLDEVRRWAPGDRVSIPASALSSVSLGRRNGPSVATARLGQAR 292 Query: 294 KNYTIRITD 302 +R+ + Sbjct: 293 GVRALRLNE 301 >gi|662861|gb|AAA79753.1| flagellar protein [Pseudomonas aeruginosa] Length = 65 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + ++ L+D++ ++ G VIP E ++ ANG + +LG N ++I Sbjct: 1 LGATVVRRQLKLRDILHMQPGDVIPVEMPEH--MVMRANGVPAFKVKLGAHKGNLALQIL 58 Query: 302 DRINFDQ 308 + + + Sbjct: 59 EAVERSR 65 >gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans Z-2901] Length = 347 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 39/305 (12%), Positives = 94/305 (30%), Gaps = 38/305 (12%) Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFI 97 G + + + V I+ + K SF+E ++ + S + Sbjct: 45 GNISMGSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFTEGLSGKNVL 104 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTT 153 N V + ++G ++ + +E+ A+ + Q+ + L++ Sbjct: 105 IIKENEVGVIASLMMGGDGTHSGEI-----TELEQSAAQEAMNQMIASSATALSEIFKRK 159 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTT-INMNMTIENVASSFVLIIP---------- 202 SP + +E V NM + ++ P Sbjct: 160 INISPPRSKMINSRENDTYEPFGGHEVVVIYFNMQIEDLVDTDIMQVMEPATAKEVAQML 219 Query: 203 ----------------QETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTR 245 E L ++ + K+E Q D + + ++ Sbjct: 220 LAKVYGSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIPLKVEVV 279 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +K++++ G +I + NG + E+ VG+N+ I+I ++ Sbjct: 280 LGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIKINQILS 339 Query: 306 FDQKS 310 ++ Sbjct: 340 PKERL 344 >gi|254228802|ref|ZP_04922225.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262396479|ref|YP_003288332.1| putative flagellar motor switch protein [Vibrio sp. Ex25] gi|151938749|gb|EDN57584.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262340073|gb|ACY53867.1| putative flagellar motor switch protein [Vibrio sp. Ex25] Length = 272 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 33/241 (13%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+ S TS +F+ I + F+ ++ +I L + GAS Sbjct: 55 VEASLTSVDLHRFTPIKMDKDQTS----TYQHQEGGMVFVHGDSHTLIKLADRFYGAS-- 108 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 E+ T + + L + IS + +++ + Sbjct: 109 ------------TERSATTLTASDLR--LQERISRIIIGWLAPGEMWEMGEYEA-----P 149 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + +N+ ++ S L + L++T + L Q DL PF R Sbjct: 150 RGIGINVQLNIAFDDHQGSIHLKL-DSHLIQTLIEQLELQP-----DTDLYQPFCRSLET 203 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V ++ ++ KK L DVV L+ ++P +S + +++ + Sbjct: 204 TPVRLNVVLSKKKMPLSDVVGLQPNDILPIEL--LNTVPVSIGNQSLFTGRIAEQDGQLV 261 Query: 298 I 298 + Sbjct: 262 L 262 >gi|153840527|ref|ZP_01993194.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] gi|149745811|gb|EDM56941.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 20/73 (27%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 + + + + ++S Q KF ++ + I Sbjct: 58 ERFARHMRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITM 117 Query: 100 SNNLVITLLENLL 112 LV L++ L Sbjct: 118 EARLVFILVDKFL 130 >gi|153831629|ref|ZP_01984296.1| putative flagellar motor switch protein [Vibrio harveyi HY01] gi|148872139|gb|EDL70956.1| putative flagellar motor switch protein [Vibrio harveyi HY01] Length = 272 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 85/269 (31%), Gaps = 34/269 (12%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 I + SL L + + + ++ + + + +FS + + Sbjct: 27 IREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRFSPTLLDKDQTS----TYQH 82 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 +I +I L + GA+ E SL+ + +L +R I Sbjct: 83 QDGGMVYIHGDAQALIKLADRFYGAATERTST----SLTASDLRLQERISRII-----IN 133 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 QE E +++ E+ + L + T+++T Sbjct: 134 WLAPQEMWQTCE------------YETPRGIGLHAELSIAFEDFQGAIHLKL-DSTMIQT 180 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + L+ N DL PF R V ++ ++ K L DVV L+ ++P Sbjct: 181 LIEQLALHN-----DTDLYQPFCRSLESTPVRLNVVLSKKTMALSDVVRLQPDDILPIEL 235 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 +S + ++S + + Sbjct: 236 --LNTVPVSIGNQTLFSGRVAEQDGQLVL 262 >gi|114797535|ref|YP_758983.1| SPOA family protein [Hyphomonas neptunium ATCC 15444] gi|114737709|gb|ABI75834.1| SPOA family protein [Hyphomonas neptunium ATCC 15444] Length = 246 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 + + +EN+ ++ ++ ++ T+ + LK+G +IP + Sbjct: 142 AERRAAENKRPSTSRQLRDSVMSSSIRVEAVLDKISMTIGECSRLKVGDLIPLPDTDPGS 201 Query: 275 AILSA---NGK-EIYSCELGRVGKNYTIRITDRI 304 L+A NG+ EI CE+G + +++ + Sbjct: 202 VRLNAETVNGQIEIGQCEMGVWKRQRALKLKQPV 235 >gi|269960159|ref|ZP_06174535.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835130|gb|EEZ89213.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 272 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 85/269 (31%), Gaps = 34/269 (12%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 I + SL L + + + ++ + + + +FS + + Sbjct: 27 IREKLESLISESCSSLTNELQNWLSSNKIEANLVAVELHRFSPTLLDKDQTS----TYQH 82 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 +I +I L + GA+ E SL+ + +L +R I Sbjct: 83 QDGGMVYIHGDAQALIKLADRFYGAATERTST----SLTASDLRLQERISRII-----IN 133 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 QE E +++ E+ + L + T+++T Sbjct: 134 WLAPQEMWQPCE------------YETPRGIGLHAELSIAFEDFQGAIHLKL-DSTMIQT 180 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + L+ N DL PF R V ++ ++ K L DVV L+ ++P Sbjct: 181 LIEQLALHN-----DADLYQPFCRSLESTPVRLNVVLSKKTMALSDVVGLQPDDILPIEL 235 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 +S + ++S + + Sbjct: 236 --LNTVPVSIGNQTLFSGRVAEQDGQLVL 262 >gi|254510732|ref|ZP_05122799.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] gi|221534443|gb|EEE37431.1| Surface presentation of antigens protein [Rhodobacteraceae bacterium KLH11] Length = 376 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 14/194 (7%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQ-ISAVLNQCISTTQESSPN-LEDFYDIDYLKKNTNRL 176 R + + + + + L S +S + E + + L Sbjct: 114 PDPPAERPFTDTDAAMVAPLVEDTLGRALKLVESPADMTSLSGFEYASRAEDQRSLILAL 173 Query: 177 SNEF--VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E V + + + +++P+ L + ++ L A Sbjct: 174 VDEAYRVFDLTVELAGGARQGEVCILLPERPL-------SDGEQATDTAQSGLSLDQASG 226 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVG 293 + ++T I+ L + L +G ++P R +LS + LG+ Sbjct: 227 VMRAE--LNTVISRMSVPLTALSNLSVGDILPLQGARVDRVEVLSIDRARATVGRLGQCS 284 Query: 294 KNYTIRITDRINFD 307 IRI + ++ Sbjct: 285 GMRAIRINETLSAP 298 >gi|156976198|ref|YP_001447104.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116] gi|156527792|gb|ABU72877.1| hypothetical protein VIBHAR_04969 [Vibrio harveyi ATCC BAA-1116] Length = 272 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 85/269 (31%), Gaps = 34/269 (12%) Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 I + SL L + + + ++ + + + +FS + + Sbjct: 27 IREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRFSPTLLDKDQTS----TYQH 82 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 +I +I L + GA+ E SL+ + +L +R I Sbjct: 83 QDGGMVYIYGDAQALIKLADRFYGAATERTST----SLTASDLRLQERISRII-----IN 133 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 QE E +++ E+ + L + T+++T Sbjct: 134 WLAPQEMWQTCE------------YETPRGIGLHAELSIAFEDFQGAIHLKL-DSTMIQT 180 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + L+ N DL PF R V ++ ++ K L DVV L+ ++P Sbjct: 181 LIEQLALHN-----DTDLYQPFCRSLESTPVRLNVVLSKKTMALSDVVGLQPDDILPIEL 235 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298 +S + ++S + + Sbjct: 236 --LNTVPVSIGNQTLFSGRVAEQDGQLVL 262 >gi|77463738|ref|YP_353242.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] gi|77388156|gb|ABA79341.1| possible flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1] Length = 323 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 79/259 (30%), Gaps = 9/259 (3%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + ++ L +D+ C + ++ ++ + I + L+ Sbjct: 37 LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFHAVLEGPG-EGLGLIALAPPLLA 95 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFY 164 L+E R S + + + I + A L+ + + + + Sbjct: 96 GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLLEDEDRVWASGFRYA 154 Query: 165 DIDYLKKNTNRLSNEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + L + V + + + + +L +P + + SQ+++ Sbjct: 155 SFLDDPRPLGLLLEDCSYRVLVAEVELALGAKSGQLLLAVPADG--RGERPHDGSQDEAP 212 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSAN 280 D A + ++ ++ + L V+ + G +P + + Sbjct: 213 PPLTDFGAALAEQVMAVDCRLEAVLGRITLPLAQVLDWQPGDTVPLPQATLDHILFVGLD 272 Query: 281 GKEIYSCELGRVGKNYTIR 299 G + LG+ +R Sbjct: 273 GHPVAEGRLGQHRGMRAVR 291 >gi|332558593|ref|ZP_08412915.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] gi|332276305|gb|EGJ21620.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides WS8N] Length = 323 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 79/259 (30%), Gaps = 9/259 (3%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + ++ L +D+ C + ++ ++ + I + L+ Sbjct: 37 LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFHAVLEGPG-EGLGLIALAPPLLA 95 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFY 164 L+E R S + + + I + A L+ + + + + Sbjct: 96 GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLLEDEDRVWASGFRYA 154 Query: 165 DIDYLKKNTNRLSNEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + L + V + + + + +L +P + + SQ+++ Sbjct: 155 SFLDDPRPLGLLLEDCSYRVLVAEVELALGAKSGQLLLAVPADG--RGERPHDGSQDEAP 212 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSAN 280 D A + ++ ++ + L V+ + G +P + + Sbjct: 213 PPLTDFGAALAEQVMAVDCRLEAVLGRITLPLAQVLDWQPGDTVPLPQATLDHILFVGLD 272 Query: 281 GKEIYSCELGRVGKNYTIR 299 G + LG+ +R Sbjct: 273 GHPVAEGRLGQHRGMRAVR 291 >gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035] gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035] Length = 334 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 14/291 (4%) Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 H ++ R+ D ++ + + L + L + ++ +H+ Sbjct: 10 HSSVIQRMAQAARDGSDSRQM--TPVKALRLSLARAADTLFGLGLTVATVEQMRVPLAHV 67 Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133 S + + + + + + L+E S R+ + + Sbjct: 68 GRSLGDAGLLVLLEGDG-GARGALCLDSQFLAGLIEVQTTGSVR-PGLARPRAATRTDAA 125 Query: 134 LAKRTIA----QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 + I + + L Q D + + + + +++ Sbjct: 126 MVAPLIDAVLTEFESQLAQEHDAPPPRRFGFGDMVEDLRGLSLLLVAPDFELLRLTVDLG 185 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 L++P + +S K N + + V +D + Sbjct: 186 PGAKTGRLDLLLPVIA-----SPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARL 240 Query: 250 KTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + L+D++ LK G ++PF ++ G + + ELG++ +R Sbjct: 241 RLPLRDILALKPGDLLPFQRETLNDTQLVGTRGHIVATAELGQMNGLRALR 291 >gi|99081347|ref|YP_613501.1| surface presentation of antigens (SPOA) protein [Ruegeria sp. TM1040] gi|99037627|gb|ABF64239.1| hypothetical protein TM1040_1506 [Ruegeria sp. TM1040] Length = 420 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 79/252 (31%), Gaps = 27/252 (10%) Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL-----LENLLGASH 116 + Q+ + + + V L + +LG S Sbjct: 59 IAARQTNRVPEDLTGLLSDKHLLVVLDCPAGRIGAATLDAAAVTALIQQQTMGTVLGMSG 118 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + R+ + + + + ++ A ++ + + S + T L Sbjct: 119 D------ERNYTPTDAAMVAEFLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVL 172 Query: 177 SNEF----VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 E V +N+++ + L++P+ ++ ++ + + Sbjct: 173 GMEAEDYRVINLNVDLATGKMQGEICLVLPEPSV-----------DEYDEANAIRGPRLG 221 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGR 291 + + + + L+ TLK+G+++P L A NG+ I LG+ Sbjct: 222 SSVGSMRAELTAVLCKMRVPLRQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQ 281 Query: 292 VGKNYTIRITDR 303 + +R+ + Sbjct: 282 MNGARAVRLDQQ 293 >gi|91223207|ref|ZP_01258473.1| putative flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|91192020|gb|EAS78283.1| putative flagellar motor switch protein [Vibrio alginolyticus 12G01] Length = 272 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 33/241 (13%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117 V+ S TS +F+ S + + + FI + + +I L + GAS E Sbjct: 55 VEASLTSVDLHRFT----SVEMDKEQTSTYQHQEGGMVFIHGNPHTLIKLADRFYGASAE 110 Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 L+ + +L +R I E Sbjct: 111 RSAAT----LTASDLRLQERISRII-----IGWLAPGEMW------------DTGEYETP 149 Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 + +N+ ++ S L + L++T + L Q DL PF R Sbjct: 150 RGIGINVQLNIAFDDHQGSIHLKL-DGHLIQTLIEQLELQP-----DTDLFQPFCRSLET 203 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 V ++ ++ KK L DVV L+ ++P +S + +++ + Sbjct: 204 TPVRLNVVLSKKKMPLSDVVGLQPNDILPIEL--LNTVPVSIGNQSLFTGRIAEQDGQLV 261 Query: 298 I 298 + Sbjct: 262 L 262 >gi|90577377|ref|ZP_01233188.1| putative flagellar motor switch protein [Vibrio angustum S14] gi|90440463|gb|EAS65643.1| putative flagellar motor switch protein [Vibrio angustum S14] Length = 257 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 82/223 (36%), Gaps = 27/223 (12%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 ++ F+ + CS L+I L + + + +++++T + +L +R Sbjct: 56 GQHAAFTVLH--NDGGMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQER 113 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 I ++ + D + N LS++ I +++T E Sbjct: 114 -IGRLFSA----------------QIAPEDMWQPCDNSLSDDIGLFIQLSVTCEETIGDI 156 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 ++ I L++T + Q S +L F+++ V ++T + K+ L V+ Sbjct: 157 IICI-DSALIQTLTSVIGLQPTS-----ELNALFSQQLESTKVKLNTVLCEKQMPLDQVL 210 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 LK G + + + S + +++ + + I Sbjct: 211 QLKPGDIFDIDLLQSSPI--SIGQEHLFNGHVAEQNGQLVLII 251 >gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803] Length = 547 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 37/300 (12%), Positives = 99/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPHVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET---- 205 + +P F + + ++ + + + I N+ I ++ S I+P Sbjct: 368 EKMDMTPPEVKFVTLREEMEYLGEAMEGDELVQITFNIEIGDLLQSKMYQILPISEAKEM 427 Query: 206 ---LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV------------------NIDT 244 LL + Q + E + ED++ P + V N+ Sbjct: 428 VRRLLYPMVEGQEEQIEEEIEEEDIVAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKTL 547 >gi|126736779|ref|ZP_01752517.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2] gi|126713750|gb|EBA10623.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2] Length = 364 Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 36/291 (12%), Positives = 95/291 (32%), Gaps = 18/291 (6%) Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 LL R+T G + + + + L K + + L + + + + ++ + Sbjct: 9 LLRRMTRPQG--QEVADNPLTSSRAVRLALTKAANDTVGLVLTVQSVAEEVTSLDDMLGT 66 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + I + +LE + P R+ + +K L Sbjct: 67 LADELMLVALE-RDGGLAGLIALDMEMRAAVLEMETMGAVLAHPA-EARAPTLTDKTLCD 124 Query: 137 RTIAQISAV-----LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 + + L+ + + S L + + + +++++ + Sbjct: 125 PLLQAFLSAFPLAVLDTPLEGWMD-SVVLGHKIESTRAAGLVLADRDYRIVRLSVDLGVA 183 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + V+++P + + D F + +D ++ Sbjct: 184 ERQAELVIVLP-------VVQHAPEPETTPETFFDWDSDFQDRVSDAPARLDALLHRFPI 236 Query: 252 TLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 +L L++G V+P + +LS +G E+ +LG++G +R+ Sbjct: 237 SLATAQGLQVGSVLPLPGCTVNSVRLLSPDGHEVAQAKLGQIGGYRAVRLE 287 >gi|89072282|ref|ZP_01158861.1| putative flagellar motor switch protein [Photobacterium sp. SKA34] gi|89051814|gb|EAR57266.1| putative flagellar motor switch protein [Photobacterium sp. SKA34] Length = 257 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 82/223 (36%), Gaps = 27/223 (12%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 ++ F+ A + CS L+I L + NR L++V+ ++ + Sbjct: 56 GQHTAFTVAH--NDGGMMNFRCSAPLLIALADRFY-------HSPVNR-LNSVKSQVITK 105 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197 + ++ + Q S + + + LS++ I +++T E Sbjct: 106 SDLRLQERIGQLFSA---------QVAPEEMWQACDSSLSDDIGLVIQLSVTCEETIGDI 156 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257 ++ I L++T + Q S +L F+++ V ++T + K+ L V+ Sbjct: 157 IICI-DSALIQTLTSVIGLQPTS-----ELNALFSQQLESTKVKLNTVLCEKQMPLDQVL 210 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 LK G + + + S + +++ + + I Sbjct: 211 QLKPGDIFDIDLMQSSTI--SIGQEYLFNGHVAEQNGQLVLII 251 >gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus TCF52B] Length = 365 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 56/352 (15%), Positives = 120/352 (34%), Gaps = 59/352 (16%) Query: 18 LARLTGKLGDKKTIEKISSSL----GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73 L L +L + + + +I + G + + VDI+ + K S I Sbjct: 12 LDSLLNQLNEDEDLTEIEKDMFGEIGNIIMGSGTTALSTLLGRKVDITVPTVDLKKISEI 71 Query: 74 IHSF-KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131 +N V S + + LV + ++G + E ++ SLS V Sbjct: 72 KKEVTGKNAVVSIHFKGAIEGLNALIIPQMLVAQIANIMMGGTGEVENEEVDEISLSAVS 131 Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS---NEFVTTINMNM 188 + + + + + L+ + + +P + D D N ++ + V +N + Sbjct: 132 EAMNQM-MGAAATSLSDMLKKPVDITPPTVELIDFDGDNVNFPPIATSDDAVVAKVNFKL 190 Query: 189 TIENVA-SSFVLIIP-------QETLLK----TTLISLSSQNKSENQSEDLIDPFARKTY 236 IE + + F L +P + + + S ++ S +++ + A T Sbjct: 191 VIEGLEPADFFLAMPPEFVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTK 250 Query: 237 QLN-----------------------------------VNIDTRINLKK--TTLKDVVTL 259 + + ++ + L K TLK V+ L Sbjct: 251 NVEKNPVSVSPVQFQSFESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMEL 310 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 +G +I + NGK I E+ + +N+ +RIT+ + ++ Sbjct: 311 SVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVTPQERFY 362 >gi|83949668|ref|ZP_00958401.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM] gi|83837567|gb|EAP76863.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM] Length = 339 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/255 (10%), Positives = 69/255 (27%), Gaps = 16/255 (6%) Query: 56 LDVDISYTSCQSGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLG 113 L + +S ++ + + S + + + + ++E Sbjct: 44 LGLALSVSTVEQSRLSQKDLPEVLAGTGLTCLVE-DDRGRRGAVRLDFPALSAVIEIQTI 102 Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 ++ R L+ + L + + + + ++ Sbjct: 103 GRVAE-REVVERPLTRTDAALCAPLLDAVFEAFETGAEDLPDGQSWQGYRFGAMAEDAHS 161 Query: 174 NRLSNEF----VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229 L+ E + + + + A + L++P + + D Sbjct: 162 LSLALEADHYHLFRVGVMLGEAKRAGVYELLLP--VMDAPQVSKEKPGRP-----RDEPR 214 Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCE 288 + V + + L+ ++LK G + L A G + Sbjct: 215 ALSPVVMGAPVTLQAILARHSIPLEKALSLKAGDQLIVPGSGAMALRLEAPGGHLVSDGR 274 Query: 289 LGRVGKNYTIRITDR 303 LG+V IR+ + Sbjct: 275 LGQVNGMRAIRLRKQ 289 >gi|126462567|ref|YP_001043681.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] gi|126104231|gb|ABN76909.1| surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides ATCC 17029] Length = 323 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 80/259 (30%), Gaps = 9/259 (3%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + ++ L +D+ C + ++ ++ + I + L+ Sbjct: 37 LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFHAVLEGPG-EGLGLIALAPPLLA 95 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ-ESSPNLEDFY 164 L+E R S + + + I + A L+ + + + + Sbjct: 96 GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLLEDEDRVWASGFRYA 154 Query: 165 DIDYLKKNTNRLSNEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221 + L + V + + + + +L +P + + SQ++++ Sbjct: 155 SFLDDPRPLGLLLEDCSYRVLVAEVELALGAKSGQLLLAVPADG--RGERPHDGSQDEAQ 212 Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSAN 280 D A + ++ ++ + L V+ + G +P + + Sbjct: 213 PPLTDFAAALAEQVMAVDCRLEAVLGRITLPLAHVLDWQPGDTVPLPQATLDHILFVGLD 272 Query: 281 GKEIYSCELGRVGKNYTIR 299 G + LG+ +R Sbjct: 273 GHPVAEGRLGQHRGMRAVR 291 >gi|89070387|ref|ZP_01157694.1| possible flagellar switch protein FliM [Oceanicola granulosus HTCC2516] gi|89044034|gb|EAR50209.1| possible flagellar switch protein FliM [Oceanicola granulosus HTCC2516] Length = 381 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 66/243 (27%), Gaps = 24/243 (9%) Query: 72 HIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 ++ ++ V + A S L L+E + P R +S Sbjct: 54 EVVARLGTDDLVLALAGAEGVSG--LAALDPELRSALVECQTTGAVSPEPAPE-RPVSVA 110 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-----VTTIN 185 + L + + L + T + E L + + + Sbjct: 111 DAALTRPVVDAFLEELLAAAAPTALAGWG-EGVATAGRLDGARGAGLSLAEAGYRLVALT 169 Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 +++ ++ +P ++ + D FAR + Sbjct: 170 VDLGAGTREGRLLVALP-------------AREAPAPTASDWSGQFARAVQAAPAELRAV 216 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS-CELGRVGKNYTIRITDRI 304 ++ + L+ L GQV+P L + + LG+ IR+ Sbjct: 217 LHRFELPLERAEALAPGQVLPLEGVTVASVRLEGAERALVGHARLGQSAGLKAIRLGPPP 276 Query: 305 NFD 307 + Sbjct: 277 RPE 279 >gi|221639608|ref|YP_002525870.1| Surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides KD131] gi|221160389|gb|ACM01369.1| Surface presentation of antigens (SPOA) protein [Rhodobacter sphaeroides KD131] Length = 331 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 83/263 (31%), Gaps = 17/263 (6%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + ++ L +D+ C + ++ ++ ++ I + L+ Sbjct: 45 LARAGRDAFALALDVPRLDCLRRSLTELLEMPEDLSFYAVLEGPG-EGLGLIALAPPLLA 103 Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--------QCISTTQESS 157 L+E R S + + + I + A L+ + + + Sbjct: 104 GLVEVQTVGRVR-PQPAATRKPSRTDAAMVQDFIDRALAELDLLLIEDEDRVWAGGFRYA 162 Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217 L+D + L ++ V +++ + +L +P + + L Q Sbjct: 163 SFLDDPRPLGLLLEDCPYR----VLVAEVDLALGAKTGQLLLAVPADG--RGELPHHGGQ 216 Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAI 276 +++ D A + ++ ++ + L V+ + G +P Sbjct: 217 DEAPPPLSDFGAAMAEQVMAVDCRLEAVLGRITLPLAHVLDWQPGDTVPLPQATLDHILF 276 Query: 277 LSANGKEIYSCELGRVGKNYTIR 299 + +G + LG+ +R Sbjct: 277 VGLDGHPVAEGRLGQHRGMRAVR 299 >gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC 49179] Length = 292 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 88/261 (33%), Gaps = 29/261 (11%) Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 I F E+ + + + L + ++G + L L Sbjct: 35 VGDFI--FIEHASVVVQVKPQTNVTITLAVPVPMATALADLMVGGEGTSKQTLEKDDLDA 92 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 + K++ ++ L QE P L F + + L + + Sbjct: 93 I-KEIGSNIFGALTTALQ-----AQEVIPKLS-FEVSEAVDAQDASLLDPYSDGYEFGFE 145 Query: 190 IENVASSFVL-------------IIPQETLLK---TTLISLSSQNKSENQSEDLIDPFAR 233 +E V SSF + + PQ T ++ +L +S+ ++ Sbjct: 146 LEQVKSSFFIFCGGVFIDLFKKKVAPQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEA 205 Query: 234 K----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + +N+ RI KK LKDVV++ IG VI + + K I E+ Sbjct: 206 RNINMLLDIKLNVRVRIGQKKMILKDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEV 265 Query: 290 GRVGKNYTIRITDRINFDQKS 310 V N+ I+ITD + + Sbjct: 266 VIVDGNFGIQITDIGSKRDRL 286 >gi|330447939|ref|ZP_08311587.1| surface presentation of antigens family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492130|dbj|GAA06084.1| surface presentation of antigens family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 255 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 74/209 (35%), Gaps = 25/209 (11%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 CS L+I+L + + + + ++ L+ + +L +R ++V Sbjct: 66 GGMINFRCSAPLLISLSDRFYNSPVSRLNSVKSQVLTASDFRLQQRLGHLFASV------ 119 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 D + N LS + I ++++ E+ + + I + L Sbjct: 120 -----------IAPEDMWNECDNSLSGDIGLVIQLDVSCEDTLGTITICI------DSCL 162 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 I + +++ + F ++ V ++T + K+ L V+ LK G V + Sbjct: 163 IQTLTTVIGLQPIDNINEQFTKQLESTKVVLNTILCEKQMPLDQVLQLKPGDVFDIDLIQ 222 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRI 300 + S + +++ + + I Sbjct: 223 SSPI--SIGQEHLFNGHVAEQNGQLVLII 249 >gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37] gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37] Length = 368 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 73/273 (26%), Gaps = 15/273 (5%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 S ++ L + DL + + +S ++ + + Sbjct: 2 SPAKALRRALSRTADVMWDLALVTQSVTVESLDQDGVVEGLSAKDLLVLLDGPD-GTIGL 60 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 ++ ++E +P +R L+ + + I + ++ + Sbjct: 61 ASVDRQVMTGVVEVQTIQQVTQMPVDEDRVLTQTDAAMIAPLIDGTLHSMAGALADSPIG 120 Query: 157 S----PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212 + + +++ + I+P Sbjct: 121 EMLQGFRFGAMLEDARSASLLLDAAGYRAFRAQVDLALGRRKGCLSFILP------ERKP 174 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 S + D P A ++ +D ++ L TLK G V+ Sbjct: 175 VPRSAEQGG---ADAAGPHAAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDAL 231 Query: 273 TCAILSAN-GKEIYSCELGRVGKNYTIRITDRI 304 + A G + +G++ +R+T + Sbjct: 232 DRVEIIAGRGHMVAKGRMGQLNGARAVRLTWPV 264 >gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori Lithuania75] Length = 287 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 22/254 (8%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + + S S LV L + +LG + ++ N L K Sbjct: 42 LISTPYARVMVSVIEKEESSIELLAPVD--LVTALSDLMLGGEGASKEEMDNDDLDAF-K 98 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++A I+ L QE P L + K + + + + + +E Sbjct: 99 EMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKED-YAKAMVFSFKMEA 152 Query: 193 VASSFVLIIPQETLLKT------TLISLSSQNKSENQSEDLIDPFARKTY------QLNV 240 + S ++++ + ++Q +E + + + Sbjct: 153 ITESQIILLTTAAFERQFEKTHKEEKEETTQGAAEEVKTHDASLENIEIRNISMLLDVKL 212 Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+I Sbjct: 213 NVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQI 272 Query: 301 TDRINFDQKSLKNF 314 TD I ++ L+ Sbjct: 273 TD-IGTKKERLEQL 285 >gi|254465099|ref|ZP_05078510.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] gi|206686007|gb|EDZ46489.1| Surface presentation of antigens protein [Rhodobacterales bacterium Y4I] Length = 430 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 87/286 (30%), Gaps = 30/286 (10%) Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS-FKEN 80 +G + T++ + SL L + + + Q + S + + Sbjct: 35 SGAISSSLTLKALRRSLARAAADLCE--------LPLAV-LAARQCNRVSEDLARNLSDK 85 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLEN-LLGASHETIPQLYNRSLSTVEKKLAK--- 136 + + V L++ +GA R + + + Sbjct: 86 DLLVVLDCPN-GRVGAASMDAATVTALIQQQTIGA--VIGKAPNERLYTPTDAAMTAEFL 142 Query: 137 -RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVA 194 R+ A++ ++L + + + ++++ V +N+++ + Sbjct: 143 ERSFAKVVSMLEGQADQAIFAGYRFGAQVE-NVRSLVLGMEADDYRVIELNLDLACGAMQ 201 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 LI+P+ T + R + + + + L+ Sbjct: 202 GVMKLILPEPTAEELQESQGGGAQGP---------SLGRNLDSIRAELTAVLCKMRVPLR 252 Query: 255 DVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIR 299 D +LKIG +P L+ GK + LG++ + +R Sbjct: 253 DFTSLKIGDTLPLDQAFLYETDLLTIGGKPVAQGRLGQMNGSRAVR 298 >gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga mobilis SJ95] Length = 372 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 103/311 (33%), Gaps = 52/311 (16%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNFFIGCSNNLVITL 107 + ++I Y KF +II +F EN V + + NL + Sbjct: 61 TLSTLLRRKIEIQYPQTDIIKFKNIITNFEGENVVVTVEYKKGLYGLNTLVLPLNLTNII 120 Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCISTTQESSPNLEDF 163 + +LG + + R L + + Q+ S L+ + T + SP Sbjct: 121 ADLMLGKD---LENIEERELDDISLSAVSEAMNQMMGTASTALSDFLKTNIDISPPSSRV 177 Query: 164 YDIDYLKKNTNRLS---NEFVTTINMNMTIENVASSFVL-IIPQ------ETLLKTTLIS 213 + + +V +I N+ I +A + IP L++ T Sbjct: 178 VNFSEANIEFPPIETDKEAYVISIKFNVKINGIAETTFWQFIPMKFAQKIRELVEKTFGK 237 Query: 214 LSSQNKSENQSEDLIDPFARKTYQ--------------------------------LNVN 241 + +S S + + L+V Sbjct: 238 TTEDEESSKNSNTQKRSNSNVIKEKKVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVP 297 Query: 242 IDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 ++ ++ L T L ++++ L G +I + ANG+ I E+ + +N+ IR Sbjct: 298 LELKVELGSTKLNLREILELHEGSMIQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIR 357 Query: 300 ITDRINFDQKS 310 +T+ ++ ++ Sbjct: 358 VTEIVSLRERM 368 >gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP 102972] gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP 102972] Length = 256 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 33/221 (14%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 F+ ++++ITL + GA+ + L++ +++L +R ++ Sbjct: 69 GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 119 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 QE E + N +++ + LI+ ++ L Sbjct: 120 APQEMWQLHE------------GDIGNGIGLKAELSVRYADQHGVLTLIM------ESQL 161 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + +L F R V ++ ++ K L DV+ L ++P Sbjct: 162 VQTLIDQLDLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSDVLRLTPNDILPIDL-- 219 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + +S + ++S + + +N D++SL+ Sbjct: 220 LSTVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 256 >gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826] gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826] Length = 284 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 100/263 (38%), Gaps = 19/263 (7%) Query: 66 QSGKFSHI----IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + G+ + + K V + +LS ++ I C+ L+ + E ++G Sbjct: 26 EIGERNEFDAPAQNGIKPPVVMASVTLSGDINAKAEIACTPVLISAVSEWMMG----EEE 81 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 N +L + E AK + + + + + + + ++++L +N++ + F Sbjct: 82 ISKNENLGSDELDAAKEIFSNLFSAFSTSLGAQKGMPKISFEVINVNFLDENSSLDFSVF 141 Query: 181 VTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTYQ- 237 N+ IE++ + + + K+ L F+ + + Sbjct: 142 EKLFLFNIKIEDLNEHVAFVCDHTLMRFFEPAKSEPVDAAKAAAAPHALKGEFSAEEMRN 201 Query: 238 ----LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 ++V + R+ + LKDV+T+ IG VI + K I E+ Sbjct: 202 IGLIMDVRLPMRVRIGSKRMLLKDVLTMDIGSVIELNQLANDPLEILIGDKVIALGEVVI 261 Query: 292 VGKNYTIRITDRINFDQKSLKNF 314 + N+ I+IT +I ++ L+ Sbjct: 262 IDGNFGIQIT-QIGSKRERLQQL 283 >gi|269967104|ref|ZP_06181171.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269828241|gb|EEZ82508.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 218 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 29/207 (14%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 FI + + +I L + GAS E L+ + +L +R I Sbjct: 31 GGMVFIHGNPHTLIKLADRFYGASAERSAAT----LTASDLRLQERISRII-----IGWL 81 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 E + +N+ ++ S L + L++T + Sbjct: 82 APGEMW------------DTGEYETPRGIGINVQLNIAFDDHQGSIHLKL-DGHLIQTLI 128 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L Q DL PF R V ++ ++ KK L DVV L+ ++P Sbjct: 129 EQLELQP-----DTDLFQPFCRSLETTPVRLNVVLSKKKMPLSDVVGLQPNDILPIEL-- 181 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTI 298 +S + +++ + + Sbjct: 182 LNTVPVSIGNQSLFTGRIAEQDGQLVL 208 >gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori SouthAfrica7] Length = 282 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 19/253 (7%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + +I + + S S LV L + +LG + ++ N L Sbjct: 38 ADLISAPYARVMISAIDKSESHIELLAPVG--LVTALSDLMLGGEGASKEEMDNDDLDAF 95 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 K++A I+ L QE P L + K+ + + + + + + Sbjct: 96 -KEMASNIFGAIATSLKS-----QELLPKLNFTTTNAEIAKDLPKKED-YTKAMVFSFKM 148 Query: 191 EN-VASSFVLII--PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY------QLNVN 241 E S +L++ E+ +T S+++ +E + + +N Sbjct: 149 EALKESQMILLVTSAFESQFETKKEPESAESATEETKTHDASLENIEIRNISMLLDVKLN 208 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + RI KK LKDVV++ IG V+ + + K I E+ V N+ I+IT Sbjct: 209 VKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT 268 Query: 302 DRINFDQKSLKNF 314 D I ++ L+ Sbjct: 269 D-IGTKKERLEQL 280 >gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3] Length = 547 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 35/300 (11%), Positives = 101/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + +S H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVESINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMKVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMMEEEEEIVTEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO] Length = 343 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 98/287 (34%), Gaps = 31/287 (10%) Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLG 113 +V ++ ++ SF E V Q S F I +L + + ++G Sbjct: 50 GREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFPQSLGARIADMMMG 109 Query: 114 ASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 S E +L LS + + + + + +++ Q S ++ + N Sbjct: 110 GSGEPESFELDEVRLSAITETMNQMMGSSTTSLSEQTKKKVSISKLKVDLVKKDEEPVLN 169 Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIP-------QETLLKTTLISLSSQ-------- 217 N +++ + S +LI P + + + Sbjct: 170 FNLAQVLAYVAYEIDLENSHK-SKILLIAPALFFKDIYKIIHPAQEPEKEKEQKREEEKV 228 Query: 218 ----------NKSENQSEDLIDPFARKTYQL-NVNIDTRINL--KKTTLKDVVTLKIGQV 264 ++S+ + F+ K L +V + + L K TLK V+ + IG + Sbjct: 229 KVQPVQFQEFDQSQRAAVSTPSEFSDKLELLLDVPLKVVVELGRAKMTLKQVLEMNIGSL 288 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 I + NG+ I E+ V +N+ +RIT+ + Q+ Sbjct: 289 IELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRIY 335 >gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 272 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 33/221 (14%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 F+ ++++ITL + GA+ + L++ +++L +R ++ Sbjct: 85 GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 135 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 QE E + N +++ + LI+ ++ L Sbjct: 136 APQEMWQLHE------------GDIGNGIGLKAELSVRYADQHGVLTLIM------ESQL 177 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + +L F R V ++ ++ K L +V+ L ++P Sbjct: 178 VQTLIDQLDLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSEVLRLTPNDILPIDL-- 235 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + +S + ++S + + +N D++SL+ Sbjct: 236 LSTVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 272 >gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228] gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20] gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228] gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20] Length = 278 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 15/247 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++ I L+ + E ++G N L E Sbjct: 39 DTLKPPLVYAVFNIKE-GGKIGILAGAVLMSAIGEWMMG----EEEISKNDQLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ + +++ +N + +F ++ IE++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFEISSCEFVAENVDFK--DFTKLYFFDVKIEDLE 151 Query: 195 SSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRIN 247 LI+ Q + + + S + SE+ + + + + + RI Sbjct: 152 EQISLIVDQTLHNILSGKAADDGHAHSSSNSENKGFEISEELKNINLIMDVRLPVRVRIG 211 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 NKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IGSK 270 Query: 308 QKSLKNF 314 ++ L+ Sbjct: 271 KERLEQL 277 >gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] Length = 546 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISIPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329] Length = 321 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGTQE 319 >gi|260432994|ref|ZP_05786965.1| surface presentation of antigens protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416822|gb|EEX10081.1| surface presentation of antigens protein [Silicibacter lacuscaerulensis ITI-1157] Length = 331 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 31/271 (11%), Positives = 81/271 (29%), Gaps = 26/271 (9%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L + E+ L + + QSG+ + + + + LV Sbjct: 3 LARAAVERFRLSASV-IGAKQSGRRQEAVTEGLDESRLFLLFAADEQRVACLAMDPGLVA 61 Query: 106 TLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 +++ E P R + + + + ++ A Q + ++ + Sbjct: 62 AVIQKQ--TIGEVSPDPPPVRKFTDTDAAIVAPLVEEMLARGAQLVEEPEDKA----RLS 115 Query: 165 DIDYLKKNTNRLSNEFVTT--------INMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 ++L + + + + + + L++P + Sbjct: 116 GYEFLSRASGLRAVSLALVQDVYDVFDLTVELEGGVRQGVVSLLLP---------PQSAK 166 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + E Q + A + L + I L ++ L G+V+P + Sbjct: 167 PDSHEEQGAEGGAKLADASGVLRAELTAVIAQMHLPLSELSALTEGKVLPLSNARLDRIA 226 Query: 277 LSANGKE-IYSCELGRVGKNYTIRITDRINF 306 + A + + + LG+ G +R+ + Sbjct: 227 MQAIDRTRVATGRLGQCGGMRAVRLNEAHAS 257 >gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28] Length = 547 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 99/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244 L + + E + ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQIEPVYIDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3] gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29] Length = 547 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 99/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244 L + + E + ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842] gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842] Length = 545 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEETATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545 >gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar sotto str. T04001] Length = 545 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545 >gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407] gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 545 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545 >gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2] gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 546 Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876] gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W] gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185] gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676] Length = 545 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545 >gi|114798089|ref|YP_759234.1| SPOA domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114738263|gb|ABI76388.1| SPOA domain protein [Hyphomonas neptunium ATCC 15444] Length = 325 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 77/277 (27%), Gaps = 31/277 (11%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF-VFSQASLSS 90 + L + +E L S + + + E S + Sbjct: 62 GEAREEAARRISARLSRAMREHCGLAAAFSVKRVSPASLAQAVSARDEPGQAIVCCSGAD 121 Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + L ++E G +P ++LS ++ L + Sbjct: 122 GDVAAMLVIGAGLAQIMIETACGG---PVPNGQPKALSPIDLALVEGL------------ 166 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-LKT 209 T+ +P + ++ + ++ + +T+ A P L LK Sbjct: 167 --TRPLAPFIGRGLGFAGVETDPLFAASIAAPGVAYEITLSVRAGGADW--PARLLVLKP 222 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 L + + V + R+ + + + +L+ G + Sbjct: 223 FLAEAPEAEAAPTRGAHASGAL-------TVLMTARVARVEMPISRLTSLRPGVTLLLGV 275 Query: 270 REKTCAILSANGKE---IYSCELGRVGKNYTIRITDR 303 L + G + ++GR G +RI+ R Sbjct: 276 PADQPVELLSGGLDGDVAAEAQIGRKGNRMALRISKR 312 >gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7] gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7] Length = 360 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 117/357 (32%), Gaps = 62/357 (17%) Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60 + G + +P + D+ ++ I +G + + ++ V I Sbjct: 15 LNGSASTPEPTPTDTL----------DQTQVDIIG-EIGNISMSQAATTLSDILNHRVTI 63 Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETI 119 + + KF II + V + + + + I + + ++ Sbjct: 64 TTPVVSTLKFQEIIDASVTPKVVTTIEFKKGLEGSNLLMMNERDAIIIADLMMDGDGN-- 121 Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN----TNR 175 N+ + +E + Q+ ++T E ++ + +N Sbjct: 122 --PENKEFTELELSAVGEAMNQMMGSAATAMATMLERIVDILPPDVEVWKDQNNVTYDRI 179 Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS-----QNKSENQSEDLID 229 + V I MT+ + + S + + +T+ + I L+ Q++ Q+E++ Sbjct: 180 SGDTMVCKIAFQMTVGDFIESEIMQVFTLDTVRNISKIVLADEGEVIQDRQLPQAEEMTA 239 Query: 230 PFA------------------------------------RKTYQLNVNIDTRINLKKTTL 253 P A + + + K T+ Sbjct: 240 PIAPAANQPTQETAGKIGIQKPEFQELTHAGSLKTPRNLDLIMDVPLQFSVMLGESKKTI 299 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 KD+++L G V+ + NGK I E+ + +++ IRIT+ ++ +Q+ Sbjct: 300 KDILSLGTGSVVELNKMTDEPLEIYVNGKLIAEGEVVVINESFGIRITNILSKEQRI 356 >gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24] Length = 546 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|259416357|ref|ZP_05740277.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] gi|259347796|gb|EEW59573.1| surface presentation of antigens protein [Silicibacter sp. TrichCH4B] Length = 432 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 27/252 (10%), Positives = 76/252 (30%), Gaps = 27/252 (10%) Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE-----NLLGASH 116 + Q+ + + + V L++ +LG S Sbjct: 59 IAARQTNRVPEDLTGLLSDKHLLVVLDCPEGRIGAATLDAAAVTALIQQQTMGTVLGMSG 118 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + R+ + + + + ++ + + + + T L Sbjct: 119 D------ERNYTPTDAAMVAEFLEKLFGKVTNLLEDQSDLRIFEGYRFGAQVEDVRTLVL 172 Query: 177 SNEF----VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 E V +N+++ + L++P+ ++ ++ + + Sbjct: 173 GMEADDYRVINLNVDLATGKMQGEICLVLPEPSV-----------DEYDEANAVRGPRLG 221 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGR 291 + + + + L+ LK+G+++P L A NG+ I LG+ Sbjct: 222 SSVGSMRAELSAVLCKMRIPLRQFSALKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQ 281 Query: 292 VGKNYTIRITDR 303 + +R+ + Sbjct: 282 MNGARAVRLDQQ 293 >gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ3810] gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ3810] Length = 321 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGTQE 319 >gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15] Length = 546 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264] gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264] gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] Length = 546 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579] gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4] Length = 546 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus K5030] gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AN-5034] gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus Peru-466] gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ4037] gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus Peru-466] gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AN-5034] gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus AQ4037] gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio parahaemolyticus K5030] Length = 321 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGTQE 319 >gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134] gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134] Length = 545 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 426 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGVKVTKSL 545 >gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pakistani str. T13001] Length = 546 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGVKVTKSL 546 >gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] Length = 328 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V + Sbjct: 253 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 312 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 313 LGVRVLELFGGTQE 326 >gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria IOP40-10] Length = 309 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 T+ +S+ + ++Q ++D A + L V ++ ++ T+ DV L G V+P Sbjct: 210 MTMHEQASEMRGDSQ-PGMMDGQAFQVDALPVKLEFAFRQRELTVADVARLHPGAVLPLD 268 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + + ANG+ + EL +VG+ + I Sbjct: 269 AGAEHEVKIYANGRYLALGELIQVGERLAVEIQ 301 >gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1] gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1] Length = 287 Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 95/288 (32%), Gaps = 21/288 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ ++ + + +I + + S S Sbjct: 10 QEVVSTLEGLVGKASSVGLEKEVSNSE-EAWESLISAPYARVMVSAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214 L + K + + + M + +L Q Sbjct: 121 LNFTTTNAEIAKELPKKEDYTKAMVFSFKMEAIKESQIILLTTAAFECQFEKTHKEEKEE 180 Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 ++Q+ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 TTQSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200] Length = 545 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPIAEAKEM 426 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 486 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545 >gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str. Sheeba] gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 283 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 16/222 (7%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 LV TL + +LG + ++ N L K++A I+ L QE P L Sbjct: 67 GLVTTLSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 120 Query: 162 DFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLI----IPQETLLKTTLISLSS 216 + K + + + M + +L+ I Q K + Sbjct: 121 FTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLVTTDFINQFETKKEHNEEGTK 180 Query: 217 QNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + + ++ + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 VVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 240 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 241 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 281 >gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10] Length = 287 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 20/255 (7%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I + V S S LV L + +LG + ++ N L Sbjct: 40 GSLISAPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMT 189 K++A I+ L QE P L + K + + + + M Sbjct: 98 -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIAFSFKME 151 Query: 190 IENVASSFVLIIP------QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLN 239 + +L ++T + + S + ++ ++ + + Sbjct: 152 ALKESQIILLTTAAFEHQFEKTHQEEKEETTKSATEEVKTKDESLENIEIRNISMLLDVK 211 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+ Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271 Query: 300 ITDRINFDQKSLKNF 314 ITD I ++ L+ Sbjct: 272 ITD-IGTKKERLEQL 285 >gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 546 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas mendocina NK-01] Length = 279 Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 17/193 (8%) Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 L+ LE G + +P +ST E+++ R +S + + I Sbjct: 86 FAMDRPLLTEALECYYGGTC--LPNHEETPVSTSEQRMRTRLGLDVSQLFARSI--LAGQ 141 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216 + + YD Y + E+V N I +S + L T L+ + Sbjct: 142 TFGKLEPYDNTYDETTW-----EYVAQFNFTSHITGSQASIFI------YLDTQLVDELT 190 Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + QL V +D + + L V+ L+ G ++P E Sbjct: 191 SRLTPPAPAAQAGNSLNQIRQLPVRLDCVVASLQMPLSQVLALRPGDILPMRLLE--RCD 248 Query: 277 LSANGKEIYSCEL 289 + N ++++ + Sbjct: 249 VQINQQKLFRGAI 261 >gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2] gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2] Length = 352 Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 100/317 (31%), Gaps = 47/317 (14%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 +G + +DL V I+ KF I++ V + + Sbjct: 36 EVGNISMSQAATTLSSILDLRVSITTPRVSKIKFGEILNDLVAPKVATTVEFKEGLLGSN 95 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + I + + ++G + E N + +E + Q+ S + IS Sbjct: 96 LMLLEVKDAIVIADLMMGGTGE----PTNTQFTELELSAVAEAMNQMIGTASTSMATMIS 151 Query: 152 TTQESSPNL----EDFYDIDYLKKNTNR---------LSNEFVTTINMNMTIENVASSFV 198 + P + E +I+Y + + M + + V + Sbjct: 152 RKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDPVVNDIA 211 Query: 199 LII--------------PQETL-LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234 + PQ T + + +K S+ A Sbjct: 212 SAMLSDEATVVTRETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVNDGDNLD 271 Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + +++ + K T+KD+++ G VI + NGK I + E+ + Sbjct: 272 LILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVIN 331 Query: 294 KNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ Q+ Sbjct: 332 ENFGVRITNILSQKQRI 348 >gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex degensii KC4] Length = 360 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 94/315 (29%), Gaps = 35/315 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + E + V I+ Q ++ SF ++ Sbjct: 46 EIGNIAMGAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYTEGLEGLS 105 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + + ++G + P L +S V + + + + + L T Sbjct: 106 LLVVKVEDASVIADLMMGGEGKRSPTLGEIEISAVAEAMNQM-MGAAATSLADIYHRTVG 164 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLII------------ 201 +P + + + + + I+ MTIE++ ++ Sbjct: 165 IAPPQVRIFSKEGEAATNDLGVEDPIAVISFRMTIEDLLDTEIMRVLSVSTAKEEASLLW 224 Query: 202 ------------PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID------ 243 P + ++ + S P +L + +D Sbjct: 225 QGVYGEEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRLELILDIPLKVS 284 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + + +K+++ L G ++ + NG + E+ V +N+ +RIT Sbjct: 285 VVLGRTRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEENFGVRIT-S 343 Query: 304 INFDQKSLKNFLHKR 318 I Q+ L+ R Sbjct: 344 IVTPQERLRYLARPR 358 >gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271] Length = 548 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 254 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 312 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 313 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 369 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 370 EKMDMTPPDVKFVTLKEEMEYLGEAMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 429 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 430 VRRLLYPMVEAEEEIAEEEIEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 489 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 490 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 >gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 545 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 33/298 (11%), Positives = 99/298 (33%), Gaps = 34/298 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL---------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTRI 246 L + + + E E + P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEIVTEEIEEEKVVEPVAQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVF 487 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 GSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 545 >gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM 8271] Length = 373 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 106/329 (32%), Gaps = 59/329 (17%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 + + + + V+I+ ++ + + + + + + Sbjct: 45 EIANISMGTAATTLSQLVGRKVEITTPKVDITTPREVLDEYPVPYVLIAVSYKKGITGSN 104 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + S + +++ ++G S ++ + L+ ++ + Q+ +ST Sbjct: 105 MLILSRSDGSIIVDLMMGGSGQSPYE----ELTDLQVSGISEAMNQMMGSAATSMSTMFS 160 Query: 156 SSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVA-SSFVLIIPQETLLK 208 S+ ++ I + + NE V I+ M IE V S+ + +IP Sbjct: 161 STVDITPPNVIITKEGEEDAFLQTDIDPNEPVVKISFKMNIEGVLDSTLLQVIPLSVAKN 220 Query: 209 TTLISLSSQNKSENQSEDLIDPFARK---------------------------------- 234 T L++Q + ++ E + Sbjct: 221 MTERLLNNQPEPQSGPEARQEREYHSEPPLSPPPDIFWQQQSSMSSQSTPVQPAQFSQLV 280 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + + + + + T+KD++ L G V+ + NG Sbjct: 281 TGNHPAIPNNLDLIFDVPLQVSVELGKANKTIKDILELGPGSVVELDRIAGEPVDMIVNG 340 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310 K I CE+ + + + IRIT+ IN Q+ Sbjct: 341 KLIAKCEVVVINETFGIRITEIINQAQRM 369 >gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820] gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201] gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1] gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187] gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187] gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|145297435|ref|YP_001140276.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida subsp. salmonicida A449] gi|142850207|gb|ABO88528.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida subsp. salmonicida A449] Length = 236 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 23/216 (10%) Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS--LSTVEKKLAKRTIAQISA 144 SL + S +++ L G S + + S L+ E++L R Sbjct: 36 SLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGETASHSKGLTDTEQRLVLRLCQYQVD 95 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204 + + C+ + L + ++ +S ++ + + + L+ P E Sbjct: 96 IWSSCL-GLGDLEWQL------TLITRDVLPVSRLWMAAATLTVGSFSHGWQLWLVPPAE 148 Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 + +L + + + + TL D+ LK+G V Sbjct: 149 STGPAAGHALQDGT------------LEQALTHIPTRLRVVMGQLSMTLADLECLKVGDV 196 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + E + +S + + ++ Sbjct: 197 LSLDLPE--LVPALIGNRPCFSGRIAEHKGSLVYQV 230 >gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16] gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16] Length = 395 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 41/339 (12%), Positives = 113/339 (33%), Gaps = 59/339 (17%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86 ++ TI +I + L + +K+++ + ++ +S + N + Sbjct: 57 EQDTIGEIGNISFGSSATALSALLNQKVEITTPV-VSAVKSDMLRQLFPR--PNVIVHVK 113 Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAV 145 + + + + + + +LG + E P+L LS V++ + + + S Sbjct: 114 YTEGFEGSNLFVITTDDAAIIADLMLGGNGENPDPELSEMHLSAVQEAMNQM-MGSASTS 172 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLI-IP 202 ++ + + SP + + D + E + I+ ++ + ++ + LI +P Sbjct: 173 MSTLFNRRVDISPPKVEVIEFDEQSRTEYVSDGEDLIAISFSLRVGDLIDSKLMQLISVP 232 Query: 203 QE-----TLL---------------KTTLISLSSQNKSENQSEDLIDPFARKTYQLN--- 239 LL +E + ++ Sbjct: 233 FSKDYANALLGGGATAEPPVQEAEPLPEPAPAIGGLGDGTSAERVNQHIGQRVKDAEQVV 292 Query: 240 --------------------------VNIDTRINLKKT--TLKDVVTLKIGQVIPFLHRE 271 + ++ ++ L +T T+++++++ G +I Sbjct: 293 EKAVFSNFETTKPDEAEMQNLDMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLA 352 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K I E+ + +N+ +RITD ++ + Sbjct: 353 GEPVDVLINDKLIAKGEVVVIDENFGVRITDIVSKKDRL 391 >gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97] Length = 546 Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293] Length = 546 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 4222] Length = 544 Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 33/298 (11%), Positives = 101/298 (33%), Gaps = 34/298 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPIYEAKEM 426 Query: 210 TLISL---------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTRI 246 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVF 486 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 GSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 544 >gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603] Length = 548 Score = 52.3 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 98/300 (32%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 253 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-EGVPVPFVILNVDFVEGLKNEN 311 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ ++ + + I N+ I ++ S I+P + Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGESMAVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 428 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244 L + E ++ P K + + +N+ Sbjct: 429 VRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQPIEYKEVKQVEPVYMDASILQNVEMNVKF 488 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 >gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis KBAB4] gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621] Length = 548 Score = 52.3 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 98/300 (32%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 253 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-EGVPVPFVILNVDFVEGLKNEN 311 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET---- 205 + +P F + + ++ ++ + + I N+ I ++ S I+P Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGESMAVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 428 Query: 206 ---LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV------------------NIDT 244 LL + + + E++ P + V N+ Sbjct: 429 VRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKF 488 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 >gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP] Length = 366 Score = 52.3 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 56/313 (17%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLL 112 + VDIS + + V + L L + ++ Sbjct: 52 LGRKVDISTPEVEVMTLRELRKGISGEKVCVTIHFEGEVEGLNALVLEKQLAAELADIMM 111 Query: 113 GASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 G +L LS V + + + + + L+ I +P + + D Sbjct: 112 GGLGKPESDELDEFKLSAVGEAMNQM-MGSAATSLSDMIKKPVSITPPTTEILNFDDESV 170 Query: 172 NTNRLSNE--FVTTINMNMTIENVA-SSFVLIIP-------------------------- 202 + +E V MTIE + + F L +P Sbjct: 171 KFPPIGDENDKVAKATFTMTIEGLQPAKFFLAMPISFVKKLYELIFGTPTVEQKQASAPA 230 Query: 203 ------------------------QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 Q + + + ++ ++D + + + Sbjct: 231 PGTDQTSASKPTSFVPPTPKREEKQAVAARPVQFEDFGRTQQPSEKPQILDERLQLLFDV 290 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ + K LK+++ L +G +I + N K I E+ + +N+ + Sbjct: 291 PLNVTVELGRTKLALKEIMELGVGSLIELDKLTGEPVDIYVNNKLIARGEVVVIDENFGV 350 Query: 299 RITDRINFDQKSL 311 RIT+ +N ++ Sbjct: 351 RITEIVNPKERLY 363 >gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 544 Score = 52.3 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 33/298 (11%), Positives = 101/298 (33%), Gaps = 34/298 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 251 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 309 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 310 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 366 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 367 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPIYEAKEM 426 Query: 210 TLISL---------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTRI 246 L + + + E E ++ P ++ Q+ +N+ Sbjct: 427 VRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFVF 486 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 487 GSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 544 >gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241] gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241] Length = 546 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 99/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDTR 245 L + + E E ++ P K + + +N+ Sbjct: 428 VRRLLYPMVEAEEEITEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 318 Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 24 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 82 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 83 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 139 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 140 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 199 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 200 VRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 259 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 260 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 318 >gi|119384526|ref|YP_915582.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] gi|119374293|gb|ABL69886.1| surface presentation of antigens (SPOA) protein [Paracoccus denitrificans PD1222] Length = 392 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 76/261 (29%), Gaps = 17/261 (6%) Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114 L V + + + E + + + + +L+ L+E Sbjct: 74 GLPVFVEKVERAGMVLAELPELLPERALLAVVGGRR-DALGVVAICPDLLAALIEMQAIG 132 Query: 115 SHETIPQLYNRSL---STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 + P R + + +A++ +C + + + Sbjct: 133 RVTSRPAPPRRPTRTDAAISADFVNALLAELG---RECAARDGCPDFGAYRYATFMDDPR 189 Query: 172 NTNRL-SNEFVTTINMNMTIENVA---SSFVLIIPQETLLKTTLISLSSQNKSE-----N 222 + L + +T ++ I ++ +P + + N+S + Sbjct: 190 PLSLLLEDGEMTRLDFRFRIGTGGQRDGRLMIALPARVGAPPDAVPAIAGNQSRLPVAPS 249 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NG 281 + A + + + + ++ +L + L G ++P A L G Sbjct: 250 ADPPVAPSLAEAVQEAPIRLAGILCRRRLSLHQLRGLATGSLLPLPQNVLDEARLETPQG 309 Query: 282 KEIYSCELGRVGKNYTIRITD 302 + + LG + IR+ D Sbjct: 310 QLLARGRLGEKDGFHAIRLRD 330 >gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550] Length = 546 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 101/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + L+ +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGEVDP---EKELTELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VKRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942] gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942] Length = 379 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 45/366 (12%), Positives = 118/366 (32%), Gaps = 70/366 (19%) Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISS-SLGYLYKKFLPKIFKEKMDLDVDISYT 63 S + +P P L D +E+ + +G + ++ VDI+ Sbjct: 20 STSEEPAPAKPEL---------DLSEMERDAIGEIGNISFGSSATALSTLLNQKVDITTP 70 Query: 64 SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET-IPQ 121 S S I F +S + + + + + ++G + P Sbjct: 71 SVTVISKSKISDEFPHPYVAIEVNYTEGFSGSNLLVVEQSDAAIIADLMIGGDGKGADPS 130 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 L LS V++ + + + + ++ S + SP + D++ K ++E + Sbjct: 131 LGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKIDISPPRVELLDVNEEKGTDRIPADEML 189 Query: 182 TTINMNMTIENV--ASSFVL--------------------------------------II 201 ++ + + + ++ L ++ Sbjct: 190 VKVSFRLKVGELIDSNIMQLYPITFAKDLISDLMNTGSSNEDIQQEEPEETYEAPEEAVM 249 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDP---------------FARKTYQLNVNIDTRI 246 P+ L + Q K + + + P +++ + + Sbjct: 250 PEPRLESQPQPTPKRQGKPKKAAPVQVAPVEFSAFDPNEAPQAHLNNLDMLMDIPLSITV 309 Query: 247 NLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L +T ++K+++ L G +I + N + + E+ + +N+ +R+TD + Sbjct: 310 ELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDIL 369 Query: 305 NFDQKS 310 + ++ Sbjct: 370 SQAERI 375 >gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus ATCC 12755] Length = 352 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 47/317 (14%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 +G + +D V I+ KF I++ V + + Sbjct: 36 EVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTVEFKEGLLGSN 95 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + I + + ++G + ET + +E + Q+ S + IS Sbjct: 96 LMLLEVKDAIVIADLMMGGTGETSNT----QFTELELSAVAEAMNQMIGTASTSMATMIS 151 Query: 152 TTQESSPNL----EDFYDIDYLKKNTNR---------LSNEFVTTINMNMTIENVASSFV 198 + P + E +I+Y + + M + + V + Sbjct: 152 RKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIKSKIMQIFTDPVVNDIA 211 Query: 199 LII--------------PQETL-LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234 + PQ T + ++ +K S+ A Sbjct: 212 SAMLSDEATVVTRETPTPQPTAPVAAPTPEPAATSKPVEVSKPAFQTLASSGVSDGDNLD 271 Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + +++ + K T+KD+++ G VI + NGK I + E+ + Sbjct: 272 LILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVIN 331 Query: 294 KNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ Q+ Sbjct: 332 ENFGVRITNILSQKQRI 348 >gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp. Ex25] gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25] gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp. Ex25] gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25] Length = 322 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V ++ Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEH 306 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 307 LGVRVLELFGGTQE 320 >gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L] gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation [Bacillus anthracis str. A2012] gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str. Sterne] gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L] gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis Tsiankovskii-I] gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W] gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str. CDC 684] gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str. A0248] Length = 546 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA] Length = 370 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 108/332 (32%), Gaps = 62/332 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + + ++ V+I+ + I F+ N + +S + Sbjct: 39 EIGNISMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSGITGRN 98 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + ++G + LS +E + + Q+ ++T Sbjct: 99 ILIMQTTDAAVIANLMMGGDGQVNTS----ELSEIEVSAVQEAMNQMIGSAATSMATMFA 154 Query: 156 SSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 N+ + N N +E + + ++TIE + S+ + I+P T K Sbjct: 155 REVNISPPKSKIWKDMNENISETIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKIV 214 Query: 211 LISLSSQNKSENQSEDLID--------------PFARKTYQ------------------- 237 I + + N+ +D D P + Sbjct: 215 SIMMGEDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATFE 274 Query: 238 -----------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILS 278 L+V ++ + L +T ++KD++ L G +I + + Sbjct: 275 PLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEVL 334 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK+I E+ V +N+ +RIT ++ + Sbjct: 335 INGKKIAYGEVVVVDENFGVRITSIVSGADRI 366 >gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus] Length = 322 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V ++ Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEH 306 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 307 LGVRVLELFGGTQE 320 >gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01] gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01] Length = 322 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V ++ Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNEH 306 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 307 LGVRVLELFGGTQE 320 >gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 546 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57] Length = 287 Score = 52.0 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 83/253 (32%), Gaps = 20/253 (7%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + S S LV L + +LG + ++ + L K Sbjct: 42 LISVPYARVMISAIEKEESSIELLAPVD--LVTALSDLMLGGEGASKEEMDDDDLDAF-K 98 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIE 191 ++A I+ L QE P L + K + + + + M Sbjct: 99 EMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKMEAL 153 Query: 192 NVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLNVN 241 + +L + KT KS + D + +N Sbjct: 154 KESQIILLTTAAFERQFEKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVKLN 213 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + RI KK LKDVV++ IG V+ + + K I E+ V N+ I+IT Sbjct: 214 VKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT 273 Query: 302 DRINFDQKSLKNF 314 D I ++ L+ Sbjct: 274 D-IGTKKERLEQL 285 >gi|163736146|ref|ZP_02143565.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] gi|161390016|gb|EDQ14366.1| surface presentation of antigens (SPOA) protein [Phaeobacter gallaeciensis BS107] Length = 460 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 37/293 (12%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKEN 80 G L T++ + S+ D+ ++ + + + + Sbjct: 29 GGLTSSLTLKALRRSIARAAADL----------CDLPVAVLAARQANRIPEDLPPHLSDK 78 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK---- 136 + + V L++ R+ + + + Sbjct: 79 HLLVVLDGPN-GRIGAATLDAPTVTALIQQQTMGQ-VLGKAPSERNYTPTDAAMVADFLE 136 Query: 137 ----RTIAQISAVLNQCISTTQESSPNLEDFYDID-YLKKNTNRLSNEFVTTINMNMTIE 191 + ++ ++ ++ I + +ED + L+ R V + +++ Sbjct: 137 RTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYR-----VIELTLDLACG 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + LI+P + + L ++ +Q+ + + + K Sbjct: 192 AMQGGLTLILP-----EPSPEDLGEAGQNAHQAGP---SLGSNMGSMRAELRAVLCRMKV 243 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIRITDR 303 + L+ G ++P + S +G+ I LG++ +R+TD Sbjct: 244 PANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTDP 296 >gi|163741324|ref|ZP_02148716.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10] gi|161385677|gb|EDQ10054.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10] Length = 460 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 37/293 (12%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKEN 80 G L T++ + S+ D+ ++ + + + + Sbjct: 29 GGLTSSLTLKALRRSIARAAADL----------CDLPVAVLAARQANRIPEDLPPHLSDK 78 Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK---- 136 + + V L++ R+ + + + Sbjct: 79 HLLVVLDGPN-GRIGAATLDAPTVTALIQQQTMGQ-VLGKAPSERNYTPTDAAMVADFLE 136 Query: 137 ----RTIAQISAVLNQCISTTQESSPNLEDFYDID-YLKKNTNRLSNEFVTTINMNMTIE 191 + ++ ++ ++ I + +ED + L+ R V + +++ Sbjct: 137 RTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYR-----VIELTLDLACG 191 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 + LI+P + + L ++ +Q+ + + + K Sbjct: 192 AMQGGLTLILP-----EPSPEDLGEAGQNAHQAGP---SLGSNMGSMRAELRAVLCRMKV 243 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNYTIRITDR 303 + L+ G ++P + S +G+ I LG++ +R+TD Sbjct: 244 PANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTDP 296 >gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund 17B] gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 42/338 (12%), Positives = 106/338 (31%), Gaps = 67/338 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + + ++ +V+I+ + SF+ N + Sbjct: 47 EIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIILDVEYTEGIIGRN 106 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + LS +E + + Q+ + + S Sbjct: 107 ILVMRTDDAAVIANLMMGGDGKVPENPE---LSEIEVSAVQEAMNQMIGSAATSMATMFS 163 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET----- 205 + SP + +E + ++ + I ++ S+ + I+P T Sbjct: 164 RRVDISPPTSKLWKEKDEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKKIV 223 Query: 206 -------------LLKTTLISLSSQNKSENQSEDLIDPFARKTY---------------- 236 + ++ + ++ NQ ++ + Sbjct: 224 SIMMGEEDASTEAIESAKVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPIEV 283 Query: 237 ----------------------QLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREK 272 L+V +D + L +T ++KD++ L G +I + Sbjct: 284 HEAAFETLVPGDTSQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAE 343 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK+I E+ V +N+ +RIT ++ ++ Sbjct: 344 EPVEILVNGKKIAYGEVVVVDENFGVRITSIVSNAERI 381 >gi|34498456|ref|NP_902671.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472] gi|34104311|gb|AAQ60670.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472] Length = 280 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 34/201 (16%) Query: 99 CSNNLVITLLENLLGA-----SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 L++ +L+ GA E + + E++L + ++ L + I Sbjct: 88 FDRGLLLGILDYRFGARAGASDGELPAE------TETERRLGRTLAERLLPRLARAIHQL 141 Query: 154 QESS-PNLEDFYDIDYLKKNT----NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 +S P+ + Y + LS+ + + + A Sbjct: 142 SRASLPDASRPQPLGYPDQAAWQLEVDLSDGDAKLGTLRLRLNAAAFD------------ 189 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 L+ S + FA + + +D R+ ++ L V+ L+ G V+P Sbjct: 190 -ALLQNLSGQRPRLLGNPDSANFAERVR---IRLDARLLEQELPLGAVLDLRPGSVLPVA 245 Query: 269 HREKTCAILSANGKEIYSCEL 289 + A + A G ++ ++ Sbjct: 246 MQPH--AEVCAQGSPLFRAQV 264 >gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51] Length = 287 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 22/258 (8%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I V S S LV L + +LG + ++ N L Sbjct: 40 GSLISVPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 K++A I+ L QE P L + K + + + I + + Sbjct: 98 -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKED-YAKMIVFSFKM 150 Query: 191 ENVASSFVLIIPQETLL----KTTLISLSSQNKSENQSEDLIDPFARKTY--------QL 238 E + S ++++ KT + KS + D + Sbjct: 151 EALKESQIILLTTAAFEHQFEKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDV 210 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I Sbjct: 211 KLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGI 270 Query: 299 RITDRINFDQKSLKNFLH 316 +ITD I ++ L+ H Sbjct: 271 QITD-IGTKKERLEQLKH 287 >gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908] gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 285 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 20/225 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV L + +LG + ++ N L K++A I+ L QE P L Sbjct: 67 DLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 120 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP-----QETLLKTTLISLS 215 + K+ + + + + + +E + S VL+I Q + Sbjct: 121 FTTTNAEIAKDLPKKED-YAKAVVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEET 179 Query: 216 SQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 +++ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 180 TKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 283 >gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella australiensis 50-1 BON] gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella australiensis 50-1 BON] Length = 366 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 95/322 (29%), Gaps = 53/322 (16%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + + V I+ + + + FV + Sbjct: 39 EIGNISMGTAATTLSTLLRNKVVITTPRVDITTMNELGKEYPIPFVAVEVKYTQGLEGVN 98 Query: 96 FIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + V + + ++G I ++ + LS + + + + + L+ Sbjct: 99 LLILKEEDVKLITDLMMGGDGSNIADEISDLHLSAIGEAMNQMV-GSSATSLSTMFDKNI 157 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLIS 213 SP + SNE + I +M I + S + ++P + + Sbjct: 158 NISPPKAFVINFTDESPYDAFDSNEPLVRIAFSMEIGTLLKSEMMQLLPIDFAKELVNNL 217 Query: 214 LSSQNKSEN---------QSEDLIDPFARKTYQ--------------------------- 237 L K+ + I+ + Q Sbjct: 218 LGGAAKAPDNEPLQKQEVTQMPPIESEKPEIKQAVVNKTESEKVVKAQPVVFQQLNNEAP 277 Query: 238 -----------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 +++ + + L +T T+KD++ L G VI + NGK + Sbjct: 278 EVLQGSNMNLIMDIPLQVTVELGRTKKTVKDILELGTGSVIELDRLAGEPIDILVNGKLV 337 Query: 285 YSCELGRVGKNYTIRITDRINF 306 E+ + +N+ +RI + I+ Sbjct: 338 ARGEVIVIDENFGVRIIEMIDQ 359 >gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342] Length = 547 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMKVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMMEEEEEIITEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT 98-5491] gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491] Length = 285 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 97/252 (38%), Gaps = 15/252 (5%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + + + + S + L + +LG T + + L K++ Sbjct: 38 SALQAPMARVDIEADN-GAKLAFFISPKVATALADMMLGGEGSTKETMDDDDLDAT-KEI 95 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV 193 +S L + S +L+D + I + T+R +N + + N+ +++ Sbjct: 96 VSNIFGAVSTSL-GAQKELPKLSFSLKDIHFISETADLETDRFTNFYTFSFNLGTIQDSL 154 Query: 194 ----ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNID 243 + F + QET +T S+ + N +N + +L + + + + + Sbjct: 155 FLAFSEEFENLFKENSQETNQETPQPSIQNTNHQDNAALELNNAEMKNMAMLLDVRLQVK 214 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 RI KK LKDV+ + IG V+ + + K I E+ V N+ I+IT+ Sbjct: 215 VRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVDGNFGIQITE- 273 Query: 304 INFDQKSLKNFL 315 I + ++ + Sbjct: 274 IAPKKDRIEQLM 285 >gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. fetus 82-40] gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] Length = 276 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 8/243 (3%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL-ENLLGASHETIPQLYNRSLSTVEKK 133 + + V + ++S + I + L+IT + + +LG N ++ E Sbjct: 38 NGIQTPIVVANINVSGDINGKIIFIATPLLITAINDLMLG----EEEPTKNLNIGDDELD 93 Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 +K + I + ++ ++ ++ + + YL +N + + +T+ ++ Sbjct: 94 ASKEIFSNILSAISTSLTAAKDMPKLSFEIQKVVYLDENQILDLSSYEKLFLCPVTMGDI 153 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKT 251 L+I + + D+ + + + I RI KK Sbjct: 154 NEHIGLVIDFAFNKYFNKSDEKHTKEIPHLKADITEEIKNIGLIMDVRLPIRVRIGSKKM 213 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 LKDV+++ IG VI + K++ E+ V N+ ++IT+ I ++ L Sbjct: 214 LLKDVLSMDIGSVIELNQLANDPLEVLIGDKQVALGEVVIVDGNFGVQITE-IGTKKERL 272 Query: 312 KNF 314 + Sbjct: 273 EQL 275 >gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori HPKX_438_CA4C1] Length = 125 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 2/124 (1%) Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237 NE + + + I + + P ++ S + + Sbjct: 2 NEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALL 61 Query: 238 LNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 V++D + L + +LK+++ L +G I + + K+ Y +G G Sbjct: 62 SGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYR 121 Query: 296 YTIR 299 TI+ Sbjct: 122 KTIQ 125 >gi|74101638|gb|AAZ99728.1| FliML [Aeromonas hydrophila] Length = 291 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 63/213 (29%), Gaps = 23/213 (10%) Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQL--YNRSLSTVEKKLAKRTIAQISAVLN 147 + S +++ L G S + +++ L+ E++L R + + Sbjct: 94 DTQRVVYFSISPSVIYRLAVLFFGGSLRNQEETVSHSKGLTDTEQRLVLRLCQYQVDIWS 153 Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207 C+ + L + +S ++ + + + L+ P Sbjct: 154 SCL-GLGDLEWQLTLITC------DALPVSRLWMAAATLTVGSFSHGWQLWLVPP----- 201 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 Q L A +L V + TL D+ LK+G V+ Sbjct: 202 ---AERTGPAVGHTLQDGALEQALAHIPARLRV----VMGQLSMTLADLECLKVGDVLSL 254 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 E A+ + +S + + ++ Sbjct: 255 DLPEVVPAL--IGNRPCFSGRIAEHKGSLVYQV 285 >gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 547 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMKVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMMEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI] gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus NVH0597-99] gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 546 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 100/299 (33%), Gaps = 35/299 (11%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPITEAKEM 427 Query: 210 TLISL----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDTR 245 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKFV 487 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 FGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 546 >gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92] gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein [Campylobacter curvus 525.92] Length = 286 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 21/265 (7%) Query: 66 QSGKFSHI----IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIP 120 + G+ + + K V + LS ++ I C+ LV + E ++G Sbjct: 26 EVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVCTPVLVSAISEWMMG----EEE 81 Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180 N +L E AK + + + + + + + ++++L +N+ + + Sbjct: 82 ISRNEALGADELDAAKEIFSNLLSAFSTSLGAQKGMPKISFEIVNVNFLDENSALDFSVY 141 Query: 181 VTTINMNMTIENVASSFVLIIPQETLL-----KTTLISLSSQNKSENQSEDLIDPFARK- 234 ++ IE++ + + K S ++++ + A + Sbjct: 142 EKLFLFSVKIEDINEHIGFVCDHTLMKFFEPTKVGESESQSGDQAKATHGSRSEFSAEEM 201 Query: 235 -----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + I RI K+ LKDV+++ IG VI + K I E+ Sbjct: 202 RNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVIELNQLANDPLEILIGDKVIALGEV 261 Query: 290 GRVGKNYTIRITDRINFDQKSLKNF 314 + N+ I+IT +I ++ L+ Sbjct: 262 VIIDGNFGIQIT-QIGSKRERLQQL 285 >gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99] gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] Length = 285 Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 20/225 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV L + +LG + ++ N L K++A I+ L QE P L Sbjct: 67 DLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 120 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP-----QETLLKTTLISLS 215 + K + + + + + +E + S VL+I Q + Sbjct: 121 FTTTNAEIAKELPKKED-YAKAMVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEET 179 Query: 216 SQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 +++ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 180 TKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 283 >gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16] Length = 287 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 85/255 (33%), Gaps = 20/255 (7%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + V S S LV L + +LG + ++ N L K Sbjct: 42 LISTPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF-K 98 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIE 191 ++A I+ L QE P + K + + + + M Sbjct: 99 EMASNIFGAIATSLKS-----QELLPKFNFTTINAEIAKELPKKEDYAKMIVFSFKMEAL 153 Query: 192 NVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLNVN 241 + +L + KT + KS + D + +N Sbjct: 154 KESQIILLTTAAFERQFEKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVKLN 213 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + RI KK LKDVV++ IG V+ + + K I E+ V N+ I+IT Sbjct: 214 VKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQIT 273 Query: 302 DRINFDQKSLKNFLH 316 D I ++ L+ H Sbjct: 274 D-IGTKKERLEQLKH 287 >gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128] gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8] Length = 287 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 97/287 (33%), Gaps = 23/287 (8%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ +S F +I + S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISTPYARVKISAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL----LKTTLISLS 215 L + K + + + + + +E + S ++++ E KT Sbjct: 121 LNFTTTNAEIAKELPKKED-YAKAMVFSFKMEAIKESQIILLTTEAFEDQFKKTHQEEKE 179 Query: 216 SQNKSENQSEDLIDPFARKTY--------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 KS + D + +N+ RI KK LKDVV++ IG V+ Sbjct: 180 EATKSTIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVEL 239 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 240 DQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285 >gi|167568051|ref|ZP_02360967.1| translocation protein in type III secretion [Burkholderia oklahomensis EO147] Length = 349 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 3/95 (3%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 ++L + + + P +V + ++ L + +L+ G V+ + Sbjct: 258 VALDTPDAPDAPDSPDAGPLR---LDAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQP 314 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L GK L VG +RI + Sbjct: 315 DGLVTLQVAGKPFARGTLLDVGGRLAVRIEHLLPA 349 >gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B] gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B] Length = 322 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + I + TL+ + L+ G V L ANGK I CEL V ++ Sbjct: 247 QQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTLRANGKIIGECELVNVNEH 306 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 307 LGVRVVELFGGTQE 320 >gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108] Length = 547 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPITEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879] gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879] Length = 283 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 107/282 (37%), Gaps = 12/282 (4%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 L+ + + M +++T + ++ + V + + +S S Sbjct: 8 DFIELFIQEMVATIDGMMGRTAVVTHTG-DTEVSDSLLGTPFGKVVVNVSLGASQVSTLC 66 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 NL L + ++G +T + + +K K I+ L + ++ Sbjct: 67 FIMPENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGGHEKL 122 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-TTLISLS 215 D+ ++ LS+ F T ++ I++V S +++ + L + Sbjct: 123 PHFSFAIADVSNVESE-GSLSD-FDTASRFDVGIDSVKSELIMLTKNDLLTHVPKDLKAP 180 Query: 216 SQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + S N+ L D R + +++ RI K+ LKDV+++ IG V+ Sbjct: 181 ASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLAS 240 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + N K I E+ V N+ I+IT+ I ++ L++ Sbjct: 241 DPLEILVNDKIIGKGEVVVVDGNFAIQITE-IGTKKERLESL 281 >gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180] Length = 287 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 18/224 (8%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161 +LV L + +LG + ++ N L K++A I+ L QE P L Sbjct: 69 DLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKLN 122 Query: 162 DFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIP----QETLLKTTLISLSS 216 + K + + + M + +L Q ++ Sbjct: 123 FTTTNAEIAKEIPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKNHKEEKEEAT 182 Query: 217 QNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 ++ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 183 KSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285 >gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam] gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102] gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1] Length = 547 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 100/300 (33%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 252 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-DGVPVPFVILNVDFVEGLKNEN 310 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E + LS +E + + + + +++ Sbjct: 311 VFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAATAMSEMFQ 367 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+P + Sbjct: 368 EKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPITEAKEM 427 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFA-RKTYQLN-------------VNIDT 244 L + + + E E ++ P ++ Q+ +N+ Sbjct: 428 VRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMNVKF 487 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 488 VFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVTKSL 547 >gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27] gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27] Length = 287 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 21/288 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ ++ + F +I + S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESFLKLISAPYARVKISAIEKEESLIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214 L + K + + + M + +L Q Sbjct: 121 LNFTTTNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKTHKEEKEE 180 Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 ++Q+ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 TTQSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|163800130|ref|ZP_02194031.1| putative flagellar motor switch protein [Vibrio sp. AND4] gi|159175573|gb|EDP60367.1| putative flagellar motor switch protein [Vibrio sp. AND4] Length = 272 Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 12/146 (8%) Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226 D + +++ E + S L + T+++T + L+ N+ + Sbjct: 139 DMWQTCEYEAPRGIGLHTEISIAFEGLQGSIHLKL-DSTMIQTLIEQLALHNE-----TN 192 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 L PF R V ++ ++ K L DVV L+ ++P +S + ++S Sbjct: 193 LYQPFCRSLESTPVRLNVVLSKKTMALSDVVELQPDDILPIEL--LNTVPVSIGNQTLFS 250 Query: 287 CELGRVGKNYTIRITDRINFDQKSLK 312 + + N D++S + Sbjct: 251 GRVAEQDGQLVL----IFNPDKESQR 272 >gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas mendocina ymp] Length = 321 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 17/201 (8%) Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 S L+ LE G + +P +ST E+++ R +S + + Sbjct: 120 RSTLGKVGFAIDRALLTEALECYYGGTC--LPNHEAPPVSTSEQRMRTRLGLDVSQLFAR 177 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 I + + YD Y + E+V + I +S + L Sbjct: 178 SI--LAGQTFGKLEPYDNAYEEATW-----EYVAEFHFTSHITGSQASIFI------YLD 224 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 T L+ + + + QL V +D + + L V+ L+ G ++P Sbjct: 225 TQLVDELTNRLTPPAPVAQSGNSLNQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMR 284 Query: 269 HREKTCAILSANGKEIYSCEL 289 E + N ++++ + Sbjct: 285 LLE--RCDVQINQQKLFRGAI 303 >gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 321 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + TL+ + +L+ G + + ANGK I CEL + + Sbjct: 246 QQLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMRANGKIIGECELVNINER 305 Query: 296 YTIRITDRINFDQK 309 +R+ + + Q+ Sbjct: 306 LGVRVIELLGETQE 319 >gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30] gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10] gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20] Length = 352 Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 98/317 (30%), Gaps = 47/317 (14%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 +G + +D V I+ KF I++ V + + Sbjct: 36 EVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTVEFKEGLLGSN 95 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + I + + ++G + ET + +E + Q+ S + IS Sbjct: 96 LMLLEVKDAIVIADLMMGGTGETSNT----QFTELELSAVAEAMNQMIGTASTSMATMIS 151 Query: 152 TTQESSPNL----EDFYDIDYLKKNTNR---------LSNEFVTTINMNMTIENVASSFV 198 + P + E +I+Y + + M + + V + Sbjct: 152 RKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDPVVNDIA 211 Query: 199 LII--------------PQETLLKTTLISLSSQ-NKSENQSEDLIDPFARK--------- 234 + PQ T + +K S+ A Sbjct: 212 SAMLSDEATVVTRETPTPQPTAPVAAPTPEPAAASKPVEVSKPAFQTLASSGVSDGDNLD 271 Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + +++ + K T+KD+++ G VI + NGK I + E+ + Sbjct: 272 LILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATGEVVVIN 331 Query: 294 KNYTIRITDRINFDQKS 310 +N+ +RIT+ ++ Q+ Sbjct: 332 ENFGVRITNILSQKQRI 348 >gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196] Length = 548 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 98/300 (32%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H FV + Sbjct: 253 EIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHY-EGVPVPFVILNVDFVEGLKNEN 311 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQET---- 205 + +P F + + ++ ++ + + I N+ I ++ S I+P Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGESMAVDELVQITFNLEIGDLLQSKMYQILPISEAKEM 428 Query: 206 ---LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV------------------NIDT 244 LL + + + E++ P + V N+ Sbjct: 429 VRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQPIEYKEVKQVEPVYMDTSILQNVEMNVKF 488 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKMTKSL 548 >gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM 16994] gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM 16994] Length = 288 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 89/282 (31%), Gaps = 25/282 (8%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S ++ + I+ + I + + + + Sbjct: 2 SDFPGVFATEAVATIEGLTGQTPTITLKEAEEISI--ISNVIPPIAQIHVSFSGAAAGRG 59 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + L L + +LG E ++S + AK ++ I ++ +++ +E Sbjct: 60 IVMMPPQLATALGDMMLGGDGEAQD-----TMSDEDMDAAKEIVSNIVGAMSTTLASQKE 114 Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT------ 209 +++ ++ + + + ++ S +L I T+ + Sbjct: 115 LPKFTIKPERAEFIPESGEVNLDGYAKMFVFTFALGHINSLMMLAI-DSTINEALTGEKA 173 Query: 210 ----------TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + SS + E + + + + RI KK LKDV+++ Sbjct: 174 APAPASNSSNIFDAPSSSVPAVKLDEGEMKNIGL-IMGVKLPVRVRIGKKKMLLKDVLSM 232 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 IG VI + + I E+ V N+ ++IT Sbjct: 233 DIGSVIELNQLANDPLDILVDDHVIAQGEVVIVDGNFGVQIT 274 >gi|254485678|ref|ZP_05098883.1| Surface presentation of antigens protein [Roseobacter sp. GAI101] gi|214042547|gb|EEB83185.1| Surface presentation of antigens protein [Roseobacter sp. GAI101] Length = 413 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 78/240 (32%), Gaps = 16/240 (6%) Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137 EN + I LV L++ P + R ++ + LA Sbjct: 68 DENLLILMDGPRGLCGAVMI--DPALVGGLIQQQTMGKVLDAPAGFVRPMTGTDAALAAP 125 Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIE 191 I + + + T ++ + + Y N L + + ++M Sbjct: 126 LIDALLERAAKLVETDEDRA--VLTGYRFGAKSHNVRLLMLSLDAPEFHIIRMTVDMAQG 183 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLK 249 VL +P + ++ + + + + D + P + QL + + Sbjct: 184 ARQGELVLCLP---VPPRHAVAAPTSPDAGSAAADPVAPRTLSASVLQLKAELMVSLAQV 240 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITDRINFDQ 308 +++D L +GQV+P A + +G+ + LG+ +R+ R+ Sbjct: 241 TMSIRDAGGLHVGQVLPLGSVSFDAAQVRTKDGRILGVGSLGQSDGMRAMRLKHRVKTRD 300 >gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 366 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%) Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 +D+ + V I R+ T+ +++ L G VI + NGK Sbjct: 275 ADQDMDGHNFDLIVDVPVRITVRLGQAAKTIGEILNLTPGSVIELDKMAGDPVDILVNGK 334 Query: 283 EIYSCELGRVGKNYTIRITDRINFDQKS 310 I E+ + +N+ +RIT+ +N + Sbjct: 335 LIARGEVVVIDENFGVRITEIVNRSDRI 362 >gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695] gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695] Length = 287 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 94/288 (32%), Gaps = 21/288 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ +S F +I + V S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISTPYARVVISAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV +L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 --VLVTSLSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214 L + K + + + M + +L Q Sbjct: 121 LNFTTINAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEE 180 Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 +++ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 TTEGVAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str. Alaska E43] gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str. Alaska E43] gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 383 Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 105/336 (31%), Gaps = 65/336 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + + ++ +V+I+ + SF+ N V Sbjct: 47 EIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIVLDVEYTEGIIGRN 106 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + LS +E + + Q+ + + S Sbjct: 107 ILVMKTDDAAVIANLMMGGDGQVSENPE---LSEIEVSAVQEAMNQMIGSAATSMATMFS 163 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 + SP + +E + ++ + I ++ S+ + I+P T K Sbjct: 164 RRVDISPPTSKLWKEKSEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKKIV 223 Query: 211 LISLSSQNKSE---------------NQSEDLIDPFARKTYQL----------------- 238 I + + S + + R++ Q Sbjct: 224 SIMMGEEESSSVATDPKKVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEVHE 283 Query: 239 ----------------------NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTC 274 +V +D + L +T ++KD++ L G +I + Sbjct: 284 AAFETLVPGDTAQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAEEP 343 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK+I E+ V +N+ +RIT ++ ++ Sbjct: 344 VEILVNGKKIAYGEVVVVDENFGVRITSIVSNAERI 379 >gi|254477766|ref|ZP_05091152.1| Surface presentation of antigens protein [Ruegeria sp. R11] gi|214032009|gb|EEB72844.1| Surface presentation of antigens protein [Ruegeria sp. R11] Length = 448 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 37/291 (12%), Positives = 85/291 (29%), Gaps = 34/291 (11%) Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82 G L T++ + S+ DL V + + Q+ + + + + Sbjct: 29 GALTSSLTLKALRRSIARAAADL--------CDLPVAV-LAARQANRVPEDLAAHLSDKH 79 Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK----RT 138 LV L++ R + + + RT Sbjct: 80 LLVVLDGPAGRIGAATLDAPLVTALIQQQTMGQ-VLGKAPSERHYTPTDAAMVADFLERT 138 Query: 139 IAQISAVL-----NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 ++ ++L S + + + L+ RL + V ++ + Sbjct: 139 FGKVVSMLSGQKDEVIFSGYRFGAQVENVRSLVLGLEAEDYRLIDLTV-----DLACGAM 193 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + LI+P + T L N S++ + + + + Sbjct: 194 QGNMTLILP-----EPTAEDLGKANGSQHAGP----SLGSNLGAMRAELQAVLCKMRVPA 244 Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITDR 303 +L G ++P ++ +G+ I LG++ +R+TD Sbjct: 245 NAFTSLAKGDLLPLDQAYLYETEMVAISGQVIAQGRLGQMNGARAVRLTDP 295 >gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori Gambia94/24] Length = 285 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 20/226 (8%) Query: 101 NNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNL 160 +LV L + +LG + ++ N L K++A I+ L QE P L Sbjct: 66 ADLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKL 119 Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP------QETLLKTTLISL 214 + K + + + + + +E + S ++++ Q Sbjct: 120 NFTTTNAEIAKELPKKED-YAKAMVFSFKMEAIKESQIVLLTTEAFEGQFEKTHKEEKEE 178 Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 ++++ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 179 TTKSATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 238 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 239 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 283 >gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38] gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38] Length = 287 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 21/286 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ ++ + F +I S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESFLKLISVPYARVKISAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 D--LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIENVASSFVLIIP----QETLLKTTLISL 214 L + K + + + M + +L Q Sbjct: 121 LNFTTTNAEIAKELPKKEDYTKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEE 180 Query: 215 SSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 ++Q+ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 TTQSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285 >gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. doylei 269.97] gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] Length = 273 Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ +++ I L+ + E ++G N L E Sbjct: 32 DTLKAPLVYAIFDIAN-GGKIGILAGTVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 86 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 87 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 144 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 145 EQISLAMDQTLHNILSGKPAETGNASADSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 204 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 205 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 263 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 264 SKKERLEQL 272 >gi|255262288|ref|ZP_05341630.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255104623|gb|EET47297.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 326 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 65/212 (30%), Gaps = 14/212 (6%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + + C +V L+E + H T R ++ + L + Q+ ++ + Sbjct: 79 GARAIMTCDGPMVSALIE-MSTIGHVTTANSAARRMTRTDVALITPFLGQVLVEVSGGDA 137 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNE----FVTTINMNMTIENVASSFVLIIPQETLL 207 +S L T L V +++ + + +L +P+ Sbjct: 138 DVPVTSLMSGYDEMTRVLDVCTVELIMPQVQYHVYDLSLELGQGSKTGRVMLCLPKRASQ 197 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +++ L +D ++ L +V +G +I Sbjct: 198 DEKIAQ--------DTAKNWKASVEATVLDLPSQLDAVLHTVSMPLSEVRAFAVGDMIKM 249 Query: 268 LHREKTCAILSA-NGKEIYSCELGRVGKNYTI 298 + + + I + LG+V + Sbjct: 250 AASSLKTVQVRGLDSQTITTARLGQVHGTRAL 281 >gi|27904579|ref|NP_777705.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395831|sp|Q89AZ4|FLIM_BUCBP RecName: Full=Flagellar motor switch protein FliM gi|27903976|gb|AAO26810.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 331 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 88/285 (30%), Gaps = 19/285 (6%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 ++ + K K E D+D IS+ KF +I + K N + +S + Sbjct: 45 ENMHECFLKQFTKHISEYSDVDCKISFYKFIIQKFKNIKKNIKNNSISDCFEISPYKKLG 104 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYN--RSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I S+N+ L+E L G E + L+ + K+ I + Sbjct: 105 IIFVSDNISDYLIEYLFGG-CELKNSSNGLFKKLTLSTINIVKKMFKIILEQYYFLWNKV 163 Query: 154 Q--ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + L +++ + S + T + I N + +P T L Sbjct: 164 SLCKMKLILNRLQNLNEISNVNFINSKDTFVTFLFRLRIANKFGMLGICLP--TSLSFQC 221 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLN----------VNIDTRINLKKTTLKDVVTLKI 261 + + N N S D + + + + TL ++ K+ Sbjct: 222 NNEADVNSVHNVSHISYDNVVNTEIRKRLFQVIVYNCKIVLKIVLIENYITLSKIIAFKV 281 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 G ++P + + + I + Y + D N Sbjct: 282 GDILPIHMLDN--VVAYSENVPILIGKYKMFKNKYVFCVVDYYNS 324 >gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A] Length = 287 Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 85/257 (33%), Gaps = 20/257 (7%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I V S S LV L + +LG + ++ N L Sbjct: 40 GSLISVPYARVVISAIEKEENSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMT 189 K++A I+ L QE P L + K + + + + M Sbjct: 98 -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKME 151 Query: 190 IENVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239 + +L + KT + KS + D + Sbjct: 152 ALKESQIILLTTAAFERQFEKTHQEEKEEKTKSTTEEVKTHDASLENIEIRNISMLLDVK 211 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+ Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271 Query: 300 ITDRINFDQKSLKNFLH 316 ITD I ++ L+ H Sbjct: 272 ITD-IGTKKERLEQLKH 287 >gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30] Length = 287 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 84/255 (32%), Gaps = 20/255 (7%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I + V S S LV L + +LG + ++ N L Sbjct: 40 GSLISAPYARVVISAIEKEESSIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVTTINMNMT 189 K++A I+ L QE P L + K + + + + M Sbjct: 98 -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYTKMIAFSFKME 151 Query: 190 IENVASSFVLIIP--QETLLKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239 + +L + KT KS + D + Sbjct: 152 ALKESQIILLTTVAFERQFEKTHQEEKEETTKSATEEVKTHDASLENIEIRNISMLLDVK 211 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+ Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271 Query: 300 ITDRINFDQKSLKNF 314 ITD I ++ L+ Sbjct: 272 ITD-IGTKKERLEQL 285 >gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21] gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21] Length = 281 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 92/250 (36%), Gaps = 18/250 (7%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V+ +S I L+ + E ++G N L E Sbjct: 39 DTLKPPLVYVNFGVS-SGGRVGILAGAVLMSAIGEWMMG----EEEITKNDKLGADEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + +E ++++++ + +FV N ++ IE++ Sbjct: 94 AKEAIQNIISAFTTSLGAQKELPKMEFSLSSCEFIEESIDLK--DFVKLYNYDIKIEDLE 151 Query: 195 SSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARK-------TYQLNVNIDT 244 L++ +TL K+ ++Q K S + + + + Sbjct: 152 EQISLVMDDKFYKTLTKSGDDEATTQQKEGAVSSGEAMMTLGEGLKNINLIMDVRLPVRV 211 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 RI KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 RIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-I 270 Query: 305 NFDQKSLKNF 314 ++ L+ Sbjct: 271 GTKKERLEQL 280 >gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32] Length = 287 Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 83/255 (32%), Gaps = 20/255 (7%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I + V S LV L + +LG + ++ N L Sbjct: 40 GSLISAPYARVVISVIEKEESFIELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMT 189 K++A I+ L QE P L + K + + + + M Sbjct: 98 -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKKDYAKMIVFSFKME 151 Query: 190 IENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239 + +L KT + KS + D + Sbjct: 152 ALKESQIILLTTVAFEHQFEKTHQEEKEEKTKSATEEIKTHDASLENIEIRNISMLLDVK 211 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+ Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271 Query: 300 ITDRINFDQKSLKNF 314 ITD I ++ L+ Sbjct: 272 ITD-IGTKKERLEQL 285 >gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319] Length = 385 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 110/327 (33%), Gaps = 54/327 (16%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ VDI+ + + F +S Sbjct: 56 EIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTNEFPNPHVAVQVQYTEGFSGTN 115 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG + E ++ + LS V++ + + + + ++ Sbjct: 116 LLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQM-MGSAATSMSTVFQKKI 174 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLI-------IPQET 205 + SP D +I + ++ ++ N+ + + ++ L+ + +E Sbjct: 175 DISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSLVEEL 234 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQ---------------------------- 237 L+ + + +S K + +E +P A + Q Sbjct: 235 LVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVHVPVDVQPASFSEFEHMS 294 Query: 238 ------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 L++ + + L +T T+++++ L G +I + N K Sbjct: 295 SPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKL 354 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKS 310 I E+ + +N+ +R+TD I+ + Sbjct: 355 IAKGEVVVIDENFGVRVTDIISQKDRI 381 >gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551] Length = 385 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 109/327 (33%), Gaps = 54/327 (16%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ VDI+ + F +S Sbjct: 56 EIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTDEFPNPHVAVQVQYTEGFSGTN 115 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG + E ++ + LS V++ + + + + ++ Sbjct: 116 LLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQM-MGSAATSMSTVFQKKI 174 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLI-------IPQET 205 + SP D +I + ++ ++ N+ + + ++ L+ + +E Sbjct: 175 DISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSLVEEL 234 Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQ---------------------------- 237 L+ + + +S K + +E +P A + Q Sbjct: 235 LVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASFAEFEHVS 294 Query: 238 ------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 L++ + + L +T T+++++ L G +I + N K Sbjct: 295 SPQGDSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILINSKL 354 Query: 284 IYSCELGRVGKNYTIRITDRINFDQKS 310 I E+ + +N+ +R+TD I+ + Sbjct: 355 IAKGEVVVIDENFGVRVTDIISQRDRI 381 >gi|134280726|ref|ZP_01767436.1| conserved hypothetical protein [Burkholderia pseudomallei 305] gi|134247748|gb|EBA47832.1| conserved hypothetical protein [Burkholderia pseudomallei 305] Length = 310 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R A+++ + D S+ Sbjct: 146 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 187 Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 ++ + + SS +++ + + P + Sbjct: 188 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 243 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL + + ++ DV+ L+ G V+P T A + + ++++ + Sbjct: 244 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 301 Query: 297 TI 298 + Sbjct: 302 CL 303 >gi|126445346|ref|YP_001061224.1| hypothetical protein BURPS668_A0218 [Burkholderia pseudomallei 668] gi|126224837|gb|ABN88342.1| conserved hypothetical protein [Burkholderia pseudomallei 668] Length = 310 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R A+++ + D S+ Sbjct: 146 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 187 Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 ++ + + SS +++ + + P + Sbjct: 188 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 243 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL + + ++ DV+ L+ G V+P T A + + ++++ + Sbjct: 244 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 301 Query: 297 TI 298 + Sbjct: 302 CL 303 >gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 81116] gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 327] Length = 280 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4] Length = 287 Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 94/286 (32%), Gaps = 21/286 (7%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ ++ + + +I + + S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESWESLISAPYARVMISAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 --VLVTALSDLMLGGEGASKEEMNNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIENVASSFVLIIP--QETLLKTTLISLSS 216 L + K + + + + M + +L + KT Sbjct: 121 LNFTTTNAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEE 180 Query: 217 QNKSENQSEDLIDPFARKTY--------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 KS + D + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 TTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 285 >gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase [Carnobacterium sp. 17-4] Length = 359 Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats. Identities = 42/329 (12%), Positives = 103/329 (31%), Gaps = 50/329 (15%) Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87 +T I +G + + V I+ KF II + V + Sbjct: 31 DQTQTDIIGEIGNISMSQAATTLSSILSRRVTITTPVVSCLKFQEIIDASVTPKVVTTIE 90 Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA----KRTIAQI 142 + + + + I + + ++ + + +E + + Sbjct: 91 FKKGLAGSNLLMMNEKDAIIIADLMMDGDGNA----EGKEFTELELSAVGEAMNQMMGSA 146 Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201 + + + + P + + + V I MT+++ + S + I Sbjct: 147 ATAMATMLERIVDILPPEVEVWKNQEQVNYDRISGDTTVCKIAFQMTVDDLIESEIMQIF 206 Query: 202 PQETLLKTTLISLSSQ-----NKSENQSEDLIDPFARK---------------------- 234 ET+ + I L+ + ++ ++E++ P Sbjct: 207 TLETVRNISNIVLADEGEVITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELT 266 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + + + K T+KD+++L G V+ + NG Sbjct: 267 HAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNG 326 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310 K I E+ + +++ IRIT+ ++ +Q+ Sbjct: 327 KLIAEGEVVVINESFGIRITNILSKEQRI 355 >gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 280 Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ +++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] Length = 280 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ +++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|125657199|gb|ABN48687.1| hypothetical protein Bpse6_01001805 [Burkholderia pseudomallei] Length = 289 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R A+++ + D S+ Sbjct: 125 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 166 Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 ++ + + SS +++ + + P + Sbjct: 167 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 222 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL + + ++ DV+ L+ G V+P T A + + ++++ + Sbjct: 223 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 280 Query: 297 TI 298 + Sbjct: 281 CL 282 >gi|254683265|ref|ZP_05147126.1| flagellar motor switch protein FliM [Bacillus anthracis str. CNEVA-9066] gi|254734618|ref|ZP_05192330.1| flagellar motor switch protein FliM [Bacillus anthracis str. Western North America USA6153] gi|254741027|ref|ZP_05198715.1| flagellar motor switch protein FliM [Bacillus anthracis str. Kruger B] gi|254755270|ref|ZP_05207304.1| flagellar motor switch protein FliM [Bacillus anthracis str. Vollum] gi|254759806|ref|ZP_05211830.1| flagellar motor switch protein FliM [Bacillus anthracis str. Australia 94] Length = 111 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Query: 197 FVLIIPQETLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 + IP ++ + L S + S ++ + K Q+ + I +K T+ Sbjct: 1 MRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMG 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ ++ G +IP + + +GK ++C +G+ G + Sbjct: 61 EIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 104 >gi|167725908|ref|ZP_02409144.1| hypothetical protein BpseD_43225 [Burkholderia pseudomallei DM98] Length = 289 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R A+++ + D S+ Sbjct: 125 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 166 Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 ++ + + SS +++ + + P + Sbjct: 167 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 222 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL + + ++ DV+ L+ G V+P T A + + ++++ + Sbjct: 223 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 280 Query: 297 TI 298 + Sbjct: 281 CL 282 >gi|254182911|ref|ZP_04889504.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|254299706|ref|ZP_04967155.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|157809502|gb|EDO86672.1| conserved hypothetical protein [Burkholderia pseudomallei 406e] gi|184213445|gb|EDU10488.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] Length = 282 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 26/182 (14%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R A+++ + D S+ Sbjct: 118 PPIPE----TTTERRLAERLAAELAR--------------TVARAIPFDAPAGEPPAPSS 159 Query: 179 EFV--TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236 ++ + + SS +++ + + P + Sbjct: 160 GAHLFAICSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRERPSP----ST 215 Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL + + ++ DV+ L+ G V+P T A + + ++++ + Sbjct: 216 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARVMTHDAQLFTASIAEHNGKL 273 Query: 297 TI 298 + Sbjct: 274 CL 275 >gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kronotskyensis 2002] Length = 378 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 112/371 (30%), Gaps = 80/371 (21%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 TSP P + + DK + +I + L + +K+++ + Sbjct: 19 ETSPSSPTISDQ------DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSIL 68 Query: 69 KFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY--NR 125 K+ + F + V + + ++G + + Sbjct: 69 KWDELPREFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTEL 128 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTT 183 LS +++ + + S L+ ++ + +P D + + + Sbjct: 129 QLSAIQEAMNQMV-GSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187 Query: 184 INMNMTIEN-VASSFVLIIP-----------------------------QETLLKTTLIS 213 + MTI + + S + +IP QETL + L Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKEEVLRQ 247 Query: 214 LSSQNK------------SENQSEDLIDP-----------FARKTYQ---------LNVN 241 SQ Q + F + + L+V Sbjct: 248 TFSQTTKSQKKASQPSYTPPPQRTEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVP 307 Query: 242 IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 ++ + L +T +++++ G +I + NGK I E+ + +N+ +R Sbjct: 308 LEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVR 367 Query: 300 ITDRINFDQKS 310 ITD +N + Sbjct: 368 ITDIVNPSNRL 378 >gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 280 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] Length = 280 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM 6725] gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor bescii DSM 6725] Length = 378 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 114/371 (30%), Gaps = 80/371 (21%) Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68 TSP P + + DK + +I + L + +K+++ + Sbjct: 19 ETSPSSPTISDQ------DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSIL 68 Query: 69 KFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY--NR 125 K+ + F + V + + ++G + + Sbjct: 69 KWDELPKEFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTEL 128 Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTT 183 LS +++ + + S L+ ++ + +P D + + + Sbjct: 129 QLSAIQEAMNQMV-GSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187 Query: 184 INMNMTIEN-VASSFVLIIP-----------------------------QETLLKTTLIS 213 + MTI + + S + +IP QET+ + L Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKEEVLRQ 247 Query: 214 LSSQNK------------SENQSEDLIDP-----------FARKTYQ---------LNVN 241 SSQ Q ++ F + + L+V Sbjct: 248 TSSQTTKSQKKASQPPYTPPPQRKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVP 307 Query: 242 IDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 ++ + L +T +++++ G +I + NGK I E+ + +N+ +R Sbjct: 308 LEITVELGRTQKLVREILEFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVR 367 Query: 300 ITDRINFDQKS 310 ITD +N + Sbjct: 368 ITDIVNPSNRL 378 >gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221] gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 81-176] gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 273 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I L+ + E ++G N L E Sbjct: 32 DTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 86 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 87 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 144 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 145 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 204 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 205 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 263 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 264 SKKERLEQL 272 >gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG 18818] Length = 278 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 82/204 (40%), Gaps = 14/204 (6%) Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165 L + +LG E+ P++ L + K+++ IS LN +E + Sbjct: 69 ALADMMLGGEGESKPEMSEDDLDAI-KEISANIFGAISTSLNS----QKELPKLNFSCSN 123 Query: 166 IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225 I+++ ++ F N +++++ S+F ++ + + + +E+ S Sbjct: 124 IEFVTQSIELSR--FDKAYIFNFSLDSIQSNFTILANASFVGLFEGGAATPVAHAESGST 181 Query: 226 DLIDPFARK-------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 + + + +N+ RI K+ LKDV+ + IG VI + Sbjct: 182 PVAHALSPTEFKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLDIL 241 Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302 + K I E+ V N+ I+ITD Sbjct: 242 VDDKVIAKGEVVIVDGNFGIQITD 265 >gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83] Length = 287 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 84/257 (32%), Gaps = 20/257 (7%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I + V S S LV L + +LG + ++ N L Sbjct: 40 GSLISAPYARVVISAIEKEESSIELLTPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMT 189 K++ I+ L QE P L + K + + + + M Sbjct: 98 -KEMTSNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMIVFSFKME 151 Query: 190 IENVASSFVLIIPQETL--LKTTLISLSSQNKSENQSEDLIDPFARKTY--------QLN 239 + +L KT + KS + D + Sbjct: 152 ALKESQIILLTTVAFEHQFEKTHQEEKEEKTKSATEEVKTHDASLENIEIRNISMLLDVK 211 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+ Sbjct: 212 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 271 Query: 300 ITDRINFDQKSLKNFLH 316 ITD I ++ L+ H Sbjct: 272 ITD-IGTKKERLEQLKH 287 >gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464] Length = 290 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 23/258 (8%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + + S S LV L + +LG + ++ N L K Sbjct: 42 LISAPYARVMISAIEKEESSIELVAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF-K 98 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIE 191 ++A I+ L QE P L + K + + + + M Sbjct: 99 EMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKEDYAKMMVFSFKMEAL 153 Query: 192 NVASSFVLI----------IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQL 238 + +L + QE + + S+ + + L + R + Sbjct: 154 KESQIILLTTAAFERQFEKMHQEEKEEKEETTKSTAEEVKTHDASLENIEIRNISMLLDV 213 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I Sbjct: 214 KLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGI 273 Query: 299 RITDRINFDQKSLKNFLH 316 +ITD I ++ L+ H Sbjct: 274 QITD-IGTKKERLEQLKH 290 >gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1] gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus WK1] Length = 383 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 106/336 (31%), Gaps = 63/336 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + + + F + + Sbjct: 45 EIGNISFGSSATALSMLLNQKVEITTPNVSLVERAKVAEEFPHPYVAIQVSYTEGFLGTN 104 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + ++G P + LS V++ + + + + ++ S Sbjct: 105 LLVIKQSDAAIIADLMMGGDGTNPPAFMDEIQLSAVQEAMNQM-MGSAATSMSTIFSKKV 163 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ-------ETL 206 + SP D+ + ++ + ++ + + N + S+ + ++P E L Sbjct: 164 DISPPSLHLLDLKEGEGFEYLPPDDVLVKVSFRLKVGNLIDSNIMQLLPIHFAKELVENL 223 Query: 207 L----------------KTTLISLSSQNKSENQSEDLIDPFARK---------------- 234 L + + S+Q K S A + Sbjct: 224 LNPSSTKTETSATINTNEPHQTAPSAQTKPAPSSAQQTQKEAPQHFGTGAVQQPVNVQPV 283 Query: 235 ------------------TYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTC 274 L++ + + L +T +++D+++L G +I Sbjct: 284 AFASFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKLAGEP 343 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K I E+ + +N+ +R+T I+ + Sbjct: 344 VDILVNNKLIAKGEVVVIDENFGVRVTSIISQSDRL 379 >gi|114766080|ref|ZP_01445089.1| possible flagellar switch protein FliM [Pelagibaca bermudensis HTCC2601] gi|114541635|gb|EAU44676.1| possible flagellar switch protein FliM [Roseovarius sp. HTCC2601] Length = 396 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 52/187 (27%), Gaps = 14/187 (7%) Query: 118 TIPQLYNRSLSTVEKKLAKRTI----AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 T + R L+ + + + + L Q + + Sbjct: 107 TQMPVEERPLTQTDAAMMAPLLDSALERFERYLEDHPLQPQIAGFRFGAMVEDSRTAGLL 166 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 S +++++ + L +P + + P + Sbjct: 167 LDASGYRAFRVSLDLALGRRTGELALFLPDRAEAAAADEAGDLGQEG---------PHEQ 217 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRV 292 K L V++D ++ L L+ G +IP L A G + LG++ Sbjct: 218 KMKLLPVHMDAVLHRLVLPLSAAEKLQPGDLIPLPPEALDGVELLAGDGSGVAGGRLGQI 277 Query: 293 GKNYTIR 299 +R Sbjct: 278 NGMRAVR 284 >gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 414] Length = 280 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 93/249 (37%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I S L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFNITN-GGKIGILASAVLMSAIGEWMMG----EEEITKNDQLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQE--TLLKTTLISLSSQNKSENQ-SEDLIDPFARK------TYQLNVNIDTR 245 L + Q +L L + N N+ +E+ + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKLAETGNANTDSNRNAEEKAIMLGEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|238762374|ref|ZP_04623345.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638] gi|238699359|gb|EEP92105.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638] Length = 291 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 83/230 (36%), Gaps = 32/230 (13%) Query: 93 SNFFIGCSNNLVITLLENLLG--ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQ 148 N L++ +L + G T+ L N + E++L + +I+ ++ Sbjct: 85 GNIAFDIDRTLLLNILNDYYGLTKEKSTVSVLDNTPKTQTEERLKNKLSIEIADLILNQP 144 Query: 149 CISTT-----QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 S+P + Y +D+L K+ + + NV Sbjct: 145 VFGEPLVIKNNNSTPIVSWSYQMDFLLKDYEN------VGFTLLIDTPNV---------- 188 Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 + LL T + + K++ S + F + QL + + ++++ TL D++ +K G Sbjct: 189 DRLLNTLHTGIKEEKKTQTLS---VTQFNQLVSQLPIQLTSQLSCSDLTLFDLMAIKEGD 245 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 +IP E+ + ++S + + ++ + + + Sbjct: 246 IIPTSLPERFPV--FIGKQPLFSAVVTESRGKLFL--SEFNDKTNEMNHD 291 >gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 269 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 83/238 (34%), Gaps = 10/238 (4%) Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124 + + I F+ S+S + + L + +LG E + + Sbjct: 26 VEIKQQGEKIVDIIPPFIKVNVSVSP-KGEIVFILTPEIATALGDMMLGGEGEARTDIND 84 Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184 L K ++ I L + DI +++ N + +++ + Sbjct: 85 EDL-----DATKEIVSNIFGSLTSTLEAQDNMENLTFKVEDIAFVETNEDF--SKYAYFL 137 Query: 185 NMNMTIENVASSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243 ++ + +V ++ ++ + + I S ++++ + + + Sbjct: 138 DLICKVASVEKECFVLFDKDFVSIFNNDIKDKISESSHELNKEIPSQL-DMLMDVKLQLR 196 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 RI K LKDV+++ IG ++ + K+I E+ V N+ I+IT Sbjct: 197 VRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGIQIT 254 >gi|49184601|ref|YP_027853.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str. Sterne] gi|65319044|ref|ZP_00392003.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str. A2012] gi|227815464|ref|YP_002815473.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] gi|49178528|gb|AAT53904.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str. Sterne] gi|227003444|gb|ACP13187.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] Length = 120 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 201 IPQETLLKT--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 IP ++ + L S + S ++ + K Q+ + I +K T+ ++ Sbjct: 14 IPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQ 73 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ G +IP + + +GK ++C +G+ G + Sbjct: 74 IEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 113 >gi|49184600|ref|YP_027852.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|65319043|ref|ZP_00392002.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str. A2012] gi|227815465|ref|YP_002815474.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] gi|254683264|ref|ZP_05147125.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. CNEVA-9066] gi|254734617|ref|ZP_05192329.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Western North America USA6153] gi|254741026|ref|ZP_05198714.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Kruger B] gi|254755269|ref|ZP_05207303.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Vollum] gi|254759805|ref|ZP_05211829.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. Australia 94] gi|49178527|gb|AAT53903.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|227004068|gb|ACP13811.1| putative flagellar motor switch protein FliM [Bacillus anthracis str. CDC 684] Length = 200 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 10/136 (7%) Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENF---VFS 84 ++++ I+S+ G + L +M + +++ ++ + F S + +++ Sbjct: 54 RSLQAIASTFGKQTSQTLS----ARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVI 109 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 L I VI + E LG R L+ E + Sbjct: 110 DLGLPEL-GEIVIEIDLAFVIYIHECWLGGD-SKRNFTMRRPLTAFEFLTLDNIFMLLCK 167 Query: 145 VLNQCISTTQESSPNL 160 L Q + P Sbjct: 168 NLEQSFESVVAIEPKF 183 >gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470] Length = 288 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 23/257 (8%) Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132 +I + + S S LV L + +LG + ++ N L K Sbjct: 42 LISAPYARVMVSAIEKEESSIELVAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF-K 98 Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 ++A I+ L QE P L + K + + + I + +E Sbjct: 99 EMASNIFGAIATSLKS-----QELLPKLNFTTTNAEIAKELPKKED-YAKMIVFSFKMEA 152 Query: 193 VASSFVLIIPQETLLKT-------TLISLSSQNKSENQSEDLIDPFARKTY------QLN 239 + S ++++ + + ++ +E + + Sbjct: 153 LKESQIILLTTAAFERQFEKTHQEEKEEETKKSATEEVKTHDASLENIEIRNISMLLDVK 212 Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 +N+ RI KK LKDVV++ IG V+ + + K I E+ V N+ I+ Sbjct: 213 LNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQ 272 Query: 300 ITDRINFDQKSLKNFLH 316 ITD I ++ L+ H Sbjct: 273 ITD-IGTKKERLEQLKH 288 >gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] Length = 287 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 18/225 (8%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKFNF 123 Query: 163 FYDIDYLKKNTNRLSNEFVTTI-NMNMTIENVASSFVLIIP------QETLLKTTLISLS 215 + K + + + + M + +L ++T + + Sbjct: 124 TTTNAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEETTK 183 Query: 216 SQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S + + ++ + + +N+ RI KK LKDVV++ IG V+ Sbjct: 184 SAAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 260.94] Length = 280 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ +++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIILSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|167572946|ref|ZP_02365820.1| translocation protein in type III secretion [Burkholderia oklahomensis C6786] Length = 361 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +V + ++ L + +L+ G V+ + L GK L VG Sbjct: 291 LDAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGFVTLQVAGKPFARGTLLDVGGR 350 Query: 296 YTIRITDRINF 306 +RI + Sbjct: 351 LAVRIEHLLPA 361 >gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni HB93-13] Length = 280 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni IA3902] gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp. jejuni 305] Length = 280 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V++ ++++ I L+ + E ++G N L E Sbjct: 39 DTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMG----EEEITKNDKLGPDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + ++ +++ ++ + +F ++ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKDIPKMDFSIESCEFVPESVDFK--DFKKLFLYDVKIGDLE 151 Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQ---SEDLIDPFARK------TYQLNVNIDTR 245 L + Q + + N S + +E+ + + + + + R Sbjct: 152 EQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVR 211 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 I KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 IGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IG 270 Query: 306 FDQKSLKNF 314 ++ L+ Sbjct: 271 SKKERLEQL 279 >gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor hydrothermalis 108] Length = 376 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 111/352 (31%), Gaps = 73/352 (20%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85 DK + +I + L + +K+++ I K+ + F Sbjct: 30 DKDVLGEIGNISMGTAATTLSILLNQKVNITTPI----VSVLKWEELPKEFPVPYVAIKV 85 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + V + + ++G + E +L LS +++ + + S Sbjct: 86 VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEAMNQMV-GSAS 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200 L+ ++ + +P D + + + + MTI + + S + + Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQL 204 Query: 201 IP-----------------------------QETLLKTTLISLSSQ-------------- 217 IP QE++ + L SSQ Sbjct: 205 IPVDFAKQLVDAMLKNALGTPAQIETSAQSQQESVKEEVLRQPSSQPTKSQKAAPQPSYT 264 Query: 218 --------NKSENQSEDLIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVT 258 + N S + F + + L+V ++ + L +T +++++ Sbjct: 265 PPPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILE 324 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 325 FSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376 >gi|167949199|ref|ZP_02536273.1| flagellar motor switch protein FliM [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 111 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 207 LKTTLISLSSQNKSEN--QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 ++ L + +S+ + E + + + + + TL+++ L G + Sbjct: 1 MEPIRELLDAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGDI 60 Query: 265 IPFLHREKTCAI 276 IP E+ Sbjct: 61 IPIELPEEVEVT 72 >gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9] Length = 261 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 15/175 (8%) Query: 140 AQISAVLNQCISTT--------QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 + + L+ + + SP + + T+RL+ F + E Sbjct: 91 DEHAMALSSIFEASCNELCQHLSQKSPVTVQVERMSAPELPTDRLAELF-------LEAE 143 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 +++ + L TT + S+Q S + + +N+ R ++ Sbjct: 144 GTKIRVSILLFFDQQLVTTYQNASAQTFSFPEVTGTSTSNLNLVLDVELNVTLRFGQRQL 203 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +L++V+ L G V+ + L +GK + E + NY +RIT + Sbjct: 204 SLREVLDLTSGSVVELDRQVDEPVELVLDGKVVARGEAVIIDGNYGMRITQVLQQ 258 >gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272] gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273] Length = 548 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 96/300 (32%), Gaps = 36/300 (12%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 + + + ++ V IS + ++ H + FV + Sbjct: 253 EIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHY-NGVPVPFVILNVDFVEGLKNEN 311 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISAVLNQCIS 151 + ++ +T+++ ++ + E P + LS +E + + + + +++ Sbjct: 312 VFVFTKDVALTMVDLMMMGTGEIDP---EKELSELELSGIKEIMNQMMGHAATAMSEMFK 368 Query: 152 TTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT 209 + +P F + + ++ + + + I N+ I ++ S I+ + Sbjct: 369 EKMDMTPPDVKFVSLKEEMEYLGEAMEVDELVQITFNIEIGDLLQSKMYQILSIAEAKEM 428 Query: 210 TLISL-----------SSQNKSENQSEDLIDPFARKTYQ--------------LNVNIDT 244 L + E I P + + + +N+ Sbjct: 429 VRRLLYPMVEEQEEIVEEVIEEEKIPAPAIQPIEYQEVKQVEPVYMDASILKNVEMNVKF 488 Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 T++D+++L+ + + + N + EL V + +++T + Sbjct: 489 VFGSTVRTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548 >gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1] gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1] Length = 108 Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 27/79 (34%) Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 DP + +NV I + ++ ++ + G VIP + AN + Sbjct: 21 WSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVAR 80 Query: 287 CELGRVGKNYTIRITDRIN 305 E+ I +T N Sbjct: 81 GEIQISDDKIAIAVTREAN 99 >gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans Nor1] Length = 376 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 45/357 (12%), Positives = 106/357 (29%), Gaps = 72/357 (20%) Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70 SP+ P L LG+ I I L + V I+ Sbjct: 23 SPVVPELDDMAKDALGE---IGNICMGSAATTLSIL-------LGRRVSITTPQVSVTTL 72 Query: 71 SHIIHSFKENF-VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 + I + + V + + + + ++G P N + Sbjct: 73 NEIKRQYPLPYLVIEVYYSHGILGTNLLAIRQQDALIIADLMMGGDGSNPPTELNDLYMS 132 Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS--NEFVTTINMN 187 + + + + ++ + SP + +D + N + ++ +E + +++ Sbjct: 133 AVSEAMNQMMGSTATSMSTVFKKKVDISPPQVNVFDF-GVDGNISAMAAGDEPIVSVSFR 191 Query: 188 MTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR------------- 233 M +E+ + S + IIP + +++ + + A Sbjct: 192 MEVEDLIDSEIMQIIPINVAKEMVESLMAAIQPTPKTTTSAAPNAATSTPQPVMAPARET 251 Query: 234 ------------------------------------KTYQLNVNIDTRINLKKTT----- 252 T N+N+ + L+ T Sbjct: 252 NFAQAQQAAALPKTHQPLTNVTVQPVQFAPLKPTTPTTSDTNINLIMDVPLQVTVELGRT 311 Query: 253 ---LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +++++ L G V+ + NGK I E+ + +N+ +RIT+ ++ Sbjct: 312 RKLIREILELGPGSVVELDKLAGEPVDILVNGKLIAKGEVVVIDENFGVRITEIVSP 368 >gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM 12809] Length = 299 Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 102/307 (33%), Gaps = 47/307 (15%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 E S+ + K+ D D+ +S++ SG + ++ + S Sbjct: 7 ENRHSTFTDVAKEVFQSTLNSMFDKDIKVSFSEVSSGGPDDLAGGYEGQVLIIVTEEKSG 66 Query: 92 SSNFFIGCSNNLVI-----TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146 + + ++ +++ + + ++ + K+LA + +A ++ L Sbjct: 67 LEAGLMFKTADITFLTNLMMMMDEP----GKESLEDDDKD--AI-KELASQALAAVTVPL 119 Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206 + T + S ++D D ++ I+ ++ I + ++F Sbjct: 120 EE--KTQVKVSFRIDDVMVNDAPALF----QSDAYMIIDADLGIGDQNTTF------RFY 167 Query: 207 LKTTLISLSSQNKSENQS--------EDLIDPFARK---------------TYQLNVNID 243 L++L E ED +P ++V + Sbjct: 168 TDINLMNLFGGGDDEEPDFGSAFTFPEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVS 227 Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 ++ K LKD++T+ G +I L N K I E+ V + RI + Sbjct: 228 VKMGSTKMFLKDILTMGSGNIIELDESADEPVELVINNKVIARGEVVIVDGYFGFRIKEI 287 Query: 304 INFDQKS 310 ++ ++ Sbjct: 288 VSRAERI 294 >gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196] gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196] Length = 116 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 LL + ++E S L + Q + ++ R+ ++ +KDV+ L+ G Sbjct: 16 TALLAPAQGDSPLEAEAETASLSLRRTIEERVTQAPLRLEIRLPIRGLRVKDVLALRKGA 75 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + G+++ E + K +R+T Sbjct: 76 IFETQWPADEDIPGDCGGQQLVWAEFEVIDKKLAVRVT 113 >gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis MB4] gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Thermoanaerobacter tengcongensis MB4] Length = 366 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 51/303 (16%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 V I+ + + F +V + + + + ++G Sbjct: 61 VTITTPKVSVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDG 120 Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + ++ + LS V + + + I + L+ ++ SP D Sbjct: 121 KVEEGEITDLHLSAVGEAMNQM-IGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVA 179 Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPF 231 V + M + ++ S + +IP + L+K+ L ++ + +++ Sbjct: 180 FPQGDVVRVAFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQATTSTSPPAEVKEMKKES 239 Query: 232 ARKTYQ------------------------------------------LNVNIDTRINLK 249 ++ + L+V + + L Sbjct: 240 KGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELG 299 Query: 250 KTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 KT +KD++ L G +I + ANGK I E+ + +N+ +RITD ++ Sbjct: 300 KTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPG 359 Query: 308 QKS 310 ++ Sbjct: 360 KRI 362 >gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1] gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5] gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1] Length = 293 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 21/261 (8%) Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129 I F N + ++ + + + L + ++G ++ L L Sbjct: 35 VGDFI--FVNNASINV-HIADTNLTITLAIPIPMATALADLMVGGEGKSKETLEPDDLDA 91 Query: 130 VEKKLAKRTIAQISAVLNQ-------CISTTQES---SPNLEDFYD--IDYLKKNTNRLS 177 + K++ ++ L +L D Y ++ S Sbjct: 92 I-KEIGSNVFGALTTALKSQEVLPKLSFEIEGAVFAHDASLLDPYSDGFEFSFSLDQIQS 150 Query: 178 NEFVTTINMNMTIENVASSF-VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT- 235 + F+ + + + P + + + N + L R Sbjct: 151 SFFIFCGGLFIETFKKKEVIKNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNIN 210 Query: 236 --YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + +N+ RI KK LKDVV++ IG V+ + + K I E+ V Sbjct: 211 MLLDIKLNVRVRIGQKKMILKDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIVD 270 Query: 294 KNYTIRITDRINFDQKSLKNF 314 N+ I+IT+ I ++ L+ Sbjct: 271 GNFGIQITE-IGTKKERLEQL 290 >gi|304412522|ref|ZP_07394128.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS183] gi|307307181|ref|ZP_07586919.1| surface presentation of antigens (SPOA) protein [Shewanella baltica BA175] gi|304349164|gb|EFM13576.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS183] gi|306910420|gb|EFN40851.1| surface presentation of antigens (SPOA) protein [Shewanella baltica BA175] Length = 293 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 18/196 (9%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 + T R+ S E +LAK+ + + L T L + Sbjct: 112 GNTSTPLSSPLRNPSQSEFRLAKKLLLSVVDELPNSTIDTNTLEVELIKGH--------- 162 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 + + N T ++ + L + L L+ Q K S DL A Sbjct: 163 --MPLTVSAVWSFNFTNGSLTPPMLFC-----LTEHLLGHLAEQPKKSEISADLPAKLAV 215 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 L + + + ++ + LK G ++P KT LS ++ + Sbjct: 216 WLKSLPIKMQLTLGQHSIPVQSLSQLKTGDILPINLYPKTL--LSIGNTTLFHASVHSHE 273 Query: 294 KNYTIRITDRINFDQK 309 ++T + +++ Sbjct: 274 GQMVAKLTQDVYQNEE 289 >gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia MC0-3] gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia cenocepacia MC0-3] Length = 290 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 18/206 (8%) Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 + C L++ LL G S + + E++ + AQ L Sbjct: 94 TRGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETGAERRFS----AQQHTALLTAF 149 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + S L D + + V + ++ + V L Sbjct: 150 A-----SAMLGDQAEPFSPNGDMLPGPGVRVLRMTISDRLRKVGGDVEF-----ALDDMW 199 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 L L ++ +++ A + V I + K L +++ ++ G V+P Sbjct: 200 LDHLFARLDAQHLRPAPDSAQAN--VSIPVTISVHVLSKNMRLDELLRMRPGDVLPVRLP 257 Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296 E + N +Y L Sbjct: 258 E--TVDVLVNNVRLYRAALAEHQGAL 281 >gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52] Length = 290 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 25/261 (9%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 +I V S S LV L + +LG + ++ N L Sbjct: 40 GSLISVPYARVVISAIEKEESSVELLAPV--VLVTALSDLMLGGEGASKEEMDNDDLDAF 97 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 K++A I+ L QE P L + K + + + I + + Sbjct: 98 -KEMASNIFGAIATSLKS-----QELLPKLNFTTINAEIAKELPKKED-YAKMIVFSFKM 150 Query: 191 ENVASSFVLIIPQETLLKT---------TLISLSSQNKSENQSEDLIDPFARKTY----- 236 E + S ++++ + ++++ +E + Sbjct: 151 EALQESQIILLTTVAFERQFKKTHQEEKEEKEETTKSATEEVKTHDASLENIEIRNISML 210 Query: 237 -QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + +N+ RI KK LKDVV++ IG V+ + + K I E+ V N Sbjct: 211 LDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGN 270 Query: 296 YTIRITDRINFDQKSLKNFLH 316 + I+ITD I ++ L+ H Sbjct: 271 FGIQITD-IGTKKERLEQLKH 290 >gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 360 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L T++D++ L G +I L NGK I E+ + +N Sbjct: 281 MDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEN 340 Query: 296 YTIRITDRINFDQKS 310 + +R+TD IN + Sbjct: 341 FGVRVTDIINPMDRL 355 >gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195] gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195] Length = 279 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 16/248 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 + K V+ +S I L+ + E ++G N L E Sbjct: 39 DTLKPPLVYVNFGVS-SGGRIGILAGAVLMSAIGEWMMG----EEKITKNDKLGADEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + +E ++++++ + +FV N ++ I+ + Sbjct: 94 AKEAIQNIISAFTTSLGAQKELPKMEFSLSSCEFIEESIDLK--DFVKLYNYDIKIDGLE 151 Query: 195 SSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLI---DPFARK--TYQLNVNIDTRI 246 L + +TL K+ + + + E ++ + + + + RI Sbjct: 152 EQISLAMDDKLYKTLTKSGDAKAQQKEGAISSGEAMMMLGEGLKNINLIMDVRLPVRVRI 211 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 KK LKDV+T+ IG V+ + K I E+ V N+ ++IT+ I Sbjct: 212 GNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITE-IGT 270 Query: 307 DQKSLKNF 314 ++ L+ Sbjct: 271 KKERLEQL 278 >gi|332162916|ref|YP_004299493.1| flagellar motor switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667146|gb|ADZ43790.1| Flagellar motor switch protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862339|emb|CBX72499.1| hypothetical protein YEW_GP28300 [Yersinia enterocolitica W22703] Length = 272 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 80/226 (35%), Gaps = 24/226 (10%) Query: 93 SNFFIGCSNNLVITLLENLLG--ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150 N +L++ +L + G + N + E +L + +I+ + + Sbjct: 66 GNIAFDIERSLLLNILNDYYGLTKEKNNSSIVDNTPKTQTEDRLKNKLSIEIADL---IL 122 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII--PQ-ETLL 207 + P + + + + R+ + + F L+I P + LL Sbjct: 123 NQPMFGEPLVIKNNNATPIVNWSYRM--------DFLLKDYEDGG-FTLLIDTPHVDRLL 173 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 T + K++ SE F + QL + + ++++ + T D++ +K G +IP Sbjct: 174 NTLHTESKEKKKTQTLSEK---QFNQLVSQLPIRLTSQLSCSELTFFDLMAIKEGDIIPA 230 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 E+ + ++S + + ++ + + + Sbjct: 231 SLPERFPV--FIGKQPLFSAVVTESRGKLFL--SEFNDQTNEMTHD 272 >gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4] gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4] Length = 321 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL + + + + TL+ + L+ G + ANGK I CEL + + Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPVSNPVTMRANGKIIGECELVNINER 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGSQE 319 >gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484] Length = 125 Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 LK + + + S+DL + R+ ++ + ++ I L +++ L G V+ Sbjct: 19 LKEQQEAEGRHGEGQGDSQDLSE-KVRRFLEIPLELEVVIGRTTLKLGELLHLGPGSVVE 77 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ++ + NGK + E+ V + +RITD I +++ Sbjct: 78 LDNHVESPVDILVNGKLVAKGEIVVVEDKFGVRITDIIAREERI 121 >gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM 12563] Length = 359 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L T++D++ L G +I L NGK I E+ + +N Sbjct: 280 MDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEN 339 Query: 296 YTIRITDRINFDQKS 310 + +R+TD IN + Sbjct: 340 FGVRVTDIINPMDRL 354 >gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC 15579] Length = 390 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 102/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + SF+ N S Sbjct: 54 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKDSFEIPNIALEVKYTSGIVGEN 113 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 114 LLVMKIDDAAVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 171 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + S+ + ++P +T K Sbjct: 172 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSNIMQLLPMKTAKKIV 231 Query: 211 LISL-------------------------SSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + + ++ Q P R+ ++ V Sbjct: 232 AIMMGEESMDEPSVENNSTPAPIVEEKKSAKAVEAPKQEIVYEKPIEREAPKVEVKQASF 291 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 292 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 351 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT+ ++ ++ Sbjct: 352 IQVNGKKVAYGEVVVVDENFGVRITNIVSSQERI 385 >gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sibiricum 255-15] Length = 376 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 34/330 (10%), Positives = 98/330 (29%), Gaps = 57/330 (17%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + + + Sbjct: 45 EVGNISLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEGFKGEN 104 Query: 96 FIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + + ++G + ++ +LS V++ + + + + ++ S Sbjct: 105 VLILTQRDASVIANLMMGGDGVVDESLEMEPIALSAVQEAMNQM-MGAAATSMSTVFSMR 163 Query: 154 QESSPNLEDFYDIDYLKKNTNRLS---NEFVTTINMNMTIENVASSFVL----------- 199 + SP + +D K + S + + ++ + + L Sbjct: 164 IDISPPAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSKQLIQ 223 Query: 200 --------------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL------- 238 I P + + Q + E + E + Sbjct: 224 KLFSASTTTTESAPIAPTSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQFGQF 283 Query: 239 ----------------NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSAN 280 +V ++ + L +T +++D++ L G +I + N Sbjct: 284 SEVQQEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVDVFVN 343 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKS 310 I + E+ + +N+ +RIT+ +N ++ Sbjct: 344 NTLIATGEVVVIEENFGVRITEIVNTKERL 373 >gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula baltica SH 1] gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment] [Rhodopirellula baltica SH 1] Length = 144 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 41/96 (42%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++ + ++++K S + K ++ ++ + KK L+ ++ L G ++ Sbjct: 42 IQGRMSENATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLT 101 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 F L A G I + E ++G + +R+ + Sbjct: 102 FDVHCDRPLTLRAGGHPIATGETVKIGDKFGLRVRE 137 >gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor lactoaceticus 6A] Length = 375 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 49/351 (13%), Positives = 111/351 (31%), Gaps = 72/351 (20%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85 DK + +I + L + +K+++ I K+ + F Sbjct: 30 DKDVLGEIGNISMGTAATTLSILLNQKVNITTPI----VSILKWEELPKEFPVPYVAIKV 85 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + V + + ++G + E +L LS +++ + + S Sbjct: 86 VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEAMNQMV-GSAS 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200 L+ ++ + +P D + + + + MTI + + S + + Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQL 204 Query: 201 IP------------QETLLKTTLISLSSQNKSENQSED---------------------- 226 IP + TL I +S+Q + E E+ Sbjct: 205 IPVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKEEVPKQPSSQSTKTQKAAPQPFYT 264 Query: 227 ----------------LIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVTL 259 + F + + L+V ++ + L +T +++++ Sbjct: 265 PPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEF 324 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 325 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375 >gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653] Length = 366 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 51/303 (16%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 V I+ + + F +V + + + + ++G Sbjct: 61 VTITTPKVSVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDG 120 Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + ++ + LS V + + + I + L+ ++ SP D Sbjct: 121 KVEEGEITDLHLSAVGEAMNQM-IGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVA 179 Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQ---ETLLKTTLISLSSQNKSENQSEDLIDPF 231 V + M + ++ S + +IP + L+K+ L ++ + +++ Sbjct: 180 FPQGDVVRVAFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQTTTSTSPPAEVKEMKKES 239 Query: 232 ARKTYQ------------------------------------------LNVNIDTRINLK 249 ++ + L+V + + L Sbjct: 240 KGESEEKMASEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELG 299 Query: 250 KTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 KT +KD++ L G +I + ANGK I E+ + +N+ +RITD ++ Sbjct: 300 KTKKLIKDILELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPG 359 Query: 308 QKS 310 ++ Sbjct: 360 KRI 362 >gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42] gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42] Length = 378 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 40/334 (11%), Positives = 93/334 (27%), Gaps = 61/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ VDI+ S S I F + + Sbjct: 42 EIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGFDGSN 101 Query: 96 FIGCSNNLVITLLENLLGASHET-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + ++G P L LS V++ + + + + ++ S Sbjct: 102 LLVVEQSDAAIIADLMIGGDGRGADPSLGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKI 160 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSF--------------- 197 + SP + D+ K ++ + ++ + + + +S Sbjct: 161 DISPPRVELLDVMEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLIADL 220 Query: 198 ------------VLIIPQETLLKTTLI---SLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + PQET Q K E A V Sbjct: 221 MTADQHESEAAETVSEPQETYETPQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAPVEF 280 Query: 243 DTR--------------------------INLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + K ++K+++ L G +I Sbjct: 281 QAFDHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVD 340 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ + Sbjct: 341 ILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 374 >gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium damselae subsp. damselae CIP 102761] gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium damselae subsp. damselae CIP 102761] Length = 321 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL + + + + TL+ + L+ G + ANGK I CEL + + Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVTMRANGKIIGECELVNINER 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGSQE 319 >gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 375 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 49/351 (13%), Positives = 111/351 (31%), Gaps = 72/351 (20%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85 DK + +I + L + +K+++ I K+ + F Sbjct: 30 DKDVLGEIGNISMGTAATTLSILLNQKVNITTPI----VSILKWEELPKEFPVPYVAIKV 85 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + V + + ++G + E +L LS +++ + + S Sbjct: 86 VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEAMNQMV-GSAS 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200 L+ ++ + +P D + + + + MTI + + S + + Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQL 204 Query: 201 IP------------QETLLKTTLISLSSQNKSENQSED---------------------- 226 IP + TL I +S+Q + E E+ Sbjct: 205 IPVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKEEVPKQPSSQSTKTQKAAPQPSYT 264 Query: 227 ----------------LIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVTL 259 + F + + L+V ++ + L +T +++++ Sbjct: 265 PPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEF 324 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 325 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375 >gi|157373222|ref|YP_001471822.1| hypothetical protein Ssed_0081 [Shewanella sediminis HAW-EB3] gi|157315596|gb|ABV34694.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 288 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 67/191 (35%), Gaps = 18/191 (9%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 S T+ + R+ S E +LAK+ + VL P E + L+ Sbjct: 112 GSLATLLKSPLRAPSQSEFRLAKKLMLAALKVL-----------PTAELDENALELELVV 160 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 N + + +E+ + + + + L +S Q + DL + + Sbjct: 161 NSTPIDSPVIWEIAFPVEHKVAPMLFCM-----TEHLLGLMSEQPSQYMATPDLAEKLSY 215 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + Q+ + I + + T + + L++G ++P + ++ + ++ + Sbjct: 216 RLRQIPIKILFELGRQSTPVTSLHGLEVGDILPMNL--HSRCPVTVGKRPLFYAAIHTHD 273 Query: 294 KNYTIRITDRI 304 ++ I Sbjct: 274 GQMVAKLAQDI 284 >gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Bacillus pumilus ATCC 7061] Length = 374 Score = 47.0 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 36/334 (10%), Positives = 100/334 (29%), Gaps = 64/334 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + S + F +S++ Sbjct: 41 EIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVNYTEGFSASN 100 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + SLS + + + Q+ + ++ + Sbjct: 101 LLVVQQTDAAVIADLMMGGDGTN----ADPSLSEIHLSAVQEAMNQMMGSAATSMSTVFN 156 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP-------- 202 + SP + D+ + + E + ++ + I + S+ + + P Sbjct: 157 KKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITFAKDLI 216 Query: 203 ----------------QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNI 242 Q + + + +Q+ Q+ K V Sbjct: 217 AELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNVAPVEF 276 Query: 243 DTRINLKKTT--------------------------LKDVVTLKIGQVIPFLHREKTCAI 276 + + TT +K+V+ L G +I Sbjct: 277 EAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVD 336 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 337 ILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370 >gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor obsidiansis OB47] Length = 375 Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 111/351 (31%), Gaps = 72/351 (20%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85 DK + +I + L + +K+++ + K+ + F Sbjct: 30 DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSVLKWDELPKEFPVPYVAIKV 85 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + V + + ++G + E QL LS +++ + + S Sbjct: 86 VYKEGLDGINLLILKKEDVEIIADLMMGGTGQVEFTEQLTELQLSAIQEAMNQMV-GSAS 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200 L+ ++ + +P D + + + I MTI + + S + + Sbjct: 145 TSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQL 204 Query: 201 IPQ-----------------------------ETLLKTTLISLSSQ-------------- 217 IP ET+ + TL +SQ Sbjct: 205 IPVDFAKQLVDAMFKNTFNASAQAETSAKSHSETVKEETLKQPASQPTNKQKTSPQSYTP 264 Query: 218 -------NKSENQSEDLIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVVTL 259 + N S + F + + L+V ++ + L +T +++++ Sbjct: 265 PPKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEF 324 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 325 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375 >gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum DSM 6946] Length = 286 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 19/235 (8%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152 + + ++ + + +LG ++ L K++ ++ S L + Sbjct: 57 GRMRVTVATSIATAIGDMMLGGEGLEKEEMDAEDLDAT-KEIVSNILSSFSRSLASQKNM 115 Query: 153 TQ-----ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII------ 201 + ES ++ +I++ + N + + + ++S ++ Sbjct: 116 PKLEFDIESVEYIDANSEIEFRGYEKLFIYNLAIHMSHDTIAFA-ISSELTPLVEDMPRM 174 Query: 202 --PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 P+E++ ++ LI S + E + + I RI KK LKDV+++ Sbjct: 175 DTPKESIPESALIEPKKVVPSMSPEEISNIEL---IKDVRLPIRVRIGSKKMLLKDVLSM 231 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IG VI + K I E+ V N+ ++I + I ++ L+ Sbjct: 232 DIGSVIELDQLANDPLEILVGDKVIAMGEVVIVDGNFGVQIGE-IGTKRERLEKL 285 >gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium violaceum ATCC 12472] gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins [Chromobacterium violaceum ATCC 12472] Length = 296 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L V ++ + + TL ++ L V+P + L ANG + EL ++ Sbjct: 222 RLPVRLEFVLQQSEVTLDELRELCRSNVLPLSADAERRVELRANGALLGRGELVQLDGRL 281 Query: 297 TIRITD 302 + + Sbjct: 282 GVEVAQ 287 >gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7] Length = 290 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 26/292 (8%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ +S F +I + + S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISTPYARVMLSAIEKEEGSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 --VLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAITTSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219 L + K + + + + + +E + S ++++ + + + + Sbjct: 121 LNFTTINAEIAKELPKKED-YTKAVVFSFKMEAIKESQIILLTTAAFERQFEKTHKEEKE 179 Query: 220 SENQSEDLIDPFARK---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 +S + + +N+ RI KK LKDVV++ IG V Sbjct: 180 ETIKSTTEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSV 239 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 240 VELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290 >gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1] Length = 149 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 E + S++N+ + I ++ + ++I I T+K+++ L+ G Sbjct: 37 EAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIGTTVITIKELLNLRPGS 96 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 V+ + + ANGK I EL VG+N+ IRI + I +++ Sbjct: 97 VMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEIIEKEER 142 >gi|213023115|ref|ZP_03337562.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 67 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 L ++ LK G V+P I +G + + + G V Y +R+ IN Sbjct: 2 PLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 56 >gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 377 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 74/353 (20%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85 DK + +I + L + +K+ + I K+ + F Sbjct: 30 DKDVLGEIGNISMGTAATTLSILLNQKVSITTPI----VSVLKWDELPKEFPVPYVAIKV 85 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + V + + ++G S E +L LS +++ + + S Sbjct: 86 VYKEGLDGVNLLVLKKEDVEIIADLMMGGSGSIEFSEELSELQLSAIQEAMNQMV-GSAS 144 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNMTIEN-VASSFVLI 200 L+ ++ + SP D + S + + + MTI + + S + + Sbjct: 145 TSLSSMLNLKIDISPPEAFVIDFAQNAEEMIPELKSADEIVKVAFRMTIGDLIDSQIMQL 204 Query: 201 IPQ-------ETLLKTTLISLSSQNKSE-------------------------------- 221 IP +L +TL + S Q KSE Sbjct: 205 IPVDFAKQLVNAMLNSTLSTSSVQEKSELKTSTQESTKTIEKTVKSEQSKKQQTGASLQS 264 Query: 222 -------------NQSEDLIDPFARKTYQ---------LNVNIDTRINLKKT--TLKDVV 257 N S + F + + L+V ++ + L +T +++++ Sbjct: 265 FQPKKEEKSERVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREIL 324 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +++ +RITD +N + Sbjct: 325 EFSTGSIIELDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIVNPSNRL 377 >gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20] Length = 290 Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 96/291 (32%), Gaps = 24/291 (8%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ ++ + + +I V S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEVSNSE-ESWESLISVPYARVVISAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 --VLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTI-NMNMTIENVASSFVLI-------IPQETLLKTTL 211 L + K + + + + M + +L + + Sbjct: 121 LNFTTINAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAVFERQFEKTHQEEKEE 180 Query: 212 ISLSSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 ++++ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 KEETTKSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 240 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 241 ELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290 >gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032] gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032] Length = 374 Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 34/334 (10%), Positives = 103/334 (30%), Gaps = 64/334 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + S + F +S++ Sbjct: 41 EIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVNYTEGFSASN 100 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + SLS + + + Q+ + ++ + Sbjct: 101 LLVVQQTDAAVIADLMMGGDGTN----ADPSLSEIHLSAVQEAMNQMMGSAATSMSTVFN 156 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP-------- 202 + SP + D+ + + E + ++ + I + S+ + + P Sbjct: 157 KKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITFAKDLI 216 Query: 203 ----------------QETLLKTTLISLSSQNKSENQSEDL------------------- 227 Q + + + +Q+ Q+ Sbjct: 217 AELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNVAPVEF 276 Query: 228 ---------IDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAI 276 +++ + + L +T ++K+V+ L G +I Sbjct: 277 EAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLAGEPVD 336 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 337 ILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370 >gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100] Length = 279 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 16/248 (6%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134 S V + S+++ I S L+ + E ++G N L+ E Sbjct: 39 DSMTPPLVSATFSVNN-EMKIKILASAVLMSAIGEWMMG----EEEISKNSELNEDEMDA 93 Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194 AK I I + + + +E + +++ + F N+ I ++ Sbjct: 94 AKEAIQNIISAFSTTLGAQKEIPKMEFSLENCEFVADSLEL--GGFHKLYLYNVKIADLE 151 Query: 195 SSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARK-----TYQLNVNIDTRI 246 L+ + L KT L + + ++ Q + + + I RI Sbjct: 152 EKISLVFDEKIYKILTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRI 211 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 KK LKDV+T+ IG VI + K+I E+ V N+ ++IT+ I Sbjct: 212 GSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVVIVDGNFGVQITE-IGS 270 Query: 307 DQKSLKNF 314 ++ L+ Sbjct: 271 KKERLEQL 278 >gi|134298951|ref|YP_001112447.1| MCP methylation inhibitor CheC [Desulfotomaculum reducens MI-1] gi|134051651|gb|ABO49622.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1] Length = 333 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 33/289 (11%), Positives = 93/289 (32%), Gaps = 28/289 (9%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 +G + + + V I Y + + SF ++ + + Sbjct: 41 EIGNICMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFKEGLNGFN 100 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + + + ++G + + + ++ +E + + Q+ + + Sbjct: 101 VLVINEEEIAIIADIMMGGNGQVTKPVM---ITEMELSASTEAMNQMIGSSATAMADLFG 157 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP-------QE 204 + +P + +T +++ V +TI ++ + + I Q Sbjct: 158 IGIDIAPPKATMVEDLLNASHTPLPTDKPVVVARFEITIGDIIKTTFMQITNVDAARDQA 217 Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ------------LNVNIDTRINLKKTT 252 L + ++N E S++ + +T + V+++ + + T Sbjct: 218 NYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLGKIRCT 277 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 D+ LK G + + L G + EL + I+I+ Sbjct: 278 AGDLAKLKKGDTLAIPFSSQ-QIKLLVGGIPVALGELQTHAEETKIKIS 325 >gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae 12198] Length = 279 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 21/220 (9%) Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ-------CIS--- 151 +L L + ++G E+ + + L + K++ +S LN S Sbjct: 65 DLATALADTMVGGEGESKESVDDDDLDAI-KEINSNIFGALSTSLNSQKKLPKLSFSCKN 123 Query: 152 -TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210 + + +L DF + + NR+ + F+ PQ + + Sbjct: 124 VASITNEQDLSDFARVYDFAFSLNRIKSHFLLLCTKEFEENFSGKKEEASSPQTEEIDSA 183 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 SQ + +N + +N+ RI K+ LKDV ++ IG VI Sbjct: 184 PGQNLSQEEMKNIGM---------LLDVKLNVKVRIGQKRMLLKDVTSMDIGSVIELNQL 234 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + K I E+ V N+ I++T+ Q+ Sbjct: 235 ANEPLEILIDDKVIAKGEVVIVDGNFGIQVTEIGTKRQRL 274 >gi|85707184|ref|ZP_01038271.1| possible flagellar switch protein FliM [Roseovarius sp. 217] gi|85668343|gb|EAQ23217.1| possible flagellar switch protein FliM [Roseovarius sp. 217] Length = 342 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 30/268 (11%), Positives = 78/268 (29%), Gaps = 14/268 (5%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96 S + L ++ L + ++ + + + + + + Sbjct: 31 SPAKALRLALARVADSLFGLGITVATVEQMRLPLAEVAQHVSDEGLLVHLDG-AAGTRGA 89 Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156 + + L+E + R+ + + + I + A + T E Sbjct: 90 LCLDPQFLAGLIEVQTTGAVR-PAVARPRAATRTDAAMVAPLIDAVMAEFDS--QMTAEV 146 Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVT----TINMNMTIENVASSFVLIIPQETLLKTTLI 212 L + L ++ LS + + + + + A + L + + Sbjct: 147 EGYLARGFSFGDLVEDMRALSLVLLAPDYDLLRLTVDLGPGAKTGHLDLLLPVVPLPVRA 206 Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + + P + V +D + + L+DV K G ++P Sbjct: 207 APGVGALGDGSA-----PLDQVVRTAPVVLDAVMGRLRLPLRDVWAFKPGDLVPIPREAL 261 Query: 273 TCAILSA-NGKEIYSCELGRVGKNYTIR 299 L G + +LG++ +R Sbjct: 262 GETQLVGTKGHIVAIAQLGQMNGWRALR 289 >gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 321 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL + + + + TL+ + L+ G + ANGK I CEL + + Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGSQE 319 >gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio harveyi HY01] gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio harveyi HY01] Length = 321 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL + + + + TL+ + L+ G + ANGK I CEL + + Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGSQE 319 >gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12] gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12] Length = 287 Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 20/226 (8%) Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162 LV L + +LG + ++ N L K++A I+ L QE P L + Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPKL-N 122 Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-----------TL 211 F I+ ++ + + +E + S ++++ E + T Sbjct: 123 FTTINAEIAKEFPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKMHKEEKEETT 182 Query: 212 ISLSSQNKSENQSEDLIDPFARKTY-QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + K+ + S + I+ + +N+ RI KK LKDVV++ IG V+ Sbjct: 183 EGATEEVKAHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316 + + K I E+ V N+ I+ITD I ++ L+ H Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287 >gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi] Length = 321 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL + + + + TL+ + L+ G + ANGK I CEL + + Sbjct: 246 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 305 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 306 LGVRVLELFGGSQE 319 >gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC BAA-430] Length = 279 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 19/275 (6%) Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108 + + ++S+ Q GK S S S+ S + L Sbjct: 16 TIEGLLGQTPEVSHIEAQDGKS----DSINPPMAKIDISTDD-GSSLAFFISPKVATALA 70 Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168 + +LG E+ + L K++A IS L +E +I++ Sbjct: 71 DMMLGGEGESKETMEADDLDAT-KEIASNIFGAISTSL----GGQKELPKLSFSISNINF 125 Query: 169 LKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + L N T + N+ F E ++ + N Sbjct: 126 IPDGDLGLGNYSGFYTFSFNIGSVQDYLYFGFSSAFENHFNPNANQALEESSTGNGEAQA 185 Query: 228 IDPFARKTY-------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + + RI KK LKDV+ + IG V+ + + Sbjct: 186 KVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEVLVD 245 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315 K I E+ V N+ I+IT+ I + L + Sbjct: 246 DKVIAKGEVVIVDGNFGIQITE-IAPKKDRLDQLM 279 >gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116] gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116] Length = 322 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL + + + + TL+ + L+ G + ANGK I CEL + + Sbjct: 247 QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMRANGKIIGECELVNINER 306 Query: 296 YTIRITDRINFDQK 309 +R+ + Q+ Sbjct: 307 LGVRVLELFGGSQE 320 >gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P phosphatase fliY) (Flagellar motor switch protein fliY) [NC10 bacterium 'Dutch sediment'] Length = 324 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 91/303 (30%), Gaps = 31/303 (10%) Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-F 83 L + +T+ G L + ++F V + + S ++ V Sbjct: 14 LAEVETVSSALERHGQLVFEASSQVFSVLCGRPVRLRFDRIVPVSPSTLLALLPGPCVGM 73 Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 + + + + I L + +LG LS QI Sbjct: 74 AMQASQGLVGAEHLVWRADDAIGLAQLILGEEPT-----PGSELSADYLDALSEAANQIG 128 Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKK----NTNRLSNEFVTTINMNMTIENV-ASSFV 198 L + +E + R ++T E + + Sbjct: 129 GSLGTALRAALGKPVTVEAGTVTALTEAGVCLAVFREEASTPLLCVASLTREGLASGEVA 188 Query: 199 LII------------PQETLLKTTLISLSSQNKSENQ------SEDLIDPFARKTYQLNV 240 LI+ P L ++S+ + S + + P L+V Sbjct: 189 LIVSPSLLPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDV 248 Query: 241 NIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 N+ + L +T L +D++ L G ++ + + N K I E+ + +N+ + Sbjct: 249 NLQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDENFGV 308 Query: 299 RIT 301 R+T Sbjct: 309 RLT 311 >gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli 95/1000] gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli 95/1000] Length = 348 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L T+KD++ L G +I L NGK I E+ + +N Sbjct: 269 MDVTMNMTVELGRATMTIKDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEN 328 Query: 296 YTIRITDRINFDQKS 310 + +R+TD I+ + Sbjct: 329 FGVRVTDIISPMDRL 343 >gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47] Length = 99 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 38/88 (43%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 ++++K S + K ++ ++ + KK L+ ++ L G ++ F Sbjct: 5 ATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDVHCDRP 64 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITD 302 L A G I + E ++G + +R+ + Sbjct: 65 LTLRAGGHPIATGETVKIGDKFGLRVRE 92 >gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch Maree] gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str. Loch Maree] Length = 386 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + ++ Q P R+ ++ V Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEVKQASF 287 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 288 EPLSIRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC 2916] Length = 386 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + ++ Q P R+ ++ V Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEVKQASF 287 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657] gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf] gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str. 657] Length = 386 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + ++ Q P R+ ++ V Sbjct: 228 AIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEVKQASF 287 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|126176170|ref|YP_001052319.1| hypothetical protein Sbal_3982 [Shewanella baltica OS155] gi|125999375|gb|ABN63450.1| conserved hypothetical protein [Shewanella baltica OS155] Length = 293 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 18/196 (9%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 + T R+ S E +LAK+ + + L T L + Sbjct: 112 GNTSTPLSSPLRNPSQSEFRLAKKLLLSVVDELPNSTIDTNTLEVELIKGH--------- 162 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 + + N ++ + L + L L+ Q K S DL A Sbjct: 163 --MPLTVSAVWSFNFINGSLTPPMLFC-----LTEHLLGHLAEQPKKSEISADLPTKLAV 215 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 L + + + ++ + LK G ++P KT LS ++ + Sbjct: 216 WLKSLPIKMQLTLGQHSIPVQSLSQLKTGDILPINLYPKTL--LSIGNTTLFHASVHSHE 273 Query: 294 KNYTIRITDRINFDQK 309 ++T + +++ Sbjct: 274 GQMVAKLTQDVYQNEE 289 >gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str. Langeland] gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str. Langeland] gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str. 230613] Length = 386 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + ++ Q P R+ ++ V Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMIYEKPIEREAPKVEVKQASF 287 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Dethiobacter alkaliphilus AHT 1] Length = 541 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 100/314 (31%), Gaps = 48/314 (15%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95 +G + +D V+I+ + + + V S Sbjct: 226 EIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVNVRYRTGLSGEN 285 Query: 96 FIGCSNNLVITLLENLLG--ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 + + ++G R LS V + + + + S L + S Sbjct: 286 VLIMGEQDAALIAAVMMGEPTDGPLGELDEIR-LSAVSEAMNQM-MGSSSTALAEMFSRE 343 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIP---------- 202 + +P + ++ + + + ++ + ++ M + ++ S + +IP Sbjct: 344 VDITPPVTEYGNPAE-EADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPLKFAREMAGV 402 Query: 203 ---------------QET--LLKTTLISLSSQNKSENQS-EDLIDPFARK---------- 234 QET +++ L ++ + +D + + + Sbjct: 403 LLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPESTLPEERGLQ 462 Query: 235 ---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + V I + +K LK+++ K G V+ + ANGK + E+ Sbjct: 463 LDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGKLVARGEVVH 522 Query: 292 VGKNYTIRITDRIN 305 + + I+IT+ + Sbjct: 523 YNERFGIKITEIMQ 536 >gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra] gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str. Okra] Length = 386 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + ++ Q P R+ ++ V Sbjct: 228 AIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEIVYEKPIEREAPKVEVKQASF 287 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2] gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580] gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580] gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2] Length = 377 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 35/334 (10%), Positives = 104/334 (31%), Gaps = 61/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + SH+ F + +S N Sbjct: 41 EIGNISFGSSATALSTLLNQKVEITTPTVSVIEKSHLNDEFPHPYVSIGVSYTEGFSGNN 100 Query: 96 FIGCSNNLVITLLENLLGASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + ++G P L LS V++ + + + + ++ S Sbjct: 101 LLVIKQEDAAIIADLMMGGDGTNADPSLGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKI 159 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII------------- 201 + SP D D+ + + + ++ + + ++ S ++ + Sbjct: 160 DISPPEVDLLDVKEGEGTEQIPKEDPLVKVSFRLKVGDLIDSHIMQLYPLTFAKDLIDEL 219 Query: 202 --------------------------PQETLLKTTLISLSSQNKSENQSEDLID------ 229 P +T + + + + + + Sbjct: 220 TNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKVSEPVQVAPAEF 279 Query: 230 -----------PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAI 276 +++ + + L +T ++K+V+ L G +I Sbjct: 280 QSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSIIELDKLAGEPVD 339 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 340 ILVNQRVVAKGEVVVIDENFGVRVTDILSQAERI 373 >gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella aurantiaca DW4/3-1] gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella aurantiaca DW4/3-1] Length = 379 Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 29/255 (11%) Query: 20 RLTGK---LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76 RLT LG++ + ++ + L + ++ DV + ++ Sbjct: 21 RLTRAHVVLGERPQVSRMGQQALQSICESLGR----ELGCDVSAASHVAEAVVVP--AKG 74 Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + VF LS+ + + ++ LE L G P R E LA Sbjct: 75 LSLSAVFVFLELSATGGSAVLELEPPVLFAALERLAGGPAR--PGPMTRLTRLEEASLAY 132 Query: 137 RTIAQISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193 +A + T E ++ + + + + +++ Sbjct: 133 LVLAAL-----MAFRTQGELQRWWGPRLAGMTVNRMDALARLDGRKAHLGVELVLSVGQR 187 Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + L++P L T ++ S A + ++ + ++ Sbjct: 188 TAGARLVLPAVVLESTCRKLPVQRDSSR----------APEILAASLGARCFLGCRQLLP 237 Query: 254 KDVVTLKIGQVIPFL 268 ++ TL +G V+ F Sbjct: 238 SELETLAVGDVVVFE 252 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + L ++ TL+ GQ++P +L + + EL + R Sbjct: 314 VEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGAR 373 Query: 300 I 300 I Sbjct: 374 I 374 >gi|157959917|ref|YP_001499951.1| hypothetical protein Spea_0087 [Shewanella pealeana ATCC 700345] gi|157844917|gb|ABV85416.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345] Length = 293 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 19/178 (10%) Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 GA T RS S E +L KR + L P E D L+ Sbjct: 111 YGAFASTPKSPL-RSPSQSEFRLVKRLMIAAIKRL-----------PITEIDEDALELEL 158 Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231 +N + ++ + + + L + L SQ +++ L + Sbjct: 159 LSNETPIKAPVCCELSFPAAHSGPPMLFFM--SEYLLGLMAELPSQYQADPA---LSEKL 213 Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + Q+ + + + + T+L + L +G V+P + ++ + ++ + Sbjct: 214 AHRLRQIPLRVLLELGHQSTSLTSLQNLAVGDVLPMNL--HSRCPVTVGKRPLFYATV 269 >gi|149916493|ref|ZP_01905010.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b] gi|149809595|gb|EDM69451.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b] Length = 342 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 53/207 (25%), Gaps = 16/207 (7%) Query: 99 CSNNLVITLLEN-LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV----LNQCISTT 153 + ++E +GA RS++ + + + I L Sbjct: 86 LDAQFLAAVIEVQTMGAVQRGDA--PERSVTPTDAAMVAPLMDAILKGYDEYLTSGAEKV 143 Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213 S D + + + I ++ S L++P+ + Sbjct: 144 ARSDWRFGDMVEDARTLALALEMPEYDLFRITADLADGAKTGSLSLLLPRAPRRDPVTSA 203 Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 V +D + L + L G +P Sbjct: 204 RDRAFAGPT--------LEASALNAPVMLDAVLARLSMPLNKLCALTPGMQLPVPREALN 255 Query: 274 CAILSANGKEIYS-CELGRVGKNYTIR 299 A L G+ + + LG++ +R Sbjct: 256 KAELLGAGQHLVAPVRLGQLNGWRAVR 282 >gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides] gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides] Length = 152 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 3/142 (2%) Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227 + + +I T+ L P+ L + + ++ L Sbjct: 10 DRSRRVRPSAAGPAPSIRGGGTLPPRTFLLTLT-PRA--LPPFPTGARMTDATRPLADRL 66 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 R + V + + + T++D++ L G V+ + NG I Sbjct: 67 GAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKG 126 Query: 288 ELGRVGKNYTIRITDRINFDQK 309 E+ VG+ + IR I +++ Sbjct: 127 EVVMVGERFGIRFGQIIEPEKR 148 >gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella chejuensis KCTC 2396] gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella chejuensis KCTC 2396] Length = 252 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 12/159 (7%) Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 ++ ++NQ +S ES D +++ L S +I AS +L Sbjct: 99 VARLVNQALSELAESW-GAADPVEMESLAYAQEYASGWIQVSI-----AWPSASIVLLWS 152 Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P K + + + ++ R +L+ + R+N + T+ +V +L+ Sbjct: 153 P-----KVVEKHFPAGAEFNRGALKPLESLLRSCGELSAKLSVRLNSVELTINEVTSLQA 207 Query: 262 GQVIPFLHREKTCAILSANGKEI-YSCELGRVGKNYTIR 299 G VI H+ A++ + + LG +++ Sbjct: 208 GDVIKLDHKLTEPALVFTQDGALRFRASLGECEGRKSVK 246 >gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei DM98] Length = 182 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 84 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 142 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 143 VTIRANGQPFGRGELIQVGEQLAVEVK 169 >gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC 51449] gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449] Length = 278 Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 16/205 (7%) Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE-DFY 164 L + +LG E ++ + L + K+++ +S LN Q P L Sbjct: 69 ALADMMLGGEGEVKSEMSDDDLDAI-KEISSNIFGAVSTSLNS-----QNELPKLNFTCS 122 Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE--TLLKTTLISLSSQNKSEN 222 +I+++ +N + F N T++++ S+F ++ + L + S + Sbjct: 123 NIEFITENMDLSR--FDKAYIFNFTLDSIQSNFTILANKSFVELFEGGNTSAQAAPAESA 180 Query: 223 QSEDLIDPFARK-----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + +N+ RI K+ LKDV+ + IG VI + Sbjct: 181 AQTNPALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEI 240 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 + K I E+ V N+ I+ITD Sbjct: 241 LVDDKVIAKGEVVIVDGNFGIQITD 265 >gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911] Length = 408 Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 71/197 (36%), Gaps = 4/197 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + F + +S + Sbjct: 44 EIGNISFGSSATALSTLLNQKVEITTPTVSVILKRKLQEEFPHPYVAIQVSYTEGFSGSN 103 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG L LS V++ + + + + ++ S Sbjct: 104 LLVIKQSDAAIIADLMLGGDGLNPADLLGEIQLSAVQEAMNQM-MGSAATSMSTIFSKRV 162 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLIS 213 + SP DF D+ + ++ + ++ + I + + SS + ++P E + Sbjct: 163 DISPPSIDFLDVQQGEGTDRIPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRLVEEL 222 Query: 214 LSSQNKSENQSEDLIDP 230 ++ ++EN + DL P Sbjct: 223 MNPGAQAENPAADLSKP 239 Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 26/193 (13%), Positives = 63/193 (32%), Gaps = 14/193 (7%) Query: 132 KKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 + AKR + ++ Q + + S P+ + + + + + Sbjct: 212 LEFAKRLVEELMNPGAQAENPAADLSKPDPVQAQEPAFHQPPAEPVPDMAAAPPGYGQGT 271 Query: 191 ENVASSFVLII-PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ----------LN 239 + P L + + + F + Q L+ Sbjct: 272 AQYSGMETQTQRPAAQAAPQHLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNLNMLLD 331 Query: 240 VNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + L +T ++KD++ L G +I + N + I E+ + +N+ Sbjct: 332 IPLQVTVELGRTKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVIEENFG 391 Query: 298 IRITDRINFDQKS 310 +R+TD I+ + Sbjct: 392 VRVTDIISQSDRI 404 >gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei BCC215] Length = 335 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 237 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 295 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 296 VTIRANGQPFGRGELIQVGEQLAVEVK 322 >gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 398 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 68/188 (36%), Gaps = 7/188 (3%) Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF---YDIDYLKKNTNRLSNEFVTTI 184 S + + + + I ++L + + +E+ + K + T I Sbjct: 209 SEIMQIIPMEAVENIMSILLGSTAEESSAEAVMEEPLVGMPLPETKAAAVAAPRQAETAI 268 Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244 + E + + P+E + Q +S L P ++V +D Sbjct: 269 SPPPQ-EPIYGQAFVQSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLI-MDVPLDV 326 Query: 245 RINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + L KT T+ +++ L G +I L NGK I E+ + +NY IRIT Sbjct: 327 SVELGKTKKTIGEILELNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITT 386 Query: 303 RINFDQKS 310 I+ + Sbjct: 387 IISPIDRM 394 >gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20] gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20] Length = 331 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T++ + +G V+P Sbjct: 233 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAP-GE 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 292 VTIRANGRPFGRGELIQVGEQLAVEVK 318 >gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 305] Length = 331 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 233 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 292 VTIRANGQPFGRGELIQVGEQLAVEVK 318 >gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei B7210] gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei S13] Length = 327 Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 229 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 287 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 288 VTIRANGQPFGRGELIQVGEQLAVEVK 314 >gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 23344] gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia mallei GB8 horse 4] gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 10399] gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH] gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU] gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 23344] gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH] gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU] gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC 10399] gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia mallei GB8 horse 4] Length = 327 Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T++ + +G V+P Sbjct: 229 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAP-GE 287 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 288 VTIRANGRPFGRGELIQVGEQLAVEVK 314 >gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 14] Length = 213 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 116 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEV 174 Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 175 TIRANGQPFGRGELIQVGEQLAVEVK 200 >gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1] Length = 164 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 Q + +E I + + +N++ + +++++ L G V+ Sbjct: 51 PAEAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELD 110 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + NGK I EL VG+ + +RIT+ + ++KS+ Sbjct: 111 RETTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERKSV 153 >gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 668] Length = 323 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 225 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 283 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 284 VTIRANGQPFGRGELIQVGEQLAVEVK 310 >gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106a] gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pasteur 52237] gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1106b] Length = 323 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 225 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 283 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 284 VTIRANGQPFGRGELIQVGEQLAVEVK 310 >gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola sp. JR] gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermincola potens JR] Length = 412 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K T+++++ L G V+ L NGK + E+ + + Sbjct: 333 IMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAKGEVVVIDE 392 Query: 295 NYTIRITDRINF 306 N+ IRITD ++ Sbjct: 393 NFGIRITDIVSP 404 >gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130] Length = 171 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 7/95 (7%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 +S ++ + D + ++V + + + D++ L IG + R Sbjct: 40 DVSPAASRSPVSPKRDATNSLWSIPLDVDV----VLGHARLPVSDLMNLSIGDTLSLDRR 95 Query: 271 EKTCAILSANGKEIYS---CELGRVGKNYTIRITD 302 + ANG I C + G+ + +R+T Sbjct: 96 IGDPVEIVANGTTIAWGQLCAVDESGERFGVRLTK 130 >gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 104 Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 32/86 (37%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + ++L + V + + T+ +V+ L+ G +I NG Sbjct: 8 DPKKELSWMDYSGILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNG 67 Query: 282 KEIYSCELGRVGKNYTIRITDRINFD 307 + + E+ KN IRI + ++ Sbjct: 68 RILGKGEVMVYEKNLAIRINEVLDSS 93 >gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 322 Score = 45.0 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYSRVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 91] Length = 233 Score = 45.0 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 135 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 193 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 194 VTIRANGQPFGRGELIQVGEQLAVEVK 220 >gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM 14863] Length = 126 Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +V ++ + L + +L++++ + G V+ L NG+ + E+ +G+N Sbjct: 50 ADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGEN 109 Query: 296 YTIRITDRINFD 307 Y IRIT+ IN + Sbjct: 110 YGIRITELINPE 121 >gi|260427005|ref|ZP_05780984.1| surface presentation of antigens protein [Citreicella sp. SE45] gi|260421497|gb|EEX14748.1| surface presentation of antigens protein [Citreicella sp. SE45] Length = 355 Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 59/189 (31%), Gaps = 13/189 (6%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS----TTQESSPNLEDFYDIDYLKKNT 173 T + R ++ + + + L + + Q + + Sbjct: 81 TQMPVEERPITQTDAAMMAPLVDGTLDRLERYLEGHPLRPQFAGFRFGAMVEDARTAGLL 140 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 + +++++ + + +L++P + + +E+ P R Sbjct: 141 LDAAGYRAFNVSVDLALGRRKGTILLVLP--------DRPDAGKADAEDGDAATPGPHER 192 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRV 292 K L V +D + L L+ G +IP ++ G + LG++ Sbjct: 193 KMKLLPVRMDAVLCSLTIPLSAAQRLRAGDLIPLPPEALDSVEFVAGAGPAVAGGRLGQM 252 Query: 293 GKNYTIRIT 301 +R++ Sbjct: 253 NGMRAVRLS 261 >gi|56695927|ref|YP_166278.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3] gi|56677664|gb|AAV94330.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3] Length = 388 Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 63/196 (32%), Gaps = 21/196 (10%) Query: 124 NRSLSTVEKKLAKRTIA--------QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 R+ + + + I + L++ T E E + L + Sbjct: 114 ERAFTGTDAAMVAPLIDALLPRARDMVDQPLDRVCLTGYEFCARAESRRALLLLLEYDRY 173 Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 V + + LI+P + ++ + Q L F Sbjct: 174 R----VFDLTAEIAGGKAQGQITLILPD----RPEAALEGAEGAAAPQGLHLDAAFG--- 222 Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294 + ++D I+ + L ++ G ++P + I++ G+++ LG+ Sbjct: 223 -VVRADLDAVISRIRLPLAAFAGMQPGDLLPLVGLKLDRTEIVTIEGRQVALARLGQCRG 281 Query: 295 NYTIRITDRINFDQKS 310 +R+ +++ ++ Sbjct: 282 MRAVRLNEKLPDPERI 297 >gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411] Length = 329 Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 33/291 (11%) Query: 18 LARLTGKLGDKKT--------IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69 + L G + K I + S L L + ++ K L+V + + Sbjct: 11 IDSLLGGNAEDKQKDNTYGDAINENVSKLFDLLNSSIEEVTKTAFSLEVVSKFIDLNIIQ 70 Query: 70 FSHIIHSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128 + I SF V + + +S F + + L + +L E +L + L Sbjct: 71 KNEI--SFDGKIVINVDVTTGEKNSKFVVLINKKFASILSDLMLMGPGEAKEELESEDLD 128 Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY---------LKKNTNRLSNE 179 + K+L + +S + + IS ++ + N+ Sbjct: 129 AL-KELFSQIFGHLSTQVKEAISPFISFEVKEATKEPLEIDSDKLYKSQYDVAIPNIEND 187 Query: 180 FVTTINMNMTIENVASSFVLIIPQETLL--------KTTLISLSSQNKSENQSEDLIDPF 231 + I+ + ++ + F PQE + K L + + L P Sbjct: 188 LIDIISPKIELDEI---FKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATLEAPK 244 Query: 232 ARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 +++++ RI K +KD++ LK G +I + + NG Sbjct: 245 NLNLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295 >gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori HPKX_438_AG0C1] Length = 290 Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 93/289 (32%), Gaps = 24/289 (8%) Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99 L + + + ++ +S F +I + S S Sbjct: 10 QEVVSTLEGLVGKAPSVGLEKEISSSD-ESFLKLISAPYARVKISAIEKEESSIELLAPV 68 Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159 LV L + +LG + ++ N L K++A I+ L QE P Sbjct: 69 --VLVTALSDLMLGGEGASKEEMDNDDLDAF-KEMASNIFGAIATSLKS-----QELLPK 120 Query: 160 LEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSFVLI-------IPQETLLKTTL 211 L + K + + + M + +L + + Sbjct: 121 LNFTTINAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTTAFEHQFEKTHQEEKEE 180 Query: 212 ISLSSQNKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 ++Q+ +E + + +N+ RI KK LKDVV++ IG V+ Sbjct: 181 KEETTQSTAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVV 240 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + + K I E+ V N+ I+ITD I ++ L+ Sbjct: 241 ELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQL 288 >gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH] gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia profundicola AmH] Length = 103 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V ++ + TL++++ L+ G VI E A + NG+ I E+ K Sbjct: 21 LLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYEK 80 Query: 295 NYTIRITDRINFDQ 308 N IR+ + ++ +Q Sbjct: 81 NLAIRLNEVLDANQ 94 >gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM 1251] gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas denitrificans DSM 1251] Length = 111 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 38/101 (37%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 +K + ++ + + +L + V + + + ++ +++ LK G +I Sbjct: 1 MKKRRHTYGAKEEIFDSESELSWMDYSGLLDMEVEFISDLGETELSVGEILQLKKGSIID 60 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 NG+ + E+ KN IRI + ++ Sbjct: 61 LKKPAGESVETYVNGRILGRGEVMVYEKNLAIRINEVLDSS 101 >gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium yellowstonense SS-5] Length = 173 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I I K +++++ L VI L NG + EL +V Sbjct: 89 LLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD 148 Query: 295 NYTIRITDRINFDQK 309 N+ I+IT+ + +++ Sbjct: 149 NFAIKITEILTKEER 163 >gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 322 Score = 45.0 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 322 Score = 44.6 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 7894] Length = 264 Score = 44.6 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 166 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 224 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 225 VTIRANGQPFGRGELIQVGEQLAVEVK 251 >gi|153847524|ref|ZP_01993940.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus AQ3810] gi|149744726|gb|EDM56194.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus AQ3810] Length = 237 Score = 44.6 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%) Query: 114 ASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172 +T+ +L +R E+ +A T + + L + IS + D + Sbjct: 6 GDTQTLVKLADRFYGANTERSVATLTASDLR--LQERISRI-----IIGWLAPQDMWEAC 58 Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232 + +N+T E S L + L++T + L Q+ DL +PF Sbjct: 59 EYEAPRGIGLCVQLNITFEGYQGSMYLKL-DTHLIQTLIEQLELQS-----DVDLYEPFC 112 Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 R V ++ ++ K L DVV+LK ++P Sbjct: 113 RSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPI 147 >gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10229] gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10247] gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei 2002721280] gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC 10247] gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei 2002721280] gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC 10229] Length = 335 Score = 44.6 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S + S ++ P A L V ++ ++ ++ T++ + +G V+P Sbjct: 238 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAP-GEV 296 Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 297 TIRANGRPFGRGELIQVGEQLAVEVK 322 >gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D str. 1873] Length = 394 Score = 44.6 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 106/331 (32%), Gaps = 61/331 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + + V+I+ S + ++F+ S Sbjct: 61 EIGNISMGSASTALSTIIGNVVNITTPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGN 120 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + ++G + L+ +E+ + Q+ + + S Sbjct: 121 LLVMKIPDAAVIANLMMGGDGRIEEKSE---LTEIEESAVSEAMNQMIGSAATSMATMFS 177 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP + + + N+ + ++ +TI ++ S+ + I P +T K Sbjct: 178 REVNISPPVYKIWKDTSMPLCETIKENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIV 237 Query: 211 LISLSSQNKSE--NQSEDLIDPFARKTYQ------------------------------- 237 I + + K E QS + + Q Sbjct: 238 SIMMGQEEKGEAVEQSSNKTQQINKMQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFA 297 Query: 238 -----------------LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILS 278 L+V ++ + L KT ++KD++ L G +I + + Sbjct: 298 PLQESNINGAPQNIDLILDVPLEISVVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIY 357 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 NGK+I E+ V +N+ +RI + ++ +++ Sbjct: 358 VNGKKIAYGEVVVVDENFGVRIVNIVSGEER 388 >gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei Pakistan 9] Length = 327 Score = 44.6 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 230 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEV 288 Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 289 TIRANGQPFGRGELIQVGEQLAVEVK 314 >gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus JW 200] Length = 375 Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 94/310 (30%), Gaps = 58/310 (18%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 V I+ + + F +V + + V+ + + ++G Sbjct: 63 VTITTPKVSVLSWEELKKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEG 122 Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + ++ + LS + + + + I + L+ ++ T SP D Sbjct: 123 KVEDGEITDLHLSAIGEAMNQM-IGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDIS 181 Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIP--------QETL-------------------- 206 V I M + + S + ++P Q L Sbjct: 182 FPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVI 241 Query: 207 ------------------------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 K + + Q+ E+ S L+V + Sbjct: 242 IENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPL 301 Query: 243 DTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L KT +KD++ L G +I + ANGK I E+ + +N+ +RI Sbjct: 302 TITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRI 361 Query: 301 TDRINFDQKS 310 D ++ ++ Sbjct: 362 IDIVHQSKRI 371 >gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 322 Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 322 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 322 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 322 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermodesulfobium narugense DSM 14796] Length = 386 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + K TLKDV+ L+ G VI + N + I E+ + Sbjct: 306 ENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVVVI 365 Query: 293 GKNYTIRITDRINFDQKS 310 +N+ IRIT+ I+ ++ Sbjct: 366 DENFGIRITEIISPRERL 383 >gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 322 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1] Length = 254 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 71/238 (29%), Gaps = 27/238 (11%) Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130 + + V + S + + E L GA T Sbjct: 33 GDPLPAAGAPAVIATLSAETSMQVMLAVSDP-----IAEALEGAEGMTPV---------- 77 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 + L A + + + T +++ E D+ ++ + Sbjct: 78 -QALVPALEAAAATLATGVLENTSQANAA-EQLAAGDWTSATLEAENSVEGWLSVREIAA 135 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRIN 247 ++ P S+ +Q+ + A Y + + + I Sbjct: 136 GAAGAAGAAGAP-------KKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIG 188 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 K + DV+ L G VI + A + NG+ I E+ V + Y IRIT+ ++ Sbjct: 189 RTKLAVHDVLDLSPGSVIELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 246 >gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei 9] Length = 294 Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 197 SHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEV 255 Query: 276 ILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 256 TIRANGQPFGRGELIQVGEQLAVEVK 281 >gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 322 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 322 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 3502] gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC 19397] gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall] gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str. ATCC 3502] gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str. ATCC 19397] gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str. Hall] gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str. Kyoto] Length = 386 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 43/334 (12%), Positives = 100/334 (29%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEIKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARK----------- 234 I + ++ Q P R+ Sbjct: 228 AIMMGEESMDEPSVENNSSQASTVEEKKPTKAVEAPKQEIVYEKPIEREAPKVEIKQASF 287 Query: 235 ------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + I + K +KD++ L G +I + Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 322 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ + + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans SRS30216] Length = 249 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 8/169 (4%) Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198 + + L + + + D ++ V I+ + + Sbjct: 86 VDALRPALETVVHALGQCTLEAGVEGDPAQALSQI---ADGAVAVIDAGGETLALIGLTL 142 Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258 P T + S + R Q++V ++ + T++D++ Sbjct: 143 TAQPDTT--PAPMPSFAPAGTPAPAGPRRTMDLLRDV-QMDVTVE--LGRTSMTVQDLLA 197 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 L G V+ + A + NG+ I E+ V ++Y IRIT+ + + Sbjct: 198 LTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITEIVTPE 246 >gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT] gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain [Clostridium novyi NT] Length = 396 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 46/334 (13%), Positives = 109/334 (32%), Gaps = 64/334 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + + V+I+ + + +F+ S Sbjct: 60 EIGNISMGSASTALSTIIASAVNITTPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGN 119 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + ++G + + L+ +E+ + Q+ + + Sbjct: 120 LLVMKIPDAAVIANLMMGGDGKIEEKSE---LTEIEESAVSEAMNQMIGSAATSMATMFG 176 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP + + L + + E + ++ +TI ++ S+ + I+P +T K Sbjct: 177 REVNISPPISKIWKDAALPLSESISEEEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIV 236 Query: 211 LISLSSQNKSE-----------------NQSEDLIDPFARKTY----------------- 236 I + + + N++ IDP +TY Sbjct: 237 SIMMGEEEEDMQLNPKVEERPVNIKSDLNKAPQQIDPKPAETYTQPQNSVPQSQVSVQRA 296 Query: 237 -------------------QLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCA 275 L+V ++ + L KT ++K+V+ L G +I + Sbjct: 297 NFAPLDQNPISGVPQNIDLILDVPLEISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPV 356 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NGK+I E+ V +N+ +RI ++ +++ Sbjct: 357 EIYVNGKKIAYGEVVVVDENFGVRIVSIVSGEER 390 >gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 42/351 (11%), Positives = 97/351 (27%), Gaps = 71/351 (20%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQ 85 DK + +I + L + +K+++ + K+ + F Sbjct: 30 DKDVLGEIGNISMGTAATTLSILLNQKVNITTPV----VSVLKWDELPKEFPVPYVAIKV 85 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRT---IA 140 + V + + ++G + E QL LS +++ + + Sbjct: 86 VYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEQLTELQLSAIQEAMNQMVGSAST 145 Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200 +S++LN I + ++ + + + R M + + LI Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205 Query: 201 -----------------------------------------------------IPQETLL 207 +PQ Sbjct: 206 PVDFAKQLVDAMLRNTLGTSDGQAEVAAQAYHEPVKEEALKQPVSQPTNKQKTLPQSHTQ 265 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKT--TLKDVVTL 259 + D + L+V ++ + L +T +++++ Sbjct: 266 PPKKEQPQKVYNVSPVQFESFDEEEERKYPENIELILDVPLEITVELGRTQKLVREILEF 325 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NGK I E+ + +N+ +RITD +N + Sbjct: 326 STGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376 >gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2] Length = 432 Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 12/201 (5%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ VDI+ + + F + + Sbjct: 50 EIGNISFGSSATALSTLLNQKVDITTPAVSVVLRQKLAEEFPHPYVAIQVNYTEGFFGSN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNR-SLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG +L LS V++ + + + + ++ Sbjct: 110 LLVIQQSDAAIIADLMLGGDGTNPAELMGEIQLSAVQEAMNQM-MGSAATSMSTIFGKKV 168 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP-------QETL 206 + SP D D+ + +++ + I+ + I + + S+ + ++P L Sbjct: 169 DISPPAIDILDLPQGEGADRVPADDMLIRISFRLKIGSLIDSNIMQLLPLEFGKSLVNEL 228 Query: 207 LKT-TLISLSSQNKSENQSED 226 L + S ENQ+ Sbjct: 229 LNPGQDLPADSAVSGENQAAQ 249 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ + + L +T ++K+++ L G +I + N + I E+ + +N Sbjct: 354 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGEVVVIDEN 413 Query: 296 YTIRITDRINFDQKS 310 + +R+TD I+ + Sbjct: 414 FGVRVTDIISQSDRI 428 >gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum acetoxidans DSM 771] Length = 128 Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + T+++V+ L G +I +S N ++ E+ + Sbjct: 44 IEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVIND 103 Query: 295 NYTIRIT---DRINFDQK 309 NY IRIT +F+++ Sbjct: 104 NYGIRITSVFKPHSFEKE 121 >gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus 82-40] gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp. fetus 82-40] Length = 101 Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + T+K+++ L++G VI L N + E+ Sbjct: 16 DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVMVY 75 Query: 293 GKNYTIRITDRINFD---QKSLKNFL 315 KN IRI + ++ Q + L Sbjct: 76 EKNLAIRINEILDSKSVIQYFKRELL 101 >gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16] Length = 248 Score = 44.3 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 S+ +Q+ + A Y + + + I K + DV+ L G VI Sbjct: 141 PKKEGESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 200 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + A + NG+ I E+ V + Y IRIT+ ++ Sbjct: 201 ELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 240 >gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 322 Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E I ++ + FV+ +P +L T + ++ L P + Sbjct: 179 EIGMGIRIHCFGDVRIGCFVIQLPGRIYARVLLTEDNMMKFDELVQDIETLLAQEGPILK 238 Query: 234 KTYQLNVNID-------TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + NG+ I Sbjct: 239 SDIASSVELEQLPQSVLFEIGRASVEIGQLRQLKAGDVLPVGGCFAPEVTIRLNGRVIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp. YO3AOP1] Length = 194 Score = 44.3 bits (103), Expect = 0.023, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K ++++++ L VI L NG + EL +V Sbjct: 110 LLDIPITITVEVGSKSMSIEEILKLAPSSVIDLDKYLNEPIDLKVNGVLVAKGELYQVDD 169 Query: 295 NYTIRITDRINFDQK 309 N+ I+IT+ + +++ Sbjct: 170 NFAIKITEILTKEER 184 >gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 322 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|255022968|ref|ZP_05294954.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL J1-208] Length = 115 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 40/103 (38%) Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256 + +P ++ + + + ++ + ++ +Q+ R+ KTT K++ Sbjct: 1 MRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKEL 60 Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 L++G V+ + K + C +G+ G ++ Sbjct: 61 NKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 103 >gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM 17241] Length = 446 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 2/109 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTL 259 PQ K + + + Q D A + V++D + + +T +KD++ Sbjct: 328 PQPATQKPINVQNTQFPQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDF 387 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G VI + + NG+ + ++ + N+ +RIT+ + + Sbjct: 388 GQGTVIELNKQAGAPVDIVVNGRLLARGDVVVIDDNFGVRITEIVGTKE 436 >gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 101 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 3/86 (3%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + T+K+++ L++G VI L N + E+ Sbjct: 16 DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVVVY 75 Query: 293 GKNYTIRITDRINFD---QKSLKNFL 315 KN IRI + ++ Q + L Sbjct: 76 EKNLAIRINEILDSKSVIQYFKRELL 101 >gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073] Length = 124 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 31/77 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + + + + + T+K+++ LK G VI L N + E+ + Sbjct: 45 KRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVI 104 Query: 293 GKNYTIRITDRINFDQK 309 + +RI +++ Sbjct: 105 NDAFGVRINSLAAVEEE 121 >gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 322 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ + + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|83717892|ref|YP_438371.1| hypothetical protein BTH_II0169 [Burkholderia thailandensis E264] gi|83651717|gb|ABC35781.1| conserved hypothetical protein [Burkholderia thailandensis E264] Length = 319 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 55/180 (30%), Gaps = 16/180 (8%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R +++ + + I + + + Sbjct: 149 PPIPE----TTTERRLAERLAGELARTVARAI------PFDAPPDDETPPPPDGGHARRA 198 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + + + SS +++ + + P + +L Sbjct: 199 HLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVRRERSLP----STRL 254 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + ++ DV+ L+ G V+P A + + ++++ + + Sbjct: 255 RLKLTAQLMEMSVPFGDVLRLRPGTVLPVRL--HAPARVMTHDAQLFTASIAEHNGKLCL 312 >gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 576] Length = 323 Score = 44.3 bits (103), Expect = 0.024, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 225 ASHDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 283 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 284 VTIRANGRPFGRGELIQVGEQLAVEVK 310 >gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 502 Score = 44.3 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 80/249 (32%), Gaps = 24/249 (9%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + + L+ +E + Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN-MNMTIE 191 + Q+ + +++ + T + SP +F + N + V I + + Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFPLEVEGL 373 Query: 192 NVASSFVLIIPQET------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN------ 239 + + P +L ++++ ++ ++ P K Sbjct: 374 LKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSEMEAILE 433 Query: 240 ---VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 V ++ K L+ ++ VI L NG I L RV ++ Sbjct: 434 AIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVNDHF 493 Query: 297 TIRITDRIN 305 I++T+ + Sbjct: 494 GIQMTELVR 502 >gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis BI429] Length = 370 Score = 44.3 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ ++ + L K TLK V+ L +G +I + NGK I E+ + +N Sbjct: 292 LDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPVDIIVNGKLIARGEVVVIDEN 351 Query: 296 YTIRITDRINFDQKSL 311 + +RIT+ ++ ++ Sbjct: 352 FGVRITEIVSPQERFY 367 >gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10] gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris MCS10] Length = 99 Score = 44.3 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 37/93 (39%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +++++ + +++ + + V I + K ++ + + G VIP E Sbjct: 2 AKHQARDDDPQVLECDVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQV 61 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 + AN I ++ G + IT + ++ Sbjct: 62 WILANNHPIARGDVVIQGDRIAVSITGPADANE 94 >gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 375 Score = 44.3 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 95/310 (30%), Gaps = 58/310 (18%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 V I+ + + F ++ + + V+ + + ++G Sbjct: 63 VTITTPKVSVLSWEELKKEFNIPYIGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEG 122 Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + ++ + LS + + + + I + L+ ++ T SP D Sbjct: 123 KVEDGEITDLHLSAIGEAMNQM-IGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDIS 181 Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIP--------QETLLK--TTLISLSSQNKSENQS 224 V I M + + S + ++P Q L K ++ Q +S N Sbjct: 182 FPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVI 241 Query: 225 EDLIDPFARK------------------------------------------TYQLNVNI 242 + + L+V + Sbjct: 242 IENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPL 301 Query: 243 DTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L KT +KD++ L G +I + ANGK I E+ + +N+ +RI Sbjct: 302 TITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRI 361 Query: 301 TDRINFDQKS 310 D ++ ++ Sbjct: 362 IDIVHQSKRI 371 >gi|167614817|ref|ZP_02383452.1| hypothetical protein BthaB_00940 [Burkholderia thailandensis Bt4] gi|257141402|ref|ZP_05589664.1| hypothetical protein BthaA_19664 [Burkholderia thailandensis E264] Length = 298 Score = 44.3 bits (103), Expect = 0.025, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 55/180 (30%), Gaps = 16/180 (8%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R +++ + + I + + + Sbjct: 128 PPIPE----TTTERRLAERLAGELARTVARAI------PFDAPPDDETPPPPDGGHARRA 177 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + + + SS +++ + + P + +L Sbjct: 178 HLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVRRERSLP----STRL 233 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + ++ DV+ L+ G V+P A + + ++++ + + Sbjct: 234 RLKLTAQLMEMSVPFGDVLRLRPGTVLPVRL--HAPARVMTHDAQLFTASIAEHNGKLCL 291 >gi|167576642|ref|ZP_02369516.1| hypothetical protein BthaT_00820 [Burkholderia thailandensis TXDOH] Length = 297 Score = 44.3 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 54/180 (30%), Gaps = 17/180 (9%) Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178 P +T E++LA+R +++ + + I P + Sbjct: 128 PPIPE----TTTERRLAERLAGELARTVARAI-------PFDARPDGETPPPDGGHARRT 176 Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + + + SS +++ + + P + +L Sbjct: 177 HLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVRRERSLP----STRL 232 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + ++ DV+ L+ G V+P A + + ++++ + + Sbjct: 233 RLKLTAQLMEMSVPFGDVLRLRPGTVLPVRL--HAPARVMTHDAQLFTASIAEHNGKLCL 290 >gi|283784012|ref|YP_003363877.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] gi|282947466|emb|CBG87013.1| lateral flagellar C-ring switch protein [Citrobacter rodentium ICC168] Length = 288 Score = 44.3 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 72/238 (30%), Gaps = 45/238 (18%) Query: 93 SNFFIGCSNNLVITLLENLLG---------ASHETIPQLYNRSLSTVEKKLAKRTIAQ-- 141 + +L++TLL N G + + R S + + + Sbjct: 76 GHLAFDIDRSLLLTLLGNFYGLDASLTEINSQDNLPTKTETRLKSRLAMDIGALIFNKNT 135 Query: 142 --ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 + L ST Q F D + +++ + ++L Sbjct: 136 SGVPLALKLDSSTVQTHWAYQLTFVLGDNEDGG-------------FRILLDDAHTDYIL 182 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259 + + + + + + + + + ++ V I ++ D+ T+ Sbjct: 183 NLIRRSEHNQGKPAADKAAVAVEKKKLVKEIIHTLPLKMQVK----IAELPLSVADLATI 238 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317 + G ++PF + S E+++ + + D+ D+ L + K Sbjct: 239 RPGDILPFTLPDSFPV--SIGKSELFT----------ALIVEDK---DKLFLSELMSK 281 >gi|91795009|ref|YP_564660.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217] gi|91717011|gb|ABE56937.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217] Length = 293 Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 18/196 (9%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 S + R S E +L KR + VL +E + ++ + Sbjct: 112 GSQKNPLSSPLRQPSQSEFRLIKRLFINVFEVLP--FEELDLEELEIELVKNHATIEAD- 168 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 V + A + +LL + + S DL A Sbjct: 169 ------AVWALEFTQGSLAPALHIYMA---SSLLGLVQDMPNQK----PISTDLPTKLAN 215 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 Q+ V + + + + + +K G ++P K+ +L+ K ++S + Sbjct: 216 WLTQMPVKLRLTLGHQDIPVDSIDQMKAGDILPINLYPKS--VLAVGTKALFSATVHSHD 273 Query: 294 KNYTIRITDRINFDQK 309 ++T N + Sbjct: 274 GQMLAKLTQDTNHYED 289 >gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 216 Score = 44.3 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 73 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 132 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ + + + LK G V+P + N + I Sbjct: 133 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 192 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 193 GELIACGNEFMVRIT 207 >gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 322 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 45/135 (33%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P ++ Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ + + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio acetiphilus DSM 12809] Length = 95 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 +ID + K +++++ + G ++ F NGK + E+ + + + +RI Sbjct: 17 DIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMVLDERFAVRI 76 Query: 301 TDRINFDQ--KSLKNFLHK 317 T+ + + + KN +++ Sbjct: 77 TEILEKEDLTEMYKNGMYR 95 >gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449] gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC 51449] Length = 117 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 E++L I + + + ED++ + + + + K L +++ + G Sbjct: 4 ESILDKQRIHSAKEIELATYLEDMMKNY-TGLLDMEALFNAELGSTKIPLGEILRFEKGS 62 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +I + NG+ I E+ +N IRI + ++ + Sbjct: 63 IIDLGKPAGESVEIFINGRVIGKGEVMVYERNLAIRINEILDSN 106 >gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM 10542] Length = 247 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Y + + + I K ++ V+ L G VI + A L NG+ I E+ + + Sbjct: 171 LYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVVVIDE 230 Query: 295 NYTIRITDRIN 305 +Y +RIT+ ++ Sbjct: 231 DYGLRITEIVD 241 >gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402 065] Length = 386 Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 101/334 (30%), Gaps = 62/334 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQASLSSWSSNF 95 +G + ++ V+I+ + +SF+ N S Sbjct: 50 EVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSGIVGEN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + ++G + ++ LS +E + Q+ + + + Sbjct: 110 LLVMKIDDASVISNLMMGGNGIVEGEVKE--LSEIEISAVSEAMNQMIGSAATSMATMFA 167 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP L + +E V ++ ++ I + SS + ++P +T K Sbjct: 168 REVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKTAKKIV 227 Query: 211 LI-------------------------SLSSQNKSENQSEDLIDPFARKTYQLNV----- 240 I + ++ Q P R+ ++ V Sbjct: 228 AIMMGEESMDEPSVENNSTQASTVEEKKPAKVVEAPKQEMVYEKPIEREAPKVEVKQASF 287 Query: 241 ------------------------NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 I + K +KD++ L G +I + Sbjct: 288 EPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVE 347 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK++ E+ V +N+ +RIT ++ ++ Sbjct: 348 IQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381 >gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489] Length = 284 Score = 43.9 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 28/258 (10%) Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH-----------ETIPQLY 123 S K + + +N + S + L + +LG + ++ Sbjct: 38 ESIKAPIARIDIATDN-DANLALFISPKVATALADMMLGGEGTAKDTMDNDDLDATKEIT 96 Query: 124 NRSLSTVEKKL-AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE--F 180 + + L A++ + ++S L T++S LE+F N + + F Sbjct: 97 SNIFGAISTSLGAQKELPKLSFTLKNIQFITEDSELGLENFSGFYTFAFNLGSIQDFLYF 156 Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQ 237 + + + + + ++Q ++E + +L + + Sbjct: 157 AFSSSFEKSFNPNTTEDS---------DNVALDANTQTEAEEEKFELNNAGLKNIAMLLD 207 Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + RI KK LKDV+ + IG V+ + + K I E+ V N+ Sbjct: 208 VRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVDGNFG 267 Query: 298 IRITDRINFDQKSLKNFL 315 I+IT+ I + ++ + Sbjct: 268 IQITE-IAPKKDRIEQLM 284 >gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans DSM 574] Length = 131 Score = 43.9 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 5/103 (4%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 T+ K L S S L + + I + L++V+ L +G Sbjct: 23 ATVKKVRFPPLDSFRPERTISTSLS-----HLADVQITISAELGETTLKLREVLNLDVGS 77 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 VI + N ++ E+ V ++ +RI I Sbjct: 78 VIDLNKSAGDAINIYFNDRKAAKGEVIVVNDSFAVRINSIIPP 120 >gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila] Length = 125 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 Q+ V + + + +L +++ ++ G VI + NG+ + E+ V Sbjct: 47 RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGEPLDVRVNGRLLAKGEVVVVNGK 106 Query: 296 YTIRITDRINFD 307 Y +R+ D I+ + Sbjct: 107 YGLRLVDVIDTN 118 >gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88] gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88] Length = 416 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + ++I + K +K+++ L G +I + + NGK + E+ + + Sbjct: 335 IMDVPLDISVVLGRTKLNIKEILNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDE 394 Query: 295 NYTIRITDRINFDQKS 310 N+ +RITD +N +K Sbjct: 395 NFGVRITDIVNNVEKI 410 >gi|293408350|ref|ZP_06652189.1| predicted protein [Escherichia coli B354] gi|291471528|gb|EFF14011.1| predicted protein [Escherichia coli B354] Length = 283 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKDHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 416 Score = 43.9 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 S S S Q + +D Q+ V + + + +++ K G V+ Sbjct: 316 AQFSSFDSLAMSNIQVPENMDLIKDVMLQITVELGKTVK----PINEILDFKPGSVLELD 371 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANGK+I + E+ + +NY IRITD + D++ Sbjct: 372 KVVGESLDILANGKKIATGEVVVIDENYGIRITDIVKPDKRL 413 >gi|120597291|ref|YP_961865.1| hypothetical protein Sputw3181_0460 [Shewanella sp. W3-18-1] gi|146294564|ref|YP_001184988.1| hypothetical protein Sputcn32_3479 [Shewanella putrefaciens CN-32] gi|120557384|gb|ABM23311.1| conserved hypothetical protein [Shewanella sp. W3-18-1] gi|145566254|gb|ABP77189.1| conserved hypothetical protein [Shewanella putrefaciens CN-32] Length = 293 Score = 43.9 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 58/191 (30%), Gaps = 20/191 (10%) Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 +LA +S LN + +S L L ++L N + T + + + Sbjct: 105 QLASNYYGSMSTPLNSPLRDPSQSEFRLARKL----LLSVVDKLPNNTIDTSALEVELIK 160 Query: 193 VASSFVL-------------IIPQE-TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 + P L + L L+ Q K S DL A L Sbjct: 161 GQMELAVSAVWSFNFSQESQTPPMLFCLTEHLLGHLAEQPKKSEVSADLPAKLAIWLKNL 220 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 V I + + + L G ++P KT LS ++ + Sbjct: 221 PVKIQVTLGQHNIPVHSLGQLNTGDILPINLYPKTL--LSIGSTPLFHATVHSHEGLMVA 278 Query: 299 RITDRINFDQK 309 ++T + ++ Sbjct: 279 KLTQDVYQYEE 289 >gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710b] gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710b] gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1710a] Length = 319 Score = 43.9 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 223 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 281 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 282 IRANGQPFGRGELIQVGEQLAVEVK 306 >gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 112] Length = 215 Score = 43.9 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 119 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 177 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 178 IRANGQPFGRGELIQVGEQLAVEVK 202 >gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. Fw109-5] gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. Fw109-5] Length = 334 Score = 43.9 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 8/113 (7%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 ++ A L++P L + + ++ + QL V ++ + Sbjct: 225 LDGGAGPRALVLPGGARLSGRHEDGTFHVEEIEMTQRMA--------QLPVVLEVELARV 276 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + TL ++ L+ G ++P + L A + + EL V +RI D Sbjct: 277 EVTLAELARLEPGGILPLALDRRGLVTLRAGERAVARGELVDVDGAVGVRIID 329 >gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 368 Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 71/215 (33%), Gaps = 26/215 (12%) Query: 114 ASHETIPQLYNRSLSTV-----EKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDI 166 P + ++ S + ++ ++ ++ S QE E Sbjct: 152 GRQNLSPVIGDQPDSRIMVVNYTMRIKDMVESEFIECISAAAIDSLAQEIQARQEAQARA 211 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET-LLKTTLISLSSQNKSENQSE 225 ++ R + E ++ + ++ P ++ ++ + N + Sbjct: 212 RQEEEEAARQAREMEKSVIVGQGAGRGQAT-----PAAGRMMDGAAPAVPGLSWGGNAAA 266 Query: 226 DLIDPFARKTYQL-----------NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREK 272 P Y+ +V ++ + + KT LKDV+ G V+ + Sbjct: 267 ARTQPGQDTMYRSPAISGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQAD 326 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + NG+ I E+ + N+ +RIT+ +N Sbjct: 327 APVDIIVNGQLIARGEVVVIDDNFGVRITEIVNTR 361 >gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermosediminibacter oceani DSM 16646] Length = 362 Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 96/322 (29%), Gaps = 58/322 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + + V I+ + + F+ + Sbjct: 39 EIGNISIGTSATTLYTLLRNKVTITTPDVALTTVEKLQEKYSIPFIAIIVDHTEGIEGSS 98 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA------KRTIAQISAVLNQC 149 + + + ++G + E +L+ + + + L+ Sbjct: 99 ILIMKEEDAKIIADLMMGGDGRNTEVELD------ELRLSAVGEAMNQMMGSSATSLSTM 152 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLI--IPQETL 206 + SP + + +E + I+ M + + + S +L+ IP Sbjct: 153 LKKNINISPPTLKRVNFADETLQSYFKKDEKIVKISFKMEVGDLIESEIMLLMTIPFAKK 212 Query: 207 LKTTLISLSSQNKSENQSEDLID-------------PFARK------------------- 234 L L+S+S E D D PF K Sbjct: 213 LVRELMSISKGIPFETSKSDDTDEHILENAPPEPQKPFNEKKAEKVSVKPVELEDFGEAE 272 Query: 235 --------TYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++V ++ + L +T +K+++ + G +I + NGK I Sbjct: 273 TSGKKSSLDLIMDVPLEISVELGRTVKKIKEILEIGPGSIIELEKLAGEPVDILVNGKLI 332 Query: 285 YSCELGRVGKNYTIRITDRINF 306 E+ + +++ +RIT+ +N Sbjct: 333 ARGEVVVIDESFGVRITEILNS 354 >gi|254459518|ref|ZP_05072934.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083] gi|206676107|gb|EDZ40594.1| conserved hypothetical protein [Rhodobacteraceae bacterium HTCC2083] Length = 351 Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 90/283 (31%), Gaps = 16/283 (5%) Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFS 84 D K + + S + L + + L + ++ + ++ E+ +F Sbjct: 4 SDAKAPDDQTVSPATAARVSLARAADQAFSLALRVNSIRQSRLDLADVVDQIDEDWALFP 63 Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144 S + +I +E + R L+ +K LA + Sbjct: 64 LLH--DDGSVGVMCLEPACIIAFVETQTMG-RVSAAVAQPRRLTQTDKALAVAFLEGFLR 120 Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----FVLI 200 ++ + + + ++ L + +M IE V + L Sbjct: 121 RFDEALKGAPTAYWTRGYRTEDAVATRHMVVLQLDGAEYRGFDMQIEVVEAERPINMRLF 180 Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDP---FARKTYQLNVNIDTRINLKKTTLKDVV 257 +P +K +++ K L++ R NV +D + L ++ Sbjct: 181 LP----IKEKFAKQNAKKKPTKTGVALLESEHTIRRSAMAANVEMDAIMCKVMLPLSELN 236 Query: 258 TLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIR 299 TL+ G ++P L ++G+ S LG++ ++ Sbjct: 237 TLQPGHLVPLPQDAAKQVHLVDSSGRSAQSVRLGQLHGMRAVK 279 >gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH] gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH] Length = 270 Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 83/225 (36%), Gaps = 10/225 (4%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 + L + +L +L + L + K I+ + L + Sbjct: 52 KGEILFLIPAEIATALGDLMLAGEGTPKTELNDDDLDAI-----KEIISNVFGALKTTLG 106 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 Q++ PNL DF + + +E+ INM + +V ++ + Sbjct: 107 A-QDNMPNL-DFEIANVFAVDKEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNP 164 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLH 269 + S + + +++ +L L++ + R+ + LKDV+ + IG ++ Sbjct: 165 STKSEGSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQ 224 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 K + K+I E+ V N+ I+IT I ++ L + Sbjct: 225 LAKEPLDILIEDKKIGEGEVVIVDGNFGIQIT-SIGSREERLNSL 268 >gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis TXDOH] Length = 320 Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + P A L V ++ + ++ T+ + G V+P Sbjct: 224 DSPATAGAAPDASPPAFDIDALPVTLEFVLQDERVTVAQLARCHPGLVLPLRGVP-GEVT 282 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG + + Sbjct: 283 IRANGQPFGIGELIQVGDQLAVEVK 307 >gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 275 Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P + Sbjct: 132 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 191 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 192 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 251 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 252 GELIACGNEFMVRIT 266 >gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC 35243] gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC 35239] Length = 248 Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 S+ +Q+ + A Y + + + I K + DV+ L G VI Sbjct: 141 PKKEGESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVI 200 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + A + NG+ I E+ V + Y IRIT+ ++ Sbjct: 201 ELDRSAGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVS 240 >gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM 16294] Length = 294 Score = 43.5 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 95/264 (35%), Gaps = 29/264 (10%) Query: 73 IIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS-LSTV 130 II + V + +S ++ I NL +L + ++G + +R +S Sbjct: 36 IISNIVPPIVLVKIKVSGDVDADAMIALPPNLAASLSDMMMG------EEASDREDVSED 89 Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 + AK ++ I ++ +S +E +I+ + + F + Sbjct: 90 DLDAAKEIVSNIFGAISNTLSAQKELPVLSFSIENIELVGDDDEVSLEAFSRMYVYKFNL 149 Query: 191 ENVASSFVLIIPQE--TLLKTTLISLSSQNKSENQSEDLIDP-----------FARK--- 234 E+V S + II ++ +L + S S EN+S + + Sbjct: 150 ESVHSLLMFIIDEKLKNVLFPSDTSSESAEIEENRSTAAASSHISSNCEEDITLSNEEMK 209 Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 + + + RI K+ LKDV+ + IG VI + + + E+ Sbjct: 210 NIALIMDVKLPVRVRIGKKRMLLKDVLNMDIGSVIELNQLANDPLEILVDNHVVAQGEVV 269 Query: 291 RVGKNYTIRITDRINFDQKSLKNF 314 V N+ I++T I ++ L Sbjct: 270 IVDGNFGIQVT-TIGTKKERLTQL 292 >gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 406e] Length = 319 Score = 43.5 bits (101), Expect = 0.040, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 223 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 281 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 282 IRANGQPFGRGELIQVGEQLAVEVK 306 >gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ethanoligenens harbinense YUAN-3] Length = 374 Score = 43.5 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 35/75 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ +++ + + +++++ +G +I + + NG+ I E+ + + Sbjct: 299 IQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEVVVIDE 358 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I K Sbjct: 359 NFGVRITEIIGKQSK 373 >gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM 14863] gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 227 Score = 43.5 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + + + + + L +++++ G VI + NG + E+ Sbjct: 145 ALRGVLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEV 204 Query: 290 GRVGKNYTIRITD 302 +G+ Y IRI + Sbjct: 205 IAIGEKYGIRIVE 217 >gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633] Length = 105 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 ++SL++ K + + + V I + K + + + G VIP Sbjct: 4 IVSLTAYGKGHAPDSNSDAHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAA 63 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 E + AN I E+ G + ITD + Sbjct: 64 EHDEVWILANNHPIARGEIIIQGDRVAVSITDAAD 98 >gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740] gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 117 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + K TL +++ + G +I NG+ I E+ K Sbjct: 34 LLDMEVIFTAELGATKITLAEILKFEKGSIIDLQKPAGESVETFVNGRIIGKGEVMVYEK 93 Query: 295 NYTIRITDRINFD 307 N IRI + ++ + Sbjct: 94 NLAIRINEILDSN 106 >gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 322 Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P + Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 322 Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P + Sbjct: 179 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 238 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 239 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 298 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 299 GELIACGNEFMVRIT 313 >gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 309 Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 88/297 (29%), Gaps = 49/297 (16%) Query: 62 YTSCQSGK--FSHIIHS-FKENFVFSQASL---------SSWSSNFFIGCSNNLVITLLE 109 +C+ GK S + + + I L+ Sbjct: 20 LAACEVGKDEASEALSRALGNPMTLAVGEAGAYSAAVAPEEAGLAIVLKVDLEAAIVLIP 79 Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169 G + + T E KLA +L + +I Sbjct: 80 ASSGLLPDWYAEPDA----TGESKLATLAQELGMLLLPEEF---MPLDFKAGKIENIRAG 132 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL-- 227 K + +++ +T EN +S +L+ P + + Q ++ D Sbjct: 133 LKKAGCT--DAAACVSLPLTGENGSSEALLVWPAPQADAIFKSTAAPQQPTDTPKNDPNL 190 Query: 228 --------------------------IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 + +A+ ++ + ++ + KK ++++ L I Sbjct: 191 AVEVKPAPAPTPATPPPRTEPVGQRNLPHYAKSLLKIAIEVNVTLASKKMRVREITELGI 250 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318 G +I F + L I E ++G + +R+T+ + +++ + +R Sbjct: 251 GSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGDKFGMRVTNVLLPEERFISIKGKRR 307 >gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 244 Score = 43.1 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P + Sbjct: 101 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 160 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 161 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQ 220 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 221 GELIACGNEFMVRIT 235 >gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] Length = 151 Score = 43.1 bits (100), Expect = 0.049, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPF-ARKTYQLNVNIDTRINLKKTTLKDVVTL 259 +P ++ + ++ + NQ D +Q+ + + ++ +++ Sbjct: 38 LPTAQIIALPDLHAGAEGDAANQGGDASILKDWNPLHQIKARLQVCVGAVSLSVGELLGA 97 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 K QV+ L+ GK + +L V ++ +RIT+ Sbjct: 98 KEHQVLRLDREIDHPVDLTIEGKVVARGQLVAVDGHFAVRITE 140 >gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 315 Score = 43.1 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 47/107 (43%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P+E + + + + I +K + +++ RI ++KDV++ K Sbjct: 209 PKEAVSVQEVAFPEFKYTPLQYDREQIGDDKKKLLDITLDVSVRIGSTVCSVKDVLSFKE 268 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 GQV+ + + A + ANG+ I ++ G ++ RI + + + Sbjct: 269 GQVLVLDKQAGSPADVVANGELIGRGDVLVSGDHFGARIIEIVGKRE 315 >gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 502 Score = 43.1 bits (100), Expect = 0.051, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 81/249 (32%), Gaps = 24/249 (9%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + + L+ +E + Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN-MNMTIE 191 + Q+ + +++ + T + SP +F + N + V I + + Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFPLEVEGL 373 Query: 192 NVASSFVLIIPQET------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN------ 239 + + P +L ++++ ++ ++ P K Sbjct: 374 LKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSEMEAILE 433 Query: 240 ---VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 V ++ K L+ ++ VI +L NG I L RV ++ Sbjct: 434 DIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILVRVDDHF 493 Query: 297 TIRITDRIN 305 I++T+ + Sbjct: 494 GIQMTELVR 502 >gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427] gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium lentocellum DSM 5427] Length = 403 Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V+++ + L +T+ +K+++ G +I + NGK + + E+ + +N Sbjct: 329 MDVSLEVSVELGRTSRKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDEN 388 Query: 296 YTIRITDRINFDQKS 310 + IRITD IN + + Sbjct: 389 FGIRITDIINPEDRI 403 >gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein [Legionella drancourtii LLAP12] gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein [Legionella drancourtii LLAP12] Length = 101 Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V RI T+ ++ LK GQ + + + N + I EL Sbjct: 31 VGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHED 90 Query: 295 NYTIRITD 302 ++ ++IT+ Sbjct: 91 HFAVQITE 98 >gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis Bt4] gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis E264] Length = 320 Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + + + P A L V ++ + ++ T+ + G V+P Sbjct: 224 DSPATADAPPDASPPAFDIDALPVTLEFVLQDERVTVAQLAGCHPGLVLPLRGVP-GEVT 282 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG + + Sbjct: 283 IRANGQPFGIGELIQVGDQLAVEVK 307 >gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei NCTC 13177] Length = 260 Score = 43.1 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 164 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 222 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 223 IRANGQPFGRGELIQVGEQLAVEVK 247 >gi|323191518|gb|EFZ76779.1| lateral flagellar export/assembly protein [Escherichia coli RN587/1] Length = 283 Score = 43.1 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 75/247 (30%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSMPLTLNVKIAELSLNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella aurantiaca DW4/3-1] Length = 342 Score = 43.1 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 22/234 (9%) Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97 +G + + + ++ DV + ++ + VF LS+ + + Sbjct: 1 MGQQALQSICESLGRELGCDVSAASHVAEAVVVP--AKGLSLSAVFVFLELSATGGSAVL 58 Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES- 156 ++ LE L G P R E LA +A + T E Sbjct: 59 ELEPPVLFAALERLAGGPAR--PGPMTRLTRLEEASLAYLVLAAL-----MAFRTQGELQ 111 Query: 157 --SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214 ++ + + + + +++ + L++P L T Sbjct: 112 RWWGPRLAGMTVNRMDALARLDGRKAHLGVELVLSVGQRTAGARLVLPAVVLESTCRKLP 171 Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 ++ S A + ++ + ++ ++ TL +G V+ F Sbjct: 172 VQRDSSR----------APEILAASLGARCFLGCRQLLPSELETLAVGDVVVFE 215 Score = 36.2 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + L ++ TL+ GQ++P +L + + EL + R Sbjct: 277 VEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGAR 336 Query: 300 I 300 I Sbjct: 337 I 337 >gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630] gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile QCD-63q42] gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC 43255] gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile] Length = 124 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L + + I K TL+D++ L G +I + + K + ++ V Sbjct: 43 QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVV 102 Query: 293 GKNYTIRITDRINFDQ 308 N+ ++IT ++ + Sbjct: 103 DLNFGVKITSIVSEED 118 >gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018] Length = 289 Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Y + + + R+ K LKD++ +G++I + NG +I E V Sbjct: 209 LYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVEG 268 Query: 295 NYTIRITDRINFD 307 + ++I IN D Sbjct: 269 KFGLKIKRIINED 281 >gi|327254533|gb|EGE66149.1| lateral flagellar export/assembly protein [Escherichia coli STEC_7v] Length = 283 Score = 43.1 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SRFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia pseudomallei 1655] Length = 335 Score = 43.1 bits (100), Expect = 0.056, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 +S + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 237 ASHDTSHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GE 295 Query: 275 AILSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 296 VTIRANGRPFGCGELIQVGEQLAVEVK 322 >gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus silvestris StLB046] Length = 422 Score = 43.1 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 66/196 (33%), Gaps = 12/196 (6%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + + VDI+ S + + F +V Q + S Sbjct: 50 EVGNISFGSSATALSSLLGQKVDITTPSISMINRNRLEQEFPHPYVAVQVEYTTGLSGMN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRS-LSTVEKKLAKRTIAQI----SAVLNQCI 150 + + + + +LG + R LS ++ + + Q+ + ++ Sbjct: 110 LLVIKQSDAAIIADLMLGGDG-----INPRPELSEIQLSAVQEAMNQMMGSAATSMSTVF 164 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209 + + SP D +I + ++E + I+ + I + S+ + ++P + K Sbjct: 165 NQKVDISPPTIDLLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKI 224 Query: 210 TLISLSSQNKSENQSE 225 + ++ + Sbjct: 225 VKSLMGETDEPLTATT 240 Score = 35.8 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ + + L +T ++K+++ L G +I + N + I E+ + +N Sbjct: 344 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDEN 403 Query: 296 YTIRITDRINFDQKS 310 + +RITD ++ + Sbjct: 404 FGVRITDILSQADRL 418 >gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium populi BJ001] gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium populi BJ001] Length = 101 Score = 43.1 bits (100), Expect = 0.057, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L V++ + L ++ + G VI E + AN I ++ G Sbjct: 6 ELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGNRI 65 Query: 297 TIRITDRINF 306 ++ +T+ I Sbjct: 66 SVEVTELIRK 75 >gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium DG1235] Length = 82 Score = 43.1 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + ++ + +++V+ L G VI K L N K I E+ V Sbjct: 11 LMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAYGEVVVVED 70 Query: 295 NYTIRITDRIN 305 N+ I+IT+ N Sbjct: 71 NFGIKITEMAN 81 >gi|212637765|ref|YP_002314290.1| hypothetical protein swp_5088 [Shewanella piezotolerans WP3] gi|212559249|gb|ACJ31703.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 308 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 18/196 (9%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 S + + R+ S E +L KR + L T E L NT Sbjct: 127 GSFTSAAKSPLRAPSQSEFRLVKRLMLAAINTLPVADIDTDELELELI---------TNT 177 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 + +N + F + + L ++ Q DL D A+ Sbjct: 178 TPIKAPVCCELNFPIAHIGPGIRFY-------MAEYLLGLMAEQPSQYQADPDLNDKLAK 230 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 QL + + + + + LK+G ++P + ++ + I+ + Sbjct: 231 SLKQLPFRVMLELGQQSIPVTGLQQLKVGDILPMNL--HSRCPVTVGKRPIFYATVHAHE 288 Query: 294 KNYTIRITDRINFDQK 309 ++T ++ Sbjct: 289 GQMVAKLTQEAFQTEE 304 >gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22] Length = 288 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 Y + + + R+ K LKD++ +G++I + NG +I E V Sbjct: 208 LYNVKLKLSVRLGTKIVLLKDILRWDVGEIIELEQMVNEPLEILINGVKIGEGEAVIVEG 267 Query: 295 NYTIRITDRINFD 307 + ++I IN D Sbjct: 268 KFGLKIKRIINED 280 >gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15] gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000] gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15] gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000] Length = 103 Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 F + +NV I + ++ ++ + G VIP + + AN I E+ Sbjct: 20 FVSQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQ 79 Query: 291 RVGKNYTIRITDRIN 305 I++T + Sbjct: 80 ISDDRIAIQVTRAAD 94 >gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 354 Score = 43.1 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ I + LKDV+ G V+ + + NG+ I E+ + Sbjct: 275 IMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD 334 Query: 295 NYTIRITDRINFD 307 N+ +RI++ +N Sbjct: 335 NFGVRISEIVNAR 347 >gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida subsp. salmonicida A449] Length = 125 Score = 42.7 bits (99), Expect = 0.064, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 Q+ V + + + +L +++ ++ G VI + NG+ + E+ V Sbjct: 47 RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGK 106 Query: 296 YTIRITDRINFD 307 Y +R+ D I+ + Sbjct: 107 YGLRLVDVIDTN 118 >gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium extorquens PA1] gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens AM1] gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens DM4] gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium extorquens PA1] gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium chloromethanicum CM4] gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens AM1] gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium extorquens DM4] Length = 101 Score = 42.7 bits (99), Expect = 0.065, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L V++ + L ++ + G VI E + AN I ++ G Sbjct: 6 ELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGNRI 65 Query: 297 TIRITDRINF 306 ++ +T+ I Sbjct: 66 SVEVTELIRK 75 >gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum sp. MED92] Length = 144 Score = 42.7 bits (99), Expect = 0.067, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 206 LLKTTLISLSSQNKSENQS--EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 LL T ++ S E Q + DP + V + + + +++ L G Sbjct: 34 LLAATGVTGDSVELDELQDEGTPVSDPKLDVILDIPVTLSMEVGQTDIPISNLLQLNQGS 93 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 VI + NG I E+ V Y IR+TD I+ ++ + Sbjct: 94 VIELDRVAGEPLDVMVNGTLIAHGEVVVVNDRYGIRLTDVISPQERIKR 142 >gi|323975947|gb|EGB71041.1| lfiM protein [Escherichia coli TW10509] Length = 283 Score = 42.7 bits (99), Expect = 0.068, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SRFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQVKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT 98-5491] gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT 98-5491] Length = 119 Score = 42.7 bits (99), Expect = 0.068, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + K L +++ + G +I + NG+ + E+ K Sbjct: 33 LLDMKVAFHAELGSAKIPLLEILRFEKGSIIDLQKPAGESVEIYINGRIVGKGEVMVYEK 92 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 93 NLAIRVNEILDSN 105 >gi|170680472|ref|YP_001742354.1| lateral flagellar export/assembly protein LfiM [Escherichia coli SMS-3-5] gi|300936107|ref|ZP_07151047.1| surface presentation of antigens protein [Escherichia coli MS 21-1] gi|170518190|gb|ACB16368.1| lateral flagellar export/assembly protein LfiM [Escherichia coli SMS-3-5] gi|300458727|gb|EFK22220.1| surface presentation of antigens protein [Escherichia coli MS 21-1] Length = 283 Score = 42.7 bits (99), Expect = 0.069, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Magnetospirillum magnetotacticum MS-1] Length = 101 Score = 42.7 bits (99), Expect = 0.071, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +L V++ + L ++ + G VI E + AN I ++ G Sbjct: 6 ELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGNRI 65 Query: 297 TIRITDRINF 306 ++ +T+ I Sbjct: 66 SVEVTELIRK 75 >gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis MSMB43] Length = 168 Score = 42.7 bits (99), Expect = 0.073, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Query: 206 LLKTTLISLSSQNKSENQSEDL---IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 L + + E + D P A L V ++ ++ ++ T+ + G Sbjct: 58 LTEPAVDDPHDDLHDEPTTADALPDASPQAFDVAALPVTLEFVLHDERVTVAQLAGCHPG 117 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 V+P + ANG EL +VG+ + + Sbjct: 118 LVLPLRGAP-GEVTIRANGLPFGRGELIQVGEQLAVEVK 155 >gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia acanthamoebae str. Hall's coccus] Length = 462 Score = 42.7 bits (99), Expect = 0.074, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 A + + I + + T+K +V L+ G ++ + L NGK + EL Sbjct: 388 QTAPSIDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGEL 447 Query: 290 GRVGKNYTIRITD 302 +G +R+ + Sbjct: 448 LSIGDALGVRVLE 460 >gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-C] Length = 324 Score = 42.7 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 68/253 (26%), Gaps = 39/253 (15%) Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL------------------ 127 L + + LV+ L++ + G P + Sbjct: 66 IDLPALPGTAILEVEPALVVRLVDRMAGGDGGPAPAAALTPVEATALELLALAALDGACG 125 Query: 128 -STVEKKLAKRTI-------AQISAVLNQCISTTQESSPNLEDFY---------DIDYLK 170 + VE++LA R ++ L + + L D+D Sbjct: 126 VAEVEERLAPRLARATAEPAGALALELEIAAGQARGHARLLVPPAAVRALRGPADLDRRV 185 Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDL 227 L + V+ P ++ L + + E + Sbjct: 186 PVPGSLRRGTAALTAAELDALEPGDVLVVDPPADGRDALALPGGLRALGRIDGEGFHVEE 245 Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + R QL V ++ + L +V L+ G V+ + L + + Sbjct: 246 TEMIERH-AQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARG 304 Query: 288 ELGRVGKNYTIRI 300 EL V +RI Sbjct: 305 ELVDVEGAVGVRI 317 >gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM 1740] gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes] Length = 289 Score = 42.7 bits (99), Expect = 0.075, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 14/235 (5%) Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151 S L L + +LG E+ ++ + K++A IS L+ Sbjct: 55 SGKIAFLVPPALGTALADLMLGGEGESREEMSEDDVDAT-KEIASNIFGAISTALSAQKE 113 Query: 152 TTQ-ESSPNLEDFYDIDYLKKNTNRLSNEFVT---TINMNMTIENVASSFVLIIPQETLL 207 + +P DF + ++ F TI + + +S + P+ Sbjct: 114 LPKLNFAPEKADFVQGGSIDLSSFEKIFTFSFSLNTIRSELYLAVDSSFVKIFEPKSAPS 173 Query: 208 KTTLISLSSQNKSENQSE-----DLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTL 259 + S + +L +P + + + + RI KK LKDV+++ Sbjct: 174 ASASSYSESGSSFGGSYSGAPNVNLSEPEMKNIGMLLDVKLQVKVRIGQKKMLLKDVISM 233 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 IG V+ + + K I E+ V N+ I+IT+ I ++ L+ Sbjct: 234 DIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQITE-IGTKRERLEQL 287 >gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia pseudomallei MSHR346] Length = 319 Score = 42.7 bits (99), Expect = 0.076, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + S ++ P A L V ++ ++ ++ T+ + G V+P Sbjct: 223 HDASHDEPTAAHAPPAFDIDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAP-GEVT 281 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 282 IRANGRPFGRGELIQVGEQLAVEVK 306 >gi|306813323|ref|ZP_07447516.1| Lateral flagellar export/assembly protein Flagellar motor switch C-ring (FliM-like) [Escherichia coli NC101] gi|305854086|gb|EFM54525.1| Lateral flagellar export/assembly protein Flagellar motor switch C-ring (FliM-like) [Escherichia coli NC101] Length = 283 Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 414] Length = 102 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDS 91 >gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514] gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter sp. X513] gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514] gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X561] gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter sp. X513] Length = 375 Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVI 265 K + + Q+ E + + L+V + + L KT +KD++ L G +I Sbjct: 267 KVNVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKKLIKDILELSEGSII 326 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANGK I E+ + +N+ +RITD ++ ++ Sbjct: 327 ELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHQSKRI 371 >gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 375 Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 94/310 (30%), Gaps = 58/310 (18%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116 V I+ + + F +V + + V+ + ++G Sbjct: 63 VTITTPKVSVLSWEELKKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTNLMMGGEG 122 Query: 117 E-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175 + ++ + LS + + + + I + L+ ++ T SP D Sbjct: 123 KVEDGEITDLHLSAIGEAMNQM-IGSAATSLSTLLNKTINISPPKAFIVDFTASLPTDIS 181 Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIP--------QETLLK--TTLISLSSQNKSENQS 224 V I M + + S + ++P Q L K ++ Q +S N Sbjct: 182 FPEGDVVKIAFKMEVGEIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVI 241 Query: 225 EDLIDPFARK------------------------------------------TYQLNVNI 242 + + L+V + Sbjct: 242 IENDEKIVETANNISPGGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPL 301 Query: 243 DTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L KT +KD++ L G +I + ANGK I E+ + +N+ +RI Sbjct: 302 TITVELGKTKKLIKDILELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRI 361 Query: 301 TDRINFDQKS 310 D ++ ++ Sbjct: 362 IDIVHQSKRI 371 >gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5] gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5] Length = 112 Score = 42.7 bits (99), Expect = 0.082, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V ++ + TL +++ + IG VI K + NGK I EL + Sbjct: 41 DIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGELVIIDGKI 100 Query: 297 TIRITDRINFDQ 308 ++I + + + Sbjct: 101 GVKIKEVVKEQR 112 >gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831] Length = 389 Score = 42.3 bits (98), Expect = 0.082, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 59/170 (34%), Gaps = 8/170 (4%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNF 95 +G + ++ V+I+ S + + + I + E + +S Sbjct: 45 EIGNISFGSSATTLSTLLNQKVEITTPSVEVIEKADIDNEVTFEPVSVQVNYIDGFSGKN 104 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + +LG T + L+ + + T+ Q+ +ST + Sbjct: 105 VFVIKARDAAIIADIMLGGDGTTPDET----LNDIHLSAVQETMNQMMGAAATSMSTVFD 160 Query: 156 SSPNLEDFYDIDYLKKNTN--RLSNEFVTTINMNMTIEN-VASSFVLIIP 202 ++ I+ ++ N N + + +T+ N + S+ + +IP Sbjct: 161 MKVDISPPEIINGIEDNANTVVFDEDVYVKVFFRLTVGNLIDSNMMQLIP 210 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVI 265 T + S +S S+ L+V + + L +T ++ D++ L G +I Sbjct: 283 PTVQEAAFSNFESPTLSKQEHRNL---DMLLDVPLKVTVELGRTKQSISDILDLSAGSII 339 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K + E+ + +N+ +R+TD I+ + Sbjct: 340 ELDKLAGEPVDILVNEKLVAEGEVVVIEENFGVRVTDIISQTDRI 384 >gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas stutzeri DSM 4166] Length = 279 Score = 42.3 bits (98), Expect = 0.086, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 77/263 (29%), Gaps = 28/263 (10%) Query: 44 KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103 + + F ++++++ Q + S L Sbjct: 44 RLIGDYFLRNYRINLELNRIDVQEERGEE-----------PDCIYRSAMGKVGFSIDRAL 92 Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 + LE G I +ST E+++ R + + S + E F Sbjct: 93 LTEALECYYGG--TVIASQDTPPISTSEQRMRNRL----GMDITDIFAR---SILSGETF 143 Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223 +D + + S E+V I SS L L T L+ + + Sbjct: 144 GKLDSYRNDYEETSWEYVAEYEYISHITGSRSSIYL------YLDTELVDELTSRLAGPP 197 Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 L L V +D + + L V+ L++ ++ R + N ++ Sbjct: 198 VPRLPGNPIDHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQK 255 Query: 284 IYSCELGRVGKNYTIRITDRINF 306 ++ + + + +N Sbjct: 256 LFRGTIFEEDGALFLTSLESVNP 278 >gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens DSM 7] gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208] gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus amyloliquefaciens LL3] Length = 377 Score = 42.3 bits (98), Expect = 0.086, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 97/333 (29%), Gaps = 60/333 (18%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ VDI+ S S I F + + Sbjct: 42 EIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGFDGSN 101 Query: 96 FIGCSNNLVITLLENLLGASHET-IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + ++G + P L LS V++ + + + + ++ S Sbjct: 102 LLVVEQSDAAIIADLMIGGDGQGADPSLGEIHLSAVQEAMNQM-MGSAATSMSTVFSKKI 160 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTI--NMNMTIENVASSF--------------- 197 + SP + D+ K ++ + + + + +S Sbjct: 161 DISPPRVELLDVTEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLIAEL 220 Query: 198 ----------VLIIPQETLLKTTLISLSSQNK---------------------------- 219 + P+ET Q Sbjct: 221 MDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQGTAKKAAPVQVAPVEFQA 280 Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAIL 277 + + D +++ + + L +T ++K+++ L G +I + Sbjct: 281 FDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEPVDI 340 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 N + + E+ + +N+ +R+TD ++ + Sbjct: 341 LVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 373 >gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484] Length = 238 Score = 42.3 bits (98), Expect = 0.087, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R Y + + + I + ++ V+ L G V+ + A + NG+ + E+ V Sbjct: 157 RMLYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELDRTAGSPADVLVNGRLVARGEVVVV 216 Query: 293 GKNYTIRITDRINFDQ 308 + Y IR+T+ + + Sbjct: 217 DEVYGIRVTEIVAGND 232 >gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile QCD-66c26] gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP 107932] gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile QCD-76w55] gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile QCD-97b34] gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile QCD-37x79] gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile R20291] gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile QCD-32g58] gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile CD196] gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile R20291] Length = 124 Score = 42.3 bits (98), Expect = 0.087, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L + + I K TL+D++ L G +I + + K + ++ V Sbjct: 43 QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV 102 Query: 293 GKNYTIRITDRINFDQ 308 N+ ++IT ++ + Sbjct: 103 DLNFGVKITSIVSEED 118 >gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium modesticaldum Ice1] Length = 375 Score = 42.3 bits (98), Expect = 0.087, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V + + L K+ T++D++ L G VI + NGK I E+ + +N Sbjct: 297 MDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDEN 356 Query: 296 YTIRITDRINF 306 + +RITD ++ Sbjct: 357 FGVRITDIVSP 367 Score = 37.3 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 49/154 (31%), Gaps = 4/154 (2%) Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNFFIGCSNNLVITLLENLL 112 M VDI+ + + + FV + N + + V +++ ++ Sbjct: 1 MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60 Query: 113 GASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171 G + P +L S + + + + + + + + + SP + + D K Sbjct: 61 GGDGMSPPAELNEIHFSAISEAMNQM-MGSAATSMATMLQKKIDISPPMLNTIDFASEKL 119 Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLI-IPQE 204 + + M + + + IP Sbjct: 120 PRPDVDPVIKVSFRMVIEGLVDSELMQIYPIPFA 153 >gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC 27750] Length = 437 Score = 42.3 bits (98), Expect = 0.088, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 68/201 (33%), Gaps = 23/201 (11%) Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176 + PQ + S + + Q + ++ + ++ + Sbjct: 246 NSQPQPEPQPAS-------QAPVQQPAPQAQPVQQPAPQAQSVQQPDMNMQQAGMMGQAV 298 Query: 177 SNEFVTTINMNMTIENVASSFVLIIP-QETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 + + M + + +P Q + + + +Q + N + PFA Sbjct: 299 PQQGMA---MQQGMPMQGMPYGYGMPMQGMMGQPMPMQGYAQPQDVNVAPAAFQPFATDV 355 Query: 236 ----------YQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 +V ++ + L +TT +KD++ G ++ + NGK Sbjct: 356 NPISQKENIELIKDVPLEVTVELGRTTKSIKDILEFAPGTIVELNKIAGESVDVLVNGKY 415 Query: 284 IYSCELGRVGKNYTIRITDRI 304 + E+ + +++ +RIT+ I Sbjct: 416 VAKGEVVVIEESFGVRITEII 436 >gi|331671784|ref|ZP_08372580.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA280] gi|331070773|gb|EGI42132.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA280] Length = 283 Score = 42.3 bits (98), Expect = 0.091, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPT 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179] gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC 49179] Length = 139 Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + L +V+ + G VI NG+ I E+ K Sbjct: 57 LLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK 116 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 117 NLAIRLNEVLDSN 129 >gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1] Length = 99 Score = 42.3 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 27/86 (31%) Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 S D P ++ V++ + + V+ L G +I E + AN Sbjct: 10 SRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVKVLANNLP 69 Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309 I + + + + + + Sbjct: 70 IANGVVLVDRNRIAVEVKEMLPRSPT 95 >gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii DSM 519] gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium sticklandii] Length = 383 Score = 42.3 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +TT + D++ G ++ + NGK++ E+ + +NY Sbjct: 307 DVLLKVTVELGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEVVVIDENY 366 Query: 297 TIRITDRINFDQKS 310 IRITD I +++ Sbjct: 367 GIRITDIIKAEKRL 380 >gi|238752881|ref|ZP_04614346.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380] gi|238708920|gb|EEQ01173.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380] Length = 292 Score = 42.3 bits (98), Expect = 0.094, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 197 FVLII--PQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKTT 252 F L+I P + L L+++++SE + I F + +L + + ++++ + T Sbjct: 179 FTLLIDLPH---VDRFLSKLNNEHQSEKKKNQTFSIKQFDQLVKKLPIRLTSKLSCSELT 235 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 D++ LK G +IP E + ++S + + ++ + + Sbjct: 236 FSDLMKLKEGDIIPATLPEHFPV--FIGKESLFSAVVSESRGKLFL--SEFNDKTNEINH 291 Query: 313 N 313 + Sbjct: 292 D 292 >gi|85059282|ref|YP_454984.1| type III secretion system protein [Sodalis glossinidius str. 'morsitans'] gi|84779802|dbj|BAE74579.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 350 Score = 42.3 bits (98), Expect = 0.096, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + S ++ + V +D + T+ D+ L +G V+P Sbjct: 245 PPAATADSGGRAAITDDVNRTTLLLNALPQQVRVD--VGELSLTVGDLRRLAVGDVVPVT 302 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 R AIL + + I EL +RIT Sbjct: 303 GRFTPYAILRLHNQTIGQGELVSCDGALLVRIT 335 >gi|294678113|ref|YP_003578728.1| surface presentation of antigens protein family [Rhodobacter capsulatus SB 1003] gi|294476933|gb|ADE86321.1| surface presentation of antigens protein family [Rhodobacter capsulatus SB 1003] Length = 418 Score = 42.3 bits (98), Expect = 0.097, Method: Composition-based stats. Identities = 12/125 (9%), Positives = 42/125 (33%), Gaps = 7/125 (5%) Query: 192 NVASSFVLIIPQE----TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247 + +P +L + ++ + ++ + + +D ++ Sbjct: 185 ERKGKLIWAVPVNGRGHSLRRLPGLADEGPISPDREAAEWAHRLENSVMGASAQLDAVLH 244 Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRINF 306 L V+ L+ G IP + +++ + LG+ +R+ + + Sbjct: 245 RVTLPLAAVMRLRAGMDIPIPSDALENLTVEGVGRRKLSAARLGQHRGLRAVRLIE--HE 302 Query: 307 DQKSL 311 +++ + Sbjct: 303 EEELM 307 >gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] Length = 502 Score = 42.3 bits (98), Expect = 0.099, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 80/250 (32%), Gaps = 26/250 (10%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + + L+ +E + Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N ++ + + +E Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IAEGKTVEVIFPLEVEG 372 Query: 193 VA-SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-------PFARKTYQLN----- 239 + + I + + L+ Q + D+ + P K Sbjct: 373 LLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSEMEAIL 432 Query: 240 ----VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 V ++ K L+ ++ VI L NG I L RV + Sbjct: 433 EDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDDH 492 Query: 296 YTIRITDRIN 305 + I++T+ + Sbjct: 493 FGIQMTELVR 502 >gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus hydrogenoformans Z-2901] Length = 124 Score = 42.3 bits (98), Expect = 0.100, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 R+ + T++ ++ LK G V+ L +G+ E+ + + Y +RIT Sbjct: 52 ARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINEMYGVRITGY 111 Query: 304 INFD 307 + D Sbjct: 112 SDED 115 >gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 80 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++++I I K TL ++ LK G +I F + + + NG++ EL V Sbjct: 9 EDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIV 68 Query: 293 GKNYTIRITDRI 304 Y++R+ D + Sbjct: 69 NDKYSLRLVDLV 80 >gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 45/103 (43%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + S Q S +Q +++ + + I + K +KD++ L G +I Sbjct: 294 PVEVSRASFQPLSGSQDTEVVPKNIDLILDVPLEISVVLGRTKKNIKDILNLGTGSLIEL 353 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NGK++ E+ + +N+ +RIT ++ ++K Sbjct: 354 DKLAEEPVEILVNGKKVAYGEVVVIDENFGVRITGIVSNEEKI 396 Score = 36.2 bits (82), Expect = 6.2, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 58/196 (29%), Gaps = 8/196 (4%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + F+ Sbjct: 46 EIGNISMGSASTALSTIINQQVNITTPVVVVTTLKELKNEFEVPNVALEVKYTEGIIGEN 105 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ- 154 + + ++G + P + L +E + Q+ ++T Sbjct: 106 LLVMKITDAAVIASLMMGGDGKIDPDIKE--LGEIEISAVSEAMNQMIGSAATSMATMLM 163 Query: 155 ---ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP + ++ +E V ++ ++ I + SS + ++P T K Sbjct: 164 REVNISPPVSKVWNDITKPLTEGISEDEAVVKVSFSLKIGELVDSSIMQVLPIATAKKVV 223 Query: 211 LISLSSQNKSENQSED 226 I + + + +S Sbjct: 224 SIMMGQEETAPAESAP 239 >gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36] gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36] Length = 122 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 239 NVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 N+ ID + + T L D++ L G VI L NG+ + + E+ V Y Sbjct: 46 NIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVVNGKY 105 Query: 297 TIRITDRIN 305 +++ D ++ Sbjct: 106 GVKLIDVVD 114 >gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM 771] gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum acetoxidans DSM 771] Length = 572 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 40/325 (12%), Positives = 96/325 (29%), Gaps = 55/325 (16%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + ++ V I+ + ++ SF+ F+ + Sbjct: 246 EVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKVQYTEGIIGFN 305 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + + + ++G + ++ +E A + Q+ ++ Sbjct: 306 LWVVTLRDALIIADLMMGGEG----IPASNEITELEISAASEAMNQMIGTAATSLAAIFN 361 Query: 156 SSPNLEDFYDIDYLKKNT--NRLSNEFVTTINMNMTIENV--ASSFVL------------ 199 N+ + + + I+ M + +V + Sbjct: 362 RIINISPPETHIIRARENLGEIIDTHPLVVISFRMIVGDVMDTEIMQIMSVETAKYEVGL 421 Query: 200 ----------------------IIPQETLLKTTLISLSSQNKS---------ENQSEDLI 228 P L +++ ++ E S+ Sbjct: 422 LLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEERVSQTPA 481 Query: 229 DPFARKT-YQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 D K L+V ++ + L KT +KDV+ L G V+ + + NG + Sbjct: 482 DVNWDKINLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVEVLVNGTLVA 541 Query: 286 SCELGRVGKNYTIRITDRINFDQKS 310 E+ V +N+ +RIT+ I ++ Sbjct: 542 RGEVVVVNENFGVRITNVITPQERI 566 >gi|331645399|ref|ZP_08346503.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli M605] gi|331045561|gb|EGI17687.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli M605] Length = 283 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKSHNGFPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 250 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 QS + A Y + + + I K + DV+ L G VI + A + Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305 NG+ I E+ V + Y IRIT+ ++ Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240 >gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC BAA-430] Length = 119 Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K L +++ + G +I + NG+ I E+ K Sbjct: 33 LLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAGESVEIFINGRIIGKGEVMVYEK 92 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 93 NLAIRVNEILDSN 105 >gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 502 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 32/250 (12%), Positives = 80/250 (32%), Gaps = 26/250 (10%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + + L+ +E + Sbjct: 257 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQ---EDAELTELEVSAVQ 313 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N ++ + + +E Sbjct: 314 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IAEGKTVEVIFPLEVEG 372 Query: 193 VA-SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-------PFARKTYQLN----- 239 + + I + + L+ Q + D+ + P K Sbjct: 373 LLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSEMEAIL 432 Query: 240 ----VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 V ++ K L+ ++ VI L NG I L RV + Sbjct: 433 EDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILVRVDDH 492 Query: 296 YTIRITDRIN 305 + I++T+ + Sbjct: 493 FGIQMTELVR 502 >gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 250 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 QS + A Y + + + I K + DV+ L G VI + A + Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305 NG+ I E+ V + Y IRIT+ ++ Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240 >gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 370 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 84/279 (30%), Gaps = 56/279 (20%) Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV 145 N + V+ + + ++G T ++ LS + + + + I S Sbjct: 90 YTEGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEAMNQM-IGSASTS 148 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQE 204 L+ I + SP D + + +V I M + + S + +IP Sbjct: 149 LSTLIGESINISPPRAFVVDFNKGLPENISFPDGYVVKIAFKMVVGEIIDSEIMQLIPIA 208 Query: 205 TLLKTTLISLSSQ----------------------------------------------- 217 + +S Sbjct: 209 FAKRLVEQVMSKNVENSPKESFQGVQDDDIIKTGTKGINNEFSDEVKSTVKHKAEKVDVK 268 Query: 218 ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHRE 271 + +++ E +++ ++ + L +T +KD++ L G +I Sbjct: 269 PVIFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELDKLA 328 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NGK I E+ + +N+ +RI D + ++ Sbjct: 329 GEPVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 367 >gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC 43063] Length = 250 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 QS + A Y + + + I K + DV+ L G VI + A + Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305 NG+ I E+ V + Y IRIT+ ++ Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240 >gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC 43243] Length = 197 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T T+KD++ G +I + NGK + E+ + +N Sbjct: 126 MDVPLEVTVELGRTSKTIKDILEFAPGTIIELNKIAGESVDVLVNGKNVAKGEVVVIEEN 185 Query: 296 YTIRITDRINF 306 + +RIT+ I Sbjct: 186 FGVRITEIIKE 196 >gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818] gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG 18818] Length = 116 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 E++L I + + + ED++ + + V + + K L +++ + G Sbjct: 4 ESILDKQRIHSAKEIELATYLEDMMKNY-TGLLDMEVIFNAELGNTKIALGEILRFEKGS 62 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 +I NG+ I E+ +N IRI + ++ + Sbjct: 63 IIDLGKPAGESIETFINGRVIGKGEVMVYERNLAIRINEILDSN 106 >gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989] gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989] Length = 255 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 249 KKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 T+ +++++K G VI + + + + +G++++ LG N+ I++T + Sbjct: 200 ASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGVNDNNFAIKVTGK 255 >gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MEX-5] gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MEX-5] Length = 377 Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q +L + + N + D DP A L V ++ I+ + + ++ G Sbjct: 270 QTAVLLKDPFMANEADHPGNDTPDRNDPVA--IGALEVPVNFEIDTVALPIDQLAAMRQG 327 Query: 263 QVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 VI L+A+ + I EL VG + +RI D Sbjct: 328 YVIELSRTTSDMQVRLTAHSQVIGHGELVSVGDHLGVRILQMAQRDD 374 >gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC 51333] Length = 250 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 222 NQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 QS + A Y + + + I K + DV+ L G VI + A + Sbjct: 154 TQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVM 213 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRIN 305 NG+ I E+ V + Y IRIT+ ++ Sbjct: 214 VNGRLIARGEIVVVDEEYGIRITEIVS 240 >gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228] gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20] gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228] gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20] Length = 102 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 2/83 (2%) Query: 226 DLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 D L++ +D L ++ +++ L++G VI L N + Sbjct: 9 DRHGLLQSYEDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRI 68 Query: 284 IYSCELGRVGKNYTIRITDRINF 306 E+ KN IRI + ++ Sbjct: 69 FGKGEVMVYEKNLAIRINEILDS 91 >gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont] Length = 136 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 IMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVVND 115 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I + + Sbjct: 116 KYGVRITDIITPSECMRR 133 >gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium radiotolerans JCM 2831] gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium radiotolerans JCM 2831] Length = 122 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 33/93 (35%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L+++ + + L V++ + + L ++ + G VI + Sbjct: 4 LAAKACPDRTGGETGWRAVAVFETLKVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSD 63 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + AN I ++ G ++ +T+ I Sbjct: 64 MVEILANDHPIARGQIVVTGDRISVEVTELIRK 96 >gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC 824] gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain [Clostridium acetobutylicum ATCC 824] Length = 413 Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K +KD++ L G +I + + NGK++ E+ V + Sbjct: 333 ILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVVDE 392 Query: 295 NYTIRITDRINFDQKS 310 N+ +RIT +N +++ Sbjct: 393 NFGVRITSIVNSEERI 408 >gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100] Length = 98 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++V+ + + ++++++ L++G VI L N + E+ Sbjct: 13 EDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVMVY 72 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 73 EKNLAIRINEILDS 86 >gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Thermomicrobium roseum DSM 5159] Length = 128 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K ++ L+ G V+ L+ N I E+ V + Sbjct: 47 LRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDE 106 Query: 295 NYTIRITDRINFDQKS 310 + +RIT+ ++ +++ Sbjct: 107 KFAVRITEIVSPEKRL 122 >gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018] Length = 395 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K +KD++ L G +I + + NGK++ E+ V + Sbjct: 315 ILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVVDE 374 Query: 295 NYTIRITDRINFDQKS 310 N+ +RIT +N +++ Sbjct: 375 NFGVRITSIVNSEERI 390 >gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2] Length = 101 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V ++ I + ++++++ LK G +I A + NG+ I E+ K Sbjct: 18 LIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRIIGKGEVMVYEK 77 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 78 NLAIRLNEVLDAN 90 >gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22] gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018] gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22] Length = 95 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 29/74 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +D + ++ + + L G +I + + N + I + ++ + + Sbjct: 11 LVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTGDIIVIDE 70 Query: 295 NYTIRITDRINFDQ 308 +R+ D ++ D Sbjct: 71 KLAVRVQDAMDSDN 84 >gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 260.94] gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 102 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDS 91 >gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004] gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus bovienii SS-2004] Length = 135 Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K ++ L G V+P + NG I E+ V Sbjct: 55 IMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVVSD 114 Query: 295 NYTIRITDRINFDQKSLK 312 Y IRITD I ++ + Sbjct: 115 KYGIRITDIITPSERMRR 132 >gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826] gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826] Length = 105 Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++++D L TT+ +++ + G VI L N + E+ KN Sbjct: 23 MDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVYEKN 82 Query: 296 YTIRITDRINF 306 IRI + ++ Sbjct: 83 LAIRINEILDS 93 >gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221] gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei 269.97] gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni] gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221] gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 81-176] gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni 84-25] gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei 269.97] gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 81116] gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8421] gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 1336] gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni S3] gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp. jejuni 305] gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 78 EKNLAIRINEILDS 91 >gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103] gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103] gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355] Length = 137 Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51] gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 421 Score = 41.6 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K T+K+++ L G VI + NGK + CE+ + + Sbjct: 339 ILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLVAKCEVVVINE 398 Query: 295 NYTIRITDRINFDQKSLK 312 + IRITD + ++ K Sbjct: 399 TFGIRITDIVQPSERMTK 416 Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 69/221 (31%), Gaps = 7/221 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95 + + + + V+I+ I + V + Sbjct: 43 EIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQIRKDYPIPSVIVDVRYKAGIEGSN 102 Query: 96 FIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + S +++ ++G + E P +L +S + + + + + + ++ ++ Sbjct: 103 LLILSQRDGAVIVDLMMGGTGENPPTELSELGISGISEAMNQM-MGSAATSMSTMFNSVV 161 Query: 155 ESSPNLEDFYDIDYLKKN---TNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTT 210 + +P D+ + S+E + I+ M +E+V S ++ +IP Sbjct: 162 DITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMVVEDVIDSILVQVIPIHVAKGMV 221 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 L + S ++ E P ++ Sbjct: 222 GKLLGTMGGSGSKPEPKSAPTPTPAPAPAPSLQMEQPQAPV 262 >gi|307136840|ref|ZP_07496196.1| surface presentation of antigens (SPOA) protein [Escherichia coli H736] gi|331640696|ref|ZP_08341843.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli H736] gi|331040070|gb|EGI12278.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli H736] Length = 283 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMISQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 356 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K +KD++ L G +I L NGK I E+ + + Sbjct: 277 LMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 336 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+TD ++ + Sbjct: 337 NFGVRVTDIVSPTDRL 352 >gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC BAA-613] Length = 368 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ I + LKDV+ G V+ + + NG+ I E+ + Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVVVIDD 348 Query: 295 NYTIRITDRINFD 307 N+ +RI++ +N Sbjct: 349 NFGVRISEIVNTR 361 >gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM 5305] Length = 227 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 228 IDPFARKTYQLNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 A +V +D RI L +++VV+LK G V+P + NG+ I Sbjct: 145 AQERAELEMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNGRLIA 204 Query: 286 SCELGRVGKNYTIRITDRINFDQ 308 E+ + N+ +R+ + + + Sbjct: 205 RGEVLVLNDNFCVRVAEILTPKE 227 >gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 95 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +D + T+KD + L G ++ + N + I + ++ + + Sbjct: 11 LVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIVIDE 70 Query: 295 NYTIRITDRINFDQ 308 +R+ D ++ D Sbjct: 71 KLAVRVQDAMDSDN 84 >gi|170021377|ref|YP_001726331.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|188494740|ref|ZP_03002010.1| lateral flagellar export/assembly protein [Escherichia coli 53638] gi|169756305|gb|ACA79004.1| surface presentation of antigens (SPOA) protein [Escherichia coli ATCC 8739] gi|188489939|gb|EDU65042.1| lateral flagellar export/assembly protein [Escherichia coli 53638] Length = 283 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY) (Flagellar motor switch protein fliY) [Coprothermobacter proteolyticus DSM 5265] Length = 287 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VN+ + + ++KD+++L G +I + NGK I E+ + + Sbjct: 208 LLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVIDE 267 Query: 295 NYTIRITDRINFDQKSLKNF 314 ++ +RI D I ++ Sbjct: 268 SFGVRILDIIAPKERLKAEL 287 >gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion translocase SctQ) [Candidatus Protochlamydia amoebophila UWE25] Length = 445 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 34/66 (51%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 Q+ VN+ + + ++ ++ L+ G ++ + + L+ NGK + EL R+G+ Sbjct: 377 QIPVNLTVEVGRIQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEVL 436 Query: 297 TIRITD 302 +R+ + Sbjct: 437 GVRVLE 442 >gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41] gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus C3-41] Length = 407 Score = 41.6 bits (96), Expect = 0.15, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 69/213 (32%), Gaps = 8/213 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95 +G + + VDI+ S + + F +V Q + + Sbjct: 54 EVGNISFGSSATALSALLGQKVDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMN 113 Query: 96 FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG P L LS V++ + + + + ++ + Sbjct: 114 LLVIKQSDAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQM-MGSAATSMSTVFNKKV 172 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP----QETLLKT 209 + SP D +I + N ++ + ++ + I N + S+ + ++P Q + Sbjct: 173 DISPPTIDLMNISQNEGRENIPEDDLLVKVSFRLKIGNLIDSNLMQLLPLKFSQNIVKSL 232 Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 + S + P Q + Sbjct: 233 LGETESIEEPVAATIAPEAPPITAPPVQTQAPV 265 Score = 35.8 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 19/179 (10%), Positives = 53/179 (29%), Gaps = 1/179 (0%) Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191 + + K + + ++ +T +P + + + M Sbjct: 226 QNIVKSLLGETESIEEPVAATIAPEAPPITAP-PVQTQAPVMPPPAQPVYQQPEATMQQP 284 Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251 P + + N + + + + K Sbjct: 285 VYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQVTVELGRTKR 344 Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ++K+++ L G +I + N + I E+ + +N+ +RITD ++ ++ Sbjct: 345 SVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRITDVLSQAERL 403 >gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter youngae ATCC 29220] gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter youngae ATCC 29220] Length = 250 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + + + + T ++ +LK+G V+ C L ANG S L +G Sbjct: 181 DVRITLTFEVGCTSLTFAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTP 240 Query: 297 TIRITDRI 304 +RI + Sbjct: 241 AVRIDKLL 248 >gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB] gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB] Length = 135 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 IMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVND 114 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 115 KYGVRITDIITPSERMRR 132 >gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267] Length = 118 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++ +D L TT +K ++ L++G VI L N + E+ KN Sbjct: 36 MDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVYEKN 95 Query: 296 YTIRITDRINF 306 IRI + ++ Sbjct: 96 LAIRINEILDS 106 >gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277] Length = 118 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++ +D L TT +K ++ L++G VI L N + E+ KN Sbjct: 36 MDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVYEKN 95 Query: 296 YTIRITDRINF 306 IRI + ++ Sbjct: 96 LAIRINEILDS 106 >gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586] Length = 138 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + Q + V + + K T+K+++ L G V+ + Sbjct: 43 FDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMI 102 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V Y +RITD I ++ + Sbjct: 103 NGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 135 >gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195] gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195] Length = 104 Score = 41.6 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 20 EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 80 EKNLAIRINEILDS 93 >gi|239815264|ref|YP_002944174.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] gi|239801841|gb|ACS18908.1| surface presentation of antigens (SPOA) protein [Variovorax paradoxus S110] Length = 322 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKT 251 + L +P + ++ + L+ +P + V + + + Sbjct: 189 GGVWRLGLPHGAVAAVLASESAAAKPPLRSGDHLLPKEPLDQALADRRVALRVMLKGAEL 248 Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTI 298 L + L++ V+P H A ++ A+G + LG+ I Sbjct: 249 NLGQLQELRVDDVVPLEHLLDAPAHVVGADGGRVCDGWLGQSDGRMAI 296 >gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis DSM 12885] Length = 287 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + T+++++ + G V+ L NG+ I E+ + + Sbjct: 208 VLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDE 267 Query: 295 NYTIRITDRINFDQKSLK 312 N+ IRITD ++ ++ + Sbjct: 268 NFGIRITDIVSPGERLRR 285 >gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21] Length = 104 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 20 EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 80 EKNLAIRINEILDS 93 >gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B] gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulovorans 743B] Length = 400 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTL 259 P + ++ + +S ++ D ++V ++ + L KT ++KD+++L Sbjct: 285 PVHNVYESKPVEVSKATFQPLRTADTKSLPNNIDLIMDVPLNISVVLGKTRKSIKDILSL 344 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + + NGK+I E+ V +N+ +RIT ++ + + Sbjct: 345 NNGSLIELDKLAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVSSEDRI 395 >gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio peptidovorans DSM 11002] Length = 384 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + ++ +V++ G VI + NGK I E+ + + Sbjct: 304 IADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE 363 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+T+ +N +K Sbjct: 364 NFGVRVTEILNVGEKI 379 >gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM 3776] Length = 189 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 239 NVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V +D RI L +T L +V+ L+ G V+P + NGK + E+ + N+ Sbjct: 118 DVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVLNDNF 177 Query: 297 TIRITDRINFD 307 +RI + + D Sbjct: 178 CVRIAEILTQD 188 >gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans DSM 771] gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans DSM 771] Length = 331 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 89/274 (32%), Gaps = 25/274 (9%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNF 95 +G + + ++ V I K + SF ++ S + Sbjct: 40 EVGNISMGTAATTLSQILNQRVTIGNPRVIVCKQEEVFKSFATPYLLVYVSFKEGLTGFN 99 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK----RTIAQISAVLNQCIS 151 + + N V T+ +LG P + LS +E A+ + I + + Sbjct: 100 VLIITENEVATIANLMLGGDGNIPPVVE---LSELEISAAQEAMNQMIGSVCTAMTDMFG 156 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--------------MTIENVASSF 197 + +P T + + V + + ++++ Sbjct: 157 IPIDITPPTITMVHDIKNASLTPLPTEQPVVVVRFDTFISNILKTTIMQILSVDAAQEEA 216 Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKD 255 ++ + + +++ S+N + T L++ ++ + L KT T+++ Sbjct: 217 NYLLQKAGYMDKEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKTLSTVEE 276 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + L+IG+ + + C + A + +L Sbjct: 277 LARLEIGKKLTLPLSAE-CVEIYAGDTLVGKGKL 309 >gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255] gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter winogradskyi Nb-255] Length = 97 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 27/79 (34%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 F +++V++ + + V+ L G +I E+ + AN + S + Sbjct: 17 FVATLDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVM 76 Query: 291 RVGKNYTIRITDRINFDQK 309 T+ + + Sbjct: 77 VNRNRITVEVKQMLPRAPD 95 >gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans DSM 10331] Length = 95 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + ++ ++ L G VI + NG + E+ V Sbjct: 14 LRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAKGEVVVVDD 73 Query: 295 NYTIRITDRINFDQ 308 + +RI + I+ D+ Sbjct: 74 EFGVRILEIISSDE 87 >gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni CG8486] gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni M1] Length = 105 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V+ + + ++ +++ L++G VI L N + E+ Sbjct: 21 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 80 Query: 293 GKNYTIRITDRINF 306 KN IRI + ++ Sbjct: 81 EKNLAIRINEILDS 94 >gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus saanensis SP1PR4] Length = 100 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 238 LNVNIDTRIN--LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++ +D + ++ LK+++ L G VI L + + E+ + Sbjct: 19 MDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVDLVIGDRIVARGEVVVLNGY 78 Query: 296 YTIRITD 302 + + +T+ Sbjct: 79 FALNVTE 85 >gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937] gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937] Length = 138 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + Q + V + + K T+K+++ L G V+ + Sbjct: 43 FDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMI 102 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V Y +RITD I ++ + Sbjct: 103 NGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 135 >gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfitobacterium hafniense DCB-2] Length = 417 Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + K T+K+++ L G VI + NGK I CE+ + + Sbjct: 335 ILDVPLQVSVELGKAKKTIKEILELGPGSVIELDRLAGEPVDMIVNGKLIAKCEVVVINE 394 Query: 295 NYTIRITDRINFDQKSLK 312 + IRITD + ++ K Sbjct: 395 TFGIRITDIVQPGERMTK 412 Score = 36.9 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 65/192 (33%), Gaps = 7/192 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95 + + + + V+I+ I + V + Sbjct: 43 EIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQIRKDYPIPSVIVDVRYKAGIEGSN 102 Query: 96 FIGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + S +++ ++G + E P +L S+S + + + + + + ++ ++ Sbjct: 103 LLILSQRDGAVIVDLMMGGTGENPPTELSELSISGISEAMNQM-MGSAATSMSTMFNSVV 161 Query: 155 ESSPNLEDFYDIDYLKKN---TNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTT 210 + +P D+ + S+E + I+ M +E+V S ++ +IP Sbjct: 162 DITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMVVEDVIDSILVQVIPIHVAKGMV 221 Query: 211 LISLSSQNKSEN 222 L + S + Sbjct: 222 GKLLGTMGGSGS 233 >gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a] Length = 414 Score = 41.6 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 31/282 (10%), Positives = 80/282 (28%), Gaps = 28/282 (9%) Query: 43 KKFLPKIFKEKMDLD---VDISYTSCQSGKFSHIIHSF-KENFVFSQASLSSWSSNFFIG 98 +FL +I+ Q+ + + ++ + + + F Sbjct: 129 SEFLGMGIDISTPTPYILSEINIADLQNYEQTDMVAAINFDLTIDGVIKSE-----FISV 183 Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158 +L TL + ++G T P+ + + +T + Sbjct: 184 LDIDLAATLADRMIGG--ATSPEPIVTEPAPAPAPQPVPQAEPVQQAAPVQQATPVPQAT 241 Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTI---NMNMTIENVASSFVLIIPQETLLKTTLISLS 215 + + V + +M + P + + Sbjct: 242 PMPQVAPVQQAAPVPQAAPMPQVAPVPQADMYAQQGYYGYPNPAMNP-AMYGQPVQPVMQ 300 Query: 216 SQNKSENQSEDLID------PFARKTYQ-----LNVNIDTRINLKKTT--LKDVVTLKIG 262 Q ++ L P + + ++V + + + T +KD++ G Sbjct: 301 PQPAVNYRNAQLAQFESFEAPLGSEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFSQG 360 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 +I + + NG I ++ + N+ +RIT+ + Sbjct: 361 TIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEIV 402 >gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4] Length = 388 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 40/340 (11%), Positives = 103/340 (30%), Gaps = 67/340 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ VDI+ + + + F + + + Sbjct: 46 EIGNISFGSSATALSTLLNQKVDITTPTVSIIEKDKLQDEFPQPYVAIQVSYTEGFLGTN 105 Query: 96 FIGCSNNLVITLLENLLGASH-ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG T L LS V++ + + + + ++ S Sbjct: 106 LLVIKQDDASIIADLMLGGDGLNTGTDLGEIQLSAVQEAMNQM-MGSAATSMSTIFSKKV 164 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP----------- 202 + SP + D + + N + + I+ M I + S+ + ++P Sbjct: 165 DISPPIIDLMYLPEGEGVENIPDIDLLVKISFKMKIGTLIDSNMMQLVPLSFAKSLVEDL 224 Query: 203 ---------QETLLKTTLISLSSQNKSENQSEDLIDPFARKT------------------ 235 + ++ S + Q PF Sbjct: 225 TNNNNTNATKSDKIEEEPPKPSMATSTPVQETQSQQPFTTYQQPQAPQHFGGQHLSQPVN 284 Query: 236 -----------------------YQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHR 270 L++ + + L +T ++K+++ L G +I Sbjct: 285 VQPAEFASFGQPALQESEARNLNMLLDIPLSVTVELGRTKRSVKEILELSQGSIIELDKL 344 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N + I E+ + +N+ +R+TD ++ ++ Sbjct: 345 AGEPVDILVNNRLIAKGEVVVIDENFGVRLTDIVSQTERI 384 >gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92] gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92] Length = 105 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++++D L TT+ +++ + G VI L N + E+ KN Sbjct: 23 MDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVYEKN 82 Query: 296 YTIRITDRINF 306 IRI + ++ Sbjct: 83 LAIRINEILDS 93 >gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614] Length = 246 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 8/164 (4%) Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201 ++A L + + + ++ FV + +E L++ Sbjct: 84 LAAALQPSLDAAATALGARSGAARQVDPDTVVDEIAEPFVI-----VPLEGSDVVAALLV 138 Query: 202 PQETLLKTTLISLSSQNKSENQSE-DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 P+ L + + S D + V ++ I + T+++++ L Sbjct: 139 PEALLAHPADDTPALPTTSAAAPTGDRRGIEMLHGVDMEVTVE--IGRARMTVRELLDLA 196 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 G V+ + A L NG+ I E+ + +++ +RIT+ + Sbjct: 197 PGAVLELDRAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIV 240 >gi|256020211|ref|ZP_05434076.1| surface presentation of antigens (SPOA) protein [Shigella sp. D9] gi|260853450|ref|YP_003227341.1| putative lateral flagellar export/assembly protein [Escherichia coli O26:H11 str. 11368] gi|260866396|ref|YP_003232798.1| putative lateral flagellar export/assembly protein [Escherichia coli O111:H- str. 11128] gi|300817289|ref|ZP_07097507.1| surface presentation of antigens protein [Escherichia coli MS 107-1] gi|307315214|ref|ZP_07594793.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|331666529|ref|ZP_08367403.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA271] gi|332281373|ref|ZP_08393786.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|257752099|dbj|BAI23601.1| predicted lateral flagellar export/assembly protein [Escherichia coli O26:H11 str. 11368] gi|257762752|dbj|BAI34247.1| predicted lateral flagellar export/assembly protein [Escherichia coli O111:H- str. 11128] gi|300530265|gb|EFK51327.1| surface presentation of antigens protein [Escherichia coli MS 107-1] gi|306905395|gb|EFN35932.1| surface presentation of antigens (SPOA) protein [Escherichia coli W] gi|315059471|gb|ADT73798.1| Lateral flagellar C-ring switch protein [Escherichia coli W] gi|323158011|gb|EFZ44112.1| lateral flagellar export/assembly protein [Escherichia coli EPECa14] gi|323178512|gb|EFZ64090.1| lateral flagellar export/assembly protein [Escherichia coli 1180] gi|323181529|gb|EFZ66949.1| lateral flagellar export/assembly protein [Escherichia coli 1357] gi|323379971|gb|ADX52239.1| surface presentation of antigens (SPOA) protein [Escherichia coli KO11] gi|331065753|gb|EGI37637.1| putative surface presentation of antigens (SPOA) protein [Escherichia coli TA271] gi|332103725|gb|EGJ07071.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 283 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591] Length = 138 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + Q + V + + K T+K+++ L G V+ + Sbjct: 43 FDVQDTQGSMQDIDLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMI 102 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG I E+ V Y +RITD I ++ + Sbjct: 103 NGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 135 >gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1] Length = 84 Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + ++ + +++V+ L G V+ L N + + E+ V Sbjct: 9 VLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVVVED 68 Query: 295 NYTIRITDRINFDQ 308 N+ I+IT+ + ++ Sbjct: 69 NFGIKITELVGSEK 82 >gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1] Length = 135 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 55 IMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND 114 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 115 KYGVRITDIITPSERMRR 132 >gi|167574618|ref|ZP_02367492.1| hypothetical protein BoklC_32595 [Burkholderia oklahomensis C6786] Length = 324 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 18/172 (10%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E++ A++ + V CI P D + + ++ Sbjct: 161 TERRFARKVATNLVRVTAHCID------PAATRADDAPIPRAAAHSRHPVLFVACDVEDA 214 Query: 190 IENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + Q+ L + Q L + + ++ Sbjct: 215 LRRTVGEIQFALDEGWQQRLFAGLTAGQRRGAPARKQPRLLAGALR-------IRLTAQL 267 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ D++ LK G V+P + A ++YS + + Sbjct: 268 MERRIPFGDLLHLKPGSVLPVRLHANARVL--AGDSQLYSASIVEHNGKLCL 317 >gi|283834474|ref|ZP_06354215.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220] gi|291070021|gb|EFE08130.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220] Length = 287 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 24/210 (11%), Positives = 62/210 (29%), Gaps = 36/210 (17%) Query: 93 SNFFIGCSNNLVITLLENLLG---------ASHETIPQLYNRSLSTVEKKLAKRTIAQ-- 141 + L++ LL N G + + + R S + ++ + Sbjct: 76 GHLAFDIDRALLLMLLGNFYGLTSSLADEKSQDDLPTKTETRLRSRLALDISNIIFNKNI 135 Query: 142 --ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199 I L ST Q F D + + +++ + ++L Sbjct: 136 SGIPLTLKPDSSTVQTHWAYQLTFVLGDEEN-------------CSFRILLDDSHTDYIL 182 Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK--DVV 257 + + + + + + S + K + + + + + L D+ Sbjct: 183 NLIRRS------EHGEKKKQIDKASAEARKKTLIKEIIHTLPLTMNVKIAEIPLNVADLT 236 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSC 287 T+K G ++P + E+++ Sbjct: 237 TIKPGDILPIAMPDTFPV--YIGKSELFNA 264 >gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM 2489] Length = 408 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T T+KD++ L G +I + N K I E+ + +N Sbjct: 330 MDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDEN 389 Query: 296 YTIRITDRINF 306 + +R+T+ + Sbjct: 390 FGVRVTEILPA 400 >gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426] Length = 393 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +T ++++++ L G +I + N K I E+ + +N+ Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENF 375 Query: 297 TIRITDRINFDQKSLK 312 +RITD I+ + + Sbjct: 376 GVRITDIISQSDRLTR 391 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 22/221 (9%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ S + + + F + Sbjct: 42 EIGNISFGSSATALSMLLNQKVEITTPSVSMIERTSVADEFPQPYVAIQVNYTEGLLGTN 101 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + +LG + L ++ + + Q+ + ++ Sbjct: 102 LLVIKQKDAAIIADLMLGGDGTA----ADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFG 157 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + SP D+ K +F+ ++ + I L+ +++ Sbjct: 158 KRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGE-------------LIDSSI 204 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + L + ++ L+ + VN+ + + + + Sbjct: 205 MQLLPVDFAKELVAQLLGSPLEEPGAAEVNLKSSADARPFS 245 >gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium capsulatum ATCC 51196] Length = 248 Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 49/162 (30%), Gaps = 7/162 (4%) Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT---INMNMTIENVASSFVLIIPQETL 206 + + P E I+ + +V + + M + S P+ Sbjct: 82 LQDVLAAMPMAEPPAQIEPTARPQGVPVTPYVLRAGSLAVRMAMICELSEKAAKAPETA- 140 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + +S + + + V+ R ++ +++++ G V+ Sbjct: 141 ---ARPAPASSGQPSAAASPASAANVDLLLDIEVDASLRFGSRELAIRELLETGPGDVLE 197 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L K + E+ V N+ +R+T+ + Sbjct: 198 LDRHITDPVDLVVGDKIVARGEVVLVNGNFGLRVTEVAEPKK 239 >gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3] gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. C56-T3] Length = 393 Score = 41.2 bits (95), Expect = 0.20, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +T ++++++ L G +I + N K I E+ + +N+ Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENF 375 Query: 297 TIRITDRINFDQKSLK 312 +RITD I+ + + Sbjct: 376 GVRITDIISQSDRLTR 391 Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 22/221 (9%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ S + + + F + Sbjct: 42 EIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEGLLGTN 101 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + +LG + L ++ + + Q+ + ++ Sbjct: 102 LLVIKQQDAAIIADLMLGGDGTA----ADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFG 157 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + SP D+ K +F+ ++ + I L+ +++ Sbjct: 158 KRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGE-------------LIDSSI 204 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + L + ++ L+ + VN+ + + + + Sbjct: 205 MQLLPVDFAKELVAQLLGSPLEEPGAAEVNLKSSADARPFS 245 >gi|289806090|ref|ZP_06536719.1| flagellar motor switch protein FliM [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 74 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 19/54 (35%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S ++ ++ D R+ + + L ++ LK G V+P Sbjct: 3 ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPA 56 >gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17] Length = 96 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V + I + +L++++ L VI + + NG I E+ VG Sbjct: 21 LQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVVTVGD 80 Query: 295 NYTIRITDRINFDQK 309 + +R+T+ +N D++ Sbjct: 81 RFGVRMTELVNPDKR 95 >gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K] gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans 2CP-1] Length = 97 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILS 278 E Q+ D R L+V ++ + L + T++D++ L G VI + Sbjct: 2 EAQTPRNGDSTRRLDMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG+ + E V + +RITD ++ ++ + Sbjct: 62 VNGRLVARGEAVVVNDKFGVRITDIVSPQERIQR 95 >gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus Ellin6076] gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus Ellin6076] Length = 282 Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 32/102 (31%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + + + P + + + + +KDV+ L G ++ Sbjct: 177 PEAAPEDAGGEPHTVKRNDMPPTMELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELN 236 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N I E+ V NY +RI +N + Sbjct: 237 RGVNEPVEVLVNHCLIARGEVVVVEGNYGVRIQQIVNRQDRL 278 >gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1] gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131] gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N] Length = 98 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 222 NQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + L D + +L V + + + T++D++ L G V+ + Sbjct: 3 DATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDV 62 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 NG I E+ VG+ + IR I +++ Sbjct: 63 LVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 94 >gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17029] Length = 98 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 222 NQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + L D + +L V + + + T++D++ L G V+ + Sbjct: 3 DATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDV 62 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 NG I E+ VG+ + IR I +++ Sbjct: 63 LVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 94 >gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879] Length = 128 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 27/73 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + L +++ + G +I + N + + E+ + Sbjct: 41 LLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVYER 100 Query: 295 NYTIRITDRINFD 307 N IRI + ++ + Sbjct: 101 NLAIRINEILDSN 113 >gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum kujiense DSM 16994] gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum kujiense DSM 16994] Length = 114 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 30/83 (36%) Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ++L + V + + TL +++ L+ G VI N + I Sbjct: 21 KELSWMDYDGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPAGESVESYVNRRII 80 Query: 285 YSCELGRVGKNYTIRITDRINFD 307 E+ KN IRI + ++ Sbjct: 81 GKGEVMVYEKNLAIRINEVLDSS 103 >gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus ATCC BAA-450] Length = 271 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 49/136 (36%), Gaps = 12/136 (8%) Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 + +++ + + + + L L++ ++ E + +PF + Sbjct: 147 EPAQGTGLYATIDVNLNDHQGTIHVK------LDELLVATLTEQLDLQPKESMYEPFCQS 200 Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 V ++ ++ K L ++++L+ V+P S + ++S + Sbjct: 201 LASTPVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPV--SIGQEHLFSGRVAENDG 258 Query: 295 NYTIRITDRINFDQKS 310 + +N D++S Sbjct: 259 QLVL----ILNQDKES 270 >gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b] Length = 136 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 IMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVND 115 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 116 KYGVRITDIITPSERMRR 133 >gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia coli B185] Length = 299 Score = 40.8 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L + Q + + QL V++D + K+ TL + L G+V+ + Sbjct: 204 LEMGQMQDIQETE--QHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEK 261 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + ANG I EL ++ + + IT+ + Sbjct: 262 RTEIRANGALIGYGELVQLDNSLGVEITEWV 292 >gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146] gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella ictaluri 93-146] Length = 137 Score = 40.8 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND 116 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 117 KFGVRITDIITPSERMRR 134 >gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC3088] Length = 102 Score = 40.8 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Query: 226 DLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 D F + Q + VNI + K +KD++ LK G V+ L N + Sbjct: 14 DRESSFNTEVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVV 73 Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310 E+ V + Y +R+T+ I + + Sbjct: 74 AQGEVVLVNERYGVRLTNVIPSEDRI 99 >gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ZM4] gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 103 Score = 40.8 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ + + + +L +++ L G V+ + + NGK I E+ V Sbjct: 25 SDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANELLDVVVNGKLIAKGEVVTVNGR 84 Query: 296 YTIRITDRINFDQKSLKN 313 + +RI D ++ + S+ + Sbjct: 85 FGVRIVDVVSNENNSVGD 102 >gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium thermolithotrophum DSM 11699] Length = 122 Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 239 NVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ ++ I + L++++ L ++ + NGK + +L + +NY Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRENY 103 Query: 297 TIRITDRINFDQKS 310 I+IT I +++ Sbjct: 104 GIKITQIITPEERM 117 >gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni M1] Length = 123 Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + RI KK LKDV+T+ IG V+ + K I E+ V Sbjct: 44 IMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDG 103 Query: 295 NYTIRITDRINFDQKSLKNF 314 N+ ++IT+ I ++ L+ Sbjct: 104 NFGVQITE-IGSKKERLEQL 122 >gi|167567194|ref|ZP_02360110.1| hypothetical protein BoklE_31835 [Burkholderia oklahomensis EO147] Length = 341 Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 47/172 (27%), Gaps = 18/172 (10%) Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 E++ A++ + V CI P D + + ++ Sbjct: 178 TERRFARKIATNLVRVTTHCID------PAAMRADDAPIPRAAAHSRHPVLFVACDVEDA 231 Query: 190 IENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246 + + Q+ L + Q L + + ++ Sbjct: 232 LRRTVGKIQFALDEGWQQRLFAGLTAGQRRGAPARKQPRPLAGALR-------IRLTAQL 284 Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ D++ LK G V+P + A ++YS + + Sbjct: 285 MERRIPFGDLLHLKPGSVLPVRLHANARVL--AGDSQLYSASIVEHNGKLCL 334 >gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685] Length = 137 Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 + L ++ S Q DL + V + + K T+K+++ L G Sbjct: 32 HSGDIFQNLEEGATLGSSAGQDIDL-------ILDIPVKLTVELGRTKMTIKELLRLSQG 84 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V + +RITD I ++ + Sbjct: 85 SVVSLDGLAGEPLDVLINGYLIAQGEVVVVNDKFGVRITDIITPSERMRR 134 >gi|218703508|ref|YP_002411027.1| lateral flagellar motor switch C-ring FliM-like protein [Escherichia coli UMN026] gi|293403339|ref|ZP_06647430.1| predicted protein [Escherichia coli FVEC1412] gi|298378950|ref|ZP_06988831.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302] gi|300898058|ref|ZP_07116427.1| surface presentation of antigens protein [Escherichia coli MS 198-1] gi|59889764|emb|CAH19119.1| Lateral flagellar export/assembly protein (FliM-like) [Escherichia coli] gi|218430605|emb|CAR11471.1| Lateral flagellar export/assembly protein Flagellar motor switch C-ring (FliM-like) [Escherichia coli UMN026] gi|284920028|emb|CBG33084.1| lateral flagellar export/assembly protein (FliM-like) [Escherichia coli 042] gi|291429192|gb|EFF02212.1| predicted protein [Escherichia coli FVEC1412] gi|298280063|gb|EFI21567.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302] gi|300358236|gb|EFJ74106.1| surface presentation of antigens protein [Escherichia coli MS 198-1] Length = 283 Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 81/245 (33%), Gaps = 27/245 (11%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMVSQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164 LL N G + +N + E +L R I ++ ++ L+ Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 165 DIDYLKKN-TNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKSEN 222 I + T L+++ + + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLADD--EESSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPAL- 205 Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 L + ++ +I + D+ +K G ++P E Sbjct: 206 --------IKEIIRSLPLTLNVKIAELSLNVADLTQIKAGDILPISLGETFPVA--IGQS 255 Query: 283 EIYSC 287 E++S Sbjct: 256 ELFSA 260 >gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C str. Eklund] Length = 388 Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 42/336 (12%), Positives = 105/336 (31%), Gaps = 66/336 (19%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + + V+I+ + + ++F+ S Sbjct: 50 EIGNISMGSASTALSTIIGSAVNITTPQVSTTTLKELRNTFEVPNIALEVKYTSGIVGGN 109 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + ++G + L+ +E+ + Q+ + + Sbjct: 110 LLVMKIPDAAVIANLMMGGDGRIEEKSE---LTEIEESAVSEAMNQMIGSAATSMATMFG 166 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP + + + E + ++ +TI ++ S+ + I+P +T K Sbjct: 167 REVNISPPVSKIWRDTSKPLSETISEEEEIVEVSFKLTIGDLVDSNIMQILPIKTAKKIV 226 Query: 211 LISLSSQNKSE------------NQSEDLIDPFARKTY---------------------- 236 I + + K E Q ++ + + Sbjct: 227 SIMMGEEEKQEVPQSNIHQQGEREQVQNSQEQLNKNVVPKPVETYSQPQVSSPQPQVNIQ 286 Query: 237 ---------------------QLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKT 273 L+V ++ + L KT ++K+V+ L G +I + Sbjct: 287 KATFAPLGESPINGAPQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIELDKLAEE 346 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NGK+I E+ V +N+ +RI + ++ +++ Sbjct: 347 PVEIYVNGKKIAYGEVVVVDENFGVRIMNIVSGEER 382 >gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 353 Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + K +KD++ L G +I L NGK I E+ + + Sbjct: 273 LMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 332 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+TD ++ + Sbjct: 333 NFGVRVTDIVSPIDRI 348 >gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 422 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T +++++ L G +I + NGK I E+ + +N Sbjct: 344 MDVPLEVTVELGQTKKKIQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDEN 403 Query: 296 YTIRITDRINFDQKS 310 + IRIT+ I+ ++ Sbjct: 404 FGIRITEIISPVERI 418 >gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 353 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + K +KD++ L G +I L NGK I E+ + + Sbjct: 273 LMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 332 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+TD ++ + Sbjct: 333 NFGVRVTDIVSPIDRI 348 >gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 354 Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + K +KD++ L G +I L NGK I E+ + + Sbjct: 274 LMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLAGEPVDLLVNGKLIAKGEVVVIDE 333 Query: 295 NYTIRITDRINFDQKS 310 N+ +R+TD ++ + Sbjct: 334 NFGVRVTDIVSPIDRI 349 >gi|301646793|ref|ZP_07246647.1| surface presentation of antigens protein [Escherichia coli MS 146-1] gi|301075028|gb|EFK89834.1| surface presentation of antigens protein [Escherichia coli MS 146-1] Length = 283 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 40 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMISQV----GHLAFDIDRSLLL 88 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 89 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 148 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 149 VITHWAYQLTFTLAGDEE----SCFRILLDDAYTDFILNLIRHSEHSKPQQVAKSVNKPA 204 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 205 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 253 Query: 281 GKEIYSC 287 E++S Sbjct: 254 QSELFSA 260 >gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis ATCC 21756] Length = 83 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + +NV I + ++ ++ + G VIP + + AN I E+ Sbjct: 2 TQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQIS 61 Query: 293 GKNYTIRITDRIN 305 I++T + Sbjct: 62 DDRIAIQVTRAAD 74 >gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Desulfotomaculum nigrificans DSM 574] Length = 390 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 36/367 (9%), Positives = 105/367 (28%), Gaps = 67/367 (18%) Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62 ++ ++ + +L LG+ +G + E ++ V I+ Sbjct: 31 QATLPPDSGEMSTLLTDEEKDALGE----------IGNISMGSASTTLSELLNQKVSITS 80 Query: 63 TSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + SF+ ++ + + + + + ++G T+ + Sbjct: 81 PRVRVMTKTELFDSFEVPYLVIKVDFSEGLNGYNLLIIRLSDAAVMASLMMGGDGTTMSE 140 Query: 122 LYNR------------------------------------------------SLSTVEKK 133 + +E+ Sbjct: 141 EISELEISAAAEAMNMMIGTAATSLSQMFHRPINISPPQTNLLKTKSDPLVHPPEQIEET 200 Query: 134 LAKRTIA-QISAVLNQCISTTQESSPNLED----FYDIDYLKKNTNRLSNEFVTTINMNM 188 + + + +I +++ I E+ DI L ++ Sbjct: 201 IVVVSFSLKIGDLVDTDIMQIMGVETAKEEANLLLMDIMGLAQDETPAPETAPAGAANAN 260 Query: 189 TIENVASSFVLI-IPQETL-LKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNIDTR 245 + + P + + S + Q+ ++ + + + + Sbjct: 261 PVSPPVGNMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDIPLKVSVV 320 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + K +KDV+ + G V+ + NG + + E+ V +N+ +RIT+ I+ Sbjct: 321 LGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNENFGVRITNIIS 380 Query: 306 FDQKSLK 312 ++ + Sbjct: 381 PMERIKR 387 >gi|315616845|gb|EFU97462.1| lateral flagellar export/assembly protein [Escherichia coli 3431] gi|323171043|gb|EFZ56692.1| lateral flagellar export/assembly protein [Escherichia coli LT-68] Length = 249 Score = 40.8 bits (94), Expect = 0.28, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 31/247 (12%) Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105 L F +K ++ + C+ + +N + + + +L++ Sbjct: 6 LGSYFLKKHRSNITLKKIGCE-------MDIINKNAELMISQV----GHLAFDIDRSLLL 54 Query: 106 TLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAV---LNQCISTTQESSPNLE 161 LL N G + +N + E +L R I + L + + Sbjct: 55 MLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSST 114 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-IIPQETLLKTTLISLSSQNKS 220 Y T E + +++ + F+L +I K ++ S + Sbjct: 115 VITHWAYQLTFTLAGDEE----SCFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPA 170 Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 L + ++ +I + D+ +K G ++P E Sbjct: 171 L---------IKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPISLGETFPVA--IG 219 Query: 281 GKEIYSC 287 E++S Sbjct: 220 QSELFSA 226 >gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM 43160] Length = 249 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 58/179 (32%), Gaps = 13/179 (7%) Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196 R ++S + +S + +D L T + + E+ Sbjct: 60 RLSGEVSGDVVLVVSAEVVDALANSPVGPMDVATALRPALEAAAATLGRVRVDAEHTEDP 119 Query: 197 -----------FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 + +P T L+ Q + + V ++ Sbjct: 120 DTAMDGLRDKGMFVAVPLLAGGGTVEAVLALQVTLPQARTQRGSLDLLRHVAMEVTVE-- 177 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 I + T+ ++++L G+V+ A L NG I E+ V +++ +RI++ + Sbjct: 178 IGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVVDEDFGLRISEIV 236 >gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1] gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1] Length = 411 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 14/207 (6%) Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--------NQCISTTQESSPNLE 161 NLL + + + +E + + L + +E+ L+ Sbjct: 198 NLLRSKGD----PLAQPPQDIEDVIVVVSFDMKIGDLVDTEIMQIMSVETAKEEAHLLLK 253 Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLISLSSQNKS 220 D + + E T+ ++ S I+ QET T Sbjct: 254 DIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGIMMQETAPPPTPAMPPQAAPI 313 Query: 221 ENQSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 + S ++ + + + + K +KDV+ + G V+ + Sbjct: 314 KQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSLADEPVDILV 373 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINF 306 NG + + E+ V +N+ IRIT+ I+ Sbjct: 374 NGTLVATGEVVVVNENFGIRITNIISP 400 >gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043] Length = 175 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K ++ L G VI + NG I E+ V Sbjct: 95 IMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVVDD 154 Query: 295 NYTIRITDRINFDQK 309 Y IRIT+ I ++ Sbjct: 155 KYGIRITEIITPSER 169 >gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC 17025] Length = 98 Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 222 NQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 + + L + + +L V + + + T++D++ L G V+ + Sbjct: 3 DTARPLTERLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDV 62 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 NG I E+ VG+ + IR I +++ Sbjct: 63 LVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 94 >gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1] Length = 410 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95 +G + + VDI+ S + + F +V Q + + Sbjct: 54 EVGNISFGSSATALSALLGQKVDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMN 113 Query: 96 FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG P L LS V++ + + + + ++ + Sbjct: 114 LLVIKQSDAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQM-MGSAATSMSTVFNKKV 172 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + SP D +I + N ++ + ++ + I N Sbjct: 173 DISPPTIDLMNISQDEGRENIPEDDLLVKVSFRLRIGN 210 Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ + + L +T ++K+++ L G +I + N + I E+ + +N Sbjct: 332 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDEN 391 Query: 296 YTIRITDRINFDQKS 310 + +RITD ++ ++ Sbjct: 392 FGVRITDVLSQAERL 406 >gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61] gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC61] gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y412MC52] Length = 393 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +T ++++++ L G +I + N K I E+ + +N+ Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENF 375 Query: 297 TIRITDRINFDQKSLK 312 +RITD I+ + K Sbjct: 376 GVRITDIISQSDRLTK 391 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 20/221 (9%), Positives = 65/221 (29%), Gaps = 22/221 (9%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ S + + + F + Sbjct: 42 EIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEGLLGTN 101 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + +LG + L ++ + + Q+ + ++ Sbjct: 102 LLVIKQQDAAIIADLMLGGDGTA----ADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFG 157 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211 + SP D+ K +F+ ++ + I L+ +++ Sbjct: 158 KRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGE-------------LIDSSI 204 Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 + L + ++ L+ + VN+ + + + + Sbjct: 205 MQLLPVDFAKELVAQLLGSPLEEPGAAEVNLKSSADARPFS 245 >gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus Desulforudis audaxviator MP104C] Length = 127 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + V++ + T+++ ++L G VI + NG ++ E+ + Sbjct: 45 EYLDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVI 104 Query: 293 GKNYTIRI 300 + +RI Sbjct: 105 NDLFVLRI 112 >gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905] gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905] Length = 407 Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 54/158 (34%), Gaps = 3/158 (1%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNF 95 +G + + VDI+ S + + F +V Q + + Sbjct: 54 EVGNISFGSSATALSALLGQKVDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMN 113 Query: 96 FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + + + + +LG P L LS V++ + + + + ++ + Sbjct: 114 LLVIKQSDAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQM-MGSAATSMSTVFNKKV 172 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + SP D +I + N ++ + ++ + I N Sbjct: 173 DISPPTIDLMNISQNEGRENIPEDDLLVKVSFRLRIGN 210 Score = 35.8 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ + + L +T ++K+++ L G +I + N + I E+ + +N Sbjct: 329 LDIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDEN 388 Query: 296 YTIRITDRINFDQKS 310 + +RITD ++ ++ Sbjct: 389 FGVRITDVLSQAERL 403 >gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum marinum IMCC1322] Length = 112 Score = 40.4 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275 +S E + R ++V++ + + ++D++ L G VI Sbjct: 15 PGAESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPL 74 Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANG I E+ VG+ + IR ++ + +++ Sbjct: 75 DILANGTMIAKGEVVMVGERFGIRFSEIVAPEKRM 109 >gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum CMR15] Length = 132 Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ + + T+ +++ K QV+ + L GK + +L V +++ Sbjct: 60 RVKAQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDEHF 119 Query: 297 TIRITD 302 +RIT+ Sbjct: 120 GVRITE 125 >gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797] Length = 226 Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 239 NVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 NV +D I L +T L ++V+ +K G V+P + NG+ I E+ + N+ Sbjct: 155 NVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLNDNF 214 Query: 297 TIRITDRINFD 307 +R+ + I+ + Sbjct: 215 CVRVAEIISPE 225 >gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima DSM 10411] Length = 95 Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 239 NVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ + +L + +KD++ K G +I ++ K + E+ + + Sbjct: 17 DIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLGMGEVIVLDNKF 76 Query: 297 TIRITDRINFDQ 308 IRIT+ D Sbjct: 77 AIRITNIFTKDD 88 >gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99] Length = 133 Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 53 IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 113 KYGVRITDIITPSERMRR 130 >gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1] gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1] Length = 102 Score = 40.4 bits (93), Expect = 0.32, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V + + + LKDV+ + G V+P ++ANG+ + E+ + Sbjct: 13 DVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQDGRF 72 Query: 297 TIRITDRIN 305 +RI + + Sbjct: 73 ALRIVELVG 81 >gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886] Length = 116 Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 6/101 (5%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 SS + S D+ R + VN+ + + + D++ + +G VI Sbjct: 20 PSSDAPAPVSSNDM-----RFIRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGE 74 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314 + NG + E+ V Y +R+ + ++ ++ L+ Sbjct: 75 PMDVRVNGTLLGHAEVVVVNNKYGLRLVNVVD-EKDMLRGL 114 >gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035] Length = 102 Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 NV + + + TL+D++ L G V+ + NG I E+ VG+ Sbjct: 25 ANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVVVVGEK 84 Query: 296 YTIRITDRINFDQKS 310 + IR D ++ Q+ Sbjct: 85 FGIRFGDIVDPRQRI 99 >gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT 98-5489] Length = 119 Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + K LK+++ + G +I + NG+ + E+ K Sbjct: 33 LLDMKVLFHAELGSTKIALKEILQFEKGSIIDLQKPAGESVEIYINGRIVGKGEVMVYEK 92 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 93 NLAIRVNEVLDSN 105 >gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1] gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1] Length = 401 Score = 40.4 bits (93), Expect = 0.33, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 3/107 (2%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQ 263 + + + +S E S + L++ ++ + L +T ++KD++ L G Sbjct: 292 VEQPVQVQPASFTNFEQPSMSKPESKNLDML-LDIPLNVTVELGRTNRSVKDILELSSGS 350 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 +I + N + I E+ + +N+ +RITD ++ + Sbjct: 351 IIELDKLAGEPVDVLVNSRLIAKGEVVVIDENFGVRITDIVSQSDRL 397 Score = 36.2 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 69/200 (34%), Gaps = 11/200 (5%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + S I F +S Sbjct: 48 EIGNISFGSSATALSTLLNQKVEITTPKVSIQERSRIEEDFPHPYVAIQVQYTEGFSGAN 107 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + + +LG L ++ + + Q+ + ++ S Sbjct: 108 LLVIKQDDAAIIADLMLGGDGLNPSGD----LGEIQVSAVQEAMNQMMGSAATSMSTVFS 163 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210 + SP D + + ++ +T I+ ++ + N + S+ + ++P K Sbjct: 164 KKVDISPPRVDMLYLPEGEGADAIPHDDLLTKISFSLKVGNLIDSNIMQLLPLG-FAKQL 222 Query: 211 LISLSSQNKSENQSEDLIDP 230 + L++ N + + + D+++ Sbjct: 223 VDELTNNNDASSTNSDIMEQ 242 >gi|296282259|ref|ZP_06860257.1| hypothetical protein CbatJ_01495 [Citromicrobium bathyomarinum JL354] Length = 298 Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 30/274 (10%), Positives = 75/274 (27%), Gaps = 23/274 (8%) Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91 ++ + L + +F + + SC + ++ +L Sbjct: 34 ARLGTRLARALQPRFAALFDTRKLEVELVDTASCAGDALGE---TLGSGMHHARFALPVK 90 Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV-LNQCI 150 + +I + +LG + R+L + +++ ++ A Sbjct: 91 GLGILVSAKIGALIGEFDRMLGGDGDAPE--DARALPASADRFSRQIEGEVLAACAEASG 148 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI----NMNMTIENVASSFVLIIPQETL 206 ++ +I F + +TI ++FV + + Sbjct: 149 RDDLAAAARGTVLREIVPSSAQAPVHLATFAVSRPDTPKFMLTIAVCETTFVQFAGEAPV 208 Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 K +L + P A + + + L + L++G ++P Sbjct: 209 GKPVRRTLGELPLDRS-------PLAH----VEMTATATLVDMTLPLHRIAGLQVGTLLP 257 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 LS I +G + + I Sbjct: 258 VSI--HRSVPLSIADITIALGAVGALDDRVALEI 289 >gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein [Edwardsiella tarda EIB202] gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60] Length = 137 Score = 40.4 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 57 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND 116 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 117 KFGVRITDIITPSERMRR 134 >gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Selenomonas sputigena ATCC 35185] Length = 394 Score = 40.4 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T T+KD++ L G ++ + NGK + E+ + +N Sbjct: 316 LDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDEN 375 Query: 296 YTIRITDRINFDQK 309 + +RITD ++ ++ Sbjct: 376 FGVRITDIVSPAER 389 >gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 381 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKT 273 Q+ E S + + L+V + + L +T +KD++ L G +I Sbjct: 281 FQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGE 340 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 341 PVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 377 >gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. G11MC16] Length = 394 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +T ++++++ L G +I + N K I E+ + +N+ Sbjct: 317 DVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENF 376 Query: 297 TIRITDRINFDQKSLK 312 +RITD ++ + + + Sbjct: 377 GVRITDIVSQNDRLKR 392 >gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827] Length = 138 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 58 IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117 Query: 295 NYTIRITDRINFDQKSLK 312 NY IRITD I ++ + Sbjct: 118 NYGIRITDIITPSERMRR 135 >gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-1] gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter dehalogenans 2CP-1] Length = 324 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 65/266 (24%), Gaps = 65/266 (24%) Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145 L + + LV+ +++ + G P SL+ VE + Sbjct: 66 LDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAA---SLTPVEVTALELLALAALDG 122 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205 + SP L + + +T L++P Sbjct: 123 ACGVAELEERLSPRLAR------ADAEP-----AGALAVELEVTAGPARGRARLLLPPAA 171 Query: 206 L--------LKTTLISLSSQNKSENQSE----DLIDP----------------------- 230 + L L S + D ++P Sbjct: 172 VRALRGPAELDRQLPMPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLR 231 Query: 231 ----------------FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 A + QL V ++ + L +V L+ G V+ + Sbjct: 232 ALGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGL 291 Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300 L + I EL V +RI Sbjct: 292 VTLRLGERAIARGELVDVEGAVGVRI 317 >gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans NG80-2] Length = 393 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +T ++++++ L G +I + N K I E+ + +N+ Sbjct: 316 DVPLQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENF 375 Query: 297 TIRITDRINFDQKSLK 312 +RITD ++ + + + Sbjct: 376 GVRITDIVSQNDRLKR 391 >gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7] Length = 188 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V + Sbjct: 106 IMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDE 165 Query: 295 NYTIRITDRINFDQKSLK 312 Y IR+TD I + + Sbjct: 166 KYGIRVTDIITPSDRISR 183 >gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Halanaerobium praevalens DSM 2228] Length = 417 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 239 NVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V ++ + L K ++D++ L G +I L NGK + E+ + +N+ Sbjct: 341 DVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVVVIDENF 400 Query: 297 TIRITDRINFDQKS 310 R+ D I+ ++ Sbjct: 401 GFRVKDIISPAERL 414 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 45/143 (31%), Gaps = 9/143 (6%) Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNFFIGCSNNLVITLLENLLGASH 116 V+I+ + F +I + + V + + + + + ++G Sbjct: 74 VEITTPEVEVQTFKQLIEEYDKPCVLVKVEYVEGIEGLSLLVIDTKDAAVIADLMMGGDG 133 Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES----SPNLEDFYDIDYL--K 170 L+ + + Q+ + +S + SP +F D+D + + Sbjct: 134 LEGMDQE--MLNEISISAVGEAMNQMMGAASTAMSNILDVLVNISPPTAEFIDLDDVIEE 191 Query: 171 KNTNRLSNEFVTTINMNMTIENV 193 E + + + + +V Sbjct: 192 GRDWFDPAEEIVVTSFKLKVGDV 214 >gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC 35185] Length = 398 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T T+KD++ L G ++ + NGK + E+ + +N Sbjct: 320 LDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDEN 379 Query: 296 YTIRITDRINFDQK 309 + +RITD ++ ++ Sbjct: 380 FGVRITDIVSPAER 393 >gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C] Length = 97 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILS 278 E Q+ D R L+V ++ + L + T++D++ L G VI + Sbjct: 2 EAQTPRNGDSTRRLDLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLDIL 61 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 NG+ + E V + +RITD ++ ++ + Sbjct: 62 VNGRLVARGEAVVVNDKFGVRITDIVSPQERIQR 95 >gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10] gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1] gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10] gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar Microtus str. 91001] gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua] gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92] gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125] gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. IP275] gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. F1991016] gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. E1979001] gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. B42003004] gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516] gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. India 195] gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A] gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004] gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038] gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27] gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 40.4 bits (93), Expect = 0.36, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 118 KYGVRITDIITSSERMRR 135 >gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis C6786] Length = 320 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 ++ ++ P L V ++ + ++ T+ + + G V+P Sbjct: 224 DERAAAEAPQDAPPPTFDIDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAP-GEVT 282 Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301 + ANG+ EL +VG+ + + Sbjct: 283 IRANGRPFGCGELIQVGEQLAVEVK 307 >gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 32953] gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP 31758] gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis YPIII] gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis PB1/+] Length = 138 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 118 KYGVRITDIITPSERMRR 135 >gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus DSM 13965] Length = 132 Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T T+++++ + G V+ L NG+ I E+ + +N Sbjct: 54 LDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVIDEN 113 Query: 296 YTIRITDRINFDQKSLK 312 + IRITD ++ ++ + Sbjct: 114 FGIRITDIVSPGERLRR 130 >gi|312602786|ref|YP_004022631.1| type III secretion apparatus protein SctQ [Burkholderia rhizoxinica HKI 454] gi|306431589|emb|CBK52141.1| type III secretion apparatus protein SctQ [Burkholderia rhizoxinica HKI 454] gi|312170100|emb|CBW77112.1| type III secretion apparatus protein SctQ [Burkholderia rhizoxinica HKI 454] Length = 400 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242 I ++ E + + L + ++ + + A QL + I Sbjct: 277 LIRLHAQAEIGGQTLSI------LKDPYMTEHVDKSLANDTLTAEARDEAACIDQLELPI 330 Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREK-TCAILSANGKEIYSCELGRVGKNYTIRIT 301 I+ L ++ L+ G V+ + L +G+ I EL VG + IRI Sbjct: 331 QLEIDTIALPLHEICALRAGYVLELPNPVDAVQIKLVTHGRTIGYAELVSVGDHLGIRIL 390 Query: 302 DRIN 305 + Sbjct: 391 QMVQ 394 >gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetivibrio cellulolyticus CD2] Length = 410 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V + + L +T +KD++ G +I + NGK I E+ + ++ Sbjct: 336 MDVPLQVTVELGRTNRLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAKGEVVVIDES 395 Query: 296 YTIRITDRINFDQKS 310 + +RITD I+ ++ Sbjct: 396 FGVRITDIIHPSKRL 410 >gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter nitrofigilis DSM 7299] Length = 293 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 27/212 (12%) Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN-QCISTTQESSPNLEDFYDIDYL 169 +LG + + + + ++ ++ IS +N Q + I+ Sbjct: 75 MLGGTGDLKEHIDD-EITDAINEIVSNICGSISTSVNAQGFPDISGLKHEILGSKIIECN 133 Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVL-----IIPQETLLKTTLISLSSQNKSENQ- 223 K N N F + + ++N S ++ I+P + + +S N+S +Q Sbjct: 134 GKENND--NTF----SFKLNLDNKISEVIISFDDVILPFLSEITGKEADAASNNESSSQG 187 Query: 224 ----------SEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 L D ++ + + + R+ K LKD++ IG++I Sbjct: 188 FPSLPTSNGIDSLLSDESSKNLKLLFDIKLKLSVRLGTKLFLLKDILKWDIGEIIELEQM 247 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + NG +I E V + ++I + Sbjct: 248 VNEPLDILVNGIKIGEGEAVIVEGKFGLKIKN 279 >gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168] Length = 375 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + R+ + T+K ++ L G ++ L NGK I E+ + + Sbjct: 297 IQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLAGEPVDLLVNGKLIAKGEVVVIDE 356 Query: 295 NYTIRITDRINF 306 N+ R+ D I+ Sbjct: 357 NFGFRVKDIISP 368 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 58/160 (36%), Gaps = 5/160 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + +D V+I+ + F + ++ V + +S Sbjct: 39 EIGNIAMGSAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGLEGIN 98 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + + + ++G + +L LS + + + + + +++ + ++ Sbjct: 99 LLIIKEEDAMVIADLMMGGDGTSDEKLDEIHLSAIGEAMNQMMGSSSTSM-SSILNEVVN 157 Query: 156 SSPNLEDFYDIDYLKKNTNR---LSNEFVTTINMNMTIEN 192 SP + DID L + +E V +I+ + + + Sbjct: 158 ISPPETKYLDIDELNGKREKYLGSDDEKVVSISFRLKVGD 197 >gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602] Length = 138 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 118 KYGVRITDIITPSERMRR 135 >gi|167841182|ref|ZP_02467866.1| translocation protein in type III secretion [Burkholderia thailandensis MSMB43] Length = 327 Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 4/97 (4%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTY----QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 I ++ + + + DP A +V I + L + L+ G ++ Sbjct: 231 IGVTMETFDDWLDVEPADPAATLPLVLPLDASVRIVAQAAAIDVPLDRLAALRSGDILEG 290 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L G+ L + IRI + Sbjct: 291 PAIGDGLCTLKIGGRPFARGMLLDIDGRLAIRIEHFV 327 >gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family [Succinatimonas hippei YIT 12066] gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family [Succinatimonas hippei YIT 12066] Length = 315 Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + LSS K+++ + + + I+ + K L + L G V+ + Sbjct: 222 QITLLSSLQKTDSGDDMADSEELTTIEDVELTINFSLESIKLPLSSIKELTEGSVLDLNN 281 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + GK I + VG ++IT Sbjct: 282 SALENIAVKLEGKTIGYGRIIEVGGKNALQIT 313 >gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31] gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp. K31] Length = 83 Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + +NV I + ++ ++ + G VIP + + AN I E+ Sbjct: 3 QVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQISD 62 Query: 294 KNYTIRITDRIN 305 I++T + Sbjct: 63 DRIAIQVTRAAD 74 >gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9] gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Thermoanaerobacter italicus Ab9] Length = 375 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKT 273 Q+ E S + + L+V + + L +T +KD++ L G +I Sbjct: 275 FQSFDEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGE 334 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + ANGK I E+ + +N+ +RI D ++ ++ Sbjct: 335 PVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371 >gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 140 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 7/95 (7%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++T L S S KS+ S ++ ++ I + + LK G V+P Sbjct: 44 IETLLASGSPMLKSDGTSSVELEQIPQQVL-------FEIGRASLEIGQLRQLKTGDVLP 96 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 + N + I EL G + +RIT Sbjct: 97 VGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRIT 131 >gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum 5521] gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4 str. BoNT E BL5262] Length = 412 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P ++V +D + L +T +++D++ L G +I + + NGK+I Sbjct: 326 PIKNIDLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALG 385 Query: 288 ELGRVGKNYTIRITDRIN 305 E+ V +N+ +RIT+ ++ Sbjct: 386 EVVVVDENFGVRITNIVS 403 >gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003] Length = 124 Score = 40.0 bits (92), Expect = 0.41, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 44 ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 103 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 104 KYGVRITDIITSSERMRR 121 >gi|238786391|ref|ZP_04630319.1| Type III secretion system apparatus protein [Yersinia bercovieri ATCC 43970] gi|238712699|gb|EEQ04783.1| Type III secretion system apparatus protein [Yersinia bercovieri ATCC 43970] Length = 305 Score = 40.0 bits (92), Expect = 0.41, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + I L ++ L +GQ + + NG+ + S L R G++ +RI Sbjct: 241 TLVMEIGRIAVPLGEIKQLAVGQTLNCQTSVYGEVNIRLNGQPVGSGSLLRCGEDLVVRI 300 Query: 301 TD 302 Sbjct: 301 DQ 302 >gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068] Length = 212 Score = 40.0 bits (92), Expect = 0.41, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 239 NVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V++D RI L + L+DV+ L+ G V+ + NG+ I E+ + N+ Sbjct: 139 DVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVLNDNF 198 Query: 297 TIRITDRINFDQ 308 +R+ + ++ D Sbjct: 199 CVRVAELLSGDD 210 >gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM 4541] Length = 138 Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 58 IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117 Query: 295 NYTIRITDRINFDQKSLK 312 NY IRITD I ++ + Sbjct: 118 NYGIRITDIITPSERMRR 135 >gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein [Tepidanaerobacter sp. Re1] gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Tepidanaerobacter sp. Re1] Length = 376 Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 196 SFVLIIPQETLLK--TTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLKKT- 251 VL +PQ+ LK + E+ + L+V ++ + L +T Sbjct: 253 EAVLTMPQKEPLKSAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRTE 312 Query: 252 -TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 T+K+++ + G +I A + NGK + E+ + +N+ +RIT+ IN Sbjct: 313 KTIKEILEISSGTIIELDKMAGEPADILVNGKLVAKGEVVVIDENFGVRITEIINS 368 >gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131] Length = 138 Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 58 IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117 Query: 295 NYTIRITDRINFDQKSLK 312 NY IRITD I ++ + Sbjct: 118 NYGIRITDIITPSERMRR 135 >gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F] Length = 138 Score = 40.0 bits (92), Expect = 0.42, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 ILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 118 KYGVRITDIITSSERMRR 135 >gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 101 Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 239 NVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V ++ + L ++ ++ LK G V+ L + A L +GK + L V N+ Sbjct: 34 HVVVELVVQLGHASMSVDELFALKAGDVVKLLEQVHEPASLCLDGKPVARGNLVAVDDNF 93 Query: 297 TIRITD 302 I++T+ Sbjct: 94 GIQLTE 99 >gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli] gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. 493-89] gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str. H 2687] Length = 137 Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|149191149|ref|ZP_01869407.1| flagellar basal-body rod protein B [Vibrio shilonii AK1] gi|148834987|gb|EDL51966.1| flagellar basal-body rod protein B [Vibrio shilonii AK1] Length = 255 Score = 40.0 bits (92), Expect = 0.43, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 2/75 (2%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 + V + + + TL ++ L+ G +P + NG + Sbjct: 183 REEILNNLRYQPVELGCVMLHGQCTLHELSKLQPGDFMP--MTLCKNLTVKVNGHPTFFG 240 Query: 288 ELGRVGKNYTIRITD 302 +L + + I Sbjct: 241 KLQSINSELGVEIDG 255 >gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1] Length = 136 Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 56 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 115 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 116 KYGVRITDIITPSERMRR 133 >gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21] gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21] Length = 96 Score = 40.0 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V + + K L+DV+ L VI + NGK I E+ G Sbjct: 11 IQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQGN 70 Query: 295 NYTIRITDRINFD 307 + IR+ + + Sbjct: 71 RFAIRVLEIVGAS 83 >gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC 25644] Length = 409 Score = 40.0 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +N+ + K +++++++ G VI + NGK I E+ + Sbjct: 330 LMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVIND 389 Query: 295 NYTIRITDRINFDQKS 310 N+ +RIT+ ++ Q+ Sbjct: 390 NFGVRITNILSQSQRI 405 >gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8] Length = 154 Score = 40.0 bits (92), Expect = 0.46, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 39/92 (42%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 SE + ++ + + + + + TLK V+ + G +I + Sbjct: 58 PSETRKTEVPSDKLELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDIL 117 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK I E+ + +N+ +RIT+ ++ ++ Sbjct: 118 VNGKLIARGEVVVIDENFGVRITEIVSPKERL 149 >gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G] gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180] gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357] Length = 134 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMRR 131 >gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila WSU 86-1044] Length = 165 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 K +++ ++ L+ G I R ++ L NG + EL +VG+N IRI + Sbjct: 111 KMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGENLGIRILE 163 >gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium papyrosolvens DSM 2782] Length = 400 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 1/109 (0%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 PQ ++ + Q + S + L + + + + +KD++ Sbjct: 293 PQRQRSPVSVQPVQFQAFDDGLSATEKKNISL-IMDLPLQVTVELGRTQKLIKDILEFGS 351 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G VI + NGK I E+ + +++ +RITD I+ ++ Sbjct: 352 GSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400 >gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 134 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMRR 131 >gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739] Length = 137 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046] gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046] Length = 137 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A] gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5] Length = 137 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|149908776|ref|ZP_01897436.1| hypothetical protein PE36_21284 [Moritella sp. PE36] gi|149808050|gb|EDM67991.1| hypothetical protein PE36_21284 [Moritella sp. PE36] Length = 306 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 17/183 (9%) Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148 ++ + +N ++ TL E LGA+ + + S E +L KR + L+ Sbjct: 109 NNVGLKVLLSINNAMLYTLTEIFLGATKPSNKDNLAQP-SDSEYRLLKRILTIQLDALDN 167 Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208 L ++ N + +EF+ + ++ TI+ SS+ + P K Sbjct: 168 ----------QLSHHHEWTISHTNQPTIGDEFI-SSTIDCTIKEYLSSWRIWYP-----K 211 Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + S N+++ E L A + NI+ + + L + LK G I Sbjct: 212 EFINQTLSSNRTKPDYELLAAKLANAATNIPTNINVILAKTQLNLVQLTQLKSGDFIMMD 271 Query: 269 HRE 271 E Sbjct: 272 LPE 274 >gi|119947193|ref|YP_944873.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37] gi|119865797|gb|ABM05274.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37] Length = 266 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 IP + +L + ++ + D + + V + + L D+ +L Sbjct: 162 IPFKVILNQNIEQTLVKSYLPHPLIDKA-SIEKSLLSVEVEGYVTMMSRTLKLGDISSLN 220 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 IG VI + S ++ ++ + + D+ DQ Sbjct: 221 IGDVISMEMHDHAF--FSIGDTTVFRGKISTQNERLLFTVNDQQENDQ 266 >gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1] gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1] Length = 98 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 2/93 (2%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAIL 277 S+ + A ++V ++ + L K L + L G VI + Sbjct: 2 SDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQI 61 Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 ANG E+ G +RIT+ + + Sbjct: 62 LANGSIFAKGEVVSTGDKLGVRITEIVPASARI 94 >gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073] gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073] gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972] gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1] gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1] gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972] gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1] Length = 137 Score = 40.0 bits (92), Expect = 0.47, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252] Length = 293 Score = 40.0 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 39/295 (13%), Positives = 90/295 (30%), Gaps = 41/295 (13%) Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89 +E +L + L + ++ I+ + ++ + V AS Sbjct: 9 RLEATREALQQFLQTLLNQELTLELGTPATIT---------TDQLNELAGDRVLIWASSE 59 Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149 F IG + + + L + +LG + + ++A + + L Sbjct: 60 P----FAIGLTPDWIPLLSQAMLG----EALNPGDEGTDDLLGEVAAQGYGTLRNALAAE 111 Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209 E S ++ + L + + + I + +++P + Sbjct: 112 GVRLPEVSFVVQQPGS--GAAQPPVELPDSLLQL-PFTLQIGDTRHEGFILLPPSVTQQP 168 Query: 210 T------------------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL--K 249 T + S + D + +V ++ + L + Sbjct: 169 TSRAPKATAAGAAEQAAVEVRPASFGELGPERIGDGGVKGNLELL-ADVELEIVVELGRR 227 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 + L DV+ L G +I + ANG+ I E + + + +RIT + Sbjct: 228 RLPLADVLRLTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLV 282 >gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702] Length = 419 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + ++V + + + T +KD++ G +I + + NG I Sbjct: 329 SEQKENLQLLMDVPLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIA 388 Query: 286 SCELGRVGKNYTIRITDRI 304 ++ + N+ +RIT+ + Sbjct: 389 RGDVVVIDDNFAVRITEIV 407 >gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70] Length = 134 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMRR 131 >gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str. E2348/69] gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39] gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026] gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412] gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354] gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536] gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11] gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN [Escherichia coli O127:H6 str. E2348/69] gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia coli IAI39] gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia coli UMN026] gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82] gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412] gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354] gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli FVEC1302] gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1] gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1] gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101] gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75] gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str. NRG 857C] gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3] gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327] gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2] gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1] Length = 137 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus nasoniae] Length = 234 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 3/108 (2%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 PQ ++ L + ++ ++ + QL + ++ + + +L + + + Sbjct: 129 PQGNIM---LEQPVTSDQDDHNASPESSTAIFDLNQLALKVNFILQRQTFSLNTIKSWQT 185 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 G + L NG+ EL +VG+ + + ++ +Q+ Sbjct: 186 GTQLRLNSDAHCAIALEINGQIFAKGELIQVGEQLAVELHTLLSTEQE 233 >gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863] gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509] gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v] Length = 137 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1] gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88] gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89] gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1] gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia coli S88] gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA] gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034] gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1] gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146] gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3] gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252] gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263] Length = 137 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium carboxidivorans P7] gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans P7] Length = 406 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + ++I + K +KD++ L G +I + + NGK + E+ V + Sbjct: 327 ILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVVVVDE 386 Query: 295 NYTIRITDRINFDQKS 310 N+ +RIT I+ +++ Sbjct: 387 NFGVRITSIISSEERI 402 Score = 39.2 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 61/202 (30%), Gaps = 9/202 (4%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + F+ +S Sbjct: 58 EIGNISMGSASTALSTIINQQVNITTPIVTITRLKDLKDQFEVPNVALEVKYVSGIVGEN 117 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + ++G LS +E + Q+ + + Sbjct: 118 LLVMKITDAAVIANLMMGGDGNVEGDPKE--LSEIELSAVSEAMNQMIGSAATSMATMFM 175 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTT 210 SP + ++ +E + ++ ++ I ++ S+ + I+P T K Sbjct: 176 REVNISPPVSTIWNDLKSPVAKGISEDEPIIKVSFSLAIGDLVDSTIMQILPIATAKK-I 234 Query: 211 LISLSSQNKSENQSEDLIDPFA 232 + + Q E ++ +P A Sbjct: 235 VSIMMGQESPEGEAPAQPEPQA 256 >gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis EO147] gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein [Burkholderia oklahomensis C6786] Length = 115 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P +L L +S + ++ DP ++ V + + TL +++ ++ Sbjct: 7 PDLDVLLDDLAPEASDSPADAIERPRRDPMQL-LAKIPVQLTLEVGSATITLAELMAIEE 65 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 G V+ ++ NG + E+ G NY +++ D Sbjct: 66 GSVLELDRLAGEPLLIKINGTPVGHAEVVVSGDNYGLKLLD 106 >gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032] gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032] Length = 154 Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 74 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 133 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 134 KYGVRITDIITPSERMRR 151 >gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10] gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium cellulolyticum H10] Length = 402 Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 1/125 (0%) Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245 M ++ N V PQ + Q + S + L + + Sbjct: 279 MQQSMPNFGYDGVYQEPQRQRAPVNVQPAQFQAFDDGLSVTEKKNISL-IMDLPLQVTVE 337 Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 + + +KD++ G VI + NGK I E+ + +++ +RITD I+ Sbjct: 338 LGRTQKLIKDILEFGSGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIH 397 Query: 306 FDQKS 310 ++ Sbjct: 398 PSKRL 402 >gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda] Length = 134 Score = 40.0 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 54 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVVND 113 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 114 KFGVRITDIITPSERMRR 131 >gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70] gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71] Length = 134 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMRR 131 >gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185] gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185] Length = 137 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 134 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMRR 131 >gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi] gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 137 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. W3110] gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli] gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia coli str. K12 substr. W3110] gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. MG1655] gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia coli str. K-12 substr. DH10B] gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia coli BW2952] gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1] gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1] Length = 137 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 EDL933] gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4024] gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1] gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a] gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989] gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14359] gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B] gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. FRIK2000] gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN [Escherichia coli O157:H7 str. FRIK966] gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088] gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W] gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction [Escherichia coli O157:H7 str. EDL933] gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Sakai] gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS] gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94] gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4196] gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4113] gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638] gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4076] gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4401] gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4486] gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4501] gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869] gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508] gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A] gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22] gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019] gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171] gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1] gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4206] gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4045] gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4042] gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC4115] gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli] gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli] gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11] gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. TW14588] gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia coli 55989] gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia coli IAI1] gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia coli ED1a] gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia coli O157:H7 str. TW14359] gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN [Escherichia coli O26:H11 str. 11368] gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN [Escherichia coli O103:H2 str. 12009] gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN [Escherichia coli O111:H- str. 11128] gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042] gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str. CB9615] gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088] gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1] gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1] gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1] gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1] gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1] gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1] gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1] gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7] gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1] gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1] gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1] gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1] gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W] gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7] gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407] gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia coli W] gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1] gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC 74-1112] gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC1212] gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B] gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. G5101] gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str. USDA 5905] gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. LSU-61] gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14] gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010] gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68] gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11] gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520] gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482] gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120] gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489] gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007] gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3] gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167] gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1044] gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str. 1125] gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736] gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143] gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271] gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280] gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591] gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299] gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82] gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9] gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88] Length = 137 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905] Length = 137 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198] gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198] Length = 313 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + K ++ + L G I I+ NG + S EL ++ Sbjct: 238 QSINSIPVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKI 297 Query: 293 GKNYTIRITDRINFDQ 308 G N+ + I + + Sbjct: 298 GDNFAVEIQRSFSAQE 313 >gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1] Length = 288 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + RI KK LKDV+ + IG VI + + I E+ V Sbjct: 208 IMDVKLPVRVRIGKKKMLLKDVLNMDIGSVIELNQLANDPLDILVDNHVIAQGEVVIVDG 267 Query: 295 NYTIRITDRINFDQKSLKNF 314 N+ ++IT I ++ L Sbjct: 268 NFGVQIT-SIGSKRERLTQL 286 >gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC BAA-895] gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895] Length = 137 Score = 40.0 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|288550130|ref|ZP_05969371.2| flagellar motor switch protein [Enterobacter cancerogenus ATCC 35316] gi|288316311|gb|EFC55249.1| flagellar motor switch protein [Enterobacter cancerogenus ATCC 35316] Length = 293 Score = 39.6 bits (91), Expect = 0.54, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 4/106 (3%) Query: 195 SSFVLII--PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 SF L+ L L S + + Q+ R Y L + + + T Sbjct: 177 GSFTLLFDNAHVDHLLAKLRSPDADQATSRQAPPTPTQIERIFYGLPLKLHGHVTSLNLT 236 Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 + + +K G +IP E ++I+ ++ + Sbjct: 237 VAQLARIKPGDIIPVNINENIPV--YIGKEQIFDAKIAEDRGKLLL 280 >gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 39.6 bits (91), Expect = 0.54, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 58 IMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 117 Query: 295 NYTIRITDRINFDQKSLK 312 NY IRITD I ++ + Sbjct: 118 NYGIRITDIITPSERMRR 135 >gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617] Length = 133 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 53 IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 113 KYGVRITDIITPTERMRR 130 >gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM 20603] Length = 259 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%) Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 D R Y + + + I K ++ V+ L G ++ A L NG + E Sbjct: 177 DDKLRLLYDVEMTLTVEIGRAKLPVRQVLDLTPGSIVELDRVAGAPADLLVNGHLVARGE 236 Query: 289 LGRVGKNYTIRITDRINFDQ 308 + V ++Y +R+T+ I+ + Sbjct: 237 VVVVDEDYGLRVTEIIDTTE 256 >gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2] Length = 133 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V +D + + L++V+ L V+ L NGK I EL V N Sbjct: 54 LDVPLDVIVEIGSTQMPLEEVLKLNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNN 113 Query: 296 YTIRITDRINFDQKS 310 + ++IT + +++ Sbjct: 114 FGLKITHVVTPEERL 128 >gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206] gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15] gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86] gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605] gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206] Length = 137 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627] Length = 137 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301] gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 2457T] gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401] gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017] gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str. 2457T] gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71] gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671] gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218] gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272] gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304] gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227] Length = 137 Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 137 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 137 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718] gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718] Length = 137 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1] Length = 137 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 137 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3] Length = 127 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V+I + K L +++ LK G V+ E + NG + E+ Y +R Sbjct: 58 VDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNGQYGVR 117 Query: 300 ITDRINFDQK 309 + I K Sbjct: 118 LLSIIKKPSK 127 >gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella denitrificans OS217] Length = 122 Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + L D+ + G VI + NG + E+ VG Sbjct: 45 QQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALLGKGEVVEVGGR 104 Query: 296 YTIRITD 302 Y +R+ + Sbjct: 105 YGVRLLE 111 >gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74] Length = 134 Score = 39.6 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMRR 131 >gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC 35316] Length = 137 Score = 39.6 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC BAA-894] gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894] Length = 154 Score = 39.6 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 74 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 133 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 134 KYGVRITDIITPSERMRR 151 >gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC 29220] Length = 137 Score = 39.6 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827] Length = 250 Score = 39.6 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + + + + T++++++L G VI + A L NG+ I E+ + +N+ Sbjct: 174 VEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVIDENFG 233 Query: 298 IRITDRINFDQK 309 IR+T+ I Sbjct: 234 IRVTEIIKPGDT 245 >gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. enterocolitica 8081] gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica W22703] Length = 138 Score = 39.6 bits (91), Expect = 0.57, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 118 KYGVRITDIITPSERMRR 135 >gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168] Length = 137 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2] gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2] Length = 137 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062] gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062] Length = 350 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Query: 211 LISLSSQNKSENQSEDLIDPFAR-KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + L+ Q +E +E + Q++V + ++ ++ ++ ++ + G ++ Sbjct: 248 MSELAEQVNAEQTAEAGAEEIGSIDLSQMSVPVRFEVDEREISIAELESWAAGTLVNIDV 307 Query: 270 R---EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 E+T + A GK I L ++ + +RI+ Sbjct: 308 PALNEETPVYVRAAGKRIAKGHLVQIDERVALRISKT 344 >gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661] gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661] Length = 133 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 2/110 (1%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK--KTTLKDVVTLKIG 262 + + S +S D+ +++ + + L K T+K+++ L G Sbjct: 21 AMNEQASTPSSEGVFKSLESNDITGSLQDIDLIMDIPVKLTVELGRTKMTIKELLRLTQG 80 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V Y +RITD I ++ + Sbjct: 81 SVVSLEGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPTERMRR 130 >gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 137 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012] Length = 137 Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis TXDOH] gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis Bt4] gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis E264] Length = 115 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + + + DP ++ V + + +L +++ + G V+ Sbjct: 17 PTDAPADTATTADAPRRDPRHL-LAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLA 75 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 ++ NG + E+ G+NY ++I D N Sbjct: 76 GEPLLVKVNGTTVGHAEVVVSGENYGLKIIDLEN 109 >gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946] gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430] gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC BAA-2158] Length = 133 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 53 IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 113 KYGVRITDIITPTERMRR 130 >gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163] Length = 138 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 118 KYGVRITDIITPTERMRR 135 >gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio acidaminovorans DSM 6589] Length = 375 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 47/114 (41%), Gaps = 2/114 (1%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTL 259 P+ + T + + + +++ + ++ + + L +T T+ +++ + Sbjct: 260 PRSASISTAPVDVRPAEFAPLGGQEVAISASAIDLISDIPVRITVELGRTRKTIGEILNM 319 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313 G V+ + NGK I E+ + +N+ +R+T+ ++ ++ Sbjct: 320 SPGSVVELNRMAGEPVDVLVNGKLIARGEVVVIDENFGVRVTEIVSRAERIRSM 373 >gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96] Length = 133 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 53 IMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 112 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 113 KYGVRITDIITPTERMRR 130 >gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638] gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638] Length = 137 Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium azorense Az-Fu1] Length = 83 Score = 39.6 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V ++ R+ L + ++ +K G +IP + I+ E+ + + Y Sbjct: 12 DVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIGEMTNINEKY 71 Query: 297 TIRITDRINFD 307 IRI D I D Sbjct: 72 GIRIVDLIKED 82 >gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia MC0-3] Length = 113 Score = 39.6 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 1/89 (1%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L KS ++ DP R ++ V + + L D+++ + G + Sbjct: 17 LGDDPKSITETASPRDPM-RMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGE 75 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITD 302 ++ NG + E+ G++Y +RI + Sbjct: 76 PLVIKVNGTPVGLGEVVVSGEHYGLRIIE 104 >gi|311087551|gb|ADP67630.1| flagellar motor switch protein FliM [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 183 Score = 39.6 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 15 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 69 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 70 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 129 Query: 145 VLNQCISTT 153 ++ Sbjct: 130 AFSEIYKKY 138 >gi|311085822|gb|ADP65904.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 178 Score = 39.6 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%) Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85 + K +EKI+ + KF K ++ + I SC S K II + + + Sbjct: 10 EIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNK--EIITNLR---CLNL 64 Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQISA 144 + + FI N + +++ L G + R +++ E + K+ + I+ Sbjct: 65 IEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKFITN 124 Query: 145 VLNQCISTT 153 ++ Sbjct: 125 AFSEIYKKY 133 >gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium hathewayi DSM 13479] Length = 318 Score = 39.6 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%) Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 D I +K + +++ RI ++KD++ L+ GQ++ + + A + NGK I Sbjct: 236 DHIGEERKKLRDITLDVSVRIGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIG 295 Query: 286 SCELGRVGKNYTIRITDRINFDQ 308 ++ + RI + I Sbjct: 296 KSDVLVTDDKFAARIIEIIGKRD 318 >gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC 35469] gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia fergusonii ATCC 35469] gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253] gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227] Length = 137 Score = 39.6 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 342 Score = 39.6 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 +P A QL V + + TL+ + +L G I + ANG+ I Sbjct: 265 TEPLAL-VDQLEVELTFLVGTHAATLEQLRSLAPGACIELPTPASQAVTICANGRAIGKG 323 Query: 288 ELGRVGKNYTIRITD 302 EL +G +RIT+ Sbjct: 324 ELLDIGNRIGVRITE 338 >gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 137 Score = 39.6 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica Y11] gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 124 Score = 39.6 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 44 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 103 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 104 KYGVRITDIITPSERMRR 121 >gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 124 Score = 39.6 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 44 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVAD 103 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 104 KYGVRITDIITPSERMRR 121 >gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI] gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI] Length = 422 Score = 39.6 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 37/105 (35%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + + + + + + + + +KD++ L G V+ Sbjct: 313 IRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVILGRTRWPIKDILGLTPGSVV 372 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + + NG + E+ V +N+ +RIT I +++ Sbjct: 373 ELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGPEERL 417 >gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae] Length = 325 Score = 39.6 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 35/90 (38%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 +++++L + ++ + I + + L+ + L G +I + AN Sbjct: 214 SETDNLANQSLTNLEEIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVPVNGDVRIIANQ 273 Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSL 311 + + + +L + I++ + + L Sbjct: 274 QPLGTGQLVEIQGRLGIKVVELFAKKTEPL 303 >gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. K] gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ [Anaeromyxobacter sp. K] Length = 324 Score = 39.6 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 71/256 (27%), Gaps = 45/256 (17%) Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV--------------- 130 L + + LV+ +++ + G P SL+ V Sbjct: 66 LDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAA---SLTPVEATALELLALAALDG 122 Query: 131 -------EKKLAKRT-------IAQISAVLNQCISTTQESSPNLED---------FYDID 167 E++L+ R ++ L + + L ++D Sbjct: 123 ACGVAELEERLSPRLARADAEPAGALAVELEVTAGPARGRARLLLPPAAVRALRGPAELD 182 Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQS 224 + + V+ P ++ L+ + + E Sbjct: 183 RQLPVPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLRALGRIDGEGFH 242 Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + + A + QL V ++ + L +V L+ G V+ + L + + Sbjct: 243 VEETE-MAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAV 301 Query: 285 YSCELGRVGKNYTIRI 300 EL V +RI Sbjct: 302 ARGELVDVEGAVGVRI 317 >gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83] Length = 137 Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMHR 134 >gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799] Length = 118 Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + +L +++ L G ++ L NG + E+ V Y +R Sbjct: 45 VQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVVEVNGRYGVR 104 Query: 300 ITD 302 + + Sbjct: 105 LLE 107 >gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14] gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter hamburgensis X14] Length = 87 Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 10/79 (12%), Positives = 26/79 (32%) Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290 F +++V++ + + V+ L G +I E+ + AN + S + Sbjct: 7 FVATLDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVV 66 Query: 291 RVGKNYTIRITDRINFDQK 309 + + + Sbjct: 67 VNRNRIAVEVKQMLPRTPD 85 >gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74] Length = 134 Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 54 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 113 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 114 KYGVRITDIITPSERMHR 131 >gi|33352148|emb|CAD91923.1| putative Na P-type ATPase [Physcomitrella patens] Length = 1058 Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 ++ + VL+I T++ + K+ + + P A+ + Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 I RI+ DV+T ++G +IP R L Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175 >gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum SCRI1043] gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum SCRI1043] Length = 137 Score = 39.6 bits (91), Expect = 0.67, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 5/106 (4%) Query: 212 ISLSSQNKSENQSEDLIDPFA-----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++ + +S D DP + V + + K T+K+++ L G V+ Sbjct: 29 EKPAATTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVA 88 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V Y +RITD I ++ + Sbjct: 89 LDGLAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIITPSERMRR 134 >gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC 35580] Length = 382 Score = 39.2 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 65/186 (34%), Gaps = 7/186 (3%) Query: 134 LAKRTIAQISAVLNQCISTTQESS----PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189 +AK+T QI+ L++ S Q + P + ++ Sbjct: 196 IAKKTAEQIADKLSKTESAPQAAPVQPIPAQSAPDQGGGMGAMNMPMNGMNGMPQMGQQP 255 Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINL 248 + + Q ++ + + + + ++V ++ + L Sbjct: 256 MGMGMQMQGGVQAQGGMVMPGMNPNVQSVQFSPLLNGVTEAEQGNIGLIMDVFMEMTVEL 315 Query: 249 KKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T +K+++++ G +I + N K I E+ + +N+ +R+T+ ++ Sbjct: 316 GRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDENFGVRVTEILSP 375 Query: 307 DQKSLK 312 ++ Sbjct: 376 AERISD 381 >gi|33352140|emb|CAD91919.1| putative Na P-type ATPase [Physcomitrella patens] Length = 1058 Score = 39.2 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 ++ + VL+I T++ + K+ + + P A+ + Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 I RI+ DV+T ++G +IP R L Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175 >gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5] Length = 80 Score = 39.2 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 ++V++ + K + V+ L G +I E+ + AN + S + Sbjct: 7 VSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRNRIA 66 Query: 298 IRITDRINF 306 + + + Sbjct: 67 VEVKRMLPK 75 >gi|167626140|ref|YP_001676434.1| hypothetical protein Shal_4235 [Shewanella halifaxensis HAW-EB4] gi|167356162|gb|ABZ78775.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4] Length = 293 Score = 39.2 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 18/176 (10%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 S + Q R+ S E +L KR + + L P E D L+ Sbjct: 112 GSCSSALQSPMRAPSQSEYRLVKRLMMAVIRTL-----------PVTEIDEDKLELELVM 160 Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233 N + + + L L L ++ Q +L A Sbjct: 161 NTTPIKAPVCCELAFPAAHAGP--ALCFYMAEHL---LELMAEQPSQYQADPELSLKLAH 215 Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 + Q+ + + + + + +L +G ++P + ++ + ++ + Sbjct: 216 RLKQIPLRTLLELGHQSMPVTSLQSLAVGDILPMNL--HSRCPVTVGKRPLFYATV 269 >gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703] Length = 136 Score = 39.2 bits (90), Expect = 0.71, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 56 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 115 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 116 KYGVRITDIITPSERMRR 133 >gi|168055850|ref|XP_001779936.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens] gi|162668650|gb|EDQ55253.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens] Length = 1058 Score = 39.2 bits (90), Expect = 0.71, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 ++ + VL+I T++ + K+ + + P A+ + Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 I RI+ DV+T ++G +IP R L Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175 >gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein [Paenibacillus polymyxa SC2] gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus polymyxa SC2] Length = 437 Score = 39.2 bits (90), Expect = 0.71, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++ + + L +T +KD++ L G +I + N K I E+ + +N Sbjct: 359 MDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVNNKLIAKGEVVVIDEN 418 Query: 296 YTIRITDRINF 306 + +R+TD ++ Sbjct: 419 FGVRVTDIVSQ 429 >gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227] gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227] Length = 137 Score = 39.2 bits (90), Expect = 0.71, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMHR 134 >gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius] gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str. 'morsitans'] Length = 338 Score = 39.2 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 34/99 (34%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 K ++ + D A L + ++ + + +L ++ + G+ Sbjct: 231 AVHPKVRDGLAAAAPTPTGRLALGDDTAADPLANLPLTLEFILQRRYLSLGEIQQFRQGK 290 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 V+ + + ANG + EL ++ + + + Sbjct: 291 VLELDPEGEKHIEIRANGHLLALGELVQLEDRLGVELME 329 >gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica] Length = 144 Score = 39.2 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 Q T+ S + E Q + V + + K T+K ++ L G Sbjct: 32 QAAQQPTSDSSAAIFESLEPQDALAHLSDIDLILDIPVKLSVELGRTKMTIKQLLRLSQG 91 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+ + NG I E+ V Y IRITD I ++ + Sbjct: 92 SVVSLDGLAGEPLDILINGYLIAQGEVVVVSDKYGIRITDIITPSERMRR 141 >gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1] Length = 137 Score = 39.2 bits (90), Expect = 0.73, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLK 260 L + + + S D P + ++V ++ + L + +KD++ L Sbjct: 25 MSDLARELRDEMDHAENPFDVSTDGDLPKNLELL-MDVPLEVSVRLGSVSYQIKDLLRLN 83 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G ++ + N + + E+ + IRITD ++ ++ Sbjct: 84 KGSLVELEKEADDPLEIYVNDRLLAYGEVVMIKDKLGIRITDIVSLKERL 133 >gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01] Length = 123 Score = 39.2 bits (90), Expect = 0.74, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ VN+ + + TLK+++ + G VI + NG E+ + NY Sbjct: 47 KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106 Query: 297 TIRITD 302 +RI + Sbjct: 107 GLRIVE 112 >gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula baltica SH 1] gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula baltica WH47] Length = 141 Score = 39.2 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 239 NVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 V +D RI L + L++V+ L+ G V+ + NG+ I E+ + N+ Sbjct: 70 EVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVMNDNF 129 Query: 297 TIRITDRINFD 307 +R+T+ + Sbjct: 130 CVRVTELVGAS 140 >gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus 11B] Length = 123 Score = 39.2 bits (90), Expect = 0.76, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 34/75 (45%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + + + T++++++L G V+ + L NG I E+ + + Sbjct: 45 LQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVIDE 104 Query: 295 NYTIRITDRINFDQK 309 + +RI++ + D + Sbjct: 105 EFGVRISEIVGPDSE 119 >gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175] gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183] gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175] Length = 118 Score = 39.2 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + +L ++ + G VI + NG + E+ V Sbjct: 40 QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 99 Query: 296 YTIRITD 302 Y +R+ + Sbjct: 100 YGVRLLE 106 >gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum deleyianum DSM 6946] Length = 103 Score = 39.2 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTTL--KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++++D L TTL + ++ L+ G VI L N K E+ KN Sbjct: 21 LDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVYEKN 80 Query: 296 YTIRITDRINF 306 IRI + ++ Sbjct: 81 LAIRINEILDS 91 >gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 137 Score = 39.2 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 57 ILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica OS155] Length = 118 Score = 39.2 bits (90), Expect = 0.78, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + +L ++ + G VI + NG + E+ V Sbjct: 40 QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 99 Query: 296 YTIRITD 302 Y +R+ + Sbjct: 100 YGVRLLE 106 >gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 351 Score = 39.2 bits (90), Expect = 0.80, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T+ + ++N S ++ D D +L + + ++ Sbjct: 236 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344 >gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus asymbiotica] Length = 309 Score = 39.2 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 L +++ + + L + +L+ G ++ + N K + S L + Sbjct: 238 LEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVRILVNQKCLGSGRLVDIQGRLG 297 Query: 298 IRITDRINFDQKS 310 +R+ +R+ +++S Sbjct: 298 VRV-ERLAMEKES 309 >gi|33352150|emb|CAD91924.1| putative Na P-type ATPase [Physcomitrella patens] Length = 977 Score = 39.2 bits (90), Expect = 0.81, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 ++ + VL+I T++ + K+ + + P A+ + Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 I RI+ DV+T ++G +IP R L Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175 >gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 351 Score = 39.2 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T+ + ++N S ++ D D +L + + ++ Sbjct: 236 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344 >gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421] Length = 377 Score = 39.2 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 48/129 (37%), Gaps = 10/129 (7%) Query: 194 ASSFVLIIPQET-------LLKTTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTR 245 + + IPQ+ ++ + + + + ++V ++ Sbjct: 248 GMNMQMGIPQQMNGMQQGGMIMPGINPNVQSVQFQPLQNVPVGTEQGNIGLIMDVYMEVT 307 Query: 246 INLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303 + L + +KD++ + G +I + N K I E+ + +N+ +R+T+ Sbjct: 308 VELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDENFGVRVTEI 367 Query: 304 INFDQKSLK 312 ++ ++ Sbjct: 368 LSPVERIAD 376 >gi|33352142|emb|CAD91920.1| putative Na P-type ATPase [Physcomitrella patens] Length = 977 Score = 39.2 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 ++ + VL+I T++ + K+ + + P A+ + Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 I RI+ DV+T ++G +IP R L Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175 >gi|33352138|emb|CAD91918.1| putative Na P-type ATPase [Physcomitrella patens] gi|33352146|emb|CAD91922.1| putative Na P-type ATPase [Physcomitrella patens] Length = 938 Score = 39.2 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 5/101 (4%) Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238 ++ + VL+I T++ + K+ + + P A+ + Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIV--GFMQEYRAEKTMDALRKMASPSAKVIRE- 136 Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 I RI+ DV+T ++G +IP R L Sbjct: 137 --GIQQRISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEV 175 >gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 99 Score = 39.2 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ ++ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1] gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5] gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1] Length = 117 Score = 39.2 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + L++V+ + G VI NG+ I E+ K Sbjct: 35 LLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVYEK 94 Query: 295 NYTIRITDRINFD 307 N IR+ + ++ + Sbjct: 95 NLAIRLNEVLDSN 107 >gi|255028593|ref|ZP_05300544.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28] Length = 99 Score = 39.2 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 39/98 (39%) Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254 S+ + +P ++ + + + ++ + ++ +Q+ R+ KTT K Sbjct: 1 STMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWK 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ L++G V+ + K + C +G+ Sbjct: 61 ELNKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKK 98 >gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1] Length = 84 Score = 39.2 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 + +N+ + + ++++++ L G +I L NGK I E+ + + Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60 Query: 296 YTIRITDRINF 306 + +R+TD ++ Sbjct: 61 FGVRVTDIVDS 71 >gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1] gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1] Length = 127 Score = 39.2 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V+I + K L +++ LK G V+ E + NG + E+ Y +R Sbjct: 58 VDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNGQYGVR 117 Query: 300 ITDRINFDQK 309 + I K Sbjct: 118 LLSIIKKPSK 127 >gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901] Length = 147 Score = 39.2 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + + + +P + V+I + T+++++ L G VI Sbjct: 44 MELSEFDEPAAAPASQGNNPDLDVILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRL 103 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V + + IR+TD I+ ++ Sbjct: 104 AGEPLDVLVNGTLIAHGEVVVVNEKFGIRMTDVISPSERI 143 >gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB 8052] gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB 8052] Length = 398 Score = 39.2 bits (90), Expect = 0.84, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P L+V +D + L +T +++D++ L G +I + + NGK+I Sbjct: 312 PIKNIDLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALG 371 Query: 288 ELGRVGKNYTIRITDRINFDQKSLK 312 E+ V +N+ IRIT+ ++ ++ + Sbjct: 372 EVVVVDENFGIRITNIVSSVERIKR 396 >gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] Length = 344 Score = 39.2 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T+ + ++N S ++ D D +L + + ++ Sbjct: 229 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 287 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 288 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 337 >gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067] gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171] Length = 99 Score = 39.2 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ ++ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1] Length = 128 Score = 39.2 bits (90), Expect = 0.86, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + +L ++ + G VI + NG + E+ V Sbjct: 50 QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 109 Query: 296 YTIRITD 302 Y +R+ + Sbjct: 110 YGVRLLE 116 >gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC 49176] Length = 370 Score = 39.2 bits (90), Expect = 0.87, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVT 258 +P + + +Q ++ + + + + ++V ++ + L +T T+K+++ Sbjct: 264 MPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTVELGRTNKTIKEILD 323 Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 G +I L NGK + E+ + N+ IRIT+ + Sbjct: 324 FSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369 >gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002] Length = 119 Score = 39.2 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ V + + +L D+V + G V+ + NG I E+ G Sbjct: 41 LRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAEVVVAGD 100 Query: 295 NYTIRITDRINFDQKSL 311 NY +R+ + + D +L Sbjct: 101 NYGLRVVELNDLDLDTL 117 >gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 123 Score = 39.2 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ VN+ + + TLK+++ + G VI + NG E+ + NY Sbjct: 47 KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106 Query: 297 TIRITD 302 +RI + Sbjct: 107 GLRIVE 112 >gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus nematophila ATCC 19061] gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing [Xenorhabdus nematophila ATCC 19061] Length = 135 Score = 39.2 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 55 IMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 114 Query: 295 NYTIRITDRINFDQKSLK 312 Y IRITD I ++ + Sbjct: 115 KYGIRITDIITPSERMRR 132 >gi|254499105|ref|ZP_05111795.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12] gi|254351644|gb|EET10489.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12] Length = 234 Score = 39.2 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%) Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 ++D + V + + K ++ + +++G V+ H T L + + Sbjct: 157 MLDSLDEALAEHTVKLCLELLPSKLSVNHLAGIQVGDVLSTTHPLSTPLRLICGNELLAQ 216 Query: 287 CELGRVGKNYTI 298 ELG + +I Sbjct: 217 AELGYSAHHKSI 228 >gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596] Length = 99 Score = 39.2 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ ++ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVENIGVNLIVRLGKREMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4] gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4] Length = 123 Score = 38.9 bits (89), Expect = 0.91, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFAR------KTYQLNVNIDTRINLKKTTLK 254 +P+ K + + S+ + +L + + + + L Sbjct: 1 MPETESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60 Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 ++ + G VI NG+ I E+ +N IR+ + ++ + Sbjct: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113 >gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 301 Score = 38.9 bits (89), Expect = 0.91, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T+ + ++N S ++ D D +L + + ++ Sbjct: 186 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 244 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 245 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 294 >gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1] gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1] Length = 441 Score = 38.9 bits (89), Expect = 0.91, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L+ +S + D L V++ + L ++VTL+ G VI Sbjct: 340 LEPPRTDSASAAAPDTPPADAPRSLDG----LAVDLRFELPPTSMPLGELVTLQPGAVIE 395 Query: 267 FLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 H I L ANG I + +L VG+ +R+ Sbjct: 396 LPHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 430 >gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70] gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. WCH70] Length = 401 Score = 38.9 bits (89), Expect = 0.91, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T +++++++L G +I + N K I E+ + +N Sbjct: 323 LDVPLQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 382 Query: 296 YTIRITDRINFDQKSLK 312 + +R+TD I+ + + Sbjct: 383 FGVRVTDIISQSDRLKR 399 >gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 301 Score = 38.9 bits (89), Expect = 0.91, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T+ + ++N S ++ D D +L + + ++ Sbjct: 186 ARHQGETLEWLGPLRTVSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 244 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 245 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 294 >gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC 35236] gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC 35236] Length = 269 Score = 38.9 bits (89), Expect = 0.92, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 + + + S E D P A L + + +L + L++G ++P Sbjct: 156 ISELVQDVESLLMEERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLP 215 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 + L NG+ + + EL G ++ +RI Sbjct: 216 VAAQFGGEVKLRLNGRVLGAGELVGCGDSFLVRI 249 >gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568] Length = 137 Score = 38.9 bits (89), Expect = 0.94, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 57 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 117 KFGVRITDIITPSERMRR 134 >gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32] Length = 124 Score = 38.9 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 QL V + + + +L ++ + G VI + NG + E+ V Sbjct: 46 QQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGR 105 Query: 296 YTIRITD 302 Y +R+ + Sbjct: 106 YGVRLLE 112 >gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC 2396] Length = 318 Score = 38.9 bits (89), Expect = 0.95, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 28/91 (30%) Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278 S+ Q L + ++ + TL ++ + G + + Sbjct: 223 TSDTQHTPEPLDAPSDLGNLELKLEFHLGSLNLTLAELSQMTEGAAFDLGLSLEAPVAMK 282 Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 NG+ + CEL + R+ D + Sbjct: 283 VNGQTLARCELVEIDGRLGARVVRLTGGDSE 313 >gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC 51599] Length = 135 Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + ++ + + + V + I +TT+ +V+ L Sbjct: 21 PASSAVDPSVTGALPGVMARLGQGTEGGADIERILDIPVQLSVEIGRTRTTINNVLQLAP 80 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + + NG I E+ V + IR+TD + ++ + Sbjct: 81 GSVVELDAQAGAPMDVLINGYLIAQGEVVVVNDRFGIRLTDIVTPAERMRR 131 >gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003] gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038] gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003] Length = 305 Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S E +P QL V + + + + +L+ G +I Sbjct: 209 NKLEFIGMSHESDELNPEPL-TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 267 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L ANG+ + L + +RI Sbjct: 268 DGEVRLLANGRLLGHGRLVEIQGRLGVRIE 297 >gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus sp. Y4.1MC1] Length = 395 Score = 38.9 bits (89), Expect = 0.96, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++++++ L G +I + N K I E+ + +N Sbjct: 317 LDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 376 Query: 296 YTIRITDRINFDQKS 310 + +R+TD I+ + Sbjct: 377 FGVRVTDIISQSDRL 391 >gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92] gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM] gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM] gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua] gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125] gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola] gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. IP275] gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. E1979001] gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. B42003004] gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9] gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis] gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10] gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92] gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar Microtus str. 91001] gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia pseudotuberculosis IP 32953] gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua] gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F] gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125] gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola] gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. IP275] gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. F1991016] gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. E1979001] gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. B42003004] gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia pseudotuberculosis PB1/+] gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A] gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004] gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia pestis KIM D27] gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9] Length = 307 Score = 38.9 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S E +P QL V + + + + +L+ G +I Sbjct: 211 NKLEFIGMSHESDELNPEPL-TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 269 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L ANG+ + L + +RI Sbjct: 270 DGEVRLLANGRLLGHGRLVEIQGRLGVRIE 299 >gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2] Length = 80 Score = 38.9 bits (89), Expect = 1.00, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 25/73 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 ++V++ + + + V+ L G +I E+ + AN + S + Sbjct: 3 TIDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNR 62 Query: 294 KNYTIRITDRINF 306 + + + Sbjct: 63 NRIAVEVKRMLPK 75 >gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Acetohalobium arabaticum DSM 5501] Length = 408 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%) Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 + + + + R+ K +KD++ L G VI L NGK I Sbjct: 320 TEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIELDKLAGESVDLLVNGKLI 379 Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310 E+ + +N+ R+TD ++ ++ Sbjct: 380 AKGEVVVIDENFGFRVTDIVSPMERI 405 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 58/174 (33%), Gaps = 12/174 (6%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 +G + +D V+I+ + F +I ++ V + + Sbjct: 53 EIGNISMGSAATALYSLLDETVEITAPEVELVTFQKLIQEYERPCVVVDVEYIEGLEGSN 112 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155 + + + ++G + L+ + + Q+ + +ST + Sbjct: 113 LLIIEQQDAAIISDLMMGGDGNNP----DAELNELHLSAVSEAMNQMMGSASTSMSTIMQ 168 Query: 156 SSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENV-ASSFVLIIP 202 + + L NT+ + ++ V ++ ++TI V S + ++P Sbjct: 169 GDKVNISPPNAELLTLNTDEIKSRSFQPDDEVVKVSFDLTIGEVIDSEILQLMP 222 >gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 158 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 12/135 (8%) Query: 179 EFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSENQSEDLID--PFAR 233 E + ++ + F + +P +L T ++ ++ L P + Sbjct: 15 EIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLK 74 Query: 234 KTYQLNVNIDTR-------INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 +V ++ I + + LK G V+P + N + I Sbjct: 75 SDGTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGGCFAPEVTIRVNDRIIGQ 134 Query: 287 CELGRVGKNYTIRIT 301 EL G + +RIT Sbjct: 135 GELIACGNEFMVRIT 149 >gi|255030382|ref|ZP_05302333.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28] Length = 199 Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 4/142 (2%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQASL-SSWSS 93 ++ + K + +++ + + T F+ I + + +F L + Sbjct: 56 TIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELG 115 Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153 I +I + E L G + + R LS E+ K + + L + Sbjct: 116 QIIIELDLAYIIYIHECLSGGNPKRKLS-ERRLLSVFEELTLKSILEKFCEALKDSFKSV 174 Query: 154 QESSPNLEDFYDIDYLKKNTNR 175 SP + + L + T+ Sbjct: 175 HPISPEIVNIETNPALLRVTSP 196 >gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis] Length = 307 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 L S E +P QL V + + + + +L+ G +I Sbjct: 211 NKLEFIGMSHESDELNPEPL-TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPV 269 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 L ANG+ + L + +RI Sbjct: 270 DGEVRLLANGRLLGHGRLVEIQGRLGVRIE 299 >gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens subsp. laumondii TTO1] Length = 139 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 59 ILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118 Query: 295 NYTIRITDRINFDQKSLK 312 Y IRITD I ++ + Sbjct: 119 KYGIRITDIITPSERMRR 136 >gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae] Length = 139 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K ++ L G V+ + NG I E+ V Sbjct: 59 IMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118 Query: 295 NYTIRITDRINFDQKSLK 312 Y IRITD I ++ + Sbjct: 119 KYGIRITDIITPSERMRR 136 >gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Geobacillus thermoglucosidasius C56-YS93] Length = 395 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++++++ L G +I + N K I E+ + +N Sbjct: 317 LDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 376 Query: 296 YTIRITDRINFDQKS 310 + +R+TD I+ + Sbjct: 377 FGVRVTDIISQSDRL 391 >gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM 3645] Length = 212 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ + L+DV+ + G V+ + NG+ I E+ + Sbjct: 137 VRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVLND 196 Query: 295 NYTIRITDRI 304 N+ +RI + I Sbjct: 197 NFCVRIAELI 206 >gi|253990918|ref|YP_003042274.1| hypothetical protein PAU_03444 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782368|emb|CAQ85532.1| Hypothetical protein PAU_03444 [Photorhabdus asymbiotica] Length = 71 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + V +D + TL +++ L+ GQV ++ ++ IL + + I + L +V + + Sbjct: 1 MRVKLDVVVANCSMTLDELIHLQKGQVKSLMNFVQSEVILKSGNQVIATGILVKVDEQFC 60 Query: 298 IRITDRINF 306 + I D++N Sbjct: 61 VAI-DQVNQ 68 >gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis EO147] Length = 326 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + ++ T+ + + G V+P + ANG+ EL +VG+ + Sbjct: 253 VTLEFVLQDERVTVAQLASCHPGLVLPVRGAP-GEVTIRANGRPFGCGELIQVGEQLAVE 311 Query: 300 IT 301 + Sbjct: 312 VK 313 >gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073] gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC 39073] Length = 395 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 35/76 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + ++I+ + ++D+++L G ++ + ++ NG I E+ V + Sbjct: 315 ILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIVNE 374 Query: 295 NYTIRITDRINFDQKS 310 N+ +RIT + ++ Sbjct: 375 NFGVRITHILEPYERI 390 >gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC BAA-613] Length = 320 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 42/85 (49%) Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 +++ I +K + +++ R+ ++KD+++LK GQ++ + + A + NG+ Sbjct: 236 AKEQIGEEKKKLLDITLDVSVRLGSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGEL 295 Query: 284 IYSCELGRVGKNYTIRITDRINFDQ 308 I ++ G + RI + + + Sbjct: 296 IGRGDVLVTGDRFGARIIEVVGKRE 320 >gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399] Length = 395 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++KD++ L G ++ + NGK + E+ + +N Sbjct: 317 LDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 376 Query: 296 YTIRITDRINF 306 + +RIT+ ++ Sbjct: 377 FGVRITEIVSP 387 >gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58] gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58] Length = 111 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ + + + T+L+ +V+ L G ++ + + NG I E+ V Sbjct: 30 ADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADDLLDIMVNGALIAKGEVVTVNGR 89 Query: 296 YTIRITDRINFDQKS 310 Y IRI D + + Sbjct: 90 YGIRIVDIAATENRL 104 >gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum JL354] Length = 118 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++V + + K L++++ L ++ + NG+ I E+ G Sbjct: 11 IQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEVVAQGN 70 Query: 295 NYTIRITD 302 + IRI + Sbjct: 71 RFAIRILE 78 >gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13] Length = 410 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 8/184 (4%) Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190 E I + +Q ++ E + DY ++ R E + Sbjct: 231 ETNQVSEVIQETEKPTSQANESSYEQRNQEQTASTADYYQREEERSVTEAPIREHAYAGG 290 Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250 S+ P + + + + E + + +P L++ + + L + Sbjct: 291 HERPSN-----PAPRTQQAVNVQPAVFSSFETTTVEESEPNNLNML-LDIPLQVTVELGR 344 Query: 251 T--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 T ++KD++ L G +I + N K I E+ + +++ +R+TD ++ Sbjct: 345 TKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDESFGVRVTDIVSQTD 404 Query: 309 KSLK 312 + K Sbjct: 405 RIRK 408 >gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae] Length = 309 Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYT 297 V + I+ L ++ L G V+P L +G+ + + L +G+N Sbjct: 229 RVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVVIGENLG 288 Query: 298 IRITDR 303 +RI Sbjct: 289 VRIAHT 294 >gi|157962536|ref|YP_001502570.1| pyridoxal-dependent decarboxylase [Shewanella pealeana ATCC 700345] gi|157847536|gb|ABV88035.1| Pyridoxal-dependent decarboxylase [Shewanella pealeana ATCC 700345] Length = 548 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 47/121 (38%), Gaps = 2/121 (1%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ + +LS +E+ +++ + + + E + + ++ + ++ Sbjct: 18 TVPEAPDSTLSVIEQNISQNLMGFLQESVVAVEKPLSEVELDFQQYHIPAAPQFVSDYAD 77 Query: 178 NEF--VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235 N + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 78 NMMQTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQV 137 Query: 236 Y 236 Sbjct: 138 L 138 >gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ] gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ] Length = 155 Score = 38.9 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K ++ L G V+ + NG I E+ V Sbjct: 75 IMDIPVKLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVVDD 134 Query: 295 NYTIRITDRINFDQK 309 Y IRIT+ I ++ Sbjct: 135 KYGIRITEIITPSER 149 >gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName: Full=Flagellar motor switch protein MopA Length = 106 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 26 ILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVSD 85 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 86 KYGVRITDIITPSERMRR 103 >gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17] gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17] Length = 172 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%) Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269 + + S++ + P + V I + +++++ L G VI Sbjct: 67 VRAAPMEEFSSDSVNTSKGSPDLDVIMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDR 126 Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IR+TD ++ ++ + Sbjct: 127 LAGEPLDVLVNGTLIAHGEVVMVNDKFGIRLTDVMSPGERIKR 169 >gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis 11-1] Length = 109 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G VI + NG I E+ + Sbjct: 30 ILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVVVIND 89 Query: 295 NYTIRITDRINFDQKSLK 312 + +R+TD ++ ++ + Sbjct: 90 RFGVRLTDVVSPSERIRR 107 >gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016] gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 396 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K ++KD++ L G ++ + + NGK++ E+ + + Sbjct: 317 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 376 Query: 295 NYTIRITDRINFDQKS 310 N+ +RI I+ + + Sbjct: 377 NFGVRIKSIISSEDRI 392 >gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC 700345] Length = 118 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V + + + +L ++ + G V+ + NG + E+ V Y Sbjct: 42 QLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 101 Query: 297 TIRITD 302 +R+ + Sbjct: 102 GVRLLE 107 >gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555] gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555] Length = 392 Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 35/76 (46%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I + K ++KD++ L G ++ + + NGK++ E+ + + Sbjct: 313 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 372 Query: 295 NYTIRITDRINFDQKS 310 N+ +RI I+ + + Sbjct: 373 NFGVRIKSIISSEDRI 388 >gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137 str. F0430] Length = 399 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++KD++ L G ++ + NGK + E+ + +N Sbjct: 321 LDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 380 Query: 296 YTIRITDRINF 306 + +RIT+ ++ Sbjct: 381 FGVRITEIVSP 391 >gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae WPP163] Length = 137 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 5/106 (4%) Query: 212 ISLSSQNKSENQSEDLIDPFA-----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 ++ + +S D DP + V + + K T+K+++ L G V+ Sbjct: 29 EKPAATTEGIFKSLDGHDPLGALQDIDLILDIPVKLTVELGRTKMTIKELLRLTQGSVVA 88 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V Y +RITD + ++ + Sbjct: 89 LDGLAGEPLDILINGYLIAQGEVVVVSDKYGVRITDIMTPSERMRR 134 >gi|299066543|emb|CBJ37733.1| protein of unknown function [Ralstonia solanacearum CMR15] Length = 321 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 +++ +SE ++ + + + V ++ + L + L++G VI H + Sbjct: 231 AATERRSEALLTPVLSALSAEPLSMTVELNPV----ELGLGTLTGLQVGDVIRIPHALEM 286 Query: 274 CAILSANGKEIY-SCELGRVGKNYTI 298 ++ A+ + LGR+ I Sbjct: 287 PLLVRADDGALLCQAFLGRLDGQKAI 312 >gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia phytofirmans PsJN] gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia phytofirmans PsJN] Length = 327 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 1/68 (1%) Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRIT 301 D I TL +++ L+ G + + L G EL + +RI Sbjct: 256 DAVIGTLSLTLDELMRLRTGSTVSLQQPVGRHAIRLLCQGIPFARGELIDIDDALGVRIV 315 Query: 302 DRINFDQK 309 D + Sbjct: 316 DLAHMSDT 323 >gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246] Length = 117 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + I R+ + +++TL G V+ L+ G E+ V Sbjct: 37 ESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVV 96 Query: 293 GKNYTIRITDRINF 306 G+++ +RI + + Sbjct: 97 GEHFAVRIKNLLPP 110 >gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ubonensis Bu] Length = 211 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 2/96 (2%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVI 265 ++ + + + S D A +T V++ + L ++ L+ G VI Sbjct: 105 IREMPLEPTRTDTPPTLSPDAPPHEAPRTLDALAVDLRFELPSTSMPLGELAVLQPGAVI 164 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + L VG+ +R+ Sbjct: 165 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 200 >gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus Koribacter versatilis Ellin345] gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus Koribacter versatilis Ellin345] Length = 109 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 QSED+ L + + + + T++ ++ L+ G V+ + T L Sbjct: 23 ESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDLPL 82 Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302 NG + E V Y +R+T+ Sbjct: 83 RVNGALLAWSEFEVVDNRYGVRLTE 107 >gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 98 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 34/70 (48%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 ++ + VN+ R+ K+ +KD+ L +G ++ + + + K++ E + Sbjct: 27 KQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGIGEAILM 86 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 87 DENFGIVISE 96 >gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 356 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + + P ++ + ++N ++ D L + + ++ + TL Sbjct: 245 GETLEWLGPLRSVTRHHAAHTFNRNDLMSEITASPD-LDTSLDDLPLTLVCQLGTVELTL 303 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + G ++P L NG+ I +L +G +R Sbjct: 304 AQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLVSIGDGLGVR 349 >gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum L-1] Length = 112 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ + + + T+L+ +V+ L G V+ + + NG I E+ V Sbjct: 31 ADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVTVNGR 90 Query: 296 YTIRITDRINFDQKS 310 Y IRI + + + Sbjct: 91 YGIRIVEIAAAESRL 105 >gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC 43541] Length = 393 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++KD++ L G ++ + NGK + E+ + +N Sbjct: 315 LDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 374 Query: 296 YTIRITDRINF 306 + +RIT+ ++ Sbjct: 375 FGVRITEIVSP 385 >gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon 786 str. D14] Length = 415 Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++ + + L +T +KD++ L G +I + N K I E+ + +N Sbjct: 337 MDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 396 Query: 296 YTIRITDRINFDQKS 310 + +R+TD ++ + Sbjct: 397 FGVRVTDIVSQWDRI 411 >gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 356 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253 + + P ++ + ++N ++ D L + + ++ + TL Sbjct: 245 GETLEWLGPLRSVTRHHAAHTFNRNDLMSEITASPD-LDTSLDDLPLTLVCQLGTVELTL 303 Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + G ++P L NG+ I +L +G +R Sbjct: 304 AQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLVSIGDGLGVR 349 >gi|300693141|ref|YP_003749114.1| hypothetical protein RPSI07_mp0100 [Ralstonia solanacearum PSI07] gi|299075178|emb|CBJ34461.1| conserved membrane protein of unknown function [Ralstonia solanacearum PSI07] Length = 361 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 111 LLGASHETIPQLYNRS----LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166 LLGA+ + R+ LS++E + + T+ IS L T + D Sbjct: 265 LLGAARASSDAPAARATADVLSSMEDRRIRDTLIGISRALR--FGTV--ARLTHNRPADS 320 Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203 + + L+ E + + IE + F+ PQ Sbjct: 321 EPASRLPGPLTAESALALRFSSEIEQLRGEFLATAPQ 357 >gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A] Length = 80 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 25/73 (34%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +++V++ + + V+ L G +I E+ + N I S + Sbjct: 6 KVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMVNRNRI 65 Query: 297 TIRITDRINFDQK 309 T+ + + Sbjct: 66 TVEVKQMLPRAPD 78 >gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10] gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d] gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20] gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464] gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16] gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30] gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57] gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470] gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51] gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A] gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01] Length = 155 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 39/100 (39%) Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + S N +L P + V+I + T+++++ L G VI Sbjct: 52 MEEFGSAPPPINLPANLDGPNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRL 111 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V + + IR+TD I+ ++ Sbjct: 112 AGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERI 151 >gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180] gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908] gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24] gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018] gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1] gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695] gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3] Length = 118 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V + + + +L ++ + G V+ + NG + E+ V Y Sbjct: 42 QLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 101 Query: 297 TIRITD 302 +R+ + Sbjct: 102 GVRLLE 107 >gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99] gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27] gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12] gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38] gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99] gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27] gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12] gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128] gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38] gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8] gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7] Length = 123 Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52] Length = 123 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1] gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1] Length = 123 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 127 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Query: 212 ISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFL 268 +L+ QN + + + + F+ + L++ + + L K T+K+++ L G V+ Sbjct: 21 EALNEQNAAGSTEQTAVPQFSEEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLD 80 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IRITD I ++ + Sbjct: 81 GLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSERMHR 124 >gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 83 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 3 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 62 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 63 KYGVRITDIITPSERMRR 80 >gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC 11568] Length = 83 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + ++V I + ++ ++ + G VIP EK + AN + E+ Sbjct: 3 QIEAVDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEIRD 62 Query: 294 KNYTIRITDRIN 305 I +T + Sbjct: 63 DRIAITVTRPAD 74 >gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis Ellin345] Length = 252 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L+ L + ++N S + +L+V + R ++ L+D++ L+ G V+ Sbjct: 152 LRKKLQPDPAAVSADNHSVQSTNLDLLLDVELDVTL--RFGQREMLLQDILELQSGSVVE 209 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 + L +G+ I + V NY +R+ + Sbjct: 210 LDREIQDPVELLLDGRVIARGSVVVVDGNYGLRVAE 245 >gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 131 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 ++ V + + + D++ L G VIP HR + NG+ Sbjct: 51 ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGR 98 >gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J2-064] Length = 99 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Exiguobacterium sp. AT1b] Length = 376 Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V ++ + L +T ++++V+ L G +I + N + I E+ + +N+ Sbjct: 300 DVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGEPVDIYVNQQRIARGEVVVIEENF 359 Query: 297 TIRITDRINFDQKS 310 +R+T+ I ++ Sbjct: 360 GVRVTEIIQPHERI 373 >gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 351 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T + ++N S ++ D D +L + + ++ Sbjct: 236 ARHQGETLEWLGPLRTFSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344 >gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio ammonificans HB-1] Length = 83 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + I + K V+ LK G +I + ++ N +E EL + Sbjct: 12 ERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLNDQEFGIGELIVI 71 Query: 293 GKNYTIRITDRI 304 ++R+ D + Sbjct: 72 NDKVSLRLVDLV 83 >gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae 12198] Length = 112 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 ED+I + + + K T+K+++ + G VI + N + + Sbjct: 21 EDMIQSYEG-LLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIV 79 Query: 285 YSCELGRVGKNYTIRITDRINFD 307 E+ KN IR+ + ++ + Sbjct: 80 GRGEVMVYEKNLAIRLNEILDSN 102 >gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972] gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC 11218] Length = 128 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 31/74 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + ++ ++ LK++++++ VI +E + NG + + Sbjct: 53 IRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDG 112 Query: 295 NYTIRITDRINFDQ 308 Y +++ +N + Sbjct: 113 KYGVQVLALVNNEH 126 >gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6] Length = 137 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 Y +RITD I ++ + Sbjct: 117 KYGVRITDIITPSERMRR 134 >gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 99 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs] gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Alkaliphilus oremlandii OhILAs] Length = 385 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + + L +T + +++ G +I + NG+ + + E+ + +NY Sbjct: 308 DVPLKITVELGRTVKKISEILEFGPGTIIELDKLVGEPLDILVNGQYVANGEVVVIDENY 367 Query: 297 TIRITDRINFDQKS 310 IR+TD +N ++ Sbjct: 368 GIRVTDIVNPAKRL 381 >gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris str. B100] gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. campestris] Length = 112 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%) Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + +D D + V + + + +++++ L G V+ + N Sbjct: 19 AERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVN 78 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G I E+ + + IR+TD ++ ++ + Sbjct: 79 GTLIAHGEVVVINDRFGIRLTDVVSPSERIRR 110 >gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262] gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-175] gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262] gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes] gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071] gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 99 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC2047] Length = 132 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%) Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288 P + V + + T+++++ L G VI + NG I E Sbjct: 47 SPELDVILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGE 106 Query: 289 LGRVGKNYTIRITDRINFDQKS 310 + V + + IR+TD ++ ++ Sbjct: 107 VVVVNEKFGIRLTDVVSPSERI 128 >gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp] gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp] Length = 155 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + S ++ L P + V+I + T+++++ L G VI Sbjct: 49 RAPMEEFGSAPQASGLPVSLDGPNLDVILDIPVSISMEVGNTDITIRNLLQLNQGSVIEL 108 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V + + IR+TD I+ ++ Sbjct: 109 DRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERI 151 >gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland 1988] gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S] gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161] gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003] gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e] gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str. 1/2a F6854] gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes] gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes] gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900] gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria monocytogenes J2818] Length = 99 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 88 DENFGIVISE 97 >gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4] Length = 420 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 9/161 (5%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNF 95 +G + ++ V+I+ + + + F + + Sbjct: 62 EIGNISFGSAATALSTLLNQKVEITTPTLSLVESKELPAEFPQPHVAVHVEYTEGFEGMN 121 Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI----SAVLNQCIS 151 + + + +LG LS + + + Q+ S ++ + Sbjct: 122 LLVIKTGDAAIIADLMLGGDGTNPASD----LSDMHVSAVQEAMNQMMGSASTSMSTVFN 177 Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + SP D D+ + +N ++ + I+ + I Sbjct: 178 KRVDISPPGIDLMDLKHNVGTSNVPEDQILVKISFRLKIGE 218 >gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 351 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249 + + + P T + ++N S ++ D D +L + + ++ Sbjct: 236 ARHQGETLEWLGPLRTFSPHYVSHTFNRNDSMSEMTDGSD-LDTSLDELPLTLVCQLGSV 294 Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + TL + + G ++P L NG+ I EL +G +R Sbjct: 295 ELTLAQLREMAPGSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVR 344 >gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium 9_2_54FAA] Length = 145 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 65 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 124 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 125 KFGVRITDIITPSERMRR 142 >gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris BisA53] Length = 132 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282 ++ V + + + D++ L G VIP HR + NG+ Sbjct: 51 ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGR 98 >gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65] gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65] Length = 185 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 34/96 (35%) Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274 D P + V+I + + +++++ L G VI Sbjct: 86 EFGEGENQPKSDGKSPELDVILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEP 145 Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V + IR+TD I+ ++ Sbjct: 146 LDVLVNGTLIAHGEVVMVNDKFGIRLTDVISQAERI 181 >gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 100 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 29 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 88 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 89 DENFGIVISE 98 >gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes Clip81459] gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes FSL J1-208] gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes L99] gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208] gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378] gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023] gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 100 Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E + Sbjct: 29 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 88 Query: 293 GKNYTIRITD 302 +N+ I I++ Sbjct: 89 DENFGIVISE 98 >gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens 16/4] Length = 394 Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Query: 201 IPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVV 257 +PQ T+ ++ + S +++ ID L+V +D + L +T T++D++ Sbjct: 292 MPQPTINVQPAQFTPFGPGFSAQFAQENIDLI------LDVPLDVTVELGRTNKTIQDIL 345 Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 G +I + NGK + E+ + +++ +RIT+ I Sbjct: 346 DFAPGTIIELNKIAGEPIDVLVNGKYVAKGEVVVIEESFGVRITEIIKE 394 >gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM 12168] Length = 396 Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T +K+++ + G +I + N K I E+ + +N Sbjct: 320 MDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDEN 379 Query: 296 YTIRITDRINF 306 + +R+T+ ++ Sbjct: 380 FGVRVTEILSP 390 >gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001] Length = 115 Score = 38.1 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 40 EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + + +T+ I D Sbjct: 100 DERLGVTMTEIIKNDH 115 >gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] Length = 388 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 33/97 (34%) Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263 T+L + N + T +L V + + + T++DV TL G Sbjct: 284 ATILSVLNPEEGPMSDENNTAAGAAPSEGVDTGELEVTLTFELERRLMTVRDVETLAPGY 343 Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300 F L ANGK + L + +++ Sbjct: 344 TFAFGGDALAPVTLYANGKSVGKGRLVDLNGTLGVQV 380 >gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1] Length = 137 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 L S Q ++ P + V + + ++++++ L G VI Sbjct: 32 PELEDFSQQARAAAIGGGPGTPNLDVILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELD 91 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + NG I E+ V + + IR+TD I+ ++ Sbjct: 92 RLAGEPLDVMVNGTLIAHGEVVVVNEKFGIRLTDVISPQERI 133 >gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus degradans 2-40] gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40] Length = 135 Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 56 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 115 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 116 KFGIRMTDVISPSERI 131 >gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656] gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1] Length = 404 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 79/211 (37%), Gaps = 7/211 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 + + ++ V+IS + I+ +++ VF + + + Sbjct: 37 EIANISMGTAATTLFSLVNRRVEISTPVVSFSNWDKIVDEYEKPCVFIKIGYTQGLNGSN 96 Query: 96 FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + V + + ++G I ++ LS + + + + + + L+ ++ T Sbjct: 97 ILVLKEKDVKIITDLMMGGDGTNINGEIGELHLSAISEAMNQM-MGSSATSLSSMLNRTI 155 Query: 155 ESSPNLEDFYDIDYL--KKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT-T 210 + SP + + D+ + + +E I+ +M I ++ S + + P + + Sbjct: 156 DISPPIAEVVDLKNTLNEGEIDSFLSEEFVKISFHMEIGDLVDSEIMQLYPPAFVKEMCK 215 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 +S + + +++ +ED+ T + Sbjct: 216 GVSQNMELDTQSVTEDVPQSSNTATQAAPIQ 246 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 65/180 (36%), Gaps = 5/180 (2%) Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E + + N P +D ++ N+ + NE + NMN Sbjct: 220 NMELD-TQSVTEDVPQSSNTATQAAPIQQP--QDSGSMNNASANSQGMINENMMNSNMNS 276 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + ++ + ++Q + + ++V ++ + L Sbjct: 277 QNMMNQGMMNQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVEL 336 Query: 249 KKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T ++ +++ G++I + NGK + E+ + +++ +RIT+ +N Sbjct: 337 GRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNS 396 >gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11] Length = 372 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSA 279 + E + +++ + + L +T +KD++ L G +I + Sbjct: 279 DADEQTVSEKENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLAGEPVDILV 338 Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 NGK I E+ + +N+ +RI D + ++ Sbjct: 339 NGKFIAKGEVVVIDENFGVRILDIVKQSKRI 369 >gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4] gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4] Length = 122 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ + Y +R Sbjct: 49 VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108 Query: 300 ITDRINF 306 + + + Sbjct: 109 LIEVHDS 115 >gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01] gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01] Length = 122 Score = 38.1 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ + Y +R Sbjct: 49 VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108 Query: 300 ITDRINF 306 + D + Sbjct: 109 LIDVHDS 115 >gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|973195|gb|AAB00544.1| FliY [Treponema pallidum] gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum SS14] gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 348 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 95/308 (30%), Gaps = 37/308 (12%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSN 94 S + V IS + + V + ++ + Sbjct: 46 QSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFSRVIPDMLVATVIDFEGEFAGD 105 Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + L+ + SHE Q+ + LS V + + + AQ+S + + + Sbjct: 106 HLFLMAPEFAQKLVNLV---SHEDNDQIDDMGLSVVSETITQYVSAQLSTLEARNVQNVS 162 Query: 155 ESSPNLEDFYDIDYLKKNTNRLSN---------------EFVTTINMNMTIENVASSFVL 199 +P ++ RL E V+ M IE + + Sbjct: 163 -VAPAESVQVPKAMVRFPPQRLCVFTYTVELDGTSYTLWELVSEQLMVRIIERMGGAMQR 221 Query: 200 IIPQETLLKTTL----ISLSSQNKSENQSEDLIDPFARKT---------YQLNVNIDTRI 246 PQ + + + + + S + P ++V ++ + Sbjct: 222 --PQAQVGNSQMGGVNMQMGIGAASPSVQSVQFHPLQNAAGGAEQGNIGLIMDVFMEVTV 279 Query: 247 NLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304 L + +KD++ + G +I + N K I E+ + +N+ +R+T+ + Sbjct: 280 ELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVNHKLIAKGEVVVIDENFGVRVTEIL 339 Query: 305 NFDQKSLK 312 + ++ Sbjct: 340 SPGERIAD 347 >gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum JW20] Length = 398 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V + + L +T +KD++ G +I + NGK I E+ + ++ Sbjct: 324 MDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDES 383 Query: 296 YTIRITDRINFDQKS 310 + +RITD ++ ++ Sbjct: 384 FGVRITDILHPSKRL 398 >gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 2360] gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Clostridium thermocellum DSM 1313] Length = 406 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V + + L +T +KD++ G +I + NGK I E+ + ++ Sbjct: 332 MDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDES 391 Query: 296 YTIRITDRINFDQKS 310 + +RITD ++ ++ Sbjct: 392 FGVRITDILHPSKRL 406 >gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 156 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 38/101 (37%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + Q ++ D + V + + + +++++ L G V+ Sbjct: 54 SPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGA 113 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ + + IR+TD ++ ++ + Sbjct: 114 GEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRR 154 >gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC 27405] gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC 27405] Length = 406 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V + + L +T +KD++ G +I + NGK I E+ + ++ Sbjct: 332 MDVPLQVTVELGRTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDES 391 Query: 296 YTIRITDRINFDQKS 310 + +RITD ++ ++ Sbjct: 392 FGVRITDILHPSKRL 406 >gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC 43531] Length = 396 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++K+++ L G ++ + NGK + E+ + +N Sbjct: 318 LDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDEN 377 Query: 296 YTIRITDRINF 306 + +RIT+ ++ Sbjct: 378 FGVRITEIVSP 388 >gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 379 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRVG 293 QL V + ++ + TL ++ L+ G V P + + N + EL +G Sbjct: 305 LSQLPVELSLQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG 364 Query: 294 KNYTIRITD 302 +RIT+ Sbjct: 365 NQLGVRITE 373 >gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198] Length = 136 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 56 IMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 115 Query: 295 NYTIRITDRINFDQKSLK 312 Y IRITD I ++ + Sbjct: 116 KYGIRITDIITPSERMRR 133 >gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella piezotolerans WP3] Length = 115 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V + + + +L ++ + G V+ + NG + E+ V Y Sbjct: 39 QLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 98 Query: 297 TIRITD 302 +R+ + Sbjct: 99 GVRLLE 104 >gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium sp. 4-46] Length = 101 Score = 37.7 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +L V++ + + + ++ + G VI + + AN I ++ G Sbjct: 4 LEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINFDQ 308 ++ +T+ I Sbjct: 64 RISVEVTELIRKAD 77 >gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681] gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681] Length = 436 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +++ + + L +T +KD++ L G +I + N K I E+ + +N Sbjct: 358 MDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 417 Query: 296 YTIRITDRINFDQKS 310 + +R+TD ++ + Sbjct: 418 FGVRVTDIVSQWDRI 432 >gi|167905067|ref|ZP_02492272.1| hypothetical protein BpseN_22674 [Burkholderia pseudomallei NCTC 13177] Length = 83 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 6/81 (7%) Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277 +++ + + P + QL + + ++ DV+ L+ G V+P T A + Sbjct: 2 SRARSVKRERPSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRL--HTPARV 55 Query: 278 SANGKEIYSCELGRVGKNYTI 298 + ++++ + + Sbjct: 56 MTHDAQLFTASIAEHNGKLCL 76 >gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium nodulans ORS 2060] gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium nodulans ORS 2060] Length = 101 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L V++ + + + ++ + G VI + + AN I ++ G Sbjct: 4 LEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVVTGN 63 Query: 295 NYTIRITDRINF 306 ++ +T+ I Sbjct: 64 RISVEVTELIRK 75 >gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855] gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855] Length = 250 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +V+++ R+ L ++ L DV+ L G V+ + ANG+ I E + + Sbjct: 172 ADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQ 231 Query: 296 YTIRITDRINFDQK 309 + +RIT+ + + Sbjct: 232 FGVRITNLASEGHR 245 >gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320] gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320] gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906] Length = 136 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K +++L G V+ + NG I E+ V Sbjct: 56 IMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 115 Query: 295 NYTIRITDRINFDQKSLK 312 Y IRITD I ++ + Sbjct: 116 KYGIRITDIITPSERMRR 133 >gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter carbinolicus DSM 2380] Length = 103 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKK--TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ ++ + + +KD++ L+ G +I L N + I E V Sbjct: 25 LDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVMVKDR 84 Query: 296 YTIRITDRINFDQKS 310 Y +R+TD ++ ++ Sbjct: 85 YGLRLTDVVSPAERL 99 >gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica] gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica] gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica] gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica] gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703] gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica] gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)] gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 307 Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 QL V + + + + +L+ G +I L ANG+ + L + Sbjct: 231 TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEI 290 Query: 293 GKNYTIRIT 301 +RI Sbjct: 291 QGRLGVRIE 299 >gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3] Length = 119 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + ++ +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus A6] Length = 238 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + +++ I + +++D + L+ G+VI A + NG+ I E+ V + Sbjct: 162 ISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQ 221 Query: 295 NYTIRITDRINF 306 +Y +RIT ++ Sbjct: 222 DYAVRITRILDT 233 >gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 307 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 24/69 (34%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 QL V + + + + +L+ G +I L ANG+ + L + Sbjct: 231 TDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEI 290 Query: 293 GKNYTIRIT 301 +RI Sbjct: 291 QGRLGVRIE 299 >gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 303 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ T+ Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum UT26S] Length = 112 Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ + + + T+L+ +V+ L G V+ + + NG I E+ V Sbjct: 31 ADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVVTVNGR 90 Query: 296 YTIRITDRINFDQKS 310 Y IRI + + + Sbjct: 91 YGIRIVEIAAAESRL 105 >gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118] Length = 112 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 38/101 (37%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + + Q ++ D + V + + + +++++ L G V+ Sbjct: 10 SPATFDSLQAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGA 69 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ + + IR+TD ++ ++ + Sbjct: 70 GEPLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERIRR 110 >gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8] gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8] Length = 236 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 238 LNVNIDTRINL--KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 +V+++ R+ L ++ L DV+ L G V+ + ANG+ I E + + Sbjct: 158 ADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVIDEQ 217 Query: 296 YTIRITDRINFDQK 309 + +RIT+ + + Sbjct: 218 FGVRITNLASEGHR 231 >gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1] Length = 153 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ V Sbjct: 74 IMDIPVVLSMELGNTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVND 133 Query: 295 NYTIRITDRINFDQKSLK 312 Y IR+TD ++ ++ + Sbjct: 134 KYGIRLTDVVSPSERIRR 151 >gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str. Sheeba] Length = 123 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + L ++ + G VI NG+ I E+ Sbjct: 39 KNLLDMEIIFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98 Query: 293 GKNYTIRITDRINFD 307 +N IR+ + ++ + Sbjct: 99 ERNLAIRLNEILDSN 113 >gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 127 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 3/104 (2%) Query: 212 ISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLK--KTTLKDVVTLKIGQVIPFL 268 +++ Q+ + F+ + L++ + + L K T+K+++ L G V+ Sbjct: 21 EAMTEQHAAGITDTMAAPQFSDEMNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLD 80 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ V + IRITD I ++ + Sbjct: 81 GLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSERMHR 124 >gi|295666972|ref|XP_002794036.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226277689|gb|EEH33255.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 1431 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 11/199 (5%) Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA--KRTIAQISAV 145 + + I ++V+ ++EN L T Q + E L+ + + A Sbjct: 913 ARNDDFHIIIVAKTDMVVKIVENYLIGKGFTHTQPAADTSGDTELALSSGQLSFGVRVAT 972 Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF----VTTINMNMTIENVASSFVLII 201 + + + D ++ + F + + + N + Sbjct: 973 DERISQPYKTPVAIIALDNSFDAENPAIRQIRSSFSPTDSLLPVIRLLVSNTLEHIERCL 1032 Query: 202 PQ-ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 PQ L K L+ +Q+ S+ E D + + V + L+ V ++ Sbjct: 1033 PQTSELTKLHLLVKCTQDLSDTAGELQDDALGAQENAVEVAL----YLRTEPSARVWSVA 1088 Query: 261 IGQVIPFLHREKTCAILSA 279 ++IP + T L A Sbjct: 1089 AVELIPVETPDGTPIALEA 1107 >gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582] Length = 138 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 58 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 117 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 118 KFGVRITDIITPSERMRR 135 >gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus cellulosilyticus DSM 2522] Length = 398 Score = 37.7 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ ++ + L +T ++KD++ L G +I + N + I E+ + +N Sbjct: 321 LDIPLEVTVELGRTKRSIKDILELTQGSIIELDKLAGEPVDILVNQRLIAKGEVVVIDEN 380 Query: 296 YTIRITDRINFDQKS 310 + +R+TD ++ ++ Sbjct: 381 FGVRVTDIVSKRERL 395 >gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110] Length = 155 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + V + + + T+K ++ L G V+ + NG I E+ V Sbjct: 72 ERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVV 131 Query: 293 GKNYTIRITDRINFDQKS 310 + Y IR+TD + ++ Sbjct: 132 NEKYGIRLTDIVTPSERM 149 >gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira defluvii] Length = 124 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 42/99 (42%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 + +S +NQ+ + + + + +I + +++++ L G VI Sbjct: 22 VQPTSFPPVDNQNAVPANKNIEFVLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLA 81 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 + N K + E+ V + + IR+TD ++ +Q+ Sbjct: 82 GEPMEVLVNNKLVARGEVVVVNEKFGIRLTDVVSPNQRI 120 >gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 303 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ T+ Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|254565519|ref|XP_002489870.1| Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp [Pichia pastoris GS115] gi|254572806|ref|XP_002493512.1| Protein component of the large (60S) ribosomal subunit [Pichia pastoris GS115] gi|238029666|emb|CAY67589.1| Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp [Pichia pastoris GS115] gi|238033311|emb|CAY71333.1| Protein component of the large (60S) ribosomal subunit [Pichia pastoris GS115] gi|328350284|emb|CCA36684.1| 60S ribosomal protein L8 [Pichia pastoris CBS 7435] gi|328354663|emb|CCA41060.1| 60S ribosomal protein L8 [Pichia pastoris CBS 7435] Length = 254 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 +L +G ++P + I + K +GR NY I I + ++ +K Sbjct: 94 ASLNVGNILPLGALPEGTIISNVEAKPGDKGTIGRTSGNYVIVIGHNVEENKTRVK 149 >gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria AMMD] Length = 381 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + S + D R L V++ + L ++ TL+ G VI Sbjct: 275 IREMPLEPTRTDTPSATTHDASADDAPRSLDSLAVDLRFELPPTSIPLGELGTLQPGAVI 334 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + +L VG+ +R+ Sbjct: 335 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 370 >gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13] Length = 137 Score = 37.7 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 57 ILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD 116 Query: 295 NYTIRITDRINFDQKSLK 312 + +RITD I ++ + Sbjct: 117 KFGVRITDIITPSERMRR 134 >gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 346 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 4/99 (4%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262 QE + +T + + + ++ + + P +L V + L ++ L+ G Sbjct: 244 QEQVSQTPSVPPVAHSVDDDPAPNESSPIW--VGELPVELSFAFEPLALKLAELSALRPG 301 Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301 V+P ++ ANG+ + EL V +T Sbjct: 302 DVVPLESG--VRLLIHANGRPVGEAELVEVEGVLAAEVT 338 >gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium SS3/4] Length = 445 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT--LKDVVTLKIGQVI 265 + LI ++ E+ + + A + + V ++ + + +T +KD++ G ++ Sbjct: 338 EPALIRPANAPGLESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLV 397 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 A L NG+ + ++ V N+ IRITD + D Sbjct: 398 VLDKMAGEQADLYVNGQCVARGDIVVVEDNFGIRITDIVTRD 439 >gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629] Length = 404 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 65/180 (36%), Gaps = 5/180 (2%) Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188 +E + + N P +D ++ N+ + NE + NMN Sbjct: 220 NMELD-TQSVTEDVPQSSNTATQAAPIQQP--QDSGSMNNASANSQGMINENMMNSNMNS 276 Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248 + + ++ + ++Q + + ++V ++ + L Sbjct: 277 QNMMNQGMMNQNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVEL 336 Query: 249 KKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 +T ++ +++ G++I + NGK + E+ + +++ +RIT+ +N Sbjct: 337 GRTKKSISEILDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNS 396 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 78/211 (36%), Gaps = 7/211 (3%) Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SLSSWSSNF 95 + + ++ V+IS + I+ +++ VF + + + Sbjct: 37 EIANISMGTAATTLFSLVNRRVEISTPVVSFSNWDKIVDEYEKPCVFIKIGYTQGLNGSN 96 Query: 96 FIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154 + V + + ++G I ++ LS + + + + + + L+ ++ T Sbjct: 97 ILVLKEKDVKIITDLMMGGDGTNINGEIGELHLSAISEAMNQM-MGSSATSLSSMLNRTI 155 Query: 155 ESSPNLEDFYDIDYL--KKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKT-T 210 + SP + + D+ + + +E I+ +M I + S + + P + + Sbjct: 156 DISPPIAEVVDLKNTLNEGEIDSFLSEEFVKISFHMEIGELVDSEIMQLYPPAFVKEMCK 215 Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 +S + + +++ +ED+ T + Sbjct: 216 GVSQNMELDTQSVTEDVPQSSNTATQAAPIQ 246 >gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp. indica ATCC 9039] Length = 109 Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + ++ L+ + ++DL + ++ V + + + +++ L G VI Sbjct: 1 MSDESMTDLNMDHGETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVI 60 Query: 266 PFLHREKTCAILSANGKEIYSCEL 289 P HR + NG+ I E+ Sbjct: 61 PLDHRVGEPVDIVVNGRVIARGEV 84 >gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus B316] Length = 412 Score = 37.3 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 239 NVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V ++ + L +T + D++ G +I + NGK + E+ + +++ Sbjct: 344 DVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEVVVIEESF 403 Query: 297 TIRITDRIN 305 +R+T+ + Sbjct: 404 GVRVTEIVQ 412 >gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5] Length = 109 Score = 37.3 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 N+D + TL++V+ LK G ++ + N + + E+ + N+ Sbjct: 30 NLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLATAEIVVIEDNFA 86 >gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus sp. JDR-2] Length = 421 Score = 37.3 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ + + L +T +KD++ L G +I + N K I E+ + +N Sbjct: 343 LDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 402 Query: 296 YTIRITDRINFDQKS 310 + +R+TD ++ + Sbjct: 403 FGVRVTDIVSQWDRI 417 >gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 299 Score = 37.3 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 225 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 284 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 285 GVEIHEWLSES 295 >gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 261 Score = 37.3 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 187 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 246 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 247 GVEIHEWLSES 257 >gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM 19370] Length = 93 Score = 37.3 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++V + + + LKDV+ L V+ + NGK I E+ G Sbjct: 11 IMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVVAQGD 70 Query: 295 NYTIRITDRINFD 307 + +RI + + D Sbjct: 71 RFGLRIVELVGQD 83 >gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 303 Score = 37.3 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402] Length = 393 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T +K+++ + G +I + N K I E+ + ++ Sbjct: 316 MDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES 375 Query: 296 YTIRITDRINFDQKSLK 312 + +RIT+ ++ ++ Sbjct: 376 FGVRITEILSPAERISD 392 >gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis] gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis] Length = 150 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + T+++++ L G VI + NG I E+ V + Sbjct: 71 ILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 130 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 131 KFGIRMTDVISPSERI 146 >gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al Hakam] gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al Hakam] gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB108] gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus 03BB102] gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1] Length = 119 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 24/70 (34%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola] gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC 35405] Length = 393 Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T +K+++ + G +I + N K I E+ + ++ Sbjct: 316 MDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEES 375 Query: 296 YTIRITDRINFDQKSLK 312 + +RIT+ ++ ++ Sbjct: 376 FGVRITEILSPAERISD 392 >gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM 12260] Length = 374 Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 34/79 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + T+ +V+ + G V+ + NGK + E+ + + Sbjct: 294 IVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVVVIDE 353 Query: 295 NYTIRITDRINFDQKSLKN 313 ++ IR+T+ ++ ++ Sbjct: 354 SFGIRVTEIVSRAERIRSM 372 >gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 303 Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|149189862|ref|ZP_01868142.1| putative flagellar motor switch protein [Vibrio shilonii AK1] gi|148836348|gb|EDL53305.1| putative flagellar motor switch protein [Vibrio shilonii AK1] Length = 270 Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 24/237 (10%), Positives = 75/237 (31%), Gaps = 30/237 (12%) Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121 + + + + S S ++ +++ L + T + Sbjct: 54 LVELDHVSLTELPQTNVDVTSVSVLKHSD-DGMLYVSMEPTMLMRLSDQFY----STSME 108 Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181 L+ + +L + +I+ +Q I+ E++ +F I + ++ + Sbjct: 109 RSGGELTNSDLRL----LQRIAKCASQWIAP--ETTWKQHEFEVIPGIG-----IAAKLS 157 Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241 + + V LI +TL+ ++ + + F ++ V Sbjct: 158 IYVRSQQALLAVTLDSALI---QTLIDELELTPNPH---------MASDFNHALHKTPVR 205 Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 ++ +++ L V+ LK ++P + + +++ + + Sbjct: 206 LNVQLSKTVLPLTQVLKLKADDILPIELLNNAPV--NIGKETLFTGRVAEQEGQLVL 260 >gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin] gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum] gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis] gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 303 Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum GMI1000] gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia solanacearum GMI1000] Length = 156 Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P ++ K + + + D+ + V + + K +K+++ L Sbjct: 50 PLSSVFKPLMPGEKTTAAAPRNDIDM-------ILDIPVQLTVELGRTKVPIKNLLQLAQ 102 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 G V+ + NG I E+ V + + IR+TD I ++ K Sbjct: 103 GSVVELDALAGEPMDVLVNGYLIAQGEVVVVNEKFGIRLTDIITPSERIRK 153 >gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107] gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107] Length = 133 Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + T+++++ L G VI + NG I E+ V + Sbjct: 54 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 113 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 114 KFGIRMTDVISPAERI 129 >gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium BAC17H8] Length = 110 Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298 +V + + + ++D++ L G VI + ANG I E+ VG+ + I Sbjct: 36 DVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGDPLDILANGTMIAKGEVVMVGERFGI 95 Query: 299 RITDRINF 306 R T+ ++ Sbjct: 96 RFTEIVDP 103 >gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 303 Score = 37.3 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg] gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 303 Score = 37.3 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter alkaliphilus AHT 1] Length = 150 Score = 37.3 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V +D + T+++++ L+ +I A L NGK + S E+ + N+ R Sbjct: 76 VTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDNFGFR 135 Query: 300 ITD 302 + + Sbjct: 136 VAE 138 >gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 303 Score = 37.3 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 303 Score = 37.3 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 303 Score = 37.3 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|167624719|ref|YP_001675013.1| pyridoxal-dependent decarboxylase [Shewanella halifaxensis HAW-EB4] gi|167354741|gb|ABZ77354.1| Pyridoxal-dependent decarboxylase [Shewanella halifaxensis HAW-EB4] Length = 548 Score = 37.3 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+ +++ + + + E + + Y I + + + Sbjct: 18 TVPEAPESTLSVIEQNISQNLMGFLQESVVAVEKPLSEVELDFQQ-YQIPSAPQFVSDYA 76 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 + + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 77 DNMMQTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 136 Query: 235 TY 236 Sbjct: 137 VL 138 >gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium IMCC1989] Length = 150 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%) Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280 + + I P + V I + T+++++ L G VI + N Sbjct: 57 DPTAGKAISPELDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPLNVLVN 116 Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G I E+ V + + IR+TD I+ ++ Sbjct: 117 GTLIAHGEVVVVNEKFGIRMTDVISPAERI 146 >gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa] gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa] Length = 284 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + R+ + +KD++ L G V+ + N K + E+ V Sbjct: 206 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 265 Query: 295 NYTIRITDRINF 306 Y +R+TD ++ Sbjct: 266 KYGVRLTDIVSP 277 >gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis HAW-EB4] Length = 118 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V++ + + +L ++ + G V+ + NG + E+ V Y Sbjct: 42 QLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGRY 101 Query: 297 TIRITD 302 +R+ + Sbjct: 102 GVRLLE 107 >gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum BKT015925] Length = 417 Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V ++ + L KT ++KDV+ L G +I + + NGK+I E+ V +N Sbjct: 338 LDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDEN 397 Query: 296 YTIRITDRINFDQK 309 + +RI + ++ +++ Sbjct: 398 FGVRIVNIVSGEER 411 >gi|168016719|ref|XP_001760896.1| predicted protein [Physcomitrella patens subsp. patens] gi|162687905|gb|EDQ74285.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1414 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS---HETIPQL 122 + + + S ++ + + + +L++ ++ LG + P+L Sbjct: 1034 KIQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYIDVFLGGDEKRPDLPPKL 1093 Query: 123 YNR-SLSTV 130 R L+ + Sbjct: 1094 MQRLPLTII 1102 >gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546] Length = 122 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K L D++ G VI + NG + E+ V + Y +R Sbjct: 49 VTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEKYGLR 108 Query: 300 ITDRINF 306 + D ++ Sbjct: 109 LIDVVDS 115 >gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp. SB155-2] Length = 83 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++++ + L T + ++++LK G VI + + N K++ E+ + Y Sbjct: 16 DISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIVVINDKY 75 Query: 297 TIRITD 302 +RI D Sbjct: 76 GVRIVD 81 >gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas ingrahamii 37] Length = 120 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + V++ + K TLK+++ +K V+ + NGK E+ +Y Sbjct: 48 DIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANGHY 107 Query: 297 TIRITDRINFD 307 ++ITD +N D Sbjct: 108 GVKITDIVNKD 118 >gi|163751973|ref|ZP_02159184.1| glutamate decarboxylase, putative [Shewanella benthica KT99] gi|161328131|gb|EDP99298.1| glutamate decarboxylase, putative [Shewanella benthica KT99] Length = 550 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ + +LS +E+ +++ + + + E + + + I + + + Sbjct: 20 TVPEAPDSTLSVIEQNISQNLMGFLQESVVAIEKPLSEIELDFQQ-HQIPSAPQFVSDYA 78 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 79 DEMMKTLVAHSVHTSSPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 138 Query: 235 TY 236 Sbjct: 139 VL 140 >gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3] Length = 116 Score = 36.9 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + I + +KD++ L G ++ K L NG I E+ Sbjct: 37 LMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAG 96 Query: 295 NYTIRITDRINFDQKS 310 + +R+ D ++ ++ Sbjct: 97 QFGLRLIDVVSPSERL 112 >gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 112 Score = 36.9 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ V Sbjct: 33 ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVVND 92 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ + Sbjct: 93 RFGIRLTDVVSPSERIRR 110 >gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e] Length = 111 Score = 36.9 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 4/101 (3%) Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261 P + + + + D A ++ V + + +L +++ + Sbjct: 6 PNDLDALLDDLPADTATAAHAPRRDPRQLLA----KIPVQLTLEVGTATVSLAELMNIDE 61 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 G V+ ++ NG + E+ G+NY +++ D Sbjct: 62 GTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENYGLKVID 102 >gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 111 Score = 36.9 bits (84), Expect = 3.6, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 38/99 (38%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 + + ++ + P + V++D + +K+++TL+ G ++ Sbjct: 13 MRVDLPEHEPAETTEARPVAHPRLDLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLD 72 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 + C + N + + E+ V + IRI + + Sbjct: 73 RQLDDCVDVRLNERTVARAEIVAVDDRFGIRIVEIVEER 111 >gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810] gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466] gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034] gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037] gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030] gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329] Length = 123 Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ V Y +R Sbjct: 50 VTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVNDKYGLR 109 Query: 300 ITDRINF 306 + D + Sbjct: 110 LIDVHDS 116 >gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans JCM 2831] Length = 110 Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 36 EQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARGEVVLV 95 Query: 293 GKNYTIRITDRINFD 307 + +T+ + + Sbjct: 96 EDRLGVTMTEIVKGE 110 >gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2] Length = 101 Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 43/97 (44%) Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 T+ + +S + SE + + + V + ++ + ++++V+ L G ++ Sbjct: 1 MTITTPASDSGSETKVSENDRKALDLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLA 60 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305 R L N K + E+ V +N+ I+IT+ + Sbjct: 61 QRATDPVGLFVNDKLVAYGEVVVVEENFGIKITEIVG 97 >gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct] Length = 158 Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE 137 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 138 KFGIRLTDVISPSERI 153 >gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Paenibacillus curdlanolyticus YK9] Length = 411 Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L++ + + L +T +KD++ L G +I + N K I E+ + +N Sbjct: 333 LDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDEN 392 Query: 296 YTIRITDRINF 306 + +R+TD ++ Sbjct: 393 FGVRVTDIVSQ 403 >gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. spizizenii str. W23] Length = 379 Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLKKT--TLKDVVTL 259 Q T K + +S S + P L++ + + L +T ++K+++ L Sbjct: 265 QGTPKKAAPVQVSPVEFSAFDPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILEL 324 Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + N + + E+ + +N+ +R+TD ++ ++ Sbjct: 325 SAGSIIELDKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375 >gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC 43969] Length = 129 Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 49 ILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD 108 Query: 295 NYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 109 KFGIRITDIITPSERMYR 126 >gi|160874720|ref|YP_001554036.1| pyridoxal-dependent decarboxylase [Shewanella baltica OS195] gi|160860242|gb|ABX48776.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS195] gi|315266960|gb|ADT93813.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS678] Length = 549 Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str. 'morsitans'] Length = 134 Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 3/111 (2%) Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLKK--TTLKDVVTLKI 261 +L T + S + + P L++ + + L + T+++++ L Sbjct: 21 SLGDTACPAPSRPEFPPASTTEGGSPLTEDLSLILDIPVKMTVELGRTRMTIRELLHLSQ 80 Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 V+P + + NG I E+ +G+ Y +RI D + ++ + Sbjct: 81 DAVVPLEGQAGEPLDILINGYLIARGEVVVMGEQYGVRIADIVTPAERMRR 131 >gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121] gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121] Length = 150 Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + +++++ L G V+ + NG I E+ V Sbjct: 71 IMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND 130 Query: 295 NYTIRITDRINFDQKSLK 312 Y IR+TD ++ ++ + Sbjct: 131 KYGIRLTDVVSPSERIKR 148 >gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 121 Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ V + + + +L +++ G VI + NG + E+ + + Sbjct: 44 KKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINEK 103 Query: 296 YTIRITDRINFDQKSLKN 313 Y +R+ D ++ ++ N Sbjct: 104 YGLRLIDVVDSPLNTMDN 121 >gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio sp. Ex25] gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25] Length = 123 Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ V Y +R Sbjct: 50 VTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLR 109 Query: 300 ITDRINF 306 + D + Sbjct: 110 LIDVHDS 116 >gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein [uncultured bacterium] Length = 117 Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 Y++ V + + + ++ L G V+ ++AN + I E+ V Sbjct: 41 EAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVVV 100 Query: 293 GKNYTIRITDRINFD 307 I+ITD I + Sbjct: 101 EDRLAIQITDIIRSN 115 >gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480] gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480] Length = 317 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + + + TTL + TL G V+P ++A G+ + EL V IR Sbjct: 253 LQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTLGQGELVEVNGKLAIR 312 Query: 300 I 300 I Sbjct: 313 I 313 >gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786] Length = 104 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + +++ + +TTL ++ ++ G V+ + A+G I E +G Sbjct: 34 DIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVTIGYGEFVEIGSRV 93 Query: 297 TI 298 + Sbjct: 94 AV 95 >gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4] gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens PA1] gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium chloromethanicum CM4] gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1] gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4] Length = 115 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 30/76 (39%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 40 EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99 Query: 293 GKNYTIRITDRINFDQ 308 + + +T+ I D Sbjct: 100 EERLGVTMTEIIKNDH 115 >gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2143] Length = 152 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V+I + + ++++++ L G VI + NG I E+ V + Sbjct: 73 IMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 133 KFGIRMTDVISPSERI 148 >gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L] gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L] gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus AH820] gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201] gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 119 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 24/70 (34%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III secretion and virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi] gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III secretion and virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 229 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE-LGRVGKN 295 Q+ V + + K T++ + + G+VIP + + AN I + LG Sbjct: 157 QVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEERIEIRANNVRIARGKLLGMENGA 216 Query: 296 YTIRITD 302 + +T Sbjct: 217 LGVELTQ 223 >gi|157375915|ref|YP_001474515.1| pyridoxal-dependent decarboxylase [Shewanella sediminis HAW-EB3] gi|157318289|gb|ABV37387.1| pyridoxal-dependent decarboxylase [Shewanella sediminis HAW-EB3] Length = 550 Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 TIP+ +LS +E+ +++ + + + E + ++ + I K + + Sbjct: 18 TIPEAPGSTLSVIEQNISQNLMGFLQESVVAVEKPLTEIERDFQE-HQIPAAPKFVSDYA 76 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 77 DEMMKTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 136 Query: 235 TY 236 Sbjct: 137 VL 138 >gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1] Length = 190 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + + I L++++ L ++ L NGK I EL V Sbjct: 107 LMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTVED 166 Query: 295 NYTIRITDRINFDQKS 310 ++ I+IT I ++ Sbjct: 167 HFGIKITSIITVQERM 182 >gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 408 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V ++ + L +T +++++ G +I + NGK I S E+ + +N Sbjct: 334 LDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDEN 393 Query: 296 YTIRITDRINFDQKS 310 + +RI I + + Sbjct: 394 FGVRIKSIIKPENRI 408 >gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica] Length = 303 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC 43970] Length = 129 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K T+K+++ L G V+ + NG I E+ V Sbjct: 49 ILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVVSD 108 Query: 295 NYTIRITDRINFDQKSLK 312 + IRITD I ++ + Sbjct: 109 KFGIRITDIITPSERMYR 126 >gi|304409686|ref|ZP_07391306.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS183] gi|307304042|ref|ZP_07583795.1| Pyridoxal-dependent decarboxylase [Shewanella baltica BA175] gi|304352204|gb|EFM16602.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS183] gi|306912940|gb|EFN43363.1| Pyridoxal-dependent decarboxylase [Shewanella baltica BA175] Length = 549 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B] gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01] gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B] Length = 123 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ V Y +R Sbjct: 50 VTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDKYGLR 109 Query: 300 ITDRINF 306 + D + Sbjct: 110 LIDVHDS 116 >gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica] Length = 303 Score = 36.9 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI] gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42] gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis str. CI] Length = 119 Score = 36.9 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71] Length = 117 Score = 36.9 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + I K +KD++ L G ++ K L NG I E+ Sbjct: 38 LMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVESAG 97 Query: 295 NYTIRITDRINFDQKS 310 + +R+ D ++ ++ Sbjct: 98 QFGLRLIDVVSPSERL 113 >gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp. BNC1] gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp. BNC1] Length = 354 Score = 36.9 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 P A L V +D + ++ TL+++ L G + + ANG L Sbjct: 272 PLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDLTRPVTILANGAPAGRGYL 331 Query: 290 GRVGKNYTIRITD 302 ++G + ++++ Sbjct: 332 VQIGDHMGVQLSH 344 >gi|157147123|ref|YP_001454442.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895] gi|157084328|gb|ABV14006.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895] Length = 294 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 72/202 (35%), Gaps = 19/202 (9%) Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL--STVEKKLAKRTIAQISAVLNQCI 150 N L++ +L + G S ++ + SL + E++L + +++ L C Sbjct: 85 GNVAFVIDRILLLNILHDYYGLSKDSSHVAPDESLRVTKTEERLRSKLGQELTQ-LVICK 143 Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ETLL 207 T E+ +K + + + + + I + SF +++ + +L Sbjct: 144 ETFGENL----------DIKVDYSTVISHWSWCITFTLE-GYDHGSFTILLDHHHVDQML 192 Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 ++ +++ R L + + R+ T+ + +K G +IP Sbjct: 193 AILRSPDAADSRAVKSVPLNPAQIERLFDSLPLKLSGRLASLNLTVAQISDIKPGDIIPI 252 Query: 268 LHREKTCAILSANGKEIYSCEL 289 E + ++I+ + Sbjct: 253 AINE--PLPVFIGKEQIFEAAI 272 >gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum ATCC 12472] Length = 116 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 ++ V + + +L D+ + G V+ + NG I E+ G Sbjct: 39 LRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGD 98 Query: 295 NYTIRITDRINFDQKSL 311 NY +R+ + + SL Sbjct: 99 NYGLRVVELNDLQLDSL 115 >gi|126173808|ref|YP_001049957.1| pyridoxal-dependent decarboxylase [Shewanella baltica OS155] gi|125997013|gb|ABN61088.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS155] Length = 549 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia ambifaria MC40-6] Length = 381 Score = 36.9 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + S + D R L V++ + L ++ TL+ G VI Sbjct: 275 IREMPLEPTRTDTPSVTTHDASADDAPRSLDSLAVDLRFELPPTSIPLGELGTLQPGAVI 334 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + +L VG+ +R+ Sbjct: 335 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 370 >gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 120 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ V Y +R Sbjct: 47 VTVTLEVASKEVALGDLMKAGEGSVIELDKMNGEPLDVKVNGSLMGHAEVVVVNDKYGLR 106 Query: 300 ITDRINF 306 + D ++ Sbjct: 107 LIDVVDE 113 >gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893] gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893] Length = 172 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 92 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ + Sbjct: 152 KFGIRLTDVISPGERIKR 169 >gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009] gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1] gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris CGA009] gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris TIE-1] gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris DX-1] Length = 80 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 24/73 (32%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +++V++ + + V+ L G +I E + AN I S + Sbjct: 6 KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRNRI 65 Query: 297 TIRITDRINFDQK 309 + + + Sbjct: 66 AVEVKQMLPRSPD 78 >gi|217973934|ref|YP_002358685.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS223] gi|217499069|gb|ACK47262.1| Pyridoxal-dependent decarboxylase [Shewanella baltica OS223] Length = 549 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TAPEDAGSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF] gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens QYMF] Length = 393 Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT--TLKDVVTLK 260 Q +L + + Q +S +Q + P Q +V + + L +T + +V+ Sbjct: 282 QPSLENSKINVQPVQFQSFDQQSNRGLPENIALIQ-DVPLSVTVELGRTVKKISEVLEFG 340 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310 G +I + NG+ + E+ + +NY IRITD + ++ Sbjct: 341 PGTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRL 390 >gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 329 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRV 292 + +V + + + + TL ++ L+ GQ++ + G + L + Sbjct: 253 ELEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVARGSLVEI 312 Query: 293 GKNYTIRIT 301 +RI Sbjct: 313 NGLLGVRID 321 >gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110] gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110] Length = 80 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 23/70 (32%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ V++ + + V+ L G +I E + AN + S + Sbjct: 6 KVTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLVDRNRI 65 Query: 297 TIRITDRINF 306 + + + Sbjct: 66 AVEVKQMLPR 75 >gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4] Length = 392 Score = 36.6 bits (83), Expect = 4.5, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T+ +K+++ G +I + NGK + E+ + ++ Sbjct: 323 MDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEVVVIEES 382 Query: 296 YTIRITDRI 304 Y IRIT+ I Sbjct: 383 YGIRITEII 391 >gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis] Length = 303 Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Syntrophothermus lipocalidus DSM 12680] Length = 400 Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T T+K+++ L G ++ + NGK I E+ + +N Sbjct: 322 MDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVVVIDEN 381 Query: 296 YTIRITDRINF 306 Y +R+T I+ Sbjct: 382 YGVRVTAIISP 392 >gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W] gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W] Length = 119 Score = 36.6 bits (83), Expect = 4.7, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 8 VSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNL 67 Query: 272 KTCAIL 277 + Sbjct: 68 GHKVDV 73 >gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 397 Score = 36.6 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 238 LNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V + + L +T ++K+++ L G ++ + NGK + E+ + +N Sbjct: 319 LDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVVVIDEN 378 Query: 296 YTIRITDRINF 306 + +RIT+ ++ Sbjct: 379 FGVRITEIVSP 389 >gi|194477137|ref|YP_002049316.1| Menaquinone biosynthesis protein [Paulinella chromatophora] gi|171192144|gb|ACB43106.1| Menaquinone biosynthesis protein [Paulinella chromatophora] Length = 635 Score = 36.6 bits (83), Expect = 4.8, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 6/109 (5%) Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95 S + + F+ +D +S S + +++ + + + W Sbjct: 456 ESFTKNLYPHIVESFRGSSGIDGTLSLAMGLSSVYGNLLLVSGDLALLHD--SNGWLWQQ 513 Query: 96 FIG-CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143 I +N+L + L++N G RS S E ++ +I Sbjct: 514 QISRLNNHLTVLLIDN--GGGGIFEQLPI-RSYSDTEGSISSINFERIF 559 >gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis L1-82] gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1] Length = 392 Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +T+ +K+++ G +I + NGK + E+ + ++ Sbjct: 323 MDVPLEVTVELGRTSKSIKEILDFTPGTIIELNRIAGEPIDVLVNGKFVAKGEVVVIEES 382 Query: 296 YTIRITDRI 304 Y IRIT+ I Sbjct: 383 YGIRITEII 391 >gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica] Length = 303 Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica] Length = 303 Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305] gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei DM98] gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei] gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein [Burkholderia pseudomallei 668] gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305] gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia pseudomallei 1655] Length = 115 Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ V + + +L +++ + G V+ ++ NG + E+ G+NY Sbjct: 41 KIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVVSGENY 100 Query: 297 TIRITD 302 ++I D Sbjct: 101 GLKIID 106 >gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense Az-Fu1] Length = 192 Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 L + I I K T++++V L V+ L NG + EL +V Sbjct: 107 LLDLPITITVEIGSKVMTIEEIVKLSPSSVVDLDRFITEPIDLKVNGVLVAKGELYQVED 166 Query: 295 NYTIRITDRINFDQK 309 + I+I + + +++ Sbjct: 167 QFAIKIKEILTKEER 181 >gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica] Length = 303 Score = 36.6 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ ++ K TL D+ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC 35937] Length = 112 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 33 ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ + Sbjct: 93 RFGIRLTDVVSPSERIRR 110 >gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12] Length = 106 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V++ I K T+++++ L G ++P + NG + E+ V Sbjct: 27 ILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLDVLVNGTLVAHGEVVVVND 86 Query: 295 NYTIRITDRINFDQKSLK 312 + +R+TD ++ ++ + Sbjct: 87 KFGVRLTDIVSKAERIKR 104 >gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces limnophilus DSM 3776] Length = 396 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 11/102 (10%), Positives = 37/102 (36%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + ++ Q ++ + V + R+ K+ L ++ L G ++ F Sbjct: 288 DPMESAAPLAQETMPQQSVTSQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTF 347 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++ E ++G+++ +++ +K Sbjct: 348 SKPCEDLLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPEK 389 >gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6] Length = 153 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K+++ L G V+ + NG I E+ V Sbjct: 71 ILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 130 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 131 KFGIRLTDIVTPSERMRR 148 >gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica] Length = 303 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ ++ K TL D+ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|114048080|ref|YP_738630.1| pyridoxal-dependent decarboxylase [Shewanella sp. MR-7] gi|113889522|gb|ABI43573.1| Pyridoxal-dependent decarboxylase [Shewanella sp. MR-7] Length = 549 Score = 36.6 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPSQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 112 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 33 ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ + Sbjct: 93 RFGIRLTDVVSPSERIRR 110 >gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1] gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3] gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1] Length = 119 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 24/70 (34%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. salamae serovar Sofia] Length = 303 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica] gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica] Length = 303 Score = 36.6 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 112 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 33 ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ + Sbjct: 93 RFGIRLTDVVSPSERIRR 110 >gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272] gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273] Length = 119 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 +++ + ++ TL DV LK+G V+ + + ++ E + Sbjct: 29 DTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDVYLSDIKVGIGEATVM 88 Query: 293 GKNYTIRITDRINFDQK 309 + + I I++ I D+K Sbjct: 89 DEKFGIIISE-IEADKK 104 >gi|113970855|ref|YP_734648.1| pyridoxal-dependent decarboxylase [Shewanella sp. MR-4] gi|113885539|gb|ABI39591.1| Pyridoxal-dependent decarboxylase [Shewanella sp. MR-4] Length = 549 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPSQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3] gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3] Length = 122 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ + Y +R Sbjct: 49 VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108 Query: 300 ITDRINF 306 + + + Sbjct: 109 LINVHDS 115 >gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14] gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas maltophilia K279a] gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14] Length = 111 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266 L+ T SS E DL + V + + + +++++ L G V+ Sbjct: 7 LEPTPAQFSSLQADEANGPDLNLDV---ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVE 63 Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ + + +R+TD ++ ++ + Sbjct: 64 LERGAGESLDVFVNGTLIAHGEVVVINDRFGVRLTDVVSPSERIRR 109 >gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS 2060] Length = 116 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 38/107 (35%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 +PQ + L + + + + + + V + + + + D++ L Sbjct: 9 LPQLSEADLALDQNGADSLRDGPPSPKSAADLEQVFDVPVVVSAVLGASRMPIGDLLRLG 68 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307 G V+ + + N + + E+ V + + +T+ + D Sbjct: 69 PGTVLELDRKVGEAIDIYVNNRLVARGEVVLVEERLGVTMTEIVKSD 115 >gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio harveyi ATCC BAA-1116] gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116] Length = 122 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + K+ L D++ G VI + NG + E+ + Y +R Sbjct: 49 VTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDKYGLR 108 Query: 300 ITDRINF 306 + + + Sbjct: 109 LINVHDS 115 >gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297] gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297] Length = 165 Score = 36.6 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG+ I E+ V + Sbjct: 86 ILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE 145 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ + Sbjct: 146 KFGIRLTDVVSQQERVQR 163 >gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29] Length = 119 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae EF01-2] Length = 163 Score = 36.6 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 81 RVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVN 140 Query: 294 KNYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 141 DKFGIRLTDVVTPSERLRR 159 >gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 409 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 23/67 (34%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 L V + + + T+ D+ L G L+ G+ + + L +G Sbjct: 331 DVNALGVTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLG 390 Query: 294 KNYTIRI 300 +++ Sbjct: 391 GTLGVQV 397 >gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46] Length = 116 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 30/75 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + V + + + + D++ L G V+ + + N + + E+ V Sbjct: 41 EQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVARGEVVLV 100 Query: 293 GKNYTIRITDRINFD 307 + + +T+ + D Sbjct: 101 EERLGVTMTEIVKSD 115 >gi|254255041|ref|ZP_04948358.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] gi|124899686|gb|EAY71529.1| Flagellar motor switch protein [Burkholderia dolosa AUO158] Length = 292 Score = 36.6 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ V ++ I ++ L DV+ L G ++P + + +G +++ + G Sbjct: 226 RIPVALNATIVTRELLLGDVLDLNRGSILPIRLPDAADVDV--DGLKVFRAAVVEHGGKI 283 Query: 297 TI 298 + Sbjct: 284 CL 285 >gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 223 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 149 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTL 208 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 209 GVEIHEWLSES 219 >gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147] Length = 104 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 + +++ + +TTL ++ ++ G V+ + A+G I E +G Sbjct: 34 DIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVMIGYGEFVEIGSRV 93 Query: 297 TI 298 + Sbjct: 94 AV 95 >gi|24373336|ref|NP_717379.1| glutamate decarboxylase, putative [Shewanella oneidensis MR-1] gi|24347590|gb|AAN54823.1|AE015621_1 glutamate decarboxylase, putative [Shewanella oneidensis MR-1] Length = 533 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ + +LS +E+KL++ + + E + ++I + + + Sbjct: 5 TVPEDADSTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDF-QTFEIPNQPRFVSDYT 63 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 64 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 123 Query: 235 TY 236 Sbjct: 124 VL 125 >gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus G9241] Length = 119 Score = 36.6 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271] Length = 119 Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|117921127|ref|YP_870319.1| pyridoxal-dependent decarboxylase [Shewanella sp. ANA-3] gi|117613459|gb|ABK48913.1| Pyridoxal-dependent decarboxylase [Shewanella sp. ANA-3] Length = 549 Score = 36.6 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + ++I + + + Sbjct: 21 TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FEIPSQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|172051242|gb|ACB70396.1| 60S ribosomal protein L2/L8 [Ornithodoros coriaceus] Length = 235 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%) Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 L++G V+P + I + K L R NY I + + +K Sbjct: 71 AQLQVGNVLPLSAMPEGTVICNVEEKPGDRGSLARTSGNYATVIAHNPDPRKTRVK 126 >gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter hydrocarbonoclasticus] Length = 166 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 86 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ + Sbjct: 146 KFGIRLTDVISPGERIKR 163 >gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0465] Length = 119 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 24/70 (34%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|5061|emb|CAA28710.1| unnamed protein product [Schizosaccharomyces pombe] Length = 239 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 8/108 (7%) Query: 213 SLSSQNKSENQSEDLIDPFARKTY--QLNVNIDTRINLKKTTL------KDVVTLKIGQV 264 +SS+ + L P + + + L+ TL L +G V Sbjct: 41 VVSSKRSFMTLAVVLRWPRLLSVILITTELMLKPLLQLRVCTLANSFYCGKNAALTVGNV 100 Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 +P + I + K LGR NY I + ++ + +K Sbjct: 101 LPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVK 148 >gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8] gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8] Length = 166 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 86 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ + Sbjct: 146 KFGIRLTDVISPGERIKR 163 >gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames] gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne] gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein [Bacillus anthracis str. A2012] gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066] gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055] gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western North America USA6153] gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B] gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum] gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia 94] gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. Ames] gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. 'Ames Ancestor'] gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis str. Sterne] gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0488] gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0193] gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0442] gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0389] gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0174] gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis Tsiankovskii-I] gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. CDC 684] gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis str. A0248] Length = 119 Score = 36.6 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 24/70 (34%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium HP15] Length = 163 Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + + +++++ L G VI + NG I E+ V + Sbjct: 83 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 142 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I+ ++ + Sbjct: 143 KFGIRLTDVISPGERIKR 160 >gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum ferrodiazotrophum] Length = 125 Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + + I R+ + +KD++ L G V+ + N + + ++ V Sbjct: 47 LLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND 106 Query: 295 NYTIRITDRINF 306 Y IR+TD ++ Sbjct: 107 KYGIRLTDIVSP 118 >gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a] gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805] gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1] Length = 113 Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia AU 1054] gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia HI2424] gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia AU 1054] gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia HI2424] gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] Length = 384 Score = 36.6 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + + + R L V++ + L ++ L+ G VI Sbjct: 278 IREMPLEPTRTDSAPPTTHDAPPADVPRSLDGLAVDLRFELPPTSMPLGELSALQPGAVI 337 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + L VG+ +R+ Sbjct: 338 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 373 >gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM 2876] Length = 426 Score = 36.2 bits (82), Expect = 5.9, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +TT +K+++ G ++ + NGK + E+ + ++ Sbjct: 357 MDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVIEES 416 Query: 296 YTIRITDRI 304 + ++IT+ + Sbjct: 417 FGVKITEIV 425 >gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4] Length = 112 Score = 36.2 bits (82), Expect = 5.9, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 4/108 (3%) Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260 IP + L S Q ++ + + V I + K + D++ L Sbjct: 9 IPLDELEVPAAPSEEDGATGATQGAGDLEA----VFDVPVRISAVLGSSKMHVSDLLKLA 64 Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 G V+ + + N + + E+ V + +T+ I D+ Sbjct: 65 SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112 >gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM 16841] Length = 379 Score = 36.2 bits (82), Expect = 6.0, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 238 LNVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++V ++ + L +TT + +++ G +I + NGK + E+ + ++ Sbjct: 310 MDVPLEVTVELGRTTKSIHEILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEES 369 Query: 296 YTIRITDRI 304 + +RIT+ + Sbjct: 370 FGVRITEIV 378 >gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53] gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisA53] Length = 82 Score = 36.2 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 24/73 (32%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +++V++ + + V+ L G +I E + AN + S + Sbjct: 8 KVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLVDRNRI 67 Query: 297 TIRITDRINFDQK 309 + + + Sbjct: 68 AVEVKRMLPRSPD 80 >gi|294636651|ref|ZP_06715003.1| amine oxidase, flavin-containing [Edwardsiella tarda ATCC 23685] gi|291090115|gb|EFE22676.1| amine oxidase, flavin-containing [Edwardsiella tarda ATCC 23685] Length = 454 Score = 36.2 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 1/76 (1%) Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182 R LS E+++ +R + + L + S Q+ S L DI + RL+ ++ Sbjct: 123 DGRPLSAKEERVLERLKSVLFETLQEGQSAPQDKS-ILATVADIVQDASPSERLNIWYLL 181 Query: 183 TINMNMTIENVASSFV 198 N+ + Sbjct: 182 NSNLEQELSGALGEMS 197 >gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum lavamentivorans DS-1] Length = 78 Score = 36.2 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V + + + ++ + G VI R+ + AN I E+ G+ + Sbjct: 9 VELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIVQGERVAVS 68 Query: 300 IT 301 IT Sbjct: 69 IT 70 >gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18] gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB18] Length = 80 Score = 36.2 bits (82), Expect = 6.2, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 24/73 (32%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +++V++ + + V+ L G +I E + AN I S + Sbjct: 6 KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRNRI 65 Query: 297 TIRITDRINFDQK 309 + + + Sbjct: 66 AVEVKRMLPRSPD 78 >gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas subvibrioides ATCC 15264] Length = 83 Score = 36.2 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + ++V + + + ++ + G VIP E + AN + + Sbjct: 3 QIEAVDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEIRE 62 Query: 294 KNYTIRITDRIN 305 I +T + Sbjct: 63 DRIAITVTRPAD 74 >gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 338 Score = 36.2 bits (82), Expect = 6.3, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 198 VLIIPQETLLK-----TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252 L +P LL + ++ ++ QSE L +R+ L ++++ R T Sbjct: 219 ELQLPHHFLLNHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMT 278 Query: 253 LKDVVTLKIGQVIPFL 268 L ++ L+ G V+ Sbjct: 279 LGELQQLQAGSVVTLD 294 >gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea MMB-1] Length = 150 Score = 36.2 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VN+ + +++++ L G V+ + NG I E+ V Sbjct: 71 IMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVVND 130 Query: 295 NYTIRITDRINFDQKSLK 312 Y IR+TD ++ ++ + Sbjct: 131 KYGIRLTDVVSPSERIKR 148 >gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC 19865] Length = 112 Score = 36.2 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 33 ILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVVIND 92 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD ++ ++ + Sbjct: 93 RFGIRLTDVVSPSERIRR 110 >gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus c2] Length = 139 Score = 36.2 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Query: 212 ISLSSQNKSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270 + Q +S +S +P + + V + I ++ ++ L G ++ Sbjct: 36 VPPLDQFESAGKSNGTENPINLEVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRL 95 Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG I E+ + + + IR+TD I+ ++ K Sbjct: 96 AGEPLDVLVNGTLIARGEVVVINEKFGIRLTDVISPAERLRK 137 >gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4] gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis KBAB4] gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621] gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048] Length = 119 Score = 36.2 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++ E + + + I I++ I D+K Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISE-IEADKK 104 >gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04] gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi] gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr] gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04] Length = 113 Score = 36.2 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S] gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116] gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S] Length = 113 Score = 36.2 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia R551-3] Length = 111 Score = 36.2 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +++++ L G V+ + NG I E+ + Sbjct: 32 ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91 Query: 295 NYTIRITDRINFDQKSLK 312 + +R+TD ++ ++ + Sbjct: 92 RFGVRLTDVVSPSERIRR 109 >gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp. MED105] Length = 149 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G VI + NG I E+ V Sbjct: 69 ILDIPVQLTVELGRTKIPIKHILQLAQGSVIELDGLAGEPMDVLVNGYLIAQGEVVVVND 128 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 129 KFGIRLTDIITPSERLRK 146 >gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo] gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1] Length = 113 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia] gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 366 Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + + + R L V++ + L ++ L+ G VI Sbjct: 260 IREMPLEPTRTDSAPPTTHDAPPGDAPRSLDGLAVDLRFELPPTSMPLGELSALQPGAVI 319 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + L VG+ +R+ Sbjct: 320 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 355 >gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides ATCC 15264] Length = 109 Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 28/75 (37%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + + VNI + T+ ++ L G V+ + + N + + E+ V Sbjct: 32 TVFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVARGEVVVVE 91 Query: 294 KNYTIRITDRINFDQ 308 + +T+ I + Sbjct: 92 DRLGVTMTEIIKTED 106 >gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis HTCC2503] gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis HTCC2503] Length = 90 Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279 S++ P Y + + + + K +LK++ V+P L R L Sbjct: 2 SDSAKAQNKQPL----YDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVV 57 Query: 280 NGKEIYSCEL--GRVG-KNYTIRITDRINFDQK 309 +G+ I + EL G G ++ +RI D + + Sbjct: 58 DGQVIATGELCEGDTGPESLALRILDLKEENAE 90 >gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum SL003B-26A1] gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum SL003B-26A1] Length = 112 Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255 IP + L S + QS ++ + + V I + + + D Sbjct: 4 EIENSIPLDELESPGRRSDDGEEGVHVQSAADLEA----VFDVPVRISAVLGHSRMHVSD 59 Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 ++ L G V+ + + N + + E+ V + +T+ I D+ Sbjct: 60 LLKLAAGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112 >gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +N+ + + +KDV L G V+ + ANG+ + +L + Sbjct: 103 LMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMDD 162 Query: 295 NYTIRITDRINFDQKS 310 Y I+IT+ ++ ++ Sbjct: 163 FYGIQITEIVDQSRRL 178 >gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684] Length = 130 Score = 36.2 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + + V + I + T+ + + L+ G ++ L NG I E+ + Sbjct: 28 RLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVID 87 Query: 294 KNYTIRITDRINFD 307 + + +RITD + Sbjct: 88 EEFGLRITDVLGAP 101 >gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814] gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica ATCC 49814] Length = 80 Score = 36.2 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297 + + I + K ++ ++ + G VIP E + AN I EL G+ + Sbjct: 4 VEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGERVS 63 Query: 298 IRITDRINFDQ 308 + +T + Sbjct: 64 VSVTGAAQVED 74 >gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi] gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi] gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31] gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a] gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7] gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a] gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b] gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23] gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a] gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a] gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a] gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1] gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26] gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40] Length = 113 Score = 36.2 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +++ + + + +KD++ + G +I + NGK + E+ + + Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98 Query: 295 NYTIRITDRINFDQK 309 N+ +RIT+ I + Sbjct: 99 NFGVRITEIIKTKNE 113 >gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256] Length = 111 Score = 36.2 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 31/94 (32%) Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272 + + P +++ + + TL +++ L G VI Sbjct: 7 APKAARADRRDKSIAAAPNFDLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAAT 66 Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306 + ANG I E+ V Y I++ + + Sbjct: 67 DLLDIYANGTLIAKGEIVSVDGRYGIQVAEVVAP 100 >gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus xanthus DK 1622] Length = 416 Score = 36.2 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 23/61 (37%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V+++ + L ++ LK G ++P +L + + EL + R Sbjct: 351 VDVEIELTRVMIPLSELAALKPGALLPLHINASEPVVLRVGDRAVARAELVEIEGEVGAR 410 Query: 300 I 300 + Sbjct: 411 V 411 >gi|320107031|ref|YP_004182621.1| surface presentation of antigens (SpoA) protein [Terriglobus saanensis SP1PR4] gi|319925552|gb|ADV82627.1| surface presentation of antigens (SpoA) protein [Terriglobus saanensis SP1PR4] Length = 79 Score = 36.2 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 P L V + + L + ++D++ L+ G V+ E L ++ CE Sbjct: 5 PSWPVLSTLQVRMKVALPLPRFCVRDLLALQPGSVVGSGWNETEDVPLIGGETQVSWCEF 64 Query: 290 GRVGKNYTIRITDRI 304 V +R+T I Sbjct: 65 ETVEDRIAVRLTRLI 79 >gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5] gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas palustris BisB5] Length = 80 Score = 36.2 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 24/73 (32%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +++V++ + + V+ L G +I E + AN I S + Sbjct: 6 KVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLVDRNRI 65 Query: 297 TIRITDRINFDQK 309 + + + Sbjct: 66 AVEVKQMLTRSPD 78 >gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium sp. TrichSKD4] gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium sp. TrichSKD4] Length = 348 Score = 36.2 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284 E++ + A K ++ VN+ + + ++ L+ G V+ + L NG++I Sbjct: 265 ENMGEGAAGKVDEIKVNLVVSAGELQLPIGELRELETGSVLRLPVGQPGNVNLMVNGQKI 324 Query: 285 YSCELGRVGKNYTIRITD 302 L + + I+ Sbjct: 325 GEGVLVTISGQTAVEISK 342 >gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571] gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571] Length = 120 Score = 36.2 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289 ++ V + + + +++ L G ++P HR + NG+ I E+ Sbjct: 38 ESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEV 94 >gi|91793786|ref|YP_563437.1| pyridoxal-dependent decarboxylase [Shewanella denitrificans OS217] gi|91715788|gb|ABE55714.1| Pyridoxal-dependent decarboxylase [Shewanella denitrificans OS217] Length = 554 Score = 36.2 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + + I + + + Sbjct: 26 TVPEDAESTLSIIEQKLSEDLAGFLGNSIAALEKPLSEIETDFQA-FQIPTAPRFVSDYT 84 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + +P L + ++ +QN + ++ P R+ Sbjct: 85 DEIMQNLVAHSVHTAAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 144 Query: 235 TY 236 Sbjct: 145 VL 146 >gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria IOP40-10] gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria IOP40-10] Length = 193 Score = 36.2 bits (82), Expect = 7.2, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + S + D R L V++ + L ++ L+ G VI Sbjct: 87 IREMPLEPTRTDTPSATTHDASADDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVI 146 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + +L VG+ +R+ Sbjct: 147 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 182 >gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342] Length = 119 Score = 36.2 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579] gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264] gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579] gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus AH1134] gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus B4264] gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus G9842] gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876] gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W] gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550] gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24] gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4] gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2] gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185] gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676] gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407] gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar sotto str. T04001] gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL 200] gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171] gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 119 Score = 36.2 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 24/70 (34%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|332799974|ref|YP_004461473.1| heavy metal translocating P-type ATPase [Tepidanaerobacter sp. Re1] gi|332697709|gb|AEE92166.1| heavy metal translocating P-type ATPase [Tepidanaerobacter sp. Re1] Length = 868 Score = 36.2 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 67/184 (36%), Gaps = 22/184 (11%) Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163 ++ ++ + + + LS +E ++ AQ VL + + + + Sbjct: 104 ILFMIPLMYISMGHMLNLPLPSFLSGIENAVS-FAFAQFLLVLPIAFANRKFYTIGFKTL 162 Query: 164 Y----DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ--------ETLLKTTL 211 + ++D L + + + M+ A F L+ ++ T + Sbjct: 163 FKGHPNMDSLIAIGSGSALIYGVFAIFRMSYGLGAGDFELVHRYYHDLYFESAAMILTLI 222 Query: 212 ISLS-----SQNKSENQSEDLID--PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264 ++ K+ + + L+D P A + + ++ I ++ ++D++ ++ G Sbjct: 223 TVGKFLETRAKGKTTDAIKKLMDLAPKAARVERD--GLEEEIPVESVKVEDIIVIRPGDS 280 Query: 265 IPFL 268 IP Sbjct: 281 IPVD 284 >gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia ambifaria MEX-5] Length = 193 Score = 36.2 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + S + D R L V++ + L ++ L+ G VI Sbjct: 87 IREMPLEPTRTDTPSATTHDASADDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVI 146 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + +L VG+ +R+ Sbjct: 147 ELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRV 182 >gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1] Length = 107 Score = 36.2 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 238 LNVNIDTRINLKKTTLK--DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 ++ + + + T+L+ +++ L G V+ + + NG + E+ V Sbjct: 26 ADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEVVTVNGK 85 Query: 296 YTIRITDRINFD 307 + IR+ D + D Sbjct: 86 FGIRVVDIVAAD 97 >gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120] gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120] Length = 514 Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 27/259 (10%), Positives = 81/259 (31%), Gaps = 36/259 (13%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGIVQ---EDAELTELEVSAVQ 317 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N + + + ++ Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVDG 376 Query: 193 V-------------ASSFVLII-------------PQETLLKTTLISLSSQNKSENQSED 226 + A ++ P +++ + + ++ Sbjct: 377 LLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEKATPPAEIIEPEKPA-EPVQPIVVEEKE 435 Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286 + + + V ++ K L+ ++ VI +L+ NG I Sbjct: 436 TLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGK 495 Query: 287 CELGRVGKNYTIRITDRIN 305 L RV ++ I++T+ + Sbjct: 496 GILVRVDDHFGIQMTELVR 514 >gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai str. 56601] Length = 178 Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 +N+ + + +KDV L G V+ + ANG+ + +L + Sbjct: 103 LMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAMDD 162 Query: 295 NYTIRITDRINFDQKS 310 Y I+IT+ ++ ++ Sbjct: 163 FYGIQITEIVDQSRRL 178 >gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 303 Score = 36.2 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 QL V ++ + K TL ++ + Q++ + + ANG + + EL ++ Sbjct: 229 QLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLVGNGELVQMNDTL 288 Query: 297 TIRITDRINFD 307 + I + ++ Sbjct: 289 GVEIHEWLSES 299 >gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 85 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 + ++ + TL + + G V+PF + L NG+ I EL +G +R Sbjct: 20 TLICQLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDGLGVR 78 >gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1] Length = 174 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%) Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273 L + + ++ D + V + I + +++ ++ L G V+ Sbjct: 74 LDEFDPAATRAGGEDDQNIDVILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGE 133 Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NG I E+ V + + IR+TD I+ ++ Sbjct: 134 PLDVMVNGTLIAHGEVVVVNERFGIRLTDVISPAER 169 >gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 211 LISLSSQNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268 L +L D A + V + I + +++ ++ L G V+ Sbjct: 121 RAELDELEPDAGAGRNLGDEEANLDVIMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELD 180 Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + NG I E+ V + + IR+TD I+ ++ Sbjct: 181 RLAGEPLDVMVNGTLIAHGEVVVVNERFGIRLTDVISAAER 221 >gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2] Length = 151 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 72 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 131 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 132 KFGIRLTDVISPSERI 147 >gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b str. F2365] gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes serotype 4b str. F2365] gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str. 4b H7858] gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503] gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL N1-017] Length = 504 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 37/260 (14%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 250 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 306 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDY------------------------ 168 + Q+ + +++ + T + SP +F + Sbjct: 307 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGL 366 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFV---LIIPQETLLKTTLISLSSQNKSENQSE 225 LK ++ N + + A P E + L +++ + + Sbjct: 367 LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKLAEP--VHQAVIEEK 424 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + + + + V ++ K L+ ++ VI +L+ NG I Sbjct: 425 ETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIG 484 Query: 286 SCELGRVGKNYTIRITDRIN 305 L RV ++ I++T+ + Sbjct: 485 KGILVRVDDHFGIQMTELVR 504 >gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262] gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194] Length = 504 Score = 35.8 bits (81), Expect = 7.7, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 250 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 306 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N + + + +E Sbjct: 307 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVEG 365 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234 + L P + +Q Q++++ + A Sbjct: 366 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAV 420 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + V ++ K L+ ++ VI +L+ NG Sbjct: 421 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 480 Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305 I L RV ++ I++T+ + Sbjct: 481 VTIGKGILVRVDDHFGIQMTELVR 504 >gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus AHT2] Length = 134 Score = 35.8 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 238 LNVNIDTRINLK--KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295 L+V ++ + L + ++ L G VI + N K + E+ V + Sbjct: 56 LDVPLEVSVELGRTSMIINKMLQLTQGSVIELDKAAGEPVEIFVNQKLMGKGEVVVVNER 115 Query: 296 YTIRITDRINFDQKS 310 + IR+T+ I+ + Sbjct: 116 FGIRVTEIISQADRI 130 >gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia multivorans ATCC 17616] gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia multivorans ATCC 17616] Length = 443 Score = 35.8 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTI 298 V++ + L ++ L+ G VI I L ANG I + L VG+ + Sbjct: 371 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 430 Query: 299 RI 300 R+ Sbjct: 431 RV 432 >gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987] gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187] gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1] gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC 10987] gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus NVH0597-99] gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus H3081.97] gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus AH187] gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1] gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293] gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26] Length = 119 Score = 35.8 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT 1] Length = 141 Score = 35.8 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292 + + + + + + + DVV+L G ++ F ++ NGK I E+ V Sbjct: 60 ERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVV 119 Query: 293 GKNYTIRITDRINFDQKSLKNF 314 G+++ +RI+ I Q+ Sbjct: 120 GEHFGVRISQIITPQQRIENML 141 >gi|294141792|ref|YP_003557770.1| glutamate decarboxylase [Shewanella violacea DSS12] gi|293328261|dbj|BAJ02992.1| glutamate decarboxylase, putative [Shewanella violacea DSS12] Length = 550 Score = 35.8 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ + +LS +EK +++ + + + E + + + I + + + Sbjct: 20 TVPEAPDSTLSVIEKNISQNLMGFLQESVVAVEKPLSEIELDFQQ-HQIPSAPQFVSDYA 78 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 79 DEMMKTLVAHSVHTSSPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 138 Query: 235 TY 236 Sbjct: 139 VL 140 >gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC 13177] Length = 115 Score = 35.8 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 29/66 (43%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 ++ V + + +L +++ + G V+ ++ NG + E+ G+NY Sbjct: 41 KIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVVSGENY 100 Query: 297 TIRITD 302 ++I D Sbjct: 101 GLKIID 106 >gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica] gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica] Length = 303 Score = 35.8 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + K TL ++ + Q++ + + ANG + + EL ++ + Sbjct: 232 VKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMANGVLLGNGELVQMNDTLGVE 291 Query: 300 ITDRINFD 307 I + ++ Sbjct: 292 IHEWLSES 299 >gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica] gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica] Length = 303 Score = 35.8 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 29/68 (42%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299 V ++ + K TL ++ + Q++ + + ANG + + EL ++ + Sbjct: 232 VKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVEIMANGVLLGNGELVQMNDTLGVE 291 Query: 300 ITDRINFD 307 I + ++ Sbjct: 292 IHEWLSES 299 >gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601] Length = 518 Score = 35.8 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 29/251 (11%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S + + +LG + E + L+ +E + Sbjct: 268 ERPCIVTTVEFVEGLKSSNTFIISKQAALVMANLMLGGTGE---VDEDAELTELELSAMQ 324 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDF---------YDIDYLKKNTNRLSNEFVTT 183 + Q+ + +++ + + SP + + DID K E + Sbjct: 325 EVMNQMMGYSATAMSEMLGKKIDISPPIVEVCNVGDAMIQKDIDGGKTVEVIFPLEVESL 384 Query: 184 IN------MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTY 236 I N + + +L + +E +T + + +E Q E + Sbjct: 385 IKTPMYQIFNPELAKEIAHMMLSVQEEVQAETPVEEVVETPPAEPIQVEKATPQISTTET 444 Query: 237 QL-----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291 + + ++ K L D +T ++ + L ANG I S L R Sbjct: 445 EAVIDSIPITLEVIFGTAKVKLADFITWCEKDIVILKESYEQPLSLLANGIHIGSGTLVR 504 Query: 292 VGKNYTIRITD 302 V ++ I+IT+ Sbjct: 505 VNDHFGIKITE 515 >gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1] gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58] gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1] gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1] gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa UCBPP-PA14] gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719] gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192] gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58] gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016] Length = 157 Score = 35.8 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 138 KFGIRLTDVISPSERI 153 >gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus cytotoxicus NVH 391-98] Length = 119 Score = 35.8 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL S + Q E+ +++ + ++ L DV LK+G V+ Sbjct: 4 EVSPVSLMSLEEYAIQREEQAKAHIDTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|146292569|ref|YP_001182993.1| pyridoxal-dependent decarboxylase [Shewanella putrefaciens CN-32] gi|145564259|gb|ABP75194.1| Pyridoxal-dependent decarboxylase [Shewanella putrefaciens CN-32] Length = 549 Score = 35.8 bits (81), Expect = 8.0, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + + I + + + Sbjct: 21 TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FKIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa] Length = 157 Score = 35.8 bits (81), Expect = 8.1, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 138 KFGIRLTDVISPSERI 153 >gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein [Achromobacter xylosoxidans C54] Length = 396 Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKN 295 Q+ V + + + TL + TL +G+V C + ANG E+ EL V N Sbjct: 324 QVPVRLGFDLGERLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVEGN 383 Query: 296 YTIRIT 301 +R+ Sbjct: 384 IGVRLK 389 >gi|120599435|ref|YP_964009.1| pyridoxal-dependent decarboxylase [Shewanella sp. W3-18-1] gi|120559528|gb|ABM25455.1| Pyridoxal-dependent decarboxylase [Shewanella sp. W3-18-1] Length = 549 Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + + I + + + Sbjct: 21 TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FKIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes Clip81459] gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175] gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816] Length = 515 Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 37/260 (14%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 317 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDY------------------------ 168 + Q+ + +++ + T + SP +F + Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGL 377 Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFV---LIIPQETLLKTTLISLSSQNKSENQSE 225 LK ++ N + + A P E + L +++ + + Sbjct: 378 LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKLAEP--VHQAVIEEK 435 Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285 + + + + V ++ K L+ ++ VI +L+ NG I Sbjct: 436 ETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIG 495 Query: 286 SCELGRVGKNYTIRITDRIN 305 L RV ++ I++T+ + Sbjct: 496 KGILVRVDDHFGIQMTELVR 515 >gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY] gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42] gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY] Length = 149 Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 68 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 127 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 128 KFGIRLTDVVTPSERLRR 145 >gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23] gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99] gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220] gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott A] Length = 515 Score = 35.8 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDG---LVQEDAELTELEVSAVQ 317 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N + + + +E Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVEG 376 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234 + L P + +Q Q++++ + A Sbjct: 377 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPVHQAV 431 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + V ++ K L+ ++ VI +L+ NG Sbjct: 432 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 491 Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305 I L RV ++ I++T+ + Sbjct: 492 VTIGKGILVRVDDHFGIQMTELVR 515 >gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str. Paris] gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str. Paris] Length = 111 Score = 35.8 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 40/96 (41%) Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276 QN+ + D + + V++ I K T+++++ L G ++ Sbjct: 14 QNQGNPLNPDSGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 73 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG + E+ V + +R+TD ++ ++ + Sbjct: 74 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKR 109 >gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7] gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7] Length = 157 Score = 35.8 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V I + ++++++ L G VI + NG I E+ V + Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 138 KFGIRLTDVISPSERI 153 >gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118] gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118] Length = 139 Score = 35.8 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293 + + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 56 RVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVN 115 Query: 294 KNYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 116 DKFGIRLTDVVTPSERLRR 134 >gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804] gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii] Length = 181 Score = 35.8 bits (81), Expect = 8.6, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V + Sbjct: 99 IMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVEE 158 Query: 295 NYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + L+ R Sbjct: 159 KYGIRLTDIITPSERINR--LNNR 180 >gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica] gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica] gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 303 Score = 35.8 bits (81), Expect = 8.6, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 QL V ++ + K+ TL D+ + Q++ + + ANG + + EL ++ Sbjct: 227 LSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVEIMANGVLLGNGELVQMND 286 Query: 295 NYTIRI 300 + I Sbjct: 287 TLGVEI 292 >gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 119 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++ + ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 + + ++ E + + + I I++ I D+K Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISE-IEADKK 104 >gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8] Length = 179 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 97 IMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVED 156 Query: 295 NYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + L+ R Sbjct: 157 KYGIRLTDIITPSERINR--LNNR 178 >gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803] Length = 119 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 26/70 (37%) Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267 + + +SL + + + +++++ ++ TL DV LK+G V+ Sbjct: 4 EVSPVSLMGLEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEV 63 Query: 268 LHREKTCAIL 277 + Sbjct: 64 EKNLGHKVDV 73 >gi|298675134|ref|YP_003726884.1| restriction endonuclease [Methanohalobium evestigatum Z-7303] gi|298288122|gb|ADI74088.1| restriction endonuclease [Methanohalobium evestigatum Z-7303] Length = 366 Score = 35.8 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 7/92 (7%) Query: 223 QSEDLIDPFARKTYQLN-VNIDTRINL-----KKTTLKDVVTLKIGQVIPFLHREKTCAI 276 + ED D + +I T LKD++ L V Sbjct: 187 KDEDFEDRLQEYLKNTEDLEFKCQIAEIIHEIGNTPLKDLLQLMNSDV-EDEELPDNPDK 245 Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308 L+ E+ C++ R Y IR + + DQ Sbjct: 246 LTPKQLELAVCKIYREKGYYAIRTKNTNDKDQ 277 >gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia cenocepacia MC0-3] Length = 364 Score = 35.8 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 5/111 (4%) Query: 197 FVLIIPQETLLKTTLI---SLSSQNKSENQSEDLIDPF-ARKTYQLNVNIDTRINLKKTT 252 + TL L+ + +++++ D +L + + I Sbjct: 246 MHQYVAHATLDGPRLVLDTEPAMTDRNDHPVPGAPDAETQTSLDELELPVSFEIETVTLP 305 Query: 253 LKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302 L + L+ G VI L A G+ I EL VG+ +R+ D Sbjct: 306 LAQLSALRPGYVIELRGTLRDARIRLLAYGQLIGIGELVTVGEQLGVRVID 356 >gi|319425869|gb|ADV53943.1| Pyridoxal-dependent decarboxylase [Shewanella putrefaciens 200] Length = 549 Score = 35.8 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ +LS +E+KL++ + + E + + + I + + + Sbjct: 21 TVPEDAESTLSIIEQKLSEDLAGFLGDSIAALEKPLSEIETDFQA-FKIPTQPRFVSDYT 79 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 +E + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 80 DEIMQNLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 139 Query: 235 TY 236 Sbjct: 140 VL 141 >gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1] gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1] Length = 154 Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + VNI + + +++++ L G VI + NG I E+ V + Sbjct: 75 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 134 Query: 295 NYTIRITDRINFDQKS 310 + IR+TD I+ ++ Sbjct: 135 KFGIRLTDVISPSERI 150 >gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp. avenae ATCC 19860] Length = 148 Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 67 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 127 KFGIRLTDVVTPSERLRR 144 >gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium HTCC2207] Length = 108 Score = 35.8 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 35/104 (33%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L+ S + + A + V I + ++D++ L G V+ Sbjct: 1 MAENNPDVLADDVLSTDLDDLKNKINADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVV 60 Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309 L N + E+ V + Y +R+T I + Sbjct: 61 ELDRIAGEPLDLLVNNTLVAQGEVVLVNERYGVRLTSVIPTADR 104 >gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia multivorans ATCC 17616] gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia multivorans ATCC 17616] Length = 385 Score = 35.8 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTI 298 V++ + L ++ L+ G VI I L ANG I + L VG+ + Sbjct: 313 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 372 Query: 299 RI 300 R+ Sbjct: 373 RV 374 >gi|308803651|ref|XP_003079138.1| Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase (ISS) [Ostreococcus tauri] gi|116057593|emb|CAL53796.1| Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase (ISS) [Ostreococcus tauri] Length = 386 Score = 35.8 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 24/180 (13%) Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173 A E R L+ + + ++ ++ + + ++ D + D +K Sbjct: 109 AQGEKALDELERVLTDFQVIVEQKDKQEVPLAQQEALQLVGRIEEDMIDGFPFDVPEKFA 168 Query: 174 NRLSNEFVTTINMNMTIEN----VASSFVLII-----PQETLLKTTLISLSSQNKSENQS 224 +R + T+ M + I+N +++ P LI+L + Q Sbjct: 169 DRPLLKGRATVEMQVKIKNNANTDGGVMTIVLDGYNAPVSAGNFADLINLGFYDNMPIQR 228 Query: 225 ED----------LIDPFARKTYQLNVNIDTRIN-----LKKTTLKDVVTLKIGQVIPFLH 269 D D F + + +V ++ + + TL+D+ + V+PF Sbjct: 229 SDGFVVQSGKPRDGDGFKQDGVERDVPLEIMVQGDKVPEYEFTLEDLGRYRAQPVLPFNA 288 >gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2M] gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2] gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2] gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family [Burkholderia multivorans CGD2M] Length = 385 Score = 35.8 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTI 298 V++ + L ++ L+ G VI I L ANG I + L VG+ + Sbjct: 313 VDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGV 372 Query: 299 RI 300 R+ Sbjct: 373 RV 374 >gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia vietnamiensis G4] gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia vietnamiensis G4] Length = 392 Score = 35.8 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 1/96 (1%) Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265 + + L + + D R L V++ + L ++ L+ G VI Sbjct: 286 IREMPLEPTRTDTPPATAHDAPPDDAPRSLDGLAVDLRFELPPTSIPLGELGALQPGAVI 345 Query: 266 PFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRI 300 I L ANG I + L VG+ +R+ Sbjct: 346 ELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRV 381 >gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1] gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2] gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44] Length = 144 Score = 35.8 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 63 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 123 KFGIRLTDVVTPSERLRR 140 >gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella chejuensis KCTC 2396] gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella chejuensis KCTC 2396] Length = 397 Score = 35.8 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%) Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 L V + + + TL + +L GQ I L + I EL +VG Sbjct: 302 DLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGDQI 361 Query: 297 TIRIT 301 RIT Sbjct: 362 GARIT 366 >gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium HTCC2080] Length = 112 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 32/76 (42%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + ++ T+K+++ L G V+ F L NG + E+ Sbjct: 32 LMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVVSAEG 91 Query: 295 NYTIRITDRINFDQKS 310 + +R+ D ++ ++ Sbjct: 92 QFGLRLVDVVSPKERL 107 >gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5] gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto BEST195] gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5] Length = 378 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P L++ + + L +T ++K+++ L G +I + N + + Sbjct: 292 PIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 351 Query: 288 ELGRVGKNYTIRITDRINFDQKS 310 E+ + +N+ +R+TD ++ ++ Sbjct: 352 EVVVIEENFGVRVTDILSQAERI 374 >gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1] Length = 148 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 67 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 127 KFGIRLTDVVTPSERLRR 144 >gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis str. SMY] gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName: Full=CheY-P phosphatase FliY; AltName: Full=Flagellar motor switch protein FliY gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis] gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus subtilis subsp. subtilis str. 168] Length = 378 Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 230 PFARKTYQLNVNIDTRINLKKT--TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287 P L++ + + L +T ++K+++ L G +I + N + + Sbjct: 292 PIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKG 351 Query: 288 ELGRVGKNYTIRITDRINFDQKS 310 E+ + +N+ +R+TD ++ ++ Sbjct: 352 EVVVIEENFGVRVTDILSQAERI 374 >gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str. Corby] Length = 109 Score = 35.8 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 40/101 (39%) Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271 S N+ + D + + V++ I K T+++++ L G ++ Sbjct: 7 TSAEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLA 66 Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312 + NG + E+ V + +R+TD ++ ++ + Sbjct: 67 GDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKR 107 >gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans C54] Length = 100 Score = 35.8 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + T+K+++ L G V+ + NG I E+ V Sbjct: 18 IMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVED 77 Query: 295 NYTIRITDRINFDQKSLKNFLHKR 318 Y IR+TD I ++ + L+ R Sbjct: 78 KYGIRLTDIITPSERINR--LNNR 99 >gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1] Length = 142 Score = 35.8 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K ++ L G V+ + NG I E+ V Sbjct: 60 ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 119 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 120 KFGIRLTDIVTPSERMRR 137 >gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 172 Score = 35.8 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 239 NVNIDTRINLKKTT--LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296 +V + I L +TT +KDV+ L G V+ + ANGK + +L + Y Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYY 152 Query: 297 TIRITDRINF 306 ++IT ++ Sbjct: 153 GVQITQIVDP 162 >gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91] Length = 157 Score = 35.8 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + + +K+++ L G VI + NG I E+ V + Sbjct: 77 ILDIPVQLTVELGRTRIAIKNLLQLAQGSVIELDGMAGEPMDVLVNGCLIAQGEVVVVNE 136 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD I ++ K Sbjct: 137 KFGIRLTDIITPSERIRK 154 >gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684] gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684] Length = 301 Score = 35.8 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 16/205 (7%) Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ----ESSPNLEDFYDIDYLKK 171 + P+ LS +E Q+ A I E +P ++ Sbjct: 85 GQPPPEDDASELSVLELSAVAEAANQMMAAAAAAIGVVLGQDVEIAPPETRLFNSASEAI 144 Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS------SQNKSENQSE 225 + ++ + E V ++P +++ T S S+ Sbjct: 145 DAYEMA-PHGARATFRVCDEPCR--LVQLVPNAFVVRMTRALDEMGVEHVSGGASDGGEG 201 Query: 226 DLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283 D+ + A + V + + + L + G V+ + L NG Sbjct: 202 DVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDMPAGSVLELDRKADDPVDLYVNGLR 261 Query: 284 IYSCELG-RVGKNYTIRITDRINFD 307 S L + +R+ + D Sbjct: 262 FASGTLVLTDDGEWALRLAEVAGRD 286 >gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165] Length = 515 Score = 35.8 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGIVQ---EDAELTELEVSAVQ 317 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N + + + ++ Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVDG 376 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234 + L P + +Q Q++++ + A Sbjct: 377 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTV 431 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + V ++ K L+ ++ VI +L+ NG Sbjct: 432 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 491 Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305 I L RV ++ I++T+ + Sbjct: 492 VTIGKGILVRVDDHFGIQMTELVR 515 >gi|170727475|ref|YP_001761501.1| pyridoxal-dependent decarboxylase [Shewanella woodyi ATCC 51908] gi|169812822|gb|ACA87406.1| Pyridoxal-dependent decarboxylase [Shewanella woodyi ATCC 51908] Length = 551 Score = 35.8 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177 T+P+ + +LS +E+ +++ + + + E + + + I + + + Sbjct: 20 TVPEAPDSTLSVIEQNISQNLMGFLQESVVAVEKPLSEIERDFQQ-HQIPSAPQFVSDYA 78 Query: 178 NEF---VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234 ++ + +++ + + +P L + ++ +QN + ++ P R+ Sbjct: 79 DDMMKTLVAHSVHTSAPSFIGHMTSALPYFVLPLSKMMVGLNQNLVKIETSKAFTPLERQ 138 Query: 235 TY 236 Sbjct: 139 VL 140 >gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans BC] gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans BC] Length = 151 Score = 35.8 bits (81), Expect = 10.0, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294 + V + + K +K ++ L G V+ + NG I E+ V Sbjct: 70 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129 Query: 295 NYTIRITDRINFDQKSLK 312 + IR+TD + ++ + Sbjct: 130 KFGIRLTDVVTPSERLRR 147 >gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e] gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561] gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28] gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e] gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578] gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923] Length = 515 Score = 35.8 bits (81), Expect = 10.0, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 80/264 (30%), Gaps = 45/264 (17%) Query: 78 KENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136 + + + S+ S N + + + ++ + L+ +E + Sbjct: 261 ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGIVQ---EDAELTELEVSAVQ 317 Query: 137 RTIAQI----SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192 + Q+ + +++ + T + SP +F + N + + + ++ Sbjct: 318 ELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKN-IEEGKTVEVIFPLEVDG 376 Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------------------ 234 + L P + +Q Q++++ + A Sbjct: 377 L-----LKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEKEATTPAEIIEPEKPAEPIKHTV 431 Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281 + V ++ K L+ ++ VI +L+ NG Sbjct: 432 IEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNG 491 Query: 282 KEIYSCELGRVGKNYTIRITDRIN 305 I L RV ++ I++T+ + Sbjct: 492 VTIGKGILVRVDDHFGIQMTELVR 515 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.137 0.322 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,511,682,907 Number of Sequences: 14124377 Number of extensions: 153903204 Number of successful extensions: 510324 Number of sequences better than 10.0: 2184 Number of HSP's better than 10.0 without gapping: 1908 Number of HSP's successfully gapped in prelim test: 724 Number of HSP's that attempted gapping in prelim test: 505673 Number of HSP's gapped (non-prelim): 2821 length of query: 318 length of database: 4,842,793,630 effective HSP length: 139 effective length of query: 179 effective length of database: 2,879,505,227 effective search space: 515431435633 effective search space used: 515431435633 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 81 (35.8 bits)