BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
(318 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|302878292|ref|YP_003846856.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
ES-2]
gi|302581081|gb|ADL55092.1| flagellar motor switch protein FliM [Gallionella capsiferriformans
ES-2]
Length = 329
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 101/312 (32%), Gaps = 8/312 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI---EKISSSLGYLYKKFLPKIFKEKMDLD 57
+ G++ + P + R ++ + + + + +
Sbjct: 17 VNGETEDEKAHPEADVGEIRPYNLASQERIVRGRMPTMEIINERFARLFRIGLFNFIRRT 76
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
+IS + KF + + + N NLV +++N+ G
Sbjct: 77 PEISVGPVRVLKFGEFVRNLAVPTNLNIIQPKPLRGNGLFIFDPNLVFLVVDNMFGGDGR 136
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
++ R + E+++ ++ +A + + T +
Sbjct: 137 FHTRVEGREFTQTEQRIIQKMLAVVFETYAKAWETVYPLEFEFVRSEM--NPQFANIATP 194
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236
NE V ++ + +F + +P TL + + Q + + + +R+
Sbjct: 195 NEVVIVTTFDIELGGNGGAFHICMPYSTLEPVKDLLFNNIQGEHLAVDKRWLQLLSRQVQ 254
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + TL+ V+ +++G VIP S +G I C+ G Y
Sbjct: 255 CAEIELAATLGQANITLERVLKMRVGDVIPLN--VDENITASIDGVPIMECKYGVFNNQY 312
Query: 297 TIRITDRINFDQ 308
++I + ++
Sbjct: 313 ALKIVKMLTTNE 324
>gi|152980580|ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp.
Marseille]
gi|151280657|gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp.
Marseille]
Length = 332
Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats.
Identities = 42/306 (13%), Positives = 91/306 (29%), Gaps = 11/306 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P + R+ + + + L + ++S +
Sbjct: 33 GVRPYNLATQERIVRG------RMPTLEIINERFSRLLRIGLFNFLHRSAEVSIGPVRVS 86
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S I + + + I NLV L++NL G ++ R +
Sbjct: 87 KYSEFIRNLVVPTNLNLIHMKPLRGTGLIVLDPNLVFLLVDNLFGGDGRFHTRVEGRDFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ +R + I + E + NE V +
Sbjct: 147 QTEQRIIQRILGIIFETYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVVATTFTI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ V+ P + + S Q ++ + I ++ V I +
Sbjct: 205 ELGPVSGDMHFCTPYAMIEPIRDLLTSSMQGETLEMDKRWIRLMTQQIQTAEVEILANMG 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K TL D++ ++ G +IP + + C G++ Y +R+ I
Sbjct: 265 SAKVTLGDILNMQKGDIIPIAVP--DTITAEVDSVPVMECSYGKLNGQYALRVEKLIYSA 322
Query: 308 QKSLKN 313
+ +
Sbjct: 323 NDTTQG 328
>gi|91776323|ref|YP_546079.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
KT]
gi|91710310|gb|ABE50238.1| flagellar motor switch protein FliM [Methylobacillus flagellatus
KT]
Length = 335
Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 97/304 (31%), Gaps = 7/304 (2%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+T L P + ++ + + + + L + ++S
Sbjct: 23 EDDTPALDPAGVREYNLATQERIVRGRMPTLEIINERFARLLRIGLFNFLRRTTEVSVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S I + + + + LV +++NL G ++
Sbjct: 83 VKISKYSEFIRNLVVPTNLNLVQMKPLRGTALMVFDPTLVFLIVDNLFGGDGRFHTRVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R +A + + + E + NE V +
Sbjct: 143 RDFTQTEQRIIQRVLAIVFETYAKSWEPVYKLE--FEYIRSEMNTQFANIATPNEVVVST 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
N+ + + + P + + S Q ++ + + ++ V +
Sbjct: 201 TFNIELGSASGEIHFCFPYSMIEPIRDLLTSPLQGEALGVDKRWVRLMTQQIQSAEVMLI 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + TL D++ +K+G VIP + + C+ G Y +R+
Sbjct: 261 ADLAKAEMTLGDILNMKVGDVIPL--SISEEIEAKVDNVPVMQCKYGVFNGQYALRVEKL 318
Query: 304 INFD 307
+ +
Sbjct: 319 LRSN 322
>gi|325981184|ref|YP_004293586.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212]
gi|325530703|gb|ADZ25424.1| flagellar motor switch protein FliM [Nitrosomonas sp. AL212]
Length = 325
Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats.
Identities = 39/309 (12%), Positives = 100/309 (32%), Gaps = 11/309 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ ++ + R+ + + + L M VDI
Sbjct: 25 VKEEAEKGGIRNYNLATQERIVRG------RMPTYEIINERFARLLRIGLFNFMRRTVDI 78
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + KFS + + + + L+ +++NL G
Sbjct: 79 AVGPVKVIKFSEFVRNLVVPTNLNMVHMKPLRGTALFVFDPELIFLIVDNLFGGDGRYHT 138
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ +R + + + + E + T NE
Sbjct: 139 RVEGRDFTQTEQRIIQRLLGVVFDEYEKSWKSVYPIQ--FEYVRSEMNPQFATIATPNEV 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V + ++ + N + IP + S+ Q + I +++
Sbjct: 197 VVCVTFDIDMGNKGGGLHVCIPYSMVEPIRDTLYSALQGDHLEVDKRWIKLLSQQVQGAE 256
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + K T + +++++ G +IP + + +G + C G + +Y +R
Sbjct: 257 VELVANLGGAKVTFEQILSMQSGDIIPLEIPKS--ISVCVDGVPVMDCRYGTMNGHYALR 314
Query: 300 ITDRINFDQ 308
+ I+ +
Sbjct: 315 VNSMISRSE 323
>gi|149928155|ref|ZP_01916401.1| flagellar motor switch protein M [Limnobacter sp. MED105]
gi|149823140|gb|EDM82378.1| flagellar motor switch protein M [Limnobacter sp. MED105]
Length = 348
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H+ P + R+ + + + + M +IS
Sbjct: 30 THEGVRPYNLATQERIVRG------RMPTLEIINERFARLIRIGLFNFMRRSPEISVGPV 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ K++ I + + ++ N +LV +++NL G ++ R
Sbjct: 84 KVLKYNEFIRNLVVPTNLNIMAMKPLRGNALFIFDPSLVFAVIDNLFGGDGRFHTRVEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ R + I + + P E + + +E V T +
Sbjct: 144 DFTQTEQRIIARMLEVIREEFVKAWAPVFPLKP--EYLRSEMHTQFANIATPSEIVVTTS 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ + S + IP T+ + S Q + + ++ V++
Sbjct: 202 FSIELGAGGGSLHICIPYSTMEPIRDLLYSSMQGDQAEPDKRWVTMLKKQVQMAEVDLVA 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + T+ D++ L+IG VIP + +++C G G Y +++ + +
Sbjct: 262 SLASTQLTVADIMELRIGDVIPIE--IDKVIEARVDNVPVFNCSYGTSGGQYALKVEEVL 319
Query: 305 NFDQKSLKNFLH 316
+S + L+
Sbjct: 320 AVSNESHADALN 331
>gi|82702481|ref|YP_412047.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
25196]
gi|82410546|gb|ABB74655.1| flagellar motor switch protein FliM [Nitrosospira multiformis ATCC
25196]
Length = 326
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 93/305 (30%), Gaps = 11/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
+ + P + R+ + + + L M +++
Sbjct: 27 QSTANPGFRPYNLATQERIVRG------RMPTLEIINERFARLLRLGLFNFMRRSANVTA 80
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ KFS + + + + LV +++NL G +P+
Sbjct: 81 GPVRVMKFSEFVRNLAAPSNLNLVHIKPLRGTSLFVFDPTLVFLVVDNLFGGDGRFLPKT 140
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ +R + + + E + NE V
Sbjct: 141 EGRDFTQTEQRIIQRLLNLVFDSYGKSWHPVYPIE--FEYLRAETNTQFANVATPNEVVV 198
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ +V + +P L + S+ Q ++ + + +++ V
Sbjct: 199 ATTFEVNFGSVVGEMHICMPYSILEPIRDLLSSTLQGEALEVDKRWVGRLSKQVQSAEVT 258
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + + L ++ +K+G VIP S +G + C+ G Y +R+
Sbjct: 259 LLANLTHAQVRLDQILNMKVGDVIPLDIP--EFVTASVDGVPVMECKYGISNGRYALRME 316
Query: 302 DRINF 306
+
Sbjct: 317 KMLAS 321
>gi|188586031|ref|YP_001917576.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350718|gb|ACB84988.1| flagellar motor switch protein FliM [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 333
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 14/314 (4%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ Q + P A+ K + + + + L + V+I
Sbjct: 28 KQQDTQQKVKPYDFRRPAKF------SKDQIRTLQMINENFARLLSTYLSAYLRSYVEIE 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S + + S + S + + N+ +++ L+G ET
Sbjct: 82 LASVDQVTYDEFMRSLTNPTIMGIFSAPPMEGKSLMEMNPNIAFAVIDRLMGGPGETFES 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
L+ +E+ +A++ ++ + + E P E + + NE V
Sbjct: 142 TG--ELTEIEEAVARKIFNRMLDSMLEAWKNVGELEPEFERIE--NNPQFTQIISPNEIV 197
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS----QNKSENQSEDLIDPFARKTYQ 237
+ ++ + F + +P L + + +E+ + ++
Sbjct: 198 AVVAFSVKVGEAEGLFNVCLPYIFLEPVIDRLSARFWFATGHQKKITEEESQALKNRLHK 257
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + + ++K+ + L+ G VI ++ L K + + G +
Sbjct: 258 TQVPVKAELARTRISVKEFLNLQEGDVISLNKPFESEIDLIVGKKTKFKGKPGSIKNKLA 317
Query: 298 IRITDRINFDQKSL 311
++IT + SL
Sbjct: 318 VQITQIVREGDDSL 331
>gi|74317625|ref|YP_315365.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
ATCC 25259]
gi|74057120|gb|AAZ97560.1| flagellar motor switch protein FliM [Thiobacillus denitrificans
ATCC 25259]
Length = 334
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 41/297 (13%), Positives = 94/297 (31%), Gaps = 11/297 (3%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
P + R+ + + + L + V+IS + K+
Sbjct: 36 RPYNLATQERIVRG------RMPTLEIINERFARLLRIGLYNFLRRGVEISVGPVRVSKY 89
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
S I + + + + +LV +++NL G ++ R +
Sbjct: 90 SEFIRNLVVPTNLNLVQFKPLRGTALMIFNPDLVFLMVDNLFGGDGRFHTRVEGRDFTQT 149
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E ++ +R + + + + NE V + + +
Sbjct: 150 EHRIIQRILNIVFEAYGKSWEPVYPIEFEFIRSEM--NTQFANIATPNEVVVAVTFAIEL 207
Query: 191 ENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
++ +P + + S Q ++ + I ++ V I +
Sbjct: 208 GQISGEMHFCMPYSMIEPIKDLLTSSLQAENLEVDKRWIRLMRQQIQLAEVEIVADLGTA 267
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ +L+D+V LK+G VIP +G + C G+ YT+R+ ++
Sbjct: 268 EVSLRDIVNLKVGDVIPLDIPP--TIEAKVDGVPVMECAYGKFNGQYTLRVEKLLST 322
>gi|71906405|ref|YP_283992.1| flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
gi|71846026|gb|AAZ45522.1| Flagellar motor switch protein FliM [Dechloromonas aromatica RCB]
Length = 338
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 39/312 (12%), Positives = 96/312 (30%), Gaps = 7/312 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+ G++ S + ++ + + + ++L M +
Sbjct: 18 VTGETDEPEESEGEGAGVRAYNIGTQERIVRGRMPTLELVNERFARYLRIGLFNYMHRNA 77
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+IS + K+S I + + NLV +++N+ G
Sbjct: 78 EISVGPIRVQKYSEFIRNLVVPTNLNLVIAKPLRGTALFVFDPNLVFLVVDNMFGGDGRF 137
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R + E+++ + + + ++ + + E + +
Sbjct: 138 HTRVEGRDFTPTEQRIIQGLLNVVFTEYSKSWKPVYDIN--FEYIRSEMNSQFANIATPS 195
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQ 237
E V + + + + P L + S Q+ + + I ++
Sbjct: 196 EIVVSTTFTLEFGGATADMHICFPYSMLEPIRDLLYSTMQSDQLSSDKRWIGTLRKQLQG 255
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V I + K TL ++ LK+G VIP + + C G+ Y
Sbjct: 256 AEVEIVALLGSGKITLGQILKLKVGDVIPLHIP--DKIEALVDSVPLMECTYGQQSGQYA 313
Query: 298 IRITDRINFDQK 309
+++ I +
Sbjct: 314 LKVDRFIASSPE 325
>gi|253996306|ref|YP_003048370.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8]
gi|253982985|gb|ACT47843.1| flagellar motor switch protein FliM [Methylotenera mobilis JLW8]
Length = 334
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 37/311 (11%), Positives = 94/311 (30%), Gaps = 12/311 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + + R+ + + + + + V++S
Sbjct: 29 SEAEGVRDYNLATQERIVRG------RMPTLEIINERFARLVRIELFNFLRRTVEVSVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S I + + + + LV +++N+ G ++
Sbjct: 83 VRITKYSDFIRNLVVPTNLNLVQMKPLRGTALMVFDPTLVFLVVDNMFGGDGRFHTRVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R +A + + E + NE V
Sbjct: 143 RDFTQTEQRIIQRILAIVFETYAKSWEPVYPIE--FEYLRSEMNTQFANIATPNEVVVVT 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
N+ + + +P + + S Q + + + ++ + I
Sbjct: 201 TFNVELGPASGEIHFCMPYSMVEPIRDLLTSPLQGEVLGADKRWVKLMTQQVQAAEIEIV 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + L V+ +K+G VIP +G + C+ G Y +R+
Sbjct: 261 ADLATTEMHLGKVLNMKVGDVIPISM--DDAIEAKVDGVPVMLCKYGLFNGQYALRVEKL 318
Query: 304 INFDQ-KSLKN 313
+ + + +K
Sbjct: 319 LRSNSTEYIKG 329
>gi|302343739|ref|YP_003808268.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
2075]
gi|301640352|gb|ADK85674.1| flagellar motor switch protein FliM [Desulfarculus baarsii DSM
2075]
Length = 328
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 100/314 (31%), Gaps = 6/314 (1%)
Query: 1 MRGQSIHKNTSPL---HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
M G I T +++ LT + + + + + +
Sbjct: 17 MSGGEIEVETDAGPEADGVIVYDLTNQDRIIRGRMPTLEIINDRFARLFRTTLSSALRKI 76
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
VD++ TS KF + S + + + LV L+E G +
Sbjct: 77 VDMTTTSVDMVKFGEFMRSLPVPTSLHIFKMDPLRGHAIFVLESKLVFNLVETFFGGAGG 136
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
++ R + +E++L ++ + + E + + + +
Sbjct: 137 GNVKIEGRDFTAIEQQLTRKVVMLALKDMESAWKPVHEVT--MVYSRTEINPQFASIVPP 194
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236
+ V + + +E+ A + + IP T+ Q+ + + F ++
Sbjct: 195 TDVVIVVKFELEMEHTAGTVTVCIPYSTIEPIRTKLYAGFQSDQLEVDHEWMRRFRKQLR 254
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ V + + T D++ LK+G V+ + G + G++ N
Sbjct: 255 EAEVEFTVELGRTELTSGDLLQLKVGDVLQLDSDINGHLVAMVEGVPKFLGRPGQMRGNK 314
Query: 297 TIRITDRINFDQKS 310
R+ ++ +
Sbjct: 315 AFRVEGFKDYGAEI 328
>gi|134095084|ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
gi|55977142|gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans]
gi|133738987|emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans]
Length = 332
Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 93/306 (30%), Gaps = 11/306 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P + R+ + + + L + ++S +
Sbjct: 33 GVRPYNLATQERIVRG------RMPTLEIINERFSRLLRIGLFNFLHRSAEVSIGPVRVS 86
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S I + + + I NLV L++NL G ++ R +
Sbjct: 87 KYSEFIRNLVVPTNLNLIHMKPLRGIGLIVLDPNLVFLLVDNLFGGDGRFHTRVEGRDFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ +R + I + E + NE V +
Sbjct: 147 QTEQRIIQRILGIIFETYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVVATTFTI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ V+ +P + + S Q ++ + I ++ V I +
Sbjct: 205 ELGPVSGDLHFCVPYSMIEPIRDLLTSSMQGETLEMDKRWIRLMTQQIQTAEVEILANMG 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K TL D++ +KIG +I +G + C G++ Y +R+ I
Sbjct: 265 SAKVTLGDILNMKIGDIISIAVP--EQVTAEVDGVPVMECSYGKLNGQYALRVEKLIYSA 322
Query: 308 QKSLKN 313
+ +
Sbjct: 323 NDTTQG 328
>gi|329901244|ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
IMCC9480]
gi|327549176|gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium
IMCC9480]
Length = 333
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 11/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P + R+ + + + L + ++S +
Sbjct: 31 QSGVRPYNLATQERIVRG------RMPTLEIINERFARLLRIGLFNFLRRSAEVSIGPVR 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
K+S I + + + + NLV +++NL G ++ R
Sbjct: 85 VSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVFDPNLVFLIVDNLFGGDGRFHTRVEGRD 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R +A + + E + NE V
Sbjct: 145 FTQTEQRIIQRILAIVFENYAKSWEPVYPVE--FEYIRSEMNTQFANIATPNEVVICTTF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ + V+ IP T+ I S Q ++ + I ++ V I
Sbjct: 203 TIELGPVSGEMHFCIPYSTIEPIRDILTSSLQGETLEVDKRWIRLMTQQIQTAEVEIIAD 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ ++ +K+G +IP + +G + C G+ Y +R+ +
Sbjct: 263 FGVARSNFGAILNMKVGDIIPLAVP--DVVLAKVDGVPVMECTYGKFNGQYALRVEKLLA 320
Query: 306 F 306
Sbjct: 321 Q 321
>gi|253998475|ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
gi|313200550|ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688]
gi|253985154|gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus sp. SIP3-4]
gi|312439866|gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688]
Length = 334
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 34/300 (11%), Positives = 92/300 (30%), Gaps = 11/300 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M V++S +
Sbjct: 33 GVREYNLATQERIVRG------RMPTLEIINERFARLLRIGLFNFMRRSVEVSVGPVRIS 86
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S + + + ++ + +LV ++++N+ G ++ R +
Sbjct: 87 KYSEFVRNLVVPTNLNLVHMNPLRGTGLMVFDPSLVFSIVDNMFGGDGRFHTRIEGRDFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ +R +A + + + E + NE + ++
Sbjct: 147 QTEQRIIQRVLAIVIENYEKSWEPVYQVK--FEYLRSEMNTQFANIATPNEVIVATTFSI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ P + + S Q + + + ++ V + +
Sbjct: 205 ELGPAGGEIHFCFPYSMIEPVRDLLTSSLQGEVLGVDKRWVRLMTQQIQAAEVELVANLA 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L DV+ +K+G VIP + + C+ G Y++R+ + +
Sbjct: 265 KARMQLGDVLNMKVGDVIPLN--ISETIEAHVDNVPVMECKYGVFNGQYSLRVEKLLRAN 322
>gi|297538201|ref|YP_003673970.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
gi|297257548|gb|ADI29393.1| flagellar motor switch protein FliM [Methylotenera sp. 301]
Length = 334
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 36/311 (11%), Positives = 95/311 (30%), Gaps = 12/311 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + + R+ + + + + + V++S
Sbjct: 29 SNAGDVRDYNLATQERIVRG------RMPTLEIINERFARLVRIELFNFLRRTVEVSVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + + + LV +++N+ G ++
Sbjct: 83 VRITKYSDFVRNLVVPTNLNLIQMKPLRGTALMVFDPTLVFLVVDNMFGGDGRFHTRVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + ++ E + NE V +
Sbjct: 143 RDFTQTEQRIIQRILNIVFETYSKSWEPVYPVQ--FEYMRSEMNTQFANIATPNEVVIAV 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
N+ + + P L + S Q + + + ++ V I
Sbjct: 201 TFNVELGPASGEIHFCFPYSMLEPLRDMLSSPLQGEVLGTDKRWVKLMTQQVQAAEVEIV 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + DV+ +K+G V+P + +G + C+ G Y +R+
Sbjct: 261 ADLAKTNMMIGDVLNMKVGDVVPLN--IEESIEAQVDGVPVMLCKYGMFNGQYALRVEKL 318
Query: 304 INFDQ-KSLKN 313
+ + + +K
Sbjct: 319 LRSNSTEYIKG 329
>gi|254491591|ref|ZP_05104770.1| flagellar motor switch protein FliM [Methylophaga thiooxidans
DMS010]
gi|224463069|gb|EEF79339.1| flagellar motor switch protein FliM [Methylophaga thiooxydans
DMS010]
Length = 340
Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 11/300 (3%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
R+ + + ++L + + +IS + Q KF
Sbjct: 38 RDYDFGNEERIIRG------RMPTLEMINERFGRYLRISLFDMLRRSAEISVSGIQVMKF 91
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
S +H+ + L I LV T+L+N G ++ R +
Sbjct: 92 SEYMHTLFVPTSLNLIHLHPLRGTGLIVLEPKLVFTILDNYFGGEGRFQARIEGREFTAT 151
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E ++ + + L + S E + +E V ++ +
Sbjct: 152 ELRVIRMVLNLCFTDLTEAWSPVMEVDFEFV--SHEVNPQFANIVSPSEVVVISTFHVEL 209
Query: 191 ENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ L P L + + Q+ + +V I ++
Sbjct: 210 DGGGGDIHLTFPYSMLEPIRELLDTGLQSDRTADDGRWSKAMREELMVADVEIWAKLAET 269
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
TL + LK G +IP + + ++ G + ++I + I +
Sbjct: 270 SLTLAQIHKLKTGDIIPIQMPKN--VVAMVEDVPMFRASYGEHNEKAALKIAEVIEHPKD 327
>gi|257095345|ref|YP_003168986.1| flagellar motor switch protein FliM [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047869|gb|ACV37057.1| flagellar motor switch protein FliM [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 334
Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P R+ + + ++L M +IS S +
Sbjct: 32 DDGPRPYDLGTQERIVRG------RMPTLELVNERFARYLRIGLFNYMHRSTEISVGSIR 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
K+S + + + +LV +++N+ G ++ R
Sbjct: 86 VQKYSEFTRNLVVPTNLNLINAKPLRGTALFVFDPSLVFLVVDNMFGGDGRFHTRVEGRD 145
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ K + + ++ + + E + +E V
Sbjct: 146 FTATEQRIIKGLLGVVFTEYSRSWKPVYDLT--FEYVRSEMNSQFANIATPSEIVVATTF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ + + P + + + Q+ + + ++ V I R
Sbjct: 204 SIEFGGSTADLHICFPYSMIEPIRDLLFSTMQSDQLSTDRRWVIMLRKQLTNAEVEITAR 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ +L+ ++ +K+G ++P I + + C G+ G Y I+I +
Sbjct: 264 LATATVSLRQILEMKVGDIVPIDIP--EKVIAQVDDVPLMECRYGQQGGQYAIKIDHFMT 321
Query: 306 FD 307
+
Sbjct: 322 IE 323
>gi|186477685|ref|YP_001859155.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815]
gi|184194144|gb|ACC72109.1| flagellar motor switch protein FliM [Burkholderia phymatum STM815]
Length = 332
Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 93/308 (30%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS P + R+ + + + L M +IS
Sbjct: 29 QSDRAGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRTAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S + + + NLV +++NL G ++
Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + + E + + NE V
Sbjct: 143 GREFTQTEQRIIHKLLNLVFEHYTAAWKSVRPL--SFEYTRSEMHTQFANVATPNEIVIV 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + +P + + S Q ++ + +++ V +
Sbjct: 201 TQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T ++++ +K G V+P +G + C G Y +R+
Sbjct: 261 TADLAQIPVTFQEILNMKAGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318
Query: 303 RINFDQKS 310
I+ ++
Sbjct: 319 MISAAEQM 326
>gi|90406812|ref|ZP_01215004.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
gi|90312049|gb|EAS40142.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
Length = 352
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 39/308 (12%), Positives = 97/308 (31%), Gaps = 11/308 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G + + R+ + + + L + ++S
Sbjct: 31 DGGAEDDSHIHFDFSSQDRIVRG------RMPTLELVNERFARHLRISLFNMLRHTAEVS 84
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
Q KF +H+ + + LV L+EN G +
Sbjct: 85 INGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHAK 144
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ + + I + + + E E +
Sbjct: 145 IEGREFTPTERRIIQMLLKIIFEDYKDAWAPV--MTADFEYLDSEVNPAMANIVSPTEVI 202
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
+ ++ ++ F + +P L + + Q+ E+ + + ++V
Sbjct: 203 VVNSFHIELDGGGGDFHIAMPYSMLEPIRELLDAGVQSDKEDTDQRWSQALEDEIMDVDV 262
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ ++ K+ L+D++ +G +IP ++ G + +LG+ N ++I
Sbjct: 263 YLTAKLLEKQLPLRDMINWSVGDIIPVELP--EELLVCVEGLPSFHAKLGKSNDNLALKI 320
Query: 301 TDRINFDQ 308
DRI +
Sbjct: 321 IDRIKRPE 328
>gi|295399820|ref|ZP_06809801.1| flagellar motor switch protein FliM [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111668|ref|YP_003989984.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
gi|294978223|gb|EFG53820.1| flagellar motor switch protein FliM [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216769|gb|ADP75373.1| flagellar motor switch protein FliM [Geobacillus sp. Y4.1MC1]
Length = 334
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 44/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + + L F ++ V I
Sbjct: 29 LKKEETGKRVKVYDFKRALRF------SKDQIRSLTRIHENFARLLTTFFAAQLRTYVQI 82
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + I S + + + + + + + N+ +L+ ++G ++
Sbjct: 83 SVASADQIPYEEFIRSIPKMTFLNVFEVPPLNGHILMEVNPNIAYAMLDRVMGGKGTSVN 142
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ N L+ +E ++ + + L + E P DF + N+
Sbjct: 143 KIDN--LTEIETRIISNLFDKAFSNLRDAWESVAEIDPVFTDFEV--NPQFLQMISPNDT 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I++N I + + IP L Q + + S + + R+
Sbjct: 199 VVVISLNTQIGETSGMMNICIPYVVLEPIIPKLSVHYWMQAQKKESSPEETEALERRIRF 258
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + T++D + L++G VI + ++ ++ + G+ K
Sbjct: 259 AKLPIIAELGTATITIQDFLQLEVGDVIELDQSIQQPLLIKVGDIPKFTGQPGKRNKRLA 318
Query: 298 IRITDRINFDQKSLKN 313
++I D +
Sbjct: 319 VQILDTFKGAENYDDE 334
>gi|88813208|ref|ZP_01128448.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
gi|88789530|gb|EAR20657.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
Length = 336
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
S R+ + + + L + ++S +
Sbjct: 35 GISAYEFQFQDRIVRG------RMPTLEMINERFARLLRTGLFNMLRKTAEVSVVGVELL 88
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KFS +H+ + + LV L++N G ++ R +
Sbjct: 89 KFSEYVHTLYLPTSLNLVKVPPLRGTGLCVLDPKLVFILVDNFFGGDGRYFSKIEGREFT 148
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ ++ + Q A L + + E + +E V ++
Sbjct: 149 PTETRVIRKVLEQGFADLREAWNPVLPVD--FEFLNMEVNPQFANIVSPSEAVVVSRFHV 206
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + +P + + + Q+ + + + + V + R+
Sbjct: 207 ELNGGGGDLHITLPYTMIEPVRDVLSAGVQSDRNDVDQRWVRSLREEMKSAPVRLSCRLT 266
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ +L +++ L+ G +IP +L A + LG G N ++IT+ I
Sbjct: 267 EARVSLHELMRLQPGDIIPIEMP--ETVVLRAAEVPVLRGRLGCSGGNVAVKITEPIRAP 324
Query: 308 Q 308
Q
Sbjct: 325 Q 325
>gi|119899013|ref|YP_934226.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
gi|119671426|emb|CAL95339.1| flagellar motor switch protein FliM [Azoarcus sp. BH72]
Length = 336
Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats.
Identities = 36/306 (11%), Positives = 99/306 (32%), Gaps = 11/306 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ P + R+ + + ++L M + ++S
Sbjct: 29 EVEQGGVRPYNLATQERIVRG------RMPTMELINERFARYLRIGLFNYMHRNAEVSVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K++ + + + + NLV +++N+ G ++
Sbjct: 83 PIKVQKYAEFVRNLVVPTNLNLVLGKPLRGTGLVVFDPNLVFLVVDNMFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + + LE + +E V +
Sbjct: 143 GRDFTPTEQRIIQGMLNVVFTEYAKAWAPVFKLE--LEYVRSEMNSQFANIATPSEIVVS 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
+ ++ + + + P + + S Q+ Q I +R+ V +
Sbjct: 201 TSFSLELGGAQAEMHICFPYSMVEPIRDLLYSTMQSDHLTQDRRWITLLSRQLQTAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + TL+D+V +++G VIP + +G + C G + ++
Sbjct: 261 TCNLGTARVTLRDIVNMRVGDVIPLQ--VSELLQATVDGVPVLECRYGTQNGQFAFKVDR 318
Query: 303 RINFDQ 308
+ D+
Sbjct: 319 FLGPDE 324
>gi|300311368|ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae
SmR1]
gi|300074153|gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae
SmR1]
Length = 334
Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 84/297 (28%), Gaps = 11/297 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
+ R+ + + + + +IS + K
Sbjct: 35 VRTYNLATQERIVRG------RMPTLEIINERFARLFRIGLFNFIHRTAEISVGPVKVSK 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
+S I + + + + + V L++N+ G ++ R +
Sbjct: 89 YSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDPQFVFMLVDNMFGGDGRFHTRIEGREFTP 148
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E+++ R + + + NE V + +
Sbjct: 149 TEQRIIMRVLEITFETYAKSWEPIYPIEFEFIRSEM--NTQFANIATPNEVVVSTTFTVE 206
Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ V+ + P + S Q ++ + I ++ V +
Sbjct: 207 LGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALEVDKRWIRLMKQQIQTAEVELIVNFGT 266
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ D++ +++G VIP T +G + C G+ Y +R+ ++
Sbjct: 267 ARVNFTDLLHMQVGDVIPLQ--TNTTVEAQVDGVPVMECSYGQSNGQYALRVEKLLS 321
>gi|134294173|ref|YP_001117908.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4]
gi|134137330|gb|ABO53073.1| flagellar motor switch protein FliM [Burkholderia vietnamiensis G4]
Length = 332
Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats.
Identities = 35/311 (11%), Positives = 88/311 (28%), Gaps = 11/311 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ Q P + R+ + + + L M +I
Sbjct: 26 IDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + K+S + + + NLV +++NL G
Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ + + + + + + NE
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ + + +P + + S Q ++ + +++
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + T + ++ L+ G V+P +G + C G Y +R
Sbjct: 258 VELTADLAEIPATFEKILNLRAGDVLPLE--IDDTITAKVDGVPVMECGYGIFNGQYALR 315
Query: 300 ITDRINFDQKS 310
+ I+
Sbjct: 316 VQKMISAGDTM 326
>gi|237653569|ref|YP_002889883.1| flagellar motor switch protein FliM [Thauera sp. MZ1T]
gi|237624816|gb|ACR01506.1| flagellar motor switch protein FliM [Thauera sp. MZ1T]
Length = 336
Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats.
Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 11/303 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ P + R+ + + ++L M + ++S +
Sbjct: 33 EGVRPYNLATQERIVRG------RMPTLELINERFARYLRIGLFNYMHRNAEVSAGPIKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K++ + + + + + NLV +++N+ G ++ R
Sbjct: 87 QKYAEFVRNLVVPTNLNLITAKPLRGTGLVVFDPNLVFLVVDNMFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + A + + P + +E V + +++
Sbjct: 147 TPTEQRIIRGMLDVVFAEYVRAWAPVFNLQPEFIRSEM--NSQFANIATPSEVVVSTSLS 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + + P L + S Q+ I R+ V +
Sbjct: 205 VEFGGSQAEMHICFPYSMLEPIRDLLYSSMQSDHLTSDRRWIKLLTRQLQTAEVELACSF 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ +L+D+V +++G VIP + +G ++ C G Y +R+ I
Sbjct: 265 GTARVSLRDIVDMRVGDVIPLAVQP--VLQAEVDGVPVFECRQGTRNGRYALRVERFITA 322
Query: 307 DQK 309
+
Sbjct: 323 EDN 325
>gi|188592199|ref|YP_001796797.1| flim: flagellar motor switching and energizing component
[Cupriavidus taiwanensis LMG 19424]
gi|170938573|emb|CAP63560.1| FliM: flagellar motor switching and energizing component
[Cupriavidus taiwanensis LMG 19424]
Length = 339
Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 10/302 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P + R+ + + + L + DIS S +
Sbjct: 35 EGGVRPYNLATQERIIRG------RLHTLEIINERFARSLRTALFNFIRRGADISVGSVR 88
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + + L NLV +++NL G ++ R
Sbjct: 89 IEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 148
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + T E + K NE V T
Sbjct: 149 FTQTEQRIIQRMLELTLTSYGNAWRTVHPIE--TEYIRSEMHPKFANVATHNEAVVTTAF 206
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
++ + V + +P + + ++ + + + + + V +
Sbjct: 207 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKGWVTQLSTQLRAAEVELVAEF 266
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++T+ +V+ ++ G V+P +G + C G + Y +R+ IN
Sbjct: 267 AHLQSTVAEVLAMRAGDVLPIELP--EKVFGKVDGVPVMQCGFGTMNGQYALRVERMINH 324
Query: 307 DQ 308
Sbjct: 325 QD 326
>gi|308048759|ref|YP_003912325.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
gi|307630949|gb|ADN75251.1| flagellar motor switch protein FliM [Ferrimonas balearica DSM 9799]
Length = 357
Score = 255 bits (651), Expect = 6e-66, Method: Composition-based stats.
Identities = 41/310 (13%), Positives = 99/310 (31%), Gaps = 5/310 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
S + T + + + + + L M + ++S
Sbjct: 22 EDDQFSGGEGATIYDFTSQDRIVRGRMPTLELVNERFARHLRISLFNMMRRNAEVSINGV 81
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF +H+ + I LV L++N G ++ R
Sbjct: 82 QMVKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRFQAKIEGR 141
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + + + + + E E V +
Sbjct: 142 EFTPTERRIIQLLLKTVFEDYKESWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSS 199
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F + +P + + + Q+ ++ + + V++ T
Sbjct: 200 FHIELDGGGGDFHITLPYSMIEPIRELLDAGVQSDKQDTDMRWAKALQDEIMDVPVDLST 259
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ ++ TL+D++ +K G +IP ++ + +LGR G N +RI +RI
Sbjct: 260 MLLEQELTLRDIMEMKAGDIIPVEMP--EHLLVRIEDLPTFRGKLGRKGDNVAVRIEERI 317
Query: 305 NFDQKSLKNF 314
+
Sbjct: 318 PRPKSYKNEL 327
>gi|107021592|ref|YP_619919.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU
1054]
gi|116688064|ref|YP_833687.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
HI2424]
gi|170731414|ref|YP_001763361.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
MC0-3]
gi|206561843|ref|YP_002232608.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
J2315]
gi|254246641|ref|ZP_04939962.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184]
gi|105891781|gb|ABF74946.1| flagellar motor switch protein FliM [Burkholderia cenocepacia AU
1054]
gi|116646153|gb|ABK06794.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
HI2424]
gi|124871417|gb|EAY63133.1| Flagellar motor switch protein [Burkholderia cenocepacia PC184]
gi|169814656|gb|ACA89239.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
MC0-3]
gi|198037885|emb|CAR53829.1| flagellar motor switch protein FliM [Burkholderia cenocepacia
J2315]
Length = 332
Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats.
Identities = 35/311 (11%), Positives = 89/311 (28%), Gaps = 11/311 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ Q P + R+ + + + L M +I
Sbjct: 26 VDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + K+S + + + NLV +++NL G
Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ + + + + + + NE
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ + + +P + + S Q ++ + +++
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + +T + ++ L+ G V+P + +G + C G Y +R
Sbjct: 258 VELTANLAEISSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALR 315
Query: 300 ITDRINFDQKS 310
+ I
Sbjct: 316 VQKMIGASDSM 326
>gi|254251031|ref|ZP_04944349.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
gi|124893640|gb|EAY67520.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
Length = 332
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 35/311 (11%), Positives = 88/311 (28%), Gaps = 11/311 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ Q P + R+ + + + L M +I
Sbjct: 26 VDEQRDASGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + K+S + + + NLV +++NL G
Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ + + + + + + NE
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ + + +P + + S Q ++ + +++
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + T + ++ L+ G V+P +G + C G Y +R
Sbjct: 258 VELTADLAEIPVTFEKILNLRAGDVLPLEIP--DTITAKVDGVPVMECGYGIFNGQYALR 315
Query: 300 ITDRINFDQKS 310
+ I+
Sbjct: 316 VQKMISAGDTM 326
>gi|309779462|ref|ZP_07674223.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
gi|308921703|gb|EFP67339.1| flagellar motor switch protein FliM [Ralstonia sp. 5_7_47FAA]
Length = 336
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 38/308 (12%), Positives = 97/308 (31%), Gaps = 7/308 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+ + P + ++ + + + + M +
Sbjct: 19 VSDDADDDPVEAADPSGIRSYNLGSQERIVRGRMPTLEIINERFARNWRIGLFNFMRRNA 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+IS + K+S I + + + NL+ +++NL G
Sbjct: 79 EISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFGGDGRF 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R + VE+++ +R + + + + N
Sbjct: 139 HMRVEGRDFTDVEQRIIQRMLHLVFEHYAKAWQPVYPIDFEFLRMEMHT--EFANVATPN 196
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
E V T + ++ + + + +P + S+ Q ++ + + +++
Sbjct: 197 EVVITTSFSIELGSNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDKRWLRLLSQQVQT 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + K + D++ +K+G VIP C +G + C G Y
Sbjct: 257 AEVELIADLATAKVQVSDILNMKVGDVIPLEL--DDCVTAKVDGVPVMECNYGTFNGQYA 314
Query: 298 IRITDRIN 305
+R+ +N
Sbjct: 315 LRVNRMLN 322
>gi|114332022|ref|YP_748244.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
gi|114309036|gb|ABI60279.1| flagellar motor switch protein FliM [Nitrosomonas eutropha C91]
Length = 330
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 11/301 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G + P R+ + + L + VDIS
Sbjct: 31 NGVTYPGGIRPYDMATQERIVRG------RMPALEIINARFANSLQIGLYNFLRRGVDIS 84
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S ++ K+S S + S+ I NL+ +++N+ G +
Sbjct: 85 AGSIKTIKYSEFTRSLVVPANINMVSMKPLRGTALITIDPNLIFLIVDNMFGGDGRFHTR 144
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+ + +R + + + + E + + V
Sbjct: 145 VEGREFTLTEQGIIRRLLDVLFENYEKAWKSVYPV--RFEYIRAEMNPQFANIATPTDVV 202
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNV 240
+ + + F + P L + S Q + I R+ +
Sbjct: 203 VASSFELNLGGNRGEFYICTPYTMLEPIRDLLNNSMQEDHAEVDNNWIKSLTRQVQGAEI 262
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + + TL ++ ++ G VI + ANG I C G + +Y +++
Sbjct: 263 EIIANLGHTRVTLHQILNMQEGDVIALDIP--DTVVAMANGVPIMDCHYGILNDHYALKV 320
Query: 301 T 301
Sbjct: 321 K 321
>gi|30248480|ref|NP_840550.1| flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
19718]
gi|30138366|emb|CAD84375.1| Flagellar motor switch protein FliM [Nitrosomonas europaea ATCC
19718]
Length = 330
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P + R+ + + L + VDIS S ++
Sbjct: 38 GVRPYNMATQERIVRG------RMPALEIINARFANSLQIGLYNFLRRGVDISAGSIKTI 91
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S S + S+ NL+ +++N+ G ++ R +
Sbjct: 92 KYSEFTRSLVVPANINLVSMKPLRGTALFTIDPNLIFLIVDNMFGGDGRFHTRVEGREFT 151
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+ + +R + + + + E + + V +
Sbjct: 152 LTEQGIIRRLLDVLFEHYEKAWQSVYPVK--FEYIRAEMNPQFANIVTPTDIVVASAFEL 209
Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ F IP L + S Q ++ I R+ + I +
Sbjct: 210 NLGGNRGEFYTCIPYTMLEPIRDLLNNSMQEDRAEVDKNWIKSLTRQVQGAEIEIIANLG 269
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TL ++ ++ G VI + AN I C G + +Y +++ + +
Sbjct: 270 QTQVTLHQILNMQEGDVIALDIP--DTVVAIANNVPIMDCHYGILNGHYALKVKTVRSPN 327
Query: 308 Q 308
+
Sbjct: 328 E 328
>gi|85859177|ref|YP_461379.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
gi|85722268|gb|ABC77211.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
Length = 333
Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + V ++ S KF
Sbjct: 38 YDLASQDRIIRG------RMPTLEMTNEKFARMFRTTLSSMLRKVVAVNSMSVDMIKFGE 91
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ + + N + ++ TL++ L G + + + ++ R + +E
Sbjct: 92 FLKTLPVPTSLHIFRMEPLRGNAIFVMESKVIFTLVDVLFGGAGKELFKVEGREFTAIET 151
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L K+ I + L + T + + + + V ++ + +E
Sbjct: 152 NLIKKVILSALSDLEKAWKTMHDI--RVIYQRSEINPQFAQIVPPTDLVFVVDFEIEVEY 209
Query: 193 VASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L IP T+ + Q++ + + F +++I +
Sbjct: 210 ITGILKLCIPYSTVEPIREKLQAGFQSEQLEVDKVWMKRFRDNLMLAHLDILIELGSTLI 269
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
+ KDVV LK G VI + G + G N +RI++ + D++ +
Sbjct: 270 SAKDVVNLKPGDVITLDQYCTDPVNIFVEGMMKFKGYPGTYKGNQAVRISEIV-QDKEVM 328
Query: 312 K 312
Sbjct: 329 D 329
>gi|239826624|ref|YP_002949248.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
gi|239806917|gb|ACS23982.1| flagellar motor switch protein FliM [Geobacillus sp. WCH70]
Length = 334
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 101/289 (34%), Gaps = 7/289 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V IS S + I S + +
Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFAAQLRTYVQISVASADQIPYEEFIRSIPKMTFLNVFE 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + I + N+ +L+ ++G +I ++ N L+ +E ++ + + L
Sbjct: 110 VPPLNGHILIEVNPNIAYAMLDRVMGGRGTSINKVDN--LTEIETRIMSNLFDKAFSNLR 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P DF + N+ V I++N + + + IP L
Sbjct: 168 DAWESIAEIDPIFTDFEV--NPQFLQVISPNDTVVVISLNTKVGETSGMINICIPHVVLE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q + + S + + R+ + I + T+++ + L++G V
Sbjct: 226 PIIPKLSVHYWMQAQKKESSPEETEAIERRIRFAKLPIIAELGTATITIQEFLQLEVGDV 285
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
I + ++ + + G+ K ++I D ++
Sbjct: 286 IELDQSIQQPLLIKVGDIPKFIGQPGKRNKRLAVQILDAFKGEEDYNDE 334
>gi|91785619|ref|YP_560825.1| flagellar motor switch protein FliM [Burkholderia xenovorans LB400]
gi|296157439|ref|ZP_06840274.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1]
gi|91689573|gb|ABE32773.1| Flagellar motor switch protein FliM [Burkholderia xenovorans LB400]
gi|295892211|gb|EFG71994.1| flagellar motor switch protein FliM [Burkholderia sp. Ch1-1]
Length = 332
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS P + R+ + + + L M +IS
Sbjct: 29 QSDRAGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S + + + NLV +++NL G ++
Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + + NE V
Sbjct: 143 GRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIV 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + +P + I S Q ++ + +++ V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 261 TADLAKVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318
Query: 303 RINFDQKS 310
I+
Sbjct: 319 MISAADTM 326
>gi|172059107|ref|YP_001806759.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6]
gi|171991624|gb|ACB62543.1| flagellar motor switch protein FliM [Burkholderia ambifaria MC40-6]
Length = 332
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
P + R+ + + + L M +IS + +
Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S + + + NLV +++NL G ++ R
Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + + + + NE V +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + + +P + + S Q ++ + +++ V + +
Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+T + ++ L+ G V+P + +G + C G Y +R+ I+
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322
Query: 307 DQKS 310
Sbjct: 323 SDTM 326
>gi|255021379|ref|ZP_05293427.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
51756]
gi|254969242|gb|EET26756.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
51756]
Length = 337
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 91/302 (30%), Gaps = 11/302 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ P R+ + + + +IS +
Sbjct: 35 SVQPYDLANQDRIVRG------RMPTLEVVNERLARLWRVSLFNFLRRSAEISVGPVRLV 88
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S I S + + + L+ +++N G ++ R +
Sbjct: 89 KYSEFIRSLMVPSNINIVQVKPLRGSALFVFDARLIFAVVDNYFGGDGRFHARIEGREFT 148
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+E+++ KR + + S + P L + + E V N+
Sbjct: 149 PLEQRIIKRLLDLVFKDFKSAWSPVIDLQPELSRSEV--NPQFVSIATPTEVVIVSTFNI 206
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+E+ SF + +P + + + + + + + +
Sbjct: 207 ELESGTGSFQICLPYGMVEPVRDQLTAGTTADRSEIDKRWVQSLHDELREATLELRVEFA 266
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+++ ++ L++G VIP + +G ++ G G Y I+ + + +
Sbjct: 267 RLPISVRQLLALRVGDVIPLERP--ETLVARVDGIPVFRGPYGVHGGKYAIQFHEALPPE 324
Query: 308 QK 309
+
Sbjct: 325 TE 326
>gi|115350088|ref|YP_771927.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD]
gi|115280076|gb|ABI85593.1| flagellar motor switch protein FliM [Burkholderia ambifaria AMMD]
Length = 332
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 11/304 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ P + R+ + + + L M +IS + +
Sbjct: 33 SSVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S + + + NLV +++NL G ++ R
Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + + + + NE V +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + + +P + + S Q ++ + +++ V + +
Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+T + ++ L+ G V+P + +G + C G Y +R+ I+
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322
Query: 307 DQKS 310
Sbjct: 323 SDTM 326
>gi|78064701|ref|YP_367470.1| flagellar motor switch protein FliM [Burkholderia sp. 383]
gi|77965446|gb|ABB06826.1| Flagellar motor switch protein FliM [Burkholderia sp. 383]
Length = 332
Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 34/311 (10%), Positives = 89/311 (28%), Gaps = 11/311 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ Q P + R+ + + + L M +I
Sbjct: 26 VDEQRDTSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + K+S + + + NLV +++NL G
Sbjct: 80 SVSQVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ + + + + + + NE
Sbjct: 140 RVEGRDFTATEQRIIGKLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEI 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ + + +P + + S Q ++ + +++
Sbjct: 198 VIVTQFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + + ++ L+ G V+P + +G + C G Y +R
Sbjct: 258 VELTANLAEISSNFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALR 315
Query: 300 ITDRINFDQKS 310
+ I+
Sbjct: 316 VQKMISAGDSM 326
>gi|319649555|ref|ZP_08003711.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
gi|317398717|gb|EFV79399.1| flagellar motor switch protein M [Bacillus sp. 2_A_57_CT2]
Length = 332
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 52/312 (16%), Positives = 109/312 (34%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + + L F ++ V I
Sbjct: 28 LKKEQTEKKVKVYDFKRALRF------SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQI 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + I S + + + + + + N+ +++ L+G +I
Sbjct: 82 SVASADQIPYEEFIRSIPKMTILNVIEVPPLDGRILMEVNPNVAYAMMDRLMGGRGTSIN 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ N L+ +E K+ T + L + ST + P L DF + NE
Sbjct: 142 KVDN--LTEIETKIMSATFERAFENLREAWSTIADIDPLLADFEV--NPQFLQMVSPNET 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I++N TI + + IP L Q + + ++I R ++
Sbjct: 198 VVVISLNTTIGETSGMINICIPHVVLEPIIPKLSVHYWMQTDKKEREPEVIARLERNIHK 257
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + ++D ++L IG VI I+ + + G++ K
Sbjct: 258 AEVPVICELGSSDIAIQDFLSLDIGDVIELNQGIDQALIIKVGNIPKFIGQPGKMNKKMA 317
Query: 298 IRITDRINFDQK 309
++I D + +
Sbjct: 318 VQILDTVKGGDE 329
>gi|170698080|ref|ZP_02889161.1| flagellar motor switch protein FliM [Burkholderia ambifaria
IOP40-10]
gi|170137041|gb|EDT05288.1| flagellar motor switch protein FliM [Burkholderia ambifaria
IOP40-10]
Length = 332
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
P + R+ + + + L M +IS + +
Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S + + + NLV +++NL G ++ R
Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + + + + NE V +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + + +P + + S Q ++ + +++ V + +
Sbjct: 205 IEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+T + ++ L+ G V+P + +G + C G Y +R+ I+
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322
Query: 307 DQKS 310
Sbjct: 323 SDTM 326
>gi|171316890|ref|ZP_02906099.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5]
gi|171097971|gb|EDT42789.1| flagellar motor switch protein FliM [Burkholderia ambifaria MEX-5]
Length = 332
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 88/304 (28%), Gaps = 11/304 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
P + R+ + + + L M +IS + +
Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S + + + NLV +++NL G ++ R
Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + + + + NE V +
Sbjct: 147 TATEQRIIGKLLNLVFEHYATAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + + +P + + S Q ++ + +++ V + +
Sbjct: 205 IEFGPTGGTLHICMPYSMVEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELSANL 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+T + ++ L+ G V+P + +G + C G Y +R+ I+
Sbjct: 265 AEIPSTFEKILNLRAGDVLPLE--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISA 322
Query: 307 DQKS 310
Sbjct: 323 SDTM 326
>gi|167585018|ref|ZP_02377406.1| flagellar motor switch protein FliM [Burkholderia ubonensis Bu]
Length = 332
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 34/303 (11%), Positives = 88/303 (29%), Gaps = 11/303 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P + R+ + + + L M +IS + +
Sbjct: 34 GIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKVQ 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S + + + NLV +++NL G ++ R +
Sbjct: 88 KYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFT 147
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + + + + + NE V ++
Sbjct: 148 ATEQRIIGKMLNLVFEHYTTAWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIVTQFSI 205
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + +P + + S Q ++ + +++ V + +
Sbjct: 206 EFGPTGGTLHICMPYSMVEPIRDVLASPIQGEALEVDRRWVRVLSQQVQTAEVEVTANLA 265
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
T + ++ L+ G V+P + +G + C G Y +R+ I+ +
Sbjct: 266 EIPVTFEQILNLRAGDVLPLA--IEDTITAKVDGVPVMECGYGIFNGQYALRVQKMISAN 323
Query: 308 QKS 310
Sbjct: 324 DTM 326
>gi|289670556|ref|ZP_06491631.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 337
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ TL+ + LK+G V+P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|325928696|ref|ZP_08189868.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
gi|325540928|gb|EGD12498.1| flagellar motor switch protein FliM [Xanthomonas perforans 91-118]
Length = 337
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|289208344|ref|YP_003460410.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
gi|288943975|gb|ADC71674.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. K90mix]
Length = 324
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 86/299 (28%), Gaps = 11/299 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ R+ + + + L + ++S +
Sbjct: 33 DGEAREFNFATQDRIVRG------RMPTLEMINERFARHLRVRLFNMLRRSAELSVVGTR 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KFS +HS + LV L++N G ++ R
Sbjct: 87 VSKFSEYMHSLFVPTSLNLVRAHPLHGTGLFVFDPKLVFILVDNFFGGDGRYHTRIEGRD 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E ++ + + + + E + E V
Sbjct: 147 FTPMEMRVVHGILEGAFEDMVKAWQPVMDL--RFEFLNSEVNPQFANIVSPTEIVVISEF 204
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ ++ + +P + + Q+ + + + + V + +
Sbjct: 205 HIELDGGGGNLHFTLPYSMIEPIREQLDTGLQSDRSDVDQRWMKALEEEIQDAEVEVSST 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + T+++++ ++ G +IP L ++ + G I++TDRI
Sbjct: 265 LTETEVTVQELLDIQPGDIIPINLP--ETVTLKVEDIPLFRGKFGVSDGKNAIQVTDRI 321
>gi|21242691|ref|NP_642273.1| flagellar motor switch protein FliM [Xanthomonas axonopodis pv.
citri str. 306]
gi|294664066|ref|ZP_06729468.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|21108164|gb|AAM36809.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|292606169|gb|EFF49418.1| flagellar motor switch protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 337
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|209695733|ref|YP_002263663.1| flagellar motor switch protein FliM [Aliivibrio salmonicida
LFI1238]
gi|208009686|emb|CAQ79985.1| polar flagellar switch protein FliM (flagellar motor switch protein
FliM) [Aliivibrio salmonicida LFI1238]
Length = 343
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 87/297 (29%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVSMVKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKVVFEDYKEAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F ++ P + + + Q+ + + + V + + +
Sbjct: 209 GGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESEI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+L+D++ L+ G +IP A + Y ++G+ G ++IT++I
Sbjct: 269 SLRDLMDLQAGDIIPIEMP--EAATVFVEDLPTYRGKVGKSGDKLAVQITEKIKRPD 323
>gi|212639555|ref|YP_002316075.1| flagellar motor switch protein FliM [Anoxybacillus flavithermus
WK1]
gi|212561035|gb|ACJ34090.1| Flagellar motor switch protein FliM [Anoxybacillus flavithermus
WK1]
Length = 335
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 104/284 (36%), Gaps = 7/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V IS S + I S + + +
Sbjct: 52 SKDQIRSLTRMHENFARLLTTFFSAQLRTYVQISVASADQLPYEEFIRSIPKMTILTVFE 111
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + N+ +L+ +LG ++ ++ N L+ +E K+ + + L
Sbjct: 112 VPPLDGRVLLEVNPNIAYAMLDRVLGGRGVSLNKIEN--LTEIETKIMSNLFEKAFSNLR 169
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P L DF + NE V I++N I + + + IP L
Sbjct: 170 EAWESVADIDPMLTDFEV--NPQFLQMVSPNETVVVISLNTQIGDTSGMINICIPHVVLE 227
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q + + + + + ++ Q V + + ++++ + L +G V
Sbjct: 228 PIIPKLSVHYWMQTQKKAREPEEVATLQKRLKQTKVPMIAELGTSTISIQEFLQLSVGDV 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
I + ++ + + G++ K I+I D I +
Sbjct: 288 IQLDQTVRDPLVIKVGDVPKFIGQPGKMNKRLAIQILDVIKGED 331
>gi|209522293|ref|ZP_03270920.1| flagellar motor switch protein FliM [Burkholderia sp. H160]
gi|209497269|gb|EDZ97497.1| flagellar motor switch protein FliM [Burkholderia sp. H160]
Length = 332
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 36/310 (11%), Positives = 88/310 (28%), Gaps = 11/310 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
QS P + R+ + + + L M +IS
Sbjct: 27 SEQSDRSGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEIS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ K+S + + + NLV +++NL G +
Sbjct: 81 VGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTR 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ + + + + + NE V
Sbjct: 141 VEGRDFTQTEQRIIMKLLNLTFEHYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIV 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
++ + + + +P + I S Q ++ + + +++ V
Sbjct: 199 IVTQFSIEFGSTGGTLHICMPYSMIEPIRDILSSPIQGEAMDVDRRWVRVLSQQVQAAEV 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 259 QLTADLAQVPVTFEQILNMRKGDVLPINIP--ERITAKVDGVPVMECGYGIFNGQYALRV 316
Query: 301 TDRINFDQKS 310
I+
Sbjct: 317 QKMISAADTM 326
>gi|53717666|ref|YP_106652.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
K96243]
gi|76811753|ref|YP_331656.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1710b]
gi|126441392|ref|YP_001057084.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668]
gi|126453439|ref|YP_001064314.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1106a]
gi|134281495|ref|ZP_01768203.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305]
gi|167717395|ref|ZP_02400631.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
DM98]
gi|167736438|ref|ZP_02409212.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 14]
gi|167813512|ref|ZP_02445192.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 91]
gi|167822054|ref|ZP_02453525.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 9]
gi|167843667|ref|ZP_02469175.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
B7210]
gi|167892138|ref|ZP_02479540.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
7894]
gi|167900650|ref|ZP_02487855.1| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC
13177]
gi|167908870|ref|ZP_02495961.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 112]
gi|167916909|ref|ZP_02504000.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
BCC215]
gi|217424100|ref|ZP_03455600.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576]
gi|226193119|ref|ZP_03788729.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
Pakistan 9]
gi|237814422|ref|YP_002898873.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
MSHR346]
gi|242315986|ref|ZP_04815002.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1106b]
gi|254184092|ref|ZP_04890683.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1655]
gi|254186558|ref|ZP_04893075.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
Pasteur 52237]
gi|254194648|ref|ZP_04901079.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13]
gi|254258129|ref|ZP_04949183.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1710a]
gi|254298640|ref|ZP_04966091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
406e]
gi|52208080|emb|CAH34010.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
K96243]
gi|76581206|gb|ABA50681.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1710b]
gi|126220885|gb|ABN84391.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 668]
gi|126227081|gb|ABN90621.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1106a]
gi|134247162|gb|EBA47248.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 305]
gi|157808681|gb|EDO85851.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
406e]
gi|157934243|gb|EDO89913.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
Pasteur 52237]
gi|169651398|gb|EDS84091.1| flagellar motor switch protein FliM [Burkholderia pseudomallei S13]
gi|184214624|gb|EDU11667.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1655]
gi|217393163|gb|EEC33185.1| flagellar motor switch protein FliM [Burkholderia pseudomallei 576]
gi|225934719|gb|EEH30696.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
Pakistan 9]
gi|237504112|gb|ACQ96430.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
MSHR346]
gi|242139225|gb|EES25627.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1106b]
gi|254216818|gb|EET06202.1| flagellar motor switch protein FliM [Burkholderia pseudomallei
1710a]
Length = 332
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L M +IS +
Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + NLV +++NL G ++
Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + + + NE V
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
++ + + +P + + S Q ++ + +++ V +
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ TT + ++ L+ G V+P +G + C G Y +R+
Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319
Query: 304 INFDQKS 310
I+
Sbjct: 320 ISASDTM 326
>gi|315127312|ref|YP_004069315.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
gi|315015826|gb|ADT69164.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
Length = 363
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 97/314 (30%), Gaps = 11/314 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G+ +T R+ + + + + M ++S
Sbjct: 27 DGEDGEGSTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
Q KF IH+ + I LV L++N G +
Sbjct: 81 INGVQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAK 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ + + I + + + + E E V
Sbjct: 141 IEGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVV 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
+ ++ ++ F + +P L + + Q+ +E+ + + V
Sbjct: 199 VISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEV 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
++ T++ +LK ++ LK G +IP + + ++GR N ++I
Sbjct: 259 DLSTQLLEVDLSLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNVALQI 316
Query: 301 TDRINFDQKSLKNF 314
+++I
Sbjct: 317 SEKIKRPDSVKSEL 330
>gi|78047547|ref|YP_363722.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78035977|emb|CAJ23668.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 337
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEDIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|307731349|ref|YP_003908573.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003]
gi|307585884|gb|ADN59282.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1003]
Length = 332
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS P + R+ + + + L M +IS
Sbjct: 29 QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S + + + NLV +++NL G ++
Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + + NE V
Sbjct: 143 GREFTQTEQRIISKLLNLVFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + +P + I S Q ++ + +++ V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQSAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EQITAKVDGVPVMECGYGIFNGQYALRVQR 318
Query: 303 RINFDQKS 310
I+
Sbjct: 319 MISAADTM 326
>gi|56460301|ref|YP_155582.1| flagellar motor switch protein FliM [Idiomarina loihiensis L2TR]
gi|56179311|gb|AAV82033.1| Flagellar motor switch protein [Idiomarina loihiensis L2TR]
Length = 356
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 36/306 (11%), Positives = 96/306 (31%), Gaps = 11/306 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+S + R+ + + + + M ++S
Sbjct: 30 ESASADALDYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRTAEVSIN 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF +H+ + I LV L++N G ++
Sbjct: 84 GVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIE 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + + E E +
Sbjct: 144 GREFTPTERRIIQMLLKLVFEDYKEAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIVI 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+ ++ ++ F + +P L + + Q+ E+ + + V +
Sbjct: 202 SSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVEM 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ + +L++V+ L+ G VIP + + + ++GR N ++I++
Sbjct: 262 IAKLAQTEMSLREVMDLREGDVIPLELPDD--LTVLIEDLPTFHAKMGRSRDNVALKISE 319
Query: 303 RINFDQ 308
+I +
Sbjct: 320 KIKRPE 325
>gi|187925747|ref|YP_001897389.1| flagellar motor switch protein FliM [Burkholderia phytofirmans
PsJN]
gi|187716941|gb|ACD18165.1| flagellar motor switch protein FliM [Burkholderia phytofirmans
PsJN]
Length = 332
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 88/308 (28%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS P + R+ + + + L M +IS
Sbjct: 29 QSDRVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S + + + NLV +++NL G ++
Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + + NE V
Sbjct: 143 GRDFTQTEQRIINKLLNLVFDNYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIVIV 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + +P + I S Q ++ + +++ V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 261 TADLAQVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318
Query: 303 RINFDQKS 310
I+ +
Sbjct: 319 MISAAETM 326
>gi|289666107|ref|ZP_06487688.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 337
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ TL+ + LK+G V+P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMTLRQLTGLKVGDVLPIELPAQVP--LCVEDIPLFTGEFGISNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|77359748|ref|YP_339323.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
TAC125]
gi|76874659|emb|CAI85880.1| flagellar biosynthesis; component of motor switch and energizing
[Pseudoalteromonas haloplanktis TAC125]
Length = 363
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 41/313 (13%), Positives = 96/313 (30%), Gaps = 11/313 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G+ NT R+ + + + + M ++S
Sbjct: 28 GEDGEGNTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSI 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +H+ + I LV L++N G ++
Sbjct: 82 NGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKI 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + I + + + + E E V
Sbjct: 142 EGREFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVV 199
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ +E+ + + V
Sbjct: 200 ISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVE 259
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++ TLK ++ LK G +IP + + ++GR + ++I+
Sbjct: 260 LSTQLLEVDLTLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDSVALQIS 317
Query: 302 DRINFDQKSLKNF 314
++I
Sbjct: 318 EKIKRPDSVKSEL 330
>gi|88858101|ref|ZP_01132743.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
gi|88819718|gb|EAR29531.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
Length = 364
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 41/300 (13%), Positives = 94/300 (31%), Gaps = 11/300 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
S R+ + + + + M ++S Q K
Sbjct: 36 ASQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMIK 89
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
F IH+ + I LV L++N G ++ R +
Sbjct: 90 FGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTP 149
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E+++ + + I + + + + E E V + ++
Sbjct: 150 TERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHIE 207
Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
++ F + +P L + + Q+ +E+ + + V + TR+
Sbjct: 208 LDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVGLSTRMLE 267
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
K +L+ ++ L+ G VIP + + ++GR N ++I+++I
Sbjct: 268 VKLSLEQIMNLQAGDVIPVEMP--EHITVFIEDLPTFRAKMGRSRDNVALQISEKIKRPD 325
>gi|89098632|ref|ZP_01171514.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
gi|89086594|gb|EAR65713.1| flagellar motor switch protein M [Bacillus sp. NRRL B-14911]
Length = 332
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 45/311 (14%), Positives = 101/311 (32%), Gaps = 13/311 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + + L F ++ V I
Sbjct: 28 LKKEQSEKKVKVYDFKRALRF------SKDQVRSLTRIHENFARLLTTFFSAQLRTYVQI 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + I S + + + + + + N+ +++ ++G +I
Sbjct: 82 SVASADQIPYEEFIRSIPKMTILNVFEVPPLDGRILMEVNPNIAYAMMDRMMGGRGSSIN 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ L+ +E K+ T + L + ST E P L + NE
Sbjct: 142 KVDT--LTEIETKIMSNTFERAFEHLREAWSTITEIDPFL--AEFEINPQFLQMVSPNET 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I++N I + + IP L Q + + + + + +
Sbjct: 198 VVVISLNTMIGETSGMINICIPHVVLEPIIPKLSVHYWMQTEKKEREPEELGRLEDSIQK 257
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + +++D + L +G VI + ++ + G+ K
Sbjct: 258 AQVPVSAELGSADISIQDFLMLDLGDVIELNQAIDRPLTIKIGDIPKFTGQPGKANKKLA 317
Query: 298 IRITDRINFDQ 308
I+I D +
Sbjct: 318 IQILDTLKGGD 328
>gi|296133037|ref|YP_003640284.1| flagellar motor switch protein FliM [Thermincola sp. JR]
gi|296031615|gb|ADG82383.1| flagellar motor switch protein FliM [Thermincola potens JR]
Length = 333
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 42/285 (14%), Positives = 98/285 (34%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K ++ + + L + V ++ S + + I S + +
Sbjct: 50 SKEQIHTLQAIHENFARLLATFLSAHLRTVVTMNVHSVEQITYDEFIRSLPNPTLLNIFM 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + N + + N+ T+L+ L G + ++ R L+ +E+ + ++ I + +L
Sbjct: 110 MEPLAGNAILEVNPNVTFTILDRLFGGPGQAPEKM--RGLTDIERTVIEKVIIRCLQILK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ P LE E V I+++ TI + L IP L
Sbjct: 168 EAWENIIVFDPKLEIIET--NPMFTQIVSPTEMVVLISIHATIGDNEGIMNLCIPFIVLE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
++ + + I R+ + + + + L +++ L+ G V
Sbjct: 226 PIISKLTAHFWFAGTAKTVTAEHIQNTQRRLEKAKITLSAVLGETTIKLGELLELQPGDV 285
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I +R + ++ + G VG ++IT + +
Sbjct: 286 IQLDNRTTDELKILVGDRKKFYGRPGTVGSRLAVQITRLVKEGDE 330
>gi|319787093|ref|YP_004146568.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis
11-1]
gi|317465605|gb|ADV27337.1| flagellar motor switch protein FliM [Pseudoxanthomonas suwonensis
11-1]
Length = 339
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 35/301 (11%), Positives = 86/301 (28%), Gaps = 11/301 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
P R+ + + + + DIS K
Sbjct: 36 ARPYDFASQDRIIRG------RMPTLEMVNERFARLWRIGLFNLIRRSADISVRGIDMIK 89
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
F +HS + + LV +++N G ++ R +
Sbjct: 90 FGEYMHSLYVPTNLNLVRFKPLRGMGLVVFEPKLVFAVVDNFFGGDGRYPTRIEGREFTV 149
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E ++ + + Q A L + + + E E+V ++
Sbjct: 150 TEMRVIQLMLRQTFADLVEAWAPVMDVE--FEYINSEINPHFANIVTPREYVVVSRFHVE 207
Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
++ + +P L + + Q+ ++ E + V + + +
Sbjct: 208 LDGGGGEIHVTLPYSMLEPIRELLDAGIQSDRIDRDESWNTTLREQLQLAEVTVSSVLAQ 267
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
K+ L+ + LK+G ++P + +++ + G ++IT
Sbjct: 268 KRIDLRQLTRLKVGDILPIDLST--TVPVCVENIPVFTGQFGVSNGCNAVKITRTHPPGS 325
Query: 309 K 309
+
Sbjct: 326 E 326
>gi|73539704|ref|YP_300071.1| flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
gi|72123041|gb|AAZ65227.1| Flagellar motor switch protein FliM [Ralstonia eutropha JMP134]
Length = 337
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 10/302 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P + R+ + + + L + DI+ S +
Sbjct: 36 EGGVRPYNLATQERVIRG------RLHTLEIINERFARSLRTALFNFIRRGADITVGSVR 89
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + + + NLV +++NL G ++ R
Sbjct: 90 IEKFGDFARNLPMPTNLNLVHMKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 149
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + T K NE V T
Sbjct: 150 FTQTEQRIIQRMLEMTLTSYGNAWRTVYPIETEYVRSEMHT--KFANVATVNEAVITTAF 207
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
++ + V + +P + + ++ + + + + + +V +
Sbjct: 208 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKSWLAKLSTQLRAADVEVVAEF 267
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++T+ +V+ L+ G V+P NG + C G + Y +R+ IN
Sbjct: 268 THVQSTVAEVLALRAGDVLPIELP--EHVFGKVNGVPVMQCGFGTINGQYALRVERMINH 325
Query: 307 DQ 308
Sbjct: 326 QD 327
>gi|116694517|ref|YP_728728.1| flagellar motor switch protein [Ralstonia eutropha H16]
gi|113529016|emb|CAJ95363.1| flagellar motor switch protein [Ralstonia eutropha H16]
Length = 339
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 10/302 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P + R+ + + + + + DI+ S +
Sbjct: 35 EGGVRPYNLATQERIIRG------RLHTLEIINERFARSMRTALFNFIRRGADITVGSIR 88
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + + L NLV +++NL G ++ R
Sbjct: 89 IEKFGDFARNLPMPTNLNLVHLKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEGRD 148
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + A T E + K NE V T
Sbjct: 149 FTQTEQRIIQRMLELTLASYGNAWRTVHPIE--TEYIRSEMHPKFANVATHNEAVVTTAF 206
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
++ + V + +P + + ++ + + + + + V +
Sbjct: 207 HIELGAVGGQLHVCLPYAMIEPLKDLLMNPLQDEKEVDKGWVTQLSTQLRAAEVELVAEF 266
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++T+ +V+ ++ G V+P +G + C G + Y +R+ IN
Sbjct: 267 AHLQSTVAEVLAMRAGDVLPIELP--EKVFGKVDGVPVMQCGFGTMNGQYALRVERMINH 324
Query: 307 DQ 308
Sbjct: 325 QD 326
>gi|53723902|ref|YP_104282.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
23344]
gi|67641904|ref|ZP_00440669.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse
4]
gi|121600665|ref|YP_994775.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1]
gi|124385588|ref|YP_001027842.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
10229]
gi|126451066|ref|YP_001082210.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
10247]
gi|167000456|ref|ZP_02266270.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20]
gi|254174753|ref|ZP_04881414.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
10399]
gi|254201359|ref|ZP_04907723.1| flagellar motor switch protein FliM [Burkholderia mallei FMH]
gi|254206701|ref|ZP_04913052.1| flagellar motor switch protein FliM [Burkholderia mallei JHU]
gi|254357364|ref|ZP_04973638.1| flagellar motor switch protein FliM [Burkholderia mallei
2002721280]
gi|52427325|gb|AAU47918.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
23344]
gi|121229475|gb|ABM51993.1| flagellar motor switch protein FliM [Burkholderia mallei SAVP1]
gi|124293608|gb|ABN02877.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
10229]
gi|126243936|gb|ABO07029.1| flagellar motor switch protein FliM [Burkholderia mallei NCTC
10247]
gi|147747253|gb|EDK54329.1| flagellar motor switch protein FliM [Burkholderia mallei FMH]
gi|147752243|gb|EDK59309.1| flagellar motor switch protein FliM [Burkholderia mallei JHU]
gi|148026428|gb|EDK84513.1| flagellar motor switch protein FliM [Burkholderia mallei
2002721280]
gi|160695798|gb|EDP85768.1| flagellar motor switch protein FliM [Burkholderia mallei ATCC
10399]
gi|238522917|gb|EEP86359.1| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse
4]
gi|243063644|gb|EES45830.1| flagellar motor switch protein FliM [Burkholderia mallei PRL-20]
Length = 332
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L M +IS +
Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + NLV +++NL G ++
Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + + + NE V
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIAT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
++ + + +P + + S Q ++ + +++ V +
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ TT + ++ L+ G V+P +G + C G Y +R+
Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319
Query: 304 INFDQKS 310
I+
Sbjct: 320 ISASDTM 326
>gi|325917742|ref|ZP_08179929.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
35937]
gi|325536041|gb|EGD07850.1| flagellar motor switch protein FliM [Xanthomonas vesicatoria ATCC
35937]
Length = 337
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + E E E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMEVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLNTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPMFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|34498585|ref|NP_902800.1| flagellar motor switch protein FliM [Chromobacterium violaceum ATCC
12472]
gi|34104439|gb|AAQ60797.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
Length = 334
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ R+ + + + L + + +IS +
Sbjct: 32 QGVRGYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFLRRNAEISVGPVRV 85
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S I + + + + +LV +++NL G+ ++ R
Sbjct: 86 QKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIFDPDLVFLIVDNLFGSDGRYHVRVEGRDF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ R + + + + E V + +
Sbjct: 146 TPTEQRIIHRLLEVVFTECQKAWEPVYPIE--FVYLRSEMNTQFANIATPTEVVVAMTFH 203
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + F + +P + + S Q ++ + V + +
Sbjct: 204 IELGAGGGDFHICLPYSMVEPIRDLLSSTMQADRTEVDNRWVNLMTHQVQAAEVELVASL 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
K TL ++ LK G V+ +G ++ G V Y +++ +
Sbjct: 264 AHAKVTLGQILNLKNGDVVMIEIP--ERVEADVSGIPVFEASYGTVQGRYALKVEKILAG 321
Query: 307 DQKSLKN 313
+ L++
Sbjct: 322 TNEFLES 328
>gi|160896094|ref|YP_001561676.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
gi|160361678|gb|ABX33291.1| flagellar motor switch protein FliM [Delftia acidovorans SPH-1]
Length = 334
Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats.
Identities = 40/311 (12%), Positives = 102/311 (32%), Gaps = 7/311 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+ G+S T + ++ + ++ + + + + +
Sbjct: 18 VTGESQKSTTEEVEAGIIRQYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
++S + ++S + F+ ++ + + C +LV +++ L G +
Sbjct: 78 EVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRL 137
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R S E+++ R + I + L + +
Sbjct: 138 QTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLE--LGYQRSEMQPQFANIATPS 195
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237
E V + + I +++ S + +P TL + S+Q S + R+
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQA 255
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + T++ ++ ++ G I S G I+ C+ G Y
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPIFECQYGTHNDKYA 313
Query: 298 IRITDRINFDQ 308
IR+ + +
Sbjct: 314 IRVENCLRGAD 324
>gi|170694407|ref|ZP_02885561.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M]
gi|170140830|gb|EDT09004.1| flagellar motor switch protein FliM [Burkholderia graminis C4D1M]
Length = 332
Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS P + R+ + + + L M +IS
Sbjct: 29 QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S + + + NLV +++NL G ++
Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + NE V
Sbjct: 143 GRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + +P + I S Q ++ + +++ V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRVQK 318
Query: 303 RINFDQKS 310
I+
Sbjct: 319 MISAADTM 326
>gi|166712025|ref|ZP_02243232.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 337
Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEASQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + LE E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--LEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|300113610|ref|YP_003760185.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113]
gi|299539547|gb|ADJ27864.1| flagellar motor switch protein FliM [Nitrosococcus watsonii C-113]
Length = 336
Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats.
Identities = 40/309 (12%), Positives = 93/309 (30%), Gaps = 11/309 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
K P R+ + + + + + + +++ Q
Sbjct: 34 EKTIRPYDFSSEDRI------ARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQ 87
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KFS +H+ + + LV L++ G S E +L NR
Sbjct: 88 VLKFSEYLHTLFMPTSLNLVQIHPLRGAGLFVFDPKLVFMLVDRYFGGSGEFYNRLENRE 147
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E + + + + L Q + E + T +E V
Sbjct: 148 FTPTEMHIIQLVLERTFTDLKQAWEPVLAIN--FEYLQTEFNPRLATIASPSEIVVVSTF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
++ E F + +P L + + + + V +
Sbjct: 206 HVEFEGGGGEFHIALPYTLLEPVRELLDTGKKDDFTQADGGWNQALRKNVSDAEVELSCT 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+V+ LK G ++P + A+G ++ G + +++ +R+
Sbjct: 266 LTEIRLSLKEVLALKSGDILPIELP--STVTALADGVPVFRVRYGIHNSSRALKVVERLL 323
Query: 306 FDQKSLKNF 314
+ +
Sbjct: 324 SPESFTEKL 332
>gi|145298353|ref|YP_001141194.1| flagellar motor switch protein FliM [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851125|gb|ABO89446.1| Flagellar motor switch protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 356
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 38/307 (12%), Positives = 94/307 (30%), Gaps = 11/307 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + R+ + + + + M ++S
Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +H+ + I LV L+EN G ++
Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + + + + E E +
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ + + + V
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ ++ TL++++ LK G +IP E ++ + ++GR N ++IT
Sbjct: 258 LRAKLLETDLTLRELMELKPGDIIPVEMPEN--LLVYVEDLPTFHAKMGRTKDNVALKIT 315
Query: 302 DRINFDQ 308
D++ +
Sbjct: 316 DKLKRPE 322
>gi|332533119|ref|ZP_08408988.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037401|gb|EGI73855.1| flagellar motor switch protein FliM [Pseudoalteromonas haloplanktis
ANT/505]
Length = 363
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 41/307 (13%), Positives = 95/307 (30%), Gaps = 11/307 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+T R+ + + + + M ++S Q
Sbjct: 34 STLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVSINGVQMI 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF IH+ + I LV L++N G ++ R +
Sbjct: 88 KFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFT 147
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + + E E V + ++
Sbjct: 148 PTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHI 205
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P L + + Q+ +E+ + + V++ T++
Sbjct: 206 ELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIMDVEVDMSTQLL 265
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
TLK ++ LK G +IP + + ++GR N ++I+++I
Sbjct: 266 EVDLTLKQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNVALQISEKIKRP 323
Query: 308 QKSLKNF 314
Sbjct: 324 DSVKSEL 330
>gi|94314217|ref|YP_587426.1| flagellar motor switch protein FliM [Cupriavidus metallidurans
CH34]
gi|93358069|gb|ABF12157.1| flagellar motor switch protein FliM [Cupriavidus metallidurans
CH34]
Length = 336
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 10/304 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L + DIS +
Sbjct: 33 ADDGGVRPYNLANQERIVRG------RLHTLEIINERFARALRTALFNFIRRGADISVGT 86
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+ + + + + NLV +++NL G ++
Sbjct: 87 VRIEKYGDFVRNLPVPTNLNLVHMKPLRGTALFVYDPNLVFLVVDNLFGGDGRFHTRVEG 146
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + Q T + K N+ V T
Sbjct: 147 RDFTQTEQRIIRRMLDLTLSSYGQAWRTVHPIEFDYVRSEMHT--KFANVAGPNDAVVTT 204
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ + V + IP + + ++ + + + + V +
Sbjct: 205 AFHIELGAVGGQLHICIPFSMIEPLRDLLMNPLQDEVEVDKRWLGQLSNQLRAAEVELVA 264
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++T+ +V+ ++ G V+P NG + C G + Y +R+ +
Sbjct: 265 EFTHLRSTVAEVLAMREGDVLPIELP--EHIFGKVNGVPVMQCGFGTMNGQYALRVERML 322
Query: 305 NFDQ 308
N+
Sbjct: 323 NYQD 326
>gi|330828806|ref|YP_004391758.1| flagellar motor switch protein FliM [Aeromonas veronii B565]
gi|328803942|gb|AEB49141.1| Flagellar motor switch protein FliM [Aeromonas veronii B565]
Length = 356
Score = 251 bits (642), Expect = 7e-65, Method: Composition-based stats.
Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + R+ + + + + M ++S
Sbjct: 26 GGAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +H+ + I LV L+EN G ++
Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + + + + E E +
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ + + + V
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ ++ + TL++++ L+ G +IP E ++ + ++GR N ++IT
Sbjct: 258 LRAKLLETELTLRELMELRPGDIIPVDMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315
Query: 302 DRINFDQ 308
D++ +
Sbjct: 316 DKLKRPE 322
>gi|161523223|ref|YP_001578235.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
17616]
gi|189348920|ref|YP_001944548.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
17616]
gi|221201776|ref|ZP_03574813.1| flagellar motor switch protein FliM [Burkholderia multivorans
CGD2M]
gi|221207719|ref|ZP_03580727.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2]
gi|221214537|ref|ZP_03587507.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1]
gi|160340652|gb|ABX13738.1| flagellar motor switch protein FliM [Burkholderia multivorans ATCC
17616]
gi|189332942|dbj|BAG42012.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221165427|gb|EED97903.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD1]
gi|221172565|gb|EEE05004.1| flagellar motor switch protein FliM [Burkholderia multivorans CGD2]
gi|221178196|gb|EEE10606.1| flagellar motor switch protein FliM [Burkholderia multivorans
CGD2M]
Length = 332
Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 87/303 (28%), Gaps = 11/303 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P + R+ + + + L M +IS + +
Sbjct: 34 GVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKVQ 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+S + + + NLV +++NL G ++ R +
Sbjct: 88 KYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDFT 147
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + + + + + NE V ++
Sbjct: 148 ATEQRIIGKLLNLVFEHYTVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFSI 205
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + +P + + S Q ++ + +++ V + +
Sbjct: 206 EFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVELTADLA 265
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
TT + ++ L+ G V+P +G + C G Y +R+ I+
Sbjct: 266 EIPTTFEKILNLRAGDVLPLD--IADTITAKVDGVPVMECGYGIFNGQYALRVQKMISAS 323
Query: 308 QKS 310
Sbjct: 324 DTM 326
>gi|323527699|ref|YP_004229852.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001]
gi|323384701|gb|ADX56792.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1001]
Length = 332
Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS P + R+ + + + L M +IS
Sbjct: 29 QSERVGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S + + + NLV +++NL G ++
Sbjct: 83 PVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + + NE V
Sbjct: 143 GRDFTQTEQRIIMKLLNLTFEHYAASWKSVRPLQFEYMRSEMHT--QFANVATPNEIVIV 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + +P + I S Q ++ + +++ V +
Sbjct: 201 TQFSIEFGTTGGTLHICMPYSMIEPIRDILSSPIQGEALEVDRRWVRVLSQQVQAAEVEL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 261 TADLAQVPITFEQILNMRKGDVLPINIP--EQITAKVDGVPVMECGYGIFNGQYALRVQK 318
Query: 303 RINFDQKS 310
I+
Sbjct: 319 MISAADTM 326
>gi|296135698|ref|YP_003642940.1| flagellar motor switch protein FliM [Thiomonas intermedia K12]
gi|294339869|emb|CAZ88232.1| Flagellar motor switch [Thiomonas sp. 3As]
gi|295795820|gb|ADG30610.1| flagellar motor switch protein FliM [Thiomonas intermedia K12]
Length = 336
Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 90/304 (29%), Gaps = 11/304 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P R+ + + + + +IS +S
Sbjct: 30 ADEGGVRPYDLASQDRIVRG------RMPTLEVINERFARLWRVSLFNFLRRASEISVSS 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K++ I + + L+ ++++N G ++
Sbjct: 84 VKLTKYNEFIRGLVVPSNLNLVQMKPLRGTALFIFDPRLIFSVIDNFFGGDGRFHARIEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + +E+++ KR + + + P L + E V
Sbjct: 144 RDFTPLEQRIIKRMLDMVFKEYKTAWAPVLPLEPELTRSEV--NPQFVNIATPTEVVIVS 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNID 243
++ IE S + IP + + + + + V +
Sbjct: 202 TFDVEIEGGGGSLHVCIPYSMVEPIRDQLTTGMTTDRSEVDHRWVKALQTEMREAEVEMR 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ ++ +++++ L++G V+P I +G + E GR ++I +
Sbjct: 262 VELLQRQILVRELLNLRVGDVLPVDMP--ETVIARVDGIPVLLGEYGRHEDKMALKIRQQ 319
Query: 304 INFD 307
+ +
Sbjct: 320 LFPE 323
>gi|124516745|gb|EAY58253.1| Flagellar motor switch protein FliM [Leptospirillum rubarum]
Length = 338
Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 3/304 (0%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ K P+ L + + + + +F + V+ S
Sbjct: 24 ETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINERFARFFQVTLSATLRKTVEFSPQ 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ KF + + L S N + +V L++++ G S ++
Sbjct: 84 GIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIIDARMVYLLVDHMFGGSGRGHVKIE 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R S +E ++++ + + + + + E V T
Sbjct: 144 GRDFSPIEARISRNVMDLAIGDFEKAWAPVHPM--PITYIRSEINPQFAAIVAPTEMVVT 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ + I+ + + IP T+ Q+ I+ + + + I
Sbjct: 202 MAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQYEVDSRWINRLQERVEEAPLEI 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ I + TL+D++ K G V + G + G + IRI
Sbjct: 262 EAFIGETRFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLARPGIFRHHRAIRIER 321
Query: 303 RINF 306
R+
Sbjct: 322 RVPP 325
>gi|325920567|ref|ZP_08182489.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
19865]
gi|325548960|gb|EGD19892.1| flagellar motor switch protein FliM [Xanthomonas gardneri ATCC
19865]
Length = 337
Score = 251 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + E E E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMEVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|295678044|ref|YP_003606568.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002]
gi|295437887|gb|ADG17057.1| flagellar motor switch protein FliM [Burkholderia sp. CCGE1002]
Length = 332
Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats.
Identities = 34/310 (10%), Positives = 88/310 (28%), Gaps = 11/310 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
Q+ P + R+ + + + L M +IS
Sbjct: 27 SEQNDRTGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRSAEIS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ K+S + + + NLV +++NL G +
Sbjct: 81 VGPVKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTR 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ + + + + + NE V
Sbjct: 141 VEGRDFTQTEQRIITKLLNLTFEHYTASWKSVRPLQFEYVRSEMHT--QFANVATPNEIV 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
++ + + + +P + + S Q ++ + + +++ V
Sbjct: 199 IVTQFSIEFGSTGGTLHICMPYSMIEPIRDVLSSPIQGEAMDVDRRWVRVLSQQVQAAEV 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T + ++ ++ G V+P +G + C G Y +R+
Sbjct: 259 QLTADLAQVPVTFEQILNMRKGDVLPINIP--EHITAKVDGVPVMECGYGIFNGQYALRV 316
Query: 301 TDRINFDQKS 310
I+
Sbjct: 317 QKMISAADTM 326
>gi|220934501|ref|YP_002513400.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
gi|219995811|gb|ACL72413.1| flagellar motor switch protein FliM [Thioalkalivibrio sp. HL-EbGR7]
Length = 326
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 11/306 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q+ R+ + + + + + +IS
Sbjct: 31 QAHDGVARGYDFTSQDRIVRG------RMPTLEMINERFARQMRISLFNLLRRSAEISVG 84
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ KFS +H+ + + LV L++N G ++
Sbjct: 85 GIKMTKFSEYVHTLFVPTSLNMVKIKPLRGTALFVVDPKLVFILVDNFFGGDGRYHAKIE 144
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + T+ Q L + + + E + E V
Sbjct: 145 GREFTPTELRVIRMTLDQAFTDLKKAWAPVMDLD--FEYINSEVNPQFANIVSPTEVVCV 202
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+ ++ ++ + +P + + + Q+ + E I + V +
Sbjct: 203 SSFHIELDGGGGDLHVTMPYSMIEPMRELLDAGIQSDRSDVDERWIRALRDEVKAAEVEL 262
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + +L+DV+ LK G +IP +L A G + + G I++T+
Sbjct: 263 SSMLTETTLSLEDVMRLKPGDIIPIDLP--EQVLLRAEGIPVLRGKFGVSDGYNAIKVTE 320
Query: 303 RINFDQ 308
RI
Sbjct: 321 RIRRAD 326
>gi|167560937|ref|ZP_02353853.1| flagellar motor switch protein FliM [Burkholderia oklahomensis
EO147]
gi|167568197|ref|ZP_02361071.1| flagellar motor switch protein FliM [Burkholderia oklahomensis
C6786]
Length = 332
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L M +IS +
Sbjct: 30 AEASGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + NLV +++NL G ++
Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + + + + NE V
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYSVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
++ + + +P + + S Q ++ + +++ V +
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ TT + ++ L+ G V+P +G + C G Y +R+
Sbjct: 262 ADLAEIPTTFEKILNLRAGDVLPLD--IAETLTAKVDGVPVMECGYGIFNGQYALRVQKM 319
Query: 304 INFDQKS 310
++
Sbjct: 320 VSASDTM 326
>gi|124265765|ref|YP_001019769.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
gi|124258540|gb|ABM93534.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
Length = 333
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 103/307 (33%), Gaps = 7/307 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+ G+S T + + ++ + + + + + +
Sbjct: 18 ITGESQKLETEEVEQGGVRDYNLASQERIVRGRMPTMEIINERFSRNIRIGLFNFIRRTP 77
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+++ + + K+S + F+ ++ + I C LV +++ L G + +
Sbjct: 78 EVAVGTIKVQKYSAFLREIVVPTNFNIMAVRPLRGSGLIVCDPTLVFAVIDALFGGAGKF 137
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R S E ++ R + ISA + + LE + T +
Sbjct: 138 HTRIEGRDFSPTELRVISRLVEVISAEYKKAWAGVYPVE--LEYQRSEMQPQFATIAAPS 195
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQ 237
E V T + + I + + + IP TL S+ Q + + ++
Sbjct: 196 EIVVTTSFTVEIGDTSGTIHFCIPYATLEPIRDTLYSTVQGDANEPDRRWVKLLTQQIQA 255
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V++ + T++ ++ LK G I +G ++ C G Y
Sbjct: 256 AEVDLVAELAQAPATVEQLLALKPGDFIELDL--DQVVHAKVDGVPVFDCHYGTSNGKYA 313
Query: 298 IRITDRI 304
I+I +
Sbjct: 314 IKIDQLL 320
>gi|167834865|ref|ZP_02461748.1| flagellar motor switch protein FliM [Burkholderia thailandensis
MSMB43]
Length = 332
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L M +IS +
Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + NLV +++NL G ++
Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + + + + NE V
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLAFEFVRSEMHT--QFANVATPNEIVIVT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
++ + + +P + + S Q ++ + +++ V +
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ TT + ++ L+ G V+P +G + C G Y +R+
Sbjct: 262 ADLAEVPTTFEKILNLRAGDVLPLD--IAESISAKVDGVPVMECGYGIFNGQYALRVQKM 319
Query: 304 INFDQKS 310
I+
Sbjct: 320 ISASDTM 326
>gi|190574232|ref|YP_001972077.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
K279a]
gi|190012154|emb|CAQ45777.1| putative flagellar motor switch protein FliM [Stenotrophomonas
maltophilia K279a]
Length = 334
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 11/302 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + + + ++S +
Sbjct: 32 EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF+ +HS + I LV +++N G ++ R +
Sbjct: 86 KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + Q A L + + + E E+V +++
Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P L + + Q+ ++ E + V + + +
Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGKTLREQLNIAEVTLSSVLA 263
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K+ TL+D+ LK+G ++P + + +++ E G ++IT
Sbjct: 264 SKRMTLRDLTQLKVGDILPIELSPQVP--VCVENIPVFTGEFGIANGMNAVKITATHPPG 321
Query: 308 QK 309
+
Sbjct: 322 TR 323
>gi|206603652|gb|EDZ40132.1| Flagellar motor switch protein FliM) [Leptospirillum sp. Group II
'5-way CG']
Length = 338
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 92/304 (30%), Gaps = 3/304 (0%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ K P+ L + + + + +F + V+ S
Sbjct: 24 ETQAKAADSGEPVKQYNLASQERVIRGRMPTLEIINERFARFFQVTLSATLRKTVEFSPQ 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ KF + + L S N + +V L++++ G S ++
Sbjct: 84 GIEMVKFGDFVKKIPMPSNINILRLESLRRNILLIIDARMVYLLVDHMFGGSGRGHVKIE 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R S +E ++++ + + + + + E V T
Sbjct: 144 GRDFSPIEARISRNVMDLAIGDFEKAWAPVHPM--PITYIRSEINPQFAAIVAPTEMVVT 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ + I+ + + IP T+ Q+ I+ + + + I
Sbjct: 202 MAYRLEIDGQGRTIYICIPYSTIEPIKEKLYTGFQSDQYEVDSRWINRLQERVEEAPLEI 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ I + TL+D++ K G V + G + G + IRI
Sbjct: 262 EAFIGEARFTLRDILGWKTGDVFSLDRYVSEPVEVRVEGIVRFLARPGIFRHHRAIRIER 321
Query: 303 RINF 306
R+
Sbjct: 322 RVPP 325
>gi|83720285|ref|YP_440587.1| flagellar motor switch protein FliM [Burkholderia thailandensis
E264]
gi|167579274|ref|ZP_02372148.1| flagellar motor switch protein FliM [Burkholderia thailandensis
TXDOH]
gi|167617380|ref|ZP_02386011.1| flagellar motor switch protein FliM [Burkholderia thailandensis
Bt4]
gi|83654110|gb|ABC38173.1| flagellar motor switch protein FliM [Burkholderia thailandensis
E264]
Length = 332
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 88/307 (28%), Gaps = 11/307 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L M +IS +
Sbjct: 30 AESSGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + NLV +++NL G ++
Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + + + NE V
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYAVAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
++ + + +P + + S Q ++ + +++ V +
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ TT + ++ L+ G V+P +G + C G Y +R+
Sbjct: 262 ADLAEVPTTFEKILNLRAGDVLPLD--IADSITAKVDGVPVMECGYGIFNGQYALRVQKM 319
Query: 304 INFDQKS 310
I+
Sbjct: 320 ISASDTM 326
>gi|167464156|ref|ZP_02329245.1| flagellar motor switch protein FliM [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382382|ref|ZP_08056289.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321153735|gb|EFX46110.1| FliM-like protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 332
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 106/316 (33%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + + R K + + + + ++L F ++ V I
Sbjct: 27 LKKEETQRKIRSYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I S + + + + N+ +L++LLG +
Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDHLLGGVGVSPS 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ +L+ +E + +R ++ L + T + P LE + NE
Sbjct: 141 KIN--ALTEIETIVMERIFSKAFDSLQEAWKTVVDLQPRLEALET--NPQFMQIVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + L IP + ++ ++++ + ++ + Q
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSVHSWFVSQKKSRAPEEVEALQFRLNQ 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + T+ + + L +G VI + K Y+ G V
Sbjct: 257 AKLPFVAELGSSHITVHEFLNLSVGDVITLQKPVNEPLKIRIGDKYKYTGSPGTVRGKMA 316
Query: 298 IRITDRINFDQKSLKN 313
++I + ++ ++
Sbjct: 317 VQINEPVSEGEEEYDE 332
>gi|226941271|ref|YP_002796345.1| flagellar motor switch protein FliM [Laribacter hongkongensis
HLHK9]
gi|226716198|gb|ACO75336.1| FliM [Laribacter hongkongensis HLHK9]
Length = 329
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 40/311 (12%), Positives = 94/311 (30%), Gaps = 11/311 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + R+ + + + L + + +IS
Sbjct: 28 SAASSVKNYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFIRRNAEISVGP 81
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S I + + + + +LV +++NL G+ ++
Sbjct: 82 VKVQKYSEFIRNLVVPTNLNLCHVKPLRGTALLIFDPDLVFLVVDNLFGSDGRYHVRVEG 141
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + + + + E V ++
Sbjct: 142 RDFTPTEQRIIRRLLDVVFSEYQKAWEPVYPIEFLYMRSEM--NTQFANIATPTEVVVSM 199
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNID 243
+ + F + +P + S+ + +R+ V +
Sbjct: 200 TFRIELGAGGGDFHVCMPYSMVEPIRDQLSSTMAADRTEIDNRWVSLLSRQVQIAEVELV 259
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + TL D++ LK G VIP E A +S G + C G Y +R+
Sbjct: 260 ATLAEAQITLGDILNLKTGDVIPVEIPESIVADVS--GIPVLDCRYGTANGQYALRVERL 317
Query: 304 INFDQKSLKNF 314
+ + +
Sbjct: 318 LAGAHELEQGL 328
>gi|332524239|ref|ZP_08400465.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
JA2]
gi|332107574|gb|EGJ08798.1| flagellar motor switch protein FliM [Rubrivivax benzoatilyticus
JA2]
Length = 334
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 93/304 (30%), Gaps = 11/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ R+ + + + + + ++S
Sbjct: 29 EQTAGGIRDYDLSSQERIVRG------RMPTMEVINERFARNIRIGLFNLIRKSPEVSIG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ KFS + F+ S+ + I C N+V +++ L G + + ++
Sbjct: 83 GIKVQKFSAFLREIVVPTNFNLVSVKPLRGSGLIVCDPNVVFAVIDALFGGAGKFHTRIE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R S E ++ R + I A + LE + +E V +
Sbjct: 143 GRDFSPTELRVILRLVECIIAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVS 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+ I + + + IP TL + S+ Q S ++ + V++
Sbjct: 201 TAFTLEIGDTSGAVHFCIPYSTLEPIRDVLYSTIQGDSAEPDRRWVNLLKHQIQAAEVDL 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T++ +++ K G I +G ++ C G Y I+I
Sbjct: 261 VAELGHAPATVEQLLSFKPGDFIELDLDP--MIQAKVDGVPVFDCHYGTTNGRYAIKIDR 318
Query: 303 RINF 306
+
Sbjct: 319 LLTS 322
>gi|71278806|ref|YP_268251.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H]
gi|71144546|gb|AAZ25019.1| flagellar motor switch protein FliM [Colwellia psychrerythraea 34H]
Length = 354
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
TS R+ + + + + M ++S
Sbjct: 31 QSRDGTSDYDFSSQDRIVRG------RMPTLEMVNERFARHMRISLFNMMRRTAEVSING 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF IH+ + I LV L++N G ++
Sbjct: 85 IQMIKFGEYIHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIEG 144
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + S + + E E V
Sbjct: 145 REFTPTERRIIQMLLKLVFEDYKEAWSPVMDV--SFEYLDSEVNPSMANIVSPTEVVVIS 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F + +P L + + Q+ E+ + + V I+
Sbjct: 203 SFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVTIN 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
T+ +L V+ L+ G +IP + + + +LGR N ++I +
Sbjct: 263 TKFIEVDISLSQVMELQAGDIIPIEMPDN--ITVLIEDLPTFRAKLGRSRDNIALKIESK 320
Query: 304 INFDQ 308
I +
Sbjct: 321 IRRPE 325
>gi|89075520|ref|ZP_01161931.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89048792|gb|EAR54363.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 349
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 36/309 (11%), Positives = 96/309 (31%), Gaps = 11/309 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + + + R+ + + + + + ++
Sbjct: 24 LHDNDVANDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEV 77
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S Q KF ++ + I LV L+EN G
Sbjct: 78 SINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHA 137
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ + + + + S E E
Sbjct: 138 KIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEV 195
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
+ + ++ ++ F +++P + + + Q+ + + +
Sbjct: 196 IVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVP 255
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
VN+ ++ +L+D++ L++G VIP A + Y ++GR G N ++
Sbjct: 256 VNLRAKLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFVEDLPTYHAKMGRSGDNVALK 313
Query: 300 ITDRINFDQ 308
I++++
Sbjct: 314 ISEKLQRPD 322
>gi|187926920|ref|YP_001893265.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
gi|241665249|ref|YP_002983608.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
gi|187728674|gb|ACD29838.1| flagellar motor switch protein FliM [Ralstonia pickettii 12J]
gi|240867276|gb|ACS64936.1| flagellar motor switch protein FliM [Ralstonia pickettii 12D]
Length = 335
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 40/310 (12%), Positives = 99/310 (31%), Gaps = 9/310 (2%)
Query: 1 MRGQSIHKNTSPL--HPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDL 56
++G S + P+ P + ++ + + + + M
Sbjct: 16 LKGVSDEADEEPVEADPSGIRTYNLGSQERIVRGRMPTLEIINERFARNWRIGLFNFMRR 75
Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
+ +IS + K+S I + + + NL+ +++NL G
Sbjct: 76 NAEISVGPVKVQKYSEFIRNLVVPTSLNLVHVKPLRGTALFVFDPNLIFLVVDNLFGGDG 135
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
++ R + VE+++ +R + + + +
Sbjct: 136 RFHMRVEGRDFTDVEQRIIQRMLQLVFEHYARAWQPVYPIDFEFLRMEMHT--EFANVAT 193
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKT 235
NE V T ++ + N + +P + S+ Q ++ + + +++
Sbjct: 194 PNEVVVTTTFSLELGNNGGDVHICMPYTMIEPIRDRLTSAIQGEALEVDKRWLRLLSQQV 253
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
V + + + D++ +K+G VIP +G + C G
Sbjct: 254 QTAEVELIADLATANVQVSDILNMKVGDVIPLEL--DDVVTAKVDGVPVMECNYGTFNGQ 311
Query: 296 YTIRITDRIN 305
Y +R+ +N
Sbjct: 312 YALRVNRMLN 321
>gi|187478203|ref|YP_786227.1| flagellar motor switch protein [Bordetella avium 197N]
gi|115422789|emb|CAJ49317.1| flagellar motor switch protein [Bordetella avium 197N]
Length = 334
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 35/309 (11%), Positives = 95/309 (30%), Gaps = 12/309 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
S R+ + + + + + + + M DI+
Sbjct: 28 SSSSEDNGARAYDLSSPDRVV------RRRMQTLELINERFARNMRHVLLNFMRRSADIT 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S + K++ + + + +LV ++++L G +
Sbjct: 82 VGSIKIIKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPSLVFLVIDSLFGGDGRYHTR 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R +T E+++ +R + + + K + +NE V
Sbjct: 142 VEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHT--KFASITGNNEVV 199
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLN 239
+ ++ + +P + + S E + +R+ +
Sbjct: 200 VVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDSALEEVDQRWSQQLSRQVRSAD 259
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+++ ++++ ++ LK+G V+P +G + C G Y +R
Sbjct: 260 IDLVAEFARIPSSIRGLMNLKVGDVLPVDVP--ESITAHVDGVPLMECSYGVFNGKYALR 317
Query: 300 ITDRINFDQ 308
+ + +N D
Sbjct: 318 VQNMLNQDD 326
>gi|89899368|ref|YP_521839.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
gi|89344105|gb|ABD68308.1| flagellar motor switch protein FliM [Rhodoferax ferrireducens T118]
Length = 329
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 41/279 (14%), Positives = 95/279 (34%), Gaps = 5/279 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + L + +IS ++S + F+ ++
Sbjct: 50 RMPTMEIVNERFARNLRVGLFNFIRRSPEISVGPVTVQRYSAFLRELAVPTNFNIVAIRP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ I C +LV +++ L G + ++ R S E+++ R + I+ +
Sbjct: 110 LRGSGMIVCEPSLVFGVIDTLYGGIGKFQARIEGRDFSATEQRVINRLVDVITEEYKKAW 169
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
LE + +E V + + + I +A S +P TL
Sbjct: 170 KGVYPLE--LEYQRSEMQPQFANIATPSEIVISTSFQLEIGEIAGSIHFCMPYATLEPIR 227
Query: 211 LIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
I S+Q S + ++ ++ + + + T++ ++ +K G I
Sbjct: 228 DILYSSTQGDSIEVDKRWVNVLTQEIQAAEITLVAELARADATVEQLLAMKTGDFIELDR 287
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ ++ G ++ C+ G Y IRI + +
Sbjct: 288 P--SRIEVTVEGVPVFECQYGTHNAKYAIRIDKSLRGND 324
>gi|269103169|ref|ZP_06155866.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163067|gb|EEZ41563.1| flagellar motor switch protein FliM [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 347
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 36/305 (11%), Positives = 93/305 (30%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S R+ + + + + + ++S
Sbjct: 28 SSETGVITFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSING 81
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF ++ + + L+ L+EN G ++
Sbjct: 82 VQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLIFILVENFFGGDGRFHAKIEG 141
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + S E E +
Sbjct: 142 REFTPTERRIIQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVS 199
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F +++P + + + Q+ + + + VNI
Sbjct: 200 SFHIELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSRALREEIMDIPVNIR 259
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
++ TL+D++ L++G +IP A + Y ++GR G N ++I+++
Sbjct: 260 AKLLDVDLTLRDLMELQVGDIIPVDMP--DTATVFVEDLPTYRAKMGRSGDNVALKISEK 317
Query: 304 INFDQ 308
+
Sbjct: 318 LKRPD 322
>gi|21231367|ref|NP_637284.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|188991610|ref|YP_001903620.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris str. B100]
gi|21113030|gb|AAM41208.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|167733370|emb|CAP51571.1| Flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris]
Length = 337
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LKIG ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|194365650|ref|YP_002028260.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
R551-3]
gi|194348454|gb|ACF51577.1| flagellar motor switch protein FliM [Stenotrophomonas maltophilia
R551-3]
Length = 334
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 11/302 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + + + ++S +
Sbjct: 32 EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF+ +HS + I LV +++N G ++ R +
Sbjct: 86 KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + Q A L + + + E E+V +++
Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P L + + Q+ ++ E + V + + +
Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLA 263
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K+ TL+D+ LK+G ++P + L +++ E G ++IT
Sbjct: 264 SKRMTLRDLTQLKVGDILPIELSPQVP--LCVENIPVFTGEFGIANGMNAVKITATHPPG 321
Query: 308 QK 309
+
Sbjct: 322 TR 323
>gi|90579934|ref|ZP_01235742.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90438819|gb|EAS64002.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 349
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 36/304 (11%), Positives = 95/304 (31%), Gaps = 11/304 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ + + R+ + + + + + ++S
Sbjct: 29 VANDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 82
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF ++ + I LV L+EN G ++ R
Sbjct: 83 QMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGR 142
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + + + S E E + +
Sbjct: 143 EFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSS 200
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F +++P + + + Q+ + + + VN+
Sbjct: 201 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVNLRA 260
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ +L+D++ L++G VIP A + Y ++GR G N ++I++++
Sbjct: 261 KLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFVEDLPTYHAKMGRSGDNVALKISEKL 318
Query: 305 NFDQ 308
Sbjct: 319 QRPD 322
>gi|42766718|gb|AAS45442.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei]
Length = 332
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 11/307 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + R+ + + + L M +IS +
Sbjct: 30 AEASGIRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQ 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S + + + S NLV +++NL G ++
Sbjct: 84 VKVQKYSEFTRNLPIPTNLNLVHVKSLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + + + NE V
Sbjct: 144 RDFTATEQRIIGKLLNLVFEHYASAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
++ + + +P + + S Q ++ + +++ V +
Sbjct: 202 QFSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ TT + ++ L+ G V+P +G + C G Y +R+
Sbjct: 262 ADLAEVPTTFEKILNLRTGDVLPLDIT--DSITAKVDGVPVMECGYGIFNGQYALRVQRM 319
Query: 304 INFDQKS 310
I+
Sbjct: 320 ISASDTM 326
>gi|307824486|ref|ZP_07654711.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
SV96]
gi|307734470|gb|EFO05322.1| flagellar motor switch protein FliM [Methylobacter tundripaludum
SV96]
Length = 331
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 10/297 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
R+ + + +F+ + +I + Q K
Sbjct: 45 VREYDFASQERIVRG------RMPTLEMVNERFARFIRISLFNFLRRSAEIFISGIQVQK 98
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
FS I + + I LV T+++N G + + Q R +
Sbjct: 99 FSEYIQGLLVPTNLTIVRFNPLRGKALIVIDPRLVFTVVDNFFGGAGQFYNQTEGREFTP 158
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E ++ + I I L + E E + E + +++
Sbjct: 159 TEMRVVRIIIDMIFKDLKEAWKPVMELD--FEYVGAEINPRFANIIGPGEIIVISTIHVE 216
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+E + +P L + + + S + + V+I++ + K
Sbjct: 217 LEGGGGDVNIAMPYAMLEPIRELLDAISSDSGEVDGGWQAALRGEVLRAEVSINSLLVEK 276
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
T++DV+ LK G VIP IL A G ++ ++G NY I+I D++
Sbjct: 277 NMTIRDVMRLKKGDVIPIDMP--DTVILKAEGIPVFEGKVGISDGNYAIQIIDKVKS 331
>gi|59712452|ref|YP_205228.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
gi|197335836|ref|YP_002156671.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
gi|59480553|gb|AAW86340.1| flagellar motor switch protein FliM [Vibrio fischeri ES114]
gi|197317326|gb|ACH66773.1| flagellar motor switch protein FliM [Vibrio fischeri MJ11]
Length = 344
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVSMVKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + I + S E E + + ++ ++
Sbjct: 151 RIIQLLLKVIFEDYKEAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F ++ P + + + Q+ + + + V + + +
Sbjct: 209 GGGDFHVVFPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVPVEMKVNLLESQI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+L+D++ L+ G +IP A + Y ++G+ I+IT++I
Sbjct: 269 SLRDLMELEAGDIIPVEMP--EAATVFVEDLPTYRGKVGQSNDKLAIQITEKIKRPD 323
>gi|288942630|ref|YP_003444870.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM
180]
gi|288898002|gb|ADC63838.1| flagellar motor switch protein FliM [Allochromatium vinosum DSM
180]
Length = 325
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 11/302 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
P R+ + + ++L + +IS
Sbjct: 34 TDGQARPYDFATQDRIVRG------RMPTLDMINERFARYLRVHLFNLLRRSSEISVIGA 87
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ KFS +HS + + LV L++N G ++ R
Sbjct: 88 RVTKFSEYLHSLYVPTSLNLVRVYPLHGTALFVFDPKLVFGLVDNFFGGDGRYYSRIEGR 147
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ +E ++ K + + + + + + E V +
Sbjct: 148 DFTPMEMRVIKNLLDASFSDMQKAWEPVMHLDFEFINAEV--NPQFANIVSPTEIVVIND 205
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ +E + + P + + + Q+ + + V I +
Sbjct: 206 FHIELEGGGGNMHVTFPYSMIEPIREVLDTGLQSDRSGVDQRWQRALEEEIPLAKVEISS 265
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ T++ ++ +K G +IP +L+ ++ + G I+I + I
Sbjct: 266 VLTEVTLTVEQLLEVKPGDIIPVDLP--ETIVLNVEDIPLFRGKFGVSNGINAIKIMEHI 323
Query: 305 NF 306
Sbjct: 324 KH 325
>gi|253573530|ref|ZP_04850873.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847058|gb|EES75063.1| flagellar motor switch protein FliM [Paenibacillus sp. oral taxon
786 str. D14]
Length = 333
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 108/316 (34%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + ++L F ++ V I
Sbjct: 27 LKKEETQKKIRSYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I S + + + + N+ +L+ LLG
Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAFAMLDRLLGGLGTAPS 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ L+ +E + +R ++ L + T + +P +E + NE
Sbjct: 141 KVGT--LTEIETIIMERIFSRAFESLQEAWKTVVDINPRMEALET--NPQFMQIVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + + L IP + ++ +++ + ++ + +
Sbjct: 197 IALISLSTKIGDTSGMINLCIPHVVIEPIMPKLSVHHWFVSQKKSRVPEEVEALRNRVNK 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + + T+++ ++L +G VI + + + Y G V
Sbjct: 257 AKLPIIAELGESQITVREFLSLSVGDVISLNKPVQEGLQIRVGDRLKYIGSPGTVKDRLA 316
Query: 298 IRITDRINFDQKSLKN 313
++I + ++ + L
Sbjct: 317 VQIDEIVSEGAEELDE 332
>gi|171057710|ref|YP_001790059.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
gi|170775155|gb|ACB33294.1| flagellar motor switch protein FliM [Leptothrix cholodnii SP-6]
Length = 334
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 41/306 (13%), Positives = 94/306 (30%), Gaps = 12/306 (3%)
Query: 1 MRGQSIHKN-TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
+ + K R+ + + + + + +
Sbjct: 25 LEQEDTPKGGIRDYDLASQERIVRG------RMPTLEIINERFSRNIRIGLFNFIRKTPE 78
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+S + K+S + F+ S+ + I C LV ++++ L G S +
Sbjct: 79 VSVGGIKVQKYSAFLRETVVPTNFNIVSVRPLRGSGMIVCDPTLVFSVIDALFGGSGKFH 138
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R S E+++ R + I+ + LE + E
Sbjct: 139 TRIEGRDFSPTEQRVISRIVEVIATEYKKAWQGIYPLE--LEYQRSEMQPQFANIAAPGE 196
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQL 238
V T + + I + + IP TL + S+Q S + +
Sbjct: 197 IVVTTSFTLEIGDATGTIHFCIPYATLEPIRDVLYSSTQGDSAEPDRRWVKLMTHQIQAA 256
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V + + T++ ++ LK G I + + +G + + G Y +
Sbjct: 257 QVQLVAELAHAPATVEQLLALKAGDFIELDLIKS--IEVKVDGVPVMEAQYGTSNGKYAL 314
Query: 299 RITDRI 304
++ +
Sbjct: 315 KVDRML 320
>gi|311992317|gb|ADQ26732.1| flagellar motor switch protein [Aeromonas hydrophila]
Length = 356
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + R+ + + + + M ++S
Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +H+ + I LV L+EN G ++
Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + + + + E E +
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ + + + V
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ ++ + TL++++ L+ G +IP E ++ + ++GR N ++IT
Sbjct: 258 LRAKLLETELTLRELMELQPGDIIPVEMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315
Query: 302 DRINFDQ 308
D++ +
Sbjct: 316 DKLKRPE 322
>gi|117619656|ref|YP_855911.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561063|gb|ABK38011.1| flagellar motor switch protein FliM [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 356
Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + R+ + + + + M ++S
Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +H+ + I LV L+EN G ++
Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + + + + E E +
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ + + + V
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ ++ + TL++++ L+ G +IP E ++ + ++GR N ++IT
Sbjct: 258 LRAKLLETELTLRELMELQPGDIIPVEMPEN--LLVFVEDLPTFHAKMGRTKDNVALKIT 315
Query: 302 DRINFDQ 308
D++ +
Sbjct: 316 DKLKRPE 322
>gi|254523832|ref|ZP_05135887.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
gi|219721423|gb|EED39948.1| flagellar motor switch protein FliM [Stenotrophomonas sp. SKA14]
Length = 334
Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 11/302 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + + + ++S +
Sbjct: 32 EARSYDFASQDRIIRG------RMPTLEMVHERFARLWRIGLFNLIRRSAELSVRGIELI 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF+ +HS + I LV +++N G ++ R +
Sbjct: 86 KFNDYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFAIVDNFFGGDGRYPTRIEGREFT 145
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + Q A L + + + E E+V +++
Sbjct: 146 ATEMRVIHLLLKQTFADLREAWAPVMDVD--FEYINSEINPHFANIVTPREYVVVCRLHV 203
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P L + + Q+ ++ E + V + + +
Sbjct: 204 ELDGGGGDIHVTLPYSMLEPIRELLDAGIQSDRNDRDESWGQTLREQLNIAEVTLSSVLA 263
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K+ TL+D+ LK+G V+P + L +++ E G ++IT
Sbjct: 264 SKRMTLRDLTRLKVGDVLPIELNPQVP--LCVENIPVFTGEFGIANGMNAVKITATHPPG 321
Query: 308 QK 309
+
Sbjct: 322 TR 323
>gi|330445373|ref|ZP_08309025.1| flagellar motor switch protein FliM [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489564|dbj|GAA03522.1| flagellar motor switch protein FliM [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 349
Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 36/309 (11%), Positives = 95/309 (30%), Gaps = 11/309 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + + R+ + + + + + ++
Sbjct: 24 LHDDEASSDVATFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEV 77
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S Q KF ++ + I LV L+EN G
Sbjct: 78 SINGVQMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHA 137
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ + + + + S E E
Sbjct: 138 KIEGREFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEV 195
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
+ + ++ ++ F +++P + + + Q+ + + +
Sbjct: 196 IVVSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDTDVRWSKALRDEIMDVP 255
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
VN+ ++ +L+D++ L++G VIP A + Y ++GR G N ++
Sbjct: 256 VNLRAKLLDVDLSLRDLMELQVGDVIPIDMP--EQATIFIEDLPTYHAKMGRSGDNVALK 313
Query: 300 ITDRINFDQ 308
I++++
Sbjct: 314 ISEKLKRPD 322
>gi|58582231|ref|YP_201247.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624124|ref|YP_451496.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188576791|ref|YP_001913720.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576983|ref|YP_001913912.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58426825|gb|AAW75862.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368064|dbj|BAE69222.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521243|gb|ACD59188.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521435|gb|ACD59380.1| flagellar motor switch protein FliM [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 337
Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 16/302 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTMEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + LE E+
Sbjct: 140 RIEGREFTATEMRVVQLMLKQTFADLKEAWAPVMDVD--LEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLN 239
V ++ +E + +P L + + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEGGGGEIHITLPYSMLEPIRELLDAGIQSDRNDRDDSWNVMLREQLDTAE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + K+ +L+ + LK+G ++P + L +++ E G N ++
Sbjct: 258 VTLSSVLASKRMSLRQLTGLKVGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAVK 315
Query: 300 IT 301
IT
Sbjct: 316 IT 317
>gi|74055041|gb|AAZ95846.1| FliM [Aeromonas hydrophila]
Length = 356
Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 37/307 (12%), Positives = 95/307 (30%), Gaps = 11/307 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + R+ + + + + M ++S
Sbjct: 26 GAAGDPGVAQFDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSI 79
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +H+ + I LV L+EN G ++
Sbjct: 80 NGVQMLKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRYHAKI 139
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + + + + E E +
Sbjct: 140 EGREFTPTERRIIQMLLKLVFEDYKDAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIV 197
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ + + + V
Sbjct: 198 VSSFHIELDGGGGDFHVAMPYSMLEPIRELLDAGVQSDKGDTDVRWSKALRDEIMDVKVE 257
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ ++ TL++++ L+ G +IP E ++ + ++GR +N ++IT
Sbjct: 258 LRAKLLETDLTLRELMELRPGDIIPVEMPEN--LLVYVEDLPTFHAKMGRTKENVALKIT 315
Query: 302 DRINFDQ 308
D++ +
Sbjct: 316 DKLKRPE 322
>gi|239817144|ref|YP_002946054.1| flagellar motor switch protein FliM [Variovorax paradoxus S110]
gi|239803721|gb|ACS20788.1| flagellar motor switch protein FliM [Variovorax paradoxus S110]
Length = 333
Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 4/280 (1%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
++ + + + L M DIS ++ + + +
Sbjct: 50 RSRMHTLEVINERFARHLRSSLLNFMRRSPDISVGPVHIQQYGEFVRHLPVPANINMLHM 109
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
LV +++NL G+ ++ R + E+++ KR +
Sbjct: 110 KPLRGTALFVFDPKLVFLVVDNLFGSDGRYHVRVEGRDFTRTEQRIIKRLLNLTLQCYAD 169
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
S + K NE V + + V + IP +
Sbjct: 170 AWQPVFPLSFDYVRAEMHG--KLANIVAPNEVVINTTLQIEFGPVGGFLHVCIPYSMIEP 227
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ + + + +++ +V + +T+ +V+ L++G V+P
Sbjct: 228 IRDLLSNPVQDEIEVDKRWVRQMSQQMQSADVELSAEFITLPSTIGEVLKLQVGDVLPIE 287
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+G + C G + Y +R+ I+
Sbjct: 288 LPTS--ITARVDGIPVMECGYGVSNERYALRVLQMISHQD 325
>gi|85711035|ref|ZP_01042095.1| flagellar motor switch protein [Idiomarina baltica OS145]
gi|85694948|gb|EAQ32886.1| flagellar motor switch protein [Idiomarina baltica OS145]
Length = 354
Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
R+ + + + + M ++S Q
Sbjct: 32 SEALDYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRTAEVSINGVQM 85
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF +H+ + I LV L++N G ++ R
Sbjct: 86 LKFGEYVHTLFVPTSLNMVRFRPLKGTALITMEARLVFILVDNFFGGDGRYHAKIEGREF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + I + + + E E + + +
Sbjct: 146 TPTERRIIQMLLKLIFEDYKEAWAPVMDV--GFEYLDSEVNPAMANIVSPTEVIVISSFH 203
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ F + +P L + + Q+ E+ + + V + ++
Sbjct: 204 IELDGGGGDFHIALPYSMLEPIRELLDAGVQSDKEDTDMRWSKALRDEIMDVPVEMVAKL 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
TL++V+ + G +IP + + + ++GR N ++I+D+I
Sbjct: 264 ADVDVTLREVMDFEEGDIIPLEVPDN--LTVFIEDLPTFHAKMGRSRDNIALKISDKIRR 321
Query: 307 DQ 308
+
Sbjct: 322 PE 323
>gi|46579323|ref|YP_010131.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603117|ref|YP_967517.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
gi|46448737|gb|AAS95390.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563346|gb|ABM29090.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris DP4]
gi|311233150|gb|ADP86004.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris RCH1]
Length = 326
Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats.
Identities = 42/300 (14%), Positives = 89/300 (29%), Gaps = 10/300 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q P R+ + + + + + V+++
Sbjct: 29 QHDDSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPI 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S KF + S + + N I + LV L+EN G S ++
Sbjct: 83 SIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENFFGGSGSQP-KIE 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + +E+ + R I + + + L + ++ V
Sbjct: 142 GREFTRIEQAIVDRVIHIALDNMEESWRPVHDVHLELVR--SEINPQFAAIVPPSDVVVV 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNI 242
I + +++ S V+ +P T+ S Q + + + + V +
Sbjct: 200 ITFEVELDSAIGSMVICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLMETPVEL 259
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
R K T ++ L++G V+ ++ G + G V N +I
Sbjct: 260 KVRFGETKITGNQLLRLQVGDVLLLDTDTDDMLEVTIAGVTKFWGLGGTVKANKAFQIVK 319
>gi|221069291|ref|ZP_03545396.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
gi|220714314|gb|EED69682.1| flagellar motor switch protein FliM [Comamonas testosteroni KF-1]
Length = 334
Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats.
Identities = 39/311 (12%), Positives = 99/311 (31%), Gaps = 7/311 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+ G+S + + ++ + + + + +
Sbjct: 18 VTGESQRSEVVEVDLGQVRSYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
++S + ++S + F+ ++ N I C +LV +++ L G +
Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R ST E+++ R + I + + + +
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQRSEM--QPQFANIATPS 195
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237
E V + + I +++ S + +P TL + S+Q + + R+
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + T++ ++ ++ G I S G ++ C+ G Y
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313
Query: 298 IRITDRINFDQ 308
IR+ +
Sbjct: 314 IRVERSLRGGD 324
>gi|237731993|ref|ZP_04562474.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2]
gi|226907532|gb|EEH93450.1| flagellar motor switch protein fliM [Citrobacter sp. 30_2]
Length = 349
Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats.
Identities = 40/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G + + P P R+ + + + + + + DI
Sbjct: 41 ISGIAKESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDI 94
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + + + + L + S +LV ++NL G
Sbjct: 95 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 154
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ R + + + N N+
Sbjct: 155 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 213
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239
V ++ I N+ F + +P + + ++ + S N+ ++ + R+
Sbjct: 214 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 273
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + L ++ LK G V+P I +G + + + G V Y +R
Sbjct: 274 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 331
Query: 300 ITDRINF 306
+ IN
Sbjct: 332 VEHLINP 338
>gi|251772382|gb|EES52949.1| flagellar motor switch protein FliM [Leptospirillum
ferrodiazotrophum]
Length = 341
Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 88/301 (29%), Gaps = 9/301 (2%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K T + R+ + + +F + V+ S S +
Sbjct: 36 KKTREYNLASQERVIRG------RMPTLEIVNERFARFFQITLSSTLRKAVEFSPVSTEM 89
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF I + L NF + +V L+++L G ++ R
Sbjct: 90 IKFGEFIKKIPLPSNINILRLEPMKRNFLLIIDARMVYLLVDHLFGGVGRGHVKVEGRDF 149
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E ++ + + Q + + + + + E V +
Sbjct: 150 SPIENRITRNILNQAIGDFEKAWAPVHHI--GVSYIRSEINPQFSAIVSPTEMVIALTYR 207
Query: 188 MTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ I+ + IP T+ Q+ I ++ + + I +
Sbjct: 208 LDIDGQGRPVYICIPYSTIEPIKEKLYTGFQSDQYEVDHRWILRLRQQIDSVPIKIVAEL 267
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
K L +V+ K G +I ++ + G + +RI +R+
Sbjct: 268 GTTKARLSEVLAWKPGDMITLDQYVDDPIKITVEKALRFKARPGVYRSSRAVRIEERVFP 327
Query: 307 D 307
D
Sbjct: 328 D 328
>gi|327441044|dbj|BAK17409.1| flagellar motor switch protein [Solibacillus silvestris StLB046]
Length = 331
Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats.
Identities = 45/285 (15%), Positives = 97/285 (34%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V I+ S F + S + +
Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + N+ ++L+ L+G + + + N L+ +E K+ + L
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGAGGSHSNVDN--LTEIETKIMTNLFERSFDNLR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P L + NE V I+ N I + IP L
Sbjct: 167 EAWENVAEIDPMLV--ELEVNPQFLQMISPNETVVVISFNTIIGETTGMINICIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q ++ S + + Q + I + T++D +T+ +G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEISPEQSKMLESRVKQAKLPIIAELGSSDITIEDFLTMAVGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
IP + + L ++ + G++ ++I D + +
Sbjct: 285 IPLKQKIENPLTLKVGSLPKFTVQPGKLNNKMAVQIIDPLKGGDE 329
>gi|330814983|ref|YP_004358688.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
gi|327367376|gb|AEA58732.1| Flagellar motor switch protein FliM [Burkholderia gladioli BSR3]
Length = 332
Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
P + R+ + + + L M +IS + +
Sbjct: 33 SGVRPYNLATQERIVRG------RMPGMEIINDRFARLLRVGIFNFMRRTAEISVSQVKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S + + + NLV +++NL G ++ R
Sbjct: 87 QKYSEFTRNLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E ++ + + + + + E + + NE V +
Sbjct: 147 TQTEMRIISKLLHMVFEHYTVAWKSVRPLQ--FEHVRSEMHTQFANVATPNEIVIVTQFS 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ + + +P + + S Q ++ + +++ V + +
Sbjct: 205 IEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQAAEVELTADL 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
TT + ++ L++G V+P +G + C G Y +R+ I
Sbjct: 265 AEVPTTFERILNLRVGDVLPLD--IGDAVTAKVDGVPVMECGYGIFNGQYALRVNRMIGA 322
Query: 307 DQ 308
Sbjct: 323 SD 324
>gi|120613024|ref|YP_972702.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
gi|120591488|gb|ABM34928.1| flagellar motor switch protein FliM [Acidovorax citrulli AAC00-1]
Length = 334
Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + +IS + ++S
Sbjct: 38 YDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQRYSA 91
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ F+ ++ + I C +LV +++ L G + ++ R S E+
Sbjct: 92 FLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSPTEQ 151
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ R + I A + LE + +E V + + I +
Sbjct: 152 RVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQLEIGD 209
Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
++ + + +P TL + S+Q S + R+ V + +
Sbjct: 210 LSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLVAELARADA 269
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
T++ ++ +K G I S G I+ C+ G Y IRI + +
Sbjct: 270 TVEQLLAMKPGDFIELDREP--RIQASIGGVPIFECQYGTHNSKYAIRIEECLRNPD 324
>gi|326319064|ref|YP_004236736.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375900|gb|ADX48169.1| flagellar motor switch protein FliM [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 334
Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + +IS + ++S
Sbjct: 38 YDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQRYSA 91
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ F+ ++ + I C +LV +++ L G + ++ R S E+
Sbjct: 92 FLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSPTEQ 151
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ R + I A + LE + +E V + + I +
Sbjct: 152 RVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQLEIGD 209
Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
++ + + +P TL + S+Q S + R+ V + +
Sbjct: 210 LSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLVAELARADA 269
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
T++ ++ +K G I S G I+ C+ G Y IRI + +
Sbjct: 270 TVEQLLAMKPGDFIELDREP--RIQASIGGVPIFECQYGTHNSKYAIRIEECLRNPD 324
>gi|50120652|ref|YP_049819.1| flagellar motor switch protein FliM [Pectobacterium atrosepticum
SCRI1043]
gi|49611178|emb|CAG74624.1| flagellar motor switch protein [Pectobacterium atrosepticum
SCRI1043]
Length = 337
Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats.
Identities = 41/309 (13%), Positives = 95/309 (30%), Gaps = 10/309 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
P P R+ + + + + + + DI+
Sbjct: 32 TDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMSLFNLLRRSPDITVGGI 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + L S +LV ++NL G ++ R
Sbjct: 86 KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ KR + + + + + N N+ V T
Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
++ I ++ F + IP + + + + S + + D A++ + +
Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L ++ L+ G V+P + +G + + + G + Y +R+ I
Sbjct: 265 SFVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHLI 322
Query: 305 NFDQKSLKN 313
N SL N
Sbjct: 323 NPILNSLDN 331
>gi|264676601|ref|YP_003276507.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
gi|299531254|ref|ZP_07044664.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
gi|262207113|gb|ACY31211.1| flagellar motor switch protein FliM [Comamonas testosteroni CNB-2]
gi|298720661|gb|EFI61608.1| flagellar motor switch protein FliM [Comamonas testosteroni S44]
Length = 334
Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats.
Identities = 39/311 (12%), Positives = 100/311 (32%), Gaps = 7/311 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+ G+S + + ++ + + + + +
Sbjct: 18 VTGESQRSEVVEVDLGQVRSYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSP 77
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
++S + ++S + F+ ++ N I C +LV +++ L G +
Sbjct: 78 EVSVGTVTVQRYSAFLRELAVPTNFNIMAIRPLRGNGLIVCDPSLVFGVIDTLYGGTGRL 137
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R ST E+++ R + I + + + +
Sbjct: 138 QTRIEGRDFSTTEQRVINRMVNVICEEYKKAWHGIYPLELAYQRSEM--QPQFANIATPS 195
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQ 237
E V + + I +++ S + +P TL + S+Q + + R+
Sbjct: 196 EIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDAIEVDRRWVKVLTREIQA 255
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + + T++ ++ ++ G I S G ++ C+ G Y
Sbjct: 256 AEVTLVAELARADATVEQLLAMRPGDFIELDREP--LIRASIGGVPVFECQYGTHNDKYA 313
Query: 298 IRITDRINFDQ 308
IR+ + +
Sbjct: 314 IRVERSLRGGE 324
>gi|114320135|ref|YP_741818.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226529|gb|ABI56328.1| flagellar motor switch protein FliM [Alkalilimnicola ehrlichii
MLHE-1]
Length = 395
Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats.
Identities = 36/290 (12%), Positives = 90/290 (31%), Gaps = 5/290 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
T + + + + + + ++S + KF +H+
Sbjct: 39 FTAEERIVRGRMPTLEMINERFARLFRIGLFNMLRRTPEVSVVGVEMMKFGEYVHTLFVP 98
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ + LV +++N G ++ R + E ++ + I
Sbjct: 99 TSLNLMRVHPLRGTGLFIIDPKLVFIVVDNFFGGDGRFFVKIEGREFTPTELRVIRMLID 158
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
Q L + + + E + + +E V ++ ++ +
Sbjct: 159 QAFENLEEAWNPV--MNAEFEYMHSEVNPQFANIVSPSEVVVVSKFHVELDGGGGDIHVT 216
Query: 201 IPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+P + + + Q+ E + V + + + + +L+DV+ +
Sbjct: 217 LPYTMIEPIRELLDAGVQSDRNEVDERWTRSLREEMKFAEVELSSVLTEVEVSLRDVMNM 276
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K G +IP + A ++ G N I+IT+RI +
Sbjct: 277 KPGDIIPVELP--EAVKVYAEDMPVFRGRYGVRHGNTAIKITERIQPRAE 324
>gi|241763648|ref|ZP_04761698.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
gi|241367123|gb|EER61489.1| flagellar motor switch protein FliM [Acidovorax delafieldii 2AN]
Length = 334
Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ R+ + + + + +IS +
Sbjct: 30 AEAGAVRNYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGT 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++S + F+ ++ + I C +LV +++ L G + ++
Sbjct: 84 VSVQRYSAFLRELAVPTNFNIVAIRPLRGSGLIVCEPSLVFGIIDTLYGGVGKFQTRIEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R S E+++ R + I A + LE + +E V +
Sbjct: 144 RDFSPTEQRVINRLVDVICAEYKKAWHGIYPLE--LEYQRSEMQPQFANIATPSEIVVST 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ I +++ + + +P TL + S+Q S + R+ V +
Sbjct: 202 AFQLEIGDLSGAIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVTLV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ T++ ++ +K G I S G I+ C+ G Y IRI +
Sbjct: 262 AELAQADATVEQLLAMKPGDFIELDREP--RIRASIGGVPIFECQYGTHNSKYAIRIEEC 319
Query: 304 INFDQ 308
+
Sbjct: 320 LRNAD 324
>gi|261340410|ref|ZP_05968268.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC
35316]
gi|288317502|gb|EFC56440.1| flagellar motor switch protein FliM [Enterobacter cancerogenus ATCC
35316]
Length = 334
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + N P P R+ + + + + + + DI+
Sbjct: 28 GLAGDDNIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ + R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 261 LVANFADVSMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|238025700|ref|YP_002909931.1| flagellar motor switch protein FliM [Burkholderia glumae BGR1]
gi|237874894|gb|ACR27227.1| Flagellar motor switch protein FliM [Burkholderia glumae BGR1]
Length = 332
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 93/306 (30%), Gaps = 11/306 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
K P + R+ + + + L M +IS +
Sbjct: 31 EQKGVRPYNLATQERIVRG------RMPGLEIINDRFARLLRVGIFNFMRRTAEISVSQV 84
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ K+S + + + NLV +++NL G ++ R
Sbjct: 85 KVQKYSEFTRNLPIPTNLNLVHIKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGR 144
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E ++ R + + + + + E + + NE V
Sbjct: 145 DFTQTEMRIISRLLHLVFEHYSVAWKSVRPLQ--FEHVRSEMHTQFANVATPNEIVIVTQ 202
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ + + +P + + S Q ++ + +++ V +
Sbjct: 203 FSIEFGPTGGTLHICMPYSMIEPIRDVLSSPIQGEALEVDRRWVRVLSQQVQSAEVELTA 262
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +T + ++ L++G V+P + I +G + C G Y +R+ I
Sbjct: 263 NLTEMPSTFEKILNLRVGDVLPID--VEESIIAKVDGVPVMECGYGIFNGQYALRVNRMI 320
Query: 305 NFDQKS 310
+
Sbjct: 321 SASDTM 326
>gi|261821166|ref|YP_003259272.1| flagellar motor switch protein FliM [Pectobacterium wasabiae
WPP163]
gi|261605179|gb|ACX87665.1| flagellar motor switch protein FliM [Pectobacterium wasabiae
WPP163]
Length = 337
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 41/309 (13%), Positives = 96/309 (31%), Gaps = 10/309 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ P P R+ + + + + + + DI+
Sbjct: 32 TDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMALFNLLRRSPDITVGGI 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + L S +LV ++NL G ++ R
Sbjct: 86 KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ KR + + + + + N N+ V T
Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
++ I ++ F + IP + + + + S + + D A++ + +
Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L ++ L+ G V+P + +G + + + G + Y +R+ I
Sbjct: 265 NFVDIPLRLSKILKLQPGDVLPIDKP--EKIVAHVDGVPVLTSQYGTLNGQYALRVEHLI 322
Query: 305 NFDQKSLKN 313
N SL N
Sbjct: 323 NPILNSLDN 331
>gi|121533750|ref|ZP_01665577.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
Nor1]
gi|121307741|gb|EAX48656.1| flagellar motor switch protein FliM [Thermosinus carboxydivorans
Nor1]
Length = 334
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 105/313 (33%), Gaps = 14/313 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + + + K + L + + + + V I
Sbjct: 29 IKSEQKERKIKVYDFKRPDKF------SKDQIRTLYMLHENFARLINTYLSAHLRTLVHI 82
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ S + I S V S + N + + N+V +++ L G +
Sbjct: 83 NVASVDQLTYEEFIRSLPNPSVISIFQMPPLKGNVILELNPNIVFAVIDRLFGGTGVAPV 142
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R L+ +E+ + +R +A++ + P + + ++
Sbjct: 143 KP--RPLTDIEEAIIRRVLAKMLEGFQEAWKQVVAVEPRIGAIET--NPQFAQIVPPSDM 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS----QNKSENQSEDLIDPFARKTY 236
V I + I + IP L ++ ++ +++ I RK
Sbjct: 199 VVIITLQAKIGQAEGLINVCIPYLVLEPIMSKLTTTFWVALGTTKQVTQENITTLQRKLQ 258
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ +V + + T++D++ L +G V+ R + +E + C+ G VG
Sbjct: 259 RTSVPVIVELGRATVTVQDLLDLAVGDVLQLESRFDGELSVIIGQREKFKCKPGLVGGKV 318
Query: 297 TIRITDRINFDQK 309
++IT+ + +
Sbjct: 319 AVQITEVMLKGDE 331
>gi|262276388|ref|ZP_06054197.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
gi|262220196|gb|EEY71512.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
Length = 353
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 36/308 (11%), Positives = 92/308 (29%), Gaps = 11/308 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G S R+ + + + + + ++S
Sbjct: 27 SGSEDVGAASNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMIRKTAEVS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
Q KF ++ + I LV L+EN G +
Sbjct: 81 INGVQMVKFGEYQNTLFVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAR 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ + + I + E E +
Sbjct: 141 IEGREFTPTERRVIQMLLKLIFEDYKDAWAPVMRVE--FEYLDSEVNPAMANIVSPTEVI 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
+ ++ ++ F +++P + + + Q+ + + + + V
Sbjct: 199 VVSSFHIELDGGGGDFHVVMPYSMVEPIRELLDAGIQSDKMDTDKRWSKALQDEVMDVEV 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
++ ++ +L+D++ ++ G VIP + + +LG+ N I+I
Sbjct: 259 SLTAKLLETTLSLRDLMEMEAGDVIPVKMP--DACTVYIEDLPTFRGKLGQSNDNLAIKI 316
Query: 301 TDRINFDQ 308
TD++ +
Sbjct: 317 TDKLKRPE 324
>gi|251789181|ref|YP_003003902.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591]
gi|247537802|gb|ACT06423.1| flagellar motor switch protein FliM [Dickeya zeae Ech1591]
Length = 338
Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats.
Identities = 40/316 (12%), Positives = 98/316 (31%), Gaps = 16/316 (5%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
P P R+ + + + + + + DI+ +
Sbjct: 32 QKDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L S +LV ++NL G ++
Sbjct: 86 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + + + + N N+ V T
Sbjct: 146 REFTHTEQRVVRRMLKLALDAYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I + F + IP + + + + S+ + + + A++ + +
Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L V+ LK G ++P + +G + +C+ G + Y +R+
Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322
Query: 304 INF------DQKSLKN 313
IN D++ L
Sbjct: 323 INPILNSLNDEEPLNE 338
>gi|126653737|ref|ZP_01725655.1| flagellar motor switch protein M [Bacillus sp. B14905]
gi|126589701|gb|EAZ83837.1| flagellar motor switch protein M [Bacillus sp. B14905]
Length = 331
Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats.
Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V I+ S F + S + +
Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + N+ ++L+ L+G S + + N L+ +E K+ + L
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P L + NE V I++N I + + IP L
Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q ++ S + + Q + + + L T++D +T+++G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQVGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + +L ++ + G+ GK I+I D + +
Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329
>gi|253688959|ref|YP_003018149.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755537|gb|ACT13613.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 337
Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats.
Identities = 42/309 (13%), Positives = 96/309 (31%), Gaps = 10/309 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ P P R+ + + + + + + DI+
Sbjct: 32 VDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGGI 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + L S +LV ++NL G ++ R
Sbjct: 86 KIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGR 145
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ KR + + + + + N N+ V T
Sbjct: 146 EFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTP 204
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
++ I ++ F + IP + + + + S + + D A++ + +
Sbjct: 205 FHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVA 264
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L ++ L+ G V+P I +G + + + G + Y +R+ I
Sbjct: 265 SFVDIPLRLSKILKLQPGDVLPIDKP--DKIIAHVDGVPVMTSQYGTLNGQYALRVEHLI 322
Query: 305 NFDQKSLKN 313
N SL N
Sbjct: 323 NPILNSLDN 331
>gi|33592495|ref|NP_880139.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I]
gi|33601558|ref|NP_889118.1| flagellar motor switch protein FliM [Bordetella bronchiseptica
RB50]
gi|33572141|emb|CAE41684.1| flagellar motor switch protein FliM [Bordetella pertussis Tohama I]
gi|33575994|emb|CAE33074.1| flagellar motor switch protein FliM [Bordetella bronchiseptica
RB50]
gi|332381913|gb|AEE66760.1| flagellar motor switch protein FliM [Bordetella pertussis CS]
Length = 336
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 34/310 (10%), Positives = 94/310 (30%), Gaps = 9/310 (2%)
Query: 4 QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ R L+ + + + + + + + M + DI
Sbjct: 21 GESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + K++ + + + NLV ++++L G
Sbjct: 81 TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R +T E+++ +R + + K + +NE
Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238
V ++ + +P + + + E + R+
Sbjct: 199 VVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQRQVRSA 258
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
++++ +++ +++ +K G V+P +G + C G Y +
Sbjct: 259 DIDLVAEFGHIPSSIGELMRMKTGDVLPIAVP--ETVTAHVDGVPLMECGYGVFNGRYAL 316
Query: 299 RITDRINFDQ 308
R+ + IN+D
Sbjct: 317 RVQNLINYDD 326
>gi|300693352|ref|YP_003749325.1| flagellar motor switching and energizing component [Ralstonia
solanacearum PSI07]
gi|299075389|emb|CBJ34684.1| flagellar motor switching and energizing component [Ralstonia
solanacearum PSI07]
Length = 335
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 91/276 (32%), Gaps = 5/276 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + + + +IS + K+S I + + +
Sbjct: 50 RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
NL+ ++++L G ++ R + VE+++ +R + + +
Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFDHYGKAW 169
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
E + + NE V + + +M + + + +P +
Sbjct: 170 QPIYPIE--FEALRMEMHTEFANVATPNEVVVSTSFSMELGSNGGDVHVCMPYTMIEPIR 227
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ S+ Q ++ + + +++ V + + + D++ +K+G VIP
Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVELVAHLANANVQVSDILNMKVGDVIPLEL 287
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+G + C G Y +R+ +N
Sbjct: 288 --DDSVTAKVDGVPVMECAYGTFNGQYALRVNRMLN 321
>gi|332305666|ref|YP_004433517.1| flagellar motor switch protein FliM [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172995|gb|AEE22249.1| flagellar motor switch protein FliM [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 352
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 11/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ R+ + + + + M ++S Q
Sbjct: 31 DGSALEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGIQ 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF IH+ + I LV L++N G ++ R
Sbjct: 85 MIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + I + + + + E E V +
Sbjct: 145 FTPTERRIIQMLLKLIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ ++ F + +P L + + Q+ E+ + + V + T
Sbjct: 203 HIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTH 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ +L+ ++ +K G +IP + + +LGR N ++ITD+I
Sbjct: 263 MMDLTLSLQKIMDMKAGDIIPIDMP--EHITVMIEELPTFRAKLGRSRDNLALKITDKIP 320
Query: 306 F 306
Sbjct: 321 R 321
>gi|295098287|emb|CBK87377.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 334
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + N P P R+ + + + + + + DI+
Sbjct: 28 GLTGDDNIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ + R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 261 LVANFADISMRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTINGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|311068153|ref|YP_003973076.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
gi|310868670|gb|ADP32145.1| flagellar motor switch protein FliM [Bacillus atrophaeus 1942]
Length = 332
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 38/313 (12%), Positives = 101/313 (32%), Gaps = 14/313 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + + L F ++ + I
Sbjct: 28 LKKEDSEKKVKVYDFKRALRF------SKDQIRSLTRIHDNFARLLTTHFSAQLRTYIHI 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S +S + I S + + + + + + +++ ++G +
Sbjct: 82 SVSSVDQVPYEEFIRSIPNMTILNLFDVHPMEGRIMMEVNPTVAYAMMDRVMGGIGISHN 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ + L+ +E K+ + + + P E + NE
Sbjct: 142 KVDS--LTEIETKIISNLFENALGNYKEAWQSIADIEP--EMTEFEVNPQFVQMVSPNET 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I++N I ++ L IP L Q++ + ++
Sbjct: 198 VVVISLNTQIGEISGVINLCIPHVVLEPIIPKLSVHYWMQSERNEPKPEETKSLEKRIMT 257
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + + + T+++ ++L++G I + K + + GRV +
Sbjct: 258 AQIPVVAELGTSELTIEEFLSLEVGDCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQA 317
Query: 298 IRITDR-INFDQK 309
++I D I ++
Sbjct: 318 VQILDHDIRGEKD 330
>gi|163801852|ref|ZP_02195749.1| flagellar motor switch protein M [Vibrio sp. AND4]
gi|159174360|gb|EDP59164.1| flagellar motor switch protein M [Vibrio sp. AND4]
Length = 348
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 11/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+NT+ R+ + + + + + ++S Q
Sbjct: 31 DENTTNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF ++ + I LV L+EN G ++ R
Sbjct: 85 MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + + + S E E + +
Sbjct: 145 FTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ ++ F +++P + + + Q+ + VN
Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVN 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ K +L+D++ L+ G VIP E A + Y ++GR +++++ I
Sbjct: 263 LLEKDISLRDLMELQPGDVIPIDMPEN--ATMFIEDLPTYRVKMGRSEDKLAVQVSEEIE 320
Query: 306 F 306
Sbjct: 321 R 321
>gi|317406219|gb|EFV86466.1| flagellar motor switch protein [Achromobacter xylosoxidans C54]
Length = 335
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 34/307 (11%), Positives = 100/307 (32%), Gaps = 6/307 (1%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S ++ P L+ + + + + + + + M DI+ S
Sbjct: 25 SKKESAGPNDGARAYDLSSPDRVVRRRMQTLELINERFARQMRSVLLNFMRRSADITVGS 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K++ + + + NLV ++++L G ++
Sbjct: 85 IKIQKYADFERNLPVPSNLNMVQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEG 144
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R +T E+++ +R + + + K + +NE V
Sbjct: 145 RDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFDYVRSEMHT--KFASITGNNEVVVVT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNI 242
+ ++ + +P + + ++ E + +R+ ++++
Sbjct: 203 SFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQVRSADIDV 262
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+++++++ +K+G ++P I +G + C G Y +R+ +
Sbjct: 263 VAEFARIPSSIRELMRMKVGDILPVDVP--QTVIAHVDGVPLMECGYGVFNGQYALRVQN 320
Query: 303 RINFDQK 309
D +
Sbjct: 321 MFTHDTE 327
>gi|109899345|ref|YP_662600.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
T6c]
gi|109701626|gb|ABG41546.1| flagellar motor switch protein FliM [Pseudoalteromonas atlantica
T6c]
Length = 352
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 11/296 (3%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
R+ + + + + M ++S Q KF
Sbjct: 36 EYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGIQMIKFG 89
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
IH+ + I LV L++N G ++ R + E
Sbjct: 90 EYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGREFTPTE 149
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
+++ + + I + + + + E E V + ++ ++
Sbjct: 150 RRIIQMLLKLIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISSFHIELD 207
Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
F + +P L + + Q+ E+ + + V + T +
Sbjct: 208 GGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVELSTHMMDLT 267
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+ ++ +K G +IP + + +LGR N ++ITD+I
Sbjct: 268 LSLQKIMDMKAGDIIPIDMP--EHITVMIEELPTFRAKLGRSRDNLALKITDKIPR 321
>gi|149182515|ref|ZP_01860988.1| flagellar motor switch protein M [Bacillus sp. SG-1]
gi|148849775|gb|EDL63952.1| flagellar motor switch protein M [Bacillus sp. SG-1]
Length = 332
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V I+ S F + S + + +
Sbjct: 49 SKDQIRSLTRIHENFARILTTYFSAQLRTYVQITVVSADQVPFEEFVRSVPKMTILNIFD 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N+ +++ ++G I ++ N L+ +E K+ + L
Sbjct: 109 VPPLDGHILMEVNPNIGYAMMDRVMGGKGTGINKIEN--LTEIETKIMSNLFERAFDNLR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S E P L + NE V I+MN TI + +IIP L
Sbjct: 167 DAWSNIAEIDPMLS--EFEVNPQFLQMVSPNETVVVISMNTTIGETSGMINIIIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q K+++ + ++ V I + T+ D + L IG V
Sbjct: 225 PIIPKLSVSYWMQTKNKDIDPQETEMLEKRIKTAQVPIVAELGDSDITIDDFLMLDIGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I R + ++ + G + K ++I D + ++
Sbjct: 285 IQLNKRIDAPLTIKVGEIPKFTAQPGELNKRLAVQILDSLKGGEE 329
>gi|156933435|ref|YP_001437351.1| flagellar motor switch protein FliM [Cronobacter sakazakii ATCC
BAA-894]
gi|156531689|gb|ABU76515.1| hypothetical protein ESA_01253 [Cronobacter sakazakii ATCC BAA-894]
Length = 334
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 92/301 (30%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 31 DGDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L S +LV ++NL G ++ R
Sbjct: 85 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + N N+ V
Sbjct: 145 FTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + +P + + ++ + S + ++ D R+ + +
Sbjct: 204 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQNWRDTLVRQVQHSELELIAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ LK G V+P ++ +G + + + G V Y +R+ IN
Sbjct: 264 FAEIPLRLSKILKLKPGDVLPIDKP--DRILVHVDGVPVLTSQYGTVNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|207728361|ref|YP_002256755.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2]
gi|206591607|emb|CAQ57219.1| flagellar motor switch protein flim [Ralstonia solanacearum MolK2]
Length = 335
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 37/303 (12%), Positives = 96/303 (31%), Gaps = 11/303 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q+ + R+ + + + + + +IS
Sbjct: 29 QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S I + + + NL+ ++++L G ++
Sbjct: 83 PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + VE+++ +R +A + + E + + NE V +
Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+M + + + +P + + S+ Q ++ + + +++ V +
Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + D++ +K+G VIP +G + C G Y +R+
Sbjct: 261 VAHLANANVHVSDILNMKVGDVIPLEL--DDSVTARVDGVPVMECAYGTFNGQYALRVNR 318
Query: 303 RIN 305
+N
Sbjct: 319 MLN 321
>gi|307131596|ref|YP_003883612.1| flagellar motor switch protein fliM [Dickeya dadantii 3937]
gi|306529125|gb|ADM99055.1| Flagellar motor switch protein fliM [Dickeya dadantii 3937]
Length = 338
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 16/316 (5%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P P R+ + + + + + + DI+ +
Sbjct: 32 QKDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L S +LV ++NL G ++
Sbjct: 86 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + + + + N N+ V T
Sbjct: 146 REFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I + F + IP + + + + S+ + + + A++ + +
Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L V+ LK G ++P + +G + +C+ G + Y +R+
Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322
Query: 304 INF------DQKSLKN 313
IN D++ L
Sbjct: 323 INPILNSLNDEEPLNE 338
>gi|299534775|ref|ZP_07048105.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
gi|298729863|gb|EFI70408.1| flagellar motor switch protein FliM [Lysinibacillus fusiformis ZC1]
Length = 331
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 48/285 (16%), Positives = 102/285 (35%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V I+ S F + S + +
Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + N+ ++L+ L+G S + + N L+ +E K+ + L
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRLMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P L + NE V I++N I + + IP L
Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q ++ S + + Q + + + L T++D +T+++G V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAQLPLSVELGLTDITIEDFLTMQVGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + + +L ++ + G+ GK I+I D + +
Sbjct: 285 IQLDQKIEAPLLLKVGTLPKFTVQPGKKGKKLAIQIIDPLKGGDE 329
>gi|312876509|ref|ZP_07736492.1| flagellar motor switch protein FliM [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796720|gb|EFR13066.1| flagellar motor switch protein FliM [Caldicellulosiruptor
lactoaceticus 6A]
Length = 329
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 13/305 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
KN ++ K + + Y + + + V + S +
Sbjct: 33 EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ +S V + S + + L +++ +LG + I ++ R+
Sbjct: 87 QLTYYEFSNSLSNPVVMGVVNFSPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RT 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E L +R + Q+ + P +E + NE V + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIIHIRPRIEKIET--NPQFTQIVSPNETVALVTI 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
M + + +P + ++ SE+ + +K + V +
Sbjct: 203 TMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + T+++ + L++G V+ R+ + K + GR ++IT
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322
Query: 304 INFDQ 308
+
Sbjct: 323 EEGED 327
>gi|292669771|ref|ZP_06603197.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
gi|292648568|gb|EFF66540.1| flagellar motor switch protein FliM [Selenomonas noxia ATCC 43541]
Length = 333
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + + L + +DI S + + + S V +
Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRAMIDIEVMSVEQMTYQEFVQSMGNPSVIGIIA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L N I ++ ++ + G + + +R+L+ +E + +R I +
Sbjct: 109 LPPLKGNIIIEVGTDIAFAYIDRIFGGEGKPGVK--SRALTDIEAAVMRRFIDTVINYFR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E PN E + ++ V I +++ + +V + IP L
Sbjct: 167 EAWSNVIEFRPNFETMET--NPQFAQIVPPSDMVVLITIHVKMGDVEGMMNVCIPYLVLE 224
Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S + + + + + RK + V + T+ + +TL G
Sbjct: 225 PVMSKLTTSFWVASSVDKESTPEQVAELQRKIERTWVPFSVELGSVDITINEFLTLGFGD 284
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V+ + + + G GK ++I+ I D
Sbjct: 285 VLQLDTLAQDELVCYVGTNPKFRAHPGTAGKRMAVQISGIIEGDDD 330
>gi|227112534|ref|ZP_03826190.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 337
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 41/310 (13%), Positives = 97/310 (31%), Gaps = 10/310 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P P R+ + + + + + + DI+ +
Sbjct: 31 QVDGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L S +LV ++NL G ++
Sbjct: 85 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 144
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ KR + + + + + N N+ V T
Sbjct: 145 REFTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTT 203
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I ++ F + IP + + + + S + + D A++ + +
Sbjct: 204 PFHVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELV 263
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L+ G V+P + +G + + + G + Y +R+
Sbjct: 264 ASFVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHL 321
Query: 304 INFDQKSLKN 313
IN SL N
Sbjct: 322 INPILNSLDN 331
>gi|26248214|ref|NP_754254.1| flagellar motor switch protein FliM [Escherichia coli CFT073]
gi|91211163|ref|YP_541149.1| flagellar motor switch protein FliM [Escherichia coli UTI89]
gi|110642051|ref|YP_669781.1| flagellar motor switch protein FliM [Escherichia coli 536]
gi|117624085|ref|YP_852998.1| flagellar motor switch protein FliM [Escherichia coli APEC O1]
gi|237705904|ref|ZP_04536385.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA]
gi|331642566|ref|ZP_08343701.1| flagellar motor switch protein FliM [Escherichia coli H736]
gi|331647539|ref|ZP_08348631.1| flagellar motor switch protein FliM [Escherichia coli M605]
gi|331653357|ref|ZP_08354362.1| flagellar motor switch protein FliM [Escherichia coli M718]
gi|331673458|ref|ZP_08374226.1| flagellar motor switch protein FliM [Escherichia coli TA280]
gi|331677827|ref|ZP_08378502.1| flagellar motor switch protein FliM [Escherichia coli H591]
gi|332278888|ref|ZP_08391301.1| flagellar motor switch protein FliM [Shigella sp. D9]
gi|26108618|gb|AAN80821.1|AE016762_74 Flagellar motor switch protein fliM [Escherichia coli CFT073]
gi|91072737|gb|ABE07618.1| flagellar motor switch protein FliM [Escherichia coli UTI89]
gi|110343643|gb|ABG69880.1| flagellar motor switch protein FliM [Escherichia coli 536]
gi|115513209|gb|ABJ01284.1| Flagellar motor switch protein [Escherichia coli APEC O1]
gi|226900661|gb|EEH86920.1| flagellar motor switch protein FliM [Escherichia sp. 3_2_53FAA]
gi|331039364|gb|EGI11584.1| flagellar motor switch protein FliM [Escherichia coli H736]
gi|331043263|gb|EGI15401.1| flagellar motor switch protein FliM [Escherichia coli M605]
gi|331049455|gb|EGI21527.1| flagellar motor switch protein FliM [Escherichia coli M718]
gi|331069656|gb|EGI41043.1| flagellar motor switch protein FliM [Escherichia coli TA280]
gi|331074287|gb|EGI45607.1| flagellar motor switch protein FliM [Escherichia coli H591]
gi|332101240|gb|EGJ04586.1| flagellar motor switch protein FliM [Shigella sp. D9]
Length = 349
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 45 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 217
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335
Query: 304 INF 306
IN
Sbjct: 336 INP 338
>gi|302389672|ref|YP_003825493.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
DSM 16646]
gi|302200300|gb|ADL07870.1| flagellar motor switch protein FliM [Thermosediminibacter oceani
DSM 16646]
Length = 331
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ ++ K + K + + + L F ++ V I
Sbjct: 27 IKKEANEKKIKVYDFKKPNKF------SKEQLNTLHLIHENFSRQLITFFSTQLRTLVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ +S +S I S + I + ++ ++++ LLG S E
Sbjct: 81 NASSVDQMPYSEFISSIPNPSIIGIVDFQPLRGAIIIAMNVSMAFSIIDRLLGGSGEYKD 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R + +E + R +++ ++ + E P + + NE
Sbjct: 141 KP--REPTEIEANILHRVYSKLVKLMQEAWQDILEIHPVFDKLET--NPQFVQLVSPNEA 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I +N I + IP + N + E I RK
Sbjct: 197 VALITINTRIGKTDGLINICIPYIVIEPVMSRLSTKIWLSNSKKESPESFIKTITRKLEN 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+N I I K T+++ + L +G VI + + K Y +G+ +
Sbjct: 257 VNAEIRAEIGKAKITVREFLDLDVGDVIQLDKHINSEVDVYVYDKLKYKGIMGKRNGRFA 316
Query: 298 IRITDRINFDQK 309
+RI I+ +
Sbjct: 317 VRINKVISERDE 328
>gi|90411030|ref|ZP_01219044.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
gi|90328243|gb|EAS44554.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
Length = 348
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 36/304 (11%), Positives = 92/304 (30%), Gaps = 11/304 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
S R+ + + + + + ++S
Sbjct: 29 SETGISSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 82
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF ++ + I LV L+EN G ++ R
Sbjct: 83 QMIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGR 142
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + + + S E E + +
Sbjct: 143 EFTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSS 200
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F +++P + + + Q+ ++ + + VN+
Sbjct: 201 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRA 260
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ +L+D++ L+ G +IP A + Y ++G+ G N ++IT ++
Sbjct: 261 KLLDVDLSLRDLMELQAGDIIPIDVP--ESATVFVEDLPTYRAKMGKSGDNIALKITQKL 318
Query: 305 NFDQ 308
Sbjct: 319 KRPD 322
>gi|300696948|ref|YP_003747609.1| flagellar motor switching and energizing component [Ralstonia
solanacearum CFBP2957]
gi|299073672|emb|CBJ53192.1| flagellar motor switching and energizing component [Ralstonia
solanacearum CFBP2957]
Length = 335
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 37/303 (12%), Positives = 96/303 (31%), Gaps = 11/303 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q+ + R+ + + + + + +IS
Sbjct: 29 QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S I + + + NL+ ++++L G ++
Sbjct: 83 PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + VE+++ +R +A + + E + + NE V +
Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+M + + + +P + + S+ Q ++ + + +++ V +
Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + D++ +K+G VIP +G + C G Y +R+
Sbjct: 261 VAHLANANVHVSDILNMKVGDVIPLEL--DDFVTARVDGVPVMECAYGTFNGQYALRVNR 318
Query: 303 RIN 305
+N
Sbjct: 319 MLN 321
>gi|110805914|ref|YP_689434.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401]
gi|110615462|gb|ABF04129.1| flagellar motor switch protein FliM [Shigella flexneri 5 str. 8401]
Length = 349
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 45 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 217
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I NG + + + G + Y +RI
Sbjct: 278 ANFADISLHLSQILKLKPGDVLPIEKP--DRIIAHVNGVPVLTSQYGTLNGQYALRIEHL 335
Query: 304 INF 306
IN
Sbjct: 336 INP 338
>gi|312621580|ref|YP_004023193.1| flagellar motor switch protein flim [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202047|gb|ADQ45374.1| flagellar motor switch protein FliM [Caldicellulosiruptor
kronotskyensis 2002]
Length = 329
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 98/305 (32%), Gaps = 13/305 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
KN ++ K + + Y + + + V + S +
Sbjct: 33 EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ +S V + S + + + +++ +LG + I ++ R+
Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E L +R + Q+ + + P LE + NE V + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
M + + IP + ++ SE+ + +K + V +
Sbjct: 203 AMKVGEAEGMANICIPHMVIEPIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVK 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + T+++ + L++G V+ R+ + K + GR ++IT
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322
Query: 304 INFDQ 308
+
Sbjct: 323 EEGED 327
>gi|283832660|ref|ZP_06352401.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC
29220]
gi|291072334|gb|EFE10443.1| flagellar motor switch protein FliM [Citrobacter youngae ATCC
29220]
Length = 334
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 40/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G + + P P R+ + + + + + + DI
Sbjct: 26 ISGIAKESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + + + + L + S +LV ++NL G
Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ R + + + N N+
Sbjct: 140 KVEGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239
V ++ I N+ F + +P + + ++ + S N+ ++ + R+
Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRNNLVRQVQHSE 258
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + L ++ LK G V+P I +G + + + G V Y +R
Sbjct: 259 LELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALR 316
Query: 300 ITDRINF 306
+ IN
Sbjct: 317 VEHLINP 323
>gi|285018173|ref|YP_003375884.1| flagellar motor switch protein [Xanthomonas albilineans GPE PC73]
gi|283473391|emb|CBA15896.1| probable flagellar motor switch protein [Xanthomonas albilineans]
Length = 335
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 91/299 (30%), Gaps = 11/299 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + + + D+S
Sbjct: 33 EARQYDFSSQDRIIRG------RMPTLEMVNERFARLCRIGLFNLIRRSADLSVRGIDLV 86
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF+ +HS + I LV T+++N G ++ R +
Sbjct: 87 KFNDYMHSLYVPSNLNLIKFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRYPTRIEGREFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q A L++ + E E+V ++
Sbjct: 147 PTEMRVIQLMLKQTFADLHEAWAPVMNVE--FEYLNSEVNPHFANIVTPREYVVVSRFHV 204
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+E + +P L + + Q+ ++ E + Y V I + +
Sbjct: 205 ELEGGGGEIHVTLPYSMLEPIRELLDAGIQSDRVDRDESWNIMLREQLYGSEVTISSVLA 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
K+ +L+++ L+IG ++P ++ L +++ E G ++IT
Sbjct: 265 QKEMSLRELTRLRIGDILPIDLPKQVP--LCVENIPVFTGEFGVSQGQNAVKITATHPP 321
>gi|238755314|ref|ZP_04616657.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473]
gi|238706450|gb|EEP98824.1| Flagellar motor switch protein fliM [Yersinia ruckeri ATCC 29473]
Length = 334
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 87/301 (28%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 DSDVKPYDPTTQRRVV------RERLHALEIINERFARHFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L +LV ++NL G ++ R
Sbjct: 85 IQPYHEFARNLPVPTNLNLVHLKPLRGTALFVFEPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + I N N+ V T
Sbjct: 145 FTHTEQRVITRMLRLALDAYRDAWGAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + + S + + + ++ + +
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSNWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ LK G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FAEIPLRLSQILKLKPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|86146129|ref|ZP_01064455.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|218708830|ref|YP_002416451.1| flagellar motor switch protein FliM [Vibrio splendidus LGP32]
gi|85836076|gb|EAQ54208.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|218321849|emb|CAV17824.1| Flagellar motor switch protein fliM [Vibrio splendidus LGP32]
Length = 347
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 93/304 (30%), Gaps = 11/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ NT R+ + + + + + ++S
Sbjct: 28 ETESDNTVNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSIN 81
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF ++ + I LV L+EN G ++
Sbjct: 82 GVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIE 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + S E E +
Sbjct: 142 GREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVV 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+ ++ ++ F +++P + + + Q+ + + VN
Sbjct: 200 SSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALRDEIMDVPVNF 259
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + +L+D++ L+ G VIP A + Y ++GR G+ ++I++
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISE 317
Query: 303 RINF 306
+I
Sbjct: 318 KIER 321
>gi|218549270|ref|YP_002383061.1| flagellar motor switch protein FliM [Escherichia fergusonii ATCC
35469]
gi|218356811|emb|CAQ89439.1| flagellar motor switching and energizing component [Escherichia
fergusonii ATCC 35469]
gi|324114212|gb|EGC08185.1| flagellar motor switch protein FliM [Escherichia fergusonii B253]
gi|325497687|gb|EGC95546.1| flagellar motor switch protein FliM [Escherichia fergusonii ECD227]
Length = 334
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 39/307 (12%), Positives = 94/307 (30%), Gaps = 10/307 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G + + P P R+ + + + + + + DI
Sbjct: 26 ISGITNESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + + + + L + S LV ++NL G
Sbjct: 80 TVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPALVFIAVDNLFGGDGRFPT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E+++ R + + N N+
Sbjct: 140 KVEGREFTHTEQRVINRMLKLALEGYRDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDI 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLN 239
V ++ I N+ F + +P + + ++ + S ++ ++ + R+
Sbjct: 199 VVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRNNLVRQVQHSQ 258
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + L ++ LK G V+P I +G + + + G + Y +R
Sbjct: 259 LELVANFAEISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALR 316
Query: 300 ITDRINF 306
I IN
Sbjct: 317 IEHLINP 323
>gi|293607830|ref|ZP_06690150.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC
43553]
gi|292813773|gb|EFF72934.1| flagellar motor switch protein FliM [Achromobacter piechaudii ATCC
43553]
Length = 335
Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 96/304 (31%), Gaps = 12/304 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
R+ + + + + + + + M DI+ S +
Sbjct: 34 DGARAYDLSSPERVV------RRRMQTLELINERFARHMRNVLLNFMRRSADITVGSIKI 87
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K++ + + + NLV ++++L G ++ R
Sbjct: 88 QKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDF 147
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+T E+++ +R + + K + +NE V + +
Sbjct: 148 TTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEVVVVTSFH 205
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLNVNIDTR 245
+ + +P + + ++ E + +R+ ++++
Sbjct: 206 IEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWSQQLSRQVRSADIDVVAE 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+++++++ LK+G V+P I + +G + C G Y +R+ +
Sbjct: 266 FARIPSSIRELMHLKVGDVLPVDVP--ETIIANVDGVPLMECGYGVFNGQYALRVQNMFT 323
Query: 306 FDQK 309
+D
Sbjct: 324 YDTD 327
>gi|312792659|ref|YP_004025582.1| flagellar motor switch protein flim [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179799|gb|ADQ39969.1| flagellar motor switch protein FliM [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 329
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 97/305 (31%), Gaps = 13/305 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
KN ++ K + + Y + + + V + S +
Sbjct: 33 EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ +S V + S + + L +++ +LG + I ++ R+
Sbjct: 87 QLTYYEFSNSLSNPVVMGVVNFSPLKGSIVFEMAPELAFAMIDRVLGGFGKGIDKV--RT 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E L +R + Q+ + P +E + NE V + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIIHIRPRIEKIET--NPQFTQIVSPNETVALVTI 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
M + + +P + ++ SE+ + +K + V +
Sbjct: 203 AMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + T+++ + L++G V+ R+ + K + GR ++IT
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322
Query: 304 INFDQ 308
+
Sbjct: 323 EEGED 327
>gi|308068664|ref|YP_003870269.1| flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
gi|305857943|gb|ADM69731.1| Flagellar motor switch protein fliM [Paenibacillus polymyxa E681]
Length = 331
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + ++L F ++ V I
Sbjct: 26 LKKEDTQKKVRAYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I S + + + + N+ +L+ LLG +
Sbjct: 80 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPS 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ +L+ +E + +R ++ L + T + P LE + NE
Sbjct: 140 KVA--ALTEIETTIMERIFSRTFDSLQEAWKTVLDIEPRLEAMET--NPQFMQIVSPNET 195
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + L IP L ++ ++++ + ID + +
Sbjct: 196 IALISLSTKIGDTTGMINLCIPHVVLEPIMARLSTHQWFTSEKKSRAPEEIDALRLRVTK 255
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + + + + + L +G VI K + K + G V
Sbjct: 256 AELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVA 315
Query: 298 IRITDRINFDQKSLKN 313
++I + +N + +
Sbjct: 316 VQIDEIVNEGVEEIDE 331
>gi|114562367|ref|YP_749880.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
400]
gi|114333660|gb|ABI71042.1| flagellar motor switch protein FliM [Shewanella frigidimarina NCIMB
400]
Length = 342
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M ++S Q
Sbjct: 31 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + S I LV L++N G ++ R +
Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + E E V + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVINSFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ ++ + + V D +
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDVNVV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TL+DV+ K G +IP ++ G Y C++G+ N ++I+++I
Sbjct: 263 EHEVTLRDVMGFKAGDIIPIDLP--EHIMMRIEGLPTYRCKMGKSRDNLALKISEKIPRP 320
Query: 308 Q 308
+
Sbjct: 321 E 321
>gi|271500079|ref|YP_003333104.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586]
gi|270343634|gb|ACZ76399.1| flagellar motor switch protein FliM [Dickeya dadantii Ech586]
Length = 338
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 40/316 (12%), Positives = 99/316 (31%), Gaps = 16/316 (5%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P P R+ + + + + + + DI+ +
Sbjct: 32 QKDGDVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGA 85
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L S +LV ++NL G ++
Sbjct: 86 IKIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEG 145
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + + + + N N+ V T
Sbjct: 146 REFTHTEQRVVRRMLKLALESYSDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIVVTT 204
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I + F + IP + + + + S+ + + + A++ + +
Sbjct: 205 PFHLEIGTLTGEFSICIPFSMIEPLRELLANPPLENSQQEDQHWRETLAKQVQHSELELV 264
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L V+ LK G ++P + +G + +C+ G + Y +R+
Sbjct: 265 ANFVDIPVRLSKVLKLKPGDILPIDKP--ERLVAHVDGVPVLTCQYGTLDGQYALRVEHL 322
Query: 304 INF------DQKSLKN 313
IN D++ L
Sbjct: 323 INPILNSLNDEEPLNE 338
>gi|169827132|ref|YP_001697290.1| flagellar motor switch protein FliM [Lysinibacillus sphaericus
C3-41]
gi|168991620|gb|ACA39160.1| Flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
Length = 331
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V I+ S F + S + +
Sbjct: 49 SKDQIRSLTRIHENFARLLTTFFSAQLRSYVQITVASVDQIPFEEFVRSIPNMTLINVFE 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + N+ ++L+ ++G S + + N L+ +E K+ + L
Sbjct: 109 VPPLDGNILMEINPNIAYSMLDRIMGGSGASHSNVDN--LTEIETKIMTNLFERSFDNLR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P L + NE V I++N I + + IP L
Sbjct: 167 EAWENVAEIDPILV--ELEVNPQFLQMISPNETVVVISLNTIIGETSGMINICIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q ++ S + + Q + + + L T++D +T++IG V
Sbjct: 225 PIVPNLSVRYWMQTNTKEMSPEQTKMLETRVKQAKLPLSVELGLTDITIEDFLTMQIGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + +L ++ + G+ GK I+I D + +
Sbjct: 285 IQLEQKINDPLLLKVGTLPKFTVQPGKQGKKLAIQIIDPLKGGDE 329
>gi|222530127|ref|YP_002574009.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
DSM 6725]
gi|222456974|gb|ACM61236.1| flagellar motor switch protein FliM [Caldicellulosiruptor bescii
DSM 6725]
Length = 329
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 98/305 (32%), Gaps = 13/305 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
KN ++ K + + Y + + + V + S +
Sbjct: 33 EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDILSVE 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ +S V + S + + + +++ +LG + I ++ R+
Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E L +R + Q+ + + P LE + NE V + +
Sbjct: 145 FTEIELALIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
M + + +P + ++ SE+ + +K + V +
Sbjct: 203 AMKVGEAEGMANICLPHMVIEPIMPRLSTKFWFSTSAKESSEETKEYLQKKIERTRVTVK 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + T+++ + L++G V+ R+ + K + GR ++IT
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322
Query: 304 INFDQ 308
+
Sbjct: 323 EEGED 327
>gi|54308123|ref|YP_129143.1| flagellar motor switch protein FliM [Photobacterium profundum SS9]
gi|46912549|emb|CAG19341.1| Putative flagellar motor switch protein FliM [Photobacterium
profundum SS9]
Length = 348
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 92/303 (30%), Gaps = 11/303 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ R+ + + + + + ++S Q
Sbjct: 30 ETGITSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 83
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF ++ + I LV L+EN G ++ R
Sbjct: 84 MIKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 143
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + + + S E E + +
Sbjct: 144 FTPTERRIVQMLLKLVFEDYREAWSPVMGVE--FEYLDSEVNPTMANIVSPTEVIVVSSF 201
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ ++ F +++P + + + Q+ ++ + + VN+ +
Sbjct: 202 HIELDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMDKDVRWSMALREEIMDVPVNLRAK 261
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ +L+D++ L+ G +IP A + Y ++G+ G N ++IT ++
Sbjct: 262 LLDVDLSLRDLMELQAGDIIPIDVP--ESATVFVEDLPTYRAKMGKSGDNIALKITQKLK 319
Query: 306 FDQ 308
Sbjct: 320 RPD 322
>gi|146296292|ref|YP_001180063.1| flagellar motor switch protein FliM [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409868|gb|ABP66872.1| flagellar motor switch protein FliM [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 329
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 43/293 (14%), Positives = 99/293 (33%), Gaps = 8/293 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + Y + + + V + S + + +S
Sbjct: 40 DFKRPSKFAKDHLRTLQIIFENYSRIVTTFLSGYLRTVVQMDVISVEQLTYYEFSNSLSN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
V + + + S + +++ +LG + I ++ R+ + +E L +R +
Sbjct: 100 PVVMGIVNFAPLKGSIVFEMSPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLL 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
Q+ + + P LE + NE V + ++M + V +
Sbjct: 158 QQLINYFQEAWENIVDLHPKLEKIET--NPQFTQIVSPNETVALVTIDMKVGEVEGMVNI 215
Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P + ++ SE+ + RK + V I + K T+++
Sbjct: 216 CLPHMVIEPIMPRLSTKYWFSTSAKETSEETKEYLQRKIEKTKVTIRAILGRTKITVREF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ L++G VI R+ + K + GR I++T R+ + +
Sbjct: 276 LELQVGDVIRLDRRKNQEIEVFVGDKLKFYGVPGRKEGRVAIKVT-RVEKEDE 327
>gi|281601385|gb|ADA74369.1| Flagellar motor switch protein FliM [Shigella flexneri 2002017]
Length = 349
Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 45 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 98
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 99 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 158
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 159 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 217
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 218 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 277
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 278 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 335
Query: 304 INF 306
IN
Sbjct: 336 INP 338
>gi|227328351|ref|ZP_03832375.1| flagellar motor switch protein FliM [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 337
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 41/308 (13%), Positives = 96/308 (31%), Gaps = 10/308 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P P R+ + + + + + + DI+ + +
Sbjct: 33 DGGVKPYDPNTQRRVI------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIK 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L S +LV ++NL G ++ R
Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ KR + + + + + N N+ V T
Sbjct: 147 FTHTEQRVVKRMLRLALEAYGEAWNAIYKLDIEYVRSE-MQVKFTNITTSPNDIVVTTPF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + + S + + D A++ + +
Sbjct: 206 HVEIGSLTGEFNICIPFSMIEPLRELLANPPLENSRQEDQSWRDTLAKQVQHSELELVAS 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P + +G + + + G + Y +R+ IN
Sbjct: 266 FVDIPLRLSKILKLQPGDVLPIDKP--DKIVAHVDGVPVLTSQYGTLNGQYALRVEHLIN 323
Query: 306 FDQKSLKN 313
SL N
Sbjct: 324 PILNSLDN 331
>gi|304404256|ref|ZP_07385918.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
YK9]
gi|304347234|gb|EFM13066.1| flagellar motor switch protein FliM [Paenibacillus curdlanolyticus
YK9]
Length = 333
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 39/312 (12%), Positives = 103/312 (33%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + ++L F ++ V I
Sbjct: 27 LKKEDTQKKVRAYDFKRAVRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + I S + + + + N+ +L+ LLG
Sbjct: 81 SVVDVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVMEVHPNVAYAMLDRLLGGQGTAPS 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ +L+ +E + +R ++ L + T + SP LE + NE
Sbjct: 141 KMN--ALTEIEMTVLERIFSRAFESLQEAWKTVIDISPKLEALET--NPQFMQIVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + L IP + ++ +++S + ++ ++ +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPKLSVHHWFVSQKKSRSPEEVEVLEQRVNR 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + + + + L G VI + K + G +
Sbjct: 257 AQLPIAVELGESVINVHEFLNLMQGDVITLNKPVGEGLNIKVGNKIKFIGSPGSIKDRVA 316
Query: 298 IRITDRINFDQK 309
+++ + ++ +
Sbjct: 317 VQVDEIVSEGVE 328
>gi|160876170|ref|YP_001555486.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
gi|160861692|gb|ABX50226.1| flagellar motor switch protein FliM [Shewanella baltica OS195]
gi|315268366|gb|ADT95219.1| flagellar motor switch protein FliM [Shewanella baltica OS678]
Length = 342
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
++ ++ R+ + + + L M ++S
Sbjct: 27 AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +H+ + S I LV L++N G ++
Sbjct: 81 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + I + + + E V
Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F + +P + + + Q+ ++ + + V D
Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
I + TLKDV+ K G +IP ++ Y C++GR N ++I ++
Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIHEK 316
Query: 304 INFDQ 308
I +
Sbjct: 317 IPRPE 321
>gi|157145261|ref|YP_001452580.1| flagellar motor switch protein FliM [Citrobacter koseri ATCC
BAA-895]
gi|157082466|gb|ABV12144.1| hypothetical protein CKO_00998 [Citrobacter koseri ATCC BAA-895]
Length = 334
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 94/305 (30%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + P P R+ + + + + + + DI+
Sbjct: 28 GGVGDNDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|16078694|ref|NP_389513.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309509|ref|ZP_03591356.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313833|ref|ZP_03595638.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318756|ref|ZP_03600050.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323028|ref|ZP_03604322.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296330846|ref|ZP_06873321.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674364|ref|YP_003866036.1| flagellar motor switching and energizing protein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|321315398|ref|YP_004207685.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
gi|120344|sp|P23453|FLIM_BACSU RecName: Full=Flagellar motor switch protein FliM
gi|142922|gb|AAA22446.1| flagellar switch protein [Bacillus subtilis]
gi|2634003|emb|CAB13504.1| flagellar motor switching and energizing component [Bacillus
subtilis subsp. subtilis str. 168]
gi|291484184|dbj|BAI85259.1| flagellar motor switch protein FliM [Bacillus subtilis subsp. natto
BEST195]
gi|296151851|gb|EFG92725.1| flagellar motor switch protein FliM [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412608|gb|ADM37727.1| flagellar motor switching and energizing component [Bacillus
subtilis subsp. spizizenii str. W23]
gi|320021672|gb|ADV96658.1| flagellar motor switch protein FliM [Bacillus subtilis BSn5]
Length = 332
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ + IS +S + I S + +
Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAQLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + T+++ ++G + ++ + L+ +E K+
Sbjct: 109 VHPMEGRIMMEVNPTIAYTMMDRVMGGIGISHNKVDS--LTEIETKIISNLFENALGNYK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P E + NE V I++N I ++ L IP L
Sbjct: 167 EAWQSIADIEP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHIVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + ++ + + + + T+++ ++L++G
Sbjct: 225 PLIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVGDC 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
I + K + + GRV + ++I D I +Q
Sbjct: 285 ITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 330
>gi|17548599|ref|NP_521939.1| flagellar motor switch protein FliM [Ralstonia solanacearum
GMI1000]
gi|17430847|emb|CAD17529.1| probable flagellar motor switch protein flim [Ralstonia
solanacearum GMI1000]
Length = 335
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 5/276 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + + + +IS + K+S I + + +
Sbjct: 50 RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
NL+ ++++L G ++ R + VE+++ +R + + +
Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAW 169
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
E + + NE V + +M + + + +P +
Sbjct: 170 QPIYPIE--FEPLRMEMHTEFANVATPNEVVVSTRFSMELGSNGGDVHVCMPYTMIEPIR 227
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ S+ Q ++ + + +++ V + + + D++ +K+G V+P
Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL 287
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+G + C G Y +R+ +N
Sbjct: 288 --DDSVTARVDGVPVMECAYGTFNGQYALRVNRMLN 321
>gi|260776477|ref|ZP_05885372.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607700|gb|EEX33965.1| flagellar motor switch protein FliM [Vibrio coralliilyticus ATCC
BAA-450]
Length = 351
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 93/307 (30%), Gaps = 11/307 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + R+ + + + + + ++S
Sbjct: 29 GAAADPSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSI 82
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF ++ + I LV L+EN G ++
Sbjct: 83 NGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARI 142
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + + + S E E +
Sbjct: 143 EGREFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F +++P + + + Q+ + + VN
Sbjct: 201 VSSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVN 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + +L+D++ L+ G +IP E A + + ++GR G+ ++++
Sbjct: 261 FRVNLLEQDISLRDLMELQPGDIIPITMPEN--ATMFVEELPTFRVKMGRSGEQLAVQVS 318
Query: 302 DRINFDQ 308
++I
Sbjct: 319 EKIKRPD 325
>gi|311279113|ref|YP_003941344.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1]
gi|308748308|gb|ADO48060.1| flagellar motor switch protein FliM [Enterobacter cloacae SCF1]
Length = 334
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 93/305 (30%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + P P R+ + + + + + + DI+
Sbjct: 28 GAGGETDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEAYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ + R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRSEDQNWRENLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 261 LVANFADISLRLSQILKLQPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|238927453|ref|ZP_04659213.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
43531]
gi|238884735|gb|EEQ48373.1| flagellar motor switch protein FliM [Selenomonas flueggei ATCC
43531]
Length = 333
Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + + L + +DI +S + + + S V +
Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRTMIDIDVSSVEQVTYQEFVQSMANPSVIGILA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L I + + ++ + G + R L+ +E + +R I +
Sbjct: 109 LPPLKGKIIIEINPGIAFAYIDRIFGGEGRPAVKT--RVLTDIEMAVMRRFIELATNYFR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E PN E + N+ V I +++ + +V + IP L
Sbjct: 167 EAWSNVVEFRPNFETMET--NSQFAQIVPPNDMVVLITIHIKMGDVDGMMNICIPYLVLE 224
Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S + S + ++ RK + +V ++ + T+ + +TL G
Sbjct: 225 PVMSKLTTSFWVAASMDRESSPEQVEELQRKIERTSVPFTVQLGEIEMTINEFLTLGFGD 284
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V+ K + + G GK ++I+ I +
Sbjct: 285 VLQLDTLTKDELVCYVGSNPKFLARPGTAGKRMAVQISGVIEGEDN 330
>gi|310641555|ref|YP_003946313.1| heat shock protein hslvu, atpase subunit hslu [Paenibacillus
polymyxa SC2]
gi|309246505|gb|ADO56072.1| Heat shock protein HslVU, ATPase subunit HslU [Paenibacillus
polymyxa SC2]
Length = 332
Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 43/316 (13%), Positives = 106/316 (33%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + ++L F ++ V I
Sbjct: 27 LKKEETQKKVRAYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I S + + + + N+ +L+ LLG +
Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRLLGGTGSAPT 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ +L+ +E + +R ++ L + T + P LE + NE
Sbjct: 141 KVT--ALTEIETTIMERIFSRTFDSLQEAWKTVLDIEPRLEAMET--NPQFMQIVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + L IP L ++ ++++ + ID + +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVLEPIMARLSTHQWFTSEKKSRAPEEIDALRLRVTK 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + + + + + L +G VI K + K + G V
Sbjct: 257 AELPIIAELGESRINVAEFLGLSVGDVISLNKPVKEGLSIRVGEKLKFMGSPGMVRDRVA 316
Query: 298 IRITDRINFDQKSLKN 313
++I + +N + +
Sbjct: 317 VQIDEIVNEGVEEIDE 332
>gi|163750543|ref|ZP_02157781.1| flagellar motor switch protein [Shewanella benthica KT99]
gi|161329698|gb|EDQ00687.1| flagellar motor switch protein [Shewanella benthica KT99]
Length = 348
Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
R+ + + + L M ++S Q
Sbjct: 36 SEARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQM 89
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF +H+ + S I LV L++N G ++ R
Sbjct: 90 IKFGEYVHTLFVPTSLNMVKFSPLKGTGLITMEARLVFILVDNFFGGDGRFHAKIEGREF 149
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + I + + + E E V + +
Sbjct: 150 TPTERRIVQLLLKIIFEDYKEAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSSFH 207
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ F + +P + + + Q+ +++ + + + V ID I
Sbjct: 208 IEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDKRWSMALKDEIMDIKVGIDATI 267
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++ LKDV+ + G +IP +L Y C+LG+ N +RI ++I
Sbjct: 268 VDQEIALKDVMKFRAGDIIPVDLP--EHIVLRVEDLPTYRCKLGKSRDNLALRIIEKIPR 325
Query: 307 DQ 308
+
Sbjct: 326 PK 327
>gi|83747640|ref|ZP_00944676.1| FliM [Ralstonia solanacearum UW551]
gi|207739721|ref|YP_002258114.1| flagellar motor switch protein flim [Ralstonia solanacearum
IPO1609]
gi|9438185|gb|AAF87587.1|AF283286_1 flagellar motor switch [Ralstonia solanacearum]
gi|83725692|gb|EAP72834.1| FliM [Ralstonia solanacearum UW551]
gi|206593103|emb|CAQ60009.1| flagellar motor switch protein flim [Ralstonia solanacearum
IPO1609]
Length = 335
Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 96/303 (31%), Gaps = 11/303 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q+ + R+ + + + + + +IS
Sbjct: 29 QAEAAGVRTYNLGSQERIVRG------RMPTLEIINERFARNWRMGLFNFLRRNAEISVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S I + + + NL+ ++++L G ++
Sbjct: 83 PVKVQKYSEFIRNLVVPAAINLVHVKPLRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + VE+++ +R +A + + E + + NE V +
Sbjct: 143 GRDFTQVEQRIIQRMLALMFEHYGKAWQPIYPIE--FEPLRMEMHTEFANVATPNEVVVS 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+M + + + +P + + S+ Q ++ + + +++ V +
Sbjct: 201 TRFSMELGSNGGDVHVCMPYTMIEPIRDLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEV 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + D++ +K+G V+P +G + C G Y +R+
Sbjct: 261 VAHLANANVHVSDILNMKVGDVVPLEL--DDFVTARVDGVPVMECAYGTFNGQYALRVNR 318
Query: 303 RIN 305
+N
Sbjct: 319 MLN 321
>gi|226313058|ref|YP_002772952.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
100599]
gi|226096006|dbj|BAH44448.1| flagellar motor switch protein FliM [Brevibacillus brevis NBRC
100599]
Length = 331
Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + + R K + + + Y + L F ++ V I
Sbjct: 27 LKKEETERKVKVYDFKRALRF------SKDQIRGLTRIHENYARLLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ S + I S + + + + + N+ T+L+ LLG
Sbjct: 81 TVASVDQLPYDEFIRSIPKMTILNIFEAPPLEGRMVLEVNPNIAYTMLDRLLGGQGAIPE 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ +L+ +E + +R + ++ E P E + NE
Sbjct: 141 KMG--ALTEIETTVMERVFGKALDTFHEAWKQIIELDPYQEGLEM--NPQFMQIVSPNEI 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I+ + I + L +P L + + + E+ +
Sbjct: 197 VVVISFSTKIGDTTGMINLCLPHVVLEPIMTKLSGQYWFSKQKKTRDEEERLRVEERVKV 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + T+ D + L+ G VI + + + G
Sbjct: 257 AKLPIVAEMGTATITVGDFLQLQKGDVIQLDQSIDNKLKIKVGNHLKFLGQPGTHKGRVA 316
Query: 298 IRITDRINFDQK 309
++I + I ++
Sbjct: 317 VQIDEVIEEGEE 328
>gi|312126831|ref|YP_003991705.1| flagellar motor switch protein flim [Caldicellulosiruptor
hydrothermalis 108]
gi|311776850|gb|ADQ06336.1| flagellar motor switch protein FliM [Caldicellulosiruptor
hydrothermalis 108]
Length = 329
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 99/305 (32%), Gaps = 13/305 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
KN ++ K + + Y + + + V + S +
Sbjct: 33 EKNIRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVE 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ +S V + S + + + +++ +LG + I ++ R+
Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFSPLKGSIVFEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E L +R + Q+ + + P LE + NE V + +
Sbjct: 145 FTEIELVLIERLLQQLINYFQEAWENIVDLRPRLEKIET--NPQFTQIVSPNETVALVTI 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
M + V + +P + ++ SE+ + +K + V +
Sbjct: 203 AMKVGEVEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + T+++ + L++G V+ R+ + K + GR ++IT
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322
Query: 304 INFDQ 308
+
Sbjct: 323 EEGED 327
>gi|217972623|ref|YP_002357374.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
gi|217497758|gb|ACK45951.1| flagellar motor switch protein FliM [Shewanella baltica OS223]
Length = 342
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
++ ++ R+ + + + L M ++S
Sbjct: 27 AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +H+ + S I LV L++N G ++
Sbjct: 81 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + I + + + E V
Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F + +P + + + Q+ ++ + + V D
Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
I + TLKDV+ K G +IP ++ Y C++GR N ++I ++
Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIHEK 316
Query: 304 INFDQ 308
I +
Sbjct: 317 IPRPE 321
>gi|163856451|ref|YP_001630749.1| flagellar motor switch protein FliM [Bordetella petrii DSM 12804]
gi|163260179|emb|CAP42481.1| flagellar motor switch protein FliM [Bordetella petrii]
Length = 335
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 36/310 (11%), Positives = 101/310 (32%), Gaps = 12/310 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
R ++ + R+ + + + + + L + M + DI+
Sbjct: 28 RDEADARGARAYDLSSPDRVV------RRRMQTLELINERFARQLRHLLLNFMRRNADIT 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S + K++ + + + +LV ++++L G +
Sbjct: 82 VGSIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPSLVFLVIDSLFGGDGRYHTR 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R +T E+++ +R + + K + +NE V
Sbjct: 142 VEGRDFTTTEQRIIRRLLNLTLESYGKSWEAVYPIEFEYVRSEMHT--KFASITGNNEVV 199
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQLN 239
+ ++ + +P + + ++ E + +R+ +
Sbjct: 200 VVSSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWTHQLSRQVRSAD 259
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V++ +++++++ LK+G V+P I + NG + C G Y +R
Sbjct: 260 VDLTAEFASIPSSIRELLRLKVGDVLPIEVP--ETVIANVNGVPLMECSYGVFNGQYALR 317
Query: 300 ITDRINFDQK 309
+ + ++
Sbjct: 318 VQNLFTYESD 327
>gi|332531130|ref|ZP_08407044.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
19624]
gi|332039415|gb|EGI75827.1| flagellar motor switch protein FliM [Hylemonella gracilis ATCC
19624]
Length = 331
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 46/279 (16%), Positives = 101/279 (36%), Gaps = 5/279 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + L + +IS Q ++S + F+ ++
Sbjct: 50 RMPTMEVVNERFARNLRISLFNFIRRSPEISVGPVQVQRYSAFLRELAVPTSFNIMAVRP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
N I C +L+ +++ L G + ++ R S E+++ R + IS +
Sbjct: 110 LRGNGMIVCEPSLIFGVIDTLYGGIGKFQSRIEGRDFSATEQRIINRLVDVISDEYKKAW 169
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
LE + +E V + + + I ++ + IP TL
Sbjct: 170 RGIYPLE--LEYQRSEMQPQFANIATPSEIVVSSSFQLEIGEMSGTIHFCIPYATLEPIR 227
Query: 211 LIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ S+Q S ++ R+ +V + + TT+++++ +K+G I
Sbjct: 228 DVLYSSTQGDSMEVDRRWVNVLTREIQAADVTLVAELARANTTVEELLAMKVGDFIELER 287
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + A +S G ++ C+ G Y IRI + +
Sbjct: 288 QPRIEATIS--GVPVFECQYGTHNAKYAIRIERSLRGND 324
>gi|161502902|ref|YP_001570014.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864249|gb|ABX20872.1| hypothetical protein SARI_00961 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 334
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|16760920|ref|NP_456537.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141388|ref|NP_804730.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213424998|ref|ZP_03357748.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584776|ref|ZP_03366602.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213855271|ref|ZP_03383511.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289829468|ref|ZP_06547080.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25298898|pir||AI0752 flagellar motor switch protein FliM [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503217|emb|CAD05724.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137015|gb|AAO68579.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 334
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|302872559|ref|YP_003841195.1| flagellar motor switch protein FliM [Caldicellulosiruptor
obsidiansis OB47]
gi|302575418|gb|ADL43209.1| flagellar motor switch protein FliM [Caldicellulosiruptor
obsidiansis OB47]
Length = 329
Score = 245 bits (625), Expect = 7e-63, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 99/305 (32%), Gaps = 13/305 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
KN ++ K + + Y + + + V + S +
Sbjct: 33 EKNVRVYDFKRPSKF------AKDHLRTLQMIFENYARIVTTFLSGYLRTIVQMDVLSVE 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ +S V + + + + + +++ +LG + I ++ R+
Sbjct: 87 QLTYYEFSNSLSNPVVMGIVNFTPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKV--RT 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E L +R + Q+ + E P LE + NE + + +
Sbjct: 145 FTEIELALIERLLQQLVNYFQEAWENIVELRPRLEKIET--NPQFTQIVSPNETIALVTI 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNID 243
M + V + +P + ++ SE+ + +K + V +
Sbjct: 203 AMKVGEVEGMANICLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVK 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + T+++ + L++G V+ R+ + K + GR ++IT
Sbjct: 263 AVLGRTQITVREFLELQVGDVLRLDRRKNQEIEVFVGNKLKFYGVPGRKEGRIAVKITRV 322
Query: 304 INFDQ 308
+
Sbjct: 323 EEGED 327
>gi|308173594|ref|YP_003920299.1| flagellar motor switching and energizing component [Bacillus
amyloliquefaciens DSM 7]
gi|307606458|emb|CBI42829.1| flagellar motor switching and energizing component [Bacillus
amyloliquefaciens DSM 7]
gi|328553474|gb|AEB23966.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
TA208]
gi|328911735|gb|AEB63331.1| flagellar motor switching and energizing component [Bacillus
amyloliquefaciens LL3]
Length = 332
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F K+ + IS +S + I S + +
Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + +L+ ++G T + N L+ +E +
Sbjct: 109 VHPMEGRIMMEVNPTIAYAMLDRVMGGIGITHNKADN--LTEIETNIISNLFENALGNYK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P E + NE V I++N I ++ L IP L
Sbjct: 167 EAWQSIADIDP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + ++ + + + + T+++ ++L++G
Sbjct: 225 PIIPKLSVHYWMQSDRNEAKPEETKSLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDC 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
I + K + + GRV + ++I D I +Q
Sbjct: 285 ITLDKSVTDPLTVLVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330
>gi|229544404|ref|ZP_04433462.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
gi|229324889|gb|EEN90566.1| flagellar motor switch protein FliM [Bacillus coagulans 36D1]
Length = 333
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 7/280 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L ++ V IS S + I S + + +
Sbjct: 48 SKDQIRSLTRIHENFSRILTTFLSAQLRTYVQISVASADQIPYEEFIRSIPKMTLLTVYE 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + N+ T+++ +LG E+I ++ L+ +EKK+ R Q L
Sbjct: 108 VPPLDGNIIMEINPNIAYTMMDRVLGGYGESINKIDK--LTEIEKKIMTRIFDQTIDQLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E +P L + NE V I++N TI + + L +PQ L
Sbjct: 166 EAWSEIIEINPFL--TELEVNPQFLQMISPNETVVVISLNTTIGDTSGMINLCLPQVVLD 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + + I + V + + ++D + L+IG
Sbjct: 224 PMMPKLSGHYWMQHAGKEPDPNNIRLLEEGIKEAKVPLTAELGTATIKIEDFLNLEIGDC 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
I + ++ + + + G+ G ++I D I
Sbjct: 284 IRLNQTIEEPLVVKVDKIPKFIGQPGKQGTKMAVQILDII 323
>gi|149908450|ref|ZP_01897113.1| Flagellar motor switch protein [Moritella sp. PE36]
gi|149808613|gb|EDM68548.1| Flagellar motor switch protein [Moritella sp. PE36]
Length = 350
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 11/294 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + M ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELVNERFARHMRISLFNMMRRTAEVSINGVQMLKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+H+ + + LV L+EN G ++ R + E+
Sbjct: 91 YVHTLFVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + ++ + ++ E E V + ++ ++
Sbjct: 151 RIIQMLLKIVFEDYHEAWAPVMDAE--FEYLDSEVNPAMANIVSPTEVVVVSSFHIELDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F + +P L + + Q+ E+ E + + V + T++ +
Sbjct: 209 GGGDFHITMPYSMLEPIRELLDAGVQSDKEDTDERWSSALQEEILDVPVELSTKLLETEL 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
T+ ++ L++G +IP + Y +LGR N ++I+ ++
Sbjct: 269 TIGQIMELRVGDIIPIEMP--EELTVFIEDLPSYKAKLGRNKDNVAVKISRKLK 320
>gi|260222423|emb|CBA31972.1| Flagellar motor switch protein fliM [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 334
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 96/305 (31%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ H + R+ + + + L + +IS
Sbjct: 30 AEHGEVRAYNISSQERIVRG------RMPTMEIVNERFARNLRVGLFNFIRRSPEISVGP 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++S + F+ ++ + + C LV +++ L G + ++
Sbjct: 84 VVVQRYSAFLRELAVPTNFNIVAIRPLRGSGLVVCEPALVFGVIDTLYGGIGKFQTRIEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R S E+++ R + I+ + LE + +E V +
Sbjct: 144 RDFSATEQRVINRLVDVITTEYKKAWKGIYPLE--LEYQRSEMQPQFANIATPSEIVIST 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ + I ++ + P TL + S+Q S ++ R+ V I
Sbjct: 202 SFQLEIGDITGAIHFSFPYSTLEPIRDVLYSSTQGDSIEVDRRWVNVLTREIQAAEVTIV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ T++ ++ +K G I + +G I+ C+ G Y IRI
Sbjct: 262 AELARADATVEQLLGMKKGDFIELDRAP--RIQATVDGVPIFECQYGTHNSKYAIRIEKA 319
Query: 304 INFDQ 308
+ +
Sbjct: 320 LRGND 324
>gi|84388118|ref|ZP_00991014.1| flagellar motor switch protein [Vibrio splendidus 12B01]
gi|84377185|gb|EAP94055.1| flagellar motor switch protein [Vibrio splendidus 12B01]
Length = 347
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 36/304 (11%), Positives = 93/304 (30%), Gaps = 11/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + + R+ + + + + + ++S
Sbjct: 28 ETENDSAVNFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSIN 81
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF ++ + I LV L+EN G ++
Sbjct: 82 GVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIE 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + + + S E E +
Sbjct: 142 GREFTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVV 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+ ++ ++ F +++P + + + Q+ + + VN
Sbjct: 200 SSFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNF 259
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + +L+D++ L+ G VIP A + Y ++GR G+ ++I++
Sbjct: 260 RVNLLEQDISLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISE 317
Query: 303 RINF 306
+I
Sbjct: 318 KIQR 321
>gi|126175121|ref|YP_001051270.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
gi|153001445|ref|YP_001367126.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
gi|304409952|ref|ZP_07391571.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
gi|307302335|ref|ZP_07582093.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
gi|125998326|gb|ABN62401.1| flagellar motor switch protein FliM [Shewanella baltica OS155]
gi|151366063|gb|ABS09063.1| flagellar motor switch protein FliM [Shewanella baltica OS185]
gi|304351361|gb|EFM15760.1| flagellar motor switch protein FliM [Shewanella baltica OS183]
gi|306914373|gb|EFN44794.1| flagellar motor switch protein FliM [Shewanella baltica BA175]
Length = 342
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 95/305 (31%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
++ ++ R+ + + + L M ++S
Sbjct: 27 AVGEDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 80
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +H+ + S I LV L++N G ++
Sbjct: 81 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 140
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + I + + + E V
Sbjct: 141 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 198
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F + +P + + + Q+ ++ + + V D
Sbjct: 199 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 258
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
I + TLKDV+ K G +IP ++ Y C++GR N ++I ++
Sbjct: 259 ANIVEHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEK 316
Query: 304 INFDQ 308
I +
Sbjct: 317 IPRPE 321
>gi|323174676|gb|EFZ60296.1| flagellar motor switch protein FliM [Escherichia coli LT-68]
Length = 334
Score = 244 bits (624), Expect = 8e-63, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQTLEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|16765314|ref|NP_460929.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62180551|ref|YP_216968.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161613455|ref|YP_001587420.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552791|ref|ZP_02346542.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167993551|ref|ZP_02574645.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234149|ref|ZP_02659207.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239216|ref|ZP_02664274.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244827|ref|ZP_02669759.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168259737|ref|ZP_02681710.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168462482|ref|ZP_02696413.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823019|ref|ZP_02835019.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444199|ref|YP_002041241.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451006|ref|YP_002046027.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194737897|ref|YP_002115010.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249640|ref|YP_002146047.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197265099|ref|ZP_03165173.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198245200|ref|YP_002215110.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200389660|ref|ZP_03216271.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931068|ref|ZP_03221894.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205352330|ref|YP_002226131.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856511|ref|YP_002243162.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224583525|ref|YP_002637323.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238912451|ref|ZP_04656288.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|120346|sp|P26418|FLIM_SALTY RecName: Full=Flagellar motor switch protein FliM
gi|154035|gb|AAA27104.1| fliM flagellar switch protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16420511|gb|AAL20888.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62128184|gb|AAX65887.1| flagellar biosynthesis, component of motor switch and energizing
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161362819|gb|ABX66587.1| hypothetical protein SPAB_01172 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402862|gb|ACF63084.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409310|gb|ACF69529.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194713399|gb|ACF92620.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634275|gb|EDX52627.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197213343|gb|ACH50740.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197243354|gb|EDY25974.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288083|gb|EDY27470.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939716|gb|ACH77049.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602105|gb|EDZ00651.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320112|gb|EDZ05317.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205272111|emb|CAR36964.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322661|gb|EDZ10500.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205328413|gb|EDZ15177.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331867|gb|EDZ18631.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336350|gb|EDZ23114.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340670|gb|EDZ27434.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350615|gb|EDZ37246.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708314|emb|CAR32617.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468052|gb|ACN45882.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261247142|emb|CBG24965.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993965|gb|ACY88850.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158490|emb|CBW18000.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912966|dbj|BAJ36940.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085405|emb|CBY95186.1| Flagellar motor switch protein fliM [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224621|gb|EFX49684.1| Flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616969|gb|EFY13877.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618208|gb|EFY15100.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625879|gb|EFY22698.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626331|gb|EFY23141.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632746|gb|EFY29491.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639088|gb|EFY35781.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640404|gb|EFY37060.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647235|gb|EFY43734.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649917|gb|EFY46338.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655525|gb|EFY51833.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660303|gb|EFY56541.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662984|gb|EFY59191.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668169|gb|EFY64328.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674072|gb|EFY70166.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675576|gb|EFY71650.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683013|gb|EFY79029.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686707|gb|EFY82685.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715027|gb|EFZ06598.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323130255|gb|ADX17685.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323195405|gb|EFZ80585.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198067|gb|EFZ83184.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204461|gb|EFZ89467.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207551|gb|EFZ92499.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211010|gb|EFZ95870.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217536|gb|EGA02255.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220731|gb|EGA05175.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226682|gb|EGA10879.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231558|gb|EGA15671.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236001|gb|EGA20080.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240571|gb|EGA24614.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245463|gb|EGA29463.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247581|gb|EGA31532.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253956|gb|EGA37780.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255516|gb|EGA39277.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262114|gb|EGA45677.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266237|gb|EGA49727.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270654|gb|EGA54095.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326622858|gb|EGE29203.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326627380|gb|EGE33723.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332988865|gb|AEF07848.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 334
Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|260598454|ref|YP_003211025.1| flagellar motor switch protein FliM [Cronobacter turicensis z3032]
gi|260217631|emb|CBA31927.1| Flagellar motor switch protein fliM [Cronobacter turicensis z3032]
Length = 334
Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 31 DGDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L S +LV ++NL G ++ R
Sbjct: 85 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + N N+ V
Sbjct: 145 FTHTEQRVINRMLKLALEAYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + +P + + ++ + S + + D R+ + +
Sbjct: 204 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRQEDQHWRDNLVRQVQHSELELIAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ LK G V+P ++ +G + + + G V Y +R+ IN
Sbjct: 264 FAEIPLRLSKILKLKPGDVLPIEKP--DRILVHVDGVPVLTSQYGTVSGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|77165630|ref|YP_344155.1| flagellar motor switch protein FliM [Nitrosococcus oceani ATCC
19707]
gi|254434449|ref|ZP_05047957.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27]
gi|76883944|gb|ABA58625.1| Flagellar motor switch protein FliM [Nitrosococcus oceani ATCC
19707]
gi|207090782|gb|EDZ68053.1| flagellar motor switch protein FliM [Nitrosococcus oceani AFC27]
Length = 336
Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 40/307 (13%), Positives = 94/307 (30%), Gaps = 11/307 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
K P R+ + + + + + + +++ Q
Sbjct: 34 EKTIRPYDFSSEDRI------ARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQ 87
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KFS +H+ + + LV L+E G S + +L NR
Sbjct: 88 VLKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENRE 147
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E + + + + A L Q + E + T S+E V
Sbjct: 148 FTPTEVHIIQLVLERTFADLKQAWEPVLAVN--FEYLQTELNPRLATIASSSEMVVVSTF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
++ E F + +P L + + + + V +
Sbjct: 206 HVEFEGGGGEFHIALPYTLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCT 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +L +++ LK G ++P + A+G ++ G + +++ +R+
Sbjct: 266 LTEIQLSLGEILALKSGDILPIELP--STVTALADGIPVFRVRYGIHHGSRALKVVERLL 323
Query: 306 FDQKSLK 312
+ +
Sbjct: 324 SPESFTE 330
>gi|206890128|ref|YP_002249868.1| flagellar motor switch protein FliM [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742066|gb|ACI21123.1| flagellar motor switch protein FliM [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 322
Score = 244 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 36/296 (12%), Positives = 82/296 (27%), Gaps = 9/296 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
P ++ + + + VD+ +
Sbjct: 33 SGVRPYDFTSQEKIVRGK------MPSLDIINERLARSFRVSLASDIRKIVDVINVNVNI 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF + S + L + ++ TL+E G S + + R
Sbjct: 87 TKFYDFLRSVPFPSSLNIIKLEPLRGFSLVVFDAPMIFTLIEFYFGGSGKGYYKPEGREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E+++ + + + + + P+ + T + V
Sbjct: 147 TPIEQRIIHKVVMMFLESMEEAWKPIFQIKPHFIRTEM--NPQFVTIVTPVDVVIETEFT 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ IE ++ IP ++ + + I + V ++ +
Sbjct: 205 LEIETRECKIMVCIPYSSVEPIKEKLYSAFLADRDEMDMKWIGRLKAQIKNAPVQVEAIL 264
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
K ++ LK G ++ R L G + +LG NY I+I
Sbjct: 265 GKVTIDFKTLLDLKSGDIVTLQRRIDEEVDLLVEGVPKFKGKLGTFKGNYAIKIIK 320
>gi|148976420|ref|ZP_01813126.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
gi|145964243|gb|EDK29499.1| flagellar motor switch protein M [Vibrionales bacterium SWAT-3]
Length = 347
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 36/295 (12%), Positives = 89/295 (30%), Gaps = 11/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFSRHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + I LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + + VN + +
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALRDEIMDVPVNFRVNLLEQDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+D++ L+ G VIP A + Y ++GR G+ ++I+++I
Sbjct: 269 SLRDLMELRPGDVIPMNMP--EHATMFVEELPTYRVKMGRSGEKLAVQISEKIQR 321
>gi|239997091|ref|ZP_04717615.1| flagellar motor switch protein FliM [Alteromonas macleodii ATCC
27126]
Length = 352
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 11/303 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G +T R+ + + + + M ++S
Sbjct: 27 GSDSDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSI 80
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF IH+ + I LV L++N G ++
Sbjct: 81 NGIQMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKI 140
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ + + I + + + + E E V
Sbjct: 141 EGREFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVV 198
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVN 241
+ ++ ++ F + +P L + + Q+ E+ + + V
Sbjct: 199 ISSFHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVA 258
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T + L+DV+ K G +IP + + +LGR N ++I
Sbjct: 259 LTTHMLDVDVPLRDVMEFKPGDIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIV 316
Query: 302 DRI 304
++I
Sbjct: 317 EKI 319
>gi|311105953|ref|YP_003978806.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
gi|310760642|gb|ADP16091.1| flagellar motor switch protein FliM [Achromobacter xylosoxidans A8]
Length = 335
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 37/311 (11%), Positives = 100/311 (32%), Gaps = 9/311 (2%)
Query: 4 QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
T+ AR L+ + + + + + + + M DI
Sbjct: 21 GESDSKTTATDQSAGARAYDLSSPERVVRRRMQTLELINERFARQMRHVLLNFMRRSADI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ S + K++ + + + NLV ++++L G
Sbjct: 81 TVGSIKIQKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R +T E+++ +R + + K + +NE
Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238
V + ++ + +P + + ++ E + +R+
Sbjct: 199 VVVTSFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQETTLEEVDQRWAQQLSRQVRSA 258
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
++++ +++++++ LK+G V+P + S +G + C G Y +
Sbjct: 259 DIDVVAEFARIPSSIRELMRLKVGDVLPVTVP--ETIVASVDGVPLMECGYGVFNGQYAL 316
Query: 299 RITDRINFDQK 309
R+ + D +
Sbjct: 317 RVQNMFTHDTE 327
>gi|312135842|ref|YP_004003180.1| flagellar motor switch protein flim [Caldicellulosiruptor
owensensis OL]
gi|311775893|gb|ADQ05380.1| flagellar motor switch protein FliM [Caldicellulosiruptor
owensensis OL]
Length = 329
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 7/292 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + Y + + + V + S + + +S
Sbjct: 40 DFKRPSKFAKDHLRTLQMIFENYARIVTTFLSGYLRTVVQMDVLSVEQLTYYEFSNSLSN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
V + + + + + +++ +LG + I ++ R+ + +E L +R +
Sbjct: 100 PVVMGIVNFAPLKGSIVYEMAPEIAFAMIDRVLGGFGKGIDKI--RTFTEIELALIERLL 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
Q+ + + P LE + NE V + + M + +
Sbjct: 158 QQLINYFQEAWENIIQLRPRLEKIET--NPQFTQIVSPNETVALVTIAMKVGEAEGMANI 215
Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P + ++ SE+ + +K + V + + + T+++
Sbjct: 216 CLPHMVIEPIMPRLSTKFWFSTSAKETSEETKEYLQKKIERTRVTVKAVLGRTQITVREF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ L++G V+ R+ + K + GR I+IT +
Sbjct: 276 LELQVGDVLRLDRRKNQEIEVYVGNKLKFYGVPGRKEGRVAIKITRVEEGED 327
>gi|293115681|ref|ZP_06604569.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
2876]
gi|292808783|gb|EFF67988.1| flagellar motor switch protein FliM [Butyrivibrio crossotus DSM
2876]
Length = 329
Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 97/308 (31%), Gaps = 13/308 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ K A+ K + + Y + L + + V + +
Sbjct: 32 TEEKTVKDYDFARPAKF------SKEHLRTLEIIFEHYGRLLSTNLPAYLRMPVQVEVKT 85
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++ +S ++ + N + ++NL +++ LLG + + + +
Sbjct: 86 SEAVIYSEFSNALSNPVLLGVVDFEPLDGNIVLEIASNLGFVIIDRLLGGAGKPLSK--G 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R S +E + +R +L + P +E + +E + +
Sbjct: 144 RDFSEIELSIIERIFNICVNLLREPWQNVLSIVPRMERIET--NSQFAQIISPSEMIAIV 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241
+++ + + + +P L + D + + +
Sbjct: 202 TISIKLGDTEGLMNVCLPYSVLEPVMDKLNTKYWFSTMQHRDVKTYEDAISSLISKAQIP 261
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + ++ D + L +G +I + + ++ G NY +RIT
Sbjct: 262 VKAVLGNSTISVNDFLNLNVGDIIRLDRKVDEELDVYVGNIHKFTALPGSADDNYAVRIT 321
Query: 302 DRINFDQK 309
+ + +++
Sbjct: 322 NVLRGEEE 329
>gi|294636877|ref|ZP_06715207.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685]
gi|291089907|gb|EFE22468.1| flagellar motor switch protein FliM [Edwardsiella tarda ATCC 23685]
Length = 337
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P P R+ + + + + + + DI+ + +
Sbjct: 34 DGEVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLLRRSPDITVGAVR 87
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 88 IQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVDGRE 147
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + + I N N+ V T
Sbjct: 148 FTHTEQRVIQRMLRLALDAYRDAWGAIFKLEVEYVRSE-IQVKFTNITTSPNDIVVTTPF 206
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
+ + ++ F + IP + + ++ + S+ + + D +++ + +
Sbjct: 207 TVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVAN 266
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L DV+ L++G V+P I + +G + +C+ G Y +R+ IN
Sbjct: 267 FVDIPLRLSDVLKLQVGDVLPIDRP--DRLIANVDGVPVLTCQYGCYHGQYALRVEKMIN 324
Query: 306 F 306
Sbjct: 325 P 325
>gi|74312485|ref|YP_310904.1| flagellar motor switch protein FliM [Shigella sonnei Ss046]
gi|73855962|gb|AAZ88669.1| flagellar motor switch protein FliM [Shigella sonnei Ss046]
gi|323168934|gb|EFZ54614.1| flagellar motor switch protein FliM [Shigella sonnei 53G]
Length = 334
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G + ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGNGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DGIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|224826626|ref|ZP_03699727.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002]
gi|224601227|gb|EEG07409.1| flagellar motor switch protein FliM [Lutiella nitroferrum 2002]
Length = 335
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 38/308 (12%), Positives = 92/308 (29%), Gaps = 11/308 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ R+ + + + L + + +IS
Sbjct: 28 GQDSQGVRTYDIGRQERIVRG------RMPTLEIINERFARNLRIGLFNFIRRNAEISVG 81
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ K+S I + + + + +LV +++NL G+ ++
Sbjct: 82 PVRVQKYSEFIRNLVVPTNLNLVHVKPLRGTGLLIFDPDLVFLVVDNLFGSDGRYHVRVE 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ +R + + + + E V
Sbjct: 142 GRDFTPTEQRIIRRLLEVVFTEYQKAWEPVYPIE--FVYLRSEMNTQFANIATPTEVVVA 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
+ ++ + F + +P + + S Q + +R+ V++
Sbjct: 200 MTFHIEMGAGGGEFHVCLPYSMVEPIRDVLSSTMQADRTEVDNRWVSLMSRQVQAAEVDL 259
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ TL V+ LK G V+ E A +S G + C G V +Y +++
Sbjct: 260 VATLAGTSVTLGQVLNLKQGDVVTLEIPEMIIADVS--GIPVVECTYGTVQGHYALKVET 317
Query: 303 RINFDQKS 310
+ +
Sbjct: 318 ILAGAHEL 325
>gi|323968361|gb|EGB63768.1| flagellar motor switch protein FliM [Escherichia coli M863]
gi|323977874|gb|EGB72960.1| flagellar motor switch protein FliM [Escherichia coli TW10509]
gi|327253077|gb|EGE64731.1| flagellar motor switch protein FliM [Escherichia coli STEC_7v]
Length = 334
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGDSDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|300994270|ref|ZP_07180822.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1]
gi|300304935|gb|EFJ59455.1| flagellar motor switch protein FliM [Escherichia coli MS 200-1]
Length = 334
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|269139494|ref|YP_003296195.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
gi|267985155|gb|ACY84984.1| flagellar motor switch protein [Edwardsiella tarda EIB202]
gi|304559383|gb|ADM42047.1| Flagellar motor switch protein FliM [Edwardsiella tarda FL6-60]
Length = 337
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 98/304 (32%), Gaps = 10/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + P P R+ + + + + + + DI+
Sbjct: 31 ENHDGDVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLLRRSPDITVG 84
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + + + L + +LV ++NL G ++
Sbjct: 85 AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ +R + + I N N+ V T
Sbjct: 145 GREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVEYVRSE-IQVKFTNITTSPNDIVVT 203
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242
+ + ++ F + IP + + ++ + S+ + + D +++ + +
Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L DV+ L+IG V+P + + +G + +C+ G Y +R+
Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321
Query: 303 RINF 306
IN
Sbjct: 322 MINP 325
>gi|56413111|ref|YP_150186.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362037|ref|YP_002141674.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127368|gb|AAV76874.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093514|emb|CAR58975.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 334
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GTIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|332284035|ref|YP_004415946.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7]
gi|330427988|gb|AEC19322.1| flagellar motor switch protein FliM [Pusillimonas sp. T7-7]
Length = 330
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 37/312 (11%), Positives = 101/312 (32%), Gaps = 8/312 (2%)
Query: 1 MRGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
+ G+S K ++ P + L+ + + + + + L + M +
Sbjct: 19 VTGESNEKTSTADDPPGVRPYDLSSPDRVVRHRMQTLELINERFARRLRSVLLSFMRRNA 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
DI+ S + K+S + + ++ NLV ++++L G
Sbjct: 79 DITVGSIRIQKYSDFERNLPVPSNLNMVTMKPLRGAALFTFDPNLVFLVIDSLFGGHGRY 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R +T E+++ +R + E + K + N
Sbjct: 139 STRVEGRDFTTTEQRIIRRLLNLTLESYGGAWEQVYPVQ--FEYIRSEMHTKFASITSGN 196
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE--NQSEDLIDPFARKTY 236
E V + N+ + + + +P + + ++ + R+
Sbjct: 197 EIVVVTSFNIELGASGGNLNICLPYSMIEPVRDLLTRPLQEANAGAIDQRWTHQLTRQVR 256
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+V + ++++ +++ L++ ++P G + C G Y
Sbjct: 257 SADVELVAEFARIESSIGELMRLEVNDILPLEITP--AINAHVGGVPVMECTYGTFNGRY 314
Query: 297 TIRITDRINFDQ 308
+R+ + +
Sbjct: 315 ALRVKKVLASSE 326
>gi|238785486|ref|ZP_04629469.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
43970]
gi|238713588|gb|EEQ05617.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
43970]
Length = 334
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 10/302 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ P P R+ + + + + + DI+
Sbjct: 30 TETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPI 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + L + +LV ++NL G ++ R
Sbjct: 84 KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ R + + + I N N+ V T
Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTP 202
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
++ I ++ F + IP + + + + S + + ++ + +
Sbjct: 203 FHVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVA 262
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L ++ L+ G V+P I +G + + + G + Y +R+ I
Sbjct: 263 NFVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLI 320
Query: 305 NF 306
N
Sbjct: 321 NP 322
>gi|299068765|emb|CBJ40005.1| flagellar motor switching and energizing component [Ralstonia
solanacearum CMR15]
Length = 335
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 5/276 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + + + +IS + K+S I + + +
Sbjct: 50 RMPTLEIINERFARNWRMGLFNFLRRNAEISVGPVKVQKYSEFIRNLVVPAAINLVHVKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
NL+ ++++L G ++ R + VE+++ +R + + +
Sbjct: 110 LRGTALFVFDPNLIFIVVDHLFGGDGRFHMRVEGRDFTQVEQRIIQRMLQLMFEHYGKAW 169
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
E + + NE V + +M + + + +P +
Sbjct: 170 QPIYPIE--FEPLRMEMHTEFANVATPNEVVVSTRFSMELGSNGGDVHVCMPYTMIEPIR 227
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ S+ Q ++ + + +++ V + + + D++ +K+G V+P
Sbjct: 228 DLLTSAIQGEALEVDKRWVRLLSQQVQTAEVEVVAHLANANVHVSDILNMKVGDVVPIEL 287
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+G + C G Y +R+ +N
Sbjct: 288 --DDAVTARVDGVPVMECAYGTFNGQYALRVNRMLN 321
>gi|15831938|ref|NP_310711.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
Sakai]
gi|82543593|ref|YP_407540.1| flagellar motor switch protein FliM [Shigella boydii Sb227]
gi|157156914|ref|YP_001463247.1| flagellar motor switch protein FliM [Escherichia coli E24377A]
gi|157161416|ref|YP_001458734.1| flagellar motor switch protein FliM [Escherichia coli HS]
gi|168751874|ref|ZP_02776896.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4113]
gi|168758259|ref|ZP_02783266.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4401]
gi|168764429|ref|ZP_02789436.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4501]
gi|168771552|ref|ZP_02796559.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4486]
gi|168777372|ref|ZP_02802379.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4196]
gi|168783342|ref|ZP_02808349.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4076]
gi|168790295|ref|ZP_02815302.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC869]
gi|168802292|ref|ZP_02827299.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC508]
gi|170019722|ref|YP_001724676.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739]
gi|170684212|ref|YP_001743300.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5]
gi|188494069|ref|ZP_03001339.1| flagellar motor switch protein FliM [Escherichia coli 53638]
gi|191168308|ref|ZP_03030101.1| flagellar motor switch protein FliM [Escherichia coli B7A]
gi|191173313|ref|ZP_03034843.1| flagellar motor switch protein FliM [Escherichia coli F11]
gi|193071140|ref|ZP_03052064.1| flagellar motor switch protein FliM [Escherichia coli E110019]
gi|194429931|ref|ZP_03062441.1| flagellar motor switch protein FliM [Escherichia coli B171]
gi|194439587|ref|ZP_03071660.1| flagellar motor switch protein FliM [Escherichia coli 101-1]
gi|195939251|ref|ZP_03084633.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4024]
gi|208810354|ref|ZP_03252230.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4206]
gi|208816529|ref|ZP_03257649.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4045]
gi|208818778|ref|ZP_03259098.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4042]
gi|209396357|ref|YP_002271061.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4115]
gi|209919367|ref|YP_002293451.1| flagellar motor switch protein FliM [Escherichia coli SE11]
gi|215487145|ref|YP_002329576.1| flagellar motor switch protein FliM [Escherichia coli O127:H6 str.
E2348/69]
gi|217328609|ref|ZP_03444690.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
TW14588]
gi|218554525|ref|YP_002387438.1| flagellar motor switch protein FliM [Escherichia coli IAI1]
gi|218558802|ref|YP_002391715.1| flagellar motor switch protein FliM [Escherichia coli S88]
gi|218689940|ref|YP_002398152.1| flagellar motor switch protein FliM [Escherichia coli ED1a]
gi|218695550|ref|YP_002403217.1| flagellar motor switch protein FliM [Escherichia coli 55989]
gi|218699494|ref|YP_002407123.1| flagellar motor switch protein FliM [Escherichia coli IAI39]
gi|218705438|ref|YP_002412957.1| flagellar motor switch protein FliM [Escherichia coli UMN026]
gi|227885626|ref|ZP_04003431.1| flagellar motor switch protein FliM [Escherichia coli 83972]
gi|254793595|ref|YP_003078432.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
TW14359]
gi|256017862|ref|ZP_05431727.1| flagellar motor switch protein FliM [Shigella sp. D9]
gi|256022397|ref|ZP_05436262.1| flagellar motor switch protein FliM [Escherichia sp. 4_1_40B]
gi|260844344|ref|YP_003222122.1| flagellar motor switching and energizing component FliM
[Escherichia coli O103:H2 str. 12009]
gi|260855920|ref|YP_003229811.1| flagellar motor switching and energizing component FliM
[Escherichia coli O26:H11 str. 11368]
gi|260868538|ref|YP_003234940.1| flagellar motor switching and energizing component FliM
[Escherichia coli O111:H- str. 11128]
gi|261227560|ref|ZP_05941841.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254616|ref|ZP_05947149.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
FRIK966]
gi|291283122|ref|YP_003499940.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
CB9615]
gi|293405428|ref|ZP_06649420.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412]
gi|293410301|ref|ZP_06653877.1| flagellar motor switch protein FliM [Escherichia coli B354]
gi|293415255|ref|ZP_06657898.1| flagellar motor switch protein FliM [Escherichia coli B185]
gi|293446325|ref|ZP_06662747.1| flagellar motor switch protein FliM [Escherichia coli B088]
gi|298381072|ref|ZP_06990671.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302]
gi|300818635|ref|ZP_07098843.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1]
gi|300822285|ref|ZP_07102426.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7]
gi|300899202|ref|ZP_07117478.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1]
gi|300904835|ref|ZP_07122661.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1]
gi|300920164|ref|ZP_07136614.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1]
gi|300923892|ref|ZP_07139907.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1]
gi|300931158|ref|ZP_07146505.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1]
gi|300940400|ref|ZP_07154985.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1]
gi|300951570|ref|ZP_07165403.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1]
gi|300956539|ref|ZP_07168821.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1]
gi|301018205|ref|ZP_07182720.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1]
gi|301305288|ref|ZP_07211385.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1]
gi|301327732|ref|ZP_07220937.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1]
gi|301644596|ref|ZP_07244585.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1]
gi|306814232|ref|ZP_07448398.1| flagellar motor switch protein FliM [Escherichia coli NC101]
gi|307138612|ref|ZP_07497968.1| flagellar motor switch protein FliM [Escherichia coli H736]
gi|307312469|ref|ZP_07592103.1| flagellar motor switch protein FliM [Escherichia coli W]
gi|309795948|ref|ZP_07690361.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7]
gi|312967142|ref|ZP_07781360.1| flagellar motor switch protein FliM [Escherichia coli 2362-75]
gi|312973838|ref|ZP_07788010.1| flagellar motor switch protein FliM [Escherichia coli 1827-70]
gi|331657991|ref|ZP_08358953.1| flagellar motor switch protein FliM [Escherichia coli TA206]
gi|331663441|ref|ZP_08364351.1| flagellar motor switch protein FliM [Escherichia coli TA143]
gi|331668636|ref|ZP_08369484.1| flagellar motor switch protein FliM [Escherichia coli TA271]
gi|331683497|ref|ZP_08384098.1| flagellar motor switch protein FliM [Escherichia coli H299]
gi|13362152|dbj|BAB36107.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
Sakai]
gi|81245004|gb|ABB65712.1| FliM [Shigella boydii Sb227]
gi|157067096|gb|ABV06351.1| flagellar motor switch protein FliM [Escherichia coli HS]
gi|157078944|gb|ABV18652.1| flagellar motor switch protein FliM [Escherichia coli E24377A]
gi|169754650|gb|ACA77349.1| flagellar motor switch protein FliM [Escherichia coli ATCC 8739]
gi|170521930|gb|ACB20108.1| flagellar motor switch protein FliM [Escherichia coli SMS-3-5]
gi|187767405|gb|EDU31249.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4196]
gi|188014186|gb|EDU52308.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4113]
gi|188489268|gb|EDU64371.1| flagellar motor switch protein FliM [Escherichia coli 53638]
gi|188999277|gb|EDU68263.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4076]
gi|189354878|gb|EDU73297.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4401]
gi|189359725|gb|EDU78144.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4486]
gi|189365559|gb|EDU83975.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4501]
gi|189370212|gb|EDU88628.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC869]
gi|189375729|gb|EDU94145.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC508]
gi|190901680|gb|EDV61436.1| flagellar motor switch protein FliM [Escherichia coli B7A]
gi|190906430|gb|EDV66039.1| flagellar motor switch protein FliM [Escherichia coli F11]
gi|192955535|gb|EDV86014.1| flagellar motor switch protein FliM [Escherichia coli E110019]
gi|194412020|gb|EDX28332.1| flagellar motor switch protein FliM [Escherichia coli B171]
gi|194421496|gb|EDX37510.1| flagellar motor switch protein FliM [Escherichia coli 101-1]
gi|208724870|gb|EDZ74577.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4206]
gi|208730872|gb|EDZ79561.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4045]
gi|208738901|gb|EDZ86583.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4042]
gi|209157757|gb|ACI35190.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC4115]
gi|209766818|gb|ACI81721.1| flagellar motor switch protein FliM [Escherichia coli]
gi|209766820|gb|ACI81722.1| flagellar motor switch protein FliM [Escherichia coli]
gi|209766822|gb|ACI81723.1| flagellar motor switch protein FliM [Escherichia coli]
gi|209766824|gb|ACI81724.1| flagellar motor switch protein FliM [Escherichia coli]
gi|209766826|gb|ACI81725.1| flagellar motor switch protein FliM [Escherichia coli]
gi|209912626|dbj|BAG77700.1| flagellar motor switch protein FliM [Escherichia coli SE11]
gi|215265217|emb|CAS09607.1| flagellar motor switching and energizing component [Escherichia
coli O127:H6 str. E2348/69]
gi|217317956|gb|EEC26383.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
TW14588]
gi|218352282|emb|CAU98039.1| flagellar motor switching and energizing component [Escherichia
coli 55989]
gi|218361293|emb|CAQ98877.1| flagellar motor switching and energizing component [Escherichia
coli IAI1]
gi|218365571|emb|CAR03298.1| flagellar motor switching and energizing component [Escherichia
coli S88]
gi|218369480|emb|CAR17245.1| flagellar motor switching and energizing component [Escherichia
coli IAI39]
gi|218427504|emb|CAR08399.2| flagellar motor switching and energizing component [Escherichia
coli ED1a]
gi|218432535|emb|CAR13428.1| flagellar motor switching and energizing component [Escherichia
coli UMN026]
gi|222033684|emb|CAP76425.1| flagellar motor switch protein fliM [Escherichia coli LF82]
gi|227837199|gb|EEJ47665.1| flagellar motor switch protein FliM [Escherichia coli 83972]
gi|254592995|gb|ACT72356.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. TW14359]
gi|257754569|dbj|BAI26071.1| flagellar motor switching and energizing component FliM
[Escherichia coli O26:H11 str. 11368]
gi|257759491|dbj|BAI30988.1| flagellar motor switching and energizing component FliM
[Escherichia coli O103:H2 str. 12009]
gi|257764894|dbj|BAI36389.1| flagellar motor switching and energizing component FliM
[Escherichia coli O111:H- str. 11128]
gi|281179007|dbj|BAI55337.1| flagellar motor switch protein FliM [Escherichia coli SE15]
gi|284921853|emb|CBG34928.1| flagellar motor switch protein FliM [Escherichia coli 042]
gi|290762995|gb|ADD56956.1| Flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
CB9615]
gi|291323155|gb|EFE62583.1| flagellar motor switch protein FliM [Escherichia coli B088]
gi|291427636|gb|EFF00663.1| flagellar motor switch protein fliM [Escherichia coli FVEC1412]
gi|291432903|gb|EFF05882.1| flagellar motor switch protein FliM [Escherichia coli B185]
gi|291470769|gb|EFF13253.1| flagellar motor switch protein FliM [Escherichia coli B354]
gi|294492735|gb|ADE91491.1| flagellar motor switch protein FliM [Escherichia coli IHE3034]
gi|298278514|gb|EFI20028.1| flagellar motor switch protein fliM [Escherichia coli FVEC1302]
gi|300316639|gb|EFJ66423.1| flagellar motor switch protein FliM [Escherichia coli MS 175-1]
gi|300357183|gb|EFJ73053.1| flagellar motor switch protein FliM [Escherichia coli MS 198-1]
gi|300399792|gb|EFJ83330.1| flagellar motor switch protein FliM [Escherichia coli MS 69-1]
gi|300403262|gb|EFJ86800.1| flagellar motor switch protein FliM [Escherichia coli MS 84-1]
gi|300412821|gb|EFJ96131.1| flagellar motor switch protein FliM [Escherichia coli MS 115-1]
gi|300419855|gb|EFK03166.1| flagellar motor switch protein FliM [Escherichia coli MS 182-1]
gi|300449197|gb|EFK12817.1| flagellar motor switch protein FliM [Escherichia coli MS 116-1]
gi|300454794|gb|EFK18287.1| flagellar motor switch protein FliM [Escherichia coli MS 21-1]
gi|300461015|gb|EFK24508.1| flagellar motor switch protein FliM [Escherichia coli MS 187-1]
gi|300525168|gb|EFK46237.1| flagellar motor switch protein FliM [Escherichia coli MS 119-7]
gi|300528807|gb|EFK49869.1| flagellar motor switch protein FliM [Escherichia coli MS 107-1]
gi|300839494|gb|EFK67254.1| flagellar motor switch protein FliM [Escherichia coli MS 124-1]
gi|300845732|gb|EFK73492.1| flagellar motor switch protein FliM [Escherichia coli MS 78-1]
gi|301077071|gb|EFK91877.1| flagellar motor switch protein FliM [Escherichia coli MS 146-1]
gi|305852391|gb|EFM52842.1| flagellar motor switch protein FliM [Escherichia coli NC101]
gi|306907640|gb|EFN38143.1| flagellar motor switch protein FliM [Escherichia coli W]
gi|307553958|gb|ADN46733.1| flagellar motor switch protein FliM [Escherichia coli ABU 83972]
gi|307626579|gb|ADN70883.1| flagellar motor switch protein FliM [Escherichia coli UM146]
gi|308120398|gb|EFO57660.1| flagellar motor switch protein FliM [Escherichia coli MS 145-7]
gi|309702234|emb|CBJ01551.1| flagellar motor switch protein FliM [Escherichia coli ETEC H10407]
gi|310332433|gb|EFP99668.1| flagellar motor switch protein FliM [Escherichia coli 1827-70]
gi|312288606|gb|EFR16508.1| flagellar motor switch protein FliM [Escherichia coli 2362-75]
gi|312946538|gb|ADR27365.1| flagellar motor switch protein FliM [Escherichia coli O83:H1 str.
NRG 857C]
gi|315061245|gb|ADT75572.1| flagellar motor switching and energizing component [Escherichia
coli W]
gi|315257223|gb|EFU37191.1| flagellar motor switch protein FliM [Escherichia coli MS 85-1]
gi|315286659|gb|EFU46092.1| flagellar motor switch protein FliM [Escherichia coli MS 110-3]
gi|315290262|gb|EFU49640.1| flagellar motor switch protein FliM [Escherichia coli MS 153-1]
gi|315296479|gb|EFU55776.1| flagellar motor switch protein FliM [Escherichia coli MS 16-3]
gi|320175465|gb|EFW50564.1| Flagellar motor switch protein FliM [Shigella dysenteriae CDC
74-1112]
gi|320184483|gb|EFW59287.1| Flagellar motor switch protein FliM [Shigella flexneri CDC 796-83]
gi|320191919|gb|EFW66566.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
EC1212]
gi|320194342|gb|EFW68973.1| Flagellar motor switch protein FliM [Escherichia coli WV_060327]
gi|320198635|gb|EFW73235.1| Flagellar motor switch protein FliM [Escherichia coli EC4100B]
gi|320641793|gb|EFX11181.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
G5101]
gi|320647152|gb|EFX15985.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str.
493-89]
gi|320652436|gb|EFX20734.1| flagellar motor switch protein FliM [Escherichia coli O157:H- str.
H 2687]
gi|320658038|gb|EFX25800.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658610|gb|EFX26304.1| flagellar motor switch protein FliM [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668508|gb|EFX35335.1| flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
LSU-61]
gi|323152724|gb|EFZ38996.1| flagellar motor switch protein FliM [Escherichia coli EPECa14]
gi|323158576|gb|EFZ44590.1| flagellar motor switch protein FliM [Escherichia coli E128010]
gi|323180802|gb|EFZ66342.1| flagellar motor switch protein FliM [Escherichia coli 1180]
gi|323183929|gb|EFZ69316.1| flagellar motor switch protein FliM [Escherichia coli 1357]
gi|323186821|gb|EFZ72141.1| flagellar motor switch protein FliM [Escherichia coli RN587/1]
gi|323378178|gb|ADX50446.1| flagellar motor switch protein FliM [Escherichia coli KO11]
gi|323937215|gb|EGB33495.1| flagellar motor switch protein FliM [Escherichia coli E1520]
gi|323940396|gb|EGB36587.1| flagellar motor switch protein FliM [Escherichia coli E482]
gi|323948351|gb|EGB44338.1| flagellar motor switch protein FliM [Escherichia coli H120]
gi|323952438|gb|EGB48311.1| flagellar motor switch protein FliM [Escherichia coli H252]
gi|323956341|gb|EGB52084.1| flagellar motor switch protein FliM [Escherichia coli H263]
gi|323961989|gb|EGB57588.1| flagellar motor switch protein FliM [Escherichia coli H489]
gi|323972755|gb|EGB67955.1| flagellar motor switch protein FliM [Escherichia coli TA007]
gi|324005856|gb|EGB75075.1| flagellar motor switch protein FliM [Escherichia coli MS 57-2]
gi|324013500|gb|EGB82719.1| flagellar motor switch protein FliM [Escherichia coli MS 60-1]
gi|324018854|gb|EGB88073.1| flagellar motor switch protein FliM [Escherichia coli MS 117-3]
gi|324118994|gb|EGC12883.1| flagellar motor switch protein FliM [Escherichia coli E1167]
gi|326342355|gb|EGD66136.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
1044]
gi|326344860|gb|EGD68607.1| Flagellar motor switch protein FliM [Escherichia coli O157:H7 str.
1125]
gi|330911751|gb|EGH40261.1| flagellar motor switch protein FliM [Escherichia coli AA86]
gi|331056239|gb|EGI28248.1| flagellar motor switch protein FliM [Escherichia coli TA206]
gi|331059240|gb|EGI31217.1| flagellar motor switch protein FliM [Escherichia coli TA143]
gi|331063830|gb|EGI35741.1| flagellar motor switch protein FliM [Escherichia coli TA271]
gi|331079712|gb|EGI50909.1| flagellar motor switch protein FliM [Escherichia coli H299]
gi|332093098|gb|EGI98162.1| flagellar motor switch protein FliM [Shigella boydii 5216-82]
gi|332096930|gb|EGJ01919.1| flagellar motor switch protein FliM [Shigella boydii 3594-74]
gi|332343671|gb|AEE57005.1| flagellar motor switch protein FliM [Escherichia coli UMNK88]
Length = 334
Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|332095507|gb|EGJ00523.1| flagellar motor switch protein FliM [Shigella dysenteriae 155-74]
Length = 334
Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RKRLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|320529422|ref|ZP_08030510.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
gi|320138388|gb|EFW30282.1| flagellar motor switch protein FliM [Selenomonas artemidis F0399]
Length = 334
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + + L + V+I S + + + S V +
Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPSVIGIIA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L N I ++ ++ + G + P + +R+L+ +E + +R I +
Sbjct: 109 LPPLKGNIIIEVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E PN E + ++ V + ++M + +V + IP L
Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLVTIHMKLGDVEGMMNICIPYLVLE 224
Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S + S D + RK + V + T+ + +TL G
Sbjct: 225 PVMSKLTTSFWVASSVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGD 284
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V+ K + + G GK ++I+ I D+
Sbjct: 285 VLQLDTLAKDELVCYVGTNAKFRAHPGTAGKRMAVQISGIIEGDED 330
>gi|194434971|ref|ZP_03067214.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012]
gi|194416806|gb|EDX32932.1| flagellar motor switch protein FliM [Shigella dysenteriae 1012]
Length = 334
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|146312182|ref|YP_001177256.1| flagellar motor switch protein FliM [Enterobacter sp. 638]
gi|145319058|gb|ABP61205.1| flagellar motor switch protein FliM [Enterobacter sp. 638]
Length = 334
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P P R+ + + + + + + DI+ + +
Sbjct: 32 EPEIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L S +LV ++NL G ++ R
Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLFVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + N N+ V
Sbjct: 146 FTHTEQRVINRMLKLALESYSDAWKAIHPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + +P + + ++ + S N+ ++ + R+ + +
Sbjct: 205 HVEIGNLTGEFNICLPFSMIEPLREVLVNPPLENSRNEDQNWRENLVRQVQHSQLELVAS 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I + + + + G V Y +R+ IN
Sbjct: 265 FADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDDVPVLTSQYGTVNGQYALRVEHLIN 322
Query: 306 F 306
Sbjct: 323 P 323
>gi|170769401|ref|ZP_02903854.1| flagellar motor switch protein FliM [Escherichia albertii TW07627]
gi|170121725|gb|EDS90656.1| flagellar motor switch protein FliM [Escherichia albertii TW07627]
Length = 334
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 STESDIRPYDPNTQQRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + + N N+ V
Sbjct: 144 REFTDTEQRVINRMLKLALEGYSDAWKAINPLNVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ Q S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPQENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPSDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|320182738|gb|EFW57622.1| Flagellar motor switch protein FliM [Shigella boydii ATCC 9905]
Length = 334
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLDVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|167630301|ref|YP_001680800.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
Ice1]
gi|167593041|gb|ABZ84789.1| flagellar motor switch protein flim [Heliobacterium modesticaldum
Ice1]
Length = 331
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 44/317 (13%), Positives = 102/317 (32%), Gaps = 9/317 (2%)
Query: 2 RGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
GQ ++ + K + Y + L + V
Sbjct: 19 SGQVTPEDVKDDLTSKIRVYDFKRPNKFSKDQIHTLQVIYENYCRSLTTYLAANLRTLVQ 78
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
IS S + I S + + ++S + N + N+ +++ L G +
Sbjct: 79 ISVQSLDQLTYEEFIRSIPNPTIVNIFTMSPLNGNGIMEIHPNIAFAVIDRLFGGTGNPP 138
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R L+ +E+ + +RT ++ + + LE + E
Sbjct: 139 DKI--RGLTEIEQSVFQRTTRRMLDSFTEAWDNIAQVKARLEMIET--NPQFIQIVAPTE 194
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTY 236
V I + I +V + +P L N ++ ++ + ++ +
Sbjct: 195 MVVVITLACKIGDVEGMINICLPYILLEPIISKLSAHFWFSNAAKERTTEQLEALRNRLE 254
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ V I + ++ +++ L++G VI +R + + + Y G G
Sbjct: 255 RALVPITVLLGRTTLSVSELLDLQLGDVIQLDNRADSELEVLIGQRVKYLARPGLSGSKL 314
Query: 297 TIRITDRINFDQKSLKN 313
I+IT ++
Sbjct: 315 GIQITATYEKGVETDDE 331
>gi|238794009|ref|ZP_04637627.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC
29909]
gi|238726641|gb|EEQ18177.1| Flagellar motor switch protein fliM [Yersinia intermedia ATCC
29909]
Length = 334
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 89/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ +
Sbjct: 31 ETDVKPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + I N N+ V T
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|120598257|ref|YP_962831.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
gi|146293665|ref|YP_001184089.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
gi|120558350|gb|ABM24277.1| flagellar motor switch protein FliM [Shewanella sp. W3-18-1]
gi|145565355|gb|ABP76290.1| flagellar motor switch protein FliM [Shewanella putrefaciens CN-32]
gi|319427064|gb|ADV55138.1| flagellar motor switch protein FliM [Shewanella putrefaciens 200]
Length = 343
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 41/305 (13%), Positives = 94/305 (30%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ ++ R+ + + + L M ++S
Sbjct: 28 AASQDARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 81
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +H+ + S I LV L++N G ++
Sbjct: 82 VQMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 141
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + I + + + E V
Sbjct: 142 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 199
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F + +P + + + Q+ ++ + + V D
Sbjct: 200 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 259
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + TLKDV+ K G +IP ++ Y C++GR N ++I ++
Sbjct: 260 ACVVEHELTLKDVMNFKAGDIIPVELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEK 317
Query: 304 INFDQ 308
I +
Sbjct: 318 IPRPE 322
>gi|138894751|ref|YP_001125204.1| flagellar motor switch protein FliM [Geobacillus
thermodenitrificans NG80-2]
gi|196247627|ref|ZP_03146329.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
gi|134266264|gb|ABO66459.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212411|gb|EDY07168.1| flagellar motor switch protein FliM [Geobacillus sp. G11MC16]
Length = 334
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 40/289 (13%), Positives = 98/289 (33%), Gaps = 7/289 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V IS S + + S + + +
Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N+ +L+ ++G ++ ++ + L+ +E ++ + A
Sbjct: 110 VPPLDGHVLLEVNPNIAYAMLDRVMGGRGASMDKVEH--LTEIETRIMSSLFDKAFAHWR 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P DF + N+ V I++N I + IP L
Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q + + +S + R+ + I + T+ + + L++G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAGRIERRIRAAQLPIVAELGTAVVTVGEFLQLEVGDV 285
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
I ++ + + G+ K ++I I ++S
Sbjct: 286 IQLKQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGGEESYDE 334
>gi|317492415|ref|ZP_07950844.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919754|gb|EFV41084.1| flagellar motor switch protein FliM [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 337
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 98/302 (32%), Gaps = 10/302 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ P P R+ + + + + + + DI+ +
Sbjct: 33 SESDVRPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAV 86
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + L+ + + +LV ++NL G ++ R
Sbjct: 87 KIQPYHEFARNLPVPTNLNLIHLNPLRGTALMVFAPSLVFMAVDNLFGGDGRFPTKVDGR 146
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ KR + S + I N N+ V T
Sbjct: 147 EFTHTEQRVIKRMLRLALDAYRDAWSAIYKLEVEYVRSE-IQVKFTNITTSPNDIVVTTP 205
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
+ + ++ F + IP + + ++ + S+ + + D +++ + +
Sbjct: 206 FTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELELVA 265
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L +V+ L+ G V+P I + +G + +C+ G Y +R+ I
Sbjct: 266 NFVDIPLRLSEVLKLQPGDVLPIEKP--EKLIANVDGVPVLTCQYGSQNGQYALRVERLI 323
Query: 305 NF 306
N
Sbjct: 324 NP 325
>gi|149188092|ref|ZP_01866387.1| flagellar motor switch protein M [Vibrio shilonii AK1]
gi|148838080|gb|EDL55022.1| flagellar motor switch protein M [Vibrio shilonii AK1]
Length = 349
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 91/301 (30%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + + + ++S Q
Sbjct: 33 DVVHFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMM 86
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF ++ + I LV L+EN G ++ R +
Sbjct: 87 KFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + + + S E E + + ++
Sbjct: 147 PTERRIIQLLMKTVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F +++P + + + Q+ + + VN +
Sbjct: 205 EVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLL 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K +L+D++ L+ G +IP E A + + ++GR G+ ++I+++I
Sbjct: 265 EKDVSLRDLMELQAGDIIPIDMPEN--ATMFVEELPTFRVKMGRTGEKVAVQISEKIRRP 322
Query: 308 Q 308
Sbjct: 323 D 323
>gi|170725980|ref|YP_001760006.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
gi|169811327|gb|ACA85911.1| flagellar motor switch protein FliM [Shewanella woodyi ATCC 51908]
Length = 342
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 94/297 (31%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L M ++S Q KF
Sbjct: 35 YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 88
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+H+ + + I LV L++N G ++ R + E+
Sbjct: 89 YVHTLFVPTSLNMVRFNPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 148
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + I + + + E V + ++ ++
Sbjct: 149 RIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVISSFHIEVDG 206
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F + +P + + + Q+ +++ + +NV +D + +
Sbjct: 207 GGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVNVGLDATVVEHQI 266
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
TLKDV+ LK G +IP IL + C+LG+ N +R+ +I +
Sbjct: 267 TLKDVMELKQGDIIPVELP--EHIILRVEDLPTFRCKLGKARDNLALRVIQKIPRPE 321
>gi|296103565|ref|YP_003613711.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058024|gb|ADF62762.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 334
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 93/301 (30%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 32 DSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIR 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + N N+ V
Sbjct: 146 FTHTEQRVINRMLKLALESYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + +P + + ++ + S ++ ++ + R+ + +
Sbjct: 205 HVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRENLVRQVQHSQLELVAS 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 265 FADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTINGQYALRVEHLIN 322
Query: 306 F 306
Sbjct: 323 P 323
>gi|294140210|ref|YP_003556188.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
gi|293326679|dbj|BAJ01410.1| flagellar motor switch protein FliM [Shewanella violacea DSS12]
Length = 343
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 47/297 (15%), Positives = 96/297 (32%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L M ++S Q KF
Sbjct: 36 YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 89
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+H+ + S I LV L++N G ++ R + E+
Sbjct: 90 YVHTLFVPTSLNMVRFSPLKGTGLITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 149
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + I + + E E V + ++ ++
Sbjct: 150 RIVQLLLKIIFEDYKDAWAPVMDVE--FEYLDSEVNPAMANIVSPTEVVVVSSFHIEVDG 207
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F + +P + + + Q+ +++ + ++V ID I ++
Sbjct: 208 GGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSLALKDEIMDIDVGIDATIVEQQI 267
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
TLKDV+ K G +IP +L Y C+LG+ N +RIT++I +
Sbjct: 268 TLKDVMEFKAGDIIPVELP--EHIVLRVEDLPTYRCKLGKTRDNLALRITEKIPRPE 322
>gi|193066386|ref|ZP_03047434.1| flagellar motor switch protein FliM [Escherichia coli E22]
gi|192925971|gb|EDV80617.1| flagellar motor switch protein FliM [Escherichia coli E22]
Length = 334
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKALNPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|15802380|ref|NP_288406.1| flagellar motor switch protein FliM [Escherichia coli O157:H7
EDL933]
gi|12516052|gb|AAG56960.1|AE005417_2 flagellar biosynthesis, component of motor switch and energizing,
enabling rotation and determining its direction
[Escherichia coli O157:H7 str. EDL933]
Length = 334
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGX 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|291617855|ref|YP_003520597.1| FliM [Pantoea ananatis LMG 20103]
gi|291152885|gb|ADD77469.1| FliM [Pantoea ananatis LMG 20103]
gi|327394272|dbj|BAK11694.1| flagellar motor switch protein FliM [Pantoea ananatis AJ13355]
Length = 335
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 40/306 (13%), Positives = 92/306 (30%), Gaps = 10/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ + P P R+ + + + + + + DIS
Sbjct: 27 KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMALFNLLRRSPDIS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + L + S +LV ++NL G +
Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ +R + + + N N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
+ I N+ F + IP + + ++ + S ++ D ++ +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLREMLVNPPLENSRSEDTHWRDNLVKQVQHSEL 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L V+ LK G V+P I +G + + + G + Y +R+
Sbjct: 260 ELIAHFAETSLRLSRVLQLKPGDVLPIEKP--ERIIAHVDGVPVLTSQYGTLNGQYALRV 317
Query: 301 TDRINF 306
IN
Sbjct: 318 EHLINP 323
>gi|328948403|ref|YP_004365740.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
2489]
gi|328448727|gb|AEB14443.1| flagellar motor switch protein FliM [Treponema succinifaciens DSM
2489]
Length = 344
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 49/314 (15%), Positives = 113/314 (35%), Gaps = 10/314 (3%)
Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
G+S P+ I + K + S++ + + ++ V
Sbjct: 19 TGESEADEFKPVTDTRRIKIYDFRRPDKFSKEQIRTVSNMHETFARLTTTSLSAQLRTLV 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+ S + I S + ++ N + + + +++ L G S +T
Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPTTLAVINMDPLKGNAVLEIAPEITFIIIDRLFGGSGDT 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ NR L+ +E+ + + I +I A + + + + P L+ + +
Sbjct: 139 GGKV-NRDLTDIEQSVMEGIIVRILANMREAWTQVIDLRPRLQQIET--NPQFAQIVPPS 195
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
E V + + + I A + IP T+ + + + + K
Sbjct: 196 EMVILVTLEIKIGEEAGMMNICIPYITIEPIVSKLSSSFWFSSVRRSSTTQYLGTLKEKL 255
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGK 294
+ + + I ++DV++L+ G VI + LS K+ + C+ G VGK
Sbjct: 256 ADVEMELVADIGSINVPIRDVLSLRTGDVIRLNTIKVGEPLTLSVGSKKKFYCQPGVVGK 315
Query: 295 NYTIRITDRINFDQ 308
++I ++I+ +
Sbjct: 316 KVAVQIIEKIDEQE 329
>gi|238798578|ref|ZP_04642055.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
43969]
gi|238717598|gb|EEQ09437.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
43969]
Length = 334
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + I N N+ V T
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|154686048|ref|YP_001421209.1| flagellar motor switch protein FliM [Bacillus amyloliquefaciens
FZB42]
gi|154351899|gb|ABS73978.1| FliM [Bacillus amyloliquefaciens FZB42]
Length = 332
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 39/286 (13%), Positives = 93/286 (32%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F K+ + IS +S + I S + +
Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAKLRTYIHISVSSVDQVPYEEFIRSIPNMTILNLFD 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + +L+ ++G T + + L+ +E +
Sbjct: 109 VHPMEGRIMMEVNPTIAYAMLDRVMGGIGITHNKADS--LTEIETNIISNLFENALGNYK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P E + NE V I++N I ++ L IP L
Sbjct: 167 EAWQSIADIDP--EMTEFEVNPQFVQMVSPNETVVVISLNTQIGEISGVINLCIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + ++ + + + + T+++ ++L++G
Sbjct: 225 PIIPKLSVHYWMQSDRNEAKPEETKLLEKRIMTAQIPVVALLGASELTIEEFLSLEVGDC 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
I + K + + GRV + ++I D I +Q
Sbjct: 285 ITLDKSVTDPLTVLVGNKPKFLGQAGRVNRRQAVQILDHDIRGEQD 330
>gi|300717238|ref|YP_003742041.1| flagellar motor switch protein [Erwinia billingiae Eb661]
gi|299063074|emb|CAX60194.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
Length = 335
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 32 DNDIRPYDPNTQRRMV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + ++ + N N+ V T
Sbjct: 146 FTATEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVITTPF 204
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
+ I N+ F + IP + ++ + S + ++ D ++ + +
Sbjct: 205 QVEIGNLVGEFNICIPFSMIEPLRETLVNPPLENSRQEDQNWRDTLVKQVQHSELELIAN 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ LK G V+P I +G + + + G + Y +R+ IN
Sbjct: 265 FGEVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 322
Query: 306 F 306
Sbjct: 323 P 323
>gi|254506968|ref|ZP_05119107.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
gi|219550253|gb|EED27239.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 16]
Length = 349
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 90/305 (29%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ + R+ + + + + + ++S
Sbjct: 29 ASDSSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSING 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF ++ + I LV L+EN G ++
Sbjct: 83 VQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + + + S E E +
Sbjct: 143 REFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVS 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F +++P + + + Q+ + + VN
Sbjct: 201 SFHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFR 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + +L+D++ L+ G +IP A + Y ++GR G ++++++
Sbjct: 261 VNLLEQDISLRDLMELRPGDIIPISMP--EHATMFVEELPTYRVKMGRSGDKLAVQVSEK 318
Query: 304 INFDQ 308
I
Sbjct: 319 IKRPD 323
>gi|218133674|ref|ZP_03462478.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
43243]
gi|217991049|gb|EEC57055.1| hypothetical protein BACPEC_01543 [Bacteroides pectinophilus ATCC
43243]
Length = 327
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 98/293 (33%), Gaps = 7/293 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + + + L + V + + + +S ++
Sbjct: 39 DFARPSKFSKEHLRTLEIIFEHFGRLLATNLPGYLRKTVSVDVVNSEVVIYSEFSNALSN 98
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ ++ N + ++NL +++ LLG S T+ + R S +E + +R
Sbjct: 99 PVLLGVVTMPPLKGNIIMEMASNLGYAIIDRLLGGSGNTMDK--ARDFSEIELTILERIF 156
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+L + ++SP LE + +E + + +++ I V +
Sbjct: 157 TICVNLLQEPWQNVVQTSPRLERIET--NSQFAQIISPSETIAIVTLSIKIGEVEGLMNI 214
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P TL + + D + + + + + ++ D
Sbjct: 215 CLPFVTLEPVMDKLNTKYWFSTLQDKDDQSYQDAIESLIDRAQIPMKAVLGHSRISVGDF 274
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V L++G +I + + + ++ G Y IRIT+ I + +
Sbjct: 275 VNLQLGDIIRLDRKVDDELEVYVGNIKKFAALPGYSEDKYAIRITEVIKEESE 327
>gi|30063384|ref|NP_837555.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
2457T]
gi|56480007|ref|NP_707830.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301]
gi|30041636|gb|AAP17364.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
2457T]
gi|56383558|gb|AAN43537.2| flagellar motor switch protein FliM [Shigella flexneri 2a str. 301]
gi|313650167|gb|EFS14580.1| flagellar motor switch protein FliM [Shigella flexneri 2a str.
2457T]
gi|332757511|gb|EGJ87846.1| flagellar motor switch protein FliM [Shigella flexneri K-671]
gi|333017577|gb|EGK36889.1| flagellar motor switch protein FliM [Shigella flexneri K-304]
Length = 334
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|127512304|ref|YP_001093501.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
gi|126637599|gb|ABO23242.1| flagellar motor switch protein FliM [Shewanella loihica PV-4]
Length = 341
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 98/304 (32%), Gaps = 5/304 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ S + + + + + + L M ++S
Sbjct: 21 EEEEVSDALDARAYDFSSQDRIVRGRMPTLEIVNERFARHLRISMFNMMRRAAEVSINGV 80
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF +H+ + S I LV L++N G ++ R
Sbjct: 81 QMLKFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGR 140
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + I + + + + E V +
Sbjct: 141 EFTPTERRIVQLLLKIIFEDYKEAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSS 198
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F + +P + + + Q+ +++ + + V +D
Sbjct: 199 FHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVEVGLDA 258
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
I K+ +LKDV+ K G +IP +L Y C+LGR +N + I ++I
Sbjct: 259 TIVEKEISLKDVMGFKAGDIIPVEMP--EYIVLRVEDLPTYRCKLGRSRENLALNIREKI 316
Query: 305 NFDQ 308
+
Sbjct: 317 PRPE 320
>gi|332756101|gb|EGJ86454.1| flagellar motor switch protein FliM [Shigella flexneri 4343-70]
gi|332757253|gb|EGJ87590.1| flagellar motor switch protein FliM [Shigella flexneri 2747-71]
gi|332766683|gb|EGJ96887.1| flagellar motor switch protein FliM [Shigella flexneri 2930-71]
gi|333003346|gb|EGK22892.1| flagellar motor switch protein FliM [Shigella flexneri K-218]
Length = 334
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|121596087|ref|YP_987983.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
gi|222112243|ref|YP_002554507.1| flagellar motor switch protein flim [Acidovorax ebreus TPSY]
gi|120608167|gb|ABM43907.1| flagellar motor switch protein FliM [Acidovorax sp. JS42]
gi|221731687|gb|ACM34507.1| flagellar motor switch protein FliM [Acidovorax ebreus TPSY]
Length = 334
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 39/300 (13%), Positives = 93/300 (31%), Gaps = 11/300 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
R+ + + + + +IS + +
Sbjct: 35 VRNYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNFIRRSPEISVGTVSVQR 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
+S + F+ ++ + + C +LV +++ L G + ++ R S
Sbjct: 89 YSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGVGKFQTRIEGRDFSA 148
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E+++ R + I A + + + +E V + +
Sbjct: 149 TEQRVINRLVDVICAEYKKAWQGIYPLELAYQRSEM--QPQFANIATPSEIVVSTAFQLE 206
Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
I ++A + + +P TL + S Q + + R+ V + +
Sbjct: 207 IGDLAGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVRVLTREIQAAEVTLVAELAR 266
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
T++ ++ +K G I S G ++ C+ G Y IRI + + +
Sbjct: 267 ADATVEQLLAMKPGDFIELEREP--RIRASIEGVPVFECQYGTHNSKYAIRIEECLRGAE 324
>gi|121997289|ref|YP_001002076.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1]
gi|121588694|gb|ABM61274.1| flagellar motor switch protein FliM [Halorhodospira halophila SL1]
Length = 381
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P R+ + + + + ++S T +
Sbjct: 34 ELRPYTFTAEERIVRG------RMPTLEMINERFGRLFRIGLFNMLRRTPEVSVTGVEMM 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + + + LV +++N G ++ R +
Sbjct: 88 KFGEYVHTLFVPTSLNIIRVPPLRGSGLFVIDPKLVFLVVDNFFGGGGHFYLKVEGREFT 147
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + Q L + + E + E V ++
Sbjct: 148 PTEQRVIRLMLDQAFDDLREAWNPVLGVD--FEYVNMEVNPQFANIVSPTEVVVVSKFHV 205
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P + I + Q+ + + + V + + +
Sbjct: 206 ELDGGGGDIHVTLPYTMVEPIREILDAGVQSDRNDVDDRWAKALREEMKTAPVTLHSTLA 265
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TL+D++ LK G VIP E+ + ++ G N +RI +++
Sbjct: 266 RSEITLRDLMHLKAGDVIPIEMPERVVVEVEE--VPVFYGTYGVCEGNAALRIDEKVQAP 323
Query: 308 QK 309
++
Sbjct: 324 ER 325
>gi|332140589|ref|YP_004426327.1| flagellar motor switch protein FliM [Alteromonas macleodii str.
'Deep ecotype']
gi|327550611|gb|AEA97329.1| flagellar motor switch protein FliM [Alteromonas macleodii str.
'Deep ecotype']
Length = 352
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 41/300 (13%), Positives = 90/300 (30%), Gaps = 11/300 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+T R+ + + + + M ++S
Sbjct: 30 SDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGI 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF IH+ + I LV L++N G ++ R
Sbjct: 84 QMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + I + + + + E E V +
Sbjct: 144 EFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISS 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F + +P L + + Q+ E+ + + V + T
Sbjct: 202 FHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVALTT 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ L+DV+ K G +IP + + +LGR N ++I ++I
Sbjct: 262 HMLDVDVPLRDVMEFKPGDIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIVEKI 319
>gi|167623386|ref|YP_001673680.1| flagellar motor switch protein FliM [Shewanella halifaxensis
HAW-EB4]
gi|167353408|gb|ABZ76021.1| flagellar motor switch protein FliM [Shewanella halifaxensis
HAW-EB4]
Length = 342
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M ++S Q
Sbjct: 31 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + S I LV L++N G ++ R +
Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + E V + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKDAWAPVMDVQ--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ +++ + ++V ID I
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K TLK V+ K G VIP IL Y C++GR +N ++I ++I
Sbjct: 263 EHKVTLKQVLEFKAGDVIPVELP--EYIILKVEDLPTYRCKMGRTKENLALKICEQIPRP 320
Query: 308 Q 308
+
Sbjct: 321 E 321
>gi|323496548|ref|ZP_08101602.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
gi|323318392|gb|EGA71349.1| flagellar motor switch protein FliM [Vibrio sinaloensis DSM 21326]
Length = 349
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 91/304 (29%), Gaps = 11/304 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ R+ + + + + + ++S
Sbjct: 30 SDTSAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF ++ + I LV L+EN G ++ R
Sbjct: 84 QMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + + + S E E + +
Sbjct: 144 EFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSS 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F +++P + + + Q+ + + VN
Sbjct: 202 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRV 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + +L+D++ L+ G +IP A + + ++GR G+N ++++++I
Sbjct: 262 NLLEQDISLRDLMELQPGDIIPITMP--EHATMFVEELPTFRVKMGRSGENLAVQVSEKI 319
Query: 305 NFDQ 308
Sbjct: 320 KRPD 323
>gi|297530595|ref|YP_003671870.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
gi|297253847|gb|ADI27293.1| flagellar motor switch protein FliM [Geobacillus sp. C56-T3]
Length = 334
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 7/289 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V IS S + + S + + +
Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N+ +L+ ++G + ++ + L+ +E ++ +
Sbjct: 110 VPPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVYWR 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P DF + N+ V I++N I + IP L
Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q + + +S + ++ + I + T+ + + L+ G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
I ++ + + G+ K ++I I D+
Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDKDDHDE 334
>gi|56419765|ref|YP_147083.1| flagellar motor switch protein FliM [Geobacillus kaustophilus
HTA426]
gi|261419430|ref|YP_003253112.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
gi|319766245|ref|YP_004131746.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
gi|56379607|dbj|BAD75515.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
gi|261375887|gb|ACX78630.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC61]
gi|317111111|gb|ADU93603.1| flagellar motor switch protein FliM [Geobacillus sp. Y412MC52]
Length = 334
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 7/289 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V IS S + + S + + +
Sbjct: 50 SKDQIRSLTRIHENFARLLTTFFSAQLRTYVQISVASADQIPYEEFVRSIPKMTIINVFE 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N+ +L+ ++G + ++ + L+ +E ++ +
Sbjct: 110 VPPLGGHVLLEVNPNIAYAMLDRVMGGRGVGMDKVEH--LTEIETRIMSNLFDKAFVHWR 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P DF + N+ V I++N I + IP L
Sbjct: 168 DAWESVAEVDPLFVDFEV--NPQFLRMIAPNDTVVVISLNTQIGEARGMMNVCIPHVVLE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q + + +S + ++ + I + T+ + + L+ G V
Sbjct: 226 PIMPRLSVHYWMQAQKKERSPEEAKRIEQRIRAAKLPIIAELGTAVITVNEFLQLEAGDV 285
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
I ++ + + G+ K ++I I D+
Sbjct: 286 IQLEQSIHEPLVVKIGHIPKFIGQPGKRNKKLAVQILAMIEGDEDDHDE 334
>gi|238920318|ref|YP_002933833.1| flagellar motor switch protein FliM [Edwardsiella ictaluri 93-146]
gi|238869887|gb|ACR69598.1| flagellar motor switch protein FliM, putative [Edwardsiella
ictaluri 93-146]
Length = 337
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 97/304 (31%), Gaps = 10/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ P P R+ + + + + + + DI+
Sbjct: 31 ETHDGEVRPYDPTTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITVG 84
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + + + L + +LV ++NL G ++
Sbjct: 85 AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ + + S + I N N+ V T
Sbjct: 145 GREFTHTEQRVIQSMLRLALDAYRDAWSAIFKLDIEYVRSE-IQVKFTNITTSPNDIVVT 203
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242
+ + ++ F + IP + + ++ + S+ + + D +++ + +
Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIEPLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L DV+ L+IG V+P + + +G + +C+ G Y +R+
Sbjct: 264 VADFVDIPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321
Query: 303 RINF 306
IN
Sbjct: 322 MINP 325
>gi|121608105|ref|YP_995912.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
EF01-2]
gi|121552745|gb|ABM56894.1| flagellar motor switch protein FliM [Verminephrobacter eiseniae
EF01-2]
Length = 334
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L + +IS
Sbjct: 34 SVRNYDLSSQERIVRG------RMPTMEIVNERFARNLRIGLFNFIRRSPEISVGMVSVQ 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
++S + F+ ++ + + C +LV +++ L G + + ++ R S
Sbjct: 88 RYSAFLRELVVPTNFNIVAIRPLRGSGLVVCEPSLVFGIIDTLYGGAGKFQTRIEGRDFS 147
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ R + I A + LE + +E V + +
Sbjct: 148 PTEQRVINRLVDVICAEYKKAWQGIYPLE--LEYQRSEMQPQFANIATPSEIVVSTAFQL 205
Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
I ++ + + +P TL + S+Q S + R+ V + +
Sbjct: 206 EIGDLPGAIHMCMPYATLEPIRDVLYSSTQGDSIEVDRRWVRVLTREIQAAEVVLVAELA 265
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
T++ ++ LK G I + + G I+ C+ G Y IRI +
Sbjct: 266 RADATVEQLLALKPGDFIELERQP--RIRAAIGGVPIFECQYGTHNCRYAIRIEKCLRNA 323
Query: 308 Q 308
Sbjct: 324 D 324
>gi|292493590|ref|YP_003529029.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4]
gi|291582185|gb|ADE16642.1| flagellar motor switch protein FliM [Nitrosococcus halophilus Nc4]
Length = 349
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 42/307 (13%), Positives = 98/307 (31%), Gaps = 16/307 (5%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P R+ + + + L + +D++ + Q
Sbjct: 34 EEAVRPYDFSSEDRIVRA------RLPALEMINERFVRQLRRSLFNLFRRAIDVTVSGMQ 87
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH-----ETIPQ 121
KFS IH+ + +S LV +++N G S + +
Sbjct: 88 MVKFSEYIHTLFVPTSLNMVQMSPLQGTSLFVFDPKLVFMMVDNYFGGSGRAYARRSYAR 147
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E ++ + + ++ A L Q + E + T +E V
Sbjct: 148 IEGREFTPTEVRVVQLVLEKVFADLEQAWEPVLAV--HFEYLQAEPNPQFATIVSPSEVV 205
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNV 240
+ + F + +P L + Q+ S E K + V
Sbjct: 206 VVSTFFVEFDGGGGEFHITLPYAMLEPIRELLEVGRQSGSSQVDERWDQALQEKILEAEV 265
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + + +L++++ L+ G ++P + A+G ++ G NY +++
Sbjct: 266 ELSCTLAETQLSLREILALEPGDILPIELP--SILTAQADGVPVFRARYGVHNDNYALKV 323
Query: 301 TDRINFD 307
+ +
Sbjct: 324 VEPLPHQ 330
>gi|238751773|ref|ZP_04613261.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380]
gi|238710044|gb|EEQ02274.1| Flagellar motor switch protein fliM [Yersinia rohdei ATCC 43380]
Length = 334
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 85 IQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + I N N+ V T
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 HVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|238788326|ref|ZP_04632120.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC
33641]
gi|238723572|gb|EEQ15218.1| Flagellar motor switch protein fliM [Yersinia frederiksenii ATCC
33641]
Length = 334
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + I N N+ V T
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 HVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|313895914|ref|ZP_07829468.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975339|gb|EFR40800.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 137
str. F0430]
Length = 334
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + + L + V+I S + + + S V +
Sbjct: 49 SKDQIRTLFMLHESFSRLLNTYLSASLRTMVNIEVLSVEQMTYQEFVQSMANPAVIGIIA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L N I ++ ++ + G + P + +R+L+ +E + +R I +
Sbjct: 109 LPPLKGNIIIEVGPDIAFAYVDRVFGGEGK--PSVKSRALTDIESAVMRRFIDTVINYFR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E PN E + ++ V + ++M + +V + IP L
Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLVTIHMKLGDVEGMMNICIPYLVLE 224
Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S + S D + RK + V + T+ + +TL G
Sbjct: 225 PVMSKLTTSFWVAASVDRESSPDQVADLQRKIERTWVPFSVELGTVDITINEFLTLGFGD 284
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V+ K + + G GK ++I+ I D+
Sbjct: 285 VLQLDTLAKDELVCYVGTNAKFRAYPGTAGKRMAVQISGIIEGDED 330
>gi|24374733|ref|NP_718776.1| flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
gi|24349393|gb|AAN56220.1|AE015759_12 flagellar motor switch protein FliM [Shewanella oneidensis MR-1]
Length = 343
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 93/305 (30%), Gaps = 11/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
++ + R+ + + + L M ++S
Sbjct: 28 AVGQEARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSING 81
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +H+ + I LV L++N G ++
Sbjct: 82 VQMLKFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEG 141
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ + + I + + + E V
Sbjct: 142 REFTPTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVIN 199
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNID 243
+ ++ ++ F + +P + + + Q+ ++ + + V D
Sbjct: 200 SFHIEVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFD 259
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + TLKDV+ K G +IP ++ Y C++GR N ++I ++
Sbjct: 260 ATVVEHELTLKDVMNFKAGDIIPIELP--EYIMMRIEDLPTYRCKMGRSRDNLALKIYEK 317
Query: 304 INFDQ 308
I +
Sbjct: 318 IPRPE 322
>gi|16129892|ref|NP_416455.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|89108777|ref|AP_002557.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. W3110]
gi|170081589|ref|YP_001730909.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238901150|ref|YP_002926946.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253773106|ref|YP_003035937.1| flagellar motor switch protein FliM [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|120345|sp|P06974|FLIM_ECOLI RecName: Full=Flagellar motor switch protein FliM
gi|145981|gb|AAA23786.1| FlaAII protein [Escherichia coli]
gi|1736611|dbj|BAA15770.1| flagellar motor switching and energizing component [Escherichia
coli str. K12 substr. W3110]
gi|1788255|gb|AAC75012.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|169889424|gb|ACB03131.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238861113|gb|ACR63111.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253324150|gb|ACT28752.1| flagellar motor switch protein FliM [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448942|gb|ACX39364.1| flagellar motor switch protein FliM [Escherichia coli DH1]
gi|315136582|dbj|BAJ43741.1| flagellar motor switch protein FliM [Escherichia coli DH1]
Length = 334
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 93/303 (30%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLNPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|330826724|ref|YP_004390027.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
K601]
gi|329312096|gb|AEB86511.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
K601]
Length = 334
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 11/300 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
R+ + + + + +IS + +
Sbjct: 35 VRDYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNMIRRSPEISVGTVGVQR 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
++ + F+ ++ + I C +L+ +++ L G + ++ R S
Sbjct: 89 YNAFLRELVVPTNFNIVAIRPLRGSGLIVCEPSLLFGIIDTLYGGVGKLQTRIEGRDFSA 148
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E ++ +R + I + L + +E V + +
Sbjct: 149 TELRVIQRLVNLICEEYKKAWQGIYPLE--LSYQRSEMQPQFANIATPSEIVVSTAFQLE 206
Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
I +++ + + +P TL + S Q + + R+ V + +
Sbjct: 207 IGDLSGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVKVLTREIQAAEVTLVAELAR 266
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
T++ ++ +K G I S G ++ C+ G Y IRI +
Sbjct: 267 ADATVEQLLAMKPGDFIELDREP--RIRASIEGVPVFECQYGTHNAKYAIRIEQCLRGAD 324
>gi|194471387|ref|ZP_03077371.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194457751|gb|EDX46590.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
Length = 334
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 96/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y++R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYSLRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|94500287|ref|ZP_01306820.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
gi|94427586|gb|EAT12563.1| flagellar motor switch protein FliM [Oceanobacter sp. RED65]
Length = 331
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 12/301 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ R+ + + ++ + D++ Q
Sbjct: 31 EGIKSYDLSSQDRIVRG------RMPTLEMINERFARYTRISMFNFLRRSADVASGGIQI 84
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF IH+ + + LV L++N G ++ R
Sbjct: 85 MKFGEYIHTLYVPTSLNMVKVRPLRGTALFIFDAKLVFKLVDNFFGGDGR-HAKIEGREF 143
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E ++ + ++Q+ + + + E + +E V + +
Sbjct: 144 TPTELRVVQMVLSQVFTDMKEAWHAVLDLD--FEYYGSEVNPAMANIVSPSEVVVISSFH 201
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ + +P + + Q+ + + + V + +
Sbjct: 202 IELDGGGGDLHVALPYSMIEPIREFLDAGVQSDVDEVDDRWVQSLQEDIQSAKVPVHGTV 261
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++ +L++V + G VIP E IL ANG I+ +LG N ++I + I
Sbjct: 262 VDREISLREVAAFQPGDVIPVDMPED--FILQANGTPIFRGQLGVRDDNLAVKIKEPIKR 319
Query: 307 D 307
Sbjct: 320 K 320
>gi|229522079|ref|ZP_04411496.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
gi|229341004|gb|EEO06009.1| flagellar motor switch protein FliM [Vibrio cholerae TM 11079-80]
Length = 349
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ + R+ + + + L + ++S Q
Sbjct: 32 PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF ++ + + LV L+EN G ++ R
Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + A + S E E + + +
Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ F +++P + + + Q+ + + VN +
Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEDLPTYRVKMGRSGEKLAVQVSEKIKR 321
Query: 307 DQ 308
Sbjct: 322 PD 323
>gi|157961196|ref|YP_001501230.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
700345]
gi|157846196|gb|ABV86695.1| flagellar motor switch protein FliM [Shewanella pealeana ATCC
700345]
Length = 342
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M ++S Q
Sbjct: 31 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + S I LV L++N G ++ R +
Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + E + E V + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMEVQ--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ +++ + ++V ID I
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATIV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
K TL++V+ K G VIP IL Y C++G+ N ++I ++I
Sbjct: 263 EHKLTLREVLEFKAGDVIPVELP--EHIILKVEDLPTYRCKMGKAKDNLALKICEKIPRP 320
Query: 308 Q 308
+
Sbjct: 321 E 321
>gi|302392382|ref|YP_003828202.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
5501]
gi|302204459|gb|ADL13137.1| flagellar motor switch protein FliM [Acetohalobium arabaticum DSM
5501]
Length = 333
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 39/307 (12%), Positives = 101/307 (32%), Gaps = 13/307 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ K+ +L K + + + + L ++ + + S
Sbjct: 32 TEEKSVKAYDFKHPDKL------SKDQLRTLRIIYENFARLLNTSLSTQLRTMIHVELNS 85
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + I S + + S + + F + + L ++E L G +
Sbjct: 86 IEQLSYDEFIRSLPQPTIMSICDFNPLAGEFILEINPRLGYAIVERLFGGQGTPPNNI-- 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + +E+ + K+ + Q + + + P +++ + N+ V
Sbjct: 144 RDFTDIEEMVLKKVLKQNLSAFVEAWENVIDLKPRIKNLE--SNPQFTQIVPGNDMVILA 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241
+ I + IP L ++ S + ++ + + +
Sbjct: 202 TFDAKIAEAEGLINVCIPYIVLEPIVSKLNAQYWFSTSRDSASSEELNKLKDRLSKAKLP 261
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + T+ D++ L+ G VI + A++ KE + + G VG I I+
Sbjct: 262 VIANLGTTNITVADLLDLQPGDVIRMDQKATKEAVVKVGNKEKFIGKPGVVGSKLAIEIS 321
Query: 302 DRINFDQ 308
++ ++
Sbjct: 322 SVLDKEE 328
>gi|333003041|gb|EGK22595.1| flagellar motor switch protein FliM [Shigella flexneri VA-6]
Length = 334
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVEFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G ++P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDILPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|262404472|ref|ZP_06081027.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
gi|262349504|gb|EEY98642.1| flagellar motor switch protein FliM [Vibrio sp. RC586]
Length = 349
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ + R+ + + + L + ++S Q
Sbjct: 32 PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF ++ + + LV L+EN G ++ R
Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + A + S E E + + +
Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ F +++P + + + Q+ + + VN +
Sbjct: 204 VEVDGGGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKR 321
Query: 307 DQ 308
Sbjct: 322 PD 323
>gi|283785715|ref|YP_003365580.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168]
gi|282949169|emb|CBG88777.1| flagellar motor switch protein FliM [Citrobacter rodentium ICC168]
Length = 334
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 95/305 (31%), Gaps = 10/305 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIAGESDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLREMLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ L+ G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLQPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 DRINF 306
IN
Sbjct: 319 HLINP 323
>gi|319764508|ref|YP_004128445.1| flagellar motor switch protein flim [Alicycliphilus denitrificans
BC]
gi|317119069|gb|ADV01558.1| flagellar motor switch protein FliM [Alicycliphilus denitrificans
BC]
Length = 334
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 37/300 (12%), Positives = 90/300 (30%), Gaps = 11/300 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
R+ + + + + +IS + +
Sbjct: 35 VRDYDISSQERIVRG------RMPTMEIVNERFARNFRIGLFNMIRRSPEISVGTVAVQR 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
++ + F+ ++ + I C +L+ +++ L G + ++ R S
Sbjct: 89 YNAFLRELVVPTNFNIVAIRPLRGSGLIVCEPSLLFGIIDTLYGGVGKLQTRIEGRDFSA 148
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E ++ +R + I + L + +E V + +
Sbjct: 149 TELRVIQRLVNLICEEYKKAWQGIYPLE--LSYQRSEMQPQFANIATPSEIVVSTAFQLE 206
Query: 190 IENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
I +++ + + +P TL + S Q + + R+ V + +
Sbjct: 207 IGDLSGAIHICMPYATLEPIRDVLYSSVQGDAIEVDRRWVKVLTREIQAAEVTLVAELAR 266
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
T++ ++ +K G I S G ++ C+ G Y IRI +
Sbjct: 267 ADATVEQLLAMKPGDFIELDREP--RIRASIEGVPVFECQYGTHNAKYAIRIEQCLRGAD 324
>gi|123442771|ref|YP_001006748.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332161335|ref|YP_004297912.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122089732|emb|CAL12585.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318605256|emb|CBY26754.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665565|gb|ADZ42209.1| flagellar motor switch protein FliM [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861091|emb|CBX71358.1| flagellar motor switch protein fliM [Yersinia enterocolitica
W22703]
Length = 334
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + I N N+ V T
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|33596151|ref|NP_883794.1| flagellar motor switch protein FliM [Bordetella parapertussis
12822]
gi|33573154|emb|CAE36805.1| flagellar motor switch protein FliM [Bordetella parapertussis]
Length = 336
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 32/310 (10%), Positives = 92/310 (29%), Gaps = 9/310 (2%)
Query: 4 QSIHKNTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ R L+ + + + + + + + M + DI
Sbjct: 21 GESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + K++ + + + NLV ++++L G
Sbjct: 81 TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHT 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R +T E+++ +R + + K + +NE
Sbjct: 141 RVEGRDFTTTEQRIIRRLLNLTLESYGKSWDPVYPIEFEYVRSEMHT--KFASITGNNEV 198
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS--ENQSEDLIDPFARKTYQL 238
V ++ + +P + + + E + +
Sbjct: 199 VVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTALEEVDQRWAQQLQSQVRSA 258
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
++++ +++ +++ +K G V+P +G + G Y +
Sbjct: 259 DIDLVAEFGHIPSSIGELMRMKTGDVLPIAVP--ETVTAHVDGVPLMEYGYGVFNGRYAL 316
Query: 299 RITDRINFDQ 308
R+ + IN+D
Sbjct: 317 RVQNLINYDD 326
>gi|323697919|ref|ZP_08109831.1| flagellar motor switch protein FliM [Desulfovibrio sp. ND132]
gi|323457851|gb|EGB13716.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
ND132]
Length = 325
Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats.
Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 13/303 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + M VDI+ S
Sbjct: 32 DTGVVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALANTMRKRVDINPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S S + N + + LV L+EN G + ++ R
Sbjct: 86 MSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGSQP-KVEGRD 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + +R + A + + E + + ++ V +
Sbjct: 145 FTPIEQAIVERVVKIALANMEESWKPVHEVHVEMVR--TEVNPQFAAIVPPSDVVIVVTF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +EN S ++ +P T+ S Q++ I+ F + + V + R
Sbjct: 203 EVELENAIGSLIVCLPYATMEPIRSKLHASFQSERLEVDHVWINRFKERLMETPVEMVVR 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + + ++ L+ G +I E G + GRV N + ++ I
Sbjct: 263 LGRTSISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKFQGLPGRVKGNKSFKV---IK 319
Query: 306 FDQ 308
++
Sbjct: 320 EEE 322
>gi|157371194|ref|YP_001479183.1| flagellar motor switch protein FliM [Serratia proteamaculans 568]
gi|157322958|gb|ABV42055.1| flagellar motor switch protein FliM [Serratia proteamaculans 568]
Length = 333
Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S P P R+ + + + + + DI+
Sbjct: 29 SNESEVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L+ + +LV ++NL G ++
Sbjct: 83 IKIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ KR + S + + + N N+ V T
Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVRAE-MQVKFTNITTSPNDIVVTT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 202 PFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELI 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 262 ANFVDIPMRLSKILKLQPGDVLPIDKP--DRLIAHVDGVPVLTSQYGTLNGQYALRVEHL 319
Query: 304 INF 306
IN
Sbjct: 320 INP 322
>gi|242238988|ref|YP_002987169.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703]
gi|242131045|gb|ACS85347.1| flagellar motor switch protein FliM [Dickeya dadantii Ech703]
Length = 343
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 10/302 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
S + P P R+ + + + + + DI+
Sbjct: 28 SAASADSDIKPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNLLRRSPDIT 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + L S +LV ++NL G +
Sbjct: 82 AGPIKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFSPSLVFIAVDNLFGGDGRFPTK 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ KR + + + + N N+ V
Sbjct: 142 VEGREFTHTEQRVVKRMLRLALDAYGDAWNAIYKLDVEYVRSE-MQVKFTNITTSPNDIV 200
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
T ++ I N+ F + IP + + ++ + S + ++ + A++ +
Sbjct: 201 VTTPFHVEIGNLTGEFNICIPFAMIEPLRELLVNPPLENSRQEDQNWRETLAKQVQHSEL 260
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L V+ LK G V+P + +G + + + G Y +R+
Sbjct: 261 ELVANFVDIPLRLSKVLKLKPGDVLPIEKP--ESLVAHVDGVPVLTGQYGTFKGQYALRV 318
Query: 301 TD 302
Sbjct: 319 ER 320
>gi|153834156|ref|ZP_01986823.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
gi|156975423|ref|YP_001446330.1| flagellar motor switch protein FliM [Vibrio harveyi ATCC BAA-1116]
gi|148869526|gb|EDL68524.1| flagellar motor switch protein FliM [Vibrio harveyi HY01]
gi|156527017|gb|ABU72103.1| hypothetical protein VIBHAR_03154 [Vibrio harveyi ATCC BAA-1116]
Length = 348
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 11/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
++ R+ + + + + + ++S Q
Sbjct: 31 DESAVSFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF ++ + I LV L+EN G ++ R
Sbjct: 85 MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + + + S E E + +
Sbjct: 145 FTPTERRIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ ++ F +++P + + + Q+ + VN
Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVN 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ K +L+D++ L+ G VIP A + Y ++GR ++I++ I
Sbjct: 263 LLEKDISLRDLMELQPGDVIPIEMP--EHATMFIEDLPTYRVKMGRSEDKMAVQISEEIE 320
Query: 306 F 306
Sbjct: 321 R 321
>gi|157692311|ref|YP_001486773.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
gi|194014958|ref|ZP_03053575.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
gi|157681069|gb|ABV62213.1| flagellar motor switch protein FliM [Bacillus pumilus SAFR-032]
gi|194013984|gb|EDW23549.1| flagellar motor switch protein FliM [Bacillus pumilus ATCC 7061]
Length = 332
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ + I+ +S + I S + +
Sbjct: 49 SKDQIRSLTRIHDNFARLLTTHFSAQLRSYIQITVSSVDQVPYEEFIRSIPNMTLLNLFY 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+S + + + +++ L+G + + + L+ +E K+
Sbjct: 109 VSPLEGRIMLEVNPTIGYAMMDRLMGGIGISHNKTES--LTEIETKIISNMFEGALENYR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P E + NE V I++N I V+ L IP L
Sbjct: 167 EAWQSITDIEP--EMADFEVNPQFVQMVSPNETVVVISLNTQIGEVSGVINLCIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q++ + ++ + + + + T+++ + L+IG
Sbjct: 225 PIIPKLSVHYWMQSERNEPKQQETKAIEKRIMTAKIPVVAELGESEMTVEEFLNLEIGDC 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
I + K + + GRV + I+I D I ++
Sbjct: 285 IALDKPVNAPLTVMVGNKPKFLGQAGRVNRKQAIQILDHDIRGEED 330
>gi|113969632|ref|YP_733425.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
gi|114046862|ref|YP_737412.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
gi|113884316|gb|ABI38368.1| flagellar motor switch protein FliM [Shewanella sp. MR-4]
gi|113888304|gb|ABI42355.1| flagellar motor switch protein FliM [Shewanella sp. MR-7]
Length = 343
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + + L M ++S Q
Sbjct: 32 EARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + I LV L++N G ++ R +
Sbjct: 86 KFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 145
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + E V + ++
Sbjct: 146 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVINSFHI 203
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ ++ + + V D +
Sbjct: 204 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDATVV 263
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TLKDV+ K G +IP ++ Y C++GR N ++I ++I
Sbjct: 264 EHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRP 321
Query: 308 Q 308
+
Sbjct: 322 E 322
>gi|238764404|ref|ZP_04625354.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC
33638]
gi|238697430|gb|EEP90197.1| Flagellar motor switch protein fliM [Yersinia kristensenii ATCC
33638]
Length = 334
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 10/302 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ P P R+ + + + + + DI+
Sbjct: 30 SETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPI 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + L + +LV ++NL G ++ R
Sbjct: 84 KIQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ R + + + I N N+ V T
Sbjct: 144 EFTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTP 202
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDT 244
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 203 FQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVA 262
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L ++ L+ G V+P I +G + + + G + Y +R+ I
Sbjct: 263 NFVDIPLRLSQILKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHLI 320
Query: 305 NF 306
N
Sbjct: 321 NP 322
>gi|119775425|ref|YP_928165.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
gi|119767925|gb|ABM00496.1| flagellar motor switch protein FliM [Shewanella amazonensis SB2B]
Length = 342
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 92/301 (30%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M ++S Q
Sbjct: 31 SARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + I LV L++N G ++ R +
Sbjct: 85 KFGEYVHTLFVPTSLNMVRFQPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + E V + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVNSFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ ++ + + V + +
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALKDEIMDVEVGFEATVV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ +L+DV+ ++ G VIP ++ Y C+LG+ + ++I ++I
Sbjct: 263 EHQISLRDVMEMQAGDVIPVELP--EYVLMKIEELPTYRCKLGKSREQLALKICEKIPRP 320
Query: 308 Q 308
+
Sbjct: 321 E 321
>gi|307718611|ref|YP_003874143.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
6192]
gi|306532336|gb|ADN01870.1| hypothetical protein STHERM_c09230 [Spirochaeta thermophila DSM
6192]
gi|315186376|gb|EFU20136.1| flagellar motor switch protein FliM [Spirochaeta thermophila DSM
6578]
Length = 341
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 5/286 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + + + ++ V + S + I S +
Sbjct: 48 SKEQIRTISIMHETFARLTTTSLSAQLRSLVQVHVASVDQLTYEEFIRSIPNPTTIGIIN 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + ++++ L G + +R LS +E + + + +I +
Sbjct: 108 MDPLKGSAILEIDPTITYSIIDRLFGGPGDGSVVPRDRDLSDIETTVMEGIMVRILGNMR 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P L + E V + + + +V IP T+
Sbjct: 168 EAWSQVIDLRPRLGQIDT--NPQFAQIVPPTEMVVLVTLETKVGDVEGMMNFCIPYLTIE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + + + + + VN+ + ++D+++++ G V
Sbjct: 226 PIISKLSAQYWYSSVRKGGTTENLAILKERISSVEVNLVVEVGSMNLKMRDILSIQKGDV 285
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
I R K +L + + C GRVGK +++ ++I Q+
Sbjct: 286 IMLPTRVKEPLVLKIENRPKFYCRPGRVGKKLAVQLVEKIEESQEV 331
>gi|317048606|ref|YP_004116254.1| flagellar motor switch protein FliM [Pantoea sp. At-9b]
gi|316950223|gb|ADU69698.1| flagellar motor switch protein FliM [Pantoea sp. At-9b]
Length = 335
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DIS + +
Sbjct: 32 DGDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMALFNLLRRSPDISVGAIK 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 86 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 145
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + + + N N+ V
Sbjct: 146 FTHTEQRVIRRMLKLALEGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIVVNTPF 204
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
+ I N+ F + IP + + ++ + S + D ++ + +
Sbjct: 205 QVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSELELIAH 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ LK G V+P I +G + + + G + Y +R+ IN
Sbjct: 265 FADVSLRLSRILQLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 322
Query: 306 F 306
Sbjct: 323 P 323
>gi|238758098|ref|ZP_04619278.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236]
gi|238703636|gb|EEP96173.1| Flagellar motor switch protein fliM [Yersinia aldovae ATCC 35236]
Length = 334
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 ETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 85 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R + + + I N N+ V T
Sbjct: 145 FTHTEQRVINRMLRLALDAYRDAWAPIYKIDVEYVRSE-IQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSHWRETLVKQVQHSELELVAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPLRLSQILKLQPGDVLPIDKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|225620315|ref|YP_002721572.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
WA1]
gi|296126963|ref|YP_003634215.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
12563]
gi|225215134|gb|ACN83868.1| flagellar motor switch protein FliM [Brachyspira hyodysenteriae
WA1]
gi|296018779|gb|ADG72016.1| flagellar motor switch protein FliM [Brachyspira murdochii DSM
12563]
Length = 343
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 44/319 (13%), Positives = 101/319 (31%), Gaps = 13/319 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ H+ + K + + + + ++ V I
Sbjct: 32 EVEHRKIKIYDFKRPDKF------SKDQIRTLQMMHENFARVTTTSLSAQLRTLVGIHVA 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + I S + S+ + + ++ T+++ L G E+ +
Sbjct: 86 SVDQLTYEEFIRSVSNPSTLAIVSMDPLKGSSILEIDPSITFTIIDRLFGGPGESP-KNL 144
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
NR L+ +E + + I +I L + S + P L + N+ V
Sbjct: 145 NRELTDIELSVMEGIIVRILGNLREAWSQVIDLRPRLGSIET--NPQFAQMVSPNDMVVL 202
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240
I + + +V IP T+ + + + + K + V
Sbjct: 203 ITLETKVADVEGMMNFCIPYITIEPILSKFSAQYWYASIRRGSTSENLKIIKEKLQNIFV 262
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + L D++ L+ G V+ F + I ++ + C G G ++
Sbjct: 263 ETSAELGSMQLPLSDILNLQKGDVVKFTDTKITDPVIFKIGNRKKFLCRPGISGSRMAVQ 322
Query: 300 ITDRINFDQKSLKNFLHKR 318
+T ++ + ++ L K
Sbjct: 323 LTGVMDGEADITEDDLLKE 341
>gi|261407972|ref|YP_003244213.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
gi|329929322|ref|ZP_08283075.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
gi|261284435|gb|ACX66406.1| flagellar motor switch protein FliM [Paenibacillus sp. Y412MC10]
gi|328936691|gb|EGG33134.1| flagellar motor switch protein FliM [Paenibacillus sp. HGF5]
Length = 332
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 41/316 (12%), Positives = 103/316 (32%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + ++L F ++ V I
Sbjct: 27 LKKEETQKKIRSYDFKRALRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I S + V + + N+ +L+ LLG +
Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTVLNIFEAEPLVGRMVLEVHPNIAYAMLDRLLGGTGIAPS 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ + ++ +E + +R ++ L + T + SP LE + NE
Sbjct: 141 SISS--MTEIETIIMERIFSRAFDSLQEAWKTVLDISPRLEALET--NPQFMQIVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + L IP L ++ + + +D ++ +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVLEPIMSKLSAHQWFISEKKASVPEEVDALKQRVSK 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + + + T+ + + L +G VI + K + G +
Sbjct: 257 AKLPIVAELGVSQLTVSEFLGLSVGDVISLNKPMHDGLSIKVGDKLKFIGSPGTIKDRVA 316
Query: 298 IRITDRINFDQKSLKN 313
++I + + +
Sbjct: 317 VQIDEIVIEGAEEFDE 332
>gi|312172110|emb|CBX80367.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC
BAA-2158]
Length = 336
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + ++ + N N+ V T
Sbjct: 147 FTHTEQRVIRRMLKLALESYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + IP + ++ ++ + E+ D ++ + +
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVAN 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ LK G V+P I +G + + + G + K Y +R+ IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323
Query: 306 F 306
Sbjct: 324 P 324
>gi|261252329|ref|ZP_05944902.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
gi|260935720|gb|EEX91709.1| flagellar motor switch protein FliM [Vibrio orientalis CIP 102891]
Length = 349
Score = 241 bits (616), Expect = 7e-62, Method: Composition-based stats.
Identities = 33/304 (10%), Positives = 91/304 (29%), Gaps = 11/304 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ R+ + + + + + ++S
Sbjct: 30 TDASAVEFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGV 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF ++ + I LV L+EN G ++ R
Sbjct: 84 QMMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + + + S E E + +
Sbjct: 144 EFTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSS 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F +++P + + + Q+ + + VN
Sbjct: 202 FHIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRV 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ + +L+D++ L+ G +IP A + + ++GR G+ ++++++I
Sbjct: 262 QLLEQDISLRDLMELQPGDIIPINMP--EHATMFVEELPTFRTKMGRSGELLAVQVSEKI 319
Query: 305 NFDQ 308
Sbjct: 320 KRPD 323
>gi|325273547|ref|ZP_08139778.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
gi|324101325|gb|EGB98940.1| flagellar motor switch protein FliM [Pseudomonas sp. TJI-51]
Length = 322
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E +E V ++ ++ + +P +
Sbjct: 169 QAIMPV--SFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L ANG + LG N ++I D I
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321
>gi|26991047|ref|NP_746472.1| flagellar motor switch protein FliM [Pseudomonas putida KT2440]
gi|148546747|ref|YP_001266849.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
gi|24986079|gb|AAN69936.1|AE016632_7 flagellar motor switch protein FliM [Pseudomonas putida KT2440]
gi|5921670|gb|AAD56294.1| FliM [Pseudomonas putida]
gi|148510805|gb|ABQ77665.1| flagellar motor switch protein FliM [Pseudomonas putida F1]
gi|313497806|gb|ADR59172.1| FliM [Pseudomonas putida BIRD-1]
Length = 322
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E +E V ++ ++ + +P +
Sbjct: 169 QAIMPV--SFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L ANG + LG N ++I D I
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321
>gi|213053037|ref|ZP_03345915.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 320
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 10/301 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ LK G V+P I +G + + + G V Y +R+
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVE 318
Query: 302 D 302
Sbjct: 319 H 319
>gi|327193028|gb|EGE59940.1| flagellar C-ring motor switch protein [Rhizobium etli CNPAF512]
Length = 314
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 103/305 (33%), Positives = 168/305 (55%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +
Sbjct: 10 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 69
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H++ N A+L +WS N + C N VITL+E+LLGA+ ETI + +R LS +E
Sbjct: 70 HLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATAETIEEPADRLLSIIE 129
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +I+ VL ++ P+L + D + +EF INM++T+
Sbjct: 130 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPPEDKPDEFAAAINMSLTLA 189
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+
Sbjct: 190 GIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWSEQLGDQVRRSHVTLEARIRLQDL 249
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 250 TLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 309
Query: 312 KNFLH 316
++ ++
Sbjct: 310 RHLMN 314
>gi|301029402|ref|ZP_07192496.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1]
gi|299877706|gb|EFI85917.1| flagellar motor switch protein FliM [Escherichia coli MS 196-1]
Length = 334
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKQLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I +G + + + G + Y +RI
Sbjct: 263 ANFADISLRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|167034915|ref|YP_001670146.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
gi|166861403|gb|ABY99810.1| flagellar motor switch protein FliM [Pseudomonas putida GB-1]
Length = 322
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 39/277 (14%), Positives = 88/277 (31%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E +E V ++ ++ + +P +
Sbjct: 169 QAIMPVT--FEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMTATVARRQLKLRDILHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L ANG + LG N ++I D I
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGNLALQIIDPIER 321
>gi|323491452|ref|ZP_08096636.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
gi|323314321|gb|EGA67401.1| flagellar motor switch protein FliM [Vibrio brasiliensis LMG 20546]
Length = 349
Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats.
Identities = 34/303 (11%), Positives = 92/303 (30%), Gaps = 11/303 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ R+ + + + + + ++S Q
Sbjct: 31 DASAVDFDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQ 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF ++ + I LV L+EN G ++ R
Sbjct: 85 MMKFGEYQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHARIEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + + + S E E + +
Sbjct: 145 FTPTERRIVQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ ++ F +++P + + + Q+ + + VN
Sbjct: 203 HIEVDGGGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVD 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +L+D++ L+ G +IP A++ + ++GR G+N ++++++I
Sbjct: 263 LLEQDISLRDLMELQPGDIIPVTMP--EHAVMFVEELPTFRVKMGRSGENLAVQVSEKIK 320
Query: 306 FDQ 308
Sbjct: 321 RPD 323
>gi|52080234|ref|YP_079025.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
14580]
gi|52785611|ref|YP_091440.1| flagellar motor switch protein FliM [Bacillus licheniformis ATCC
14580]
gi|319645987|ref|ZP_08000217.1| FliM protein [Bacillus sp. BT1B_CT2]
gi|52003445|gb|AAU23387.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348113|gb|AAU40747.1| FliM [Bacillus licheniformis ATCC 14580]
gi|317391737|gb|EFV72534.1| FliM protein [Bacillus sp. BT1B_CT2]
Length = 332
Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats.
Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ + IS +S + I S + +
Sbjct: 49 SKDQIRSLTRIHDNFARLLTTYFSAQLRTYIQISVSSVDQVPYEEFIRSIPNMTILNLFE 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + T+++ ++G + ++ + ++ +E K+
Sbjct: 109 VRPLEGRIMMEINPTIAYTMMDRVMGGIGSSHNKIDS--MTEIETKIMSNLFESCLTNYK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P + DF + NE V I++N I +++ L IP L
Sbjct: 167 DAWESITEIEPEMSDFEV--NPQFVQMVSPNETVVVISLNTQIGDISGVINLCIPHVVLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + ++ + I + + T+++ + L+IG
Sbjct: 225 PIIPKLSVHYWMQSDRIEPKPEETKSIEKRILTAQIPIVAELGSSELTIEEFLNLEIGDC 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + K + + GR+ + I+I D ++
Sbjct: 285 ITLDKSVAEPLTVLVGDKPKFLAQAGRMNRKTAIQILDHDIRGEE 329
>gi|332799187|ref|YP_004460686.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
gi|332696922|gb|AEE91379.1| flagellar motor switch protein FliM [Tepidanaerobacter sp. Re1]
Length = 331
Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats.
Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 13/313 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + + K P + K S + + + L ++ V I
Sbjct: 27 IKSKELDKKVKPYDFKRPNKF------SKEQLHTLSMIHENFARLLTTYLSAQLRTVVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + ++ I S + + S + + ++ ++++ LLG E
Sbjct: 81 NVFFVEQMTYNEFIFSIPNPSLIAVVDFSPLKGAAIMEINPSIAFSIIDRLLGGPGEYSG 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+L R + +E + ++ ++++ +L+ + LE + NE
Sbjct: 141 KL--REPTEIETGIIEKVFSKMTRILSDAWKDIADIQTTLEKLET--NSQFVQLVSPNEA 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I N + N + IP L + Q+E K Y
Sbjct: 197 VALITFNAKVGNSEGMINICIPHIVLEPIIPKLSTRIWLSTSKQEQAETTKQFITEKVYD 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
I + T+ + + L G VI K A + K +S +G
Sbjct: 257 TKTEIRAELGRTLITVGEFINLATGDVIALNKNIKDGADIFIKDKLKFSGSIGVHRNKMA 316
Query: 298 IRITDRINFDQKS 310
I+I + +
Sbjct: 317 IKIQKKFGEGGEF 329
>gi|304398862|ref|ZP_07380732.1| flagellar motor switch protein FliM [Pantoea sp. aB]
gi|304353566|gb|EFM17943.1| flagellar motor switch protein FliM [Pantoea sp. aB]
Length = 335
Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 10/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ + P P R+ + + + + + + DIS
Sbjct: 27 KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMALFNLLRRSPDIS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + L + S +LV ++NL G +
Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ +R + + + N N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
+ I N+ F + IP + + ++ + S + D ++ +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L ++ LK G V+P I + + + + G + Y +R+
Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKP--ERIIAHVDSVPVLTSQYGTMNGQYALRV 317
Query: 301 TDRINF 306
IN
Sbjct: 318 EHLINP 323
>gi|308187297|ref|YP_003931428.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1]
gi|308057807|gb|ADO09979.1| Flagellar motor switch protein fliM [Pantoea vagans C9-1]
Length = 335
Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 90/306 (29%), Gaps = 10/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ + P P R+ + + + + + + DIS
Sbjct: 27 KQNGPEGDIRPYDPNTQRRVV------RERLQALEIINERFARSFRMTLFNLLRRSPDIS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + L + S +LV ++NL G +
Sbjct: 81 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 140
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ +R + + + N N+ V
Sbjct: 141 VEGREFTHTEQRVIRRMLKLALDGYSDAWKAIYPLDVEYVRSE-MQVKFTNITTSPNDIV 199
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
+ I N+ F + IP + + ++ + S + D ++ +
Sbjct: 200 VNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHWRDNLVKQVQHSEL 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L ++ LK G V+P I + + + + G + Y +R+
Sbjct: 260 ELIAHFAETSLRLSRILQLKPGDVLPIEKP--ERIIAHVDSVPVLTSQYGTMNGQYALRV 317
Query: 301 TDRINF 306
IN
Sbjct: 318 EHLINP 323
>gi|297584047|ref|YP_003699827.1| flagellar motor switch protein FliM [Bacillus selenitireducens
MLS10]
gi|297142504|gb|ADH99261.1| flagellar motor switch protein FliM [Bacillus selenitireducens
MLS10]
Length = 333
Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 108/311 (34%), Gaps = 13/311 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + + + L ++ V I
Sbjct: 27 LKKEETQKKIKTYDFKRALRF------SKDQIRSLTRIHENFARLLTTQLSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + I S + + + F + + N+ +L+ +LG E
Sbjct: 81 SVASVDQLPYDEFIRSVPKQTILNVFEPYPLDGRFVLEVNPNIAYAMLDRMLGGQGEAYN 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ N L+ +E K+ + + + + +E P ++D + NE
Sbjct: 141 KVDN--LTEIEAKIMTQLFQRTLETFREAWLSVEEIDPMMDDLEV--NPQFLQLVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I+ + TI + + +P + Q K + + I+ +
Sbjct: 197 VVVISFSTTIGESSGMINICLPHVVIEPLLPKLSVHLWMQTKKKERKPGEIEALELNIKR 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+++ ++ + T+++ V L +G I ++ G Y + G+V ++
Sbjct: 257 APLDVAVQLGQSEITIEEFVHLAVGDTIELNQSIDELLRMTVGGSPKYKVQPGKVKEHLA 316
Query: 298 IRITDRINFDQ 308
++I + I ++
Sbjct: 317 VQIVEDIEEEE 327
>gi|269961627|ref|ZP_06175989.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
gi|269833668|gb|EEZ87765.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
Length = 348
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 36/295 (12%), Positives = 85/295 (28%), Gaps = 11/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + I LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + VN + K
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+D++ L+ G VIP A + Y ++GR ++I++ I
Sbjct: 269 SLRDLMELQPGDVIPIEMP--EHATMFIEDLPTYRVKMGRSEDKMAVQISEEIER 321
>gi|117919797|ref|YP_868989.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
gi|117612129|gb|ABK47583.1| flagellar motor switch protein FliM [Shewanella sp. ANA-3]
Length = 343
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + + L M ++S Q
Sbjct: 32 EARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + I LV L++N G ++ R +
Sbjct: 86 KFGEYVHTLFVPTSLNMVRFHPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 145
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + E V + ++
Sbjct: 146 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVINSFHI 203
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ ++ + + V D +
Sbjct: 204 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDKQDTDMRWSQALHDEIMDVKVGFDASVV 263
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TLKDV+ K G +IP ++ Y C++GR N ++I ++I
Sbjct: 264 EHELTLKDVMNFKAGDIIPIELP--EYIMMKIEDLPTYRCKMGRSRDNLALKIYEKIPRP 321
Query: 308 Q 308
+
Sbjct: 322 E 322
>gi|212634374|ref|YP_002310899.1| flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
gi|212555858|gb|ACJ28312.1| Flagellar motor switch protein FliM [Shewanella piezotolerans WP3]
Length = 342
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M ++S Q
Sbjct: 31 DARAYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 84
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + S I LV L++N G ++ R +
Sbjct: 85 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + + E V + ++
Sbjct: 145 PTERRIVQLLLKIIFEDYKEAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ +++ + ++V ID +
Sbjct: 203 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALRDEIMDVDVGIDATVV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TL+DV+ K G VIP IL Y C++G+ +N ++I ++I
Sbjct: 263 EHQVTLRDVLEFKAGDVIPVELP--EHIILKVEDLPTYRCKMGKTKENLALKICEQIQRP 320
Query: 308 Q 308
+
Sbjct: 321 E 321
>gi|322833203|ref|YP_004213230.1| flagellar motor switch protein FliM [Rahnella sp. Y9602]
gi|321168404|gb|ADW74103.1| flagellar motor switch protein FliM [Rahnella sp. Y9602]
Length = 340
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 10/308 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P P R+ + + + + + + DI+ + +
Sbjct: 37 DDGVKPFDPTTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIK 90
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + +LV ++NL G ++ R
Sbjct: 91 IQPYHDFARNLPVPTNLNLIHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 150
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ KR + S + S + N N+ V T
Sbjct: 151 FTHTEQRVIKRMLRLALDAYEDAWSGVYKLSVEYVRAE-LQIKFTNITSSPNDIVVTTPF 209
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ I ++ F + IP + + + S N+ + + Q + +
Sbjct: 210 HVEIGALSGDFNICIPFSMIEPLRELLTNPPVENSRNEESQWRENLVHQVQQSELELVAN 269
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L ++ LK G V+P I +G + + + G + + Y +R+ IN
Sbjct: 270 FVEIPLRLSQILKLKPGDVLPIEKP--DRLIAHVDGVPVLTSQYGTLNEQYALRVEHLIN 327
Query: 306 FDQKSLKN 313
SL
Sbjct: 328 PILNSLDE 335
>gi|311030119|ref|ZP_07708209.1| flagellar motor switch protein FliM [Bacillus sp. m3-13]
Length = 332
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 111/312 (35%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ ++ K R K + + + + + L F ++ + I
Sbjct: 28 LKKENQEKKVKVYDFKRALRF------SKDQIRNLTRIHENFARLLTTYFSAQLRTYIQI 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + I S + + + ++ + + + +L+ LG +
Sbjct: 82 SVASVDQLPYEEFIRSIPKMTILNVFEVAPLEGRVVLEINPTIAYAMLDRQLGGKGTGVN 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ + L+ +E KL + T + P L D + NE
Sbjct: 142 KVDS--LTEIETKLMTTLFEGAIENFGEAWDTIADIQPFLSDLEV--NPQFLQLVSPNET 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I+MN+TI V + IP L + K++ + + I +
Sbjct: 198 VIVISMNITIGEVTGMINICIPHVVLEPVIPKLSAHYWMEEKNKVRQDHEIATLEKAIRA 257
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + T + + + D++ + IG V+P + I+ + K + ++G+V KN
Sbjct: 258 TALTVTTELGHSEISFSDLLNITIGDVLPLQQKIDEPIIVKVDNKPSFYGQVGQVKKNMA 317
Query: 298 IRITDRINFDQK 309
++I ++I +
Sbjct: 318 VQILEKIKEGYE 329
>gi|15642125|ref|NP_231757.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586821|ref|ZP_01676603.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
gi|121727171|ref|ZP_01680338.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
gi|147675314|ref|YP_001217648.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
gi|153213269|ref|ZP_01948681.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
gi|153803040|ref|ZP_01957626.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
gi|153818973|ref|ZP_01971640.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
gi|153822893|ref|ZP_01975560.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
gi|153825557|ref|ZP_01978224.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
gi|153828607|ref|ZP_01981274.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
gi|227082251|ref|YP_002810802.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
gi|229507789|ref|ZP_04397294.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
gi|229511974|ref|ZP_04401453.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
gi|229513777|ref|ZP_04403239.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
gi|229519110|ref|ZP_04408553.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
gi|229528862|ref|ZP_04418252.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
gi|229607334|ref|YP_002877982.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
gi|254226360|ref|ZP_04919949.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
gi|254291362|ref|ZP_04962155.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
gi|254849211|ref|ZP_05238561.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
gi|255745135|ref|ZP_05419084.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
gi|262153475|ref|ZP_06028605.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
gi|262167485|ref|ZP_06035191.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
gi|262191375|ref|ZP_06049565.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
gi|298497852|ref|ZP_07007659.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
gi|9656676|gb|AAF95271.1| flagellar motor switch protein FliM [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548988|gb|EAX59027.1| flagellar motor switch protein FliM [Vibrio cholerae 2740-80]
gi|121630416|gb|EAX62809.1| flagellar motor switch protein FliM [Vibrio cholerae V52]
gi|124116069|gb|EAY34889.1| flagellar motor switch protein FliM [Vibrio cholerae 1587]
gi|124121438|gb|EAY40181.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-3]
gi|125621110|gb|EAZ49455.1| flagellar motor switch protein FliM [Vibrio cholerae V51]
gi|126510468|gb|EAZ73062.1| flagellar motor switch protein FliM [Vibrio cholerae NCTC 8457]
gi|126519589|gb|EAZ76812.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
gi|146317197|gb|ABQ21736.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
gi|148875878|gb|EDL74013.1| flagellar motor switch protein FliM [Vibrio cholerae 623-39]
gi|149740708|gb|EDM54807.1| flagellar motor switch protein FliM [Vibrio cholerae MZO-2]
gi|150422692|gb|EDN14646.1| flagellar motor switch protein FliM [Vibrio cholerae AM-19226]
gi|227010139|gb|ACP06351.1| flagellar motor switch protein FliM [Vibrio cholerae M66-2]
gi|227014022|gb|ACP10232.1| flagellar motor switch protein FliM [Vibrio cholerae O395]
gi|229332636|gb|EEN98122.1| flagellar motor switch protein FliM [Vibrio cholerae 12129(1)]
gi|229343799|gb|EEO08774.1| flagellar motor switch protein FliM [Vibrio cholerae RC9]
gi|229348958|gb|EEO13915.1| flagellar motor switch protein FliM [Vibrio cholerae TMA 21]
gi|229351939|gb|EEO16880.1| flagellar motor switch protein FliM [Vibrio cholerae B33]
gi|229355294|gb|EEO20215.1| flagellar motor switch protein FliM [Vibrio cholerae BX 330286]
gi|229369989|gb|ACQ60412.1| flagellar motor switch protein FliM [Vibrio cholerae MJ-1236]
gi|254844916|gb|EET23330.1| flagellar motor switch protein FliM [Vibrio cholerae MO10]
gi|255736965|gb|EET92361.1| flagellar motor switch protein FliM [Vibrio cholera CIRS 101]
gi|262024057|gb|EEY42752.1| flagellar motor switch protein FliM [Vibrio cholerae RC27]
gi|262030712|gb|EEY49346.1| flagellar motor switch protein FliM [Vibrio cholerae INDRE 91/1]
gi|262032750|gb|EEY51298.1| flagellar motor switch protein FliM [Vibrio cholerae CT 5369-93]
gi|297542185|gb|EFH78235.1| flagellar motor switch protein FliM [Vibrio cholerae MAK 757]
gi|327484654|gb|AEA79061.1| Flagellar motor switch protein FliM [Vibrio cholerae LMA3894-4]
Length = 349
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ + R+ + + + L + ++S Q
Sbjct: 32 PSATNFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 85
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF ++ + + LV L+EN G ++ R
Sbjct: 86 MKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + + A + S E E + + +
Sbjct: 146 TPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 203
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ F +++P + + + Q+ + + VN +
Sbjct: 204 VEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNL 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 264 LEMDIALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKR 321
Query: 307 DQ 308
Sbjct: 322 PD 323
>gi|15615009|ref|NP_243312.1| flagellar motor switch protein FliM [Bacillus halodurans C-125]
gi|10175066|dbj|BAB06165.1| flagellar motor switch protein [Bacillus halodurans C-125]
Length = 330
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 50/285 (17%), Positives = 104/285 (36%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + + + L F ++ V IS S + I S + + +
Sbjct: 48 SKDQIRSISRIHENFARLLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFE 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ F I + N+ +L+ LLG ++ ++ N L+ +E ++ + +
Sbjct: 108 PAPLDGRFLIEVNPNVAYAMLDRLLGGQGVSVNKVDN--LTEIETRIMSQLFQRTLDSFQ 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ ST E P ++ + NE V I+++ TI + + +P L
Sbjct: 166 EAWSTVIELEPEMDAVEV--NPQFLQMVSPNETVVVISLSTTIAETSGMINICLPHVVLE 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ Q K + + +D + Q + I T + + T+ + + L IG V
Sbjct: 224 EVLPKLSVHYWMQEKKKQRQPGELDSIEHRVRQAPLLIQTELGRSEITIHEFLHLGIGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + G Y + G+ + +++TD I +
Sbjct: 284 IELDQSIHEPLNVRVGGHLKYLAQPGKKKNHLAVQVTDVIEEAAE 328
>gi|310767337|gb|ADP12287.1| flagellar motor switch protein [Erwinia sp. Ejp617]
Length = 336
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + ++ + N N+ V T
Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + IP + ++ S + E+ D ++ + +
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVAN 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ LK G V+P I +G + + + G + K Y +R+ IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323
Query: 306 F 306
Sbjct: 324 P 324
>gi|170722847|ref|YP_001750535.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
gi|169760850|gb|ACA74166.1| flagellar motor switch protein FliM [Pseudomonas putida W619]
Length = 322
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 40/277 (14%), Positives = 89/277 (32%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTSLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFIDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E +E V ++ ++ + +P +
Sbjct: 169 QAIMPVN--FEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E + ++V + + ++ L+DV+ ++ G VIP
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVSVPLSATVARRQLKLRDVLHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L ANG + LG N ++I D I
Sbjct: 287 P--EHLVLRANGVPSFKARLGSHKGNLALQIIDPIER 321
>gi|91223552|ref|ZP_01258817.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
gi|269965696|ref|ZP_06179809.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91191638|gb|EAS77902.1| flagellar motor switch protein M [Vibrio alginolyticus 12G01]
gi|269829764|gb|EEZ84000.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 348
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 11/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + I LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + VN + K
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+D++ L+ G +IP A + Y ++GR ++I++ I
Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYRVKMGRSEDKLAVQISEEIER 321
>gi|42524697|ref|NP_970077.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
HD100]
gi|39576907|emb|CAE78136.1| flagellar motor switch protein FliM [Bdellovibrio bacteriovorus
HD100]
Length = 333
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 33/306 (10%), Positives = 95/306 (31%), Gaps = 10/306 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G+ + R+ + + + + I+
Sbjct: 36 GKVDERKIVSYDLTSQDRIIRG------RLPQLEVIYEKFMRAFRVSLSSALRKIASITL 89
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
TS + KF I++ S + + + L L+++ G + ++
Sbjct: 90 TSTEFLKFGEFINTLPMPTCMSVLRFGNLRGSALFVIESKLAYALVDSFFGGADRPYTKI 149
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
+ + +E + ++ + + ++ ++ + + + V
Sbjct: 150 DGKDFTPIELSIVQKVVGLAINDMEMAWASIEKIGCSFVR--TEVNPQFVGIVPPTDVVI 207
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSED-LIDPFARKTYQLNV 240
++ +EN + ++IP T+ Q +++ + + + ++
Sbjct: 208 ASTFDVELENATGTISIVIPYATIEPIKQKLQTGFQVETDQTDKKLWTAIIQEQLLETDM 267
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + + LKD++ LK+G VIP ++ G + G +++
Sbjct: 268 EIKVNLGETEIKLKDLMNLKVGDVIPLDQDASGEFDVAVEGVRKFKGYYGIHHGTVAVQV 327
Query: 301 TDRINF 306
T +
Sbjct: 328 TRPVEK 333
>gi|288553053|ref|YP_003424988.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
gi|288544213|gb|ADC48096.1| flagellar motor switch protein FliM [Bacillus pseudofirmus OF4]
Length = 330
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 104/285 (36%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + L F ++ V IS S + I S + + +
Sbjct: 48 SKDQVRSLTRIHENFARLLTTYFSAQLRTFVQISVASVDQLPYEEFIRSIPKMTILNVFE 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + N+ +L+ LLG +I ++ N L+ +E ++ + +
Sbjct: 108 PYPLEGRLLMEVNPNVAYAMLDRLLGGKGISINKIEN--LTEIETRIMSQLFQRTLDSFE 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S+ E P +E+ + NE V I+++ TI + + +P L
Sbjct: 166 EAWSSVVEMDPVMEEIEV--NPQFLQMVSPNETVVVISLSTTIAETSGMINICLPHVVLE 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ Q K + + K + + I + + + T+ + + L G V
Sbjct: 224 EVLPKLSVHYWMQEKKKQHQPGEKEAIEAKIKKAPLLIQSELGRSEITINEFLQLGEGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I +++ G++ + + G++ +++TD I +
Sbjct: 284 IELDQLINEPLLVTVEGEKKFYAQPGKMKNKMAVQVTDVIEEAED 328
>gi|304438436|ref|ZP_07398376.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304368519|gb|EFM22204.1| flagellar motor switch protein FliM [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 333
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 45/286 (15%), Positives = 94/286 (32%), Gaps = 8/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + + L + +DI S + + + S V +
Sbjct: 49 SKDQMRTLFMLHESFSRLLNTYLSASLRTMIDIEVLSVEQMTYQEFVQSMANPSVIGILA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L N I S ++ + ++ + G + R L+ +E + +R I ++
Sbjct: 109 LPPLKGNIIIELSTDISLAYIDRIFGGEGRPGVKP--RVLTDIEAAVMRRFIDTVTNYFR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E PN E + ++ V I +++ + V + IP L
Sbjct: 167 EAWSNVVEFRPNFETMET--NPQFAQIVPPSDMVVLITIHIKMGEVEGMMNICIPYLVLE 224
Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S + S + + RK + +V ++ T+ + +TL G
Sbjct: 225 PVMSKLTTSFWVASSMDRESSPEQVAELQRKIERTSVPFTVQLGEIHVTINEFLTLGFGD 284
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V+ K + + G GK ++I+ I +
Sbjct: 285 VLQLDTLTKDELVCYVGSNPKFLARPGTAGKRMAVQISGIIEGEDD 330
>gi|251797432|ref|YP_003012163.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
gi|247545058|gb|ACT02077.1| flagellar motor switch protein FliM [Paenibacillus sp. JDR-2]
Length = 333
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 104/312 (33%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + + + R K + + + + ++L F ++ V I
Sbjct: 27 LKKEEVTRKVRVYDFKRATRF------SKDHIRSLTRIHENFARYLTTYFSAQLRTFVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I S + + + + N+ +L+ +LG
Sbjct: 81 NVVQVEQLPYDEFIRSIPKMTILNIFEAEPLEGRMVLEVHPNVAYAMLDRMLGGQGMAPS 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ N L+ +E + +R A+ L + T + SP LE + NE
Sbjct: 141 KINN--LTEIETIIMERIFARAFESLQEAWKTVIDISPRLEALET--NPQFMQIVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ I+++ I + L IP + ++ + + + ++ ++ +
Sbjct: 197 IALISLSTKIGDTTGMINLCIPHVVIEPIMPRLSAHHWFVSQKKERIPEEVEMLEQRVSK 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + T+K+ + L +G VI + K + G V
Sbjct: 257 AKLPIVAELGESVITIKEFLGLAVGDVISLNKPIDDGLRIKVGEKLKFIGSPGSVKDRIA 316
Query: 298 IRITDRINFDQK 309
+++ ++ +
Sbjct: 317 VQVDLVVSEGAE 328
>gi|254228441|ref|ZP_04921867.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
gi|262393595|ref|YP_003285449.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
gi|151939029|gb|EDN57861.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
gi|262337189|gb|ACY50984.1| flagellar motor switch protein FliM [Vibrio sp. Ex25]
Length = 348
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 85/295 (28%), Gaps = 11/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + I LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + VN + K
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+D++ L+ G +IP A + Y ++GR ++I++ I
Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFVEDLPTYRVKMGRSEDKLAVQISEEIER 321
>gi|157376191|ref|YP_001474791.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
gi|157318565|gb|ABV37663.1| flagellar motor switch protein FliM [Shewanella sediminis HAW-EB3]
Length = 341
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 11/301 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + + L M ++S Q
Sbjct: 30 DARSYDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQML 83
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + S I LV L++N G ++ R +
Sbjct: 84 KFGEYVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFT 143
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E+++ + + I + + + E V + ++
Sbjct: 144 PTERRIVQLLLKIIFEDYKDAWAPVMDVE--FDYLDSEVNPAMANIVSPTEVVVVSSFHI 201
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ F + +P + + + Q+ +++ + ++V ID I
Sbjct: 202 EVDGGGGDFHITMPYSMIEPIRELLDAGVQSDTQDTDMRWSQALKDEIMDVDVGIDATIV 261
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ TLKDV+ K G VI ++ Y C+LG N +RI + I
Sbjct: 262 EHQVTLKDVMEFKQGDVITVELP--EHIVMRVEDLPTYRCKLGTARDNLALRICETIPRP 319
Query: 308 Q 308
+
Sbjct: 320 E 320
>gi|292487985|ref|YP_003530862.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
gi|292899205|ref|YP_003538574.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291199053|emb|CBJ46164.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291553409|emb|CBA20454.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
Length = 336
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + ++ + N N+ V T
Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + IP + ++ ++ + E+ D ++ + +
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLTEDENWRDTLVKQVQHSELELVAN 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ LK G V+P I +G + + + G + K Y +R+ IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323
Query: 306 F 306
Sbjct: 324 P 324
>gi|326389471|ref|ZP_08211038.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
JW 200]
gi|325994476|gb|EGD52901.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
JW 200]
Length = 332
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 98/284 (34%), Gaps = 6/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L + V+++ S + +S +
Sbjct: 50 SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ F + +NN +L+ +LG + +L +R + +E L + + QI +
Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + +P+L + NE V +++ I +P TL
Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGIMNFCMPHLTLE 225
Query: 208 KTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + + + K + + + ++ T+K+ + L+IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLELEIGDII 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K + + K + G Y++RIT+ I +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329
>gi|302670733|ref|YP_003830693.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
B316]
gi|302395206|gb|ADL34111.1| flagellar motor switch protein FliM [Butyrivibrio proteoclasticus
B316]
Length = 327
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 39/310 (12%), Positives = 100/310 (32%), Gaps = 13/310 (4%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
+ K A+ K + + Y + L + +V +S
Sbjct: 28 QAADEKKVKDYDFKRPAKF------SKEHLRTLEMIYEHYGRLLSTTLPLYLRKNVQVSV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ ++ +S ++ + + + N+ + ++ +LG T+ +
Sbjct: 82 ANSETVTYSEFSNALSNPVILGVINFLPLQGTIILELQANIGFSFIDRMLGGEGGTLDKP 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + +E L ++ + ++ + +P +E + + +
Sbjct: 142 --RPFTDIEMPLIEKLVTICMQLMVEPWQNVVAINPVMERIET--NPQFAQVISPTDMIA 197
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLN 239
+ +N+ I + + +P TL +N ED D +++
Sbjct: 198 IVTLNIKIGDTEGLMNVCLPYFTLESVMDKLNTKFWFSTMQKNADEDYEDTLESMVKRVD 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + ++ D V L+ G +I +R T + ++ G Y +R
Sbjct: 258 VPVKAILGKCNVSVSDFVHLQAGDIIRLDNRVNTDMQVYVGNIFKFTALPGTAKDKYAVR 317
Query: 300 ITDRINFDQK 309
IT + + +
Sbjct: 318 ITSVVREEDE 327
>gi|317153224|ref|YP_004121272.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
Aspo-2]
gi|316943475|gb|ADU62526.1| flagellar motor switch protein FliM [Desulfovibrio aespoeensis
Aspo-2]
Length = 325
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 45/303 (14%), Positives = 96/303 (31%), Gaps = 13/303 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + M VDI+ S
Sbjct: 32 DSGVVSFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALANTMRKRVDINPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S S + N + + LV L+EN G + ++ R
Sbjct: 86 MSKFGDFMRSLPVPTSISIFKMDPLRGNALLVVDSRLVFALVENFFGGAGSQP-KVEGRD 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + +R + A + + E L + ++ V +
Sbjct: 145 FTPIEQAIVERVVKIALANMEESWKPVHEVHVELVR--TEVNPQFAAIVPPSDVVIVVTF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +EN S ++ +P T+ S Q++ I+ F + + V + R
Sbjct: 203 EVELENAIGSLIVCLPYATMEPIRSKLHASFQSERLEVDHVWINRFKERLMETPVEMVIR 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + + ++ L+ G +I E G + GRV N + ++ I
Sbjct: 263 MGRTTISGRQLLYLQEGDIILLDTDEDELLEAEVEGVRKFQGLPGRVKGNKSFQV---IK 319
Query: 306 FDQ 308
++
Sbjct: 320 EEE 322
>gi|20807877|ref|NP_623048.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516441|gb|AAM24652.1| Flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
Length = 330
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 6/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + L + V+++ S + +S +
Sbjct: 48 SKEQLRTLQMIFENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIID 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
S F + +NN +L+ LLG + + +R + +E L + + QI +L
Sbjct: 108 ASPLEGPFLLELNNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLE 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + +P+L + NE V +++ I +P TL
Sbjct: 166 EPWSNIIDLTPSLMRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 223
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + + + K + + + ++ T+ D++ ++G VI
Sbjct: 224 PIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVI 283
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
R + + K + G K Y+++IT+ I +
Sbjct: 284 MLDKRYNEPVEVIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327
>gi|120554904|ref|YP_959255.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
gi|120324753|gb|ABM19068.1| flagellar motor switch protein FliM [Marinobacter aquaeolei VT8]
Length = 332
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ R+ + + ++ + + D+S
Sbjct: 27 ETDDTGVKNYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVSTG 80
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF IH+ + + LV L++N G ++
Sbjct: 81 GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + + Q+ + + + E +E V
Sbjct: 140 GREFTPTETRIVQMVLNQVFHDMKEAWHAVLQVE--FEYLSSEVNPAMANIVSPSEVVVV 197
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ ++ +P + + + Q+ ++ E ++ ++NV I
Sbjct: 198 STFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNALQEDIKEVNVPI 257
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+T + ++ +L+D+ +K G VIP ++ANG IY LG +RI D
Sbjct: 258 NTTVCRRRISLRDIARMKAGDVIPVEIP--EHLTVTANGIPIYKATLGTRDGKLALRIHD 315
Query: 303 R 303
R
Sbjct: 316 R 316
>gi|307264879|ref|ZP_07546441.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306920137|gb|EFN50349.1| flagellar motor switch protein FliM [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 332
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 41/284 (14%), Positives = 97/284 (34%), Gaps = 6/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L + V+++ S + +S +
Sbjct: 50 SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ F + +NN +L+ +LG + +L +R + +E L + + QI +
Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQILPLFK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + +P+L + NE V +++ I +P TL
Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + + + K + + + ++ T+K+ + +IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEDKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLEFEIGDII 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K + + K + G Y++RIT+ I +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329
>gi|260886644|ref|ZP_05897907.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
gi|330839524|ref|YP_004414104.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
gi|260863787|gb|EEX78287.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
gi|329747288|gb|AEC00645.1| flagellar motor switch protein FliM [Selenomonas sputigena ATCC
35185]
Length = 334
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 47/290 (16%), Positives = 102/290 (35%), Gaps = 8/290 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + L + + L + V++ S + + + S V +
Sbjct: 49 SKDQIRTLNMLYENFARLLNTHLSTHLRTMVNVEVVSVEQLTYQEFLQSLSNPSVIGVMA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L N + + + ++ + G E + R L+ +E+ + ++ IA+ S L
Sbjct: 109 LPPLKGNIIMEVNTGIAFAYIDRVFGGLGENTLKP--RILTEIEEAVMRKFIAKASEFLK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E +P LE ++ V + + + I V L IP L
Sbjct: 167 ESWSNVIEINPILEAIEA--NPGFVQIVPPSDMVIIVTVQVKIGEVEGFMTLCIPYLVLE 224
Query: 208 KTTLISLSS----QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S + +++ + D I +K ++ + + + T+++ +TL G
Sbjct: 225 PVMSKLSTSFWVAASVAKDNNPDKIRALEKKIHKSPIPLIVELGTIDMTIREFLTLGFGD 284
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
V+ + K + K + C G GK ++IT +
Sbjct: 285 VLQLDTKVKDELKILVGQKPKFLCRPGTQGKRSAVQITQVAFEGDEDTDE 334
>gi|270262388|ref|ZP_06190659.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13]
gi|270043072|gb|EFA16165.1| flagellar motor switch protein FliM [Serratia odorifera 4Rx13]
Length = 333
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 90/303 (29%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S P P R+ + + + + + DI+
Sbjct: 29 SNESEVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L+ + +LV ++NL G ++
Sbjct: 83 IRIQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ KR + S + + + N N+ V T
Sbjct: 143 REFTPTEQRVIKRMLRLALDAYGDAWSAIYKINVEYVRAE-MQVKFTNITTSPNDIVVTT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 202 PFQVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSQWRETLVKQVQHSELELI 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 262 ANFVDIPMRLSKILKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHL 319
Query: 304 INF 306
IN
Sbjct: 320 INP 322
>gi|258621111|ref|ZP_05716145.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|262170887|ref|ZP_06038565.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
gi|258586499|gb|EEW11214.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|261891963|gb|EEY37949.1| flagellar motor switch protein FliM [Vibrio mimicus MB-451]
Length = 349
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + A + S E E + + ++ ++
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + + VN +
Sbjct: 209 GGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323
>gi|86356304|ref|YP_468196.1| flagellar C-ring protein [Rhizobium etli CFN 42]
gi|86280406|gb|ABC89469.1| flagellar C-ring protein [Rhizobium etli CFN 42]
Length = 316
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 105/305 (34%), Positives = 166/305 (54%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI S+ G +Y +FLP I K + LDV +SY C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDRGRVAKICSAFGDVYGEFLPDIIKSETGLDVTVSYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H++ N A+L +WS N + C N VITL+E+LLGA+ +TI + R LS +E
Sbjct: 72 HLVDDLSHNVTLVDATLRNWSQNVTLACGNGFVITLMEHLLGATADTIEEPAERLLSVIE 131
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +I+ VL ++ P+L + D + +EF INM++T+
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARPRPAEDKPDEFAAAINMSITLA 191
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ S F LIIPQ LLKT + + ++ S + + + + +V ++ +I L+
Sbjct: 192 GIVSEFSLIIPQTALLKTKVTPPKPKRQTGGNSPEWTEQLGDQVRRSHVTLEAKIRLQDL 251
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
TL+ + L G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMAGDVIPFHDSGDVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELI 311
Query: 312 KNFLH 316
++ ++
Sbjct: 312 RHLMN 316
>gi|104782811|ref|YP_609309.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
gi|95111798|emb|CAK16522.1| flagellar motor switch protein FliM [Pseudomonas entomophila L48]
Length = 322
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQCFVDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E +E V ++ ++ + +P +
Sbjct: 169 QAIMPVN--FEYINSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E + + V + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDVLDVAVPMSATVARRQLKLRDILHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L ANG + LG ++I D I
Sbjct: 287 P--EHLVLRANGVPAFKARLGSHKGTLALQIIDPIER 321
>gi|254780687|ref|YP_003065100.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040364|gb|ACT57160.1| flagellar C-ring protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 318
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI
Sbjct: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP
Sbjct: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF
Sbjct: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV
Sbjct: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI
Sbjct: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
Query: 301 TDRINFDQKSLKNFLHKR 318
TDRINFDQKSLKNFLHKR
Sbjct: 301 TDRINFDQKSLKNFLHKR 318
>gi|229524128|ref|ZP_04413533.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
VL426]
gi|297582024|ref|ZP_06943943.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
gi|229337709|gb|EEO02726.1| flagellar motor switch protein FliM [Vibrio cholerae bv. albensis
VL426]
gi|297533719|gb|EFH72561.1| flagellar motor switch protein FliM [Vibrio cholerae RC385]
Length = 349
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + A + S E E + + ++ ++
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + + VN +
Sbjct: 209 GGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFIEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323
>gi|293395596|ref|ZP_06639879.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582]
gi|291421915|gb|EFE95161.1| flagellar motor switch protein FliM [Serratia odorifera DSM 4582]
Length = 334
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 89/301 (29%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 31 DSDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGPIR 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L+ + +LV ++NL G ++ R
Sbjct: 85 IQPYHEFARNLPVPTNLNLVHLNPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ KR + S + + N N+ V T
Sbjct: 145 FTPTEQRVIKRMLRLALDAYGDAWSAIYQIDVEYVRAE-MQVKFTNITTSPNDIVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTR 245
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 204 QVEIGALSGEFNICIPFAMIEPLRELLTNPPLENSRQEDSRWRETLVKQVQHSELELIAN 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L V+ L+ G V+P I +G + + + G + Y +R+ IN
Sbjct: 264 FVDIPMRLSKVLKLQPGDVLPIDKP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHLIN 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|258626185|ref|ZP_05721033.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|258581540|gb|EEW06441.1| flagellar motor switch protein [Vibrio mimicus VM603]
Length = 349
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + A + S E E + + ++ ++
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + + VN +
Sbjct: 209 GGGDFHMVMPYSMMEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323
>gi|89094448|ref|ZP_01167388.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
gi|89081340|gb|EAR60572.1| flagellar motor switch protein [Oceanospirillum sp. MED92]
Length = 325
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 12/303 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ R+ + + ++ + D++ Q
Sbjct: 34 EGDVRTYDLASHERIVRG------RMPTLEMVNERFARYTRISLFNLLRRAADVTVGGVQ 87
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
K+ IH+ + ++ LV L++N G ++ R
Sbjct: 88 VMKYGDYIHTLYVPTSMNLIRVNPLRGTALFIMDAKLVFKLVDNFFGGDGR-HAKIEGRE 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E +L + + Q L + + +E + + E V
Sbjct: 147 FTPTETRLIHKALEQFFLDLEEAWNPVKEL--SFDHLGHEMNPAMANVINPTEVVVVSTF 204
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +E + F + +P L + Q+ + + E R + ++
Sbjct: 205 QVDLEGGSGEFHVAMPYSMLEPIRDLLVSGFQSGEDEKDERWQVALQRDILMAGLPLEMT 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ TL+DVV L+ G +IP L AN +Y+C +G N +++ ++I
Sbjct: 265 LAQQEMTLRDVVDLQAGDIIPIELP--ETFELKANKVPVYNCTMGVSRGNLAVKVVNQIE 322
Query: 306 FDQ 308
+
Sbjct: 323 RPK 325
>gi|190890355|ref|YP_001976897.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
gi|190695634|gb|ACE89719.1| flagellar C-ring motor switch protein [Rhizobium etli CIAT 652]
Length = 316
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 102/305 (33%), Positives = 167/305 (54%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H++ N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E
Sbjct: 72 HLVDDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +I+ VL ++ P+L + D + +EF INM++T+
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHDARARPPEDKPDEFAAAINMSLTLA 191
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ S F LI+PQ LLKT + + ++ S + + + + +V ++ RI L+
Sbjct: 192 GIVSEFSLIVPQTALLKTKVTPPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQDL 251
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311
Query: 312 KNFLH 316
++ ++
Sbjct: 312 RHLMN 316
>gi|300871253|ref|YP_003786126.1| flagellar motor switch protein FliM [Brachyspira pilosicoli
95/1000]
gi|300688954|gb|ADK31625.1| flagellar motor switch protein, FliM [Brachyspira pilosicoli
95/1000]
Length = 343
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 44/319 (13%), Positives = 102/319 (31%), Gaps = 13/319 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ H+ + K + + + + ++ V I
Sbjct: 32 EVEHRKIKIYDFKRPDKF------SKDQIRTLQMMHENFARVTTTSLSAQLRTLVGIHVA 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + I S + S+ + + ++ T+++ L G + E+ +
Sbjct: 86 SVDQLTYEEFIRSVSNPSTLAIVSMDPLKGSSILEIDPSITFTIIDRLFGGAGESP-KNL 144
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
NR L+ +E + + I +I L + S + P L + N+ V
Sbjct: 145 NRELTDIELSVMEGIIVRILGNLREAWSQVIDLRPRLGSIET--NPQFAQMVSPNDMVVL 202
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240
I + + +V IP T+ + + + + K + V
Sbjct: 203 ITLETKVADVEGMMNFCIPYITIEPILSKFSAQYWYASVRRGSTSENLKIIKEKLQNIYV 262
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + L D++ L+ G V+ F + I ++ + C G G ++
Sbjct: 263 ETSAELGSMQLPLSDILNLQKGDVVKFTETKITDPVIFKIGTRKKFLCRPGISGSRMAVQ 322
Query: 300 ITDRINFDQKSLKNFLHKR 318
+T ++ + ++ L K
Sbjct: 323 LTGVMDGETDITEDDLLKE 341
>gi|209547920|ref|YP_002279837.1| hypothetical protein Rleg2_0312 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533676|gb|ACI53611.1| surface presentation of antigens (SPOA) protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 316
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 101/305 (33%), Positives = 167/305 (54%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGDK + KI SS G +Y +F P + K + L+V ++Y C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDKGRVAKICSSFGEIYSEFFPDVIKSETGLEVTVNYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H+I N +L +WS N I C N VITL+E+LLGA+ +TI + +R LS +E
Sbjct: 72 HLIDDLSSNVTLVDVTLRNWSQNITIACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +I+ VL ++ P+L + ++ + +EF INM++T+
Sbjct: 132 MDLAVMVFDKIAKVLRSAVNAPGGFEPSLSVPHALEMRARPPEDRPDEFAAAINMSITLA 191
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ S F L++PQ LLKT + + ++ S + + + + +V ++ +I L+
Sbjct: 192 GIVSEFSLMVPQTALLKTKVTPPKPKRQAGGSSAEWTEQLGDQVRRSHVTLEAKIRLQDL 251
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311
Query: 312 KNFLH 316
++ ++
Sbjct: 312 RHLMN 316
>gi|332981445|ref|YP_004462886.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
BON]
gi|332699123|gb|AEE96064.1| flagellar motor switch protein FliM [Mahella australiensis 50-1
BON]
Length = 335
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 40/315 (12%), Positives = 101/315 (32%), Gaps = 16/315 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M + K + K + L + ++L + + +
Sbjct: 28 MEQTAEEKKIRVYDFRRPNKF------SKEQLRTLEILHENFCRYLSSYLAGFLRIYCQV 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ S + + ++S E V + + N+ +++ +LG S
Sbjct: 82 NIVSVEELTYYEFMNSLPEPVVLGIMDFQPMDGKIVVEIAPNISYAMIDRVLGGSGRAAE 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ + S +E L +R + QI +L + + +P LE + NE
Sbjct: 142 EMT--AFSEIELALIERILRQIGTLLQESWANVAAITPKLERIET--NAQFAQIIAPNET 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKT------TLISLSSQNKSENQSEDLIDPFARK 234
+ + + + +V + IP T+ + + + + E + ++
Sbjct: 198 AALVTLMLKVGDVEGMVNICIPHVTIEPISDELTTRFWFSNEKKEKAERDEVSFNTLRKR 257
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I + ++ D + L G +I + + + G
Sbjct: 258 IENVQIPIRAILGESTISIGDFMQLSPGDIIQLDESVDNHIKVMVGDITKFYGKPGLRHN 317
Query: 295 NYTIRITDRINFDQK 309
+ ++ITD I ++
Sbjct: 318 HMAVKITDVIYQEED 332
>gi|260767699|ref|ZP_05876634.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
gi|260617208|gb|EEX42392.1| flagellar motor switch protein FliM [Vibrio furnissii CIP 102972]
gi|315179469|gb|ADT86383.1| flagellar motor switch protein FliM [Vibrio furnissii NCTC 11218]
Length = 352
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 88/297 (29%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + E E + + ++ ++
Sbjct: 151 RVIQLLLKIVFGDYKDAWAPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + + VN + +
Sbjct: 209 GGGDFHIVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDVPVNFRVNLLEQDL 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L+D++ L++G +IP A + Y ++GR G+ ++++++I
Sbjct: 269 ALRDLMELQVGDIIPIKMP--EHATMFVEELPTYRVKMGRSGEKLAVQVSEKIRRPD 323
>gi|116250474|ref|YP_766312.1| flagella motor switch protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115255122|emb|CAK06196.1| putative flagella motor switch protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 316
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 104/305 (34%), Positives = 168/305 (55%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDRGRVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H+I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E
Sbjct: 72 HLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +I+ VL ++ P+L Y D + +EF INM++T+
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPYAHDMRARPQEDRPDEFAAAINMSITLA 191
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ S F LI+PQ LLKT + + ++ + S + + + + +V ++ +I L+
Sbjct: 192 GIVSEFSLIVPQTALLKTKVTPPKPKRQASSNSAEWTEQLGDQVRRSHVTLEAKIRLQDL 251
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311
Query: 312 KNFLH 316
++ ++
Sbjct: 312 RHLMN 316
>gi|37525864|ref|NP_929208.1| flagellar motor switch protein FliM [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785293|emb|CAE14234.1| Flagellar motor switch protein FliM [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 334
Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 36/313 (11%), Positives = 91/313 (29%), Gaps = 10/313 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
S P P R+ + + + + + + DI+
Sbjct: 26 NTSSGENEIRPYDPNTQRRVI------RERLQALEIINERFARHFRMGLFNMLRRSPDIT 79
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + L + +LV ++NL G +
Sbjct: 80 VGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFAPSLVYIAVDNLFGGDGRFPTK 139
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ R + S + + N N+ V
Sbjct: 140 VEGREFTHTEQRVINRMLRMALDSYRDAWSAIFKIEVEYIRSE-MQVKFTNITTSPNDIV 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNV 240
T + I ++ F + IP + + + + + + ++ +
Sbjct: 199 VTTPFQVEIGALSGEFNICIPFAMIEPLRERLTNPPLENARQEDSLWRESLVKQVQHSEL 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L ++ L+ G ++P I+ +G + + + G + Y +R+
Sbjct: 259 ELVANFADIPLRLSKILQLQPGDILPIDKP--ERLIVHVDGVPVLTSQYGTLNGQYALRV 316
Query: 301 TDRINFDQKSLKN 313
IN +L
Sbjct: 317 EHLINPVLNALDE 329
>gi|297617150|ref|YP_003702309.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
DSM 12680]
gi|297144987|gb|ADI01744.1| flagellar motor switch protein FliM [Syntrophothermus lipocalidus
DSM 12680]
Length = 330
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 52/312 (16%), Positives = 104/312 (33%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+R + K + K + Y + + ++ V I
Sbjct: 27 LRQEQTKKKIRLYDFRRPNKF------SKDQLHTLQVIFENYSRSVSTYLSAQLRAAVQI 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + + S + SL + + + NL +L+ +LG
Sbjct: 81 DVLSVEQLTYDEFMRSLPNPTIMCVFSLQPLEGSAIMEINPNLGFAMLDRILGGPGLPPE 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R L+ +E L +R ++ + L + S E P ++ + +E
Sbjct: 141 RI--RPLTEIEITLIERLAQRMLSYLEEPWSGIIELQPVMDRIE--SNPQFTQIVSPSEM 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---FARKTYQ 237
V I++ I +V S + IP L T + S + E D +
Sbjct: 197 VVIISLESKIGDVLSLINICIPFLVLESITGKLNVNYYYSSSVKERSKDSALVLKNRIEN 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
V + I T+++++ L G VIP R + K + + G VG
Sbjct: 257 AMVPVKILIGSTVITVRELLELAPGDVIPLERRLDEDLEVVIGQKPKFRGKPGVVGNRLA 316
Query: 298 IRITDRINFDQK 309
++IT+ ++
Sbjct: 317 LKITEIVSEVDD 328
>gi|94986472|ref|YP_594405.1| flagellar motor switch protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94730721|emb|CAJ54083.1| Flagellar motor switch protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 325
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 45/303 (14%), Positives = 93/303 (30%), Gaps = 13/303 (4%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P R+ + + + + + V+++ S
Sbjct: 32 DSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAIRKRVELNPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S + + N I + LV L+EN+ G ++ R
Sbjct: 86 MTKFGDFMRSLPVPTSINIFKMDPLRGNAIIVVDSRLVFALVENVFGGIGSQP-KIEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + R I + + + LE + ++ V IN
Sbjct: 145 FTRIEQVIVDRIIKIALDNMEESWRPVHDVK--LELIRSEINPQFAAIVPPSDVVIVINF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +++ S + IP T+ S Q + + + + V + R
Sbjct: 203 EVELDSSIGSMTICIPYATIEPIRSKLHASFQTERLEIDHAWVGRLKERLLETPVELKVR 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + T ++ LKIG V+ + + G Y G V N +I I
Sbjct: 263 MGNTQITGNQLLRLKIGDVLVLDTDVEDLLECTVAGVTKYWGIAGTVKSNKAYQI---IK 319
Query: 306 FDQ 308
++
Sbjct: 320 EEE 322
>gi|253682358|ref|ZP_04863155.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
1873]
gi|253562070|gb|EES91522.1| flagellar motor switch protein FliM [Clostridium botulinum D str.
1873]
Length = 331
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + ++ +V I + Q + IHS + +
Sbjct: 48 SKDHIRTLELIHDNFARIISNYLTAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ S + + +++ LLG + R + ++K + K+ + A L
Sbjct: 108 MPPLSGSILFETNPQFAYKVIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ P +E N NE V I ++ + ++ + IP ++
Sbjct: 166 LAWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + + E + ++ + + + + K T+ + +TL +G V
Sbjct: 224 KVLDKLVVQYWFRENDTDTLEQSKEKLRKRMNIVELPMTAVLGSTKLTVGEFLTLSVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ + + + K + G +GKN ++I D I+ D +
Sbjct: 284 VTLDNLTSSPVKMMVGDKPYLLGKPGIIGKNRGVQILDIIDKDVE 328
>gi|188534127|ref|YP_001907924.1| flagellar motor switch protein FliM [Erwinia tasmaniensis Et1/99]
gi|188029169|emb|CAO97041.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
Length = 336
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 39/306 (12%), Positives = 94/306 (30%), Gaps = 10/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ + P P R+ + + + + + + DI+
Sbjct: 28 NKKEGEDHIRPYDPNTQRRVV------RERLQALEIINERFARAYRMALFNLLRRSPDIT 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + L + S +LV ++NL G +
Sbjct: 82 VGAIKIQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTK 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ R + ++ + N N+ V
Sbjct: 142 VEGREFTHTEQRVIGRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIV 200
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNV 240
T + I N+ F + IP + ++ ++ +Q E D ++ +
Sbjct: 201 VTTPFQVEIGNLTGEFNICIPFSMIEPLRETLVNPPLENSLSQDETWRDTLVKQVQHSEL 260
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + ++ LK G V+P I +G + + + G + K + +R+
Sbjct: 261 ELVANFADVSMRISRLLALKPGDVLPIDKP--DRIIAHVDGVPVLTSQYGTLNKQFALRV 318
Query: 301 TDRINF 306
IN
Sbjct: 319 EHLINP 324
>gi|332994114|gb|AEF04169.1| flagellar motor switch protein FliM [Alteromonas sp. SN2]
Length = 352
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 11/300 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+T R+ + + + + M ++S
Sbjct: 30 SDASTLEYDFSSQDRIVRG------RMPTLEIVNERFARHMRVSLFNMMRRSAEVSINGI 83
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
Q KF IH+ + I LV L++N G ++ R
Sbjct: 84 QMIKFGEYIHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFFGGDGRYHAKIEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+++ + + I + + + + E E V +
Sbjct: 144 EFTPTERRIIQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSPTEVVVISS 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ ++ F + +P L + + Q+ E+ + + V + T
Sbjct: 202 FHIELDGGGGDFHVSLPYSMLEPIRELLDAGVQSDKEDTDLRWSKALRDEIMDVKVALTT 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L+ V+ K G++IP + + +LGR N ++I ++I
Sbjct: 262 HMLDVDVSLRQVMEFKPGEIIPVEMP--ETITVLIEDLPTFRAKLGRSRDNLALKIVEKI 319
>gi|304311107|ref|YP_003810705.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
gi|301796840|emb|CBL45052.1| Flagellar motor switch protein [gamma proteobacterium HdN1]
Length = 354
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 12/308 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G R+ + + ++ + D++
Sbjct: 27 SGDDSADGIKNYDLSTQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVA 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
Q KF +HS + + LV L++N G +
Sbjct: 81 VGGVQVIKFGEYVHSLYVPTSLNMVRIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HVK 139
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E ++ + + Q + + E +E V
Sbjct: 140 IEGREFTPTENRVVQLVLKQAFKDMEEAWKAVLPVK--FEYLSSEVNPALANIVSPSEVV 197
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
++ ++ L +P + + S Q+ NQ E + + NV
Sbjct: 198 VVNTFHIELDGGGGDLQLTVPYSMIEPLREVLDSGVQSDVGNQDERWMSSLREEIMGANV 257
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
++ ++ +K L ++ LK G V+ ++ AN Y +LG + Y ++I
Sbjct: 258 HLRCKLLDRKIKLSELAALKTGDVLQVEMP--EHVMIYANEVPTYRGKLGTSREKYAVKI 315
Query: 301 TDRINFDQ 308
+++ +
Sbjct: 316 AEKVQRPE 323
>gi|27365287|ref|NP_760815.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
gi|37680658|ref|NP_935267.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
gi|320155671|ref|YP_004188050.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
gi|27361434|gb|AAO10342.1| flagellar motor switch protein FliM [Vibrio vulnificus CMCP6]
gi|37199407|dbj|BAC95238.1| flagellar motor switch protein FliM [Vibrio vulnificus YJ016]
gi|319930983|gb|ADV85847.1| flagellar motor switch protein FliM [Vibrio vulnificus MO6-24/O]
Length = 347
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 88/295 (29%), Gaps = 11/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + I LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + VN + K
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+D++ L+ G VIP + A++ Y ++G+ + ++I++ I
Sbjct: 269 SLRDLMELRPGDVIPIEMPKH--AVMFVEELPTYRVKMGQSNEKLAVQISEEIER 321
>gi|238782828|ref|ZP_04626857.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
43970]
gi|238716251|gb|EEQ08234.1| Flagellar motor switch protein fliM [Yersinia bercovieri ATCC
43970]
Length = 332
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 42/306 (13%), Positives = 99/306 (32%), Gaps = 10/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+++ + P P R+ + + + + + DI+
Sbjct: 28 NNRTLDEGIKPYDPNTQRRVV------RERLHSLEIINERFARQFRIGLFNLLRRSPDIT 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + ++ S NLV ++NL G +
Sbjct: 82 AGNIKIQPYHDFARNLPVPTNLNLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTK 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R + E+++ R +A + S+ + I N N+ V
Sbjct: 142 ADGREFTPTEQRVINRMLAMALEAYDFAWSSIFKLKTEYVRAE-IQVKFTNITSSPNDIV 200
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240
T + I F + IP + + S S + + + A + + +
Sbjct: 201 VTTPFYVEIGPHRGEFDICIPFSIIEPLRELLTSPPMESSRQEEKQWRNTLASQVRETEL 260
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T L +++++K G VIP + +G ++S + G + K Y +++
Sbjct: 261 ELVAKFADISTRLSNIMSMKEGDVIPIDKK--ESIEACVDGVPVFSGKYGYMNKQYALKV 318
Query: 301 TDRINF 306
+N
Sbjct: 319 EKILNP 324
>gi|241203098|ref|YP_002974194.1| surface presentation of antigens (SPOA) protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240856988|gb|ACS54655.1| surface presentation of antigens (SPOA) protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 316
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 103/305 (33%), Positives = 169/305 (55%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI SS G +Y +F P + K + LDV ++Y C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDRGGVAKICSSFGEIYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H+I N A+L +WS N + C N VITL+E+LLGA+ +TI + +R LS +E
Sbjct: 72 HLIEDLSANVTLVDATLRNWSQNITLACGNGFVITLMEHLLGATADTIEEPADRLLSIIE 131
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +I+ VL ++ P+L + +D + +EF INM++T+
Sbjct: 132 LDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHALDARARPPEDRPDEFAAAINMSITLA 191
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ S F LI+PQ LLKT + + ++ +S + + + + +V ++ +I L+
Sbjct: 192 GIVSEFALIVPQTALLKTKVTPPKPKRQATGKSPEWTEQLGDQVRRSHVTLEAKIRLQDL 251
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D + +
Sbjct: 252 TLRTISKLMVGDVIPFRDHGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDELI 311
Query: 312 KNFLH 316
++ ++
Sbjct: 312 RHLMN 316
>gi|303240276|ref|ZP_07326795.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
CD2]
gi|302592186|gb|EFL61915.1| flagellar motor switch protein FliM [Acetivibrio cellulolyticus
CD2]
Length = 329
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 8/307 (2%)
Query: 7 HKNTSPLHPILL-ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H T+P + K K + + Y + L + V ++ S
Sbjct: 26 HMTTTPEEKKIRNHDFRRPSKFAKDHMKTLNIIHDNYARLLTNFLSGYLRTLVQVAVISV 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
++ + +S V + S S + + + L++ +LG + ++ R
Sbjct: 86 EAIAYYEFNNSISNPAVLAIVDFSPLSGSIIFEMAPPIAYALIDRILGGKGSPMEKI--R 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ VE + +R I Q+ ++ + P LE + +NE V I
Sbjct: 144 EFTEVELAIIERIIIQVLNLMREPWENVIAIRPRLEKIET--NAQFAQIISANEMVALIT 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ I +V + IP + N + ++ + D K V +
Sbjct: 202 LGAKIGDVEGMINICIPHMVVEPIVSKLSTKFWFSNSEKEKTNESKDTIELKIENTKVPV 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + D + L+ G VIP + + G I++ +
Sbjct: 262 RAVLGRSTILVNDFLELQPGDVIPLDSSVSGNLEILVGDLLKFYGTPGVKKNRVAIKVNE 321
Query: 303 RINFDQK 309
+ +++
Sbjct: 322 VVRGEEE 328
>gi|259908765|ref|YP_002649121.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
gi|224964387|emb|CAX55896.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
gi|283478741|emb|CAY74657.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163]
Length = 336
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + + DI+ + +
Sbjct: 33 DSHIRPYDPNTQRRVV------RERLQALEIINERFARSYRMALFNLLRRSPDITVGAIK 86
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L + S +LV ++NL G ++ R
Sbjct: 87 IQPYHEFARNLPVPTNLNLIHLKPLRGTALVVFSPSLVFIAVDNLFGGDGRFPTKVEGRE 146
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ +R + ++ + N N+ V T
Sbjct: 147 FTHTEQRVIRRMLKLALEGYSEAWKPIYPLDVEYVRSE-MQVKFTNITTSPNDIVVTTPF 205
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ I N+ F + IP + ++ S + E+ D ++ + +
Sbjct: 206 HVEIGNLTGEFNICIPFSMIEPLRETLVNPPIENSLTEDENWRDTLVKQVQHSELELVAN 265
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ ++ LK G V+P I +G + + + G + K Y +R+ IN
Sbjct: 266 FADVSMRISRLLALKPGDVLPIEKL--DRIIAHVDGVPVLTSQYGTLNKQYALRVEHLIN 323
Query: 306 F 306
Sbjct: 324 P 324
>gi|254478863|ref|ZP_05092227.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
DSM 12653]
gi|214035176|gb|EEB75886.1| flagellar motor switch protein FliM [Carboxydibrachium pacificum
DSM 12653]
Length = 330
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 99/284 (34%), Gaps = 6/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + L + V+++ S + +S +
Sbjct: 48 SKEQLRTLQMIFENFSRSLTSFLSGYLRTIVNVAVVSVDQLTYYEFSNSLNNPVFIAIID 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
S F + +NN +L+ LLG + + +R + +E L + + QI +L
Sbjct: 108 ASPLEGLFLLELNNNTTYAILDRLLGGMGK--GEFLDRDYTEIEVNLLTKIVKQILPLLE 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + +P+L + NE V +++ I +P TL
Sbjct: 166 EPWSNIIDLTPSLMRVET--NSQFAQIISPNETVALCTLSIKINETEGMMNFCMPHLTLE 223
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + + + K + + + ++ T+ D++ ++G VI
Sbjct: 224 PIVPKLTTKFWFSSMKKEEKVNPELIKEKIDKTYIPLTVQLGSTTVTVGDLLKFEVGDVI 283
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
R + + K + G K Y+++IT+ I +
Sbjct: 284 MLDKRYNEPVEVIIDKKVKFKGIPGIKSKRYSVKITEVIYKGDE 327
>gi|312884904|ref|ZP_07744594.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367381|gb|EFP94943.1| flagellar motor switch protein FliM [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 348
Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 11/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ + R+ + + + L + ++S Q
Sbjct: 31 EGSVDFDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQM 84
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF ++ + + LV L+EN G ++ R
Sbjct: 85 MKFGEYQNTLYVPTSLNMVRFRPLKGTGLVTMEARLVFILVENFFGGEGRYHSRIEGREF 144
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ + + I + S E E + + +
Sbjct: 145 TPTERRIVQLLLKIIFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFH 202
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ F ++ P + + + Q+ + + +N +
Sbjct: 203 VEVDGGGGDFHVVFPYSMVEPIRELLDAGVQSDKMEADVRWSSALKEEIMDVPINFRVNL 262
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+D++ L+ G +IP A++ Y ++GR I+I++ I
Sbjct: 263 LEHDIALRDLMELQPGDIIPVEMPPH--AVMFVEELPTYRVKMGRSSDKLAIQISEEIKR 320
Query: 307 DQ 308
Sbjct: 321 PD 322
>gi|73532540|dbj|BAE19828.1| flagellar motor switch protein [Edwardsiella tarda]
Length = 337
Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 98/304 (32%), Gaps = 10/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + P P R+ + + + + + + DI+
Sbjct: 31 ENHDGDVRPYDPTTQRRVV------RERLQALEIVNERFARQFRMGLFNLVRRSPDITVG 84
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + + + L + +LV ++NL G ++
Sbjct: 85 AVRIQPYHEFARNLPVPTNLNLVHLKPLRGTALMVFEPSLVFMAVDNLFGGDGRFPTKVD 144
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ +R + + I N N+ V T
Sbjct: 145 GREFTHTEQRVIQRMLRLALDAYRDAWGAIFKLDVKYVR-SKIQVKFTNITTSPNDIVVT 203
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNI 242
+ + ++ F + IP + + ++ + S+ + + D +++ + +
Sbjct: 204 TPFTVEVGALSGEFNICIPFSMIGTLRELLVNPPLENSKQEDQHWRDTLSKQVQHSELEL 263
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L DV+ L+IG V+P + + +G + +C+ G Y +R+
Sbjct: 264 VANFVDVPLRLSDVLKLQIGDVLPIDRP--DRLVANVDGVPVLTCQYGCYHGQYALRVEK 321
Query: 303 RINF 306
IN
Sbjct: 322 MINP 325
>gi|302185372|ref|ZP_07262045.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae 642]
Length = 322
Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%)
Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
N+ P R+ + + ++ + D
Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSAD 78
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
++ Q KF +HS + A + LV L++N G
Sbjct: 79 VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R + E ++ + + Q L + E + E +E
Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238
V ++ ++ + +P + + + Q+ ++Q E ++ +
Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
NV + T I ++ L+D++ ++ G VIP +L ANG + +LG +
Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVLRANGVPSFKVKLGSHKGKMAL 313
Query: 299 RITDRI 304
++ + I
Sbjct: 314 QVIEPI 319
>gi|238916760|ref|YP_002930277.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
27750]
gi|238872120|gb|ACR71830.1| flagellar motor switch protein FliM [Eubacterium eligens ATCC
27750]
Length = 327
Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 40/308 (12%), Positives = 101/308 (32%), Gaps = 13/308 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ K ++ K + + + + L + V + +
Sbjct: 30 TEEKQVKNYDFARPSKF------SKEHLRTLEIIFEHFGRLLATNLPAYLRKSVSVDVVN 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ +S ++ + + S N + ++NL +++ LLG + ++ +
Sbjct: 84 SEVVIYSEFSNALSNPVLLGVVGMQPLSGNIIMEMASNLGFAIVDRLLGGAGNSLDK--E 141
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R S +E + +R ++ + + +P LE + +E + +
Sbjct: 142 RDFSEIELSILERIFTVCVNLMQEPWENVVKVNPRLERIET--NSQFAQIISPSETIAIV 199
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVN 241
+N+ I +V + +P TL N E + D + +
Sbjct: 200 TINLKIGDVEGLVNICLPFATLEPVMDKLNTKYWFSNMQEKDTNTYEDAIETVIDKAMIP 259
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + K ++ D L+IG +I + + + + G Y +R+T
Sbjct: 260 VKAVLGTSKISVSDFANLQIGDIIRIDKKVDQELEVFVGNIKKFKALPGYYEDKYAVRVT 319
Query: 302 DRINFDQK 309
+ I + +
Sbjct: 320 EVIRKESE 327
>gi|256830498|ref|YP_003159226.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
4028]
gi|256579674|gb|ACU90810.1| flagellar motor switch protein FliM [Desulfomicrobium baculatum DSM
4028]
Length = 325
Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 10/292 (3%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
R+ + + + + M VD++ S KF
Sbjct: 37 AFDLANQDRIIRG------RMPVLEIINDRFSRLCTSALANTMRKRVDVNPISIDMSKFG 90
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ S + + N + LV +L+EN G + ++ R + +E
Sbjct: 91 DFMRSLPVPTSINIFKIDPLRGNALLVVDTRLVFSLVENFFGGAGSQP-KIEGRDFTPIE 149
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
+ + + + I A L E ++E + T ++ V I+ + +E
Sbjct: 150 QSIIVKVVKIILANLEDAWRPVHEV--SIELLRSEINPQFATIVPPSDVVVVISFEVELE 207
Query: 192 NVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
N S VL +P T+ + Q + I F + + V+++ +
Sbjct: 208 NALGSMVLALPYATIEPIRSKLYAAFQTERLEIDHAWISRFRDRLMETPVDMNVTFGTTQ 267
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
T + ++ +K+G ++ E +G + G V N +I
Sbjct: 268 ITGRQLLDMKVGDILMLDQDEDDMLSGRIHGILKFFGLPGFVKGNKAFKIIK 319
>gi|114566396|ref|YP_753550.1| hypothetical protein Swol_0861 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337331|gb|ABI68179.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 328
Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 41/285 (14%), Positives = 96/285 (33%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + Y + L ++ + + + S + + I S + + S
Sbjct: 48 SKDQIHTLQVIYENYARTLGTYLSGQLRVPLQVELLSVEQLTYEEFIRSIPNPTILNIFS 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L + + + NL L+ LLG + R+L+ +E+ + +R ++ L
Sbjct: 108 LYPLHGSAIMEINPNLGFAFLDRLLGGPGYAPSK--ARALTEIEQTVIERLSQRMLDYLE 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P+LE + E + +++ + +V + IP L
Sbjct: 166 EPWGSIIQIEPSLERVET--NPQFTQLVQPTEIMIIVSLETRMGDVMGMINICIPFLVLE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
++ +S I K + I + T++D++ L +G V
Sbjct: 224 PILDKLNVHYYYSTAAQERSPANIAAIRTKLENTTIPIKVVMGKTVITVRDLLALSVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
IP + + + + G I++T + + +
Sbjct: 284 IPLNRNISQELDIVIGNRAKFLGKPGVFANRMAIQVTGIVEEESE 328
>gi|262166227|ref|ZP_06033964.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
gi|262025943|gb|EEY44611.1| flagellar motor switch protein FliM [Vibrio mimicus VM223]
Length = 300
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 35/278 (12%), Positives = 88/278 (31%), Gaps = 5/278 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
+ + + L + ++S Q KF ++ +
Sbjct: 1 MPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPL 60
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ LV L+EN G ++ R + E+++ + + + A + S
Sbjct: 61 KGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWS 120
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
E E + + ++ ++ F +++P +
Sbjct: 121 PVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDGGGGDFHMVMPYSMVEPIRE 178
Query: 212 ISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + Q+ + + VN + L+D++ L++G VIP
Sbjct: 179 LLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDIALRDLMELQVGDVIPIKMP 238
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
A++ Y ++GR G+ ++++++I
Sbjct: 239 --EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 274
>gi|261209862|ref|ZP_05924163.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
gi|260841048|gb|EEX67573.1| flagellar motor switch protein FliM [Vibrio sp. RC341]
Length = 349
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 11/297 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHLRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + + LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFFGGDGRYHARIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + A + S E E + + ++ ++
Sbjct: 151 RVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHVEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + + VN +
Sbjct: 209 GGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSTALREEIMDVPVNFRVNLLEMDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L+D++ L++G VIP A++ Y ++GR G+ ++++++I
Sbjct: 269 ALRDLMELQVGDVIPIKMP--EHAVMFVEELPTYRVKMGRSGEKLAVQVSEKIKRPD 323
>gi|149377878|ref|ZP_01895607.1| flagellar motor switch protein M [Marinobacter algicola DG893]
gi|149357820|gb|EDM46313.1| flagellar motor switch protein M [Marinobacter algicola DG893]
Length = 332
Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 12/301 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ R+ + + ++ + + D+S
Sbjct: 27 ETDEAGIKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVSTG 80
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF IH+ + + LV L++N G ++
Sbjct: 81 GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + + Q+ + + + E +E V
Sbjct: 140 GREFTPTETRIVQMVLDQVFHDMREAWHAVLKVD--FEYLSSEVNPAMANIVSPSEVVVV 197
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ ++ + +P + + + Q+ ++ E + +NV I
Sbjct: 198 STFHIELDGGGGELHMALPYSMIEPIRDVLDAGVQSDIDDVDERWVSALQEDIKDVNVPI 257
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+T + ++ +L+D+ LK G +IP L+ANG +Y +G +RI D
Sbjct: 258 NTTVCRRRISLRDIAKLKEGDIIPVEIP--ELLTLTANGIPVYKATMGTRDGKLALRIHD 315
Query: 303 R 303
R
Sbjct: 316 R 316
>gi|317129197|ref|YP_004095479.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
2522]
gi|315474145|gb|ADU30748.1| flagellar motor switch protein FliM [Bacillus cellulosilyticus DSM
2522]
Length = 332
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 42/316 (13%), Positives = 108/316 (34%), Gaps = 13/316 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ + K R K + + + Y + L ++ V +
Sbjct: 27 LKKEETQKKIKVYDFKRALRF------SKDQIRSLTRIHENYARLLTTQLSAQLRTYVQV 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ S + I S + + + F I + N+ +L+ +LG E +
Sbjct: 81 AVASVDQLPYDEFIRSVPKMTILNVFEPFPLDGRFVIEVNPNIAYAMLDRMLGGQGEALN 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ + L+ +E K+ + + L + + + P +++ + NE
Sbjct: 141 KVES--LTEIETKILSQLFQRSLETLREAWESVVDLDPVMDEIEV--NPQFLQLVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V I+++ TI + + +P + Q K +++ + + Q
Sbjct: 197 VVVISLSTTIGEASGMMNICLPHVVIESILPKLSIHLWMQQKKKDRQPGELSALEKNLKQ 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+++ + + ++ + + L VI ++ + Y + G+V
Sbjct: 257 APLDVIVELGQSQISIAEFLQLGENDVIELNQTIDDPLLVKLGNEPKYYSQPGKVKGKLA 316
Query: 298 IRITDRINFDQKSLKN 313
++ITD I + +S
Sbjct: 317 VQITDSIVKEGESDDE 332
>gi|118443285|ref|YP_877941.1| flagellar motor switch protein FliM [Clostridium novyi NT]
gi|118133741|gb|ABK60785.1| flagellar motor switch protein FliM [Clostridium novyi NT]
Length = 331
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 97/285 (34%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + ++ +V I+ + Q + IHS + +
Sbjct: 48 SKDHIRTLELIHDNFARTISNYLTAQVRTNVKINIETVQQITYEEFIHSVPNPTILTIFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ S + + +++ LLG S + R + ++K + K+ + A L
Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGSGT--GKYKTREFTDIDKNIIKQINKGLIANLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
E P +E N NE V I ++ + + + IP ++
Sbjct: 166 LAWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNNTFINICIPYLSIE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + + E + ++ + + + + T+ +TL +G V
Sbjct: 224 KVLDKLVVQYWFRENNTETLEGSKEKLRKRMNVVELPMTVVLGSTNLTIGQFLTLSVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + + + G +GKN ++I D I+ D +
Sbjct: 284 ITLDSLTSSPVKVVVGNEPYLLGRPGTIGKNRGVQILDIIDKDVE 328
>gi|51596032|ref|YP_070223.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
32953]
gi|153949279|ref|YP_001401268.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
31758]
gi|51589314|emb|CAH20935.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
32953]
gi|152960774|gb|ABS48235.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis IP
31758]
Length = 333
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ + P P R+ + + + + + DI+
Sbjct: 29 ANETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + +LV ++NL G ++
Sbjct: 83 IKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + I N N+ V +
Sbjct: 143 REFTHTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVST 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 202 PFQVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319
Query: 304 INF 306
IN
Sbjct: 320 INP 322
>gi|311695206|gb|ADP98079.1| flagellar motor switch protein FliM-like protein [marine bacterium
HP15]
Length = 332
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 12/301 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ R+ + + ++ M + D+S
Sbjct: 27 ETDDTGIKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLMRRNADVSTG 80
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF IH+ + + LV L++N G ++
Sbjct: 81 GVQIMKFGEYIHTLYVPTSLNLCKVRPLRGTSLFVLDAKLVFKLVDNFFGGEGR-HAKIE 139
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + + Q+ + + + E +E V
Sbjct: 140 GREFTPTETRIVQMVLDQVFHDMKEAWHAVLKVD--FEYLSSEVNPAMANIVSPSEVVVV 197
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ ++ +P + + + Q+ ++ E ++ +++V I
Sbjct: 198 STFHIELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDVDERWVNALQEDIKEVSVPI 257
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+T + ++ +L+D+ +K G +IP ++ANG IY LG +RI +
Sbjct: 258 NTTVCRRRISLRDIAKMKAGDIIPVEIP--EHLTVTANGIPIYKATLGTRDGKLALRIHE 315
Query: 303 R 303
R
Sbjct: 316 R 316
>gi|22126366|ref|NP_669789.1| flagellar motor switch protein FliM [Yersinia pestis KIM 10]
gi|45441387|ref|NP_992926.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Microtus str. 91001]
gi|108807195|ref|YP_651111.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua]
gi|108812461|ref|YP_648228.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
gi|145598589|ref|YP_001162665.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F]
gi|149366229|ref|ZP_01888264.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125]
gi|165925921|ref|ZP_02221753.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938773|ref|ZP_02227328.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010886|ref|ZP_02231784.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166210779|ref|ZP_02236814.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401189|ref|ZP_02306692.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167420157|ref|ZP_02311910.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425859|ref|ZP_02317612.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467512|ref|ZP_02332216.1| flagellar motor switch protein FliM [Yersinia pestis FV-1]
gi|170024624|ref|YP_001721129.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
YPIII]
gi|186895137|ref|YP_001872249.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
PB1/+]
gi|218928944|ref|YP_002346819.1| flagellar motor switch protein FliM [Yersinia pestis CO92]
gi|229896268|ref|ZP_04511438.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A]
gi|229897205|ref|ZP_04512361.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897932|ref|ZP_04513083.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902837|ref|ZP_04517954.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
gi|270486623|ref|ZP_06203697.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27]
gi|294504010|ref|YP_003568072.1| flagellar motor switch protein [Yersinia pestis Z176003]
gi|21959351|gb|AAM86040.1|AE013852_2 flagellar motor switch protein [Yersinia pestis KIM 10]
gi|45436247|gb|AAS61803.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Microtus str. 91001]
gi|108776109|gb|ABG18628.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
gi|108779108|gb|ABG13166.1| flagellar motor switch protein FliM [Yersinia pestis Antiqua]
gi|115347555|emb|CAL20464.1| flagellar motor switch protein FliM [Yersinia pestis CO92]
gi|145210285|gb|ABP39692.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides F]
gi|149292642|gb|EDM42716.1| flagellar motor switch protein FliM [Yersinia pestis CA88-4125]
gi|165913387|gb|EDR32009.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922125|gb|EDR39302.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990230|gb|EDR42531.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166207959|gb|EDR52439.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961852|gb|EDR57873.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049578|gb|EDR60986.1| flagellar motor switch protein FliM [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055258|gb|EDR65055.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751158|gb|ACA68676.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
YPIII]
gi|186698163|gb|ACC88792.1| flagellar motor switch protein FliM [Yersinia pseudotuberculosis
PB1/+]
gi|229680284|gb|EEO76383.1| flagellar motor switch protein FliM [Yersinia pestis Nepal516]
gi|229688973|gb|EEO81038.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693542|gb|EEO83591.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701191|gb|EEO89220.1| flagellar motor switch protein FliM [Yersinia pestis Pestoides A]
gi|262361804|gb|ACY58525.1| flagellar motor switch protein [Yersinia pestis D106004]
gi|262366060|gb|ACY62617.1| flagellar motor switch protein [Yersinia pestis D182038]
gi|270335127|gb|EFA45904.1| flagellar motor switch protein FliM [Yersinia pestis KIM D27]
gi|294354469|gb|ADE64810.1| flagellar motor switch protein [Yersinia pestis Z176003]
gi|320015439|gb|ADV99010.1| flagellar motor switch protein FliM [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 333
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ + P P R+ + + + + + DI+
Sbjct: 29 ANETDVKPYDPTTQRRVV------RERLHALEIINERFARQFRMGLFNLLRRSPDITVGP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + +LV ++NL G ++
Sbjct: 83 IKIQPYHDFARNLPVPTNLNLVHLKPLRGTALFVFAPSLVFIAVDNLFGGDGRFPTKVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + I N N+ V +
Sbjct: 143 REFTHTEQRVITRMLRLALDAYRDAWAAIYKIDVEYVRSE-IQVKFTNITTSPNDIVVST 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
+ I ++ F + IP + + + + S + + ++ + +
Sbjct: 202 PFQVEIGTLSGEFNICIPFAMIEPLRELLTNPPLENSRQEDNYWRETLVKQVQHSELELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 262 ANFVDIPLRLSQILKLQPGDVLPIEKP--DRLIGHVDGVPVLTSQYGTLNGQYALRVEHL 319
Query: 304 INF 306
IN
Sbjct: 320 INP 322
>gi|28899016|ref|NP_798621.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
2210633]
gi|153837001|ref|ZP_01989668.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ3810]
gi|260365238|ref|ZP_05777795.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
gi|260878788|ref|ZP_05891143.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AN-5034]
gi|260897383|ref|ZP_05905879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
Peru-466]
gi|260899942|ref|ZP_05908337.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ4037]
gi|4322004|gb|AAD15907.1| polar flagellar switch protein FliM [Vibrio parahaemolyticus]
gi|28807235|dbj|BAC60505.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus RIMD
2210633]
gi|149749774|gb|EDM60519.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ3810]
gi|308088268|gb|EFO37963.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
Peru-466]
gi|308094184|gb|EFO43879.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AN-5034]
gi|308107409|gb|EFO44949.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ4037]
gi|308115479|gb|EFO53019.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus K5030]
gi|328474447|gb|EGF45252.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus 10329]
Length = 348
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 34/295 (11%), Positives = 84/295 (28%), Gaps = 11/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ + I LV L+EN G ++ R + E+
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVENFFGGDGRFHAKIEGREFTPTER 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + + + + S E E + + ++ ++
Sbjct: 151 RIIQLLLKIVFEDYKEAWSPVMGVE--FEYLDSEVNPSMANIVSPTEVIVVSSFHIEVDG 208
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +++P + + + Q+ + VN + K
Sbjct: 209 GGGDFHVVMPYSMVEPIRELLDAGVQSDKMETDVRWSSALREEIMDCPVNFRVNLLEKDI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L+D++ L+ G +IP A + Y ++GR ++++ I
Sbjct: 269 SLRDLMELQPGDIIPIEMP--EHATMFIEDLPTYRVKMGRSEDKLAVQVSQEIER 321
>gi|70729040|ref|YP_258774.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
gi|68343339|gb|AAY90945.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf-5]
Length = 322
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 92/299 (30%), Gaps = 12/299 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + ++ + D++ Q
Sbjct: 34 SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVM 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +HS + + LV L++N G ++ R +
Sbjct: 88 KFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q L + + E +E + ++
Sbjct: 147 PTELRVVRMVLEQAFVDLKEAWQAIMPVN--FEYINSEVNPAMANIVGPSEAIVVSTFHI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P + + + Q+ ++Q E + V + +
Sbjct: 205 ELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWSKALREDVLDVAVPLSATVA 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++ L+D++ ++ G VIP E I+ ANG + +LG N +++ + I
Sbjct: 265 RRQLRLRDILHMQPGDVIPVELPED--MIMRANGVPSFKVKLGSHKGNLALQVIEPIER 321
>gi|253990101|ref|YP_003041457.1| flagellar motor switch protein FliM [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781551|emb|CAQ84714.1| flagellar motor switch protein flim [Photorhabdus asymbiotica]
Length = 334
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 35/313 (11%), Positives = 91/313 (29%), Gaps = 10/313 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
S P P R+ + + + + + + DI+
Sbjct: 26 NTASRENEVRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNMLRRSPDIT 79
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + L + +LV ++NL G +
Sbjct: 80 VGAIKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFAPSLVYIAVDNLFGGDGRFPTK 139
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ R + + + + N N+ V
Sbjct: 140 VEGREFTNTEQRVINRMLRMALDSYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIV 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNV 240
T + I ++ F + IP + + ++ + + ++ +
Sbjct: 199 VTTPFQVEIGALSGEFNICIPFAMIEPLRERLTNPPLENVRQEDSLWRESLVKQVQHSEL 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L ++ L+ G ++P I+ +G + + + G + Y +R+
Sbjct: 259 ELVANFVDIPLRLSKILQLQPGDILPIDKP--ERLIVHVDGVPVLTSQYGTLNGQYALRV 316
Query: 301 TDRINFDQKSLKN 313
IN +L
Sbjct: 317 EHLINPVLNALDE 329
>gi|209963533|ref|YP_002296448.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
gi|7025355|gb|AAF35846.1|AF220002_3 lateral flagellar motor switch protein FliM [Rhodospirillum
centenum]
gi|209956999|gb|ACI97635.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
Length = 352
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 105/313 (33%), Gaps = 3/313 (0%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ + S ++ ++ + + + L F+ V+++
Sbjct: 42 VDDSKSVRTRSVIDQIVNSSFVNYDRLPMLDVVFDRLVRLLNTSFRNLTSGTVEVTVQQI 101
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
S +F + + + W ++ + + L+ ++++ LLG + R
Sbjct: 102 ASVRFGDYLSGIPLPSLIAVVRAEEWDNHCLLTVDSELIYSIVDILLGGRRSDPAPIDGR 161
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ +E+ LA+R I + L S E + SN +
Sbjct: 162 PYTVIERALAERLIRTVLKDLGTAFSPLSAVGFACERVET--TPQFAVITRSNNACISAR 219
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ ++ L+IP TL + L + + + + +V++
Sbjct: 220 FQVALDGRGGCVSLLIPYATLEPIRDLLLQMFMGEKFGRDSMWETHLKNELRRTSVDLSA 279
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + +L D++ K G + R A+L+ ++ E+G+ N IRI +
Sbjct: 280 VLGQAQVSLTDLLAWKEGTQLVLDMRPDAQALLTCGHVPMFVGEMGQRNGNVAIRIDADL 339
Query: 305 NFDQKSLKNFLHK 317
+ + L +
Sbjct: 340 GAQDEVIHGLLQR 352
>gi|28869173|ref|NP_791792.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967550|ref|ZP_03395698.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato T1]
gi|301382887|ref|ZP_07231305.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato Max13]
gi|302061097|ref|ZP_07252638.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato K40]
gi|302131287|ref|ZP_07257277.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28852413|gb|AAO55487.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927851|gb|EEB61398.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tomato T1]
gi|330964686|gb|EGH64946.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331016994|gb|EGH97050.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 322
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + R+ + + ++ + D++
Sbjct: 30 SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +HS + A + LV L++N G ++
Sbjct: 84 VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E ++ + + Q L + E + E +E V
Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVIS 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
++ ++ + +P + + + Q+ ++Q E ++ +NV +
Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLT 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
T I ++ L+D++ ++ G VIP +L ANG + +LG +++ +
Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SDTLVLRANGVPSFKVKLGSHKGKMALQVIEP 318
Query: 304 I 304
I
Sbjct: 319 I 319
>gi|224534350|ref|ZP_03674928.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S]
gi|224514452|gb|EEF84768.1| flagellar motor switch protein FliM [Borrelia spielmanii A14S]
Length = 352
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I A +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E + + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K + + I K ++++++L G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLNKGDV 294
Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
+ L KE + C +G +G +++IT++I + LK
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347
>gi|66046676|ref|YP_236517.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae B728a]
gi|289678975|ref|ZP_06499865.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae FF5]
gi|63257383|gb|AAY38479.1| Flagellar motor switch protein FliM [Pseudomonas syringae pv.
syringae B728a]
gi|330972446|gb|EGH72512.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 322
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 43/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%)
Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
N+ P R+ + + ++ + D
Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSAD 78
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
++ Q KF +HS + A + LV L++N G
Sbjct: 79 VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R + E ++ + + Q L + E + E +E
Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238
V ++ ++ + +P + + + Q+ ++Q E ++ +
Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG +
Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMAL 313
Query: 299 RITDRI 304
++ + I
Sbjct: 314 QVIEPI 319
>gi|222084857|ref|YP_002543386.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
gi|221722305|gb|ACM25461.1| flagellar C-ring protein [Agrobacterium radiobacter K84]
Length = 314
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 2/316 (0%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M QS H + + P+L A+LTG LGD T+ K+ ++ G +Y +FLP I K + LDV +
Sbjct: 1 MSQQSTHPKQT-MDPVLFAKLTGGLGDPATLAKLGTAFGQVYAEFLPDIIKSETGLDVSV 59
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
Y C+SG S ++ N SL +WS NF +GC V+TL+E+LLGA ETI
Sbjct: 60 GYAGCRSGLMSELVAGIGSNCALVNGSLRNWSQNFLLGCGTGFVMTLMEHLLGAQPETID 119
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
R LS +E L+ +I+ VL ++ T P L+ Y+I+ +++F
Sbjct: 120 SPAARPLSVIELDLSVMVFDKIANVLRSAVNATGGFEPYLDPPYNIEDRPTPVAGQTDDF 179
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
I M +++ S V+I+PQ LL+T + + ++N S + + + + V
Sbjct: 180 AAAIAMTISLGKTVSEIVVIVPQYELLRTVVSAPRAKNPSAST-GAWAEQLNEQVRRSQV 238
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
++ RI L+ TL + L +G VIPF+ +SAN K++Y CE GR G+NYT+R+
Sbjct: 239 TLEARIRLQSLTLDTISRLAVGDVIPFMDTSDVQVEVSANSKDLYVCEFGRSGENYTVRV 298
Query: 301 TDRINFDQKSLKNFLH 316
D +N D + L++ ++
Sbjct: 299 KDTVNSDDELLRHLMN 314
>gi|238796938|ref|ZP_04640442.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
43969]
gi|238719198|gb|EEQ11010.1| Flagellar motor switch protein fliM [Yersinia mollaretii ATCC
43969]
Length = 332
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 94/306 (30%), Gaps = 10/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
++ P P R+ + + + + + DI+
Sbjct: 28 NNPALDVGIKPYDPNTQRRVV------RERLHSLEIINERFARQFRMGLFNLLRRSPDIT 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + + ++ S NLV ++NL G +
Sbjct: 82 AGNIKIQPYHEFARNLPVPTNLNLVHMNPLRGTALFVFSPNLVFMAVDNLFGGDGRFPTK 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R + E+++ KR + + S+ + I N N+ V
Sbjct: 142 ADGREFTPTEQRVIKRMLTMALEAYDFAWSSIFKLHTEYVRAE-IQVKFTNITSSPNDIV 200
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNV 240
T + I F + IP + + S S + + + A + + +
Sbjct: 201 VTTPFYVEIGPHRGEFDICIPFSIIEPLRELLTSPPMENSRQEEKQWRNTLASQVRETEL 260
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ T L V+ +K G VIP + +G ++S + G V K Y +++
Sbjct: 261 ELVASFADIPTRLSQVMKMKEGDVIPIDK--QESIEACVDGVPVFSGKYGCVNKQYALKV 318
Query: 301 TDRINF 306
+N
Sbjct: 319 EKMMNP 324
>gi|203284199|ref|YP_002221939.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|203287738|ref|YP_002222753.1| flagellar motor switch protein [Borrelia recurrentis A1]
gi|201083642|gb|ACH93233.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|201084958|gb|ACH94532.1| flagellar motor switch protein [Borrelia recurrentis A1]
Length = 352
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 100/293 (34%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I A +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E V + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K N+ + I K ++++++L+ G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDVLREKLEYTNMPLVAEIGEVKLKVREILSLEKGDV 294
Query: 265 IPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314
I + IL KE + C +G VG +++IT ++ + LK
Sbjct: 295 INLENSSIDQDLILKVGTKEKFKCRMGLVGNKISVQITRKVGEVEDFDLLKEL 347
>gi|92114085|ref|YP_574013.1| flagellar motor switch protein FliM [Chromohalobacter salexigens
DSM 3043]
gi|91797175|gb|ABE59314.1| flagellar motor switch protein FliM [Chromohalobacter salexigens
DSM 3043]
Length = 338
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 44/304 (14%), Positives = 99/304 (32%), Gaps = 12/304 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S P P R+ + + + + M DI+ S
Sbjct: 32 SREGKVRPFDPAKQHRII------RERLHALDIINERFARQFRVALFNLMRRSADITVES 85
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ +S + + ++ + + +LV +++NL G + +
Sbjct: 86 VRYQSYSEFSRNLPVPTNLNLITMKPLRGSALVVFPPSLVFMVVDNLFGGDGRFLTKSEG 145
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTT 183
R + E+++ R + ++ + +E +K NE V
Sbjct: 146 REFTRTEQRIIHRMLKMALEGYSESWKSVYPLD--IEYTRSELQVKFANITNSPNEIVVN 203
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNI 242
++ + N++S F + IP + I S + + ++ + A + +V +
Sbjct: 204 STFHVEVGNLSSEFNICIPYSMIEPIRDILASPLHDTHPDEEQQWEARMAHEIRHSSVEL 263
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L+DV L +G +IP +S +G + +C+ G +R+
Sbjct: 264 TADFVDIPLRLRDVTQLSVGDIIPIELP--EAVNVSVDGIPVMTCDYGSQKSQRALRVRH 321
Query: 303 RINF 306
I
Sbjct: 322 LIEH 325
>gi|224531918|ref|ZP_03672550.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116]
gi|224511383|gb|EEF81789.1| flagellar motor switch protein FliM [Borrelia valaisiana VS116]
Length = 352
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I A +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E + + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K + + I K ++++++L G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDV 294
Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
+ L KE + C +G +G +++IT++I + LK
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKISVQITEKIGDIKGFDLLKEL 347
>gi|187918152|ref|YP_001883715.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
gi|119861000|gb|AAX16795.1| flagellar motor switch protein FliM [Borrelia hermsii DAH]
Length = 352
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 43/293 (14%), Positives = 100/293 (34%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I + +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILSNMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E V + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K ++ + I K ++++++L+ G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDVLREKLENTDMLLVAEIGEVKLKVREILSLEKGDV 294
Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314
I IL K+ + C +G VG +++IT+++ + LK
Sbjct: 295 INLEDSPIDKDLILKVGTKQKFKCRMGLVGSKISVQITEKVGEVEDFDLLKEL 347
>gi|15594623|ref|NP_212412.1| flagellar motor switch protein FliM [Borrelia burgdorferi B31]
gi|111115103|ref|YP_709721.1| flagellar motor switch protein FliM [Borrelia afzelii PKo]
gi|195941368|ref|ZP_03086750.1| flagellar motor switch protein FliM [Borrelia burgdorferi 80a]
gi|216263834|ref|ZP_03435828.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1]
gi|216264557|ref|ZP_03436549.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a]
gi|218249869|ref|YP_002374801.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7]
gi|221217666|ref|ZP_03589134.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a]
gi|223888930|ref|ZP_03623521.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b]
gi|224533145|ref|ZP_03673745.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23]
gi|224533778|ref|ZP_03674366.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a]
gi|225549106|ref|ZP_03770081.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a]
gi|225550153|ref|ZP_03771113.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a]
gi|225552170|ref|ZP_03773110.1| flagellar motor switch protein FliM [Borrelia sp. SV1]
gi|226320579|ref|ZP_03796139.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805]
gi|226321596|ref|ZP_03797122.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26]
gi|3913687|sp|Q57511|FLIM_BORBU RecName: Full=Flagellar motor switch protein FliM
gi|1165263|gb|AAA85602.1| FliM [Borrelia burgdorferi]
gi|1185056|gb|AAB58965.1| switch protein [Borrelia burgdorferi]
gi|2688188|gb|AAC66670.1| flagellar motor switch protein (fliM) [Borrelia burgdorferi B31]
gi|110890377|gb|ABH01545.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|215979878|gb|EEC20700.1| flagellar motor switch protein FliM [Borrelia afzelii ACA-1]
gi|215981030|gb|EEC21837.1| flagellar motor switch protein FliM [Borrelia burgdorferi 156a]
gi|218165057|gb|ACK75118.1| flagellar motor switch protein FliM [Borrelia burgdorferi ZS7]
gi|221192343|gb|EEE18562.1| flagellar motor switch protein FliM [Borrelia burgdorferi 72a]
gi|223885746|gb|EEF56845.1| flagellar motor switch protein FliM [Borrelia burgdorferi 64b]
gi|224511872|gb|EEF82273.1| flagellar motor switch protein FliM [Borrelia burgdorferi WI91-23]
gi|224513071|gb|EEF83434.1| flagellar motor switch protein FliM [Borrelia burgdorferi CA-11.2a]
gi|225369265|gb|EEG98718.1| flagellar motor switch protein FliM [Borrelia burgdorferi 118a]
gi|225370332|gb|EEG99770.1| flagellar motor switch protein FliM [Borrelia burgdorferi 94a]
gi|225371168|gb|EEH00598.1| flagellar motor switch protein FliM [Borrelia sp. SV1]
gi|226232785|gb|EEH31538.1| flagellar motor switch protein FliM [Borrelia burgdorferi Bol26]
gi|226233998|gb|EEH32719.1| flagellar motor switch protein FliM [Borrelia burgdorferi 29805]
gi|312147869|gb|ADQ30528.1| flagellar motor switch protein FliM [Borrelia burgdorferi JD1]
gi|312149126|gb|ADQ29197.1| flagellar motor switch protein FliM [Borrelia burgdorferi N40]
Length = 352
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I A +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E + + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K + + I K ++++++L G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLVAEIGEVKLKVREILSLDKGDV 294
Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
+ L KE + C +G +G +++IT++I + LK
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347
>gi|331269275|ref|YP_004395767.1| flagellar motor switch protein FliM [Clostridium botulinum
BKT015925]
gi|329125825|gb|AEB75770.1| flagellar motor switch protein FliM [Clostridium botulinum
BKT015925]
Length = 331
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 42/285 (14%), Positives = 100/285 (35%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + ++ +V I + Q + IHS + +
Sbjct: 48 SKDHIRTLELIHDNFARIISNYLTAQVRTNVKIKIETVQQITYEEFIHSVPNPTILTIFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ S + + +++ LLG + R + ++K + K+ + A L
Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGPGVGQYKT--REFTDIDKNIIKQINKGLIANLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ P +E N NE V I ++ + ++ + IP ++
Sbjct: 166 LAWEDVIQVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + + E+ + R+ + + + + K T+ + +TL +G V
Sbjct: 224 KVLDKLVVQYWFRENDTDTLEESNEKLRRRMNVVELPMKAVLGSTKLTVGEFLTLSVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ + + + + G +GKN ++I D I+ D +
Sbjct: 284 VTLDALTSSPVKMMVGNQPYLLAKPGTMGKNRGVQILDIIDKDVE 328
>gi|83647849|ref|YP_436284.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
gi|83635892|gb|ABC31859.1| flagellar motor switch protein FliM [Hahella chejuensis KCTC 2396]
Length = 340
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 97/299 (32%), Gaps = 12/299 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + ++ + + D++ Q
Sbjct: 32 GVRSYDLTSQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRNADVASGGVQIL 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF IH+ + + LV L++N G ++ R +
Sbjct: 86 KFGEYIHTLYVPTSLNLVKIRPLRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q+ + + + + E +E V ++
Sbjct: 145 PTEIRIVQMVLEQVFHDMKEAWNAVMKVD--FEYVNSEVNPAMANIVSPSEVVVVSTFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P + + + Q+ ++ E I + + V ++ +
Sbjct: 203 ELDGGGGDMHVAMPYSMIEPIREVLDAGVQSDVDDVDERWISALQQDILEARVPLNAAVV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+K +L+ + LK G VIP ++ANG I+ ++G+ N ++I D+I
Sbjct: 263 RQKISLRSLSRLKPGDVIPVELP--ETITVTANGVPIFIAKVGQCNGNLALKIVDKIKR 319
>gi|51598538|ref|YP_072726.1| flagellar motor switch protein FliM [Borrelia garinii PBi]
gi|219684519|ref|ZP_03539462.1| flagellar motor switch protein FliM [Borrelia garinii PBr]
gi|219685746|ref|ZP_03540557.1| flagellar motor switch protein FliM [Borrelia garinii Far04]
gi|51573109|gb|AAU07134.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219671881|gb|EED28935.1| flagellar motor switch protein FliM [Borrelia garinii PBr]
gi|219672685|gb|EED29713.1| flagellar motor switch protein FliM [Borrelia garinii Far04]
Length = 352
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I A +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E + + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMIILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K + + I K ++++++L G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDALREKLENTAMPLIAEIGEVKLKVREILSLDKGDV 294
Query: 265 IPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKNF 314
+ L KE + C +G +G +++IT++I + LK
Sbjct: 295 LNLESSLINKDLTLKVGTKEKFKCRMGLMGNKVSVQITEKIGDIKGFDLLKEL 347
>gi|330953758|gb|EGH54018.1| flagellar motor switch protein FliM [Pseudomonas syringae Cit 7]
Length = 322
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 98/306 (32%), Gaps = 17/306 (5%)
Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
N+ P R+ + + ++ + D
Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFPRYTRISMFNLLRRSAD 78
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
++ Q KF +HS + A + LV L++N G
Sbjct: 79 VAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-H 137
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R + E ++ + + Q L + E + E +E
Sbjct: 138 AKIEGREFTPTELRVVRMVLDQAFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSE 195
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQL 238
V ++ ++ + +P + + + Q+ ++Q E ++ +
Sbjct: 196 AVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDV 255
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
NV + T I ++ L+D++ ++ G VIP +L ANG + +LG +
Sbjct: 256 NVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--GDSLVLRANGVPSFKVKLGSHKGKMAL 313
Query: 299 RITDRI 304
++ + I
Sbjct: 314 QVIEPI 319
>gi|268589967|ref|ZP_06124188.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131]
gi|291314684|gb|EFE55137.1| flagellar motor switch protein FliM [Providencia rettgeri DSM 1131]
Length = 335
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 37/307 (12%), Positives = 84/307 (27%), Gaps = 10/307 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
N P P R+ + + + + + DI+ +
Sbjct: 33 DNVRPYDPNTQRRVIRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIKI 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + LV ++NL G + +
Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRQEGKEF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ R + + I N N+ V T
Sbjct: 147 TNTEQRIINRMLKLALGAYRDAWKPIADIEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205
Query: 188 MTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ I N F + IP + + ++E + + + + +
Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLINPPMEQGHQENETWVTNLVTQVKRSELELVANF 265
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ++ L+ G VIP I++ +G + + + G Y +R+ IN
Sbjct: 266 VDIPMRISRLLQLQKGDVIPIEKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323
Query: 307 DQKSLKN 313
+L
Sbjct: 324 VLNTLDE 330
>gi|332298232|ref|YP_004440154.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
12168]
gi|332181335|gb|AEE17023.1| flagellar motor switch protein FliM [Treponema brennaborense DSM
12168]
Length = 344
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 97/285 (34%), Gaps = 8/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + + + ++ V + S + I S + +
Sbjct: 48 SKEQIRTVSIMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTLAVIN 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++++ L G + + R L+ +E+ + + I +I A +
Sbjct: 108 MDPLKGNAILEIDPAITFSMIDRLFGGTGQGAKV--QRDLTDIEQSVMEGIIVRILANMR 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P L + +E V + + + IP T+
Sbjct: 166 EAWTQVIDLRPRLGQIET--NPQFAQIVPPSEMVVLVTLETKVGEEEGMMNFCIPYLTIE 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + + K +++++ I ++DV+ L++G +
Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYLGVLKEKLSDVDMDVVAEIGSVSLPIRDVLALRVGDI 283
Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ R LS K+ + C+ G +GK +++ +I +
Sbjct: 284 VRLSNVRITDPITLSIGNKKKFLCQPGVIGKKMAVQVLSKITQGE 328
>gi|77457773|ref|YP_347278.1| flagellar motor switch protein FliM [Pseudomonas fluorescens Pf0-1]
gi|77381776|gb|ABA73289.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
Length = 322
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 38/277 (13%), Positives = 94/277 (33%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
E + E +E + ++ ++ + +P +
Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E ++ + ++V I + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDLDDQDERWVNALRQDVLDVDVPIGATVARRQLKLRDILHMQPGDVIPVEM 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
E I+ ANG + ++G N +++ + I
Sbjct: 287 PED--MIMRANGVPAFKVKMGSHKGNLALQVIEPIER 321
>gi|330876026|gb|EGH10175.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 322
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + R+ + + ++ + D++
Sbjct: 30 SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +HS + A + LV L++N G ++
Sbjct: 84 VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E ++ + + Q L + E + E +E V
Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPVMANIVGPSEAVVIS 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
++ ++ + +P + + + Q+ ++Q E ++ +NV +
Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLT 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
T I ++ L+D++ ++ G VIP +L ANG + +LG +++ +
Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SDTLVLRANGVPSFKVKLGSHKGKMALQVIEP 318
Query: 304 I 304
I
Sbjct: 319 I 319
>gi|167037657|ref|YP_001665235.1| flagellar motor switch protein FliM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040318|ref|YP_001663303.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
gi|256750752|ref|ZP_05491637.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914402|ref|ZP_07131718.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
gi|307724362|ref|YP_003904113.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
gi|320116072|ref|YP_004186231.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166854558|gb|ABY92967.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X514]
gi|166856491|gb|ABY94899.1| flagellar motor switch protein FliM [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256750335|gb|EEU63354.1| flagellar motor switch protein FliM [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889337|gb|EFK84483.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X561]
gi|307581423|gb|ADN54822.1| flagellar motor switch protein FliM [Thermoanaerobacter sp. X513]
gi|319929163|gb|ADV79848.1| flagellar motor switch protein FliM [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 332
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 40/284 (14%), Positives = 98/284 (34%), Gaps = 6/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L + V+++ S + +S +
Sbjct: 50 SKEQLRTLQMIFENLSRSLTSFLSGYLRTIVNVTVVSVDQLTYYEFSNSLNNPVFIAIID 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ F + +NN +L+ +LG + +L +R + +E L + + Q+ ++
Sbjct: 110 AAPLEGLFLLEFNNNTTYAILDRILGGMGK--GELLDRDYTEIEISLLTKIVKQMLSLFK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + +P+L + NE V +++ I +P TL
Sbjct: 168 EPWSNILDINPSLIRVET--NSQFAQIISPNETVALCTLSIKINETEGIMNFCMPHLTLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + + + K + + + ++ T+K+ + +IG +I
Sbjct: 226 PIVPKLTTKFWFSSMKKEEKVNPELIKSKISKTYIPLTAQLGSTTITVKEFLDFEIGDII 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K + + K + G Y++RIT+ I +
Sbjct: 286 MLDKHFKEPVDIIIDKKVKFRGIPGIKNNKYSVRITEVIYKGDE 329
>gi|308273526|emb|CBX30128.1| hypothetical protein N47_D29370 [uncultured Desulfobacterium sp.]
Length = 322
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 96/301 (31%), Gaps = 4/301 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIE-KISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ + + GK + + + FL + + L D+S
Sbjct: 24 TESDVPEIDGAIGLYDFGKKSSPGHLSLPGLGMINERFINFLNESLPGTIGLSTDVSVDE 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
S KF S + + + LV ++ + G + +L
Sbjct: 84 IDSIKFGDFCRSLPVPTSLNIFKMEPLKGFALLVFEGWLVFAFVDAMFGGKGVSHVKLEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + +E+K+ R + + L + + ++ + + + +
Sbjct: 144 RGFTAIEQKIVSRIVDIVLVDLQKAWAEIKDLK--MVYTRSEMDPQFAGIAKPTDMIIAT 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ I N + +P + + + +++ +K +L++N+
Sbjct: 202 KFALNIGNFTGGMTICLPYDVIEPIGEKLKENYRSEKFEADPVWKQHIKKKIQELDINLK 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ K T ++ + +K+ V+ + ++S + +G + IRI D+
Sbjct: 262 CTLGRIKITGREFLEMKVDDVLLTGQKVDDPIVVSVGDLNKFKGHVGSMNNKKAIRIADK 321
Query: 304 I 304
I
Sbjct: 322 I 322
>gi|119953077|ref|YP_945286.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135]
gi|119861848|gb|AAX17616.1| flagellar motor switch protein FliM [Borrelia turicatae 91E135]
Length = 352
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 100/293 (34%), Gaps = 9/293 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + SS + ++ + V + S + I S + +
Sbjct: 58 SKEQVRTVSSFHEAFARYTTTSLSALLRKMVHVHVASVDQLTYEEFIRSIPNPTTLAIIN 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + +++ L G +TI + +R L+ +E+ + + I +I A +
Sbjct: 118 MDPLKGSAIFEVDPTIAFAIVDRLFGGDGDTI-KDKSRDLTEIEQSVMESVIIRILANMR 176
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P + E V + + + I V +P T+
Sbjct: 177 EAWSQVVDLRPRFGHIEV--NPQFAQIVPPTEMVILVTLEVKIGKVEGLMNFCLPYITIE 234
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + +D K ++ + I K ++++++L G V
Sbjct: 235 PIVSKLSTRYWHSLIGVGTTSENLDILREKLENTDMLLVAEIGEVKLKVREILSLAKGDV 294
Query: 265 IPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS--LKNF 314
+ + IL K+ + C +G VG ++++T+++ + LK
Sbjct: 295 LNLENSPIDKDLILKVGTKQKFKCRMGLVGNKISVQVTEKVGEVEDFDLLKEL 347
>gi|291613061|ref|YP_003523218.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus
ES-1]
gi|291583173|gb|ADE10831.1| flagellar motor switch protein FliM [Sideroxydans lithotrophicus
ES-1]
Length = 333
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 11/302 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ R+ + + + + +IS +
Sbjct: 31 EGGVRAYNMATQERIVRG------RMPTMEIINERFARLFRISLYNFIHRSSEISVGPVR 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KFS I + + + + NLV ++++L G ++ R
Sbjct: 85 VMKFSEFIRNLPVPANLNLVQVKPLRGSALFIFDPNLVFMVVDSLFGGDGRFHTRVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E ++ ++ + + + T Q+ E + NE V
Sbjct: 145 FTQTEHRIIQKLLDVVFQTYGKSWETVQKLD--FEFIRSEVNPQFANIATPNEVVVVTTF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ V S + +P + + S Q + + +R+ V +
Sbjct: 203 EVEFTGVGGSIHICMPYAMIEPIREMLYSTMQGDHVIADKRWLHMLSRQIQLAEVELTAV 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ T ++ V+ ++ G +IP + + + + C+ G Y +++ +
Sbjct: 263 LGHATTNVEHVLKMRAGDIIPLE--VEDTIQVLVDTVPVMECKYGSSNGQYALKVEKMLA 320
Query: 306 FD 307
+
Sbjct: 321 TE 322
>gi|237799245|ref|ZP_04587706.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022100|gb|EGI02157.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 322
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 41/297 (13%), Positives = 96/297 (32%), Gaps = 12/297 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + ++ + D++ Q
Sbjct: 34 SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVM 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +HS + A + LV L++N G ++ R +
Sbjct: 88 KFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q L + E + E +E V ++
Sbjct: 147 PTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P + + + Q+ ++Q E ++ +NV + T I
Sbjct: 205 ELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIA 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ L+D++ ++ G VIP ++ ANG + +LG +++ + I
Sbjct: 265 QRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 319
>gi|212709505|ref|ZP_03317633.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM
30120]
gi|212687843|gb|EEB47371.1| hypothetical protein PROVALCAL_00547 [Providencia alcalifaciens DSM
30120]
Length = 335
Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats.
Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 10/307 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
N P P R+ + + + + + DI+ + +
Sbjct: 33 DNVRPYDPNTQRRVFRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGAIKI 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + LV ++NL G + +
Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ R + + I N N+ V T
Sbjct: 147 TNTEQRIINRMLKLALGAYRDAWKPIADVEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ I N F + IP + + + ++E + + + + + +
Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLTNPPMEQGHQENEAWVTNLVTQVKRSELELIANL 265
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ++ L+ G V+P I++ +G + + + G Y +R+ IN
Sbjct: 266 VDIPLRISRLLQLQKGDVLPIEKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323
Query: 307 DQKSLKN 313
+L
Sbjct: 324 VLNTLDE 330
>gi|150021178|ref|YP_001306532.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
BI429]
gi|149793699|gb|ABR31147.1| flagellar motor switch protein FliM [Thermosipho melanesiensis
BI429]
Length = 329
Score = 235 bits (600), Expect = 5e-60, Method: Composition-based stats.
Identities = 50/292 (17%), Positives = 98/292 (33%), Gaps = 7/292 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K E+ L + + L F ++ V ++ + I S K
Sbjct: 40 DFLRPRKFSKEQERTLQMLHENFARTLSTYFSGRLRSFVAVNLVGIDQMTYDEFIKSIKN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ S + + + + +LE LLG NR + E ++ ++ +
Sbjct: 100 PSFITIFSAKEFVGSAVLDIDLAIFYGILEILLGGPGSMTE--INRPPTETEIEVMRKEV 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
I L+Q +T P +E + NE V I + I NV +
Sbjct: 158 VNILTNLSQAWTTVYSFVPVIEAIET--NPQFVQVVALNEMVLVITFFVNIGNVEGYVNI 215
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P + + K + SE+ + + V + I TL D+
Sbjct: 216 CWPSSLIEPIGEKLTTQSWFKTKQKVVSEEDMKALKENLARTIVELSATIGETNLTLWDI 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ L++G VI ++ + NGK+ + G Y ++I + + ++
Sbjct: 276 LNLEVGDVIRLNTFKEDPLKIKLNGKDKFLGAPGVFKGKYAVKILEVFDEEE 327
>gi|225375335|ref|ZP_03752556.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
16841]
gi|225212824|gb|EEG95178.1| hypothetical protein ROSEINA2194_00960 [Roseburia inulinivorans DSM
16841]
Length = 326
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 9/312 (2%)
Query: 2 RGQSIHKNTSPLHPILLA--RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
G+ ++ + T K + + Y + L + V
Sbjct: 19 NGELDAEDMKEKDEKQVKNYDFTRPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKTVQ 78
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + ++ +S ++ + ++S S + I ++NL +++ +LG +
Sbjct: 79 VEVMNSEAVTYSEFTNALSNPVLLGLVNVSPLSGSIIIELADNLGYAIVDRMLGGLGTPL 138
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ R S +E + +R ++L + S+ E SP LE + E
Sbjct: 139 DKP--RDFSEIELLILERIYNVCVSLLPEPWSSVCEISPRLERIET--NSQFAQIISPTE 194
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTY 236
+ + +++ I +V + +P TL N E+ + D
Sbjct: 195 MIALVTLHIKIGDVEGLMNICLPYLTLESVMDKLNTKFWYSNLQEHDDKQYTDAIEALIS 254
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + ++ D V L++G +I + + ++ G VG NY
Sbjct: 255 KAKIPVKAVLGNSTISVDDFVNLQVGDIIRLDSGVNQDLNIFVGNIKKFTALPGAVGDNY 314
Query: 297 TIRITDRINFDQ 308
+R+T + +Q
Sbjct: 315 AVRVTSVVREEQ 326
>gi|71737319|ref|YP_275531.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257484906|ref|ZP_05638947.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289629023|ref|ZP_06461977.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651613|ref|ZP_06482956.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298487824|ref|ZP_07005864.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71557872|gb|AAZ37083.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157549|gb|EFH98629.1| Flagellar motor switch protein fliM [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325124|gb|EFW81193.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329383|gb|EFW85376.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866455|gb|EGH01164.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330889050|gb|EGH21711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. mori
str. 301020]
gi|330986499|gb|EGH84602.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011074|gb|EGH91130.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 322
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 12/301 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + R+ + + ++ + D++
Sbjct: 30 SEPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVGG 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q KF +HS + A + LV L++N G ++
Sbjct: 84 VQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E ++ + + Q L + E + E +E V
Sbjct: 143 REFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVIS 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
++ ++ + +P + + + Q+ ++Q E I+ +NV +
Sbjct: 201 TFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVPLT 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
T I ++ L+D++ ++ G VIP ++ ANG + +LG +++ +
Sbjct: 261 TTIAQRQLPLRDILHMRPGDVIPVEL--SESLVMRANGVPSFKVKLGSHKGKMALQVIEP 318
Query: 304 I 304
I
Sbjct: 319 I 319
>gi|189911092|ref|YP_001962647.1| flagellar motor switch protein FliM [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775768|gb|ABZ94069.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
Length = 341
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 17/314 (5%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
K + K + + ++ + ++ V + S
Sbjct: 32 EQKKVKIYDFKRPDKF------SKNQIRTLQMMHEIFARLATTGLSAQLRALVVVHVASV 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ I S + ++ + + ++ T+++ L G E+ NR
Sbjct: 86 DQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGESSKV--NR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
LS +E + + I +I L + ST + P L + + N+ V I
Sbjct: 144 ELSDIELSVMEGIIVRILGNLRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLIT 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ + V L IP T+ + + + ++ + Q+ + +
Sbjct: 202 LETKVGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPL 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + +L D++ L +G VI KT ++ + + GRVG I+I
Sbjct: 262 ISEVGSVDISLNDLMNLHVGDVIKLENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIG 321
Query: 302 DRINFDQKSLKNFL 315
D I + L
Sbjct: 322 DSI---EDIPDELL 332
>gi|83589656|ref|YP_429665.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
39073]
gi|83572570|gb|ABC19122.1| flagellar motor switch protein FliM [Moorella thermoacetica ATCC
39073]
Length = 323
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 45/281 (16%), Positives = 98/281 (34%), Gaps = 8/281 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + Y + + + + + S + + I S + + S
Sbjct: 47 SKEHLRTLYMIHENYGRLVANFLSAYLRASIQVKIVSVEQMTYEDFILSLPTPTLMNVFS 106
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N + +++ L G E + + NR L+ +E + +R +++ L+
Sbjct: 107 MEPLKGSAVLETNMNFIFPIIDLLFGGRGEMVAR--NRELTEIELHVLRRLNSRMLEQLS 164
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S Q +P LE+ + NE V I M T+ L +P L
Sbjct: 165 YSWSDIQNITPKLENMET--NPQFTQAISPNETVAVITMGTTVGKYEGLLNLCLPYMLLE 222
Query: 208 KTTLISLSSQ----NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+S D + ++ V + I + ++D + L++G
Sbjct: 223 PVISRLSASHWFATGGEREARPDYRTVVEKILAEVPVELIAYIGRTRLPVRDFIQLQVGD 282
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
VI L +G + + G V K +++T+ +
Sbjct: 283 VITLEKTVGEDLELYVDGHHKFQVQPGIVNKKIAVQVTEVV 323
>gi|226944505|ref|YP_002799578.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
gi|226719432|gb|ACO78603.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
Length = 350
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 44/330 (13%), Positives = 109/330 (33%), Gaps = 19/330 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARL-----TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMD 55
++G S +++SP P R+ + + + + ++ +
Sbjct: 16 LKGVSGEEDSSPSEPADTQRIRPYNPATQHRVIRERLHALDIINERFARYFRMSLFNLIR 75
Query: 56 LDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS 115
DI+ S + +S + + ++ + +LV +++NL G
Sbjct: 76 RSADITVDSVRYQSYSDFARNVPVPTNINLLAMKPLRGTALVVFPPSLVFMVVDNLFGGD 135
Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
+ + R + E+++ +R + + ++ K
Sbjct: 136 GRFLTKSEGREFTHTEQRIIRRLLGLALEAYQSAWKSVYPLE--IDYLRSEMQAKFANIT 193
Query: 176 -LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFAR 233
NE V ++ + N+AS F +++P + + N S ++ A
Sbjct: 194 SSPNEIVINSTFHLEVGNLASDFNIVMPYLMIEPLRSLLNGPLNDSHPDEERQWGKRMAS 253
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q + + + V+ LK+G V+P + +G + CE G
Sbjct: 254 EIKQSQIELIADFAGIDLCIGQVMALKVGDVLPIELP--ETVVARVDGVPVMRCEYGSRN 311
Query: 294 KNYTIRITDRIN--------FDQKSLKNFL 315
+++ + I+ ++ +K L
Sbjct: 312 GQRALQVKELIDHSSANAGATTERFIKGSL 341
>gi|326796458|ref|YP_004314278.1| flagellar motor switch protein FliM [Marinomonas mediterranea
MMB-1]
gi|326547222|gb|ADZ92442.1| flagellar motor switch protein FliM [Marinomonas mediterranea
MMB-1]
Length = 329
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 97/285 (34%), Gaps = 7/285 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D+S Q KF +H+ +
Sbjct: 48 RMPTLEMINERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRP 107
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S LV L++N G ++ R + E ++ + + Q+ L +
Sbjct: 108 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAW 166
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + LE +E V ++ ++ + +P +
Sbjct: 167 APVLKLE--LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 224
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ + + + + ++VN+ I KK TL DV+ K G VIP
Sbjct: 225 ELLDAGVQSDVDEKDDRWGKSLEQDVQDVDVNLHVNIASKKITLGDVLKFKTGDVIPIEM 284
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD-QKSLKN 313
+ AN + +LG Y++++ + I ++SLKN
Sbjct: 285 P--EYVTVRANNVPTFRGKLGSSNGKYSVQMKESIKAQMKESLKN 327
>gi|330808225|ref|YP_004352687.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376333|gb|AEA67683.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 322
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFVDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
E + E +E + ++ ++ + +P +
Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E I+ + ++V I + ++ L+D++ ++ G +IP
Sbjct: 227 EMLDAGFQSDLDDQDERWINALRQDVLDVDVPIGATVARRQLRLRDILHMQPGDIIPVEM 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
E ++ ANG + ++G N +++ + I
Sbjct: 287 PED--MVMRANGVPAFKVKMGSHKGNLALQVIEPIER 321
>gi|312962266|ref|ZP_07776758.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
gi|311283603|gb|EFQ62192.1| flagellar motor switch protein FliM [Pseudomonas fluorescens WH6]
Length = 322
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 95/299 (31%), Gaps = 12/299 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ R+ + + ++ + D++ Q
Sbjct: 34 SVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQGM 87
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +HS + + LV L++N G ++ R +
Sbjct: 88 KFGEYVHSLYVPTSLNLVKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 146
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q L + E + E +E + ++
Sbjct: 147 PTELRVVRMVLEQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHI 204
Query: 189 TIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P + + + Q+ ++Q E + ++V + +
Sbjct: 205 ELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVA 264
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++ L+D++ ++ G VIP I+ ANG + +LG N +++ + IN
Sbjct: 265 RRQLRLRDILHMQPGDVIPVELP--QEMIMRANGVPSFKVKLGSHKGNLALQVIEPINR 321
>gi|229591843|ref|YP_002873962.1| flagellar motor switch protein FliM [Pseudomonas fluorescens SBW25]
gi|229363709|emb|CAY51095.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
Length = 322
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 36/277 (12%), Positives = 91/277 (32%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNMLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLEQAFIDLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
E + E +E + ++ ++ + +P +
Sbjct: 169 QAIMEVN--FEYINSEVNPAMANIVGPSEAIVVSTFHIELDGGGGDLHVTMPYSMIEPVR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E + ++V + + ++ L+D++ ++ G +IP
Sbjct: 227 EMLDAGFQSDLDDQDERWVKALREDLLDVDVPLSATVARRQLRLRDILHMQPGDIIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
I+ ANG + +LG N +++ + I
Sbjct: 287 P--EEMIMRANGVPSFKVKLGSHKGNLALQVVESITR 321
>gi|303248092|ref|ZP_07334357.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
JJ]
gi|302490491|gb|EFL50399.1| flagellar motor switch protein FliM [Desulfovibrio fructosovorans
JJ]
Length = 326
Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 89/297 (29%), Gaps = 10/297 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + M D++ S
Sbjct: 32 DSGVVVFDLSNQDRIIRG------RMPVLEIINDRFARLASNAMANAMRKRADVNPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S + L N + + LV ++E+ G + ++ R
Sbjct: 86 MSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGSQP-KIEGRD 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + R + + + E ++E + ++ V +
Sbjct: 145 FTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPPSDVVIVVTF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +EN S ++ +P T+ S Q + I F + + V + R
Sbjct: 203 EVELENAIGSLIVCLPYATIEPIRTKLYASFQTERLEVDHAWIARFKERLMETPVEMLVR 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + +++LK G +I + G + G V N +I
Sbjct: 263 FGRSQVTGRQLLSLKPGDIIMLDNDVDALLEAEVQGVRKFRGIPGLVKSNKAFQIVK 319
>gi|192360300|ref|YP_001982201.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
gi|190686465|gb|ACE84143.1| flagellar motor switch protein FliM [Cellvibrio japonicus Ueda107]
Length = 339
Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 44/298 (14%), Positives = 97/298 (32%), Gaps = 12/298 (4%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
R+ + + ++ + D+S Q K
Sbjct: 33 VRAYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVSVGGVQIQK 86
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
F +H+ + I LV L++N G ++ R +
Sbjct: 87 FGEYVHTLYVPTSLNMVKFRPLRGTALIILDARLVFKLVDNFFGGDGR-HAKIEGREFTP 145
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E ++ + + Q L + + E + +E V ++
Sbjct: 146 TELRVVQMVLNQAFVDLGEAWKAVFPV--SFEYVHSEVNPSLANIVSPSEVVVVSTFHIE 203
Query: 190 IENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
++ + +P + + + Q+ SE Q E + V+++ +
Sbjct: 204 LDGGGGEMHITVPYSMIEPIREVLDAGLQSDSEEQDERWVRALREDVLAAKVDLECDVVR 263
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ TL+D+V LK G +IP +++ANG ++ +LG+ N ++I + I+
Sbjct: 264 RDITLRDIVDLKEGDIIPVEFP--DYHVVTANGVPMFRTQLGQHNDNLALKILEFIDR 319
>gi|229918638|ref|YP_002887284.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
gi|229470067|gb|ACQ71839.1| flagellar motor switch protein FliM [Exiguobacterium sp. AT1b]
Length = 329
Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 106/309 (34%), Gaps = 14/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q K R K + + + + + L F ++ V S
Sbjct: 30 QEEEKKVRQYDFKRAVRF------SKDQIRSLTRIHEHFTRMLTTFFSAQLRTYVQFSVN 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + + IHS + + + F I + N+ +L+ LLG + ++
Sbjct: 84 SVEQLPYDEFIHSIPSMTMINLIEAPPLNGRFIIEVNPNISYAMLDRLLGGPGVEMDKIE 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
+ + +E ++ + + + + E + + NE V
Sbjct: 144 S--FTEIEMRILTQLYKRAFSTYGDAWESIAEIKAEMSAVEV--NPQFLQLVSPNETVVL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKTYQLN 239
I++ +TI V+ + + +P T+ S + N S+ +P +
Sbjct: 200 ISIGVTIGEVSGTINVCLPFVTIEPVLSKLSSHYWMQEANRRNASQSSKEPLKAQLMNST 259
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + T D++ L++G + K + +++ ++G GK ++
Sbjct: 260 VEVVSLLGETTITFGDLLHLEVGDCLALDQLAKEPLSVMVGENKVFKGQVGVSGKRMAVQ 319
Query: 300 ITDRINFDQ 308
+ R+ ++
Sbjct: 320 VLHRVKEEE 328
>gi|300722647|ref|YP_003711937.1| flagellar motor switch and energizing protein [Xenorhabdus
nematophila ATCC 19061]
gi|297629154|emb|CBJ89750.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus nematophila ATCC 19061]
Length = 335
Score = 234 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 36/303 (11%), Positives = 84/303 (27%), Gaps = 10/303 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S P P R+ + + + + + DI+ +
Sbjct: 30 SGESEVRPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L +LV ++NL G ++
Sbjct: 84 IKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFEPSLVYIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + + N N+ V T
Sbjct: 144 REFTYTEQRIINRMLKLALDAYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIVVTT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNID 243
+ I + F + IP + + ++ + ++ + +
Sbjct: 203 PFQVEIGALTGEFNICIPFAMIEPLRERLTNPPVENLRQEDGQWRKSLVKQVQHSELELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ LK G V+P I+ +G + + G + Y +R+
Sbjct: 263 ANFVDIPLRLSKILELKAGDVLPIEKP--ERLIVHVDGVPVLISQYGTLHGQYALRVEHL 320
Query: 304 INF 306
IN
Sbjct: 321 INP 323
>gi|238924157|ref|YP_002937673.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
33656]
gi|238875832|gb|ACR75539.1| flagellar motor switch protein FliM [Eubacterium rectale ATCC
33656]
gi|291524890|emb|CBK90477.1| flagellar motor switch protein FliM [Eubacterium rectale DSM 17629]
Length = 326
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 13/308 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + ++ K + + Y + L + V +
Sbjct: 29 ENSEQTVKDYDFARPSKF------SKEHLRTLEIIFEHYGRLLTTNLPVYLRKSVQVEVM 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ ++ +S ++ + + + N + ++ L +++ +LG +++ +
Sbjct: 83 NSEAVTYSEFTNALSNPVLLGIVNFAPLHGNIIVEMASGLGYAIVDRMLGGRGDSLDKT- 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R S +E + +R + +L + + SP+LE + +E +
Sbjct: 142 -REFSEIELLIIERILVICINLLQEPWQNVLDISPHLERIET--NSQYAQIISPSEVIAI 198
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I MN+ I +V + +P TL N + + + + +
Sbjct: 199 ITMNIKIGDVEGLMNICLPYITLESVIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQI 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + ++KD TL G VI + + ++ G G Y +RI
Sbjct: 259 PVKAVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRI 318
Query: 301 TDRINFDQ 308
T + +Q
Sbjct: 319 TSVVREEQ 326
>gi|222147563|ref|YP_002548520.1| flagellar motor switch protein [Agrobacterium vitis S4]
gi|221734551|gb|ACM35514.1| flagellar motor switch protein [Agrobacterium vitis S4]
Length = 319
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 106/305 (34%), Positives = 169/305 (55%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
P+ LLARLTG LGD K++EK+ G LY +FLP +F + +L +++ Y +SG
Sbjct: 14 KPMDHALLARLTGGLGDMKSVEKLCQDFGQLYSEFLPDVFHSETNLTIEVGYLGFKSGLM 73
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+I S +NFV + SL +WS NF + C N VITL+E LLG E I + R LS +
Sbjct: 74 RDLIASLGDNFVLANTSLRNWSQNFVMACGNGFVITLMETLLGGMQEFIGEPIKRPLSNI 133
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E LA +I+ VL ++ T P E ++ + + EF ++M++ +
Sbjct: 134 ELDLAVMVFERIANVLRSGVNATGGFEPIFERPHNWENRLRQDGEQIEEFGALVHMSIKL 193
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ S F LIIPQ+TLLKT + + S+N+ ++ + A + + V ++ RI+L+
Sbjct: 194 GKITSDFALIIPQKTLLKTNVTAPKSKNQVSKARKEWAEQLAEQVRKSQVTLEGRISLQS 253
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+L V L G VIPFL + +SANG+++Y+CE GR G +YT+R+ + D +
Sbjct: 254 LSLLTVSKLAAGDVIPFLEKGDVTVDVSANGRDLYTCEFGRAGDHYTVRVKSMHSTDSEL 313
Query: 311 LKNFL 315
L++ +
Sbjct: 314 LRHLM 318
>gi|291529031|emb|CBK94617.1| flagellar motor switch protein FliM [Eubacterium rectale M104/1]
Length = 326
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 103/308 (33%), Gaps = 13/308 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + ++ K + + Y + L + V +
Sbjct: 29 ENSEQTVKDYDFARPSKF------SKEHLRTLEIIFEHYGRLLTTNLPVYLRKSVQVEVM 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ ++ +S ++ + + + N + ++ L +++ +LG +++ +
Sbjct: 83 NSEAVTYSEFTNALSNPVLLGIVNFAPLQGNIIVEMASGLGYAIVDRMLGGRGDSLDKT- 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R S +E + +R + +L + + SP+LE + +E +
Sbjct: 142 -REFSEIELLIIERILVICINLLQEPWQNVLDISPHLERIET--NSQYAQIISPSEVIAI 198
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I MN+ I +V + +P TL N + + + + +
Sbjct: 199 ITMNIKIGDVEGLMNICLPYITLESVIDKLNTRYWYSNIQNHDETNYRNAIESLIQKSQI 258
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + ++KD TL G VI + + ++ G G Y +RI
Sbjct: 259 PVKAVLGKSLISVKDFSTLVPGDVIRLDTNVDDELDIYVGNIKKFTALPGSSGDKYAVRI 318
Query: 301 TDRINFDQ 308
T + +Q
Sbjct: 319 TSVVREEQ 326
>gi|220932512|ref|YP_002509420.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
gi|219993822|gb|ACL70425.1| flagellar motor switch protein FliM [Halothermothrix orenii H 168]
Length = 334
Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 7/289 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + + + L ++ VD S + + I S E
Sbjct: 40 DFRRPDKLSKEQMRTLEMIHENFARILTTTLSTQLRSRVDFEVASIEQLTYEEFIRSLPE 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + + ++ F + ++ +++ L G + ++ R+ + +EK + ++ I
Sbjct: 100 PTIIGISEMEPFNGQFIFEINPDIGFAIIDRLFGGMGNPLDRV--RTYTDIEKVVLRKVI 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ + L + P L + SN+ I M+ I N +
Sbjct: 158 SWFLSGLPEAWENIIRVKPRLR--EIESNPQFTQVVPSNDMTILITMSAKIANSEGLVNV 215
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
IP + N E ++ I+ +K + + + + + T+ D+
Sbjct: 216 CIPYIMIEPIVPQLNAQQWFSNTREERTAQHIEAIKKKLKRAPLEVIAEVGKTQLTVTDL 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ L+ G VI + + + + G K+ ++ITD I+
Sbjct: 276 LYLQPGDVIRLDKKAEEKVDIRIGKNVKFQGVAGVSNKHMAVKITDVIS 324
>gi|326204614|ref|ZP_08194470.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
2782]
gi|325985181|gb|EGD46021.1| flagellar motor switch protein FliM [Clostridium papyrosolvens DSM
2782]
Length = 328
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 38/281 (13%), Positives = 95/281 (33%), Gaps = 7/281 (2%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
++ + Y + + + V + S + ++S +S + +
Sbjct: 52 KRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPIILGIVDFTPL 111
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ + ++ L++ +LG ++ ++ RS + +E + +R I QI ++ +
Sbjct: 112 NGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWE 169
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
+ P LE + NE V I +N+ + V + IP T+
Sbjct: 170 SIIAIKPRLEKIET--NAQFAQIIHPNEMVALITLNVVVGEVKGMINICIPHMTVEPIMP 227
Query: 212 ISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
N + E K V + + ++ + + L+ G V+P
Sbjct: 228 KLSTKLWFTNVENEKIEHNKSDIEFKIEHTYVPVRAVLGKTSISISEFLDLQSGDVLPLD 287
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ ++ + G ++IT+ + ++
Sbjct: 288 TNVNGDLEILVGDLPKFNAKPGVKKNKVAVKITEVLRREED 328
>gi|168187522|ref|ZP_02622157.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
Eklund]
gi|169294580|gb|EDS76713.1| flagellar motor switch protein FliM [Clostridium botulinum C str.
Eklund]
Length = 331
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 101/285 (35%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + ++ +V ++ + Q + IHS + +
Sbjct: 48 SKDHIRTLELIHDNFARIISNYLTAQVRTNVKVNIETVQQITYEEFIHSVPNPTILTVFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ S + + +++ LLG S + R L+ ++K + K+ + L
Sbjct: 108 MPPLSGSILFETNPQFAYQIIDVLLGGSGTGQYKT--RELTDIDKNIIKQINNGLITNLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
E P +E N NE V I ++ + ++ + IP ++
Sbjct: 166 LAWEDVMEVEPEIEGLET--NPALNQTLAPNEPVALITFSVEMGGNSTFINICIPYLSIE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + + E + ++ + + + + K +++ ++L IG V
Sbjct: 224 KVLDKLVVQYWFRENNVESLEGSKEKLKKRMKVVELPMSVVLGSTKLDVREFLSLCIGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + + + + G VGKN ++I D I+ D +
Sbjct: 284 ITLDALTSSPVKVMVEDEPYLLAKPGIVGKNKGVQILDIIDKDVE 328
>gi|288962686|ref|YP_003452980.1| flagellar motor switch protein [Azospirillum sp. B510]
gi|288914952|dbj|BAI76436.1| flagellar motor switch protein [Azospirillum sp. B510]
Length = 374
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 34/302 (11%), Positives = 105/302 (34%), Gaps = 3/302 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ RL K + + + L ++ +V+ S + + +++
Sbjct: 74 SAIQRLVSSTTVNKDRLPMLDVVFDRMVRMLNTSLRQFASTNVEASLSKIEWLRYTDFQD 133
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ + + A W + + + L+ +++ LLG ++ R+ +++E+K+
Sbjct: 134 AIELPALIGVARAEPWDNQMLVTIDSALIYCMMDVLLGGRRSRPGRIDGRAYTSIERKMT 193
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+R + + L Q + + + T + + + + + +E
Sbjct: 194 ERMMKVVLQDLGQSFDPLAQVDFVFDRLEV--NPQFATITRATNAIIRVRIAVEVERRTG 251
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
++IP TL + + + + + + + K L
Sbjct: 252 HIDIVIPYATLEPIRGKLVQMFMGEKFGHDTVWESHLKNELMRSKLELVAVLAETKVPLG 311
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+V+ + GQ + + ++ + +++ +G+ N ++I ++ Q+ +
Sbjct: 312 EVLAWQKGQSLKLRISPDSTVMVFSKTIPLFAGHMGQRNDNIAVKIDTDLDTKQELIDGL 371
Query: 315 LH 316
L
Sbjct: 372 LS 373
>gi|291538507|emb|CBL11618.1| flagellar motor switch protein FliM [Roseburia intestinalis XB6B4]
Length = 326
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 7/292 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + Y + L + +V + + ++ +S ++
Sbjct: 39 DFARPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKNVQVEVMNSEAVTYSEFSNALSN 98
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + S + + I + NL +++ +LG + + R S +E + +R
Sbjct: 99 PVLLGIVNASPLNGSIVIEMAQNLGYAVVDRMLGGKGVPLDKP--RDFSEIELLIIERIF 156
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+L + E P LE + E + + +N+ I +V +
Sbjct: 157 NVAVDLLVEPWENVCELEPRLERIET--NSQFAQIISPTEMIALVTLNVKIGDVEGLLNV 214
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P TL + E + + + + I + ++ D
Sbjct: 215 CLPYLTLESIMDKLNTKYWYSSLQEKDEQQYTETIEALISKAPMPIKAVLGNSSISVNDF 274
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ L++G +I + + + ++ G G +Y +RIT I +Q
Sbjct: 275 LGLQVGDIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326
>gi|261344127|ref|ZP_05971771.1| flagellar motor switch protein FliM [Providencia rustigianii DSM
4541]
gi|282567719|gb|EFB73254.1| flagellar motor switch protein FliM [Providencia rustigianii DSM
4541]
Length = 335
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 10/307 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
N P +P R+ + + + + + DI+ + +
Sbjct: 33 DNVRPYNPNTQRRVFRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGAIKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + LV ++NL G + +
Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ R + + I N N+ V T
Sbjct: 147 TNTEQRIINRMLKLALNAYRDAWRPIADVEVEYVRSE-IQVKFTNITTSPNDIVVTTPFL 205
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRI 246
+ I N F + IP + ++ + ++E + + + + + +
Sbjct: 206 VEIGNTVGEFSICIPIAMIEPLRERLINPPTEQGHQENEAWVTNLVTQVKRSELELVANL 265
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ++ L+ G V+P I++ +G + + + G Y +R+ IN
Sbjct: 266 VEIPLRISSLLQLQKGDVLPIDKP--DRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINP 323
Query: 307 DQKSLKN 313
+L
Sbjct: 324 VLNTLDE 330
>gi|302037615|ref|YP_003797937.1| flagellar motor switch protein FliM [Candidatus Nitrospira
defluvii]
gi|300605679|emb|CBK42012.1| Flagellar motor switch protein FliM [Candidatus Nitrospira
defluvii]
Length = 323
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 86/276 (31%), Gaps = 3/276 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + + + ++ S Q KF I F+ ++
Sbjct: 50 RMPTMEMINDRFTRQQSISWSAVLREKIEFSVLGTQIMKFGDFIQKVPVPSSFNLFAMEP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
N LV +++ G +T + R +T++ +L K+ + Q A L +
Sbjct: 110 MRGNGLFVMDAMLVYLIVDFFFGGKVQTHVKPEGREFTTIQLRLIKKLVQQALADLEKAW 169
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + ++E V + + + + +++ + P L
Sbjct: 170 QAVMPVK--IGYLRSESNPQFAMVVTTSEIVVVVTLQVHLGDISREMFIAYPYSMLEPIK 227
Query: 211 LISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
S + Q F + +V + ++ + ++D++ G V+
Sbjct: 228 EKLYSGLFADNVEQDSSWGSRFKDSLQECDVALTVQLGTARINVQDLLNFNPGDVLMLDQ 287
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ G + + G N+ R+T +
Sbjct: 288 HPGDPMLCLVEGDPKFQGQPGIFKGNHACRVTKILG 323
>gi|172057877|ref|YP_001814337.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
255-15]
gi|171990398|gb|ACB61320.1| flagellar motor switch protein FliM [Exiguobacterium sibiricum
255-15]
Length = 327
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 108/311 (34%), Gaps = 14/311 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+R Q + R K + + + + + L F ++ V
Sbjct: 27 IRSQEEERRVKVYDFKRALRF------SKDQMRNLTRIHEQFARVLTTHFSAQLRTYVQF 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + + IHS + + +L + N+ +L+ LLG E +
Sbjct: 81 TVNTVEQLPYDEFIHSIPNMTLINLVNLHPLDGRVIFEVNPNIAYAMLDRLLGGPGEGMN 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ N L+ +E ++ + + + E E + NE
Sbjct: 141 KIEN--LTEIETRILTQLFKRAFVQYGAAWESIAEIEA--EYDDLEINPQFLQLVSPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLS----SQNKSENQSEDLIDPFARKTY 236
V +++ +T+ V+ + + +P TL S Q K ++ + +
Sbjct: 197 VILVSIYVTVGEVSGTLNVCLPFVTLEPIIPKLSSHFWMQQEKRKSADNQESEHMQTQLM 256
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
V++ + + + +++ L++G + R L + ++++ G GK+
Sbjct: 257 GSIVDLKAVLGQTELSFGELLHLEVGDCLSLQTRTSDPVELFVDDRKMFKARPGLNGKHL 316
Query: 297 TIRITDRINFD 307
+++ RI +
Sbjct: 317 ALQVLQRIEEE 327
>gi|116328061|ref|YP_797781.1| flagellar motor switch protein FliM [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331486|ref|YP_801204.1| flagellar motor switch protein FliM [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116120805|gb|ABJ78848.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116125175|gb|ABJ76446.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 341
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 46/315 (14%), Positives = 103/315 (32%), Gaps = 17/315 (5%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S K + K + + + + ++ V + S
Sbjct: 31 SEQKKVKIYDFKRPDKF------SKDQIRTLQMMHETFARLATTGLSAQLRALVSVHVAS 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ I S + ++ + + ++ T+++ L G E +
Sbjct: 85 VDQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGEQAK--IS 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R LS +E + + I +I + + ST + P L + + N+ V I
Sbjct: 143 RELSEIEMSVMEGIIVRILGNMRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLI 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVN 241
+ I V L IP T+ + + + ++ + Q+ +
Sbjct: 201 TLETKIGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIP 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + ++ D + L +G V+ + ++ I+ ++ + C GRVG I+I
Sbjct: 261 LIAEVGSVDVSINDFMNLSVGDVVKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQI 320
Query: 301 TDRINFDQKSLKNFL 315
DR+ + L
Sbjct: 321 GDRV---EDIPDELL 332
>gi|226327727|ref|ZP_03803245.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198]
gi|225203431|gb|EEG85785.1| hypothetical protein PROPEN_01600 [Proteus penneri ATCC 35198]
Length = 343
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 41/308 (13%), Positives = 88/308 (28%), Gaps = 10/308 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 40 EPDIQPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIK 93
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L NLV ++NL G + R
Sbjct: 94 IHPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGRE 153
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + + + + N N+ V T
Sbjct: 154 FTNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVRSE-MQVKFTNITSSPNDIVVTTPF 212
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
+ I ++ F + IP + ++ ++ + +D + + +
Sbjct: 213 QVEIGSMVGEFSICIPFAMIEPLRERLINPPIENVRQEDGVWLDSLVNQVQHSELELVAN 272
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L V+TLK G VIP I +G + + + G V Y +R+ IN
Sbjct: 273 FTDIPLRLSKVLTLKEGDVIPIDKP--ERLIAHVDGVPVLTSQYGTVNGQYALRVEHLIN 330
Query: 306 FDQKSLKN 313
+L
Sbjct: 331 PVLNALDE 338
>gi|296122747|ref|YP_003630525.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
3776]
gi|296015087|gb|ADG68326.1| flagellar motor switch protein FliM [Planctomyces limnophilus DSM
3776]
Length = 375
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 100/292 (34%), Gaps = 5/292 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + +L + + + V++ S +S + S + F+
Sbjct: 60 SKEQMRAFQALHEGFSREFGAALSGMLRAIVEVKLISVDQLTYSEFVFSLENPTCFNLLE 119
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + S +++ +++ LLG E+IP + +R L+ +E +L R + L
Sbjct: 120 SKGLEGHLILDLSPSIIFPIVDRLLGGGKESIPSIPSRPLTEIELQLVSRITLLVINGLE 179
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
L+ + NE + ++ +T+ V L IP T+
Sbjct: 180 NAWHNVCSL--GLKVTQIESNPQLVQIVPPNEVIVLVSFEITMGEVRGIMNLCIPFNTIE 237
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + + V + + + T +D+ L +G V
Sbjct: 238 PLSGKLSSDTWSAYQKKGLDPKQRVILEDGLSKAAVKMIVNLAHTRLTARDLAHLAVGDV 297
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
I H ++ + G ++ + G V IR+T + + L+ L
Sbjct: 298 IMTEHPKEDGLEVVVEGCPMFMAKPGAVKGKKAIRVTGMVAHSRDILREKLQ 349
>gi|220929456|ref|YP_002506365.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
H10]
gi|219999784|gb|ACL76385.1| flagellar motor switch protein FliM [Clostridium cellulolyticum
H10]
Length = 328
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 7/281 (2%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
++ + Y + + + V + S + ++S +S + +
Sbjct: 52 KRTLQFINENYARLVQSFLSGYLRSLVQVDVLSVDALQYSEFSNSLANPVILGIVDFTPL 111
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ + ++ L++ +LG ++ ++ RS + +E + +R I QI ++ +
Sbjct: 112 NGSVIFEMDPSIAYALIDRILGGRGASMERV--RSFTEIELAIIERIIIQILNLMREPWE 169
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
+ P LE + NE V I +N+ + V + IP T+
Sbjct: 170 SIIAIKPRLEKIET--NAQFAQIIHPNEMVALITLNVVVGEVKGLINICIPHITVEPIMP 227
Query: 212 ISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
N + E K V + + ++ + + L+ G V+P
Sbjct: 228 KLSTKLWFTNVENEKVEHNKSDIEFKIGHTYVPVRAVLGRTSISISEFLDLQGGDVLPLD 287
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ + + G I+IT+ + ++
Sbjct: 288 TNVNGDLEILVGDLPKFKAKPGVKKNKVAIKITEVLRREED 328
>gi|299131782|ref|ZP_07024977.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
gi|298591919|gb|EFI52119.1| flagellar motor switch protein FliM [Afipia sp. 1NLS2]
Length = 399
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 102/293 (34%), Gaps = 4/293 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F+
Sbjct: 86 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFADY 145
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V + W + ++L+ ++++ LLG +T ++ R +T+E
Sbjct: 146 LNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 205
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q + ++ + + + + +E+
Sbjct: 206 NLVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVRLRVDMED 263
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + A + + + +D +
Sbjct: 264 RGGNVELLLPYATIEPIRNVLLQMFMGEKFGRDPIWEGHLATEIAKAEMYVDAVLYEADM 323
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
LK +++LK+G +P R + + +GRVG IR++ +
Sbjct: 324 PLKQLMSLKVGDTLPLDIRPDAMVSVRCGDVTLSEGRMGRVGDRVAIRVSKPL 376
>gi|58039165|ref|YP_191129.1| flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
gi|58001579|gb|AAW60473.1| Flagellar motor switch protein FliM [Gluconobacter oxydans 621H]
Length = 343
Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 45/306 (14%), Positives = 103/306 (33%), Gaps = 10/306 (3%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
T + R+ G + + + + L + +V+ S S +
Sbjct: 30 TGAADSSGIERVVSTSGVSSERLPMLEVVFDRFTRILTTSLRNFTSDNVEASMDRLGSQR 89
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-------TIPQL 122
F + + +F+ W + + S++L+ ++++ LLG +
Sbjct: 90 FGDYLENVPGQAMFAVFKAEEWDNYGVVVLSSSLIYSIVDALLGGHVRGDSALTAPASRQ 149
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + +E+ L + + I L S + + E + + V
Sbjct: 150 TGRHHTAIERALIEPMVRIILDDLETSFSPLCAVNFHFERLEM--NSRFAMICRAGNGVV 207
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVN 241
T + +E +++P TL I L + + AR+ +Q ++
Sbjct: 208 TARFGIDMEGRGGDVDIVLPHATLEPVRDILLQQFMGEKFGHDGIWENHLARELWQTDLT 267
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+D + + LKD++ L G + + L +++ +GR ++I
Sbjct: 268 LDAVLEEQTMNLKDIMKLAPGDQLVLRRKPDASVSLRCGEHVLFTGRVGRKQGQVAVKIE 327
Query: 302 DRINFD 307
D +N
Sbjct: 328 DVLNQK 333
>gi|220905099|ref|YP_002480411.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869398|gb|ACL49733.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 326
Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 30/297 (10%), Positives = 86/297 (28%), Gaps = 10/297 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + + V+++ S
Sbjct: 32 DSGIVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNSVRKRVELNPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S + + N + + LV L+E++ G + ++ R
Sbjct: 86 MTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVDSRLVFALVESVFGGAGSQP-KVEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + + + + + + L + ++ V I
Sbjct: 145 FTRIEQAVVDKIVKIALDNMEESWRPVHDVKLELVR--SEINPQFAAIVPPSDVVVVITF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ ++ S ++ +P T+ S Q + + + + V +
Sbjct: 203 EVELDTALGSMIICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLMETPVELKVC 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
T ++ +++G ++ E+ + G Y G + + +I
Sbjct: 263 FGKTTITGNQLLRMQVGDILVLDKDEEDMLDCTVAGVCKYQGIAGTIKAMKSFQIIK 319
>gi|300854133|ref|YP_003779117.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
gi|300434248|gb|ADK14015.1| flagellar motor switch protein [Clostridium ljungdahlii DSM 13528]
Length = 331
Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 44/309 (14%), Positives = 107/309 (34%), Gaps = 13/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRTNVKVKVE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS V + + S + + V +++ LLG + + ++
Sbjct: 84 SVQQITYEEFIHSVPNPTVLTIFKMPPLSGSVLFEVNPQFVFQIIDLLLGGNGKGKYKV- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
+ + ++K + K A + + L +E N N+ V
Sbjct: 143 -KEFTDIDKNIIKVVNAGLISNLKLAWEDVMPIETEVEGLET--NPALNQTLAPNDPVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I ++ + N ++ + IP ++ K Q+ E+ + + + ++V
Sbjct: 200 ITFSVEMGNSSTFINICIPYLSIEKVLDKLVVQYWFQDSDEDILNESREKLRNRLDIVDV 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T+++ + L +G V+ + + L K Y + G + KN + I
Sbjct: 260 ELTAILGTVDVTVQEFLNLNVGDVLTLKEKTTSPVKLMVEDKVYYYGKPGVIDKNMGVEI 319
Query: 301 TDRINFDQK 309
D ++ D +
Sbjct: 320 LDILDKDVE 328
>gi|289578422|ref|YP_003477049.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
Ab9]
gi|297544698|ref|YP_003677000.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528135|gb|ADD02487.1| flagellar motor switch protein FliM [Thermoanaerobacter italicus
Ab9]
gi|296842473|gb|ADH60989.1| flagellar motor switch protein FliM [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 332
Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 92/285 (32%), Gaps = 8/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L + V+++ S + +S +
Sbjct: 50 SKEQLRTLQMIFENLTRSLTSFLSGYLRTVVNVTVISVDQLTYYEFSNSLNNPVFIAIID 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ F + +NN +L+ +LG + +L +R + +E L + + Q+ +
Sbjct: 110 AAPLEGPFLLEFNNNTTYAILDRILGGIGK--GELVDRDYTEIEISLLTKIVKQMLPLFK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + +P+L + NE V +++ I +P TL
Sbjct: 168 EPWGNIVDINPSLVRVET--NSQFAQIISPNETVALCTLSLKINETEGMMNFCMPHLTLE 225
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + K + + + ++ T+K+ + +IG +
Sbjct: 226 PIVPKLTTKFWFSSLKKEGRVS-PELIKSKISKTYIPLTAQLGSTTITVKEFLNFEIGDI 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I K + + + G Y+++IT+ I +
Sbjct: 285 ILLDKNFKDPVDIIIDKNVKFRGIPGIRNNKYSVKITEVIYKGDE 329
>gi|209884529|ref|YP_002288386.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
OM5]
gi|209872725|gb|ACI92521.1| flagellar motor switch protein FliM [Oligotropha carboxidovorans
OM5]
Length = 398
Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 4/300 (1%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ + + + + + + +V++S
Sbjct: 78 DSEVHLEDHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRIT 137
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNR 125
S +F+ ++S V + W + ++L+ ++++ LLG +T ++ R
Sbjct: 138 SVRFADYLNSIPLPCVLTVFKAEEWENFGLFTVDSSLIYSMIDVLLGGRRGQTSLRIEGR 197
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+T+E L KR + + A Q + ++ + +
Sbjct: 198 PYTTIETNLVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVR 255
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ + +E+ + L++P T+ + L + + A + Q + +D
Sbjct: 256 LRVDMEDRGGNVELLLPYATIEPIRNVLLQMFMGEKFGRDPIWEGHLATEIAQAELYVDA 315
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + LK +++L++G +P R + ++ +GRVG IR++ +
Sbjct: 316 VLYEAEIPLKQLMSLQVGDTLPLDIRPDALVSVRCGDVKLSEGRMGRVGDRVAIRVSKPL 375
>gi|163794148|ref|ZP_02188121.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
gi|159180762|gb|EDP65281.1| flagellar motor switch protein FliM [alpha proteobacterium BAL199]
Length = 341
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 103/302 (34%), Gaps = 4/302 (1%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ + + + + + + +V++S +
Sbjct: 41 EAGDGDGDTSGIHAIVNSALVSYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDNIT 100
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNR 125
S +F ++S + S W + + + L+ ++++ LLG ++ R
Sbjct: 101 SIRFGDYLNSIPLPAMLSVFKAEEWDNFGLLVVDSALIYSIVDVLLGGRRGTAAMRIEGR 160
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+T+E+ L +R + + + L+ + + + T
Sbjct: 161 PYTTIERNLVERMVTVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATIARPANAAVLAR 218
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ + +E+ L++P TL + L + + A + + +V +D
Sbjct: 219 LRIDMEDRGGRLELMLPYATLEPVRELLLQMFMGEKFGRDSIWETHLANELWNTDVELDA 278
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ L DV+ LK G I + + ++S ++GR + +RI++R+
Sbjct: 279 VLDEIVMPLHDVLNLKPGSRILLNAMPNSTIDMRCGNVSLFSGKMGRKNGSIAVRISNRL 338
Query: 305 NF 306
Sbjct: 339 RK 340
>gi|83594172|ref|YP_427924.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
11170]
gi|83577086|gb|ABC23637.1| flagellar motor switch protein FliM [Rhodospirillum rubrum ATCC
11170]
Length = 384
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 107/297 (36%), Gaps = 4/297 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + QS +F
Sbjct: 89 DKSGIQAIISTALVSYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDNIQSYRFGDY 148
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + S W + + ++++ ++++ LLG ++ R +T+E+
Sbjct: 149 LNSIPLPAMLSVFKAEEWDNYGLLTIDSSMIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 208
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + + A L+ + + + T + + + +E+
Sbjct: 209 NLVERLVHVVLADLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 266
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
++IP TL + L + + A + + V +D ++
Sbjct: 267 RGGRLDMLIPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEEMWSTEVQMDAILDEVYM 326
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L ++++++G I F + L ++ ++GR G+N IR+ + N +
Sbjct: 327 PLNKILSMEVGSQILFNATPDSTVQLRCGDVPMFDGKMGRKGQNIAIRVDSKHNRAK 383
>gi|89895728|ref|YP_519215.1| hypothetical protein DSY2982 [Desulfitobacterium hafniense Y51]
gi|89335176|dbj|BAE84771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 338
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 41/285 (14%), Positives = 103/285 (36%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K ++ Y + L + ++ +S + + I S + S +
Sbjct: 55 SKDQIHSLQNIYENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYT 114
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L+ + S L +++ LLG + + NR L+ +E+ + Q+ ++
Sbjct: 115 LNPLEGTLLMEMSPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIG 172
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P E + NE + + + + + + + +P L
Sbjct: 173 EAWSEVIPNEP--EYIVLETNPQFTQIVAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLE 230
Query: 208 KTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ +++ S++ ++ RK V++ T + + ++D++ L G V
Sbjct: 231 PVLDKLSTLFLFSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDV 290
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
IP + K + + G G++ ++IT+ + +
Sbjct: 291 IPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 335
>gi|144897829|emb|CAM74693.1| Flagellar motor switch protein fliM [Magnetospirillum
gryphiswaldense MSR-1]
Length = 382
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 39/281 (13%), Positives = 103/281 (36%), Gaps = 4/281 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + + + +V++S + S +F ++S + +
Sbjct: 104 SYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDYLNSIPLPAMLAVFK 163
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
W + + ++L+ ++++ LLG ++ R +T+E+ L +R + + + L
Sbjct: 164 AEEWDNYGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDL 223
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ + + + T + + + +E+ L++P TL
Sbjct: 224 SAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMEDRGGRLELLLPYATL 281
Query: 207 LKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ L + + A + + V ++ ++ + L+DV+ K+G I
Sbjct: 282 EPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVQMEAVLDEQVMGLRDVLNWKVGSKI 341
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ + L ++ +GR G + IR+ D+I
Sbjct: 342 LLNAQPNSPIDLRCGDVSMFRGRMGRKGPHIAIRVDDKIKG 382
>gi|302338090|ref|YP_003803296.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
11293]
gi|301635275|gb|ADK80702.1| flagellar motor switch protein FliM [Spirochaeta smaragdinae DSM
11293]
Length = 341
Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats.
Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 8/280 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + + + ++ V + S + I S +
Sbjct: 48 SKEQIRTVSIMHETFARLTTTALSAQLRSMVHVHVASVDQLTYEEFIRSIPNPTTLGIIN 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + ++++ L+G E NR L+ +E+ + + I +I L
Sbjct: 108 MDPLKGSAVLEIDPAITFSVIDRLMGGQGE--GSKVNRDLTDIEQTVMEGIIVRILGNLR 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P L + E V + + + V IP T+
Sbjct: 166 EAWSQVIDLRPRLGQIET--NPQFAQIVPPTEMVVLVTLETKVGEVEGMMNFCIPYLTIE 223
Query: 208 KTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + + ++ + + + + I T++DV++L+ G V
Sbjct: 224 PIISKLSAQYMYSSVRSGATTENLNILKDRLSTVAIPVVAEIGEMNLTVRDVLSLRAGDV 283
Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
I R + ++ + C G VG ++I R
Sbjct: 284 IRLPDVRVGDPMTIKIGNRKKFECRPGLVGNKVAVQIVHR 323
>gi|307546956|ref|YP_003899435.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
gi|307218980|emb|CBV44250.1| flagellar motor switch protein FliM [Halomonas elongata DSM 2581]
Length = 347
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 42/307 (13%), Positives = 96/307 (31%), Gaps = 10/307 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
P P R+ + + + + + DI+
Sbjct: 29 GGSAPKVRPFDPASQHRII------RERLHTLDIINERFARHFRMGLFNLIRRSADITVD 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + +S + + ++ + I NLV +++NL G + +
Sbjct: 83 SVRYQSYSEFSRNVPVPTNINMIAMKPLKGSALIVFPPNLVFMVVDNLFGGDGRFLTKSE 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ +R + + + + + N NE V
Sbjct: 143 GREFTNTEQRIIQRMLRLAIEAYSDSWRSVYPLEISFLRSE-MQAKFANITNSPNEIVVN 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
N N+ + N+ASSF + +P + + ++ + ++Q A + V +
Sbjct: 202 TNFNLEVGNLASSFQICMPYSMIEPLRDLLINPLSDGHQDQDSTWTRRMAGEIRHSTVEL 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + DV L++G ++P +G + CE G +R+
Sbjct: 262 VADFADLPSRIADVTALEVGDILPLELP--ETVTAKVDGVPVMECEYGSQHGQRALRVLR 319
Query: 303 RINFDQK 309
+
Sbjct: 320 LFDHAAD 326
>gi|56964023|ref|YP_175754.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
gi|56910266|dbj|BAD64793.1| flagellar motor switch protein FliM [Bacillus clausii KSM-K16]
Length = 329
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 96/307 (31%), Gaps = 13/307 (4%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
K R K + S + Y + L K+ V I S
Sbjct: 32 SEKKVRVYDFKRALRF------SKDQIRNLSRIHENYARLLTTNLSAKLRSLVQIQVASV 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + S + + I + N+ + + +LG + ++ N
Sbjct: 86 EQVPYEEYVRSIPTMTFLNVIEPIPLNGRVLIEINPNIAYAMFDRVLGGHGMSFNKIDN- 144
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
L+ +E K+ + A + +T E P E+ NE V I+
Sbjct: 145 -LTEIETKILSGLFESMLASFAEAWTTVIEMEPITENIEV--NPHFLQLVSPNETVVVIS 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
++ +I N + +P L + Q + S + ++ Q + +
Sbjct: 202 LSTSIANTTGLMTICLPHVVLEEILPKLTSHHWFQEQRGALSTEDQALLNKQVRQTTLEV 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T+++ + L G V+ + G++ +S + G +++TD
Sbjct: 262 AAELGRSTITIEEFLRLGKGDVVALNQLIDEPLDVLVGGEKKFSGQPGVKRDRMALQVTD 321
Query: 303 RINFDQK 309
+
Sbjct: 322 VLGGTDD 328
>gi|290475711|ref|YP_003468600.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
gi|289175033|emb|CBJ81836.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus bovienii SS-2004]
Length = 335
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 36/310 (11%), Positives = 85/310 (27%), Gaps = 10/310 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S P P R+ + + + + + DI+ +
Sbjct: 30 SGESEIRPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L +LV ++NL G ++
Sbjct: 84 IKIQPYHEFARNLAVPTNLNLVHLKPLRGTALFAFEPSLVYIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + + N N+ V T
Sbjct: 144 REFTYTEQRVINRMLKLALDAYRDAWDSIFKIEVEYVRSE-MQVKFTNITTSPNDIVVTT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNID 243
+ I + F + IP + + + + ++ + +
Sbjct: 203 PFQVEIGALCGEFNICIPFAMIEPLRERLTNPPVENVRQEEGQWRESLVKQVQHSELELV 262
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L ++ L+ G V+P I +G + + + G + Y +R+
Sbjct: 263 ANFVDIPLRLSKILQLRRGDVLPIERP--ERLIAHVDGVPVLTSQYGTLNGQYALRVEHL 320
Query: 304 INFDQKSLKN 313
IN +L
Sbjct: 321 INPVLNALDE 330
>gi|303325483|ref|ZP_07355926.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3]
gi|302863399|gb|EFL86330.1| flagellar motor switch protein FliM [Desulfovibrio sp. 3_1_syn3]
Length = 326
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 32/297 (10%), Positives = 84/297 (28%), Gaps = 10/297 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + + V+++ S
Sbjct: 32 DSGIVAFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S + + N + + LV L+EN+ G + ++ R
Sbjct: 86 MTKFGEFMRSLPVPTSINIFKMDPLRGNAIMVVDSRLVFALVENVFGGAGTQP-KIEGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + + + + + + L + ++ V I
Sbjct: 145 FTRIEQAVVDKIVKIALDNMEESWRPVHDVKLELVR--SEINPQFAAIVPPSDVVVVITF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ ++ S ++ +P T+ S Q + + + + V +
Sbjct: 203 EVELDTALGSMIICLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLLETPVELKVH 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
T ++ +++G V+ + + G Y G V +I
Sbjct: 263 YGNTTITGNQLLRMQVGDVLVLDTDVEDLLTCTVAGVGKYQGIAGTVKAMKAFQIIK 319
>gi|288958672|ref|YP_003449013.1| flagellar motor switch protein [Azospirillum sp. B510]
gi|288910980|dbj|BAI72469.1| flagellar motor switch protein [Azospirillum sp. B510]
Length = 357
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 39/302 (12%), Positives = 99/302 (32%), Gaps = 4/302 (1%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ L + + + + + +V++S S
Sbjct: 54 GAGDGDNSGIMALVNSALVNYERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDQISSV 113
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSL 127
+F ++S + S W + + + L+ ++++ LLG ++ R
Sbjct: 114 RFGDYLNSIPLPAMLSVFKAEEWDNYGLMVVDSALIYSIVDVLLGGRRGTAAMRIEGRPY 173
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+T+E+ L +R + + + L+ + + + T + +
Sbjct: 174 TTIERNLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATIARPANAAVLVKLR 231
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ +E+ L+IP TL + L + + A + +V++ +
Sbjct: 232 IDMEDRGGRLELMIPYATLEPVRELLLQMFMGEKFGRDSIWETHLASELMVTDVDLSAVL 291
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ TL DV+ ++G I L ++ +GR G + +R+ +
Sbjct: 292 DEVTMTLHDVLNWRVGTRILLNATPDGAIELRCGDVSMFQGRMGRKGGHIAVRLEKELPK 351
Query: 307 DQ 308
+
Sbjct: 352 QE 353
>gi|183220997|ref|YP_001838993.1| flagellar motor switch protein FliM [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|167779419|gb|ABZ97717.1| Flagellar motor switch protein FliM [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 341
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 17/314 (5%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
K + K + + ++ + ++ V + S
Sbjct: 32 EQKKVKIYDFKRPDKF------SKDQIRTLQMMHEIFARLATTGLSAQLRALVVVHVASV 85
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ I S + ++ + + ++ T+++ L G E+ NR
Sbjct: 86 DQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGESSKV--NR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
LS +E + + I +I L + ST + P L + + N+ V I
Sbjct: 144 ELSDIELSVMEGIIVRILGNLRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLIT 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ + V L IP T+ + + + ++ + Q+ + +
Sbjct: 202 LETKVGEVERMTNLCIPYITIEPIINKLSAQYWYSSIRKGEVDENRAVIQERLDQVKIPL 261
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + +L D++ L +G VI KT ++ + + GRVG I+I
Sbjct: 262 ISEVGSVDISLNDLMNLHVGDVIKLENTPIKTDLMVKVGDRSKFKATPGRVGNRLAIQIG 321
Query: 302 DRINFDQKSLKNFL 315
D I + L
Sbjct: 322 DSI---EDIPDELL 332
>gi|219670152|ref|YP_002460587.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
DCB-2]
gi|219540412|gb|ACL22151.1| flagellar motor switch protein FliM [Desulfitobacterium hafniense
DCB-2]
Length = 331
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 41/285 (14%), Positives = 103/285 (36%), Gaps = 7/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K ++ Y + L + ++ +S + + I S + S +
Sbjct: 48 SKDQIHSLQNIYENYCRSLTTYLSGHLHSVIETKVSSIEQITYDEFIRSLPNPTILSLYT 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L+ + S L +++ LLG + + NR L+ +E+ + Q+ ++
Sbjct: 108 LNPLEGTLLMEMSPALAFAIIDRLLGGQGQGSEK--NRDLTEIERTIISHRAQQMINLIG 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P E + NE + + + + + + + +P L
Sbjct: 166 EAWSEVISNEP--EYIVLETNPQFTQIVAPNEMIILVTLEVQVGEMVGMVNMCLPYLVLE 223
Query: 208 KTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ +++ S++ ++ RK V++ T + + ++D++ L G V
Sbjct: 224 PVLDKLSTLFLFSTQAKVTSKEQVNAIRRKIEWAKVDMTTLLGHSEILVRDLLELAPGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
IP + K + + G G++ ++IT+ + +
Sbjct: 284 IPLMQNVKEALPVYVGNFRKFKGIPGLHGEHLAVQITEIVEEGRD 328
>gi|217077700|ref|YP_002335418.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
gi|217037555|gb|ACJ76077.1| flagellar motor switch protein FliM [Thermosipho africanus TCF52B]
Length = 329
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 48/292 (16%), Positives = 101/292 (34%), Gaps = 7/292 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K E+ L + + L F ++ V + + + S +
Sbjct: 40 DFLRPRKFSKEQERTLQMLHENFARSLSTYFSGRLRSFVAVDLVGLDQMTYDEFVKSIRN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ S + + + + +LE LLG + NR + E ++ ++ +
Sbjct: 100 PSYIAVFSAKEFVGSAILDIDLEIFFGVLEILLGGPGMNVE--INRPPTDTEIEVMRKEV 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
I L Q ST +P +E + SNE V I + + I N+ +
Sbjct: 158 VNILTNLVQAWSTVYSFTPVIEAIET--NPQFVQIVASNEMVLVITLLLKIGNIEGYINI 215
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P + + K + SE+ + + V + + TL D+
Sbjct: 216 CWPSSLVEPIGEKLTTQSWFKTKQKIVSEEDMKALRENLARTIVELSVAVGETNLTLWDI 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ L++G VI ++ + NGK+ + G Y ++I + ++ ++
Sbjct: 276 LNLEVGDVIRLDTFKEDPLKIKLNGKDKFLGVPGVFKGKYAVKIVEVLDEEE 327
>gi|240145492|ref|ZP_04744093.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
gi|257202307|gb|EEV00592.1| flagellar motor switch protein FliM [Roseburia intestinalis L1-82]
gi|291536015|emb|CBL09127.1| flagellar motor switch protein FliM [Roseburia intestinalis M50/1]
Length = 326
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 97/292 (33%), Gaps = 7/292 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + Y + L + +V + + ++ +S ++
Sbjct: 39 DFARPAKFSKEHLRTLEIIFEHYGRLLSTNLPVYLRKNVQVEVMNSEAVTYSEFSNALSN 98
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + S + + I + NL +++ +LG + + R S +E + +R
Sbjct: 99 PVLLGIVNASPLNGSIVIEMAQNLGYVVVDRMLGGKGVPLDKP--RDFSEIELLIIERIF 156
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+L + E P LE + E + + +N+ I +V +
Sbjct: 157 NVAVDLLVEPWENVCELEPRLERIET--NSQFAQIISPTEMIALVTLNVKIGDVEGLLNV 214
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P TL + E + + + + I + ++ D
Sbjct: 215 CLPYLTLESIMDKLNTKYWYSSLQEKDEQQYTETIEALISKAPMPIKAVLGNSSISVNDF 274
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ L++G +I + + + ++ G G +Y +RIT I +Q
Sbjct: 275 LGLQVGDIIRLDTKVDQELSVFVGSIKKFTALPGETGDDYAVRITSVIREEQ 326
>gi|183598647|ref|ZP_02960140.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827]
gi|188020831|gb|EDU58871.1| hypothetical protein PROSTU_02052 [Providencia stuartii ATCC 25827]
Length = 335
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 36/307 (11%), Positives = 87/307 (28%), Gaps = 10/307 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ P P R+ + + + + + DI+ +
Sbjct: 33 EQVRPYDPNTQRRVIRERMQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIKI 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + LV ++NL G + +
Sbjct: 87 EPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRSEGKEF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ R + + + + N N+ V T
Sbjct: 147 TNTEQRIIHRMLKLALSAYRDAWRPIADIDVEYVRSE-MQVKFTNITTSPNDIVVTTPFL 205
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRI 246
+ I N F + IP + ++ + ++E + + + + +
Sbjct: 206 VEIGNTIGEFSICIPIAMIEPLRERLINPPVEQGHQENEAWVSNLVTQVKRSELELVANF 265
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ++ L+ G VIP I+S +G + + + G Y +R+ IN
Sbjct: 266 VDIPLRISRLLQLQKGDVIPIEKP--DRLIVSVDGVPVLTSQYGTQNGQYALRVEHLINP 323
Query: 307 DQKSLKN 313
+L
Sbjct: 324 VLNTLDE 330
>gi|310659031|ref|YP_003936752.1| flim [Clostridium sticklandii DSM 519]
gi|308825809|emb|CBH21847.1| FliM [Clostridium sticklandii]
Length = 332
Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 45/297 (15%), Positives = 95/297 (31%), Gaps = 7/297 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K K + + + L + I S + + +S
Sbjct: 40 DFKSPKKLAKDQLKTLHMIHENFSRILNTYLSGYLRSITQIDVISVEELSYYEFNNSISN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ S SN L T+++ +LG + + + +R + +E + + +
Sbjct: 100 PALISVIDFMPLPGQIIFEMSNRLAFTMIDRILGGNGKY--ESESRPFTEIETTILNKLM 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
A +S +L + E P L+ + SNE V I + + ++ +
Sbjct: 158 ANVSRLLIEPWENVIELDPELDKIET--NSQFAQIVSSNETVALITLRANVGDIEGLMNI 215
Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P L + +ED + + N++I+ + T+++
Sbjct: 216 CMPHIVLEPILPNLSTKFWFSTVKKELNEDDKGYLETRVKRANIDINAVVGDTYITVEEF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ L+ G VI + L GK Y G + N +IT + +
Sbjct: 276 IYLQEGDVIKLSRKIDEDLELHVEGKTKYLGRPGTLKNNMAFKITKVVEKGDEDYDE 332
>gi|288573016|ref|ZP_06391373.1| flagellar motor switch protein FliM [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568757|gb|EFC90314.1| flagellar motor switch protein FliM [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 334
Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 43/306 (14%), Positives = 95/306 (31%), Gaps = 13/306 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ S KN + K + + + + L + V
Sbjct: 28 ISQASAEKNVKGYDFRRPDKF------SKDQLRAIQMIHESFSRQLTTSLSTMVRSIVTC 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + S + V + N + + NLV +++ LLG E
Sbjct: 82 EVASVDQVAYEEFVRSMVQPTVMGVLEMYPLEGNAVVEMNPNLVFAIIDRLLGGKGEVFG 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R L+ +E + +R ++ +L ST + + +
Sbjct: 142 KP--RDLTDIESTVIERVFMRMLELLEDSWSTVIDVRFRFD--SMESNPFFVQICPGTDM 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
V + + ++I +V L IP + + +N+ +D
Sbjct: 198 VLLVTLRVSIGDVEGMVSLCIPYFVMEPVMDKLSSQIWFASTGKNKDQDHRGFLTASLGT 257
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ V + + +L DV+ L++G VI + + ++ G V Y+
Sbjct: 258 VKVPVHLELGDTVLSLFDVMRLRVGDVIRLDSMLDDPVRVRVGSRIKFTGRPGTVDGRYS 317
Query: 298 IRITDR 303
+ + +
Sbjct: 318 VEVLEV 323
>gi|24214781|ref|NP_712262.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
Lai str. 56601]
gi|45657699|ref|YP_001785.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24195784|gb|AAN49280.1| flagellar motor switch protein FliM [Leptospira interrogans serovar
Lai str. 56601]
gi|45600939|gb|AAS70422.1| FliM [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 341
Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 46/315 (14%), Positives = 103/315 (32%), Gaps = 17/315 (5%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S K + K + + + + ++ V + S
Sbjct: 31 SEQKKVKIYDFKRPDKF------SKDQIRTLQMMHETFARLATTGLSAQLRALVSVHVAS 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ I S + ++ + + ++ T+++ L G E +
Sbjct: 85 VDQLTYEEFIRSIPNPTTLAVINMDPLRGSAILEIDPSISFTIIDRLFGGKGEQAK--IS 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R LS +E + + I +I + + ST + P L + + N+ V I
Sbjct: 143 RELSEIEMSVMEGIIVRILGNMRESWSTVIDLRPRLGNIET--NPQFAQVVPPNDMVVLI 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVN 241
+ I V L IP T+ + + + ++ + Q+ +
Sbjct: 201 TLETKIGEVEGMTNLCIPYITIEPIINKLSAQYWYSSIRKGELDENRAVIQERLDQVAIP 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + ++ D + L IG V+ + ++ I+ ++ + C GRVG I+I
Sbjct: 261 LIAEVGSVDVSINDFMNLSIGDVVKLENTSTRSEMIVKVGERKKFKCLPGRVGSRLAIQI 320
Query: 301 TDRINFDQKSLKNFL 315
+R+ + L
Sbjct: 321 GERV---EDIPDELL 332
>gi|209964207|ref|YP_002297122.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
gi|7025351|gb|AAF35843.1|AF220001_1 polar motor switch protein FpiM [Rhodospirillum centenum]
gi|209957673|gb|ACI98309.1| flagellar motor switch protein FliM [Rhodospirillum centenum SW]
Length = 362
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 38/281 (13%), Positives = 97/281 (34%), Gaps = 4/281 (1%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
+ + + + + +V++S S +F ++S + +
Sbjct: 81 ERLPMLEVVFDRLVRMMSTSLRNFTSDNVEVSLDQISSVRFGDYLNSIPLPAMLAVFKAE 140
Query: 90 SWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
W + + + L+ ++++ LLG ++ R +T+E+ L +R + + + L+
Sbjct: 141 EWDNYGLMVIDSALIYSIVDVLLGGRRGTAAMRIEGRPYTTIERNLVERMVHVVLSDLSA 200
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
+ + + T + + + +E+ L+IP TL
Sbjct: 201 AFDPLSPVTFRFDRLET--NPRFATIARQANAAVLVKLRIDMEDRGGRLELLIPYATLEP 258
Query: 209 TTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ L + + A + + +V++ ++ +L DV+ +IG +
Sbjct: 259 VRELLLQMFMGEKFGRDSIWETHLASELWMTDVHLSAVLDEITLSLYDVLNWRIGSRVLL 318
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L ++ +GR G N +RI +
Sbjct: 319 NVAPDDTIELRCGDVPMFLGRMGRKGGNIAVRIDREAPKPE 359
>gi|257457606|ref|ZP_05622773.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
35580]
gi|257444992|gb|EEV20068.1| flagellar motor switch protein FliM [Treponema vincentii ATCC
35580]
Length = 344
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 41/321 (12%), Positives = 108/321 (33%), Gaps = 12/321 (3%)
Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
G + + P++ I + K + S + + + ++
Sbjct: 19 SGDTEAEEFRPVNDTRKIKIYDFKRPDKFSKEQMRTVSIMHETFARLTTTALSAQLRSMA 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+ S + I S + ++ N + ++ ++++ L G + ++
Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPTTLAVINMDPLKGNAVLEIDPSVTFSIIDRLFGGTGQS 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
+ R L+ +E + + I +I A + + + + P L + +
Sbjct: 139 --TMVQRELTDIEASVMEGVIVRILANMREAWTQVIDLRPRLGQIET--NPQFAQIVPPS 194
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
E V + + + IP T+ + + + + K
Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLKEKL 254
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
+++++ + K ++DV+ L+ G V+ R LS ++ + C+ G VG
Sbjct: 255 STVDMDVVAEVGSLKLPVRDVLNLRAGDVVRLTDTRVGHPFTLSVGSRKKFWCQPGVVGN 314
Query: 295 NYTIRITDRINF-DQKSLKNF 314
++I ++I +Q +
Sbjct: 315 KVAVQILEKIEDINQDEFEEL 335
>gi|323705435|ref|ZP_08117010.1| flagellar motor switch protein FliM [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535337|gb|EGB25113.1| flagellar motor switch protein FliM [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 329
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 46/310 (14%), Positives = 96/310 (30%), Gaps = 11/310 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ P + K + + + + V +
Sbjct: 27 IEENQQEAKVKPYDFRRPNKF------SKEQLRTLQMIFENMSRSFTTFLSGYLRTLVQV 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + + +S + + C+NN T+++ +LG +
Sbjct: 81 SIVSVEQITYYEFSNSLTNPVFIAVIDAKPLEGPIILECNNNTTFTIIDKILGGIGAS-- 138
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R + +E L R Q+ ++ S E +P + + NE
Sbjct: 139 ETVQRDYTEIEMGLLTRITTQLLPLIKDAWSNVIELNPEITRIET--NSQFTQVISPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL-IDPFARKTYQLN 239
V M++ I + +P T++ + + S + + I K
Sbjct: 197 VALCTMSLKINDNEGLINFCLPHITIVPILPLLTTKTWFSNAEKQTYDIGIIKDKISNTY 256
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + I K T++D+++ G VI R K + N + + G K Y ++
Sbjct: 257 VPLKVVIGTSKITVRDLLSFDKGDVIEINKRYKDPIEVKINDETKFLGVPGIRNKKYCVQ 316
Query: 300 ITDRINFDQK 309
IT+ +
Sbjct: 317 ITEICSEGDD 326
>gi|150388448|ref|YP_001318497.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
gi|149948310|gb|ABR46838.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
Length = 331
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 44/294 (14%), Positives = 94/294 (31%), Gaps = 7/294 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + + L + V + + + +S
Sbjct: 40 DFKSPKKLAKDQLRTLQIIHDNFSGMLNTFLAGYLRTYVQAEVLTVEELSYYEFSNSVVN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
V S + + + S ++ TL+E +LG + ++ R + +E L K +
Sbjct: 100 PAVLSIINFTPLEGQIIVDISPSISFTLIERILGGMGKETEEI--RPFTEIETTLIKNLM 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
Q+ ++ E P L+ + N+ V I +N+ I +V +
Sbjct: 158 RQVINLMIDPWENVIELQPKLDKIET--NSQFAQIVSPNDTVALITLNLKIGDVEGMMNI 215
Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
IP + N S+ +E ++ + V+I ++ T+KD
Sbjct: 216 CIPHIVIEPILDKLSTKLWFSNSSKPVTERDKKALQKRVEKSAVDITAQLGSTCVTVKDF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L++G VI + + K Y G +++T +
Sbjct: 276 LELQMGDVIMLDNPVDKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDQKGDEI 329
>gi|197285496|ref|YP_002151368.1| flagellar motor switch protein FliM [Proteus mirabilis HI4320]
gi|227355987|ref|ZP_03840379.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
gi|194682983|emb|CAR43414.1| flagellar motor switch protein [Proteus mirabilis HI4320]
gi|227163975|gb|EEI48877.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
Length = 343
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 40/308 (12%), Positives = 88/308 (28%), Gaps = 10/308 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
+ P P R+ + + + + + DI+ +
Sbjct: 40 EPDIQPYDPNTQRRVVRERLQS------LEIINERFARQFRMGLFNMLRRSPDITVGGIK 93
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L NLV ++NL G + R
Sbjct: 94 IHPYHDFARNLPVPTNLNLVHLKPLRGTALFTFEPNLVYIAVDNLFGGDGRFPIPVEGRE 153
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ + + + + + N N+ V T
Sbjct: 154 FTNTEQRIINKMLKLALDAYRDAWDSIFKIQVEYVRSE-MQVKFTNITSSPNDIVVTTPF 212
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLNVNIDTR 245
+ I ++ F + IP + ++ ++ + +D + + +
Sbjct: 213 QVEIGSMVGEFSICIPFAMIEPLRERLINPPIENLRQEDSVWLDSLVNQVKHSELELVAN 272
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L V+TLK G V+P I +G + + + G V Y +R+ IN
Sbjct: 273 FTDIPLRLSKVLTLKKGDVLPIDKP--ERLIAHVDGVPVLTSQYGTVHGQYALRVEHLIN 330
Query: 306 FDQKSLKN 313
+L
Sbjct: 331 PVLNALDE 338
>gi|320538201|ref|ZP_08038096.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
gi|320145018|gb|EFW36739.1| flagellar motor switch protein FliM [Treponema phagedenis F0421]
Length = 344
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 39/282 (13%), Positives = 99/282 (35%), Gaps = 8/282 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + + + ++ V + S + I S + +
Sbjct: 48 SKEQMRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + ++ ++++ L G + + R L+ +E + + I +I A +
Sbjct: 108 MDPLKGNAILEIDPSVTFSIIDRLFGGTGQGTKV--QRDLTDIENSVMEGVIVRILANVR 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + P L + +E V + + + + IP T+
Sbjct: 166 EAWTQVIDLRPRLGQIET--NPQFTQIVPPSEMVVLVTLETKVGDEEGMMNFCIPYITIE 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + + K +++++ + +++DV++L+IG V
Sbjct: 224 PIISKLSSQFWFSSVRRSSTTQYMGVLKDKLSTVDMDVVAEVGFLNLSVRDVLSLRIGDV 283
Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
I LS ++ + C+ G VGK ++I ++I
Sbjct: 284 IRLKDTHVGDPFTLSVGNRKKFLCQPGVVGKKVAVQILNKIE 325
>gi|126665008|ref|ZP_01735991.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
gi|126630378|gb|EBA00993.1| flagellar motor switch protein M [Marinobacter sp. ELB17]
Length = 331
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 40/296 (13%), Positives = 93/296 (31%), Gaps = 12/296 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + ++ + D+S + Q
Sbjct: 32 GVKSYDLASQDRIVRG------RMPTLEMINERFARYTRISLFNLLRRTADVSTSGVQIM 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + + LV L++N G ++ R +
Sbjct: 86 KFGEYVHTLYVPTSLNLCKIRPLRGTSLFVLDAKLVFKLVDNFFGGQGR-HAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q+ + + T + + E +E V ++
Sbjct: 145 PTENRIVQMMLNQVFHDMQEAWQTVLKVN--FEYLSSEVNPSMANIVSPSEVVVVSTFHI 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ +P + + + Q+ ++ E + ++V +++ I
Sbjct: 203 ELDGGGGELHFALPYSMIEPIRDVLDAGVQSDIDDTDERWVSALQEDIKTVSVAVNSTIC 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ +L++V K G +IP ++ANG IY+ LG +RI R
Sbjct: 263 RRHISLREVAKFKAGDIIPIEMA--EHLTVTANGIPIYTATLGTRDDKLALRIHGR 316
>gi|23099022|ref|NP_692488.1| flagellar motor switch protein FliM [Oceanobacillus iheyensis
HTE831]
gi|22777250|dbj|BAC13523.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
Length = 330
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 52/287 (18%), Positives = 100/287 (34%), Gaps = 9/287 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + Y + L F ++ V+IS TS + I S + + +
Sbjct: 48 SKDQIRSISRIHENYARMLTTFFATQLRSYVNISVTSVDQVPYEEFIRSIPKKTILNLYG 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + N+ LL+ LLG TI + N L+ +EK L + + L
Sbjct: 108 MEPLDGNLIMEINPNIAYALLDRLLGGKGSTITKDGN--LTEIEKTLFMQMFEKAEDALR 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S+ E P LE + + NE V +++ I + IP L
Sbjct: 166 DAWSSVVEIEPVLE--EFEENPQFMQKIAPNETVVVVSLTTVIGETTGMINICIPHVILE 223
Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ N+ E + + V + + ++ D + + G +I
Sbjct: 224 PIIPKLSVHYWMQSNSNKDEQAYGKMQQNLKKTEVELKAILGATTISIHDFLNFQQGDII 283
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI---NFDQK 309
+LS + + + G+ +++I + I N D +
Sbjct: 284 SLDQPIDAPLLLSIYDQPKFFAQPGKFKNKMSVQILEEIKGVNEDDE 330
>gi|27380936|ref|NP_772465.1| flagellar motor switch protein FliM [Bradyrhizobium japonicum USDA
110]
gi|27354102|dbj|BAC51090.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
Length = 400
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 46/295 (15%), Positives = 102/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + L + +V++S S +F
Sbjct: 87 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLLTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + +NL+ ++++ LLG + ++ R +T+E
Sbjct: 147 MNSIPLPAVLSVFKAEEWDNFGMATVDSNLIYSMIDVLLGGRRGTSQLRIEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
+L KR + + A Q + ++ + + + + +E+
Sbjct: 207 ELVKRLVEVVLADAEQAFRPLSPVTFTIDRLET--NPRFAAISRPANAAILVRLRIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + FA + Q +++D +
Sbjct: 265 RGGNIELLLPYATIEPIRGVLLQMFMGEKFGRDPVWEGHFATEIGQAEISVDAVLYEADI 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++ LK+G +P R + I +GRVG IR+T +
Sbjct: 325 PLKQLMRLKVGDTLPLDMRADANVTVRCGDVTITEGRMGRVGDRVAIRVTKPLRK 379
>gi|283850275|ref|ZP_06367564.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
gi|283574301|gb|EFC22272.1| flagellar motor switch protein FliM [Desulfovibrio sp. FW1012B]
Length = 326
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 95/306 (31%), Gaps = 7/306 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI---EKISSSLGYLYKKFLPKIFKEKMDLD 57
+ G I T L + + I + + + + M
Sbjct: 17 LSGGEIEAETDILEDDSGVVVFDLSNQDRIIRGRMPVLEIINDRFARLASNAMANAMRKR 76
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
D++ S KF + S + L N + + LV ++E+ G +
Sbjct: 77 ADVNPISIDMSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGS 136
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
++ R + +E+ + R + + + E ++E +
Sbjct: 137 QP-KIEGRDFTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPP 193
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTY 236
++ V + + +EN S ++ +P T+ S Q + I F +
Sbjct: 194 SDVVVVVTFEVELENAIGSLIVCLPYATIEPIRSKLYASFQTERLEVDHAWIARFKERLM 253
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ V + R + T + +++LK G +I + G + G V N
Sbjct: 254 ETPVELLVRFGRSQITGRQLLSLKPGDIIMLDNDVDALLDAEIQGVRKFRGIPGLVKSNK 313
Query: 297 TIRITD 302
+I
Sbjct: 314 AFQIVK 319
>gi|218778863|ref|YP_002430181.1| flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
AK-01]
gi|218760247|gb|ACL02713.1| Flagellar motor switch protein FliM [Desulfatibacillum alkenivorans
AK-01]
Length = 325
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 78/296 (26%), Gaps = 9/296 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + M DIS KFS
Sbjct: 38 YDFANQDRVIRG------RMPTLEVVNKRLARMFSSSLSATMRGAADISVRDTNMIKFSE 91
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
S + + + LV L+E G + ++ R + +E
Sbjct: 92 FQSSIPVPANIHMFKMEPLRGHALLVVDTPLVFQLIEYYFGGTPGGALKVEGRDFTRIEN 151
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ ++ + + + P + L + + + + +E
Sbjct: 152 QIIRKVVGIFLKDFDDAWAPIFPIKPVYVRSEM--NPQFAVIGLPIDLMIIVRFQVELET 209
Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L IP L Q+ + + ++ V I +
Sbjct: 210 TEGGMTLAIPYSMLEPIRDKLYSGFQSDNLEADASWRKRVESQVQEVLVEICVELGTAVI 269
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
T + +++L+ G VI G + + G V + I + RI D
Sbjct: 270 TAERLMSLRKGDVISLDQFADEPLTAKIQGVPKIAGKAGVVKGSKAIAVEGRITMD 325
>gi|42528263|ref|NP_973361.1| flagellar motor switch protein FliM [Treponema denticola ATCC
35405]
gi|4426948|gb|AAD20622.1| flagellar switch protein FliM [Treponema denticola]
gi|41819533|gb|AAS13280.1| flagellar motor switch protein FliM [Treponema denticola ATCC
35405]
gi|325474547|gb|EGC77733.1| flagellar switch protein FliM [Treponema denticola F0402]
Length = 344
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 35/282 (12%), Positives = 95/282 (33%), Gaps = 8/282 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + ++ + + + + I S + +
Sbjct: 48 SKEQMRTVQMMHETFARLTTTSLSAQLRSMAHVHVATVEQLTYEEFIRSIPTPTTLAIIN 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ ++ + ++ ++++ L G + R L+ +E + + I +I A +
Sbjct: 108 MDPLRASALLEIDPSVTFSIIDRLFGGKGQGSKV--QRELTEIESSVMEGVIVRILANMR 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ +T + P L + + +E V + + + + +P TL
Sbjct: 166 EAWTTVVDLRPRLGNIDT--NPQFVQIVTPSEMVLLVTLETKVGEEEGMMNICLPYITLE 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + K + V++ + +++DV+ L+ G V
Sbjct: 224 PIISKLSTQFWFSSVRRASTGQYAAAIKDKLSTVEVDMVAEVGSLDVSIRDVLNLRAGDV 283
Query: 265 IPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ R L+ + +SC+ G GK ++I ++I
Sbjct: 284 VRLPNVRVGDPFKLTVGSRPKFSCQPGVKGKKLAVQILEKIE 325
>gi|325109075|ref|YP_004270143.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
5305]
gi|324969343|gb|ADY60121.1| flagellar motor switch protein FliM [Planctomyces brasiliensis DSM
5305]
Length = 368
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 5/293 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + +L + + + +++ S + + S + F+
Sbjct: 54 SKEQMRAFQALHEGFSREFGASLSGMLRSIIEVKLISVDQLTYGEFVFSLENPTCFNLLF 113
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + +++ +++ LLG + +R L+ +E +L R L
Sbjct: 114 SDKLNGHLILDLNPSIIYPIVDRLLGGGKSSTQSYPSRPLTEIELRLVSRITKSAITALE 173
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
E + + NE + I+ +++ + L IP T+
Sbjct: 174 NSWINISELQLRVTQIE--SNPQLVQIVPPNEVIVLISFEISMGEMRGIMNLCIPFNTIE 231
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
T S + S VN+ + T +++ L +G V
Sbjct: 232 PLTGKLSSDTWSAYTKQQISPQQKAQLEVGIGAAKVNLVAALAETHLTASELMNLDVGDV 291
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
I K + GK +S ++G++ + I+I D++ + + L K
Sbjct: 292 ILTERDVKKGLTIFVEGKPTFSADVGQIKGHKAIQIRDKLPKTRDIVDQHLQK 344
>gi|306820127|ref|ZP_07453775.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551905|gb|EFM39848.1| flagellar motor switch protein FliM [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 332
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 47/293 (16%), Positives = 91/293 (31%), Gaps = 7/293 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K K S + Y + L + + +I +S + + +S
Sbjct: 40 DFKSPKKLAKDQLKTLSIIHDNYARVLSTYLSGYLRVITEIEVSSVEELSYYEFNNSISN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + + + S+ L T+++ +LG + NR S +E + + +
Sbjct: 100 PAMIAVVNFEPLPGQIILETSSKLAYTMIDRILGGDGLYDEE--NRDFSEIELIILSKLV 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
I ++ E SP LE + NE V I +++ I V +
Sbjct: 158 RNIVGYFSEAWENVIELSPYLEKIE--PNSQFAQIVSPNETVALITLSVKIGEVEGLMNI 215
Query: 200 IIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P L + + E + + I T++D
Sbjct: 216 CLPNIVLEPIIQNLSTNFLFSGIKKEFDEKGKKNLESNVKKAKLEAVAIIGDTFITVEDF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ +++G VI + L GK Y G KN +I I +
Sbjct: 276 IFMQVGDVIKLNKKVDEELELKVAGKTKYLGYPGTYKKNMAFKINKVIEKGDE 328
>gi|309388831|gb|ADO76711.1| flagellar motor switch protein FliM [Halanaerobium praevalens DSM
2228]
Length = 335
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 100/315 (31%), Gaps = 17/315 (5%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ QS K +L K + + + K+ V+
Sbjct: 28 KEQSEEKEVKDYDFRRPDKL------SKEQMRTLQMIHENLSRLFTTTLSTKLRSMVNFE 81
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S + +S IHS E + + L F + + +++ L G I
Sbjct: 82 VASIEQLSYSEFIHSLPEPTIIGISKLEPLEGQFIFEINPEVGFAVIDRLFGGLGNPIDD 141
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ RS + +E+ + KR + + ++ + P L + ++
Sbjct: 142 I--RSFTDIEQVVIKRVMNWLLGDFSEAWENISKLKPKL--LELESNPQFTQIVPDSDMT 197
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQL 238
I ++ I + +P L + E Q+ + I ++ +
Sbjct: 198 IIITLSARIGGSEGLMNICLPYIMLEPIVSNLNAQYWFSSTREKQTPEHIAKLRKRLNEA 257
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V +D + + T++D + L+ G V+ + + A L Y +G + I
Sbjct: 258 LVEVDAVLGSTEITVEDFLYLQPGDVVRLDKKVEENAELKIGRSRKYEAVVGNKNNHKAI 317
Query: 299 RI----TDRINFDQK 309
+I + + +
Sbjct: 318 QIIGVAENLLEESED 332
>gi|283781536|ref|YP_003372291.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
gi|283439989|gb|ADB18431.1| flagellar motor switch protein FliM [Pirellula staleyi DSM 6068]
Length = 362
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 12/302 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ +P R+ K + SL + + + V++ TS
Sbjct: 45 TREKVTPYDFKRPERVG------KEQMRALQSLHEGFGRNFGAALSALLRSIVEVKLTSV 98
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + S + F+ N + + +++ +++ LLG + + R
Sbjct: 99 DQLTYSEFVFSLENPTCFNLLRAEPLEGNLILDINPSILYPIIDRLLGG-GKEAGPVARR 157
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
L+ +E +L R L +++ + NE V I+
Sbjct: 158 PLTEIELRLVSRITHLFLQELKHAWEGVLPLKLSVDRVE--SNPQLVQIVPPNEVVVLIS 215
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNI 242
+T+ +V L IP ++ + + I +++ Q V +
Sbjct: 216 FELTLNDVRGMINLCIPFNSIERIGSKLTSNNWVAYGKGGATPQSIAQISKRLDQSKVEL 275
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T D++ L++G +I +T ++ G + G + + +RI
Sbjct: 276 VVTLAETTITTGDMIGLRVGDIITTDKDIRTPLEIAVQGMAKFQASCGALKGHKAVRIEQ 335
Query: 303 RI 304
I
Sbjct: 336 SI 337
>gi|150390473|ref|YP_001320522.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
gi|149950335|gb|ABR48863.1| flagellar motor switch protein FliM [Alkaliphilus metalliredigens
QYMF]
Length = 331
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 7/294 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + + + L + V + + + +S
Sbjct: 40 DFKSPKKLAKDQLRTLQIIHDNFSRMLNTFLAGYLRTYVQADVLTVEELSYYEFSNSVVN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
V S + + + S ++ TL+E +LG + ++ R + +E L K+ +
Sbjct: 100 PAVLSIINFTPLEGQIIVDISPSISFTLIERILGGVGKGTEEV--RPFTEIETTLIKKLM 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
Q+ ++ E P L+ + N+ V + +N+ I +V +
Sbjct: 158 RQVINLMVDPWENVIELQPKLDKIET--NSQFAQIVSPNDTVALVTLNLKIGDVEGMMNI 215
Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
IP + N S+ +E ++ + VNI ++ T+KD
Sbjct: 216 CIPHIVIEPILDKLSTKLWFSNISKPVTESDKKALQKRVEKSTVNITAQLGGTCVTVKDF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L+IG VI + + K Y G +++T +
Sbjct: 276 LELQIGDVIMLDNPVNKELQILVGDKIRYRGLPGTSKNKLAVKVTGIDEKGDEI 329
>gi|261855321|ref|YP_003262604.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus
c2]
gi|261835790|gb|ACX95557.1| flagellar motor switch protein FliM [Halothiobacillus neapolitanus
c2]
Length = 347
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 99/303 (32%), Gaps = 6/303 (1%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ + LT + + L + + + VDIS
Sbjct: 25 ATEEGVGDPSEARSYDLTTQERIVRGRLPTLEMLNERFARNFRIRLVSMLRRTVDISIEG 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ K+S H+ + + + LV L++N G ++
Sbjct: 85 VRMMKYSEYSHALYVPTSLTLVHVRPLKGTGLFMMESQLVFKLVDNFFGGFG-MHAKIEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E ++ R + Q + + + + ++ + E V
Sbjct: 144 RDFTPTELRVITRVLEQAIDEVQRSWTPVYPVN--IQTVSHEMNPQLANIVSGTEVVVVN 201
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ + +E F +++P + + Q E R+ + ++ +
Sbjct: 202 SFRIEVEGGGGKFDIVLPYSMIEPIRDLLDGGMQGDRLEVDERWTQALKRELGRADIELV 261
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
++ + +L D+ +++G V+PF +L+A G +Y +LG N ++RI
Sbjct: 262 AQLGEMRMSLADIAHMEVGDVLPFEMP--EQVVLTAQGLPLYQGKLGVHRGNKSVRIQSP 319
Query: 304 INF 306
+
Sbjct: 320 VKE 322
>gi|146282919|ref|YP_001173072.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
gi|145571124|gb|ABP80230.1| flagellar motor switch protein FliM [Pseudomonas stutzeri A1501]
Length = 342
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 6/275 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D+S Q KF +HS + +
Sbjct: 69 RMPTLEMINERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 128
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q A L +
Sbjct: 129 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAW 187
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + E +E V ++ +++ + +P +
Sbjct: 188 HAVLDVN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIR 245
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ +Q E + +NV + + ++ L+D++ ++ G VIP
Sbjct: 246 EMLDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEM 305
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
E I+ ANG + +LG N +++ + +
Sbjct: 306 PED--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 338
>gi|119476310|ref|ZP_01616661.1| flagellar motor switch protein M [marine gamma proteobacterium
HTCC2143]
gi|119450174|gb|EAW31409.1| flagellar motor switch protein M [marine gamma proteobacterium
HTCC2143]
Length = 320
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 42/278 (15%), Positives = 93/278 (33%), Gaps = 6/278 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +H+ + L
Sbjct: 48 RMPTLEMVNERFSRYTRISLFNLLRRSADVAVGGIQVQKFGEYVHTLFVPTSLNMIKLRP 107
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
I LV L++N G ++ R + E ++ + + + A L +
Sbjct: 108 LRGTGLIVLDAKLVFKLVDNYFGGDGR-HAKIEGREFTPTELRVVEMVLQEAFADLKEAW 166
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ +E V ++ ++ + +P +
Sbjct: 167 RAVLPVEFEFVNAEV--NPSMANIVSPSEVVVVSTFHIELDGGGGDMHITLPYAMIEPIR 224
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
S Q ++ + I VN+ ++ K+ L+D++ LK G VIP
Sbjct: 225 ETLDSGLQTDVDDIDDRWIKSLREDILNATVNMGCKVAEKEVPLRDIIDLKEGDVIPMEM 284
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
++SANG + +LG+ N +++ ++IN +
Sbjct: 285 PGD--LVISANGIPMMLAKLGQSKGNLALQVVEKINNE 320
>gi|298530627|ref|ZP_07018029.1| flagellar motor switch protein FliM [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510001|gb|EFI33905.1| flagellar motor switch protein FliM [Desulfonatronospira
thiodismutans ASO3-1]
Length = 325
Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 91/298 (30%), Gaps = 10/298 (3%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
R+ + + + + M VD + S
Sbjct: 31 EDSGVVTFDLSNQDRIIRG------RMPVLEIINDRFARLATNTMANAMRKRVDFNPISI 84
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
KF + S + + N + LV L+EN G + ++ R
Sbjct: 85 DMSKFGDFMRSLPVPTSINIFKIDPLRGNALMIIDTRLVFALVENFFGGTGSQP-KIEGR 143
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ +E+ + + + + L E + +E + T ++ V +
Sbjct: 144 DFTPIEQSIVVKVSKMLLSNLEDAWRPVHEVN--IELTRSEVNPQFATIVPPSDVVVVVT 201
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +EN S V+ +P T+ S Q++ + F + ++ V+ +
Sbjct: 202 FEVELENAIGSMVVCLPYATIEPIRSKLYASYQSERLEVDHAWLSRFKERLLEIPVDFNV 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + T + ++ ++ G ++ ++ G + G N ++
Sbjct: 262 TMGKTQITGRQLLNMEAGDILMLDTDQEDLLKAYVQGVLKFHGVPGFTKGNKAFQVVQ 319
>gi|154250207|ref|YP_001411032.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
Rt17-B1]
gi|154154143|gb|ABS61375.1| flagellar motor switch protein FliM [Fervidobacterium nodosum
Rt17-B1]
Length = 329
Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 43/293 (14%), Positives = 101/293 (34%), Gaps = 7/293 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + + + + K+ ++ + + S
Sbjct: 40 DFLRPQKFSKEQIRTVQMIHENFARSVSTYLSGKLRSFTSVNVVGIDQLTYDEYMKSIGN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + + + + + + +L+ LLG E I R + +E + K+ I
Sbjct: 100 PSFITIFTAREFVGSSILNINLEIFYGILDVLLGGPGEVID--AKRVPTEIEIGIIKKEI 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
I L+Q ++ P +E + SNE V + + + +
Sbjct: 158 VNILTSLSQAWASVHPFIPVVE--STETNPQFVQVVPSNEMVLAVTFFVNFGKIEGYMSI 215
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P + + K + +++L++ + +++ +I K TL ++
Sbjct: 216 CWPSSVIEPIGEKLTTQSWFKIKQKEVTQELVENLKLNIKKAKLDVIAKIGETKLTLGEI 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+TL++G VI + NGK + + G+ NY ++IT I ++
Sbjct: 276 LTLEVGDVIRLREHYDEPIKIEVNGKTKFLGKPGQFKGNYAVKITKVIEEGEE 328
>gi|146307837|ref|YP_001188302.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
gi|145576038|gb|ABP85570.1| flagellar motor switch protein FliM [Pseudomonas mendocina ymp]
Length = 323
Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats.
Identities = 39/279 (13%), Positives = 93/279 (33%), Gaps = 6/279 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + E +E V ++ ++ + +P +
Sbjct: 169 HAVMDIN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E I ++V + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
E I+ ANG + +LG N +++ + I +
Sbjct: 287 PEN--VIMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323
>gi|153954743|ref|YP_001395508.1| hypothetical protein CKL_2125 [Clostridium kluyveri DSM 555]
gi|219855207|ref|YP_002472329.1| hypothetical protein CKR_1864 [Clostridium kluyveri NBRC 12016]
gi|146347601|gb|EDK34137.1| FliM [Clostridium kluyveri DSM 555]
gi|219568931|dbj|BAH06915.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 331
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 46/310 (14%), Positives = 102/310 (32%), Gaps = 13/310 (4%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
+ + P + K + + Y + + ++ +V +
Sbjct: 29 QEEEQQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKV 82
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
S Q + IHS + + + S + V +++ LLG S +
Sbjct: 83 ESVQQITYEEFIHSVPNPTILTIFKMPPLSGTVLFEINPQFVFEIIDLLLGGSGT--GKY 140
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + ++K + K + + L E +E N N+ +
Sbjct: 141 KAREFTDIDKNIIKVVNEGLISNLKLAWEDVMEVETEVEGIET--NPALNQTLAPNDPIA 198
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLN 239
I+ ++ + + + IP ++ K Q+ E + + + +
Sbjct: 199 LISFSVELGKSTTFINICIPYLSIEKVLDKLVVQYWFQDGDEEVLAESREKLRERLNIVG 258
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+++ + + T+ + + L IG V+ + L K Y + G +GKN I
Sbjct: 259 IHLTAVLGTVEVTVNEFLNLNIGDVLTLKEKTTDPVKLMLEDKIYYYGKPGIIGKNMGIE 318
Query: 300 ITDRINFDQK 309
I D I+ D +
Sbjct: 319 ILDIIDKDVE 328
>gi|182418362|ref|ZP_02949657.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
gi|237666950|ref|ZP_04526935.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377744|gb|EDT75288.1| flagellar motor switch protein FliM [Clostridium butyricum 5521]
gi|237658149|gb|EEP55704.1| flagellar motor switch protein FliM [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 332
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 107/283 (37%), Gaps = 7/283 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + Y + + + +V + + + + IHS + + +
Sbjct: 48 SKEHIRTLELVHDNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITVFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + N + + +++ LLG + + ++ + S ++K + ++ + + L
Sbjct: 108 MPPLAGNIIFETNPQFSLQVIDILLGGNGDR--KVEAKEFSDIDKNIMRQITTGMISNLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P +E N N+ V I ++ + ++ + IP ++
Sbjct: 166 LAWESILEVEPEVEGIET--NPAINQTLAPNDPVALITFSVEMNKRSTFINMCIPYLSIE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K S +N E+ + + ++++V++ + T++D + L +G V
Sbjct: 224 KILDKLVVQYSFKNDDESLKAESREKIEEGIHKVDVDVIAELGKTSLTVEDFLKLNVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
I R + + +E Y + G GKN + I D + +
Sbjct: 284 IKLDTRSSSPIKVYVGNEECYCAKPGVSGKNMGVMILDITDKE 326
>gi|160880835|ref|YP_001559803.1| flagellar motor switch protein FliM [Clostridium phytofermentans
ISDg]
gi|160429501|gb|ABX43064.1| flagellar motor switch protein FliM [Clostridium phytofermentans
ISDg]
Length = 325
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 96/291 (32%), Gaps = 7/291 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + Y + L + +V + + ++ + ++
Sbjct: 39 DFHRPSKFSKEHLRTLDIIFEHYGRLLSTHLPAYLRKNVQVEVINSEAVVYQEFTNALSN 98
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + N I + N+ +++ +LG S + + +R S +E + +R
Sbjct: 99 PVLLGIIDFAPLEGNIIIELAENVGYAIVDRMLGGSGNPLEK--SRDFSEIELVIIERIF 156
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
++ +L + + + +P L + ++ + + +N+ I N+ +
Sbjct: 157 TVMTNILAEPWANVVKLNPRLIRIET--NSQFAQIISPSDMASIVTLNIKIGNIEGMMNV 214
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P L E + + + + + + +L ++
Sbjct: 215 CLPYACLEVIIDKLNTKYWYSTMQEKGDSNYQEFIETAISRARIPVKAVLGKSSISLNEL 274
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ ++ G +I + + + ++ G +Y ++I+ I +
Sbjct: 275 INMQKGDIIKLDRKIDDELSVYVGNIKKFTALPGASSDSYAVKISTIIREE 325
>gi|15639708|ref|NP_219158.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
pallidum str. Nichols]
gi|6225364|sp|P74927|FLIM_TREPA RecName: Full=Flagellar motor switch protein FliM
gi|2196898|gb|AAB61256.1| flagellar switch protein [Treponema pallidum]
gi|3323023|gb|AAC65687.1| flagellar motor switch protein (fliM) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|291060085|gb|ADD72820.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 344
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 106/312 (33%), Gaps = 11/312 (3%)
Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
G + ++ P+ I L K + S + + + ++ V
Sbjct: 19 SGDASIEDARPISDTRKITLYDFRRPDKFSKEQMRTLSLMHETFARLTTTSLSAQLRSMV 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+ S + I S + ++ N + ++ ++++ L G + +
Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSITFSIIDRLFGGTGQA 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
R L+ +E + + I +I A + + + + P L + +
Sbjct: 139 AKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIET--NPQFAQIVPPS 194
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
E V + + + IP T+ + + + + K
Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLRDKL 254
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
+++++ + + +++D++ L++G +I +LS ++ + C+ G VGK
Sbjct: 255 STVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGK 314
Query: 295 NYTIRITDRINF 306
+I +RI
Sbjct: 315 KIAAQILERIES 326
>gi|330502773|ref|YP_004379642.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
gi|328917059|gb|AEB57890.1| flagellar motor switch protein FliM [Pseudomonas mendocina NK-01]
Length = 323
Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats.
Identities = 38/279 (13%), Positives = 93/279 (33%), Gaps = 6/279 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D++ Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 110 LRGTGLFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLREAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + E +E V ++ ++ + +P +
Sbjct: 169 HAVMDIN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDGGGGDLHITMPYSMIEPIR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++Q E I ++V + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDVDDQDERWIKALREDILDVSVPLAATVARRQLKLRDILHMQPGDVIPVEL 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
E ++ ANG + +LG N +++ + I +
Sbjct: 287 PEN--VVMRANGVPTFKVKLGAHKGNLALQVLEPIERQR 323
>gi|146341901|ref|YP_001206949.1| flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
gi|146194707|emb|CAL78732.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. ORS278]
Length = 400
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 87 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + + L+ ++++ LLG T ++ R +T+E
Sbjct: 147 MNSIPLPAVLSVFKAEEWENFGLAMVDSTLIYSIIDVLLGGRRGNTQLRVEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR I + A Q ++ + + + + +E+
Sbjct: 207 NLVKRLIEVVLADAEQAFRPLSPVRFTIDRLET--NPRFAAISRPANAAILVKLRIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + FA + + V +D +
Sbjct: 265 RGGNIELLLPYATIEPIRPVLLQMFMGEKFGRDPVWEGHFATEITRAEVAVDAVLYEADV 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++ LK+G +P R + + +GRVG IR+T +
Sbjct: 325 PLKQLMRLKVGDTLPLDIRPDALVAVRCGNTMLTEGRMGRVGDRVAIRVTKNLRK 379
>gi|319944169|ref|ZP_08018445.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
51599]
gi|319742464|gb|EFV94875.1| flagellar motor switch protein FliM [Lautropia mirabilis ATCC
51599]
Length = 349
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 11/298 (3%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
P R+ + + + L M + +I+++ G++S
Sbjct: 58 PYDLARQERIIRG------RMPALELIHERFARSLGLAMFTFMQRNPEITHSDPVVGRYS 111
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ + + + + + + LV T+++ + G + + + R S E
Sbjct: 112 DFLGTIQLPASINIMQTRPLAGSALLVLDGQLVSTIVDLMFGGTGRPMRKSEGREFSMTE 171
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
++L K+ I S+ + + + + E V + +
Sbjct: 172 QRLIKKLIDLSSSEYGRAWESIHPMELVFTR--SESQPQFANIAIPAEMVVSTTFTLDFN 229
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKK 250
+ + + IP L SS N + + + + +++ V + +
Sbjct: 230 GQSGTIQICIPYSVLEPIRDTLSSSLNTNSGEEKRSWLGQMSKEIKPAGVELVAELTTAT 289
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
TL +++ L+ G VI A+L I++ G Y +RI ++
Sbjct: 290 LTLGELMKLRTGDVIEIETGPG--AMLKIGQVPIFNGRYGEHNGRYAVRIDTVHSYTD 345
>gi|189025946|ref|YP_001933718.1| flagellar motor switch protein FliM [Treponema pallidum subsp.
pallidum SS14]
gi|189018521|gb|ACD71139.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
Length = 344
Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 106/312 (33%), Gaps = 11/312 (3%)
Query: 2 RGQSIHKNTSPLHP---ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
G + ++ P+ I L K + S + + + ++ V
Sbjct: 19 SGDASIEDARPISDTRKIKLYDFRRPDKFSKEQMRTLSLMHETFARLTTTSLSAQLRSMV 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+ S + I S + ++ N + ++ ++++ L G + +
Sbjct: 79 HVHVASVDQLTYEEFIRSIPTPSTLAVITMDPLKGNAVLEVDPSITFSIIDRLFGGTGQA 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
R L+ +E + + I +I A + + + + P L + +
Sbjct: 139 AKV--QRDLTDIENSVMEGVIVRILANVRESWTQVIDLRPRLGQIET--NPQFAQIVPPS 194
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKT 235
E V + + + IP T+ + + + + K
Sbjct: 195 EMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGVLRDKL 254
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGK 294
+++++ + + +++D++ L++G +I +LS ++ + C+ G VGK
Sbjct: 255 STVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQPGVVGK 314
Query: 295 NYTIRITDRINF 306
+I +RI
Sbjct: 315 KIAAQILERIES 326
>gi|90423020|ref|YP_531390.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisB18]
gi|90105034|gb|ABD87071.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisB18]
Length = 404
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 40/295 (13%), Positives = 101/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +FS
Sbjct: 91 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 150
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
+ S V S W + + L+ ++++ LLG + ++ R +T+E
Sbjct: 151 MSSIPLPAVLSVFKAEEWENFGLATVDSALIYSMIDVLLGGRRGQASMRVEGRPYTTIET 210
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q + ++ + + +++ +E+
Sbjct: 211 NLVKRLVEVVLADAEQAFRPLSPVTFKIDRLET--NPRFAAITRPANAAILVRLHIDMED 268
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + + + + + + Q +++D + +
Sbjct: 269 RGGNIELLLPYATIEPIRAVLMQMFMGEKFGRDPIWEGHLSTEIAQAEISVDAVLYEAEI 328
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++ LK+G +P R + + +GRV IR+T ++
Sbjct: 329 PLKQLMRLKVGDTLPLELRADALVAVRCGNVTLTEGRMGRVADRVAIRVTKQLRK 383
>gi|66768580|ref|YP_243342.1| flagellar motor switch protein FliM [Xanthomonas campestris pv.
campestris str. 8004]
gi|66573912|gb|AAY49322.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 337
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 18/303 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G++ + S I+ R+ + + + + D+
Sbjct: 31 LPGEARQYDLSSQDRIIRGRM-----------PTLEMVNERFARLWRIGLFNLIRRSADL 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S KF+ +HS + I LV T+++N G
Sbjct: 80 SVRGIDLVKFNEYMHSLYVPTNLNLIRFKPLRGTGLIVFEPTLVFTVVDNFFGGDGRFHT 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
++ R + E ++ + + Q A L + + + E E+
Sbjct: 140 RIEGREFTATEMRVIQLMLKQTFADLKEAWAPVMDVD--FEYINSEINPHFANIVTPREY 197
Query: 181 VTTINMNMTIENVASSFVLIIPQ--ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
V ++ +E P + Q+ ++ + +
Sbjct: 198 VVVCRFHVELEG-GGRRDPHHPAVLDAGADPRTARRRHQSDRNDRDDSWNVMLREQLDTA 256
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V + + + K+ +L+ + LKIG ++P + L +++ E G N +
Sbjct: 257 EVTLSSVLASKRMSLRQLTGLKIGDILPIDLPAQVP--LCVEEIPLFTGEFGVSNGNNAV 314
Query: 299 RIT 301
+IT
Sbjct: 315 KIT 317
>gi|83312597|ref|YP_422861.1| flagellar motor switch protein FliM [Magnetospirillum magneticum
AMB-1]
gi|82947438|dbj|BAE52302.1| Flagellar motor switch protein fliM [Magnetospirillum magneticum
AMB-1]
Length = 393
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 33/291 (11%), Positives = 101/291 (34%), Gaps = 4/291 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 99 DKSGIQAILNSALVSYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDY 158
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + W + + ++L+ ++++ LLG ++ R +T+E+
Sbjct: 159 LNSIPLPAMLAVFKAEEWDNFGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 218
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + + + L+ + + + T + + + +E+
Sbjct: 219 NLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 276
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL + L + + A + + V ++ ++ +
Sbjct: 277 RGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVELEAVLDEQVM 336
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L++V+ K G + + ++ +GR G++ I++ +
Sbjct: 337 NLREVLNWKPGSKFMLNATADSQIDMRCGEVAMFRGRMGRKGQHIAIQVDE 387
>gi|294500928|ref|YP_003564628.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
gi|294350865|gb|ADE71194.1| flagellar motor switch protein FliM [Bacillus megaterium QM B1551]
Length = 328
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 44/282 (15%), Positives = 103/282 (36%), Gaps = 7/282 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + Y + L +F ++ V +S S + I S + + + +
Sbjct: 49 SKDQIRSLTRIHENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N+ +L+ LLG E+ ++ N L+ +E L + + + +
Sbjct: 109 VPPLEGHIIMEVNPNIAYAMLDRLLGGQGESGGEISN--LTEIETSLVRNLLEKTLDSMR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S+ E P E + NE V I++N+ I + L IP TL
Sbjct: 167 EAWSSIAEIEP--ETSEFEVNPQFLQVISPNEIVIVISLNVQIGDETGMINLCIPHVTLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + + ++ + + + + +++D + L G V
Sbjct: 225 PIVSKLSVHYWMQSSKKEPNVQEVEQLKEQINDAELQVVAELGTADISIEDFLALDAGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
I + + + + G+V + + ++I D +
Sbjct: 285 IRLQTSVHNPLTIYVGEQPKFIAQPGKVSRKFAVQILDDVKR 326
>gi|296283225|ref|ZP_06861223.1| flagellar motor switch protein FliM [Citromicrobium bathyomarinum
JL354]
Length = 339
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 4/293 (1%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L + + + + + +++S S +F ++
Sbjct: 47 LRAVIESRVVSHARLPMLEVVCERMVRSFATSMRNLTSDAIEVSLDDIASVRFGDFMNRV 106
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAK 136
+ + + +W + NL+ +++ LLG ++ R+ +T+E L
Sbjct: 107 PLPCMIAVFKVPAWQDYGLVTIEANLIYAVVDALLGGRKGAAPRKIEGRAFTTIETTLVS 166
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ I + + + LE + + + ++ +
Sbjct: 167 KMIELVLREFSTAFEPIAPITMELERIET--SPRFAAIAGPTNVASAATFAVDMDGRGGN 224
Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
F +++P TL + D + + V I T + ++ L D
Sbjct: 225 FTILLPFATLEPVRGKLSQRFMGEKLGGDNTWRDHMRNEILRTEVEIYTVLGEREMRLAD 284
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
V +L+IGQ IPF + G + ++GR + I I D I Q
Sbjct: 285 VHSLEIGQTIPFDVTPDDPFEVCCGGVPLARAQIGRQRNHVAIGIVDTIKQGQ 337
>gi|23015785|ref|ZP_00055552.1| COG1868: Flagellar motor switch protein [Magnetospirillum
magnetotacticum MS-1]
Length = 395
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 33/291 (11%), Positives = 101/291 (34%), Gaps = 4/291 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 101 DKSGIQAILNSALVSYERLPMLEVVFDRLVRMMSTSMRNFTSDNVEVSLDNILSLRFGDY 160
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + W + + ++L+ ++++ LLG ++ R +T+E+
Sbjct: 161 LNSIPLPAMLAVFKAEEWDNFGLLTVDSSLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 220
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + + + L+ + + + T + + + +E+
Sbjct: 221 NLVERMVHVVLSDLSAAFDPLSPVTFRFDRLET--NPRFATISRPSNAAIVAKLRIDMED 278
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL + L + + A + + V ++ ++ +
Sbjct: 279 RGGRLELLLPYATLEPVRELLLQMFMGEKFGRDSIWETHLAEELWLTEVELEAVLDEQVM 338
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L++V+ K G + + ++ +GR G++ I++ +
Sbjct: 339 NLREVLNWKPGSKFMLNATADSQIDMRCGEVAMFRGRMGRKGQHIAIQVDE 389
>gi|87310525|ref|ZP_01092654.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
3645]
gi|87286746|gb|EAQ78651.1| flagellar motor switch protein fliM [Blastopirellula marina DSM
3645]
Length = 376
Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 12/297 (4%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ +P R+ K + S+ + + + V++ TS
Sbjct: 58 EKITPYDFKRPERVG------KEQMRALQSMHEGFGRNFGAALSGLLRNIVEVKLTSVDQ 111
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+S I S + F+ + S N + + +++ +++ LLG + + R L
Sbjct: 112 LTYSEFIFSLENPSCFNLLTASPLEGNLILDINPSILYPIIDRLLGG-GKESSPVSRRPL 170
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E L R L + ++ + NE + I+
Sbjct: 171 TEIELTLVARITNLFLRELRIAWENVLDLQLSVVRVE--SNPQLVQIVPPNEVIVLISFE 228
Query: 188 MTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+TI +V L IP ++ + + SE+ + + +V +
Sbjct: 229 LTIGDVRGMMNLCIPFNSIERIGGKLTANTWFAYGTSEVSEESRQALSTQIDGASVEVGV 288
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ K T +D++ L++G VI + +S NG + G I++
Sbjct: 289 TLAETKITTEDLLELRVGDVITTPKDSREPLKVSVNGVTKFLAFPGAFKGRKAIQVD 345
>gi|224419055|ref|ZP_03657061.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
98-5491]
gi|253827995|ref|ZP_04870880.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313142563|ref|ZP_07804756.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
98-5491]
gi|253511401|gb|EES90060.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313131594|gb|EFR49211.1| flagellar motor switch protein FliM [Helicobacter canadensis MIT
98-5491]
Length = 352
Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+I S + + S F+ S
Sbjct: 50 SKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + ++ +++ LLG + R S +E L + Q+ L
Sbjct: 110 MKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLLDTILRQMMQNLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + E PN++ + NE V + M + I + + L P +L
Sbjct: 168 EAWAPITEIFPNVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
S + + VN+ + K TL++++ L++G ++
Sbjct: 226 SVLSRLASRDIMLSETSSKKSRNKELQALLGGAKVNVAAILGETKLTLREILDLEVGDIM 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
I++ +G+E + +G TI I + I ++ +K L
Sbjct: 286 RLDRPADDTVIINVDGREKFLASIGLHRYRKTIEIKEMIKTEKDQVKEILEM 337
>gi|255523752|ref|ZP_05390718.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
gi|296186755|ref|ZP_06855157.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
gi|255512621|gb|EET88895.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
gi|296048792|gb|EFG88224.1| flagellar motor switch protein FliM [Clostridium carboxidivorans
P7]
Length = 332
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 46/310 (14%), Positives = 104/310 (33%), Gaps = 14/310 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFRSPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS + + + S + + +++ LLG +
Sbjct: 84 SVQQITYEEFIHSVPNPTILTVFKMPPLSGSVLFETNPQFSFEIIDVLLGGKGT--GKYK 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + ++K + + + L E + +E N NE V
Sbjct: 142 AREFTDIDKNIMMVINTGLISNLKLAWDDVLEVNTEIEGLET--NPALNQTLAPNEAVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQS-EDLIDPFARKTYQLN 239
I ++ + ++ + IP ++ K Q+ ++ E+ ++ +N
Sbjct: 200 ITFSVEMGKSSTFINICIPYLSIEKVLDKLVVQYWFQDTNDEAILEESRVKLRQRLNIVN 259
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+N+ + T+ D + L +G V+ + T L K + G +GKN ++
Sbjct: 260 MNLTAVLGTTNITVDDFLRLGVGDVLTLNDKANTPIKLMVEDKPYCYGKPGVLGKNMGVQ 319
Query: 300 ITDRINFDQK 309
I D I+ D +
Sbjct: 320 ILDIIDKDVE 329
>gi|75675317|ref|YP_317738.1| flagellar motor switch protein FliM [Nitrobacter winogradskyi
Nb-255]
gi|74420187|gb|ABA04386.1| Flagellar motor switch protein FliM [Nitrobacter winogradskyi
Nb-255]
Length = 401
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 103/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 88 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 147
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + ++L+ ++++ LLG ++ ++ R +T+E
Sbjct: 148 LNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQSSLRIEGRPYTTIET 207
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q S +++ + + + + +E+
Sbjct: 208 NLVKRLVEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 265
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + A + Q + +D + +
Sbjct: 266 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 325
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+ ++TLK+G +P R + + +GRVG IR++ +
Sbjct: 326 PLRQLMTLKVGDTLPLEMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRHLRK 380
>gi|229827387|ref|ZP_04453456.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
49176]
gi|229788325|gb|EEP24439.1| hypothetical protein GCWU000182_02775 [Abiotrophia defectiva ATCC
49176]
Length = 326
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 7/292 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + S+ Y + L + V + ++ + +S
Sbjct: 39 DFARPSKFSKDHLRTLESIFEHYGRLLSANLPAYLRKTVQVEVRGSEAITYQEFQNSLSN 98
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + +L + + SNNL T+++ LLG I + R S +E + +R +
Sbjct: 99 PVLLAIMNLPPLKGSCIMEMSNNLGYTIIDRLLGGEGNPIEKT--RDFSEIEIVVLERIL 156
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ L + E +P L + E I +++ I V
Sbjct: 157 NTCTNYLEEPWHNVVEITPTLMRIET--NAQYAQIISPQEMTALITLSIKIGTVEGFMSF 214
Query: 200 IIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P L E + + + + I + ++ D
Sbjct: 215 CLPFTALEDVMDRLNTKFWFSALQEKDDTNYGEQIEEIIDRAQIPIRAVLGKSVVSVNDF 274
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
V L+ G V+ + + + + G Y +RIT I ++
Sbjct: 275 VNLQPGDVVRLNAKVDDELDVFVGNMKKFKALPGASSGVYALRITKVIREEE 326
>gi|148256789|ref|YP_001241374.1| flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
gi|146408962|gb|ABQ37468.1| Flagellar motor switch protein FliM [Bradyrhizobium sp. BTAi1]
Length = 400
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 45/295 (15%), Positives = 98/295 (33%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 87 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + + L+ ++++ LLG T ++ R +T+E
Sbjct: 147 MNSIPLPAVLSVFKAEEWENFGLATVDSTLIYSIIDVLLGGRRGNTQLRVEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR I + + Q ++ + + + + +E+
Sbjct: 207 NLVKRLIEVVLSDAEQAFRPLSPVRFTIDRLET--NPRFAAISRPANAAILVKLRIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + FA + Q V +D +
Sbjct: 265 RGGNIELLLPYATIEPIRPVLLQMFMGEKFGRDPVWEGHFATEIAQAEVAVDAVLYEADV 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++ LK+G +P R + + +GRVG IR+T +
Sbjct: 325 PLKQLMRLKVGDTLPLDIRPDALVAVRCGSTMLTEGRMGRVGDRVAIRVTKNLRK 379
>gi|148380702|ref|YP_001255243.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 3502]
gi|153934250|ref|YP_001384986.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 19397]
gi|153934570|ref|YP_001388456.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
Hall]
gi|170761147|ref|YP_001788060.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
Loch Maree]
gi|226950156|ref|YP_002805247.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
Kyoto]
gi|148290186|emb|CAL84305.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 3502]
gi|152930294|gb|ABS35794.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
ATCC 19397]
gi|152930484|gb|ABS35983.1| flagellar motor switch protein FliM [Clostridium botulinum A str.
Hall]
gi|169408136|gb|ACA56547.1| flagellar motor switch protein FliM [Clostridium botulinum A3 str.
Loch Maree]
gi|226842452|gb|ACO85118.1| flagellar motor switch protein FliM [Clostridium botulinum A2 str.
Kyoto]
gi|322807053|emb|CBZ04627.1| flagellar motor switch protein FliM [Clostridium botulinum H04402
065]
Length = 331
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS + + + + + + V +++ LLG + ++
Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + ++K + K+ + L E +E N E V
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I ++ + + + IP ++ K + E E + +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T+++ + L +G V+ R + L + Y + G +GKN ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALDTRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319
Query: 301 TDRINFDQK 309
D+I+ D +
Sbjct: 320 LDQIDKDVE 328
>gi|295706274|ref|YP_003599349.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
gi|294803933|gb|ADF40999.1| flagellar motor switch protein FliM [Bacillus megaterium DSM 319]
Length = 333
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 7/286 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + Y + L +F ++ V +S S + I S + + + +
Sbjct: 49 SKDQIRSLTRIHENYARMLINVFSAQLRNVVQVSVVSVDQIPYEEFIRSVPKVTILNVIA 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + N+ +L+ LLG E+ ++ N L+ +E L + + + +
Sbjct: 109 VPPLEGHIIMEVNPNIAYAMLDRLLGGQGESGEEISN--LTEIETSLVRNLLEKTLDSMR 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S+ E P E + NE V I++N+ I + L IP TL
Sbjct: 167 EAWSSIAEIEP--ETSEFEVNPQFLQVISPNEIVIVISLNVQIGDETGMINLCIPHVTLE 224
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
Q+ + + ++ + + + + +++D + L G V
Sbjct: 225 PIVSKLSVHYWMQSSKKEPNVQEVEQLKEQINDAELQVVAELGKADISIEDFLALDAGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
I + + + + G+V + ++I D + +
Sbjct: 285 IRLQTSVHNPLTIYVGEQPKFIAQPGKVSRKVAVQILDDVKRRNER 330
>gi|307720638|ref|YP_003891778.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
16294]
gi|306978731|gb|ADN08766.1| flagellar motor switch protein FliM [Sulfurimonas autotrophica DSM
16294]
Length = 366
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 107/315 (33%), Gaps = 6/315 (1%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+S +N P + L K + + + L M V+I
Sbjct: 26 ESDEENLLPQRQVTLYDFKRPNRVSKEQLRAFRGVHDKMARSLASQISSIMRSIVEIQLH 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + + S F+ S+ + I + ++ +L+ LLG E
Sbjct: 86 SVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGIIEINPSIAFPMLDRLLGGKGEPFD--A 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
+R S +E L + + + + L + E P +E + NE V
Sbjct: 144 SREFSDIELSLFETILRVMMSTLKEAWGPVMEIYPTIESKESSPNV--VQIVAQNEIVVM 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241
+ M + I + + + P +L S + + VN
Sbjct: 202 VVMEIIIGHSSGMMNICYPVISLEPVLPKLASRDLMLNETSSKKSRNTELKVLLGGAKVN 261
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
++ + ++ D++ LK+G VI ++ +GKE + E+G +I IT
Sbjct: 262 VEANLGDADLSMHDILELKVGDVIRLSSAANDIVTVAVDGKERFRGEIGLRRFRKSISIT 321
Query: 302 DRINFDQKSLKNFLH 316
+ I ++ ++K L
Sbjct: 322 EIIETEKDTVKRALE 336
>gi|3894104|emb|CAA11954.1| flagellar C-ring protein [Sinorhizobium meliloti]
Length = 315
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 92/312 (29%), Positives = 158/312 (50%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y
Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I +
Sbjct: 64 FRTGLRNDLIAALGDGVLLGDFSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
RSLS +E +A I+ VL ++ P + Y+ K L + F +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLEDVFAASI 183
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRIVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303
Query: 305 NFDQKSLKNFLH 316
+Q L++ +
Sbjct: 304 GSEQDILRHIMS 315
>gi|254785477|ref|YP_003072906.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
gi|237685691|gb|ACR12955.1| flagellar motor switch protein FliM [Teredinibacter turnerae T7901]
Length = 332
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 41/277 (14%), Positives = 97/277 (35%), Gaps = 6/277 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D+S Q KF +H+ +
Sbjct: 48 RMPTLEMINERFARYTRISMFNLLRRTADVSVGGIQIQKFGEYVHTLYVPTSLNMVKFRP 107
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
I LV L++N G ++ R + E ++ + + Q+ L++
Sbjct: 108 LRGTALIILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVQMVLEQVFVDLHEAW 166
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E +E V ++ ++ + +P +
Sbjct: 167 KAVKLID--FEYINSEVNPSMANIVSPSEVVVVSTFHVELDGGGGELHITMPYSMVEPIR 224
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
I + Q+ ++ + + + + V+++ + + TL+++V LK+G +IP
Sbjct: 225 EILDAGLQSDTDERDDRWVQALREDVMRARVDLECDVVRRDITLREIVDLKVGDIIPVTM 284
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
E A ANG ++ ++G+ N +RI D ++
Sbjct: 285 PEVHIAT--ANGVPMFQAKIGQCNNNLALRILDYVDR 319
>gi|118475490|ref|YP_892646.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
fetus 82-40]
gi|118414716|gb|ABK83136.1| flagellar motor switch protein FliM [Campylobacter fetus subsp.
fetus 82-40]
Length = 363
Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 100/292 (34%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+I S + + S F+ S
Sbjct: 50 SKEQLRAIKGIHDKLARNLASQISSIMRSIVEIRLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG + + NR L+ +E L + + L
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGNGDGFE--SNRELTDIEINLLDAILRIMMQRLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + PN+E + NE V + M + I N + + P L
Sbjct: 168 ESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMINICYPVIYLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + ++ + + L+ G ++
Sbjct: 226 PILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGRTVISVNEFLNLQEGDIL 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
AI+ + K+++ ++G +I+I + I D+ +KN L +
Sbjct: 286 RLDKSADDKAIVCIDKKDVFLAQIGLHRFRKSIKIEELIKTDKDEIKNILEQ 337
>gi|115523559|ref|YP_780470.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisA53]
gi|115517506|gb|ABJ05490.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisA53]
Length = 403
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 105/295 (35%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +FS
Sbjct: 90 DHSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 149
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + ++L+ ++++ LLG +T ++ R +T+E
Sbjct: 150 MNSIPLPAVLSVFKAEEWENFGLATVDSSLIYSMIDVLLGGRRGQTSMRIEGRPYTTIET 209
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q + ++ + + +++ +E+
Sbjct: 210 NLVKRLVEVVLADAEQAFRPLSPVTFKIDRLET--NPRFAAITRPANAAILVRLHIDMED 267
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + + + + A + Q +++D + +
Sbjct: 268 RGGNIELLLPYATIEPIRAVLMQMFMGEKFGRDPIWEGHLATEITQAQISVDAVLYEAEL 327
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK +++LK+G +P R + + +GRV IR+T ++
Sbjct: 328 PLKQLMSLKVGDTLPLEMRPDALVSVRCGSVILTEGRMGRVADRVAIRVTKQLRK 382
>gi|239906894|ref|YP_002953635.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
gi|239796760|dbj|BAH75749.1| flagellar motor switch protein FliM [Desulfovibrio magneticus RS-1]
Length = 326
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 39/297 (13%), Positives = 89/297 (29%), Gaps = 10/297 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + M D++ S
Sbjct: 32 DSGVVVFDLSNQDRIIRG------RMPVLEIINDRFARLASNAMANAMRKRADVNPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S + L N + + LV ++E+ G + ++ R
Sbjct: 86 MSKFGDFMRSLPVPTSINIFKLDPLRGNAILVVDSRLVFAMVESFFGGAGSQP-KIEGRD 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + R + + + E ++E + ++ V +
Sbjct: 145 FTPIEQAIINRVVRIALENMEESWQPVHEV--HIELVRSEVNPQFAAIVPPSDVVVVVTF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +EN S ++ +P T+ S Q + I F + + V + R
Sbjct: 203 EVELENAIGSLIVCLPYATIEPIRSKLYASFQTERLEVDHAWIARFKERLMETPVELLVR 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T + +++LK G ++ + G + G V N +I
Sbjct: 263 FGRSQITGRQLLSLKPGDILMLENDVDELLEAEIQGVRKFQGIPGLVKSNKAFQIVK 319
>gi|218886491|ref|YP_002435812.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757445|gb|ACL08344.1| flagellar motor switch protein FliM [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 326
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 22/318 (6%)
Query: 1 MRGQSIHKNTS---------PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFK 51
+ G I T P R+ + + + +
Sbjct: 17 LSGGEIESETDIPEDDSGIVPFDLANQDRIIRG------RMPVLEIVNDRFARLCTNALS 70
Query: 52 EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111
+ V+++ S KF + S + + N I + LV L+EN
Sbjct: 71 NTVRKRVELNPISIDMTKFGDFMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENF 130
Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
G + ++ R + +E+ + R I + + + +LE +
Sbjct: 131 FGGAGSQP-KIEGREFTRIEQAIVDRVIKIALDNMEESWRPVHDV--SLELVRSEINPQF 187
Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDP 230
++ V I + +E S V+ +P T+ S Q + +
Sbjct: 188 AAIVPPSDVVVVITFEVELETAIGSMVICLPYATIEPIRSKLHASFQTERLEVDHAWVSR 247
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + VN+ K T ++ L++G V+ + G + G
Sbjct: 248 LKERLLETPVNLKIHFGESKITGNQLLRLQVGDVLLLDTDTDDLLECTVQGVTKFWGISG 307
Query: 291 RVGKNYTIRITDRINFDQ 308
V N +I I ++
Sbjct: 308 TVKANKAFQI---IKEEE 322
>gi|254459067|ref|ZP_05072490.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
1]
gi|207084338|gb|EDZ61627.1| flagellar motor switch protein FliM [Campylobacterales bacterium GD
1]
Length = 365
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 110/315 (34%), Gaps = 6/315 (1%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+S N P + L K + + + L M V+I
Sbjct: 26 ESSDDNMLPQRQVTLYDFKRPNRVSKEQLRAFRGVHDKMARSLASQISSIMRSIVEIQLH 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + + S F+ S+ + I + ++ +L+ LLG E
Sbjct: 86 SVDQMTYGEFLMSLPNPTSFNVFSVKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFD--A 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
+R S +E L + + + + L + E P +E + NE V
Sbjct: 144 SREFSDIELSLFETILRVMMSTLKEAWGPVMEIYPTIESKESSPNV--VQIVAQNEIVVM 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241
+ M + I + + + P +L S + + VN
Sbjct: 202 VVMEIIIGHSSGMMNICYPVISLEPILPKLASRDLMLNETSSKKSRNTELQVLLGGAKVN 261
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
++ + + T++DV+ L+IG V+ +S +GKE + ++G +I+I+
Sbjct: 262 VEANLGDAELTMRDVLDLQIGDVVRLSSAANDIVTVSIDGKERFRGQIGLRRFRKSIQIS 321
Query: 302 DRINFDQKSLKNFLH 316
+ I+ ++ ++K L
Sbjct: 322 EIIDTEKDAVKRALE 336
>gi|153940240|ref|YP_001392022.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
Langeland]
gi|170756595|ref|YP_001782350.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
Okra]
gi|152936136|gb|ABS41634.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
Langeland]
gi|169121807|gb|ACA45643.1| flagellar motor switch protein FliM [Clostridium botulinum B1 str.
Okra]
gi|295320037|gb|ADG00415.1| flagellar motor switch protein FliM [Clostridium botulinum F str.
230613]
Length = 331
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 42/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS + + + + + + V +++ LLG + ++
Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + ++K + K+ + L E +E N E V
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I ++ + + + IP ++ K + E E + +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T+++ + L +G V+ + + L + Y + G +GKN ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALETKTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319
Query: 301 TDRINFDQK 309
D+I+ D +
Sbjct: 320 LDQIDKDVE 328
>gi|150019115|ref|YP_001311369.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
8052]
gi|149905580|gb|ABR36413.1| flagellar motor switch protein FliM [Clostridium beijerinckii NCIMB
8052]
Length = 332
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 105/283 (37%), Gaps = 7/283 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + Y + + + +V + + + + IHS + + +
Sbjct: 48 SKEHIRTLELIHDNYARIISNYLTGQTRQNVKVKIETVEQITYEEFIHSVQNPTIITIFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
++ S + + +++ LLG + + + + ++K + ++ + + L
Sbjct: 108 MAPLSGTIIFETNPQFSLQVIDVLLGGKGDR--KAQAKEFTDIDKNIMRQVTTGMISNLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P +E N N+ V I ++ + ++ + +P ++
Sbjct: 166 LAWDSVLEVEPEVETIET--NPAINQTLSPNDPVALITFSVEMNKRSTFINMCLPYLSVE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + +N +E + + + +++V I + T+ D + L +G V
Sbjct: 224 KILDKLVVQYAFKNDNEASMAESREKLEKGINKVDVEIVAELGTANITVDDFLKLTVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
I ++ + + +E Y + G VGKN + I D + +
Sbjct: 284 IKLDNKSSSPIKVYVGNEECYYAKPGVVGKNAGVMILDITDKE 326
>gi|168183192|ref|ZP_02617856.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
gi|237796179|ref|YP_002863731.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
657]
gi|182673661|gb|EDT85622.1| flagellar motor switch protein FliM [Clostridium botulinum Bf]
gi|229262117|gb|ACQ53150.1| flagellar motor switch protein FliM [Clostridium botulinum Ba4 str.
657]
Length = 331
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS + + + + + + V +++ LLG + ++
Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + ++K + K+ + L E +E N E V
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I ++ + + + IP ++ K + E E + +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T+++ + L +G V+ R + L + Y + G +GKN ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVSLETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319
Query: 301 TDRINFDQK 309
D+I+ D +
Sbjct: 320 LDQIDKDVE 328
>gi|187933524|ref|YP_001885005.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
Eklund 17B]
gi|187721677|gb|ACD22898.1| flagellar motor switch protein FliM [Clostridium botulinum B str.
Eklund 17B]
Length = 331
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 11/314 (3%)
Query: 1 MRGQSIHKNTSPLHPIL----LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56
+ + T+P L K + + + + ++
Sbjct: 17 LSTGELEPETAPKDDEKHKIKLYDFKSPQKFSKDHIRTLELIHDNFARITSNYLTGQIRK 76
Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
+V + + + + IHS + + + + + + + +++ LLG S
Sbjct: 77 NVKVKIETVEQITYEEFIHSVQNPTIITIFKMPPLTGSIIFETNPQFSFQIIDILLGGSG 136
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ ++ N+ S ++K + ++ + + L SP +E N
Sbjct: 137 DR--KIGNKEFSDIDKNIIRQVTTGMISNLKLAWEDILNVSPEVEGIET--NPAINQTLA 192
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFAR 233
NE V I ++ ++ + IP ++ K QN E +
Sbjct: 193 PNEPVALITFSVEFGEHSTFMNMCIPYLSIEKVLDKLVVQYWFQNDDEALIAESRVKMEE 252
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
++++ + + + D + L G +I ++ + + +E Y + G G
Sbjct: 253 GIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYVGDEECYYAKPGVTG 312
Query: 294 KNYTIRITDRINFD 307
KN + I D I+ +
Sbjct: 313 KNMGVAILDIIDKE 326
>gi|15895484|ref|NP_348833.1| flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
gi|15025214|gb|AAK80173.1|AE007722_2 Flagellar switch protein FliM [Clostridium acetobutylicum ATCC 824]
gi|325509631|gb|ADZ21267.1| Flagellar switch protein FliM [Clostridium acetobutylicum EA 2018]
Length = 331
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 7/291 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
T K + + Y + + ++ +V + + + + IHS
Sbjct: 40 DFTSPQKFAKEHIRTLELIHDNYSRIMSNYLTAQLRDNVKVKIETVEQITYEEFIHSVPN 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + + + + + ++ LLG + + R ++ ++K + +
Sbjct: 100 PTILTIFRMPPLKGSILYETNPQFIYQAIDILLGGNG--AGKYKPREITDIDKNIIMKIN 157
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ L P +E N +E V I ++ + N + +
Sbjct: 158 QGLIDNLKLAWGEVINVEPEIESLET--NPALNQTLAPHEPVALITFSVDVGNSHTYINI 215
Query: 200 IIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
IP ++ K Q E ++ ++ + V + ++ + T++D
Sbjct: 216 CIPYLSIEKILDKLVVQYWYQENDEEIVKESRVELRKRLDVVEVPVIAKLGQTEITVEDF 275
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L IG VI + + Y G +GKN I+I D+I+ D
Sbjct: 276 LRLSIGDVITLNSKCSDPVPVYIYDNLHYLAAPGILGKNMGIKILDKIDKD 326
>gi|296531938|ref|ZP_06894735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
49957]
gi|296267736|gb|EFH13564.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
49957]
Length = 355
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 102/300 (34%), Gaps = 4/300 (1%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
+ ++ + + + + + + +V++S S +F +++
Sbjct: 44 IEKVIARGLVSYERLPMLEIVFDRLVRIMSTSLRNFTSDNVEVSIEGITSLRFGDYLNTI 103
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAK 136
+ W + + + L+ ++++ LLG T ++ R +T+E+ L +
Sbjct: 104 PLPAMLVVFKAEEWDNYGLVVVDSALIYSVVDVLLGGRRGTTAMRIEGRPYTTIERGLIE 163
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
R + L+ E E + + + + +E+
Sbjct: 164 RLTEVVLKDLSDAFGPLAEVEFRFERLEV--NPRFAAISRPSNAAVLARLRVDMESRGGQ 221
Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
L++P TL + L + + A + Q V +D ++ + L D
Sbjct: 222 LQLLLPYATLEPVRELLLQQFMGEKFGRDSIWETHLAEELRQTEVALDVVLDEQTMRLSD 281
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
VV L++G +I L ++ ++G +RI + + L++ +
Sbjct: 282 VVRLQVGDLITLGVGPGAPVRLRCGDTSLFEGQVGGRKGRLAVRIDRAMPRQAEGLRDPV 341
>gi|168180850|ref|ZP_02615514.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
2916]
gi|182668347|gb|EDT80326.1| flagellar motor switch protein FliM [Clostridium botulinum NCTC
2916]
Length = 331
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 103/309 (33%), Gaps = 13/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS + + + + + + V +++ LLG + ++
Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSILFETNPQFVFQMIDVLLGGNGNGTYKM- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + ++K + K+ + L E +E N E V
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I ++ + + + IP ++ K + E E + +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEQSSSKIKERINIVSM 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T+++ + L +G V+ R + L + Y + G +GKN ++I
Sbjct: 260 ELTAELGRTSVTVEEFLRLAVGDVVALETRTEEPVHLLIEEEPGYYAKPGIIGKNIGLQI 319
Query: 301 TDRINFDQK 309
D+I+ D +
Sbjct: 320 LDQIDKDVE 328
>gi|152984239|ref|YP_001349238.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7]
gi|150959397|gb|ABR81422.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PA7]
Length = 323
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 12/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + R+ + + ++ + D++
Sbjct: 29 EATPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF +HS + + LV L++N G ++
Sbjct: 83 GVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + + Q L + E + E +E V
Sbjct: 142 GREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMN--FEYVNSEVNPAMANIVSPSEVVVV 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
++ ++ + +P + + + Q+ ++Q E I + V +
Sbjct: 200 STFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQDERWIKALREDVLDVQVPL 259
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ++ L+D++ ++ G VIP ++ ANG + +LG N ++I +
Sbjct: 260 GATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQIVE 317
Query: 303 RINF 306
+
Sbjct: 318 AVER 321
>gi|326791530|ref|YP_004309351.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
5427]
gi|326542294|gb|ADZ84153.1| flagellar motor switch protein FliM [Clostridium lentocellum DSM
5427]
Length = 328
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 37/312 (11%), Positives = 97/312 (31%), Gaps = 13/312 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M+ + K ++ K + + Y + + + V
Sbjct: 27 MQEANEQKGVKSYDFARPSKF------SKEQLRTLEIIFESYGRAISTYLSGHLRTMVSA 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ ++ +S ++ + + + + S N+ T+++ +LG S +
Sbjct: 81 EVMNAEAVTYSEFSNALINPVILAVTDFRPLKGSILLELSPNMGYTIIDRVLGGSGSGLE 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R + +E+ + ++ Q +L + E P LE + NE
Sbjct: 141 TI--REFTDIERVILEKIFIQFVQLLAEPWQNVVELDPMLEKIET--NSQVVQIISPNEI 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQ 237
+ + +N+ I NVA + IP + K + + + +
Sbjct: 197 IALVTLNIKIGNVAGMMNICIPHLVIESIMDKLNTKFWFAQKEQELGPSYHEYIEKMIEK 256
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ I + T+++ + L ++ + + ++ G
Sbjct: 257 SRIPIKAILGKTHITVREFLELSRSDIVKLDKDIDSGLDIYVGNILKFTGSPGEYKNKVA 316
Query: 298 IRITDRINFDQK 309
I+I I + +
Sbjct: 317 IKINHVIQREDE 328
>gi|118588708|ref|ZP_01546116.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
gi|118438694|gb|EAV45327.1| flagellar motor switch protein M [Stappia aggregata IAM 12614]
Length = 412
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 101/303 (33%), Gaps = 4/303 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
++T + L + + + + +V++S S S
Sbjct: 95 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 154
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRS 126
+F ++S + W I ++L+ ++++ LLG + ++ R
Sbjct: 155 VRFGDYLNSIPLPAILGVFKAEEWDGFGLITVESSLIYSIIDVLLGGGRGTSAVRVEGRP 214
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+T+E L ++ +A I + NLE + + +
Sbjct: 215 YTTIETGLVQQMVALILQDAEHAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 272
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +E+ S +++P TL + L + + A + + V +D
Sbjct: 273 RIDMEDRGGSVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEIHAAEVEVDAV 332
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ L V++L +GQ + F ++ + LG+V + IR+ +
Sbjct: 333 LYETYLPLGRVLSLDVGQTLVFDKEPTDPVMIKCGNIPLTEGTLGKVDDSIAIRVAKNLR 392
Query: 306 FDQ 308
+
Sbjct: 393 KPK 395
>gi|92116939|ref|YP_576668.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
gi|91799833|gb|ABE62208.1| flagellar motor switch protein FliM [Nitrobacter hamburgensis X14]
Length = 401
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 42/295 (14%), Positives = 102/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 88 DNSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 147
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + ++L+ ++++ LLG +T ++ R +T+E
Sbjct: 148 MNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 207
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q + +++ + + + + +E+
Sbjct: 208 NLVKRLVEVVLADAEQAFRPLSPVTFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 265
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + A + Q + +D + +
Sbjct: 266 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 325
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++ LK+G +P R + + +GRVG IR++ +
Sbjct: 326 PLKQLMALKVGDTLPLDMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRHLRK 380
>gi|152997440|ref|YP_001342275.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
gi|150838364|gb|ABR72340.1| flagellar motor switch protein FliM [Marinomonas sp. MWYL1]
Length = 324
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 6/273 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D+S Q KF +H+ +
Sbjct: 49 RMPTLEMINERFARYTRISLFNMLRRTADVSSGGLQVMKFGEYVHTLYVPTSLNLVKFRP 108
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S LV L++N G ++ R + E ++ + + Q+ L +
Sbjct: 109 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFKDLTEAW 167
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + LE +E V ++ ++ + +P +
Sbjct: 168 APVLKLE--LEYISSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 225
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ + + + + ++V + + +K +L +V+ K G +IP
Sbjct: 226 ELLDAGVQSDVDEKDDRWGKSLEQDVKDIDVRLSVSVANRKISLGEVLKFKAGDIIPIEM 285
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ANG + +LG + Y++++ +
Sbjct: 286 P--EFVTVRANGVPTFKGKLGVSNERYSVQMQE 316
>gi|328543159|ref|YP_004303268.1| flagellar motor switch protein FliM [polymorphum gilvum
SL003B-26A1]
gi|326412905|gb|ADZ69968.1| Flagellar motor switch protein FliM [Polymorphum gilvum
SL003B-26A1]
Length = 411
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 4/297 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
++T + L + + + + +V++S S S
Sbjct: 94 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 153
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126
+F ++S + W + ++L+ ++++ LL G T ++ R
Sbjct: 154 VRFGDYLNSIPLPAILGVFKAEEWDGFGLVTVESSLIYSIIDVLLGGGRGTTAVRVEGRP 213
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+T+E L +R + I A Q + NLE + + +
Sbjct: 214 YTTIETNLVRRMVEIILADAEQAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 271
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +E+ + +++P TL + L + + A + + + +D
Sbjct: 272 RIDMEDRGGTIEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLASEIHAAEIEVDAV 331
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ L V++L +GQ + F + + LG+V + IR+T
Sbjct: 332 LYETHLPLGRVLSLDVGQTLIFDVDPHDPITIKCGNVPLTEGTLGKVEDSIAIRVTR 388
>gi|15964406|ref|NP_384759.1| flagellar motor switch transmembrane protein [Sinorhizobium
meliloti 1021]
gi|307318903|ref|ZP_07598334.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
meliloti AK83]
gi|17380372|sp|O54246|FLIM_RHIME RecName: Full=Flagellar motor switch protein FliM
gi|15073583|emb|CAC45225.1| Flagellar motor switch transmembrane protein [Sinorhizobium
meliloti 1021]
gi|306895317|gb|EFN26072.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
meliloti AK83]
Length = 315
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 92/312 (29%), Positives = 158/312 (50%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y
Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I +
Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
RSLS +E +A I+ VL ++ P + Y+ K L + F +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303
Query: 305 NFDQKSLKNFLH 316
+Q L++ +
Sbjct: 304 GSEQDILRHIMS 315
>gi|289523560|ref|ZP_06440414.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289503252|gb|EFD24416.1| flagellar motor switch protein FliM [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 342
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 39/283 (13%), Positives = 102/283 (36%), Gaps = 7/283 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + + + + L F + V + S + + I S + V +
Sbjct: 50 KDQLRAIQMIHEFFSRQLTTAFSSFVRTMVSVEVASVEQLSYDEFIKSLVQPTVIVVMEM 109
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
SSN + + LV +++ +LG + +T + R L+ +E+ + +R + ++ +L +
Sbjct: 110 YPLSSNALLEINPRLVFAIIDRMLGGAGKTTYK--ARELTDIERTVTERVVMRMLELLEE 167
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
+T + +++ +++ V I + + I +V + IP +
Sbjct: 168 SWATIVDLRFRIQN--MESNPYFAQICPASDVVVVITLQVKIGDVDGFINICIPYFAIEP 225
Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + + ++ V + I LKD++ L++G VI
Sbjct: 226 VIDQLSSQRWFVSTGSREDDASQERIIERLSKVKVPVTVEIGHVDVMLKDILKLRVGDVI 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + + G ++++I ++
Sbjct: 286 KLEETYSEPVKVRVGERVKFLGHAGIYNNKHSVQIIKTFISEK 328
>gi|15596640|ref|NP_250134.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1]
gi|107100877|ref|ZP_01364795.1| hypothetical protein PaerPA_01001907 [Pseudomonas aeruginosa PACS2]
gi|116049388|ref|YP_791809.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218892684|ref|YP_002441553.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58]
gi|254234542|ref|ZP_04927865.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719]
gi|254239793|ref|ZP_04933115.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192]
gi|296390190|ref|ZP_06879665.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa PAb1]
gi|313106442|ref|ZP_07792673.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016]
gi|12230925|sp|Q51465|FLIM_PSEAE RecName: Full=Flagellar motor switch protein FliM
gi|9947394|gb|AAG04832.1|AE004574_3 flagellar motor switch protein FliM [Pseudomonas aeruginosa PAO1]
gi|115584609|gb|ABJ10624.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166473|gb|EAZ51984.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa C3719]
gi|126193171|gb|EAZ57234.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 2192]
gi|218772912|emb|CAW28724.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa LESB58]
gi|310879175|gb|EFQ37769.1| flagellar motor switch protein FliM [Pseudomonas aeruginosa 39016]
Length = 323
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 12/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + R+ + + ++ + D++
Sbjct: 29 EATPGSVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRSADVAVG 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF +HS + + LV L++N G ++
Sbjct: 83 GVQVMKFGEYVHSLYVPTSLNLVKMKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 141
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + + Q L + E + E +E V
Sbjct: 142 GREFTPTELRVVRMVLEQAFVDLKEAWQAVLEMN--FEYVNSEVNPAMANIVSPSEVVVV 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
++ ++ + +P + + + Q+ ++Q E I + V +
Sbjct: 200 STFHIELDGGGGDLHITMPYSMIEPIREMLDAGFQSDHDDQDERWIKALREDVLDVQVPL 259
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ++ L+D++ ++ G VIP ++ ANG + +LG N ++I +
Sbjct: 260 GATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQILE 317
Query: 303 RINF 306
+
Sbjct: 318 AVER 321
>gi|28211379|ref|NP_782323.1| flagellar motor switch protein fliM [Clostridium tetani E88]
gi|28203820|gb|AAO36260.1| flagellar motor switch protein fliM [Clostridium tetani E88]
Length = 332
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 97/285 (34%), Gaps = 6/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + Y + + M ++ S Q + IHS V +
Sbjct: 48 SKDHIRTLELIHDNYARIMSNYLTAHMRKNIKAKIESVQQITYEEFIHSIPNPTVLTVFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + V +++ LLG + E + R + ++K + K+ + +
Sbjct: 108 APPLNGTVLFETNPKFVFEVMDVLLGGNAEG-REYKLREFTDIDKNIIKQVNEGLIEGIK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
E P +E N NE V I ++ + ++ + IP ++
Sbjct: 167 LAWEDILELYPEIESIET--NPALNQTLAPNEPVALITFSVDMGKSSTFINICIPYLSIE 224
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K Q +E E+ + + + + K T+++ + L +G V
Sbjct: 225 KILDKLVIQYWFQENNEAVREESNKQLRDRINIVETELVAVLGGAKITVEEFLRLSLGDV 284
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ ++ ++ + + G V KN I+I D ++ D +
Sbjct: 285 LILDNQIDKPISINVENQLYAYGKPGVVDKNMGIQILDILDKDVE 329
>gi|327481259|gb|AEA84569.1| flagellar motor switch protein FliM [Pseudomonas stutzeri DSM 4166]
Length = 323
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 40/275 (14%), Positives = 93/275 (33%), Gaps = 6/275 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D+S Q KF +HS + +
Sbjct: 50 RMPTLEMINERFARYTRISMFNLLRRSADVSVGGVQVMKFGEYVHSLYVPTSLNLVKMKP 109
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
LV L++N G ++ R + E ++ + + Q A L +
Sbjct: 110 LRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFADLKEAW 168
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + E +E V ++ +++ + +P +
Sbjct: 169 HAVLDVN--FEYVNSEVNPALANIVSPSEVVVVSTFHIELDSGGGDLHVTMPYSMIEPIR 226
Query: 211 LISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ +Q E + +NV + + ++ L+D++ ++ G VIP
Sbjct: 227 EMLDAGFQSDVSDQDERWVKALREDILDVNVPLGATVVRRQLKLRDILNMQPGDVIPVEM 286
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
E I+ ANG + +LG N +++ + +
Sbjct: 287 PED--MIMRANGMPAFKVKLGAHKGNLALQVLEPV 319
>gi|88800464|ref|ZP_01116028.1| flagellar motor switch protein FliM [Reinekea sp. MED297]
gi|88776794|gb|EAR08005.1| flagellar motor switch protein FliM [Reinekea sp. MED297]
Length = 360
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 36/315 (11%), Positives = 98/315 (31%), Gaps = 12/315 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + R+ + + ++ + D++
Sbjct: 27 GADAEGVKSYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNFLRRSADVATG 80
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
Q KF +H+ + + LV L++N G ++
Sbjct: 81 GIQILKFGEYVHTLYVPTSLNLVKVRPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIE 139
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E ++ + ++Q+ + + + E +E V
Sbjct: 140 GREFTPTEIRVVQMILSQVFQDMKEAWGAVLDVD--FEYMSSEVNPAMANIVSPSEVVVV 197
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
++ ++ + +P + + + Q+ + E ++ V
Sbjct: 198 STFHIELDGGGGDLHMTLPYSMIEPVRDVLDAGVQSDVDEIDERWVESLRHDILGAKVPT 257
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + ++ L+++V L+ G VIP +ANG ++ +LG+ G N +R+
Sbjct: 258 NAVVAEREIKLRELVDLQAGDVIPIDLP--ETIKFTANGIPLFETKLGQCGDNLALRVER 315
Query: 303 RINFDQKSLKNFLHK 317
+ + + + +
Sbjct: 316 PVRKMSRDIGDMKTR 330
>gi|307311548|ref|ZP_07591189.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
meliloti BL225C]
gi|306899565|gb|EFN30194.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
meliloti BL225C]
Length = 315
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 92/312 (29%), Positives = 158/312 (50%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y
Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++G + +I + + + SL +W ++F +GC + ++I L+E LLGA +I +
Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDSPVLIALVEALLGAEPTSIEEPAP 123
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
RSLS +E +A I+ VL ++ P + Y+ K L + F +I
Sbjct: 124 RSLSKIEIDVALPVFHGIAEVLRTAVNAPGGFEPVVGRPYNSAERGKPDPVLQDVFAASI 183
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
RI L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D
Sbjct: 244 RIRLESLTLDTLSRLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSRYTVRVKDTH 303
Query: 305 NFDQKSLKNFLH 316
+Q L++ +
Sbjct: 304 GSEQDILRHIMS 315
>gi|125972998|ref|YP_001036908.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
27405]
gi|256004795|ref|ZP_05429770.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
2360]
gi|281417209|ref|ZP_06248229.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
gi|125713223|gb|ABN51715.1| flagellar motor switch protein FliM [Clostridium thermocellum ATCC
27405]
gi|255991245|gb|EEU01352.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
2360]
gi|281408611|gb|EFB38869.1| flagellar motor switch protein FliM [Clostridium thermocellum JW20]
gi|316940766|gb|ADU74800.1| flagellar motor switch protein FliM [Clostridium thermocellum DSM
1313]
Length = 328
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 41/294 (13%), Positives = 92/294 (31%), Gaps = 7/294 (2%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
K + + + Y + + + V + S + + +S
Sbjct: 39 HDFRRPSKFAKDHVRTLNVIHDNYARIITNFLSGYLRTLVQVEVISVEPIAYYEFNNSIS 98
Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
V + + + + + + + L++ +LG I ++ R + VE + +R
Sbjct: 99 NPAVLAVIDFAPLTGSIILEMAPPVAYALIDRILGGKGLPIERV--REFTEVEIAIIERI 156
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
I Q+ ++ + E P LE + +NE V I + I V
Sbjct: 157 IIQLVNLMREPWENVVELKPRLEKIET--NAQFAQIVSANETVALITLGAKIGEVEGMIN 214
Query: 199 LIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
L IP + + + +++ + +K V + + + D
Sbjct: 215 LCIPHIVVEPIVSKLNTKFWFSSVEKEATKEDKETIQKKIEYTKVPVRAILGRATIQVAD 274
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ L+ G VI + + G I+IT+ I + +
Sbjct: 275 FLELQPGDVITLDSNVNGNLDVLVGDLLKFRGSPGVKKNRNAIKITEVIRREDE 328
>gi|188588470|ref|YP_001920165.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
Alaska E43]
gi|251780168|ref|ZP_04823088.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188498751|gb|ACD51887.1| flagellar motor switch protein FliM [Clostridium botulinum E3 str.
Alaska E43]
gi|243084483|gb|EES50373.1| flagellar motor switch protein FliM [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 331
Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 44/314 (14%), Positives = 105/314 (33%), Gaps = 11/314 (3%)
Query: 1 MRGQSIHKNTSPLHPIL----LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56
+ + T P L K + + + + ++
Sbjct: 17 LSTGELEPETVPKDDEKHKIKLYDFKSPQKFSKDHIRTLELIHDNFARITSNYLTGQIRK 76
Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
+V + + + + IHS + + + + + + + L +++ LLG S
Sbjct: 77 NVKVKIETVEQITYEEFIHSVQNPTIITIFKMPPLTGSIIFETNPQLSFQIIDILLGGSG 136
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ ++ N+ S ++K + ++ + + L SP +E N
Sbjct: 137 DR--KIGNKEFSDIDKNIIRQVTTGMISNLKLAWEDILNVSPEVEGIET--NPAINQTLA 192
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFAR 233
NE V I ++ ++ + IP ++ K QN E +
Sbjct: 193 PNEPVALITFSVEFGEHSTFMNMCIPYLSIEKVLDKLVVQYWFQNDDEALIAESRVKMEE 252
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
++++ + + + D + L G +I ++ + + +E Y + G G
Sbjct: 253 GIQKVDIEVFAELGNTNIIVDDFLKLTKGDIIKLDNKSSSPIKVYVGDEECYYAKPGVTG 312
Query: 294 KNYTIRITDRINFD 307
KN + I D I+ +
Sbjct: 313 KNMGVAILDIIDKE 326
>gi|307945662|ref|ZP_07660998.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4]
gi|307771535|gb|EFO30760.1| flagellar motor switch protein FliM [Roseibium sp. TrichSKD4]
Length = 410
Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 98/303 (32%), Gaps = 4/303 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
++T + L + + + + +V++S S S
Sbjct: 92 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 151
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126
+F ++S + W I ++L+ ++++ LL G T ++ R
Sbjct: 152 VRFGDYLNSIPLPAILGVFKAEEWDGFGMITVESSLIYSIIDVLLGGGRGATAVRVEGRP 211
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+T+E L ++ ++ I Q + +E + + +
Sbjct: 212 YTTIETNLVQQMVSLILQDAEQAFAPLSPVHFTMERLET--NPRFAAISRPANAAILVEL 269
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +E+ + +++P TL + L + + A + + V +D
Sbjct: 270 RIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEVHAAEVEVDAV 329
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ L V+ L +GQ + F L + +G+ I++T +
Sbjct: 330 LYETHLPLGRVMNLDVGQTLVFDIEPTDPVTLKCGNVPLTEGTMGKAEDAIAIQVTKNLR 389
Query: 306 FDQ 308
+
Sbjct: 390 KPK 392
>gi|34557954|ref|NP_907769.1| flagellar motor switch protein FliM [Wolinella succinogenes DSM
1740]
gi|34483672|emb|CAE10669.1| FLAGELLAR MOTOR SWITCH PROTEIN FLIM [Wolinella succinogenes]
Length = 354
Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 98/304 (32%), Gaps = 6/304 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ L K + + + L M V+I S + +
Sbjct: 37 VTLYDFKRPNRVSKEQLRAFRGIHDKMARNLSSQISAIMRSIVEIQLHSVDQMTYGEFLM 96
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ S+ + + ++ +++ LLG + R S +E L
Sbjct: 97 SLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYE--ATREFSDIELNLL 154
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L + + E P+++ + NE V + M + I + +
Sbjct: 155 DTILRQMMQNLKEAWAPVAEIFPSVDAKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 212
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
L P +L S + + VNI + L
Sbjct: 213 MMNLCYPVISLESVLSRLASRDLMLSETSSKKSRNRELQALLGGAAVNISAVLGGTSLDL 272
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
K+V+ L +G ++ I++ +G+E Y +G T++I + I ++ +K
Sbjct: 273 KEVLELGVGDIVRLDRPADDTVIVNVDGREKYIATIGLQRYRKTVKIKEVIKTEKDQVKE 332
Query: 314 FLHK 317
L
Sbjct: 333 ILEM 336
>gi|90021820|ref|YP_527647.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
gi|89951420|gb|ABD81435.1| flagellar motor switch protein FliM [Saccharophagus degradans 2-40]
Length = 333
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 42/299 (14%), Positives = 100/299 (33%), Gaps = 12/299 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
R+ + + ++ + D+S Q
Sbjct: 32 GVRAYDLTSQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVSVGGIQIQ 85
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +H+ + I LV L++N G ++ R +
Sbjct: 86 KFGEYVHTLYVPTSLNMVKFRPLRGTALIILDAKLVFKLVDNFFGGDGR-HAKIEGREFT 144
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ + + Q+ L + + E +E V ++
Sbjct: 145 PTELRVVQMVLEQVFIDLKEAWKAVKAID--FEYINSEVNPSMANIVSPSEVVVVSTFHV 202
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++ + +P + + + Q+ ++ + + + + V+++ +
Sbjct: 203 ELDGGGGELHITMPYSMVEPIREVLDAGLQSDTDERDDRWVRALQEDVMEARVDLEADLV 262
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++ TL+D+V L+ G +IP E IL+ANG ++ +LG++ N +RI ++
Sbjct: 263 RREVTLRDIVDLREGDIIPITMPEYN--ILTANGVPMFKTQLGQLNDNLAMRILGFVDR 319
>gi|86750893|ref|YP_487389.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
HaA2]
gi|86573921|gb|ABD08478.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
HaA2]
Length = 401
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 105/295 (35%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +FS
Sbjct: 88 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFSDY 147
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V W + ++L+ ++++ LLG + ++ R +T+E
Sbjct: 148 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAAIRIEGRPYTTIET 207
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q + +++ + + +++ +E+
Sbjct: 208 NLVKRLLEVVLADAEQAFRPLSPVAFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 265
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + + + + + A + Q ++++D + +
Sbjct: 266 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIGQADISVDAVLYEAEV 325
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+ ++ L++G +P R + + +GRVG IR+T +
Sbjct: 326 PLRQLMALQVGDTLPLDLRADALVAVRCGSVTLTEGRMGRVGDRVAIRVTKPLRK 380
>gi|304316897|ref|YP_003852042.1| flagellar motor switch protein FliM [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778399|gb|ADL68958.1| flagellar motor switch protein FliM [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 329
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 39/310 (12%), Positives = 94/310 (30%), Gaps = 11/310 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++ P + K + + + + V +
Sbjct: 27 IKESQQETRIKPYDFRRPNKF------SKEQLRTLQMIFENMSRSFTTFLSGYLRTLVQV 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S S + + +S + + +NN T+++ +LG
Sbjct: 81 SIVSVEQITYYEFSNSLTNPVFIAVIDAKPLDGPIILEFNNNTTFTIIDKILGGIGTADT 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
R + +E L R Q+ ++ E +P + + + NE
Sbjct: 141 V--ERDYTEIEMGLLSRITTQLLPLIKDAWINVIELNPEITRIET--NSQFSQIISPNET 196
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLN 239
+ M++ I + +P T++ + + S + + I K
Sbjct: 197 IALCTMSLKINDNEGLINFCLPHITIVPILPLLTTKTWFSNAEKQSCDIGIIKDKISNTY 256
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + I + K T++D++ G ++ + K + N + + G K Y ++
Sbjct: 257 IPLKAVIGMSKITVRDLLNFNKGDILEINKKYKDPIEIKINDETKFLGVPGIKNKKYCVQ 316
Query: 300 ITDRINFDQK 309
IT+ +
Sbjct: 317 ITEICSEGDD 326
>gi|39936958|ref|NP_949234.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
CGA009]
gi|192292786|ref|YP_001993391.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
TIE-1]
gi|39650815|emb|CAE29338.1| possible flagellar motor switch protein FliM [Rhodopseudomonas
palustris CGA009]
gi|192286535|gb|ACF02916.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
TIE-1]
Length = 400
Score = 224 bits (572), Expect = 9e-57, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 104/295 (35%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 87 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V W + ++L+ ++++ LLG + ++ R +T+E
Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q S +++ + + +++ +E+
Sbjct: 207 NLVKRLLEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + + + + + A + Q ++++D + +
Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIVQADISVDAVLYEAEL 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+ ++ L++G +P R + + +GRVG IR+T +
Sbjct: 325 PLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEGRMGRVGDRVAIRVTKPLRK 379
>gi|237753388|ref|ZP_04583868.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
BAA-430]
gi|229375655|gb|EEO25746.1| flagellar motor switch protein flim [Helicobacter winghamensis ATCC
BAA-430]
Length = 352
Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 96/292 (32%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+I S + + S F+ S
Sbjct: 50 SKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + ++ +++ LLG + R S +E L + Q+ L
Sbjct: 110 MKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLLDTILRQMMQNLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + E P ++ + NE V + M + I + + L P +L
Sbjct: 168 EAWAPITEIFPTVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSGMMNLCYPVISLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
S + + VN+ + K ++ +++ L++G ++
Sbjct: 226 SVLSRLASRDIMLSETSAKKSRNKELQALLGGAKVNVAAVLGETKLSMHEILDLEVGDIV 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
I++ +G+E + +G TI + + I ++ +K L
Sbjct: 286 RLDRPADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKEILEM 337
>gi|170747253|ref|YP_001753513.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
JCM 2831]
gi|170653775|gb|ACB22830.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
JCM 2831]
Length = 404
Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 101/285 (35%), Gaps = 4/285 (1%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
+ + + L + +V+++ + S +F +++ +
Sbjct: 110 ERLPMLEIVFDRMIRLLSTSLRNLFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFRAE 169
Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
W ++ + +NL + LLG + +L R + +E L +R + + L
Sbjct: 170 QWENSGLVTVDSNLAYATFDLLLGGKRGGSSSRLDGRPFTAIEMTLVRRLVEIVLGDLEM 229
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
S ++ + T I++ + ++ ++ P T+
Sbjct: 230 SFQPLSPVSFGIDRIET--NPRFATITRPGNAAILISLRLDVDGRGGMLQILFPYATIEP 287
Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ S + + A + +Q +V +D ++ LK V++LK+G+ + F
Sbjct: 288 IRELLTQSFMGEKLGRDHVWEGHLATEIWQADVTMDAVLHEMMLPLKQVMSLKVGETLMF 347
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ + + +GRV + +++T + + +++
Sbjct: 348 DAKPSDLITVRCGDWALTQGRIGRVDGHIAVQVTRPLRRSRTTIQ 392
>gi|242309556|ref|ZP_04808711.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
98-5489]
gi|239524127|gb|EEQ63993.1| flagellar motor switch protein FliM [Helicobacter pullorum MIT
98-5489]
Length = 352
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 47/304 (15%), Positives = 99/304 (32%), Gaps = 6/304 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ L K + + + L M V+I S + +
Sbjct: 38 VTLYDFKRPNRVSKEQLRAFRGIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLM 97
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ S+ + + ++ +++ LLG + R S +E L
Sbjct: 98 SLPSPTSFNVFSMKPLDGTGVLEINPSIAFPMIDRLLGGKGDPYEST--REFSDIELNLL 155
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L + + E PN++ + NE V + M + I + +
Sbjct: 156 DTILRQMMQNLKEAWAPITEIFPNVDVKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 213
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
L P +L S + + VN+ + K TL
Sbjct: 214 MMNLCYPVISLESVLSRLASRDIMLSETSSKKSRNKELQALLGGAKVNVTAMLGETKLTL 273
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
++++ L+ G ++ I++ +G+E + +G TI + + I ++ +K
Sbjct: 274 REILELESGDIVRLDRPADDTVIINVDGREKFLASIGLHRYRKTIEVKEMIKTEKDQVKE 333
Query: 314 FLHK 317
L
Sbjct: 334 ILEM 337
>gi|331006682|ref|ZP_08329960.1| Flagellar motor switch protein FliM [gamma proteobacterium
IMCC1989]
gi|330419514|gb|EGG93902.1| Flagellar motor switch protein FliM [gamma proteobacterium
IMCC1989]
Length = 340
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 12/308 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G + S R+ + + ++ + D+S
Sbjct: 25 SGDTSAGGVSSYDLTTQDRIVRG------RMPTLEMINERFARYTRISMFNLLRRTADVS 78
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
KF +H+ + + LV L++N G +
Sbjct: 79 VGGINIQKFGEYVHTLYVPTSLNMVKFRPLRGTALVVFDAKLVFKLVDNFFGGDGR-HAK 137
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E ++ + + Q + + E +E V
Sbjct: 138 IEGREFTPTELRVVRMVLEQAFIDMKEAWRAVLPID--FEHVNSEVNPSMANIVSPSEVV 195
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
+ ++ ++ + IP + + + Q+ S+ + + ++ Q NV
Sbjct: 196 VVSSFHVELDGGGGEMHITIPYSMIEPIREMLDAGLQSDSDERDDRWVNSLREDIMQANV 255
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+DT K LKD+V LK G VIP I +ANG ++ ++G+ N+ +++
Sbjct: 256 RLDTNFVQSKILLKDIVDLKEGDVIPIELP--EEYITNANGVPMFKVDIGQSNGNFALKV 313
Query: 301 TDRINFDQ 308
+ I +
Sbjct: 314 NEVIERTK 321
>gi|254504876|ref|ZP_05117027.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11]
gi|222440947|gb|EEE47626.1| flagellar motor switch protein FliM [Labrenzia alexandrii DFL-11]
Length = 412
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 41/303 (13%), Positives = 101/303 (33%), Gaps = 4/303 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
++T + L + + + + +V++S S S
Sbjct: 95 EDTIAGDQSGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSISS 154
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL-GASHETIPQLYNRS 126
+F ++S + + W I ++L+ ++++ LL G T ++ R
Sbjct: 155 VRFGDYLNSIPLPAILGVFKVEEWDGFGLITVESSLIYSIIDVLLGGGRGTTAARVEGRP 214
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+T+E L ++ + I Q + NLE + + +
Sbjct: 215 YTTIETNLVQQMVQLILQDAEQAFAPLSPVHFNLERLET--NPRFAAISRPANAAILVEL 272
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +E+ + +++P TL + L + + A + + + +D
Sbjct: 273 RIDMEDRGGTVEIMMPYATLEPIRDLLLQMFMGEKFGRDPIWEGHLATEIHAAEIEVDAV 332
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ L V++L +GQ + F ++ + LG+ + IR+ +
Sbjct: 333 LYETYLPLGRVLSLDVGQTLVFDVAPTDPVLVKCGNIPLTEGTLGKTEDSIAIRVAKNLR 392
Query: 306 FDQ 308
+
Sbjct: 393 KPK 395
>gi|316932826|ref|YP_004107808.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
DX-1]
gi|315600540|gb|ADU43075.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
DX-1]
Length = 400
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 104/295 (35%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 87 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V W + ++L+ ++++ LLG + ++ R +T+E
Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q S +++ + + +++ +E+
Sbjct: 207 NLVKRLLEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + + + + + A + Q ++++D + +
Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEIVQADISVDAVLYEAEL 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L+ ++ L++G +P R + + +GRVG IR+T +
Sbjct: 325 PLRQLMALQVGDTLPLELRADATVAVRCGSVVLTEGRMGRVGDRVAIRVTKPLRR 379
>gi|188582489|ref|YP_001925934.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
gi|179345987|gb|ACB81399.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
Length = 405
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 97/285 (34%), Gaps = 4/285 (1%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
+ + + L + +V+++ + S +F +++ +
Sbjct: 111 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 170
Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
SW + + L + ++ LLG + +L R +T+E L +R + I L
Sbjct: 171 SWEGSGLVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEM 230
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
++ + T I + + ++ ++ P T+
Sbjct: 231 SFQPLSPVRFGIDRIET--NPRFATITRPGNAAILITLKLDMDGRGGGMQILFPYATVEP 288
Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ S + + + A + +Q +V ++ ++ LK V+ LK+G + F
Sbjct: 289 IRDLLMQSFMGERLGRDQVWESHLATEIWQADVEMEAVLHEVTLPLKRVLNLKVGDTLMF 348
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ + + +GR+ +++ + + +L+
Sbjct: 349 DRKPSDLITVRCGDWALTQGRIGRIDDAIAVQVARPLRQSRTTLQ 393
>gi|78776906|ref|YP_393221.1| flagellar motor switch protein FliM [Sulfurimonas denitrificans DSM
1251]
gi|78497446|gb|ABB43986.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
switch protein FliM [Sulfurimonas denitrificans DSM
1251]
Length = 372
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 6/303 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ L K + + + L M V+I S + +
Sbjct: 41 VTLYDFKRPNRVSKEQLRAFKGIHDKMARSLSSQISSIMRSIVEIQLHSVDQMTYGEFLM 100
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ S+ + I + ++ +L+ LLG E +R S +E L
Sbjct: 101 SLPNPTSFNVFSMKPLEGSGVIEINPSIAFPMLDRLLGGKGEPFD--ASREFSDIELSLF 158
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ + + + L E PN+E + NE V + M + I +
Sbjct: 159 ETILRVMMSTLKDAWGPVMEIFPNIESKESSPNV--VQIVAQNEIVVMVVMEIIIGQSSG 216
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ P L S + + V I+ + + TL
Sbjct: 217 MMNICYPVIALEPVLPKLASRDLMLNETSTKKSRNTELHVLLGGAKVGIEAMLGNAELTL 276
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+DV+ L+ G ++ + +GK+ + ++G ++++T+ I+ ++ ++K
Sbjct: 277 RDVLDLQAGDIVRLTSPADDIVTICVDGKDRFRGKIGLRRFRKSVQVTEIIDTERDAVKR 336
Query: 314 FLH 316
L
Sbjct: 337 ALE 339
>gi|222100881|ref|YP_002535449.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
4359]
gi|221573271|gb|ACM24083.1| Flagellar motor switch protein FliM [Thermotoga neapolitana DSM
4359]
Length = 328
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 46/301 (15%), Positives = 99/301 (32%), Gaps = 15/301 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ K P ++ K + + + + L ++ VD+
Sbjct: 30 EEGEKKVKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI- 82
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + I S + + + +L T+L+ ++G
Sbjct: 83 SIDQLTYEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTILDIIMGGPG---DNPP 139
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
NR+ + +E + +R + I +L Q S Q P++E+ + NE V
Sbjct: 140 NRTPTDIETSIMRREVTNILTLLAQAWSDFQYFIPSIENIET--NPQFVQIVPPNEIVLL 197
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNV 240
+ +++ S + P L + + E+ ++ + + +
Sbjct: 198 VTASVSWGEFTSFINVCWPFSLLEPFLEKLSNRFWMMGRKPERIEERVEELKVASQSVPL 257
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ I TL++V+ L+ G VI K + GK + G+ Y ++I
Sbjct: 258 TVQAVIGEAWLTLREVLNLQEGDVIRLNTHYKDEIRIDVEGKPKFRGIPGKYKGKYAVKI 317
Query: 301 T 301
T
Sbjct: 318 T 318
>gi|258511384|ref|YP_003184818.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478110|gb|ACV58429.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 331
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 18/314 (5%)
Query: 10 TSPLHPILLAR-----------LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
T + P R + K ++ + + + L ++
Sbjct: 19 TGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMHEHFCRLLTSQLSGQLRSVP 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
I S + I S V + + + +V +L+ +G
Sbjct: 79 QIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQVVFAMLDKYMGGDSAG 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R L+ +E L +R + ++L + + + P + N
Sbjct: 139 PYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSLE--SNPQFLQLTTPN 194
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLI-DPFARKT 235
E V + +++ + L IP T+ + + + + D K
Sbjct: 195 ETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQSGRRQVNDELRAKL 254
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V++ + + T+++V+ L G I + A++ +G+ + +G+ +
Sbjct: 255 LSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRV 314
Query: 296 YTIRITDRINFDQK 309
Y ++I + D
Sbjct: 315 YAVKIVGQWEADAD 328
>gi|296103632|ref|YP_003613778.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058091|gb|ADF62829.1| Flagellar motor switch protein fliM [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 330
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 10/301 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
P P R+ + + + + + DI+ + +
Sbjct: 31 DAGIKPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAGNIK 84
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+ + + L+ + S LV ++NL G + R
Sbjct: 85 IQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGLVFMAVDNLFGGDGRFPTKADGRE 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E+++ R ++ S+ + I N N+ V T
Sbjct: 145 FTPTEQRVIHRMLSMAREAYEFAWSSIYKIKTEYIRSE-IQVKFTNITSSPNDVVVTTPF 203
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ I + F + IP T+ + + + S ++ A + + + + R
Sbjct: 204 SVEIGSHRGEFNICIPFSTIEPLRELLSNPPMDNSRHEDSHWRGLLASQMRETELELTAR 263
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
T L V+ +K G +I + S G +++ G V Y +++ I
Sbjct: 264 FADIGTRLSRVMQMKKGDIIALDK--QEFIEASVGGVPVFTARYGAVNNQYALKVEQMIQ 321
Query: 306 F 306
Sbjct: 322 P 322
>gi|281411906|ref|YP_003345985.1| flagellar motor switch protein FliM [Thermotoga naphthophila
RKU-10]
gi|281373009|gb|ADA66571.1| flagellar motor switch protein FliM [Thermotoga naphthophila
RKU-10]
Length = 328
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 99/297 (33%), Gaps = 15/297 (5%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K P ++ K + + + + L ++ VD+ S
Sbjct: 34 KKVKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQ 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ I S + + + +L T+L+ ++G NR
Sbjct: 87 LTYEEFIRSVMIPSFIVIFTGDIFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPP 143
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E + ++ + + +L Q S Q P++E+ + NE V + +
Sbjct: 144 TEIETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTAS 201
Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ S + P L + + E+ I+ + + ++ V +
Sbjct: 202 VSWGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPERVEERIEELKKASQKVPVTVQA 261
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
I + LK+++ L++G VI K + G+ + G Y +++T
Sbjct: 262 VIGETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318
>gi|91976164|ref|YP_568823.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisB5]
gi|91682620|gb|ABE38922.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisB5]
Length = 400
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 103/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 87 ENSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V W + ++L+ ++++ LLG + ++ R +T+E
Sbjct: 147 MNSIPLPAVLCVFKAEEWQNFGLATVDSSLIYSMIDVLLGGRRGQAALRIEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q + +++ + + +++ +E+
Sbjct: 207 NLVKRLLQVVLADAEQAFRPLSPVAFSIDRLET--NPRFAAISRPANAAILVRLHIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + + + + + A + Q +++D + +
Sbjct: 265 RGGNIELLLPYATIEPIRGVLMQMFMGEKFGRDQVWEGHLATEVVQAEISVDAVLYEAEV 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++ L++G +P R + + +GRVG IR+T +
Sbjct: 325 PLKQLMALQVGDTLPLDLRADALVAVRCGSVTLTEGRMGRVGDRVAIRVTKPLRR 379
>gi|149194333|ref|ZP_01871430.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
gi|149135508|gb|EDM23987.1| flagellar motor switch protein M [Caminibacter mediatlanticus TB-2]
Length = 356
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 45/304 (14%), Positives = 97/304 (31%), Gaps = 6/304 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ L K + ++ + L M V+I S + +
Sbjct: 39 VTLYDFKRPNRVSKEQLRSIRAIHDKMVRNLASDISSLMRSIVEIHLHSVDQMTYGEFLM 98
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ SL I + ++V +++ LLG R + +E L
Sbjct: 99 SLPSPTSFNVFSLKPLDGKGVIELNPSIVFPMIDRLLGGPGLPFENT--REFTDIELNLL 156
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ + I+ + + + E P +E + NE V I M + I +
Sbjct: 157 DQILRTITQNMKEAWAPIMEMYPVIEAKESSPNV--VQIVAQNEIVVMIVMEIVIGQTSG 214
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ P T+ S + + V ++ + T+
Sbjct: 215 MMNICYPVITIESLLPKLASRDLMLSETSSRKSRNKELRALLGGAKVELEAVLGYANLTM 274
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
++++ L +G +I ++ +G+E + + G I+I + + + +K
Sbjct: 275 QEILDLVVGDIIKLNRPADDTVVVKVDGREKFIADFGIKRFRRAIKIREILKTEHDEVKE 334
Query: 314 FLHK 317
L K
Sbjct: 335 ILSK 338
>gi|187778682|ref|ZP_02995155.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
15579]
gi|187772307|gb|EDU36109.1| hypothetical protein CLOSPO_02277 [Clostridium sporogenes ATCC
15579]
Length = 331
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 104/309 (33%), Gaps = 13/309 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ + P + K + + Y + + ++ +V +
Sbjct: 30 EEEKQKVKPYDFKRPQKF------SKDHIRTLELIHDNYARIISNYLTAQVRSNVKVKIE 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S Q + IHS + + + + + + V +++ LLG + ++
Sbjct: 84 SVQQITYEEFIHSVPNPTILTIFKMPPLNGSVLFETNPQFVFQMIDVLLGGNGNGNYKM- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + ++K + K+ + L E +E N E V
Sbjct: 143 -REFTDIDKNIMKQINTGLITNLKLAWEDVMEVDVEIESLET--NPALNQTLAPTEPVAL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNV 240
I ++ + + + IP ++ K + E E+ + +++
Sbjct: 200 ITFSVEMGKSNTFINICIPYLSIEKVLEKLVVQYWFRENDEESIEESSSKIKERINIVSM 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T++D + L +G V+ + + L + Y + G +GKN ++I
Sbjct: 260 ELTAELGRTSVTVEDFLRLSVGDVVALDTKTEEPVHLLIEKEPGYYAKPGVIGKNIGLQI 319
Query: 301 TDRINFDQK 309
D+I+ D +
Sbjct: 320 LDQIDKDVE 328
>gi|163852467|ref|YP_001640510.1| flagellar motor switch protein FliM [Methylobacterium extorquens
PA1]
gi|218531223|ref|YP_002422039.1| flagellar motor switch protein FliM [Methylobacterium
chloromethanicum CM4]
gi|240139804|ref|YP_002964281.1| flagellar motor switch protein FliM [Methylobacterium extorquens
AM1]
gi|254562219|ref|YP_003069314.1| flagellar motor switch protein FliM [Methylobacterium extorquens
DM4]
gi|163664072|gb|ABY31439.1| flagellar motor switch protein FliM [Methylobacterium extorquens
PA1]
gi|218523526|gb|ACK84111.1| flagellar motor switch protein FliM [Methylobacterium
chloromethanicum CM4]
gi|240009778|gb|ACS41004.1| flagellar motor switch protein FliM [Methylobacterium extorquens
AM1]
gi|254269497|emb|CAX25463.1| flagellar motor switch protein FliM [Methylobacterium extorquens
DM4]
Length = 406
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 4/285 (1%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
+ + + L + +V+++ + S +F +++ +
Sbjct: 112 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 171
Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+W + + L + ++ LLG + +L R +T+E L +R + I L
Sbjct: 172 AWEGSGLVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMSLVRRLVEIILTDLEL 231
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
++ + T I + + ++ ++ P T+
Sbjct: 232 SFQPLSPVRFGIDRIET--NPRFATITRPGNAAILITLKLDMDGRGGGMQILFPYATVEP 289
Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ S + + + A + +Q +V+++ ++ LK V+ LK+G + F
Sbjct: 290 IRDLLMQSFMGERLGRDQVWESHLATEIWQADVDMEAVLHEVTLPLKRVLNLKVGDTLMF 349
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ + + +GR+ ++I + + +L+
Sbjct: 350 DRKPSDLITVRCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTLQ 394
>gi|254519440|ref|ZP_05131496.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
gi|226913189|gb|EEH98390.1| flagellar motor switch protein FliM [Clostridium sp. 7_2_43FAA]
Length = 331
Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 7/283 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + + ++ V + S + + +HS + +
Sbjct: 48 SKDHIRTLEMVHDAFARIISNYLSGQLRKHVKVDIQSVEQITYEEFVHSIANPTILTIFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + +L+ LLG + + + + S ++K + +++ L
Sbjct: 108 MPPLQGNILLEMNPQFSFQILDILLGGTGDRDEK--AKEFSEIDKNILANITSEMIKSLI 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
E P E N NE V ++ + + + L IP ++
Sbjct: 166 LAWDGILEVKPEFEGLET--NPSANQTLAPNEPVALLSFLVELGKSTTYMNLCIPYLSVE 223
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + ++ + + + VN+ + + T+ D + L G V
Sbjct: 224 KVLDKLVVQYWFKTDESELEDEAREKLKKGLDPVKVNMHVELGKTEITVDDFLELVNGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ + + +E + + G VGKN I++ D ++ D
Sbjct: 284 LVLNSQYSDPVRVFVENEECFIAKPGIVGKNMGIQLLDILDKD 326
>gi|218288306|ref|ZP_03492605.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius LAA1]
gi|218241665|gb|EED08838.1| flagellar motor switch protein FliM [Alicyclobacillus
acidocaldarius LAA1]
Length = 331
Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 41/314 (13%), Positives = 101/314 (32%), Gaps = 18/314 (5%)
Query: 10 TSPLHPILLAR-----------LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
T + P R + K ++ + + + L ++
Sbjct: 19 TGEIDPAAEQRANAHPRVRVYDFRRAMRFSKDHLRVLRRMYEHFCRLLTSQLSGQLRSVP 78
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
I S + I S V + + + +V +L+ +G
Sbjct: 79 QIQVESVDQVPYDEFIRSIPPLTVLQVYDMHPLEGRMVMEMNPQVVFAMLDKYMGGDSAG 138
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R L+ +E L +R + ++L + + + P + N
Sbjct: 139 PYRV--RELTDIEVSLFRRLFENVPSILAEAWKSVIDLDPQFVSLE--SNPQFLQLTTPN 194
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLI-DPFARKT 235
E V + +++ + L IP T+ + + + + D K
Sbjct: 195 ETVLVVTISVRVGETTGLINLCIPHVTIEPVLSKLSNRYYMDPAFQSGRRQVNDELRAKL 254
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V++ + + T+++V+ L G I + A++ +G+ + +G+ +
Sbjct: 255 LSVPVDVRVEVGQAELTVREVLDLCEGDTIVLRQTIRDPALVYVDGRPAFWGSVGKRNRV 314
Query: 296 YTIRITDRINFDQK 309
Y ++I + D
Sbjct: 315 YAVKIVGQWEADAD 328
>gi|85715055|ref|ZP_01046040.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85698252|gb|EAQ36124.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 400
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 102/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S S +F
Sbjct: 87 DNSGIRAIIDSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDRITSVRFGDY 146
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S V S W + ++L+ ++++ LLG +T ++ R +T+E
Sbjct: 147 LNSIPLPAVLSVFKAEEWENFGLAMVDSSLIYSMIDVLLGGRRGQTSLRIEGRPYTTIET 206
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L KR + + A Q S +++ + + + + +E+
Sbjct: 207 NLVKRLVEVVLADAEQAFRPLSPVSFSIDRLET--NPRFAAITRPANAAILVRLRIDMED 264
Query: 193 VASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ L++P T+ + L + + A + Q + +D + +
Sbjct: 265 RGGTIELLLPYATIEPIRNVLLQMFMGEKFGRDPIWESHLATEIAQAQIAVDAVLYEAEI 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK ++TLK+G + R + + +GRVG IR++ +
Sbjct: 325 PLKQLMTLKVGDTLALEMRPDASVAVRCGSVTLTEGRMGRVGDRVAIRVSRNLRK 379
>gi|78357750|ref|YP_389199.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220155|gb|ABB39504.1| flagellar motor switch protein FliM [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 326
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 41/289 (14%), Positives = 87/289 (30%), Gaps = 10/289 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + V+++ S KF
Sbjct: 38 FDLANQDRIIRG------RMPVLEIVNDRFARLCTNALSNAVRKRVELNPISIDMTKFGD 91
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ S + + N I + LV L+EN G + ++ R + +E+
Sbjct: 92 FMRSLPVPTSINIFKMEPLRGNAIIVVDSRLVFALVENFFGGAGSQP-KIEGREFTRIEQ 150
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
+ R I + + E + L + ++ V I + +E+
Sbjct: 151 AIVDRVIKIALDNMEESWRPVHEVNLELVR--SEINPQFAAIVPPSDVVVVITFEVELES 208
Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
S V+ +P T+ S Q + + + + V + R K
Sbjct: 209 AIGSLVMCLPYATIEPIRSKLHASFQTERLEVDHAWVARLKERLLETPVEMKIRFGETKI 268
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
T ++ LK+G V+ + G + G V N ++
Sbjct: 269 TGNQLLRLKVGDVLLLDTDTDDLLEGTVEGVRKFWGISGIVKANKAFQV 317
>gi|315498450|ref|YP_004087254.1| flagellar motor switch protein flim [Asticcacaulis excentricus CB
48]
gi|315416462|gb|ADU13103.1| flagellar motor switch protein FliM [Asticcacaulis excentricus CB
48]
Length = 387
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 38/307 (12%), Positives = 105/307 (34%), Gaps = 5/307 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 83 ERSGIRAIINSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 142
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 143 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 202
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + I + NL+ + + + + +E+
Sbjct: 203 VLVQRMVEVILHDAKMAFEPLTPVNFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 260
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ ++
Sbjct: 261 RGGRVELLLPYATLEPIRKMLLQQFMGEKFGRDNIWESHLATELWTTQMEVRAVLDEQQM 320
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKS 310
L +V+ LK+G+ I + L + + ++GR G N +R+ + ++
Sbjct: 321 PLSEVLNLKVGETIVLNATADSPIELRCGTIPLTNGKMGRKGHNIAVRVDHPLAASTKRR 380
Query: 311 LKNFLHK 317
L K
Sbjct: 381 LTQIRKK 387
>gi|295097219|emb|CBK86309.1| flagellar motor switch protein FliM [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 330
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 38/304 (12%), Positives = 94/304 (30%), Gaps = 10/304 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G P P R+ + + + + + DI
Sbjct: 25 LHGSMGDAGIKPYDPNTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSSDI 78
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + + + + L+ + S+ LV ++NL G
Sbjct: 79 TAGNIKIQPYHEFARNLPVPTNLNLLHLNPLRGTALMAFSSGLVFMAVDNLFGGDGRFPT 138
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R + E+++ R + + + I N N+
Sbjct: 139 KADGREFTPTEQRVIHRMLTMAREAYEFAWGSIYKIKTEYIRSE-IQVKFTNITSSPNDV 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLN 239
V T ++ I + F + IP T+ + + + S ++ + A + +
Sbjct: 198 VVTTPFSVEIGSHRGEFNICIPFSTIEPLRELLSNPPMDNSRHEDSEWRSMLASQMRETE 257
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + T L +V+ +K G +IP + + +++ + G V Y ++
Sbjct: 258 LELVAQFADINTRLSNVMKMKKGDIIPLDK--QEFIEANVGSVPVFTAKYGSVNNQYALK 315
Query: 300 ITDR 303
+
Sbjct: 316 VDRM 319
>gi|157164910|ref|YP_001467212.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
gi|112799933|gb|EAT97277.1| flagellar motor switch protein FliM [Campylobacter concisus 13826]
Length = 367
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 48/303 (15%), Positives = 100/303 (33%), Gaps = 6/303 (1%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
++ K + + + L M V++ S + + S
Sbjct: 40 IIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVELRLHSVDQMTYGEFLMS 99
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
F+ S+ N + + ++ +++ LLG + E NR L+ +E L
Sbjct: 100 LPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGENFE--ANRELTDIEVNLLD 157
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ I L + S + PN+E + NE V + M + + +
Sbjct: 158 AVLRMIMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGGSSGM 215
Query: 197 FVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
L P L + + + + V + + ++
Sbjct: 216 INLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSVN 275
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ + LK G ++ AI+ + KE++ E+G +I+I I D+ +K+
Sbjct: 276 EFLNLKEGDILRLDRGADDKAIVCIDKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKHI 335
Query: 315 LHK 317
L K
Sbjct: 336 LEK 338
>gi|57168742|ref|ZP_00367873.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
gi|305432516|ref|ZP_07401678.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
gi|57019789|gb|EAL56472.1| flagellar motor switch protein FliM [Campylobacter coli RM2228]
gi|304444555|gb|EFM37206.1| flagellar motor switch protein FliM [Campylobacter coli JV20]
Length = 358
Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+ S + + S F+ S
Sbjct: 49 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG ++ +R L+ +E L + I L
Sbjct: 109 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ +T E P++E + NE V + M + I N + + P L
Sbjct: 167 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 224
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + + + + LK G ++
Sbjct: 225 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
AI+S + K+++ ++G +I+I + I D+ +K L K
Sbjct: 285 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 336
>gi|259907613|ref|YP_002647969.1| flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
gi|224963235|emb|CAX54719.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae Ep1/96]
gi|310764881|gb|ADP09831.1| Flagellar motor switch protein FliM [Erwinia sp. Ejp617]
Length = 332
Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
S+ + P P R+ + + + + + DI+
Sbjct: 30 GSVTREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + + + L+ + S +V ++NL G +
Sbjct: 84 NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ R + ST + I N N+ V T
Sbjct: 144 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 202
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
++ I + F + IP ++ + + S + + + + +
Sbjct: 203 TPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 262
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
T L +V+ K G VIP S G +++ + G V + +++
Sbjct: 263 VATFPDVPTRLTNVMKFKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 320
Query: 303 RINF 306
I
Sbjct: 321 MIPS 324
>gi|283477455|emb|CAY73371.1| Flagellar motor switch protein FliM [Erwinia pyrifoliae DSM 12163]
Length = 334
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
S+ + P P R+ + + + + + DI+
Sbjct: 32 GSVTREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + + + L+ + S +V ++NL G +
Sbjct: 86 NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 145
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ R + ST + I N N+ V T
Sbjct: 146 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 204
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
++ I + F + IP ++ + + S + + + + +
Sbjct: 205 TPFSIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 264
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
T L +V+ K G VIP S G +++ + G V + +++
Sbjct: 265 VATFPDVPTRLTNVMKFKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 322
Query: 303 RINF 306
I
Sbjct: 323 MIPS 326
>gi|292489155|ref|YP_003532042.1| flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
gi|292900273|ref|YP_003539642.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291200121|emb|CBJ47247.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291554589|emb|CBA22223.1| Flagellar motor switch protein FliM [Erwinia amylovora CFBP1430]
gi|312173313|emb|CBX81568.1| Flagellar motor switch protein FliM [Erwinia amylovora ATCC
BAA-2158]
Length = 334
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 41/304 (13%), Positives = 90/304 (29%), Gaps = 10/304 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
S+ + P P R+ + + + + + DI+
Sbjct: 32 GSVAREAQPYDPHTQRRVI------RERLHSLEIINERFARQFRMGLFNLLRRSPDITAG 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + + + L+ + S +V ++NL G +
Sbjct: 86 NIKIQPYHEFARNLPVPTNLNLLHLNPLRGTSLMAFSPGVVFMAVDNLFGGDGRFPTKAD 145
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + E+++ R + ST + I N N+ V T
Sbjct: 146 GREFTPTEQRVIHRMLTMAQEAYEFAWSTIFKIKTEYIRSE-IQVKFTNITSSPNDVVVT 204
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNI 242
+ I + F + IP ++ + + S + + + + +
Sbjct: 205 TPFFIEIGSHQGEFNICIPFSSIEPLRELLSNPPMENSGQEDTQWRGLLVSQMRETELEL 264
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
T L +V+ LK G VIP S G +++ + G V + +++
Sbjct: 265 VATFPDLPTRLTNVMKLKKGDVIPLDKP--ELIAASVGGVPVFTAKYGSVNNQFALKVEQ 322
Query: 303 RINF 306
I
Sbjct: 323 MIPS 326
>gi|169831883|ref|YP_001717865.1| flagellar motor switch protein FliM [Candidatus Desulforudis
audaxviator MP104C]
gi|169638727|gb|ACA60233.1| flagellar motor switch protein FliM [Candidatus Desulforudis
audaxviator MP104C]
Length = 332
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 97/301 (32%), Gaps = 8/301 (2%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
P L K + ++ Y + L + + + S F +
Sbjct: 35 PYKLYDFRRPNKFSKEQLRTLQTVHEGYARILSNFLSGYLRSTIVVRVASVDQFTFDDFV 94
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
S V + +L + + + +++ L G E ++ R L+ +E +
Sbjct: 95 RSVPIPTVLTIITLKPLKGMAVMETNPQFLFPIIDLLFGGPGEPPKRV--RELTDIELSV 152
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
++ ++ P +E + + +E V I + + A
Sbjct: 153 VRKLNKKLLENFQLAWQDIYRMEPEIESVET--NPRLHQIISPSEIVAVITLTAVVGATA 210
Query: 195 -SSFVLIIPQETLLKTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ +P L + S + + + V + + +
Sbjct: 211 RGLINICLPHIMLDPVLMHLSSFYRHVHGALVPDGTEGKRMEYWIERAPVELSAVVGESE 270
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
T++D++ L++G V+P R L + + + + G +G+ +++T + ++
Sbjct: 271 ITVQDLLQLQVGDVVPLSRRVTQDLDLYVSDQLKFKAQAGVLGRYLAVQVTSLVEGGDRA 330
Query: 311 L 311
+
Sbjct: 331 V 331
>gi|51894145|ref|YP_076836.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
gi|51857834|dbj|BAD41992.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
Length = 308
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 6/278 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + + + + L + V I+ S FS + L
Sbjct: 34 KDLIRTLVLVHENLARLLQSYLSAGLRTWVQITVRSTNQYTFSEFTQLLPNPTIALSFRL 93
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + S+N+ ++E + G R L+ +E + +R + + +
Sbjct: 94 NPLPGMCLLEISHNIAFAIVERVFGGPGS--DLQPQRELTEIELGIIQRVVRDTFGPMKE 151
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
E P +E E V I + + I P T+
Sbjct: 152 AWRNVAEIDPAIEAVET--NPVFIQIENPTEVVAAITLAVEIGEHLGHMTFAFPYSTVEP 209
Query: 209 T--TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
L S +++++S + R + + + + + L + + L++G VI
Sbjct: 210 VLSRLSPQSWLAETKHKSPSDEESLRRAVQEAPLPVKALLGKTRMRLGEFLALQVGDVIR 269
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
R + K + + G VG+ ++IT R+
Sbjct: 270 LDARVGGELPVFVGNKLAFQAKPGVVGERMAVQITRRV 307
>gi|153951200|ref|YP_001397325.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
doylei 269.97]
gi|152938646|gb|ABS43387.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
doylei 269.97]
Length = 359
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+ S + + S F+ S
Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG ++ +R L+ +E L + I L
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ +T E P++E + NE V + M + I N + + P L
Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
AI+S + K+++ ++G +I+I + I D+ +K L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337
>gi|260772330|ref|ZP_05881246.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
69.14]
gi|260611469|gb|EEX36672.1| flagellar motor switch protein FliM [Vibrio metschnikovii CIP
69.14]
Length = 281
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 84/257 (32%), Gaps = 5/257 (1%)
Query: 53 KMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
+ ++S Q KF ++ + + LV L+EN
Sbjct: 1 MLRKTAEVSINGVQMMKFGEYQNTLYVPTSLNMVRFRPLKGTALVTMEARLVFILVENFF 60
Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
G ++ R + E+++ + + + A + S E
Sbjct: 61 GGDGRYHARIEGREFTPTERRVIQLLLKIVFADYKEAWSPVMGVE--FEYLDSEVNPSMA 118
Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPF 231
E + + ++ ++ F +++P + + + Q+
Sbjct: 119 NIVSPTEVIVVCSFHIEVDGGGGDFHMVMPYSMVEPIRELLDAGVQSDKMETDVRWSSAL 178
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + +N + + L+D++ L++G +IP AI+ Y ++GR
Sbjct: 179 RDEIMDVPINFRVNLLEQDIALRDLMDLQVGDIIPIKMP--EHAIMFVEELPTYRVKMGR 236
Query: 292 VGKNYTIRITDRINFDQ 308
G ++I+ +I +
Sbjct: 237 SGDKLAVQISQKIKRPE 253
>gi|57237070|ref|YP_178082.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
gi|86149575|ref|ZP_01067805.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86151492|ref|ZP_01069707.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86154028|ref|ZP_01072229.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88597737|ref|ZP_01100970.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121613064|ref|YP_999786.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|148926866|ref|ZP_01810544.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157414374|ref|YP_001481630.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 81116]
gi|167004761|ref|ZP_02270519.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|205356443|ref|ZP_03223207.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561745|ref|YP_002343524.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|283955504|ref|ZP_06372999.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 1336]
gi|315123665|ref|YP_004065669.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|57165874|gb|AAW34653.1| flagellar motor switch protein FliM [Campylobacter jejuni RM1221]
gi|85839843|gb|EAQ57102.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85841839|gb|EAQ59086.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85842442|gb|EAQ59656.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87248986|gb|EAQ71948.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88190041|gb|EAQ94017.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359451|emb|CAL34234.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|145844443|gb|EDK21551.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157385338|gb|ABV51653.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|205345630|gb|EDZ32269.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|283792965|gb|EFC31739.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 1336]
gi|284925356|gb|ADC27708.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307747020|gb|ADN90290.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni M1]
gi|315017387|gb|ADT65480.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315057501|gb|ADT71830.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni S3]
gi|315927743|gb|EFV07070.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929164|gb|EFV08389.1| flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 305]
gi|315931622|gb|EFV10587.1| Flagellar motor switch protein FliM [Campylobacter jejuni subsp.
jejuni 327]
Length = 359
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+ S + + S F+ S
Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG ++ +R L+ +E L + I L
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ +T E P++E + NE V + M + I N + + P L
Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
AI+S + K+++ ++G +I+I + I D+ +K L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337
>gi|302383953|ref|YP_003819776.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides
ATCC 15264]
gi|302194581|gb|ADL02153.1| flagellar motor switch protein FliM [Brevundimonas subvibrioides
ATCC 15264]
Length = 356
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 98/282 (34%), Gaps = 4/282 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + + + +V++S + S +F ++S + +
Sbjct: 67 SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFR 126
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + +NL+ ++++ LLG ++ R +T+E+ L +R + I A
Sbjct: 127 AEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVILADA 186
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
NL+ + + + + +E+ L++P TL
Sbjct: 187 QAAFEPLTPVHFNLDRLET--NPRFAAIARPANAAILVKLRIDMEDRGGRVELLLPYATL 244
Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
++ + + A + + + + ++ + L V+ LK+G +
Sbjct: 245 EPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTDTEVRAVLDEQSCPLSTVLNLKVGDTL 304
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ + + + +GR G++ IR+ I+ +
Sbjct: 305 MLNATPDSDISIRCGSIPVTTGRMGRKGQHIAIRVEGPISVE 346
>gi|154253006|ref|YP_001413830.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
DS-1]
gi|154156956|gb|ABS64173.1| flagellar motor switch protein FliM [Parvibaculum lavamentivorans
DS-1]
Length = 374
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 101/280 (36%), Gaps = 4/280 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + + + +V++S + S +F ++S + +
Sbjct: 63 SYERLPMLEIVFDRLVRLMTVSLRNFTSDNVEVSLDNVSSIRFGDYLNSIPLPAILAVFR 122
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
W + +NL+ ++++ LLG ++ R +T+E L +R I + +
Sbjct: 123 AKQWDNYGMFTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIELNLVQRMIEVVLQDV 182
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ L+ + + + + +E+ L++P TL
Sbjct: 183 QSAFEPLSPVTLELDRMET--NPRFAAIARPANAAILVKLRVDMEDRGGRIELLLPYATL 240
Query: 207 LKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ L + + A + + V ++ ++ ++ +L++V+ ++GQ +
Sbjct: 241 EPIRELLLQMFMGEKFGRDTIWESHLATELWATKVPLEAVLDEQQLSLREVMDFRVGQTL 300
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ L G + ++GRVG + +R+ I
Sbjct: 301 MLNSGPEGAIDLRCGGVRLGKGKMGRVGNHVAVRVEQAIK 340
>gi|301165893|emb|CBW25466.1| flagellar motor switch protein FliM [Bacteriovorax marinus SJ]
Length = 343
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 34/296 (11%), Positives = 89/296 (30%), Gaps = 9/296 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
N R+ I + + + + IS S
Sbjct: 43 NIQAYDLTNQDRVIRG------RMPILEIISERFIRSFRVSLSNSLRKISTISMISTDLL 96
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
KF +++ + + + L ++++ G + ++ + +
Sbjct: 97 KFGEFVNTLPIPSCMCIMRFNELRGPALLVFESKLAYAIIDSYFGGTDRPFTKIEGKEFT 156
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+E K+ + L + + + ++ + + +
Sbjct: 157 MIELSFMKKVMDMAINDLEEAWAPVHRIDAQ--YLRTEINPQFVGVVPPSDVIIATTLEV 214
Query: 189 TIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
E+ + + ++++P T+ S Q ++ Q + + ++
Sbjct: 215 EFESASGTIMIVVPYSTIEPIKQKLSSSFQTDNDMADSIWTQAMNEHIKQAHATMVVKLG 274
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
T+ D+VTL+ G +IP ++ G E C +G N ++IT+
Sbjct: 275 ETNITVGDLVTLEKGDIIPLNQEASGEVVVEVEGVEKMKCLIGTHKGNRAVQITNV 330
>gi|283955445|ref|ZP_06372943.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
414]
gi|283793072|gb|EFC31843.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
414]
Length = 359
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+ S + + S F+ S
Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG ++ +R L+ +E L + I L
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ +T E P++E + NE V + M + I N + + P L
Sbjct: 168 ESWATVTEIYPSIEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFLELKQGDIL 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
AI+S + K+++ ++G +I+I + I D+ +K L K
Sbjct: 286 RLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEILEK 337
>gi|317133477|ref|YP_004092791.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
YUAN-3]
gi|315471456|gb|ADU28060.1| flagellar motor switch protein FliM [Ethanoligenens harbinense
YUAN-3]
Length = 335
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 42/305 (13%), Positives = 104/305 (34%), Gaps = 15/305 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S K P + + K K S + Y + L + + +
Sbjct: 31 STEKKVRPYDFKIPKKF------NKEQMKTLSIIYENYGRLLSSYLSGTLRSYCKVEVLT 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ +F ++ + N + + + + S ++ +++ LLG E +
Sbjct: 85 IEEQRFFEYSNALESNVLMGVLDMKPLEGSSMVTLSQSVAFGIIDRLLGGPGEIYE--AD 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + +E +L ++ + + ++ P+ + +++ NE V +
Sbjct: 143 RDYTDIEMQLLRQVVQTVCRLVGDAWENVYALQPDFVRLE--NNSRQSQLVSPNETVVIV 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS-----QNKSENQSEDLIDPFARKTYQLN 239
+++ I +V + IP L + + + RK Q+
Sbjct: 201 MLDVEIRDVVGNISFCIPYVILEPVLEHLNTRYWFTESRSKTGDEQASRENLLRKVRQIP 260
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + + TL + + L++G V+P A + + ++ + LG N IR
Sbjct: 261 IELRAVLGTARITLHEALQLQVGDVVPLDQHLDEKAAVYSGKEKWFEGTLGTWHNNRAIR 320
Query: 300 ITDRI 304
+ +
Sbjct: 321 VDRIM 325
>gi|220924581|ref|YP_002499883.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS
2060]
gi|219949188|gb|ACL59580.1| flagellar motor switch protein FliM [Methylobacterium nodulans ORS
2060]
Length = 403
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 37/281 (13%), Positives = 98/281 (34%), Gaps = 4/281 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + L + +V+++ + S +F +++ +
Sbjct: 107 SYERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPMPTLLGVFK 166
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
W ++ + ++L L+ LLG T +L R +++E L +R + I L
Sbjct: 167 ADLWENSGLLTVDSSLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDL 226
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
++ + T I++ + +E ++ P T+
Sbjct: 227 EASFQPLSPVRFQIDRIE--SNPRFATITRPANAAILIDLKLDMEGRGGLLQILFPYATI 284
Query: 207 LKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ L S + + A + +Q ++ ++ ++ L+ V++L++G I
Sbjct: 285 EPIRDLLLQSFMGEKLGRDHVWEGHLATEIWQADLAVEAVLHEMTLPLRRVLSLEVGDTI 344
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
F + L + +GR+ + +++T +
Sbjct: 345 MFDAKPTDLITLRCGDWALTQGRIGRLDDSIAVQVTRPLRR 385
>gi|223041119|ref|ZP_03611374.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
gi|222877613|gb|EEF12739.1| flagellar motor switch protein FliM [Campylobacter rectus RM3267]
Length = 367
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 6/304 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+++ K + + + L M V+I S + +
Sbjct: 37 VIIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLM 96
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ S+ N + + ++ +++ LLG + E +R L+ +E L
Sbjct: 97 SLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGEGFE--ASRELTDIEVNLL 154
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ + L + S + PN+E + NE V + M + + N +
Sbjct: 155 DAILRMMMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSG 212
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ P L + + + + V + + ++
Sbjct: 213 MINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSVVSV 272
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ + LK G ++ AI++ + KE++ E+G +IRI + I D+ +KN
Sbjct: 273 NEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKN 332
Query: 314 FLHK 317
L +
Sbjct: 333 ILEQ 336
>gi|325288785|ref|YP_004264966.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
DSM 8271]
gi|324964186|gb|ADY54965.1| flagellar motor switch protein FliM [Syntrophobotulus glycolicus
DSM 8271]
Length = 332
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 45/313 (14%), Positives = 111/313 (35%), Gaps = 10/313 (3%)
Query: 1 MRGQSIHKNT---SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
+ S+ + S H + L K ++ + + L M
Sbjct: 17 LSDGSVDEEAIALSNSHKVRLYDFKRPNKFSKGQLNSLRNIHENFCRNLVTYLAGAMHTV 76
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
++ S + + S + S+ N I S L +++ LLG +
Sbjct: 77 IEAKVLSTEQVTYDEYTRSLPYPSILGIYSMDPLEGNALIELSPGLGFHMVDRLLGGYGK 136
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
+ NR L+ +E+++ + + ++ +V+ + S +P D ++
Sbjct: 137 --DAMKNRDLTEIERRIVQGMLRKMISVIGEAWSEIYTITPQYVDMET--NVQFIQIVAP 192
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARK 234
NE V + M + IE+ + +P + + + + Q+ + RK
Sbjct: 193 NEMVVVVTMEVKIEDSIGMINICLPYIVMKPILDKLNNILLFSSAGKAQNPEDQRTIRRK 252
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++ V + + + T+++++ L+ G VIP + + + ++ G
Sbjct: 253 IERVRVPLKVFLGQTQITVRELLGLEKGDVIPLQQHIQEPLDIYVGKFKKFAGIPGLHSN 312
Query: 295 NYTIRITDRINFD 307
++I+ +N +
Sbjct: 313 RLAVQISGVLNEE 325
>gi|170288054|ref|YP_001738292.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
gi|170175557|gb|ACB08609.1| flagellar motor switch protein FliM [Thermotoga sp. RQ2]
Length = 328
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 15/295 (5%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
P ++ K + + + + L ++ VD+ S
Sbjct: 36 VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
+ I S + + + +L T+L+ ++G NR +
Sbjct: 89 YEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPPTE 145
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E + ++ + + +L Q S Q P++E+ + NE V + +++
Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203
Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
S + P L + + E+ ++ + + ++ V + I
Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVI 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ LK+++ L++G VI K + G+ + G Y +++T
Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGTFKGKYAVKVT 318
>gi|170742328|ref|YP_001770983.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
gi|168196602|gb|ACA18549.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
Length = 403
Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 4/281 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + L + +V+++ + S +F +++ +
Sbjct: 107 SYERLPMLEIIFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFK 166
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
W ++ + +NL L+ LLG T +L R +++E L +R + I L
Sbjct: 167 ADLWENSGLVTVDSNLAYATLDLLLGGKRGTTTIRLDGRPFTSIEMSLVRRMLEIILGDL 226
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
++ + T I++ + +E ++ P T+
Sbjct: 227 EASFQPLSPVRFQIDRLE--SNPRFATITRPANAAILIDLKLDMEGRGGLLQILFPYATI 284
Query: 207 LKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ L S + + A + +Q V ++ ++ LK V+ L++G I
Sbjct: 285 EPIRDLLLQSFMGEKLGRDHVWEGHLATEIWQAEVEVEAVLHQMTLPLKRVLALEVGDTI 344
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
F + L + +GR+ + +++T +
Sbjct: 345 LFDAKPTDLITLRCGDWALSQGRIGRLEDSIAVQVTRPLRR 385
>gi|329888223|ref|ZP_08266821.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC
11568]
gi|328846779|gb|EGF96341.1| flagellar motor switch protein FliM [Brevundimonas diminuta ATCC
11568]
Length = 352
Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 37/296 (12%), Positives = 102/296 (34%), Gaps = 4/296 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 49 ERSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDTISSIRFGDY 108
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 109 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 168
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + I Q NL+ + + + + +E+
Sbjct: 169 VLVQRMVEVILNDARQAFEPLTPVHFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 226
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + ++ ++
Sbjct: 227 RGGRVELLLPYSTLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTETEVRCVLDEQQM 286
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
L V+ LK+G + ++ + A + + +GR G++ +R+ I+ D
Sbjct: 287 PLSKVLDLKVGDTLMLNVTPESEVSVRAGSIPLTTGRMGRKGQHIAVRVEGPISTD 342
>gi|118589946|ref|ZP_01547350.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
gi|118437443|gb|EAV44080.1| flagellar motor switch protein FliM [Stappia aggregata IAM 12614]
Length = 319
Score = 219 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 45/303 (14%), Positives = 116/303 (38%), Gaps = 4/303 (1%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
+ RL G + + + + ++K IS + ++ + ++
Sbjct: 19 IADRLLDAAGISVDRLPMLPVVFDRMARLMADAMRQKSPSPSYISVSYVENNRIGDVLDE 78
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
F+ N + + W + +G + + TL++ L GA P R S +E ++A+
Sbjct: 79 FESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDDERPFSNIETRIAR 138
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ L + + E++ +E + N +
Sbjct: 139 TMFEVAAKALAESFAPIAETTLKIERIE--SRMDFAVVGRRNNPAVVARLLQQAIGRGGE 196
Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
+++P TL + ++ + F + + V ++ + ++ +L D
Sbjct: 197 VFIVMPHSTLNPLRQRLSQVLSGEMSSRDKQWTQHFHNEIQRTEVKLEAILEEREMSLGD 256
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI-NFDQKSLKNF 314
+ L++GQVI ++ L+ N + +++C+LG++ +YT++I + I ++ +
Sbjct: 257 LANLRVGQVIELQATARSPVTLACNDQPVFTCQLGQLNGSYTLQIDELIHEEEKDLFDDL 316
Query: 315 LHK 317
++
Sbjct: 317 RNR 319
>gi|227820849|ref|YP_002824819.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
gi|227339848|gb|ACP24066.1| Flagellar motor switch protein FliM [Sinorhizobium fredii NGR234]
Length = 315
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 91/312 (29%), Positives = 157/312 (50%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S N LLAR+TG LGD KTI + + LG+++ + LP++ K++ D+ I Y
Sbjct: 4 STDSNVYAFDKKLLARMTGALGDDKTIGRTALELGHVFSERLPEMLKQETGRDIAIGYAG 63
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ G + +I E + S SL +W + F IGC + ++I L+E LLGA I +
Sbjct: 64 VKMGFRNELIADLGEAVLLSDVSLRNWCAEFQIGCDSPVLIALVEALLGAEPIDIEEPLP 123
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R+LS +E +A +I+ + + P + ++ L + + +I
Sbjct: 124 RALSKIEIDVAVPVFERIAEAVRMAVDAPGGFEPVVGRPHNGAERLPPDPALEDVYAASI 183
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+M + V S+F +IIPQ LLKT ++ + ++E+ D + + + V ++
Sbjct: 184 DMTFGLGPVLSTFSVIIPQNVLLKTQIVPPGNAGRNESMKTDWSEQLEEQIRRSAVTLEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
RI L+ TL + L+ G VIPF + ++ANG+++Y CE GR G YT+R+ D
Sbjct: 244 RIQLESLTLDTISRLQPGDVIPFHDGQDVRVEVNANGRDLYVCEFGRSGSRYTVRVKDTH 303
Query: 305 NFDQKSLKNFLH 316
+Q L++ +
Sbjct: 304 GSEQDILRHIMS 315
>gi|15643443|ref|NP_228487.1| flagellar motor switch protein FliM [Thermotoga maritima MSB8]
gi|4981202|gb|AAD35762.1|AE001740_8 flagellar motor switch protein FliM [Thermotoga maritima MSB8]
Length = 328
Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 100/295 (33%), Gaps = 15/295 (5%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
P ++ K + + + + L ++ VD+ S
Sbjct: 36 VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
+ I S + + + +L T+L+ ++G E P NR +
Sbjct: 89 YEEFIRSVMIPSFIVIFTGDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTE 145
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E + ++ + + +L Q S Q P++E+ + NE V + +++
Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203
Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
S + P L + + E+ ++ + + ++ V + I
Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPEKVEERMEELRKASQKIPVTVQAVI 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ LK+++ L++G VI K + G+ + G Y +++T
Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318
>gi|23009967|ref|ZP_00050822.1| COG1868: Flagellar motor switch protein [Magnetospirillum
magnetotacticum MS-1]
Length = 316
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 98/285 (34%), Gaps = 4/285 (1%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
+ + + L + +V+++ + S +F +++ +
Sbjct: 22 ERLPMLEIVFDRMIRLLSTSLRNFFQDNVEVTLDNITSVRFGDYLNAIPLPTLLGVFKAD 81
Query: 90 SWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
W + + L + ++ LLG + +L R +T+E L +R I I + L
Sbjct: 82 PWEGSGIVTVEQTLAYSTMDLLLGGKRGGSSSRLDGRPFTTIEMNLVRRLIDIILSDLEL 141
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
++ + T I++ + ++ ++ P T+
Sbjct: 142 SFQPLSPVRFGIDRLET--NPRFATITRPGNAAILISLKLDMDGRGGGMQILFPYATVES 199
Query: 209 TTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ S + + + A + +Q ++ ++ ++ LK V+ LK+G + F
Sbjct: 200 IRDLLMQSFMGERLGRDQVWESHLATEIWQADLEMEAVLHEVTLPLKRVLGLKVGDTLMF 259
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ + + +GR+ ++I + + +L+
Sbjct: 260 DRKPTDLITVRCGDWALTQGRIGRIDDAIAVQIARPLRQSRTTLQ 304
>gi|78044874|ref|YP_359866.1| flagellar motor switch protein FliM [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996989|gb|ABB15888.1| flagellar motor switch protein FliM [Carboxydothermus
hydrogenoformans Z-2901]
Length = 335
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 37/284 (13%), Positives = 96/284 (33%), Gaps = 7/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + Y + + + ++ + S + + S + +
Sbjct: 53 SKENLRTLHLIHDNYARLISNFLTGYLRTNISVKVASVDQATYEDFLVSVPTPTLITTFK 112
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L + + + + ++ L G S + P++ R L+ +E + K+ ++ L
Sbjct: 113 LHPLKGSMVMETNLQFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLA 170
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
Q + + P +E + + + NE V I I L +P E L
Sbjct: 171 QAWAEIIKVEPEIEALE--NNPRLHQVLSPNEIVAIITFTTEILGNNGLINLCLPFEVLD 228
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + E + + + + + +++ + +++G +
Sbjct: 229 PLLAKLSASYWFSHATAADREAFARHMEGFLAESELEVSAILGGTELRVREFLKIEVGDI 288
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + L ++++ + GRVG+ +IT I D+
Sbjct: 289 VVLNRKVDEELELFVEDQKLFKVQPGRVGEKLCCQITGMIERDE 332
>gi|291277482|ref|YP_003517254.1| flagellar motor switch protein [Helicobacter mustelae 12198]
gi|290964676|emb|CBG40531.1| flagellar motor switch protein [Helicobacter mustelae 12198]
Length = 357
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 6/319 (1%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + + SP I L K + + + L M V+I
Sbjct: 22 VDSSANEQGISPKRQITLYDFKRPNRVSKEQLRAFKGIHDKMARNLSSQISAIMRSIVEI 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + S F+ S+ + + ++V ++++ LLG ET
Sbjct: 82 QLHSVDQMTYGEFLMSLPSPTSFNVFSMKPMDGTGVLEINPSIVFSMIDRLLGGKGETYD 141
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
R S +E L + QI L E P+++ + NE
Sbjct: 142 H--QREFSDIELNLLDTILRQIMQTLKDAWGPVAEIFPSVDAKESSPNV--VQIVAQNEV 197
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQL 238
V + M M I + + L P +L S + +
Sbjct: 198 VIMVVMEMIIGHSSGMLSLCYPVISLEAVLSRLGSRDLVLSETSSKKSRNKELQALIGGA 257
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+++ + +L++++ L+ G +I ++ +GK+ + ++G TI
Sbjct: 258 GISLSAFLGGANLSLREILELQRGDIIRLDRVADDTVFVAIDGKDKFLADIGLQRYRKTI 317
Query: 299 RITDRINFDQKSLKNFLHK 317
RI + I ++ +K L
Sbjct: 318 RIKEAIRTEKDQVKEILEM 336
>gi|225181581|ref|ZP_03735022.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
1]
gi|225167689|gb|EEG76499.1| flagellar motor switch protein FliM [Dethiobacter alkaliphilus AHT
1]
Length = 325
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 97/307 (31%), Gaps = 6/307 (1%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ + + P+ + K + + + + L + V ++ S
Sbjct: 23 AEEEPQTSDTPVQVYDFRRPNKFSKDQMRTLQIVHENFARILSNFLTAYLRTPVQVTLAS 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
F I S + S S + + + V +++ L G +T Q+
Sbjct: 83 VSQVTFEEFIFSLPTPTLMSIFKASDNMGSAMLETNPQFVFPIIDLLFGGEGKTPKQI-- 140
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R L+ +E + +R + +I L E SP +E+ + N SNE V +
Sbjct: 141 RELTEIELTVMRRIVNKILENLRYAWEDINELSPQIENMDT--NPQFNQMIASNETVALL 198
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVNI 242
++ I + + P TL + + S+ ++V +
Sbjct: 199 TLSTKIRDSEGLINVCFPFITLEPVIANLTAQHWFSNSQISGGVHSRMLETGLEDVDVEL 258
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ++D + + G VI R L K ++ + G ++
Sbjct: 259 TAVLGSSTVQMEDFLQFEEGDVILLDQRVDCPMTLLVEEKPMFKIQAGVSKGRRAVQFLH 318
Query: 303 RINFDQK 309
+ +
Sbjct: 319 AEGGEAE 325
>gi|221235077|ref|YP_002517513.1| flagellar motor switch protein FliM [Caulobacter crescentus NA1000]
gi|300680949|sp|B8GXB5|FLIM_CAUCN RecName: Full=Flagellar motor switch protein FliM
gi|220964249|gb|ACL95605.1| flagellar motor switch protein fliM [Caulobacter crescentus NA1000]
Length = 374
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 33/288 (11%), Positives = 96/288 (33%), Gaps = 4/288 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 72 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 131
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 132 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 191
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R I + L S +L+ + + + + +E+
Sbjct: 192 VLVQRMIEVVLHDLKSAFEPLHPVSFSLDRLET--NPRFAAIARPANAAILVKLRIDMED 249
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ ++
Sbjct: 250 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQV 309
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
L V+ +++G + + L A + +GR + +R
Sbjct: 310 PLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGRRNHSIAVR 357
>gi|254418956|ref|ZP_05032680.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3]
gi|196185133|gb|EDX80109.1| flagellar motor switch protein FliM [Brevundimonas sp. BAL3]
Length = 346
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 98/282 (34%), Gaps = 4/282 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + + + +V++S + S +F ++S + +
Sbjct: 58 SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILAVFR 117
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + +NL+ ++++ LLG ++ R +T+E+ L +R + +
Sbjct: 118 AEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIERVLVQRMVEVVLNDA 177
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ NL+ + I + + +E+ L++P TL
Sbjct: 178 RLAFEPLTPVTFNLDRLET--NPRFAAIARPANAAILIKLRIDMEDRGGRIELLLPYATL 235
Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
++ + + A + + + ++ + L V+ LK+G +
Sbjct: 236 EPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTETEVRAVLDEQMMPLSTVLNLKVGDTM 295
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ + A + + +GR G++ +RI +N +
Sbjct: 296 MLNATPDSEVSIRAGAIPLTTGRMGRKGQHIAVRIEGPVNPE 337
>gi|154175307|ref|YP_001408769.1| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
gi|153793210|gb|EAT99984.2| flagellar motor switch protein FliM [Campylobacter curvus 525.92]
Length = 366
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 50/303 (16%), Positives = 101/303 (33%), Gaps = 6/303 (1%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
++ K + + + L M V+I S + + S
Sbjct: 40 IIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLMS 99
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
F+ S+ N + + ++ +++ LLG + E NR L+ +E L
Sbjct: 100 LPSPTSFNVFSIKPLDGNCILEINPSIAFPMIDRLLGGTGENFET--NRELTDIEVNLLD 157
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ I L + + + PN+E + NE V + M + + N +
Sbjct: 158 AVLRMIMQRLKESWAMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSGM 215
Query: 197 FVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
L P L + + + + V + + ++
Sbjct: 216 INLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKAIVSVS 275
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ + LK G ++ AI+ + KE++ E+G +I+I I D+ +KN
Sbjct: 276 EFLDLKEGDIVRLDRSADDKAIVCIDKKEVFLAEVGLHRFRKSIKIEQLIRSDKDEIKNI 335
Query: 315 LHK 317
L K
Sbjct: 336 LEK 338
>gi|330961230|gb|EGH61490.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 252
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 89/254 (35%), Gaps = 6/254 (2%)
Query: 52 EKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL 111
+ D++ Q KF +HS + A + LV L++N
Sbjct: 1 NLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNF 60
Query: 112 LGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK 171
G ++ R + E ++ + + Q L + E + E
Sbjct: 61 FGGDGR-HAKIEGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAM 117
Query: 172 NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDP 230
+E V ++ ++ + +P + + + Q+ ++Q E ++
Sbjct: 118 ANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWVNA 177
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+NV + T I ++ L+D++ ++ G VIP ++ ANG + +LG
Sbjct: 178 LKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVEL--SDSLVMRANGVPSFKVKLG 235
Query: 291 RVGKNYTIRITDRI 304
+++ + I
Sbjct: 236 SHKGKMALQVIEPI 249
>gi|148269397|ref|YP_001243857.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
gi|147734941|gb|ABQ46281.1| flagellar motor switch protein FliM [Thermotoga petrophila RKU-1]
Length = 328
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 98/295 (33%), Gaps = 15/295 (5%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
P ++ K + + + + L ++ VD+ S
Sbjct: 36 VKPYDFKRPSKF------SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLT 88
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
+ I S + + + +L T+L+ ++G NR +
Sbjct: 89 YEEFIRSVMIPSFIVIFTGDIFEGSAIFEMRLDLFYTMLDIIMGGPG---DNPPNRPPTE 145
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E + ++ + + +L Q S Q P++E+ + NE V + +++
Sbjct: 146 IETSIMRKEVTNMLTLLAQAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVS 203
Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
S + P L + + E+ ++ + + ++ V + I
Sbjct: 204 WGEFTSFINVCWPFSLLEPLLEKLSDRFWMMGRKPERVEERMEELKKVSQKVPVTVQAVI 263
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ LK+++ L++G VI K + G+ + G Y +++T
Sbjct: 264 GETELRLKEILDLEVGDVIRLGTHYKDEIRIDVEGRPKFRGIPGVFKGKYAVKVT 318
>gi|150395476|ref|YP_001325943.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
medicae WSM419]
gi|150026991|gb|ABR59108.1| surface presentation of antigens (SPOA) protein [Sinorhizobium
medicae WSM419]
Length = 315
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 91/311 (29%), Positives = 156/311 (50%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
N LLAR+ G LGD K I++++ L ++ + LP + + + DV I+Y
Sbjct: 5 TASNIHAFDKRLLARMIGALGDDKVIDRLALELAQIFDELLPGVLRSETGCDVTIAYAGF 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
++G + ++ + + SL +W ++F IGC + ++I L+E LLGA I + R
Sbjct: 65 RAGLRNELVAGLGDGVLIGDLSLRNWCTDFQIGCDSPVLIALVEALLGAEPAGIEEPAPR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
SLS +E +A I+ VL ++ P + Y+ K L + + +I+
Sbjct: 125 SLSKIEIDVALPVFHGIAEVLRIAVNAPGGFEPVVGRPYNSAERAKPDPALEDVYAASID 184
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
M + + V S+F +I+PQ TLLKT +S K +N + + + + V ++ R
Sbjct: 185 MTIGLGPVLSTFSVIVPQSTLLKTRFVSPKGAGKDQNAKTEWTEQLEEQVRRSAVALEAR 244
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
I L+ TL + L+ G VIPF + +SANG+++Y CE GR G YT+R+ D
Sbjct: 245 IRLESLTLDTIARLQAGDVIPFHDGQDVRVEVSANGRDLYVCEFGRSGSKYTVRVKDTHG 304
Query: 306 FDQKSLKNFLH 316
+Q L++ +
Sbjct: 305 SEQDILRHIMS 315
>gi|224437150|ref|ZP_03658131.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
18818]
gi|313143613|ref|ZP_07805806.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
18818]
gi|313128644|gb|EFR46261.1| flagellar motor switch protein FliM [Helicobacter cinaedi CCUG
18818]
Length = 353
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 50/318 (15%), Positives = 106/318 (33%), Gaps = 11/318 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ H+ + L K + S+ + L M V+I
Sbjct: 28 KQGITHQKQ-----VTLYDFKRPNRVSKEQLRAFKSIHDKMARSLSSQVSAVMRSIVEIQ 82
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S + + S F+ S+ + + ++ +++ LLG +
Sbjct: 83 LHSVDQMTYGEFLMSLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGDPYEN 142
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+R S +E L + QI L + S+ E P+++ + NE V
Sbjct: 143 --SREFSDIELNLLDTLLRQIMQNLKEAWSSITEIFPSVDAKESSPNV--VQIVAQNEIV 198
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLN 239
+ M + I + + + P +L S + + N
Sbjct: 199 IMVVMEIIIGHSSGMMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKELQALIAGAN 258
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + +LK+V+ L++G ++ ++S +G+E Y +G T++
Sbjct: 259 VVVSGYLGNATLSLKEVLDLQVGDIVRLDRAADDTILVSVDGREKYIASIGLQRYRKTLQ 318
Query: 300 ITDRINFDQKSLKNFLHK 317
I + I ++ +K L
Sbjct: 319 IKEVIKTEKDQVKEVLEM 336
>gi|255322027|ref|ZP_05363177.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
gi|255301131|gb|EET80398.1| flagellar motor switch protein FliM [Campylobacter showae RM3277]
Length = 368
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 6/304 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+++ K + + + L M V+I S + +
Sbjct: 38 VIIYDFKRPNRVSKEQLRAIKGIHDKLARNLASQISSVMRSIVEIRLHSVDQMTYGEFLM 97
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ S+ N + + ++ +++ LLG + E +R L+ +E L
Sbjct: 98 SLPSPTSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGNGEGFET--SRELTDIEVNLL 155
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ + L + S + PN+E + NE V + M + + N +
Sbjct: 156 DAILRMMMQRLKESWSMITDMYPNVEAKESSPNV--VQIVSQNEIVIMVVMEIIVGNSSG 213
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ P L + + + + V + + ++
Sbjct: 214 MINICYPVIYLEPILSRLANRDIMLGETSAKKSRNKELKTLIGRAEVLYEAILGKSIVSV 273
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ + LK G ++ AI++ + KE++ E+G +IRI + I D+ +KN
Sbjct: 274 NEFLNLKEGDILRLDRSANDKAIVTIDKKEVFLAEVGLHRFRKSIRIEELIRSDKDEIKN 333
Query: 314 FLHK 317
L +
Sbjct: 334 ILEQ 337
>gi|257866408|ref|ZP_05646061.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC30]
gi|257873076|ref|ZP_05652729.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC10]
gi|257876021|ref|ZP_05655674.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC20]
gi|257800366|gb|EEV29394.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC30]
gi|257807240|gb|EEV36062.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC10]
gi|257810187|gb|EEV39007.1| flagellar motor switch protein fliM [Enterococcus casseliflavus
EC20]
Length = 332
Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 10/299 (3%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + K + ++ +V + + + + IHS +
Sbjct: 36 DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 95
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133
+ S I + L + L+E L G + +S + +E
Sbjct: 96 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 155
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
+ + +AQ V L+ + N NE V + + I V
Sbjct: 156 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 213
Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L IP + + ++ ++D + + +N++ + +
Sbjct: 214 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 273
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+L + + L+ G VI + +GK + + G+ I + D++ +Q+
Sbjct: 274 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 332
>gi|295688787|ref|YP_003592480.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756]
gi|295430690|gb|ADG09862.1| flagellar motor switch protein FliM [Caulobacter segnis ATCC 21756]
Length = 369
Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 96/288 (33%), Gaps = 4/288 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 67 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 126
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 127 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 186
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R I + L + +L+ + + + + +E+
Sbjct: 187 VLVQRMIEVVLHDLKSAFEPLHPVAFSLDRLET--NPRFAAIARPANAAILVKLRIDMED 244
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ ++
Sbjct: 245 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQL 304
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
L V+ +++G + + L A + +GR + +R
Sbjct: 305 PLSRVLNMQVGDTLMLNATPDSLVELRAGAIPLTRGRMGRRNHSIAVR 352
>gi|312879599|ref|ZP_07739399.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
12260]
gi|310782890|gb|EFQ23288.1| flagellar motor switch protein FliM [Aminomonas paucivorans DSM
12260]
Length = 334
Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 43/307 (14%), Positives = 104/307 (33%), Gaps = 13/307 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ + + K + + + + L + V
Sbjct: 30 ETEERKVKIYDFRRPDKF------SKDQLRAIQMIHDSFARQLTTSLSTLVRSMVSAEVA 83
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + I S + V + S N + + +LV ++++ +LG E + +
Sbjct: 84 SVDQMAYDEFIRSLVQPTVIGVLEMYPLSGNAVLEMNPHLVFSIIDRMLGGKGEPLRKP- 142
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R L+ +E+ + +R + +I L + ST + E + V
Sbjct: 143 -RDLTDIERTVVERVMMKILEHLEESWSTVVDVRFRFE--SMESNPFFVQICPGTDMVLL 199
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL---IDPFARKTYQLNV 240
+ + + + L IP + S + ++L D +++ ++++V
Sbjct: 200 VTLKIQVGETEGIMNLCIPYFVMEPMIDKLSSQHWFASTGKKNLEGIRDMLSKRLHEVSV 259
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + TL DV+ L++ VI + L + + C+ G K+Y +
Sbjct: 260 PLALELGHCALTLGDVLQLQVNDVIRLDGKATDPLGLRVGNRVKFLCQAGLSEKHYAGSV 319
Query: 301 TDRINFD 307
+ + +
Sbjct: 320 LEVVQDE 326
>gi|328545470|ref|YP_004305579.1| flagellar motor switch protein FliM [polymorphum gilvum
SL003B-26A1]
gi|326415211|gb|ADZ72274.1| Flagellar motor switch protein FliM, putative [Polymorphum gilvum
SL003B-26A1]
Length = 314
Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 47/302 (15%), Positives = 115/302 (38%), Gaps = 3/302 (0%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
+ RL G + L + ++K IS + ++ + ++
Sbjct: 15 ITDRLLDAAGISVDRLPMLPVLFDRMARVFADAMRQKSTSPSYISVSCIENERIGDVLDE 74
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
++ N + + W + +G + + T+++ L GA P RS S +E ++A+
Sbjct: 75 YEANALVAVLYSPEWDTRMLVGFDRDFIFTMIDVLFGADGTEPPIDEERSFSNIETRIAR 134
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ L + S E++ +E + N + +
Sbjct: 135 SVFEVAAKALQESFSPIAETTLKIERVE--SRMDFAVVGRRNNPAVVARLLLQAIGRGGE 192
Query: 197 FVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
+++P TL + + + F + + V + + ++ TL +
Sbjct: 193 IFVVMPHSTLNPLRQRLSQVLSGEMSGRDKQWTQHFQTEIQRTEVRLQAVLEERELTLGE 252
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ L++GQ+I ++ L N + I++C LG++ +YT+++ D I+ ++ + + L
Sbjct: 253 IANLQVGQIIELQATPRSPVKLECNQQPIFNCLLGQLDGSYTLQVEDLIHLEKDIVDDLL 312
Query: 316 HK 317
+
Sbjct: 313 SR 314
>gi|87119476|ref|ZP_01075373.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
gi|86164952|gb|EAQ66220.1| flagellar motor switch protein FliM [Marinomonas sp. MED121]
Length = 322
Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 88/273 (32%), Gaps = 6/273 (2%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + ++ + D+S Q KF +H+ +
Sbjct: 49 RMPTLEMINERFARYTRISLFNLLRRTADVSSGGLQIMKFGEYVHTLYVPTSLNLVKFRP 108
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S LV L++N G ++ R + E ++ + + Q+ L +
Sbjct: 109 LRSTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTEIRIVQLMLEQVFVDLTEAW 167
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ L+ +E V ++ ++ + +P +
Sbjct: 168 APVLSVE--LDYIGSEVNPAMANIVSPSEVVVVSTFHIELDGGGGELHITLPYSMIEPVR 225
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ + + + + +LNV + + L+DV+ K G +IP
Sbjct: 226 ELLDAGVQSDVDEKDDRWGKSLQQDVKELNVELSAAVAHVDVPLQDVLKFKAGDIIPVDI 285
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ANG +LG + Y++++ +
Sbjct: 286 P--EFITVRANGLPTIKGKLGVSNEKYSVQVVE 316
>gi|114570494|ref|YP_757174.1| flagellar motor switch protein FliM [Maricaulis maris MCS10]
gi|114340956|gb|ABI66236.1| flagellar motor switch protein FliM [Maricaulis maris MCS10]
Length = 376
Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 36/295 (12%), Positives = 103/295 (34%), Gaps = 4/295 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 74 DKSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 133
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG + ++ R +T+E+
Sbjct: 134 LNSIPLPAILAVFRAQQLDNYGLLTVDSNLIYSIVDVLLGGRRGTSAMRIEGRPYTTIER 193
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R I + Q + + +LE + + + + +E+
Sbjct: 194 MLVQRMIEVVLGDAKQAFAPLTDVEFDLERVET--NPRFAAIARPANAAILVKLRIDMED 251
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ ++
Sbjct: 252 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWSTKMEVQAVLDEQRV 311
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+L V LK+G + + L + +GR+G N +R++ ++
Sbjct: 312 SLGTVANLKVGDTLYLDASPSSDVELRCGQVPLTRGRMGRIGHNVALRLSGPLSP 366
>gi|32266646|ref|NP_860678.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
51449]
gi|32262697|gb|AAP77744.1| flagellar motor switch protein FliM [Helicobacter hepaticus ATCC
51449]
Length = 353
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 103/304 (33%), Gaps = 6/304 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ L K + S+ + L M V+I S + +
Sbjct: 37 VTLYDFKRPNRVSKEQLRAFKSIHDKMARSLSSQVSAVMRSIVEIQLHSVDQMTYGEFLM 96
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S F+ S+ + + ++ +++ LLG + +R S +E L
Sbjct: 97 SLPSPTSFNIFSMKPLEGAAILEINPSIAFPMIDRLLGGKGDPYE--SSREFSDIELNLL 154
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L + S+ E P+++ + NE V + M + I + +
Sbjct: 155 DTLLRQVMQNLKEAWSSITEIFPSVDAKESSPNV--VQIVAQNEIVIMVVMEIIIGHSSG 212
Query: 196 SFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ P +L S + + NV + + TL
Sbjct: 213 MMSICYPVISLETVLSRLASRDLMLSDTSSKKSRNKELQALIAGANVIVSGYLGDATLTL 272
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
K+++ L++G ++ I+S +G+E Y +G T++I + I ++ +K
Sbjct: 273 KEILDLQVGDIVRLDTIADDTIIVSVDGREKYIASIGLQRYRKTLQIKEVIKTEKDQVKE 332
Query: 314 FLHK 317
L
Sbjct: 333 VLEM 336
>gi|330721397|gb|EGG99462.1| Flagellar motor switch protein FliM [gamma proteobacterium
IMCC2047]
Length = 329
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 48/306 (15%), Positives = 99/306 (32%), Gaps = 12/306 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ + + + +F + + ++
Sbjct: 31 SQPPVDGGVKAYDLTSQDHIVRG------RLPTLEMINERFARFTEQSMFNLLRETPVVT 84
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
++ KFS S + +LV+ L++ G
Sbjct: 85 AAKIENIKFSEYTQMLGIPSSLSLVKIHPLRGTAMFVLDADLVVNLVDRFFGG-GVHDNA 143
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R + E+++ ++ ++Q+ + Q T + E + + +E V
Sbjct: 144 IGEREFTVTEQRIIQKVLSQVFVDMKQAWQTIMDID--FEYLSNEENPAMIKAISPSEVV 201
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
+ IE + IP L S Q +E + + R +V
Sbjct: 202 VLSTFEIKIEEKGGRIQVAIPYSMLEPVREALDSGVQVDNEYTDGNWAEALQRDLRYASV 261
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I R+ +K TL++++ K G VIP E + IL ANG IY +G ++ ++I
Sbjct: 262 PISCRVAERKITLREILNFKAGDVIPIDMPESS--ILMANGVPIYEAAVGASNEHLALKI 319
Query: 301 TDRINF 306
+I+
Sbjct: 320 KRQIDR 325
>gi|325567500|ref|ZP_08144167.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
ATCC 12755]
gi|325158933|gb|EGC71079.1| flagellar motor switch protein FliM [Enterococcus casseliflavus
ATCC 12755]
Length = 336
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 10/299 (3%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + K + ++ +V + + + + IHS +
Sbjct: 40 DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133
+ S I + L + L+E L G + +S + +E
Sbjct: 100 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 159
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
+ + +AQ V L+ + N NE V + + I V
Sbjct: 160 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 217
Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L IP + + ++ ++D + + +N++ + +
Sbjct: 218 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 277
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+L + + L+ G VI + +GK + + G+ I + D++ +Q+
Sbjct: 278 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQEL 336
>gi|329298601|ref|ZP_08255937.1| flagellar motor switch protein FliM [Plautia stali symbiont]
Length = 269
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 36/259 (13%), Positives = 82/259 (31%), Gaps = 4/259 (1%)
Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
+ DIS + + + + + L + S +LV +
Sbjct: 2 ALFNLLRRSPDISVGAIKIQPYHEFARNLPVPTNLNLIHLQPLRGTALVVFSPSLVFIAV 61
Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
+NL G ++ R + E+++ +R + + +
Sbjct: 62 DNLFGGDGRFPTKVEGREFTHTEQRVIRRMLKLALEGYSDAWKAIYPLEVEYVRSE-MQV 120
Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDL 227
N N+ V + I N+ F + IP + + ++ + S +
Sbjct: 121 KFINITTSPNDIVVNTPFQVEIGNLVGEFNICIPFSMIEPLRELLVNPPLENSRQEDNHW 180
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
D ++ + + L ++ LK+G V+P I +G + +
Sbjct: 181 RDNLVKQVQHSELELIAHFAETSLRLSRILQLKLGDVLPIEKP--DRIIAHVDGVPVLTS 238
Query: 288 ELGRVGKNYTIRITDRINF 306
+ G + Y +R+ +IN
Sbjct: 239 QYGTLNGQYALRVEHQINP 257
>gi|269792932|ref|YP_003317836.1| flagellar motor switch protein FliM [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100567|gb|ACZ19554.1| flagellar motor switch protein FliM [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 335
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 7/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + L + V S + I S + V
Sbjct: 48 SKDQLRAIQMIHDSFARQLTTSLSTLVRSMVSSEVVSVDQLAYDEFIRSLVQPTVIGVLE 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ S N + + +LV +++ +LG E I + R L+ +E+ + +R + +I L
Sbjct: 108 MYPLSGNAVLEMNPHLVFAIIDRMLGGKGEPIRKP--RDLTDIERTVVERVMLKILEHLE 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ ST + E + V + + + + L IP +
Sbjct: 166 ESWSTVVDIRFRFE--SMESNPFFVQICPGTDMVLLVTLKVQVGEAEGIMNLCIPYFVME 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ E + + ++ V + + +L DV+ L+ G V
Sbjct: 224 PMIDKLSSQHWFASTGRKNVEGAREIIEARLSKVAVPVALELGHTVLSLGDVLQLREGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
I + L + + CE G K+Y R+ + ++ ++
Sbjct: 284 IRLDAKTSDPLGLRVGNRVKFLCEAGSFNKHYAARVLEVLSSEE 327
>gi|255022053|ref|ZP_05294059.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
51756]
gi|254968539|gb|EET26095.1| Flagellar motor switch protein FliM [Acidithiobacillus caldus ATCC
51756]
Length = 366
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 12/309 (3%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
PL + R+ ++ L + + + ++ DI S Q K+
Sbjct: 62 PLDLLNQDRM------NRSRMPTMEVLNDRFARSFRGSLFNYLRVNADIISLSAQIQKYG 115
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
I F SL+ + L ++E G + P+L R S +E
Sbjct: 116 EYIGKIALPSYFVMVSLTPLRGSMLFIMDPYLCYAVIEAFFGGNGRLEPKLEGRDFSVIE 175
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
+++ + I + P + + + S E V + +E
Sbjct: 176 QRVFNKIIDHAVEDFTSAWEPIIKLRPKVLRSDVKS--QFVSIASSTEGVVGSVFEIEME 233
Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ IP T+ +S V++ + +
Sbjct: 234 RWSGKLYTCIPYNTVEPLREQLVSGVAADQSEMDPSWKQMLHMDIQNAMVDVSVILASQD 293
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR-ITDRINFDQK 309
L TL+ G V+ F + A + I G Y ++ ++ R ++
Sbjct: 294 IPLSRARTLQKGDVLSFDRVQD--ARVYVEDILIGEGRYGAFKNQYAVKLVSYRTPSEED 351
Query: 310 SLKNFLHKR 318
L++ K+
Sbjct: 352 VLQSIRLKK 360
>gi|224370777|ref|YP_002604941.1| FliM [Desulfobacterium autotrophicum HRM2]
gi|223693494|gb|ACN16777.1| FliM [Desulfobacterium autotrophicum HRM2]
Length = 326
Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 34/286 (11%), Positives = 88/286 (30%), Gaps = 3/286 (1%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
T + + + + + + +VD++ + KF+ + S
Sbjct: 40 DFTSQDKVVRARMPTFDVINERLSREIRTSLSGLLQTNVDVTANPLDTLKFTEFVRSLPV 99
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + + + LV L++ G ++ R + +E+ + K+ +
Sbjct: 100 PTSLHVFRMEPLRGHGLVVLESQLVYNLIDTFFGGEGLGKARVEGREFTAIEEVMIKKVV 159
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ + + +L + L + V + +E A + VL
Sbjct: 160 VACLKDIEKAWLPIEPVKTSLIRSEM--NPQFAAIVLPTDLVIVTRFEIELEQAAGNLVL 217
Query: 200 IIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+P + S Q ++E + VN+ ++ + + + ++
Sbjct: 218 CLPYAMIEPLRAKLASGFQAETEEIDVAWRKRLQEIILESTVNLRVQLGTTEISGERLIY 277
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L+ G VI + K +G G R+ ++
Sbjct: 278 LQPGDVIQLDNDAKDMLTGYVDGLPKVRGFAGVQRGFQAFRVEKKL 323
>gi|254470104|ref|ZP_05083508.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
gi|211960415|gb|EEA95611.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
Length = 409
Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 100/298 (33%), Gaps = 4/298 (1%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ L + + + + +V++S S + +F
Sbjct: 97 GDEGGIRALINSAMVSYERLPMLEIVFDRLVRLTTTSLRNFTSDNVEVSLDSMTNVRFGD 156
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVE 131
++S + W + ++L+ ++++ LLG + ++ R +T+E
Sbjct: 157 YLNSIPLPAILGVFKAKEWDGFGLVTVESSLIYSIIDVLLGGGRGSSPTRVEGRPYTTIE 216
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
L +R I I Q S LE + + + + +E
Sbjct: 217 SNLVRRMIEIILLDAEQAFGPLSPVSFPLERLET--NPRFAAISRPANAAIMVELRIDME 274
Query: 192 NVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ +++P TL + L + + + A + Y V +D +
Sbjct: 275 DRGGKVEIVLPYATLEPIRDLLLQMFMGEKFGRDPIWEEHLATEVYSSEVQVDAVLYENT 334
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
L+ V+ L++GQ + F + + G ++ +G V +I I+ ++ +
Sbjct: 335 IPLQRVLNLEVGQTLLFDTGPRDPVQVKCGGVQLTEGLMGHVDDRISIEISKKLKQPK 392
>gi|168334557|ref|ZP_02692713.1| flagellar motor switch protein FliM [Epulopiscium sp. 'N.t.
morphotype B']
Length = 327
Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 6/291 (2%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
+ + +G Y + + + M V I S ++ FS S
Sbjct: 41 FARPTKFSREHLRTLELMGENYARLISQYLSGLMRTLVPIKVVSSEAITFSDFTSSLSNP 100
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ +N + S N+ LE LLG + + R +++E + R +
Sbjct: 101 IALAIVDPYPLKNNMLLELSTNVAFAFLERLLGGEGTELEHV--REFTSIELVILIRVLE 158
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
+ + P + + E V I ++ V L
Sbjct: 159 HFVDYMREPWENMVALKPRMSRVET--NSQILNMIAPTEMVALITFSIQFGAVDGLMNLC 216
Query: 201 IPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
IP T+ +S + + + + N+ + + T+K+ +
Sbjct: 217 IPYLTVEPIMDKLNTSYQFQSSDDKKAERNTNVEYLLKRANIPMKAVVGQTHITVKEFIE 276
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L+IG +I + + + G ++I ++ +
Sbjct: 277 LQIGDIIRLDTTIDSLIDVYVGNVVKFKAVPGIHKNKSAVQIKQILDKEDD 327
>gi|39995529|ref|NP_951480.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
gi|39982292|gb|AAR33753.1| flagellar motor switch protein FliM [Geobacter sulfurreducens PCA]
gi|298504529|gb|ADI83252.1| flagellar motor switch protein FliM [Geobacter sulfurreducens
KN400]
Length = 328
Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 4/282 (1%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + + + ++ ++ V+I S KF I + +
Sbjct: 47 KGLVPNLDIIYDGFIRYQRGTLSNRLGRIVEIKKLGAGSYKFDDFIQTLPSPVCMAIYKA 106
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVLN 147
I + LV T+++ +LG + T Q NR +++E +L ++ + + L
Sbjct: 107 DPLKGAALIAFDSTLVFTIVDCILGGTGMTSVQTSANRMFTSIELRLVQKIVQDMLVDLE 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + +L + V T+ M + I+ + V +P T+
Sbjct: 167 KAWAPLYAAKMSL--LRMEMNPRLVNIVPPEYQVVTMEMQIQIDQLEGKMVFAVPYMTIE 224
Query: 208 KTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+Q +++ + +++ + +L D+++L G I
Sbjct: 225 PIRDKLKSGAQFDLMAIDPQWSFRLSKELLEAPLDVSVEVGGAVISLNDLLSLVPGDTIM 284
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + G ++ G N ++IT+ + +
Sbjct: 285 LDTPCTSDLTVKVGGVPKFTGMPGIRHGNKALQITNVVGKGE 326
>gi|83858803|ref|ZP_00952325.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83853626|gb|EAP91478.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 385
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 37/294 (12%), Positives = 102/294 (34%), Gaps = 4/294 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 83 ERSGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 142
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG + ++ R +T+E+
Sbjct: 143 LNSIPLPAILAVFRAKQLDNYGLLTVDSNLIYSIVDVLLGGRRGTSAMRVEGRPYTTIER 202
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R I + A Q + E +L+ + + + + +E+
Sbjct: 203 TLVQRMIEVVLADARQAFAPLTEVDFDLDRVET--NPRFAAIARPANAAILVKLRIDMED 260
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ +
Sbjct: 261 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWESHLATELWSTKMEVSAVLDEMQK 320
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
L +V+ LK+G + L + +GR+G N +R+ ++
Sbjct: 321 PLGEVMQLKVGDTLMLDAGPDGLIELRCGTVPLAHGHMGRIGHNIGVRLDRPLS 374
>gi|167645399|ref|YP_001683062.1| flagellar motor switch protein FliM [Caulobacter sp. K31]
gi|167347829|gb|ABZ70564.1| flagellar motor switch protein FliM [Caulobacter sp. K31]
Length = 377
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 33/288 (11%), Positives = 94/288 (32%), Gaps = 4/288 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 75 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 134
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 135 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 194
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + + S L+ + + + + +E+
Sbjct: 195 VLVQRMVEVVLHDAKAAFEPLHPVSFTLDRLET--NPRFAAIARPANAAILVKLRIDMED 252
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ ++
Sbjct: 253 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQL 312
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
L V+ LK+G + + L A + +GR + +R
Sbjct: 313 PLSRVLDLKVGDTLMLNATTDSLVELRAGSIPLTRGRMGRRNHSIAVR 360
>gi|257871319|ref|ZP_05650972.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
gi|257805483|gb|EEV34305.1| flagellar motor switch protein fliM [Enterococcus gallinarum EG2]
Length = 332
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 42/299 (14%), Positives = 94/299 (31%), Gaps = 10/299 (3%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
K + + K + ++ +V + + + + IHS +
Sbjct: 36 DFRRPTKLSKEYVNTLHMIFEDFSKMSSSMLSTQLRTNVSLQLAAIEQVSYDEFIHSIPK 95
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL------YNRSLSTVEKK 133
+ S I + L + L+E L G + +S + +E
Sbjct: 96 FTLLGLFHSQPLSGIQMIEMNPQLCMMLVELLCGGLDVYQNKPIEMDFSEKKSFTDIETA 155
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
+ + +AQ V L+ + N NE V + + I V
Sbjct: 156 ILEEVVAQFVRVYQNVWKDIVALDSVLDGIDT--NPQLMQNMSPNEPVVLVTFTIKIFEV 213
Query: 194 ASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L IP + + ++ ++D + + +N++ + +
Sbjct: 214 KHFINLCIPYVFFEGIIDKLSFRNWFDSNQPVNQDDSRELQKSLNGVGLNLEVLLGHAQM 273
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+L + + L+ G VI + +GK + + G+ I + D++ +QK
Sbjct: 274 SLSEFLHLEEGDVIKLDKKITEPLETFIDGKPYFRAKPGKQEDRLAIELLDKLEEEQKL 332
>gi|254504068|ref|ZP_05116219.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
DFL-11]
gi|222440139|gb|EEE46818.1| flagellar motor switch protein FliM, putative [Labrenzia alexandrii
DFL-11]
Length = 319
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 49/316 (15%), Positives = 120/316 (37%), Gaps = 7/316 (2%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS + + + RL G + + + + + ++K IS +
Sbjct: 9 QSTSNSERAM---ITDRLLDAAGISVDRLPMLPVVFDRMARLMADVMRQKSPSPSYISVS 65
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
++ + ++ F+ N + + W + +G + + TL++ L GA P
Sbjct: 66 YVENNRIGDVLDEFESNALVAVLYSPEWDARVLVGFDRDFIFTLVDVLFGADGTEPPIDE 125
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R S +E ++A+ + L + + E++ +E + SN
Sbjct: 126 ERPFSNIETRIARTIFEIAAKSLAESFAPIAETTLKIERIE--SRMDFAVVGRSNNPAVV 183
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNI 242
+ +++P TL + + + F + + V +
Sbjct: 184 GRLLQQAIGRGGEVFVVLPHATLNPLRQALSQVLSGEMSGRDKQWTQHFHNEIQRTEVKL 243
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + ++ L ++ LK+GQVI ++ L+ N + I++C+LG++ +YT++I +
Sbjct: 244 EAILEEREMHLGELSNLKVGQVIELQATARSPVTLACNDQPIFTCQLGQLDGSYTLQIEE 303
Query: 303 RI-NFDQKSLKNFLHK 317
I ++ + ++
Sbjct: 304 LIHEEEKDLFDDLRNR 319
>gi|302874572|ref|YP_003843205.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
gi|307690817|ref|ZP_07633263.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
gi|302577429|gb|ADL51441.1| flagellar motor switch protein FliM [Clostridium cellulovorans
743B]
Length = 331
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 41/275 (14%), Positives = 97/275 (35%), Gaps = 7/275 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + Y + + ++ +V + S + + IHS + + +
Sbjct: 48 SKDHIRTLELIHDNYARIISSYLTAQVRSNVKVKIESVEQTTYEEFIHSIQNPTILTVFK 107
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + N + V +++ LLG + E + NR + ++K + R + + L
Sbjct: 108 MPPLAGNILFETNPQFVYQIIDILLGGTGE--GKYKNREFTDIDKNIITRINEGLISNLK 165
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S E +P +E N +E V I + I + + IP +
Sbjct: 166 LAWSEVLEVNPEIETIET--NPALNQTLAPHEPVALIIFTIEIGESRTYINICIPFICIE 223
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
K + S+ + E + K + + + + T++D + L +G V
Sbjct: 224 KYLDHLEIKHWYHDSSDEEDEVTKEYLRMKLDSVQLVSEVILGNASVTVEDFLNLTVGDV 283
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + + + + + G +GK ++
Sbjct: 284 VTLERKFEDPLEVVIEERPHFLAKPGIIGKKTGVQ 318
>gi|222823278|ref|YP_002574851.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
gi|222538499|gb|ACM63600.1| flagellar motor switch protein FliM [Campylobacter lari RM2100]
Length = 363
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+I S + + S F+ S
Sbjct: 51 SKEQLRSIKGIHDKLARNLASQISSMMRSIVEIKLHSVDQMTYGEFLMSLPSPTSFNVFS 110
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG ++ L R L+ +E L + I L
Sbjct: 111 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSFDTL--RELTEIELNLLDSILRIIMQRLK 168
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P++E + NE V + M + I N + + P L
Sbjct: 169 ESWMNVTEIYPSVEAKESSPNV--VQIVSQNEIVIMVVMEIIIGNSSGMVNICYPVVHLE 226
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + + + + LK G ++
Sbjct: 227 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVIYEAMLGKTFINVNEFLDLKQGDIL 286
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
AI++ + KE++ ++G +I+I + I D+ +K L K
Sbjct: 287 KLDRSADDKAIVAIDKKEVFLAQVGLHRFRKSIKILELIKTDKDEIKEMLEK 338
>gi|134300220|ref|YP_001113716.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
MI-1]
gi|134052920|gb|ABO50891.1| flagellar motor switch protein FliM [Desulfotomaculum reducens
MI-1]
Length = 330
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 47/277 (16%), Positives = 98/277 (35%), Gaps = 7/277 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + L Y + L + + I S + I+S V + SL
Sbjct: 49 KEQLRTLHVLHEGYARLLSNFLSGYLRTPITIEIASIGQFTYEEFINSVPSPTVMTIFSL 108
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + + + +++ G E P+ R L+ +E ++ R I ++ L
Sbjct: 109 APLKGSALMETNLQFLFPIIDLQFGGLGEMPPKT--RELTDIELSVSNRIIKRLLDHLTI 166
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVLIIPQETLL 207
SP +E + N+ V I + + E V L +P L
Sbjct: 167 SWKDIMSVSPKVESIDA--NPHLHQLMSPNDIVVVITFSTGVAEEVRGLINLCLPYSLLD 224
Query: 208 KTTLI--SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ K+ Q + + + +V I + + T+KD + L++G V+
Sbjct: 225 PILSKFSMANQFTKTTEQDQKELMALEYWLGESDVAISVVMGEAQITVKDFLQLQVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
P + + + Y ++G VG++ +++T
Sbjct: 285 PLGRGLTQDLDMYVDEELKYKVQVGTVGQSLAVQVTS 321
>gi|208434362|ref|YP_002266028.1| flagellar motor switch protein [Helicobacter pylori G27]
gi|208432291|gb|ACI27162.1| flagellar motor switch protein [Helicobacter pylori G27]
Length = 334
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 9 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 68
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 69 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 126
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 127 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 184
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 185 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 244
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 245 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 304
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 305 SEKERTKEILEM 316
>gi|242281039|ref|YP_002993168.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM
2638]
gi|242123933|gb|ACS81629.1| flagellar motor switch protein FliM [Desulfovibrio salexigens DSM
2638]
Length = 326
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 49/302 (16%), Positives = 93/302 (30%), Gaps = 10/302 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
R+ + + + + M VDI+ S
Sbjct: 32 DSGVVSFDLANQDRIIRG------RMPVLEIVNDRFARLATNNLANTMRKRVDINPISID 85
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
KF + S S + N + + LV L+E+ G S ++ R
Sbjct: 86 MSKFGDFMRSLPVPTSLSIFKMDPLRGNAILVVDSRLVFALVESFFGGSGSQP-KVEGRD 144
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ +E+ + R + + L E L + ++ V I
Sbjct: 145 FTPIEQAIVDRVVKIALSNLEDSWRPVHEVHLELVR--SEVNPQFAAIVPPSDVVVVITF 202
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +EN S ++ +P TL S Q++ + F + + V++ R
Sbjct: 203 EVELENAIGSLIVCLPYSTLEPIRSKLHASFQSERLEIDHVWVSRFKERLLETPVDLLVR 262
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ K T + ++ L+ G ++ E+ G Y GRV N +I I
Sbjct: 263 LGKTKITGRQLLNLEEGDLLLLDTDEEDMLECEVGGVLKYLGSPGRVKANRAFQIAQAIE 322
Query: 306 FD 307
Sbjct: 323 PK 324
>gi|291519586|emb|CBK74807.1| Flagellar motor switch protein [Butyrivibrio fibrisolvens 16/4]
Length = 272
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 37/275 (13%), Positives = 96/275 (34%), Gaps = 7/275 (2%)
Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
+ Y + L + ++ + + ++ + +S + + +N
Sbjct: 2 EIIFEHYGRLLSTNLPIFLRKNIQVEVINSEAVTYMEFSNSLSNPVLLGIVDFAPLETNI 61
Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
+ ++NL +++ +LG E + ++ R S +E + +R + +L + +
Sbjct: 62 IVEMASNLGFAMVDRMLGGVGEPLDKV--RDFSEIELLIIERVMTSCVELLREPWENVLD 119
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL- 214
+ P LE + +E + + +N+ I +V + +P TL
Sbjct: 120 AHPRLERIET--NSQFAQIISPSEMIAIVTLNIKIGDVEGLMNICLPFITLEPVMDKLNT 177
Query: 215 --SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
++ E D + + + + T+ D L++G ++ +
Sbjct: 178 KFWYSSQKEKTGASFSDTVEALISRAKIPVKAVLGNSVITVADFSQLQVGDIVKLDTKVD 237
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ ++ G GK Y +R+T I +
Sbjct: 238 EELDVFVGDIRKFAALPGASGKEYAVRVTQIIREE 272
>gi|323490151|ref|ZP_08095371.1| flagellar motor switch protein FliM [Planococcus donghaensis
MPA1U2]
gi|323396199|gb|EGA89025.1| flagellar motor switch protein FliM [Planococcus donghaensis
MPA1U2]
Length = 327
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 13/299 (4%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+N R + + S + + + L F ++ V +
Sbjct: 29 RNVQAYDFKKALRF------SQDQIRTLSRIHENFSRLLSSYFSAQLRTYVQVGVEVVAE 82
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + ++ + + + + S N+V + + LLG + + L
Sbjct: 83 ISYEEFVENVQKKSMLGVFEAAPLQGSMVMEFSPNVVHVMFDRLLGGQGHVLEKDS--EL 140
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E + +R A+ + + + SP L + T NE V + +
Sbjct: 141 TEIEISVIERVFAKALDCFQEAWLSVVKLSPEL--KEIEVNSQFLTTSPPNETVILVKLQ 198
Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
I NV + +P L + N+ + + K + + I
Sbjct: 199 TKIGNVEGVINICLPHVVLEQILPKLSAKHWLANQKKAIEAHEVVALEEKLHGTKMEIKA 258
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ D + LK G VI + L + K + + G I++T+
Sbjct: 259 VLGQSMIEFGDFLNLKKGDVIRLDESYDSPVTLQVDNKLKFYAQPGVSKGRMAIQVTEV 317
>gi|197104384|ref|YP_002129761.1| flagellar motor switch protein FliM [Phenylobacterium zucineum
HLK1]
gi|196477804|gb|ACG77332.1| flagellar motor switch protein FliM [Phenylobacterium zucineum
HLK1]
Length = 358
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 36/281 (12%), Positives = 101/281 (35%), Gaps = 4/281 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + + + +V++S + S +F ++S + S
Sbjct: 70 SYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDYLNSIPLPAILSVFR 129
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
++ + +NL+ ++++ LLG ++ R +T+E+ L +R + + A
Sbjct: 130 AEELNNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIERVLVQRMVEVVLADA 189
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ S L+ + + + + +E+ L++P TL
Sbjct: 190 REAFEPLTPVSFTLDRLET--NPRFAAIARPANAAILVKLRIDMEDRGGRIELLLPYATL 247
Query: 207 LKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
++ + + A + + N+ + ++ ++ +L+ V+ LK+G +
Sbjct: 248 EPIRKMLLQQFMGEKFGRDNIWESHLATELWTTNMEVRAVLDEQQVSLQKVLDLKVGDTL 307
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ L A + +GR + +R+ ++
Sbjct: 308 MLNATPDSLIELRAGAIPLTRGRMGRRNHHIAVRVEAPLSP 348
>gi|329849711|ref|ZP_08264557.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum
C19]
gi|328841622|gb|EGF91192.1| flagellar motor switch protein FliM [Asticcacaulis biprosthecum
C19]
Length = 388
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 36/290 (12%), Positives = 101/290 (34%), Gaps = 4/290 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 84 ERSGIRAIINSAMVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 143
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 144 LNSIPLPAILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAALRIEGRPYTTIER 203
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R + + Q + NL+ + + + + +E+
Sbjct: 204 VLVQRMVEVVLNDARQAFEPLTAVNFNLDRLET--NPRFAAIARPANAAILVKLRIDMED 261
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ L + + A + + + + ++ ++
Sbjct: 262 RGGRIELLLPYATLEPIRKMLLLQFMGEKFGRDNIWESHLATELWTTQMEVRAVLDEQQV 321
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
L V+ LK+G+ I + + L + + +GR G + +R+
Sbjct: 322 PLSRVLNLKVGETIVLNAQADSPVQLRCGQIPLTTGRMGRKGHSIAVRVD 371
>gi|268678938|ref|YP_003303369.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
DSM 6946]
gi|268616969|gb|ACZ11334.1| flagellar motor switch protein FliM [Sulfurospirillum deleyianum
DSM 6946]
Length = 353
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 103/310 (33%), Gaps = 6/310 (1%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + + ++L K + + + L M V+I S
Sbjct: 25 SSELDNTESKQVILYDFKRPNRVSKEQLRAVKGIHDKMARNLASQISAIMRSIVEIQLHS 84
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + S F+ S+ N I + ++ +++ LLG E+
Sbjct: 85 VDQMTYGEFLMSLPSPTSFNVFSIKPLDGNCIIEINPSIAFPMIDRLLGGLGESYE--AT 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R L+ +E L + I L + + + P +E + NE V +
Sbjct: 143 RELTDIELNLLDAILRIIMQRLKEGWAPITDMYPAIETKESSPNV--VQIVSQNEIVIMV 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNI 242
M + I N + L P L + + + + V
Sbjct: 201 VMEIIIGNSSGMINLCYPVIYLEPILSRLANRDIMLGETSAKKSRNKELNTLISRAEVFN 260
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ I + ++ +++ LK G ++ AI+ + KE++ E+G + +I+I
Sbjct: 261 EAIIGQAELSVGELLELKKGDIVRLDRAADDKAIVMIDKKELFLAEIGLHRFHKSIKIER 320
Query: 303 RINFDQKSLK 312
+ D+ +K
Sbjct: 321 LVKTDKDEVK 330
>gi|109947667|ref|YP_664895.1| flagellar motor switch protein FliM [Helicobacter acinonychis str.
Sheeba]
gi|109714888|emb|CAJ99896.1| fliM [Helicobacter acinonychis str. Sheeba]
Length = 354
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ +P + L K + S+ + L M V+I S
Sbjct: 29 KDITPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNRELQALLSSVSVDMIVL 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKEHTKEILEM 336
>gi|323703196|ref|ZP_08114849.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
DSM 574]
gi|323531855|gb|EGB21741.1| flagellar motor switch protein FliM [Desulfotomaculum nigrificans
DSM 574]
Length = 330
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 7/286 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + L Y + L + + I S + I+S V + SL
Sbjct: 49 KEQLRTLQVLHEGYARLLSNFLSGYLRTTITIEVASIGQFTYEEFINSVPTPTVMTIFSL 108
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
S + + + L++ G S + ++ R L+ +E +A R I ++ L
Sbjct: 109 SPLKGTALMETNLQFLFPLIDLQFGGSGDMPMKV--RELTDIELSVANRIIKRLLDHLTV 166
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
+P +E + N+ V + + + N V + +P L
Sbjct: 167 TWKDIATITPKIESIDA--NPHLHQLMSPNDIVAVLTFSTAVGNEVKGLINMCLPYNFLD 224
Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + Q E ++ + +V I + ++KD + L++G V+
Sbjct: 225 PVLAKFSAANQFTRDNEQKEQDLEALEFWLGESDVEISVVVGETDISVKDFLQLQVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
P + + + Y ++G VG++ +++T + +
Sbjct: 285 PLARGFNQDLDMYVDNELKYKVQVGTVGQSLAVQVTSLAEEAWEIV 330
>gi|149179192|ref|ZP_01857759.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
gi|148841965|gb|EDL56361.1| flagellar motor switch protein fliM [Planctomyces maris DSM 8797]
Length = 349
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 5/293 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + +L + + + +++ S +S + S + F+
Sbjct: 53 SKEQMRAFRALHESFSREFGAALSGMLRSIIEVKLISVDQLTYSEFVFSLENPTCFNLLE 112
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + S +++ +++ LLG + NR+L+ +E +L R +
Sbjct: 113 SETLDGHIILDISPSIIFPIIDRLLGGDGHSHGAYPNRALTEIEIRLVSRITGLAIEGIE 172
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S + + + NE + I+ +T+ L IP T+
Sbjct: 173 SAWSNLCDWKLRVS--QVESNPQLVQIVPPNEVIVLISFEVTMGETRGIINLCIPFNTIE 230
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S K ++ + + + ++ K T +V+ L +G V
Sbjct: 231 PLSNKLTSDTWSAYKKKSPDLRQQLNLEASVSKSKIAMRVELDNSKLTAGEVLNLAVGDV 290
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
I + G +++ G + I I + + ++ L K
Sbjct: 291 IMCNKGSAQSLTVELEGSPVFTAFPGVYKGHKAISIEKMLAIPRDVIEERLKK 343
>gi|170741398|ref|YP_001770053.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
gi|168195672|gb|ACA17619.1| flagellar motor switch protein FliM [Methylobacterium sp. 4-46]
Length = 303
Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 57/303 (18%), Positives = 113/303 (37%), Gaps = 3/303 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ RL G + + + K + S S +SG F ++
Sbjct: 3 DVRDRLLDASGLSPDRLPMLNVIFDRLATACADNLKHLAVSPIFYSLMSVESGLFGDLLE 62
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N V W + +G + V T++E LLGA P R+ S++E ++A
Sbjct: 63 PYEANAVVGIFYSPQWDGHLLVGLDRDFVFTMVEVLLGADGSEPPVEEARNFSSIELRIA 122
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ T QI L + ++ LE + + + N
Sbjct: 123 QMTFEQIGKALEAAFALVSVATLKLERTET--RMDFAIIGRRSNKAVAAKFLLQALNRGG 180
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
LIIPQ L +S ++ + + + V + + + TL
Sbjct: 181 EMFLIIPQAVLNPMRQSLSKVLTGESTSRDPRWEKQISTEVRKTEVTLRAVLEERTLTLG 240
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ LK+GQV+ ++ L N + ++ C++G+ Y +R+ D+I+ D++ +
Sbjct: 241 EIADLKVGQVLTLDATPRSRVKLQGNDQALFWCQVGQANGAYVLRVEDQIDQDKEFMDGV 300
Query: 315 LHK 317
L +
Sbjct: 301 LAR 303
>gi|317051535|ref|YP_004112651.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
gi|316946619|gb|ADU66095.1| flagellar motor switch protein FliM [Desulfurispirillum indicum S5]
Length = 329
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 13/306 (4%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
K S R+ K + +L + + + D++ S
Sbjct: 33 TKKKVSLYDFKRPDRV------SKDQMRSIKNLHDKFARNFSSSLSGYLRSITDMNLISV 86
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + S F+ S+ N + + +LV +++ LLG E I ++ R
Sbjct: 87 DQMTYGEFLMSLPNPTSFNIISMLPLDGNAVLEVNPSLVFPIIDKLLGGQGEPIDEV--R 144
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
++ +E+ + +A L + +E NE V +
Sbjct: 145 EITDIEQNVIGGVLAIALRELAEVWQPIINIRFKIELRET--SPHVIQIVSQNEVVILLV 202
Query: 186 MNMTIENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ + +V+ + IP L + + + + N+
Sbjct: 203 FEIKVGDVSGMMNICIPAIVLEPIMQKIDSQDWLIGAKKMHATANVQQITSIVSKSRTNL 262
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ TL++++ L+IG ++ + + +L + Y E+G + N +I
Sbjct: 263 QAVLGESTMTLREILDLEIGDILTLSTKVRDPMVLQVGDMKKYYGEIGIIDNNKAFKIHR 322
Query: 303 RINFDQ 308
+I +
Sbjct: 323 KIVKED 328
>gi|291288740|ref|YP_003505556.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
12809]
gi|290885900|gb|ADD69600.1| flagellar motor switch protein FliM [Denitrovibrio acetiphilus DSM
12809]
Length = 336
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 51/305 (16%), Positives = 102/305 (33%), Gaps = 12/305 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K S R+ K + +L + + + DI+ TS
Sbjct: 36 KKISVYDFRRPDRV------SKEQLRSIRNLHDKFARNFSSTLSNYLRTITDITLTSVDQ 89
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S + F+ S+ N + + +LV +++ LLG + + + Q R L
Sbjct: 90 MTYGEFLMSLPDPTSFNIISMIPMEGNAVLEINPSLVFPIVDKLLGGTGKPLFQT--REL 147
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+++E+ + + I L + + L+ + NE V +
Sbjct: 148 TSLEQHIMDGILGLILKDLEEVWRQIIP-NIRLKKELSENSPHIIQIVSQNEVVILVVCE 206
Query: 188 MTIENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ V L IP L S + + D V
Sbjct: 207 VKFGEVLGMMNLCIPAIVLEPVLGKISSSDWLIGAKKGLQGEKEDEIMHMLNDTEVPTSI 266
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ K T++DV+ L+ G ++ F ++ + N K+ + E+G +G ++IT I
Sbjct: 267 YLGHNKLTIEDVLGLQNGDLVMFNVKQDRPVEIHFNNKQKFLGEVGTLGVKKAVKITQFI 326
Query: 305 NFDQK 309
Sbjct: 327 TESDD 331
>gi|332702324|ref|ZP_08422412.1| flagellar motor switch protein FliM [Desulfovibrio africanus str.
Walvis Bay]
gi|332552473|gb|EGJ49517.1| flagellar motor switch protein FliM [Desulfovibrio africanus str.
Walvis Bay]
Length = 325
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 42/299 (14%), Positives = 93/299 (31%), Gaps = 10/299 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
R+ + + + + M VD++ S
Sbjct: 30 QEDDGAVTFDLSNQDRIIRG------RMPVMEIINDRFARLATNALANAMRKRVDVNPIS 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
KF + S + + N + LV L+EN G S ++
Sbjct: 84 IDMSKFGDFMRSLPVPTSINIFKMEPLRGNALCVVDSRLVFALVENFFGGSGTQP-KVEG 142
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + +E+ + + + + + + E ++E + +E V +
Sbjct: 143 RDFTHIEQAIIGKVVDLALTNMEEAWAPVHEV--HIELIRAEINPQFAAIVPPSEVVVVV 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ +EN SF++ +P T+ S Q++ I F + + V +
Sbjct: 201 TYEVELENAIGSFIVCLPYATIEPIRAKLYASFQSERLEVDHAWISRFKERLMETPVEMV 260
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
R+ T + ++ + IG ++ + +G + GRV N ++
Sbjct: 261 VRMGKTSITGRQLLNMDIGDILLLDTDVDDLLVAEVDGVRKFHGIPGRVKGNRAFQVLK 319
>gi|224373367|ref|YP_002607739.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
gi|223588573|gb|ACM92309.1| flagellar motor switch protein FliM [Nautilia profundicola AmH]
Length = 356
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 44/292 (15%), Positives = 97/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + ++ + L M V+I S + + S F+ S
Sbjct: 51 SKEQLRSIRAIHDKMARSLASDISSLMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 110
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L I + ++V +++ LLG S R + +E L + + ++ +
Sbjct: 111 LKPLDGKGVIELNPSIVFPMIDRLLGGSGAPFETT--REFTDIELNLLDQILKVVTQNMK 168
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + P +E + NE V + M + I + + P T+
Sbjct: 169 EVWSPIMDLYPIIEAKESSPNV--VQIVAQNEIVIMVIMEIIIGQTSGMMNICYPVITIE 226
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + + +K V+ L++G +I
Sbjct: 227 SLLPRLANRDLMLNETSGRKSRNKELRALLRGAKIELEAVLGYAELNMKQVLDLEVGDII 286
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
I+ +G+E + E G +I+I + + + +K L K
Sbjct: 287 KLNRPADDTVIVKVDGREKFIAEFGVRRYRRSIKIKEILKTEHDEIKEILQK 338
>gi|207092363|ref|ZP_03240150.1| flagellar motor switch protein FliM [Helicobacter pylori
HPKX_438_AG0C1]
gi|317012255|gb|ADU82863.1| flagellar motor switch protein FliM [Helicobacter pylori
Lithuania75]
Length = 354
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + I
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|148266212|ref|YP_001232918.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
gi|146399712|gb|ABQ28345.1| flagellar motor switch protein FliM [Geobacter uraniireducens Rf4]
Length = 328
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 37/268 (13%), Positives = 92/268 (34%), Gaps = 3/268 (1%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ + ++ ++ VDI ++ KF + + + +
Sbjct: 56 IYDGFIRYNRVTMSNRLGKMVDIKKDGARTYKFDDFLQILPSPVCMAIYKIEPLKGAALV 115
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
N LV T+++++LG + NR + +E +L ++ + + + +
Sbjct: 116 AMDNTLVFTIVDSILGGTGAPSIPSNNRLFTPIELRLMEKIVKDALVDMEKAWAPLLAVK 175
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
NL + S V T+++ + IE + +L +P T+ S
Sbjct: 176 MNL--LRMEMNPRLVNIVPSEYQVVTMSLKIQIEETVGTMILAVPYMTIEPVRDKLKSGM 233
Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + + I + TL +++ L G I +R ++ +
Sbjct: 234 QVDMMAVDPQWSYRLSEELAEAPLEISVEMGNSVITLDELLNLAPGDTIMLNNRGRSELL 293
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRI 304
+ G ++ G N ++I+ +
Sbjct: 294 VKVGGVNKFTGIPGVRDGNKAVKISRIL 321
>gi|217031646|ref|ZP_03437151.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
gi|298736644|ref|YP_003729170.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
gi|216946846|gb|EEC25442.1| hypothetical protein HPB128_21g204 [Helicobacter pylori B128]
gi|298355834|emb|CBI66706.1| flagellar motor switch protein FliM [Helicobacter pylori B8]
Length = 354
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + I
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|189426342|ref|YP_001953519.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
gi|189422601|gb|ACD96999.1| flagellar motor switch protein FliM [Geobacter lovleyi SZ]
Length = 331
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 97/271 (35%), Gaps = 4/271 (1%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ + +F ++ V+I +S KF + + + L I
Sbjct: 56 VYDGFIRFNRITLSNRLRKVVEIKKVGARSYKFDDFLQTLPSPVCMAIFKLDPLKGAALI 115
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
++L +++++LG + T L NR +T+E +L + +A + A L + + +
Sbjct: 116 AMDSSLAFAIVDSVLGGTSRTALAL-NRLFTTLELRLVEMVLADVLADLEKSWAPLYPAK 174
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS-LSS 216
+L + T V T+ + + IE + + ++P T+
Sbjct: 175 LSL--LRMEMNPRLVTIVPPEYQVVTMTVKVHIEENVGTMIFVVPIMTIEPIRDKLKEGM 232
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q + + + + + +L++++ L++G I + +
Sbjct: 233 QFDLMAIDPQWSYRLSSEILDAPMELSVELGNSTISLRELLDLEVGDTIMLDKPCTSELL 292
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ G Y G N ++I+D I+
Sbjct: 293 VKVEGVPKYQGIPGIRHGNKAMQISDIISTK 323
>gi|317013858|gb|ADU81294.1| flagellar motor switch protein FliM [Helicobacter pylori
Gambia94/24]
Length = 354
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|15611461|ref|NP_223112.1| flagellar motor switch protein FliM [Helicobacter pylori J99]
gi|4154924|gb|AAD05972.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
gi|307637112|gb|ADN79562.1| flagellar motor-switch protein [Helicobacter pylori 908]
gi|325995703|gb|ADZ51108.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997299|gb|ADZ49507.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 354
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|322379819|ref|ZP_08054116.1| flagellar motor switch protein FliM [Helicobacter suis HS5]
gi|321147787|gb|EFX42390.1| flagellar motor switch protein FliM [Helicobacter suis HS5]
Length = 353
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 6/291 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S+ + L M V+I S + + S F+ S
Sbjct: 49 SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++V +++ LLG Q+ R S +E L + Q+ +L
Sbjct: 109 MKPVGGNGILEVNPSIVFPMIDRLLGGKGSAYDQM--REFSDIELNLLDTILKQVMQILK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E P ++ + NE V + M + I + L P ++
Sbjct: 167 EIWSPVTEFYPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + +V++ + + TLK+V+ L +G I
Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTI 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+++ + KE Y +G G TI+I + I ++ +K L
Sbjct: 285 RLNKVANDVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335
>gi|322378965|ref|ZP_08053379.1| flagellar motor switch protein FliM [Helicobacter suis HS1]
gi|321148641|gb|EFX43127.1| flagellar motor switch protein FliM [Helicobacter suis HS1]
Length = 353
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 51/291 (17%), Positives = 101/291 (34%), Gaps = 6/291 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S+ + L M V+I S + + S F+ S
Sbjct: 49 SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++V +++ LLG Q+ R S +E L + Q+ +L
Sbjct: 109 MKPVGGNGVLEVNPSIVFPMIDRLLGGKGSAYDQM--REFSDIELNLLDTILKQVMQILK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S E P ++ + NE V + M + I + L P ++
Sbjct: 167 EIWSPVTEFYPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + +V++ + + TLK+V+ L +G I
Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVAAFLGGVQLTLKEVLDLVVGDTI 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+++ + KE Y +G G TI+I + I ++ +K L
Sbjct: 285 RLNKVANDVVVVNIDKKERYLATVGYKGYRKTIQIKEVIQTEKDRVKEILE 335
>gi|254779108|ref|YP_003057213.1| flagellar motor switch protein FliM [Helicobacter pylori B38]
gi|308184220|ref|YP_003928353.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
gi|254001019|emb|CAX28963.1| Flagellar motor switch protein FliM [Helicobacter pylori B38]
gi|308060140|gb|ADO02036.1| flagellar motor switch protein FliM [Helicobacter pylori SJM180]
Length = 354
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + I
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|210134611|ref|YP_002301050.1| flagellar motor switch protein FliM [Helicobacter pylori P12]
gi|210132579|gb|ACJ07570.1| flagellar motor switch protein [Helicobacter pylori P12]
Length = 354
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + I
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|188579889|ref|YP_001923334.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
gi|179343387|gb|ACB78799.1| flagellar motor switch protein FliM [Methylobacterium populi BJ001]
Length = 335
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 105/301 (34%), Gaps = 3/301 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
L AR+ G + S + K S + +SG+F +
Sbjct: 36 DLRARIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHFAASSTFYSLSGVESGRFGEFLD 95
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N V + W + +G + + T++E L G+ P R+ S +E ++A
Sbjct: 96 AYDANAVVGIFHAAEWDGHVLVGLDRDFLYTMVEVLFGSDGSEPPVEDERTFSAIELRIA 155
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L +++ LE ++ + + N
Sbjct: 156 QMVFEQVGKALESSFGLVSQTAFRLERTET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 213
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
LIIPQ L +S + A + + V + + + TL
Sbjct: 214 EMFLIIPQTVLNPLRPALAKVLTGESAARDPRWAQQIAAEVQKTTVRLRAVLEERHLTLG 273
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ LK+GQV+ T L N + ++ C G+ Y +R+ D IN +++
Sbjct: 274 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGAYVLRVEDAINPEKEGGHGL 333
Query: 315 L 315
L
Sbjct: 334 L 334
>gi|157364676|ref|YP_001471443.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
gi|157315280|gb|ABV34379.1| flagellar motor switch protein FliM [Thermotoga lettingae TMO]
Length = 330
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 101/295 (34%), Gaps = 8/295 (2%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L K ++ + + + + ++ +I+ S + I S
Sbjct: 37 LYDFRRPSKFSKEHIRVFDMIHENFARSISTYLSGRVRTFTNINLASIDQISYEEFIRSL 96
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ S + + + + + T+L+ +LG + R+ S +E + ++
Sbjct: 97 PAPSFITVFSAPEFVGSAILEMNLEIFYTILDLILGGPGIPNVK---RTPSDIELSIMRK 153
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+ I L+Q S + P +E + + NE + +++ +TI
Sbjct: 154 EVMNILTNLSQAWSEVYQFVPTIE--SVENNPQFVQIAPPNEMILLVSLYVTIAKTEGFL 211
Query: 198 VLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
+ P K E SE +++ + + + I + ++K
Sbjct: 212 NICWPSSLTEPFMDKLSSRTWFTAKREQLSEKMLEDLKQNVKTMKMKISAILGEAILSVK 271
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+++ L++G VI + ++ K + G + +++T + + +
Sbjct: 272 EILDLEVGDVIRLQTHKDDDVMVEVQSKPKFMARPGVFKGHRAVKVTRILKPEVE 326
>gi|15645645|ref|NP_207821.1| flagellar motor switch protein FliM [Helicobacter pylori 26695]
gi|108562841|ref|YP_627157.1| flagellar motor switch protein FliM [Helicobacter pylori HPAG1]
gi|2314176|gb|AAD08075.1| flagellar motor switch protein (fliM) [Helicobacter pylori 26695]
gi|107836614|gb|ABF84483.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
gi|317009061|gb|ADU79641.1| flagellar motor switch protein FliM [Helicobacter pylori India7]
Length = 354
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + I
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|163850084|ref|YP_001638127.1| flagellar motor switch protein FliM [Methylobacterium extorquens
PA1]
gi|163661689|gb|ABY29056.1| flagellar motor switch protein FliM [Methylobacterium extorquens
PA1]
Length = 344
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ R+ G + S + K S + +SG+F +
Sbjct: 45 DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 104
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N V W + +G + + T++E L G+ P R+ S +E ++A
Sbjct: 105 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 164
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L +++ LE ++ + + N
Sbjct: 165 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 222
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
LIIPQ L +S + + A + + V + + + TL
Sbjct: 223 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 282
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN +++
Sbjct: 283 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 342
Query: 315 L 315
L
Sbjct: 343 L 343
>gi|308182586|ref|YP_003926713.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
gi|308064771|gb|ADO06663.1| flagellar motor switch protein FliM [Helicobacter pylori PeCan4]
Length = 354
Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 49/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + I
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVIY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|160901604|ref|YP_001567185.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
gi|160359248|gb|ABX30862.1| flagellar motor switch protein FliM [Petrotoga mobilis SJ95]
Length = 359
Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 5/277 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + + + + L + VD+ Y S FS S S
Sbjct: 51 SREQLRTLQLIHESFARELSTYLSGRSRTFVDVKYASIDQITFSEFQKSLNSPTFIVIFS 110
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
++S + + +L +++ LLG T+ ++ R + +E + ++ A + +L+
Sbjct: 111 SEAFSGSAILQMGLDLGYVIIDRLLGGPGNTLEEI--RPPTEIEMNILRKESAVMLRMLS 168
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S +E NLE+ + NE I +++TI+NV L P +L
Sbjct: 169 KSWSNIEEFDANLENLET--NPQFVQVAPPNEMTILITLSVTIKNVQGFVNLCFPSSSLE 226
Query: 208 KTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ S +E+ + + +N+ + + L D + L++G VI
Sbjct: 227 PLNDKLTTRMWTTSYRHTEEFKENLRQSLLLSKLNLSAILGKTEIYLNDFLNLEVGDVIR 286
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L + I+ +G+ Y+++I ++
Sbjct: 287 LDSFYDEPIDLEIEERPIFKVNVGKSKGFYSVKIVEK 323
>gi|322421724|ref|YP_004200947.1| flagellar motor switch protein FliM [Geobacter sp. M18]
gi|320128111|gb|ADW15671.1| flagellar motor switch protein FliM [Geobacter sp. M18]
Length = 325
Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 3/284 (1%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+ + + ++ ++ VDI KF + +
Sbjct: 44 EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPSPVCMAIY 103
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ I + LV T+++++LG S Q NR +++E +L ++ + A L
Sbjct: 104 KMDPLKGAALIAFDSTLVFTIVDSILGGSGVPSGQGMNRLFTSIELRLVEKIVKDALADL 163
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ + +S NL + + V T++M + IE S +L IP T+
Sbjct: 164 EKAWAPLCPASMNLLRLEM--NPRLVNIVPAEYQVVTMSMKIQIEETVGSMILAIPFLTI 221
Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
Q + + ++I + +L D++ L G VI
Sbjct: 222 EPIRDKLKRGVQMDMMVMDPLWSYRLSEELMGAPMDISVEMGGATVSLADLLGLTPGDVI 281
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K + G + + G G N ++IT + +
Sbjct: 282 MLDSSGKDELSVKVGGTKKFMGIAGVSGGNKAVQITRALTGGED 325
>gi|213646780|ref|ZP_03376833.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 293
Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 32/271 (11%), Positives = 83/271 (30%), Gaps = 8/271 (2%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 200
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 201 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 260
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ L ++ LK G V+P ++
Sbjct: 261 LVANFADIPLRLSQILKLKPGDVLPIEKPDR 291
>gi|315453793|ref|YP_004074063.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
gi|315132845|emb|CBY83473.1| flagellar motor switch protein [Helicobacter felis ATCC 49179]
Length = 353
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 49/291 (16%), Positives = 100/291 (34%), Gaps = 6/291 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S+ + L M V+I S + + S F+ S
Sbjct: 49 SKEQLRSFRSIHDKMARSLSSQISAIMRSIVEIQLHSVDQMTYGEFLMSLPSPTSFNVFS 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + ++V +++ LLG + Q R S +E L + Q+ +L
Sbjct: 109 MKPVGGTGVLEVNPSIVFPMIDRLLGGKGSSYDQT--REFSDIELNLLDTILKQVMQILK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E P ++ + NE V + M + I + L P ++
Sbjct: 167 DIWNPVTEFFPTIDAKESSANV--VQIVAQNEIVIMVVMEIVIGHSRGMMNLCYPVISIE 224
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + +V++ + + TLK+V+ L +G I
Sbjct: 225 GILSKMGNRDVMLTETSSKKSRNKELQALVGGASVDVSAFLGSVRLTLKEVLDLVVGDTI 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+++ + KE Y +G G TI+I + I+ ++ +K L
Sbjct: 285 RLNKVANDTVVVNIDKKERYLATVGYQGYRKTIKIKEVIHTEKDRVKEVLE 335
>gi|297379637|gb|ADI34524.1| flagellar motor switch protein FliM [Helicobacter pylori v225d]
Length = 354
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIVPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|317177228|dbj|BAJ55017.1| flagellar motor switch protein FliM [Helicobacter pylori F16]
Length = 354
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P H + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQHSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q +R
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|317010690|gb|ADU84437.1| flagellar motor switch protein FliM [Helicobacter pylori
SouthAfrica7]
Length = 354
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMIVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|197120188|ref|YP_002140615.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
gi|197089548|gb|ACH40819.1| flagellar motor switch protein FliM [Geobacter bemidjiensis Bem]
Length = 325
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 93/284 (32%), Gaps = 4/284 (1%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+ + + ++ ++ VDI KF + +
Sbjct: 44 EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPNPVCMAIY 103
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ I LV T+++++LG S Q NR +++E +L ++ + A L
Sbjct: 104 KMDPLKGAALIAFDATLVFTIVDSILGGSGVQP-QGMNRLFTSIELRLVEKIVKDALADL 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ + +S NL + V T++M + IE S +L IP T+
Sbjct: 163 EKAWAPLCPASMNLLRLEM--NPRLVNIVPPEYQVVTMSMKIQIEETVGSMILAIPFLTI 220
Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
Q + + +++ + +L D++ L G I
Sbjct: 221 EPIRDKLKRGVQMDMMAVDPFWSYRLSEELMGAPMDLSVEMGGATISLSDLLHLTPGDTI 280
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K + G + + G G N ++IT +N +
Sbjct: 281 MLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALNAGGE 324
>gi|317180688|dbj|BAJ58474.1| flagellar motor switch protein FliM [Helicobacter pylori F32]
Length = 354
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q +R
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKEHTKEILEM 336
>gi|159184367|ref|NP_353588.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
gi|159139681|gb|AAK86373.2| flagellar motor switch protein [Agrobacterium tumefaciens str. C58]
Length = 319
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG +
Sbjct: 14 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 73
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E
Sbjct: 74 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 133
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
LA + +I+ VL ++ ++ ++ + ++ + TI M + I
Sbjct: 134 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 193
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T
Sbjct: 194 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 253
Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D +
Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313
Query: 311 LKNFL 315
L++ +
Sbjct: 314 LRHLM 318
>gi|240137217|ref|YP_002961686.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
AM1]
gi|240007183|gb|ACS38409.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
AM1]
Length = 344
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ R+ G + S + K S + +SG+F +
Sbjct: 45 DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 104
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N V W + +G + + T++E L G+ P R+ S +E ++A
Sbjct: 105 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 164
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L +++ LE ++ + + N
Sbjct: 165 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 222
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
LIIPQ L +S + + A + + V + + + TL
Sbjct: 223 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 282
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN +++
Sbjct: 283 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 342
Query: 315 L 315
L
Sbjct: 343 L 343
>gi|218528687|ref|YP_002419503.1| surface presentation of antigens (SPOA) protein [Methylobacterium
chloromethanicum CM4]
gi|254559229|ref|YP_003066324.1| flagellar motor switch protein FliM [Methylobacterium extorquens
DM4]
gi|218520990|gb|ACK81575.1| surface presentation of antigens (SPOA) protein [Methylobacterium
chloromethanicum CM4]
gi|254266507|emb|CAX22271.1| Flagellar motor switch protein FliM [Methylobacterium extorquens
DM4]
Length = 340
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 3/301 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ R+ G + S + K S + +SG+F +
Sbjct: 41 DIRTRIQEAGGLSLDRLPMLSVVFDRLATACSDAAKHLAASTTFYSLSGVESGRFGEFLD 100
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N V W + +G + + T++E L G+ P R+ S +E ++A
Sbjct: 101 AYDANAVVGIFQAPEWDGHVLVGLDRDFLYTMVEVLFGSDGAEPPVEDERTFSAIELRIA 160
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L +++ LE ++ + + N
Sbjct: 161 QMVFEQVGKALESSFGLVSQTAFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 218
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
LIIPQ L +S + + A + + V + + + TL
Sbjct: 219 EMFLIIPQTVLNPLRPALGKVLTGESAARDPRWAEQIAAEVQKTTVRLRAVLEERHLTLG 278
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ LK+GQV+ T L N + ++ C G+ +Y +R+ + IN +++
Sbjct: 279 EIAGLKVGQVLTLDATPATRIKLEGNDRPLFWCRAGQSQGSYVLRVEESINPEKEGGHGL 338
Query: 315 L 315
L
Sbjct: 339 L 339
>gi|222053613|ref|YP_002535975.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
gi|221562902|gb|ACM18874.1| flagellar motor switch protein FliM [Geobacter sp. FRC-32]
Length = 328
Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 89/267 (33%), Gaps = 3/267 (1%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ + ++ ++ V+I + KF + S + + I
Sbjct: 56 IYDGFIRYNRVNMSNRLGKMVEIKKVGARPYKFDDFLQSLPSPVCMAIYKIEPLKGAALI 115
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
+ V T+++++LG NR + +E +L ++ I + A + + +
Sbjct: 116 AVDSTFVYTVVDSILGGVGVPNIPANNRLFTPIELRLVEKIIRDVLADMEKAWAPLLAVK 175
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS- 216
NL + V T+++ + IE S +L +P T+ S
Sbjct: 176 MNL--LRMEMNPRLVNIVPPEYQVVTMSLKIQIEETVGSMILAVPYMTVDPIRDKLKSGL 233
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q + + + + I + TL +++ L G + + +
Sbjct: 234 QVDMMAVDPQWSIRLSEELKEAPLEISVEMGNSSITLAELLNLSPGDTVMLEESGRNELL 293
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303
+ G + + G G N ++I+
Sbjct: 294 VKVGGVKKFMGLPGVRGGNKAVQISRI 320
>gi|188527225|ref|YP_001909912.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
gi|188143465|gb|ACD47882.1| flagellar motor switch protein FliM [Helicobacter pylori Shi470]
gi|308061768|gb|ADO03656.1| flagellar motor switch protein FliM [Helicobacter pylori Cuz20]
gi|308063277|gb|ADO05164.1| flagellar motor switch protein FliM [Helicobacter pylori Sat464]
Length = 354
Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|20141429|sp|Q44457|FLIM_AGRT5 RecName: Full=Flagellar motor switch protein FliM
Length = 321
Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats.
Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG +
Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E
Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
LA + +I+ VL ++ ++ ++ + ++ + TI M + I
Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T
Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255
Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D +
Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315
Query: 311 LKNFL 315
L++ +
Sbjct: 316 LRHLM 320
>gi|1480838|gb|AAC45322.1| FliM [Agrobacterium tumefaciens]
gi|2459705|gb|AAB71781.1| FliM [Agrobacterium tumefaciens]
Length = 321
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 92/305 (30%), Positives = 168/305 (55%), Gaps = 2/305 (0%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ LLA+LTG L D+KTI KI + +G+LY +FLP F + + +D+ Y +SG +
Sbjct: 16 IDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAIDVEYIGSESGLMTD 75
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+I + +N + SL +W NF + N VI L+E +LGAS ++I R+LS +E
Sbjct: 76 LIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSIGDPDERNLSHIEL 135
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
LA + +I+ VL ++ ++ ++ + ++ + TI M + I
Sbjct: 136 DLAAMVLGRIAGVLRSGVNAPCGFVATIDPPFNANGKSAFDEMIAGLYGVTIRMKIDIGK 195
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V+S F LI+PQ LLKT++++ + ++ + E+ +D +++ + V ++ RI L+ T
Sbjct: 196 VSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQVTLEARIKLETLT 255
Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D +
Sbjct: 256 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 315
Query: 311 LKNFL 315
L++ +
Sbjct: 316 LRHLM 320
>gi|261837849|gb|ACX97615.1| flagellar motor switch protein [Helicobacter pylori 51]
gi|261839264|gb|ACX99029.1| flagellar motor switch protein FliM [Helicobacter pylori 52]
gi|317181758|dbj|BAJ59542.1| flagellar motor switch protein FliM [Helicobacter pylori F57]
Length = 354
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q +R
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|332673263|gb|AEE70080.1| flagellar motor switch protein FliM [Helicobacter pylori 83]
Length = 354
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRNVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q +R
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|260893849|ref|YP_003239946.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
gi|260865990|gb|ACX53096.1| flagellar motor switch protein FliM [Ammonifex degensii KC4]
Length = 327
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 91/284 (32%), Gaps = 7/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + + L + ++ ++ + F I S + +
Sbjct: 47 SKEQLRTLQLLHENWARILSGFLSGYLRTNISVTVSGVDQLTFDDFIRSLPAPTLLIIFT 106
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L + + + + +++ L G E ++ R + +E + ++ ++ L+
Sbjct: 107 LEPLPGAAVMETNPSFLFPVIDLLFGGPGEMPEKI--REFTEIEVSVGRKLAEKLLENLS 164
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETL 206
+ +P +E + +E V I + ++ L P L
Sbjct: 165 FAWRDVFKVTPAVEGVET--NPRLQQIISPSEVVAVITLTTSVGTESRGLINLCFPHMML 222
Query: 207 LKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
SE ++ V + + + ++++ + L++G V
Sbjct: 223 EPVLSQLSRFYHMRPSEPPDASATRNLRYWLEKVPVEVSVVVGETRLSVQEFLDLEVGDV 282
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ R + + Y + G +G++ ++IT +
Sbjct: 283 LVLDRRFGEDLDVYVGKIKRYRAQPGLLGRHLAVQITGLAEGGE 326
>gi|217033289|ref|ZP_03438720.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
gi|216944230|gb|EEC23655.1| hypothetical protein HP9810_9g42 [Helicobacter pylori 98-10]
gi|317179190|dbj|BAJ56978.1| flagellar motor switch protein FliM [Helicobacter pylori F30]
Length = 354
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q +R
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKERTKEILEM 336
>gi|57241942|ref|ZP_00369882.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
RM3195]
gi|315638332|ref|ZP_07893512.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
JV21]
gi|57017134|gb|EAL53915.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
RM3195]
gi|315481599|gb|EFU72223.1| flagellar motor switch protein FliM [Campylobacter upsaliensis
JV21]
Length = 360
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + L M V+ S + + S F+ S
Sbjct: 50 SKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPTSFNVFS 109
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ N + + ++ +++ LLG ++ +R L+ +E L + I L
Sbjct: 110 IKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYE--ASRELTDIELNLLDSILRIIMQRLK 167
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ ST E P++E + NE + + M + I N + + P L
Sbjct: 168 ESWSTVTEIYPSIEAKESSPNV--VQIVSQNEIIIMVVMEIIIGNSSGMVNICYPVVHLE 225
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + V + + + + + LK G ++
Sbjct: 226 SILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVNEFLELKQGDIL 285
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
A++S + K+++ ++G +I+I + I D+ +K L K
Sbjct: 286 RLDREADDKAVVSIDKKDVFLAQIGLHRFRKSIKIIELIRTDKDEIKEILEK 337
>gi|315586408|gb|ADU40789.1| flagellar motor switch protein FliM [Helicobacter pylori 35A]
Length = 354
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 47/312 (15%), Positives = 103/312 (33%), Gaps = 6/312 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 29 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQVSSIMRSIVEIQLHSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q +R
Sbjct: 89 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--SREF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S +E L + Q+ +L + S E P ++ + NE + +
Sbjct: 147 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV--VQIVAQNEISIMVVLE 204
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ I + + P ++ S N + ++V++
Sbjct: 205 IIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQALLSGVSVDMMVF 264
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + + +LK+++ L +G I + + K+ Y +G G TI+I + +
Sbjct: 265 LGVVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGYRKTIQIKEVVY 324
Query: 306 FDQKSLKNFLHK 317
+++ K L
Sbjct: 325 SEKEHTKEILEM 336
>gi|323341356|ref|ZP_08081600.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
25644]
gi|323091233|gb|EFZ33861.1| flagellar motor switch protein FliM [Lactobacillus ruminis ATCC
25644]
Length = 336
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 38/309 (12%), Positives = 94/309 (30%), Gaps = 15/309 (4%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
RL K + + K + ++ +V + + +
Sbjct: 35 PKVREYDFRRPTRL------SKEYINTLHMIFEDFSKMTGNVLSTQLRTNVSVDLAAIEQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR-- 125
+ +HS + + + + L ++E L G +
Sbjct: 89 ISYDEFMHSIPRVTLLGMFHSEPLKGSQLLEINPQLCSLMVELLCGGLDVRTQHPDEKIP 148
Query: 126 ---SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
S S ++ L + +I V E + + + + NE V
Sbjct: 149 SIESFSDIDLALMRELFKEIVNVYKTSWKDIVELNSKFDTIDT--NPQLSQAMSPNEPVV 206
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQLNV 240
+ + + +++ L IP + + S + +ED R + +
Sbjct: 207 LVTFTVKVFGISTFINLCIPYVFFEGILDKLSIRNWFDSSSDDNEDDSLEIKRGLNNVEM 266
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I+T++ + + D + L+ G VI + + G+ + + G+ I +
Sbjct: 267 VIETKLGDAQMSFADFLNLEAGDVIRLDKKTTSPLETYIEGEPFFYVKPGQKDGQLAIEL 326
Query: 301 TDRINFDQK 309
D++ ++
Sbjct: 327 LDKMEGEED 335
>gi|253702497|ref|YP_003023686.1| flagellar motor switch protein FliM [Geobacter sp. M21]
gi|251777347|gb|ACT19928.1| flagellar motor switch protein FliM [Geobacter sp. M21]
Length = 325
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 4/284 (1%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+ + + ++ ++ VDI KF + +
Sbjct: 44 EAHRAIPNLDIVYDGFIRYNRVTMSNRLGRMVDIKKEEAVPYKFGDFLSVLPNPVCMAIY 103
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ I LV T+++++LG S Q NR +++E +L ++ + A L
Sbjct: 104 KMDPLKGAALIAFDATLVFTIVDSILGGSGVQP-QGMNRLFTSIELRLVEKIVKDALADL 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ + ++ NL + V T++M + IE S +L IP T+
Sbjct: 163 ERAWAPLCPATMNLLRLEM--NPRLVNIVPPEYQVVTMSMKIQIEETVGSMILAIPFLTI 220
Query: 207 LKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
Q + + +++ + +L D++ L G I
Sbjct: 221 EPIRDKLKRGVQMDMMAVDPLWSYRLSEELMGAPMDLSVEMGGATISLSDLLHLTPGDTI 280
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K + G + + G G N ++IT + +
Sbjct: 281 MLEASGKDELTVKVGGTKKFMGIAGVSGGNKAVQITRALTAGGE 324
>gi|32474773|ref|NP_867767.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
gi|32445313|emb|CAD75314.1| flagellar motor switch protein fliM [Rhodopirellula baltica SH 1]
Length = 428
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 6/282 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + SL + + +++ S +S + S F+
Sbjct: 89 KDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVFSLDNPSCFNVIKP 148
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
++ + + L +++ +LG + R L+ +E +L R + +
Sbjct: 149 LPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PGETIRRPLTEIETRLMCRVVELFLEQIVP 207
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
+ P++ + NE + + + L IP ++ K
Sbjct: 208 AWENVIQLEPSIHT--TESNPQLAQIVPPNEVAILVGFEVLLGKNRGMMNLCIPFNSIEK 265
Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
N + A V++ + K D++ L +G +I
Sbjct: 266 YNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDLNVGDII 325
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ LS ++ G +++ +
Sbjct: 326 TTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEPK 367
>gi|85058024|ref|YP_453726.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
'morsitans']
gi|84778544|dbj|BAE73321.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
'morsitans']
Length = 340
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 46/304 (15%), Positives = 83/304 (27%), Gaps = 13/304 (4%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
SP R G K + + M DIS + +
Sbjct: 43 SPFDAAQRRRQGG------ERLKGLEMINQDFAGRFRSALFILMQRRTDISAEAILIQPY 96
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+ + L N + L+ T L+ L G S R+ +
Sbjct: 97 REFAAQLRPPASLNLIDLKPLRGNTLFAFTPGLIFTTLDTLFGGSGRLPDAQE-RAFTPA 155
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E+++ R + + P + + T E V + I
Sbjct: 156 EQRVIDRLLKLMLQAYGDAWLGLHPLEPEFI---TAETSCRFTGFSDGEMVVISPFRVAI 212
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE-DLIDPFARKTYQLNVNIDTRINLK 249
+ F ++ Q L I + Q + AR+ + + R
Sbjct: 213 GAMQGEFAIVFSQAALEPLYEILSKPLPEHIRQDQGHWRQNLARQLQGTELELVARFADL 272
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L V+ L+ G ++P +G ++ G + Y +R+ IN
Sbjct: 273 PLCLSRVMELRRGDILPIPRP--DRLTACVDGVPVFLGNYGSLNGRYALRVEHVINQGID 330
Query: 310 SLKN 313
L N
Sbjct: 331 QLNN 334
>gi|237751752|ref|ZP_04582232.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
gi|229373118|gb|EEO23509.1| flagellar motor switch protein flim [Helicobacter bilis ATCC 43879]
Length = 356
Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 100/292 (34%), Gaps = 6/292 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + S+ + L M V+I S + + S F+ S
Sbjct: 49 SREQLRSFRSIHDKMARNLSNQISAIMRSIVEIQLHSVDQMTYGEFLMSLPTPTSFNVFS 108
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + ++ +++ LLG + R S +E L + QI L
Sbjct: 109 MKPMDGAGVLEINPSIAFPMIDRLLGGRGDQYD--DTREFSNIELNLLDTILRQIMQNLK 166
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + E P+++ + NE V + M + I + + + P +L
Sbjct: 167 ESWAAVAEIFPSIDAKESSPNV--VQIVAQNEVVVMVVMEIVIGHSSGMMNICYPVISLE 224
Query: 208 KTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
S + + +V+I + + + K+++ LK+G VI
Sbjct: 225 TILSRLASRDLMMSETSGKKSRNRELQALIGGADVHIAAMLGGTQLSFKEILELKVGDVI 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
+S +G++ Y ++G TI+I D I ++ +K +
Sbjct: 285 MLDRVADDTVHVSIDGRDKYRAKIGLQRFRKTIQILDEIKTEKDQVKEMIEM 336
>gi|330902572|gb|EGH33587.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 244
Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 80/242 (33%), Gaps = 4/242 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
+ + ++ + D++ Q KF +HS + A +
Sbjct: 1 MPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLAKIKPL 60
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
LV L++N G ++ R + E ++ + + Q L +
Sbjct: 61 RGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLKEAWQ 119
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
E + E +E V ++ ++ + +P +
Sbjct: 120 AIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIEPIRE 177
Query: 212 ISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + Q+ ++Q E ++ +NV + T I ++ L+D++ ++ G VIP
Sbjct: 178 MLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIPVELS 237
Query: 271 EK 272
+
Sbjct: 238 DS 239
>gi|327540553|gb|EGF27130.1| flagellar motor switch protein fliM [Rhodopirellula baltica WH47]
Length = 428
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 6/282 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K + SL + + +++ S +S + S F+
Sbjct: 89 KDQMRAMHSLHESIARNFGASISGLLRTMIEVKLLSVDQLTYSEFVFSLDNPSCFNVIKP 148
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
++ + + L +++ +LG + R L+ +E +L R + +
Sbjct: 149 LPLEGHWVLDIAPGLAYAIIDRMLGGDPV-PGETIRRPLTEIETRLMCRVVELFLEQIVP 207
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
+ P++ + NE + + + L IP ++ K
Sbjct: 208 AWENVIQLEPSIHT--TESNPQLAQIVPPNEVAILVGFEVLLGKNRGMMNLCIPFNSIEK 265
Query: 209 TTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
N + A V++ + K D++ L +G +I
Sbjct: 266 YNAKLSRNGWVGYGKTNPTPQSRRKIADSIDAAPVDVVVTLARSKIRTSDLLDLNVGDII 325
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ LS ++ G +++ +
Sbjct: 326 TTEQAASSALELSVQDVHKFAAVAGAYKGKKAVQVQSTVEPK 367
>gi|313681608|ref|YP_004059346.1| flagellar motor switch protein flim [Sulfuricurvum kujiense DSM
16994]
gi|313154468|gb|ADR33146.1| flagellar motor switch protein FliM [Sulfuricurvum kujiense DSM
16994]
Length = 364
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 48/314 (15%), Positives = 106/314 (33%), Gaps = 6/314 (1%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
++ ++ P I L K + + + + M V+I
Sbjct: 26 ETTEESLYPQRQITLYDFKRPNRVSKEQLRAFRGIHDKMARSIASQISAIMRSIVEIQLH 85
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + + S F+ S+ N + + ++ +L+ +LG E
Sbjct: 86 SVDQMTYGEFLMSLPNPTSFNVFSMKPLEGNGVLEINPSIAFPMLDRILGGKGEPFE--A 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
NR S +E L + + + L + + P +E + NE V
Sbjct: 144 NREFSDIELSLFETILRVMMGTLREAWGPVTDLYPQVESKESSPNV--VQIVAQNEIVVM 201
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVN 241
+ M + I + + + P L S + + +VN
Sbjct: 202 VVMEIIIGHSSGMMNICYPVIALEPVLPKLASRDLMLNETSSKKSRNQELQVLLGGAHVN 261
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
++ + + +L +++ L G +I +S +GK+ + ++G +I+IT
Sbjct: 262 VEVNLGEAELSLHELLELGEGDIIRLNIPADDVVNVSVDGKDRFVGQMGLRRFRKSIQIT 321
Query: 302 DRINFDQKSLKNFL 315
I+ ++ ++K L
Sbjct: 322 SLIDTEKDAVKRAL 335
>gi|332296623|ref|YP_004438546.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
DSM 14796]
gi|332179726|gb|AEE15415.1| flagellar motor switch protein FliM [Thermodesulfobium narugense
DSM 14796]
Length = 323
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 44/289 (15%), Positives = 104/289 (35%), Gaps = 6/289 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
+ + + Y + + + + + +++ + I+S
Sbjct: 39 DFKRPSKFSRDHLRTLELIHETYGRLVATSLSSLVRGSMRLDFSAIDQVPYEEFINSLIP 98
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ S + + + + N+ + L++ LLG S P R+ + +E L + +
Sbjct: 99 PAMIVIISWENTGLSMVLEMNLNITLALVDRLLGGSGLPPPSP--RAPTDIENALIAKLV 156
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ L + T S + +NE V I M++ I +++ L
Sbjct: 157 DRHLVALEEAWRTVYPVSLTFVGTET--NPEFAQIVPANEMVVLITMDIGIGDLSGIMSL 214
Query: 200 IIPQETLLKTTLISLSSQN--KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
IP L + + K + +++ + + + VN+ + L+D++
Sbjct: 215 AIPYSLLEPIVNHLSAQRFFVKKKAENDIEREYVYQHVLNVMVNLQVCLGHMHIPLRDLI 274
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L++G + + + K+ + GRVGKN I+IT+ +
Sbjct: 275 NLRVGDTLLLDTKVDKPLDVKIEKKQKFLGVPGRVGKNLAIKITEVLRE 323
>gi|330880582|gb|EGH14731.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 242
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 84/243 (34%), Gaps = 6/243 (2%)
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
Q KF +HS + A + LV L++N G ++
Sbjct: 2 GGVQVMKFGEYVHSLYVPTSLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKI 60
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E ++ + + Q L + E + E +E
Sbjct: 61 EGREFTPTELRVVRMVLDQAFIDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAGV 118
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVN 241
++ ++ + +P + + + Q+ ++Q E I+ +NV
Sbjct: 119 ISTFHIELDGGGGDLHVTMPYSMIEPIREMLDAGFQSDLDDQDERWINALKEDVLDVNVP 178
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T I ++ L+D++ ++ G VIP ++ ANG + +LG +++
Sbjct: 179 LTTTIAQRQLPLRDILHMRPGDVIPVEL--SESLVMRANGVPSFKVKLGSHKGKMALQVI 236
Query: 302 DRI 304
+ I
Sbjct: 237 EPI 239
>gi|78485773|ref|YP_391698.1| flagellar motor switch protein FliM [Thiomicrospira crunogena
XCL-2]
gi|78364059|gb|ABB42024.1| flagellar motor switch protein FliM [Thiomicrospira crunogena
XCL-2]
Length = 339
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 32/323 (9%), Positives = 103/323 (31%), Gaps = 11/323 (3%)
Query: 1 MRGQSIH---KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
M G + N + + T + + + + + + F E +
Sbjct: 17 MGGGDVDTEGDNPAEGTSAKVYDFTNQERIVRGRLPALDIINERFARGFQRHFNEMIMSS 76
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
V+++ + K + + + ++ + + L+ T ++ G +
Sbjct: 77 VEVTAGEVKIIKMIDYLRNLFVPTSLNIYRINPLNGVSLFTLDSKLIFTAVDMYFGGTGL 136
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
++ R + VE + + + S L + + + ++ + K + +
Sbjct: 137 LPFKIEGREYTPVEMSMVRSILDMSSDNLRKAWAPVMDIE--IDYMHSEMNPKFASIVDA 194
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTY 236
+ + +N+ E V +++P L + +T
Sbjct: 195 TDMIVVSPINVRFEGVEGRVDIVMPYAMLEPVRDKLEEGMSNLQGESDNRWSRTLKEETK 254
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + + ++ D++ ++ G +IP + A G + ++G
Sbjct: 255 NIEIELAVNLLELQMSMDDLMKMEKGDIIPIEMP--ELVTVKAEGIGVLKGKVGESRDRK 312
Query: 297 TIRITDRINF---DQKSLKNFLH 316
++I + ++ ++N
Sbjct: 313 AVKIEQILRHPAYQERMVENVKE 335
>gi|297569682|ref|YP_003691026.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
AHT2]
gi|296925597|gb|ADH86407.1| flagellar motor switch protein FliM [Desulfurivibrio alkaliphilus
AHT2]
Length = 330
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 88/286 (30%), Gaps = 3/286 (1%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
T + +T ++ + + + + +D++ + +F + +
Sbjct: 41 DFTRQQRIVQTRMPAMDAISDAFMRSMRNSLASALRRILDVTAVPMELERFGAFVRTLPV 100
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
++ + + I LV L+E+ LG S ++ R + +E++L +R +
Sbjct: 101 PSSLQIFKMAPFRGHALIVLEPRLVFNLVESFLGGSGSRNVRIEGRDFTAIEQRLIRRVV 160
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ + + + Q + + V + ++ S
Sbjct: 161 NLLLTDMEKAWYSLQPLKVQYVR--SEINPQFAKICQPEDVVIINRYEVDMDRAVGSITT 218
Query: 200 IIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
IP L + + Q + + + V + ++++
Sbjct: 219 CIPMSNLESVRNRLMTTFQREQSEEDIAIQRTITENIKNAEVEFKVELGRTTVPAREIIN 278
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L++G + R + K Y G KN + I ++
Sbjct: 279 LQVGDTLTLDRRTDEQLPVFVASKRKYMATPGVHRKNNAVLIKKKV 324
>gi|114765265|ref|ZP_01444397.1| Flagellar motor switch protein fliM [Pelagibaca bermudensis
HTCC2601]
gi|114542400|gb|EAU45428.1| Flagellar motor switch protein fliM [Roseovarius sp. HTCC2601]
Length = 313
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 37/313 (11%), Positives = 94/313 (30%), Gaps = 4/313 (1%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + +P + + + + + + L + K + ++S
Sbjct: 2 STARTLTPDTRAVEELIVERAKLSYARLPMLEVVFDRFSLSLAQTLKSYLGAMAEVSLGG 61
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + S + W + L+ ++E G +
Sbjct: 62 IDYLSCQDALKDQPDPSLISVTTAEEWGGTIAAIMTPELLFGIIEITFGGRTVATGEKKT 121
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R+ +++EK++ + + L+ + + ++ K
Sbjct: 122 RNFTSIEKRIGQNFTETVLTELSNAFAKVTPVNFDISHLET--NPKALLLAPPTSACVRA 179
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ + IE V ++P K + I NV +
Sbjct: 180 RLTIDIEGRIGEMVFVLPNTAFEKVSHILSQQFTGGQLGGDSGWRLKMTDMLGSTNVPMS 239
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITD 302
+ ++DV+ GQV+ + L GKEI E+G R +++++
Sbjct: 240 AVMGQAVLPMRDVLAWAPGQVLDLGIQVDDPVTLCCAGKEIARAEVGHRKNGRIALKLSE 299
Query: 303 RINFDQKSLKNFL 315
++ ++ S +
Sbjct: 300 KLYEEKDSPDDLR 312
>gi|170748130|ref|YP_001754390.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
JCM 2831]
gi|170654652|gb|ACB23707.1| flagellar motor switch protein FliM [Methylobacterium radiotolerans
JCM 2831]
Length = 309
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 51/303 (16%), Positives = 110/303 (36%), Gaps = 3/303 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ RL G + + F + V S ++ +S +F I+
Sbjct: 9 DIRDRLLDAAGLSLERLPMLHVILDRVATFCADQLRHFAASPVYFSLSNVESQRFGDILE 68
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N + W S+ +G + + T++E LLG+ P RS S +E ++A
Sbjct: 69 PYESNAIAGIFQAPEWDSHILVGFDRDFIFTMVEVLLGSDGSEPPLDEERSFSNIEMRIA 128
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+R Q+ + + ++ LE + N + N
Sbjct: 129 QRLFEQVGRAVQSAFALVADTPFKLER--TELRMDFAVIGRRNNQAVAAKFLLQALNRGG 186
Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
++IPQ L ++ + A + + V + + K L
Sbjct: 187 EMFIVIPQSVLNPMRQSLARILVGETSARDSRWTRQIAGEVQKTPVTLKAILEEKPLALG 246
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ L +GQV+ ++ L N ++++ C++G+ +R+ I+ DQ+ + +
Sbjct: 247 EIADLAVGQVLELRATPRSRVKLVGNDRDLFWCDVGQEDGAIVLRVDHFIDQDQEFIDDV 306
Query: 315 LHK 317
L +
Sbjct: 307 LAR 309
>gi|300680950|sp|P0CG26|FLIM_CAUCR RecName: Full=Flagellar motor switch protein FliM
gi|144253|gb|AAA62449.1| FliM [Caulobacter crescentus CB15]
Length = 373
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 101/303 (33%), Gaps = 4/303 (1%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + + + + + + +V++S + S +F
Sbjct: 72 DRTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDNVEVSLDNISSIRFGDY 131
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEK 132
++S + + + + +NL+ ++++ LLG ++ R +T+E+
Sbjct: 132 LNSIPLPGILAVFRAEELDNYGLLTVDSNLIYSIVDVLLGGRRGTAAMRIEGRPYTTIER 191
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L +R I + L S +L+ + + + +E+
Sbjct: 192 VLVQRMIDVVLHDLKSAFEPLHPVSFSLDRLET--NPPFAAIARPANAAILVKLRIDMED 249
Query: 193 VASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
L++P TL ++ + + A + + + + ++ ++
Sbjct: 250 RGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHLATELWTTQMEVRAVLDEQQV 309
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
L V+ +++G + + + + +GR + +R ++ +K++
Sbjct: 310 PLSRVLNMQVGDTLMLNATSRQPGGAARRRIPLTRGRMGRRNHSIAVRAEAPVDRRKKAV 369
Query: 312 KNF 314
+
Sbjct: 370 QKL 372
>gi|94264049|ref|ZP_01287849.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
switch protein FliM [delta proteobacterium MLMS-1]
gi|93455560|gb|EAT05747.1| Surface presentation of antigens (SPOA) protein:Flagellar motor
switch protein FliM [delta proteobacterium MLMS-1]
Length = 330
Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 42/309 (13%), Positives = 97/309 (31%), Gaps = 7/309 (2%)
Query: 1 MRGQSIHKNTSPLHPILLA----RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL 56
+ G I + + L T + + ++ + + + +
Sbjct: 18 ISGGDIDEPEEAVDAESLGYTPYDFTRQQRIVQVKMPAMDAISDTFMRSVRTSLSAALRR 77
Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
+DI+ + +F + + ++ + + I LV TL+E+ LG S
Sbjct: 78 ILDITAAPMEMERFGAFVRTLPVPSSLQVFKMAPFRGHALIVLEPKLVFTLVESFLGGSG 137
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
++ R + +E++L +R + + L + + Q +
Sbjct: 138 ARNVRVEGRDFTAIEQRLIRRVVNLLLTDLEKAWYSLQPLKVQYVR--SEINPQFAKICQ 195
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKT 235
+ V ++ ++ A S IP L + + Q + + +
Sbjct: 196 PEDVVVINRYDVDMDRAAGSITTCIPLANLESVKSKLMTTFQREQSEEDIAIQRTIVDNI 255
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
V+I + K D++ L +G I R + + G Y G N
Sbjct: 256 KNAEVDIKVELGKTKVPAADIINLAVGDTIQLERRPEEQLPVYVAGMRKYMATPGVHRNN 315
Query: 296 YTIRITDRI 304
+ I ++
Sbjct: 316 NAVLIKRKV 324
>gi|162147486|ref|YP_001601947.1| flagellar motor switch protein FliM [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545593|ref|YP_002277822.1| flagellar motor switch protein FliM [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786063|emb|CAP55645.1| putative flagellar motor switch protein fliM [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533270|gb|ACI53207.1| flagellar motor switch protein FliM [Gluconacetobacter
diazotrophicus PAl 5]
Length = 395
Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 40/291 (13%), Positives = 101/291 (34%), Gaps = 6/291 (2%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L R+ + + + L + + +V+I+ +S F +++
Sbjct: 81 LERVIKAGFVAYERLPMLEIVFDRLVRMLSSTLRSFTNDNVEITIDGMRSMSFGDYMNAV 140
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAK 136
+ +F+ W + I + L ++++ L+G + R + +E+ L +
Sbjct: 141 PSSSLFAVFKAVQWENYGLIVIDSALSYSIIDILMGGPRGVGYAGVEARPHTAIERALIE 200
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ + L+ + E + ++ V +++ +E+ + S
Sbjct: 201 KLVTLTLNDLSTAFNPVCTIDLTFERLEV--SARFAAIARASNAVVMTKLHIDMEDRSGS 258
Query: 197 FVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
LIIP TL + + + + ++ + K L +
Sbjct: 259 LDLIIPYVTLEPVRDQLSQQFMGERFGRDSKWEGHLVSEILETDIQVSAVFEEKTILLSE 318
Query: 256 VVTLKIGQVIPFLHREKTCAILS--ANGKEIYSCELGRVGKNYTIRITDRI 304
V+ L+ G +I F H+ T + ++ LG++ ++I R+
Sbjct: 319 VLGLRPGMLISFPHQNGTPIHVRLQCGQTPLFEGRLGKLQDKAAVKIEKRL 369
>gi|254292908|ref|YP_003058931.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814]
gi|254041439|gb|ACT58234.1| flagellar motor switch protein FliM [Hirschia baltica ATCC 49814]
Length = 376
Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 101/286 (35%), Gaps = 4/286 (1%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
+ + + + + L + +V++S S S +F ++S
Sbjct: 77 IRSIINSAHVSYERLPMLEVVFDRLVRLLTTSLRNFTSDNVEVSLDSIASMRFGDYLNSI 136
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAK 136
+ S + + +NL+ ++++ LLG ++ R +T+E+ L
Sbjct: 137 PLPAILSVFRARQLDNYGLVTVDSNLIYSIVDVLLGGRRGTAAMRVEGRPYTTIERMLVT 196
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
R + I A + + E +L+ + + + + +E+
Sbjct: 197 RLVEVILADAKKAFNPLTEVDFDLDRIET--NPRFAAIAQPANAAILVRLRVDMEDRGGR 254
Query: 197 FVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
L++P TL ++ + + A + + N+ ++ + L
Sbjct: 255 CELMLPYATLEPIRKMLLQNFMGEKFGNDNIWEGHLATEIWTAPTNVRVVMDEFEQPLGR 314
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+++L++G + + + L + ++GR+GK +R+
Sbjct: 315 MMSLEVGDTLLMTAGQNSKVSLRCGDIYLTEGQIGRIGKKVAVRVD 360
>gi|90422602|ref|YP_530972.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisB18]
gi|90104616|gb|ABD86653.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisB18]
Length = 311
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 3/300 (1%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
+L G G + + + + S + S + S I+ ++
Sbjct: 14 DQLLGAAGISVERMPMLHVIFDQMTNLCAEALRSMSPSQSYFSLSGVGSDRLSDIVDRYE 73
Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
+ + +W + IG + + T++E L GA P R S VE +A+
Sbjct: 74 GEAIAAVFYAQAWDARVLIGFDRDFIYTMIELLFGADGAEPPLDMPRVFSNVEMHVAQAL 133
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ L S + + LE + N N+ + +
Sbjct: 134 FERFGKALQSSFSRASDVNFTLERVET--RMDYLAVGRLNNMAVCANILLQGLDRGGEMF 191
Query: 199 LIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
++IP L +S + + + + V + + + TL +V
Sbjct: 192 IVIPHAALNPIRQALSQIVTGESASTDPNWSRQLHSEIKRTEVVLKAVLEERPFTLGEVA 251
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
+GQVI T L N + ++ C+LG++ Y++++ + + ++ + L +
Sbjct: 252 GFHVGQVIKLNATPNTMVRLECNNQRLFWCQLGQLNGVYSLQVKESADQKREFIDGILSR 311
>gi|182679717|ref|YP_001833863.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635600|gb|ACB96374.1| flagellar motor switch protein FliM [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 313
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 59/297 (19%), Positives = 108/297 (36%), Gaps = 3/297 (1%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
RL G + + + ++ + +S + + I+ +++
Sbjct: 16 ERLLDTAGVSIDRMPMLHVIFDRMVAQCSESLRQYSAAPAVFTVSSIGTERIGDILDAYE 75
Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
N V + + +W S +G + TL+E G P + R LS +E KLA+
Sbjct: 76 NNTVVAIIHVQAWDSRILVGFDRAFISTLIETFYGGDGSEPPNIEKRPLSNIEIKLAQTI 135
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ L ST E+ E L N F +N+ I
Sbjct: 136 FDLLPKALQTSFSTISETVFKFERLETK--LDFAVIAPRNTFGFITRINLRILGRHGEMF 193
Query: 199 LIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
++IPQ +L N + + + + V + I L D
Sbjct: 194 VVIPQSSLNSIRQELGRDLANDAVVRDPRWTKQIQNEISRTEVEVRAIIEDSHFVLGDFT 253
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
LKIGQV+P K+ A L N + ++ C++G+ YT+R+ D I+ ++ ++
Sbjct: 254 ELKIGQVLPLQATTKSRAKLECNAEPLFWCQVGQEDGFYTLRVEDFIDQEKDFIEGI 310
>gi|327398387|ref|YP_004339256.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
gi|327181016|gb|AEA33197.1| flagellar motor switch protein FliM [Hippea maritima DSM 10411]
Length = 327
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 6/280 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + +L + + + V+I S ++ + S N F+ S
Sbjct: 52 SKEQIRAIKNLHDKFSRNFSSKLSAFLRSIVEIEVVSVDQMTYAEFVLSLSNNVSFNVVS 111
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
LS N ++ L++ LLG E+ NR + +E+ + + Q +
Sbjct: 112 LSPLDGNAVFSLEPDIGFALIDRLLGGIGESSN--INRPFTDIEQSILLDVVRQAMEEMR 169
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ S + + +E V + + + +P L
Sbjct: 170 SSWEPIIDISFEVVGQESSPNV--VQIVAPSEIVVLVVFEVKLGETTGIINWCLPVIVLE 227
Query: 208 KTTLISLS--SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ +S+ +ED I+ AR ++ V ++ R+ ++D ++LK G ++
Sbjct: 228 PVLNKIGTHDILARSKKATEDRIEDIARTLKEVLVYLEFRLGTAAMKVEDFLSLKEGDLL 287
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + NG E Y +LGR G N ++I I
Sbjct: 288 TLDKKVDDELPVFINGVEKYGVKLGRKGYNKAVKINRIIG 327
>gi|295696124|ref|YP_003589362.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
gi|295411726|gb|ADG06218.1| flagellar motor switch protein FliM [Bacillus tusciae DSM 2912]
Length = 332
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 45/314 (14%), Positives = 96/314 (30%), Gaps = 16/314 (5%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M+ + + R K + + + Y + L F ++ + +
Sbjct: 27 MKEEEEQRRIRAYDFKRAMRF------SKDQLRSLTRIYENYARMLSTYFSAQLRTWMHL 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + I S + L+ S + IG ++ +L+ LLG +
Sbjct: 81 DVISVEQLPYEEFIRSMPQLSTLLVVDLAPLSGRWVIGIGPDVAFVMLDRLLGGPGLELA 140
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE-SSPNLEDFYDIDYLKKNTNRLSNE 179
R+ + +E + +R+ ++ VL E P L + N+
Sbjct: 141 --GARAFTEIETTVFERSWSRSLGVLGDAWKGIVEDLRPTLSFIEF--NPQFLQIAAPND 196
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ-----NKSENQSEDLIDPFARK 234
V ++++M I + +P TL + S + +
Sbjct: 197 TVAVVSVSMRIMETTGLMHIGMPHLTLERLLPKLSSQHMLGMGQAGRALDPAREEALRER 256
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
V I + D++ L G VIP + + Y G
Sbjct: 257 LRAAPVEIRAVLGRTSIDFYDLMHLAAGDVIPLHQSVNRPVEIYVGDRVKYLGRPGVDHG 316
Query: 295 NYTIRITDRINFDQ 308
++IT+ + ++
Sbjct: 317 RLAVQITEIADDER 330
>gi|147678396|ref|YP_001212611.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
gi|146274493|dbj|BAF60242.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
Length = 330
Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 37/285 (12%), Positives = 86/285 (30%), Gaps = 8/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L ++ + L + +V I S + I S V + S
Sbjct: 47 SKDQLRTLQVLHGVFARLLSNFLTGYLRSNVQIEVASVDQLTYEDFIRSIPTPTVLAIFS 106
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L+ + + +++ G + E + R L+ +E + ++ +I L
Sbjct: 107 LNPLKGTAIAQLDSMFLFPIIDLFFGGNGEAPKAV--RELTDIELSVVRKISMKILEHLA 164
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206
P +E + +E V I + + A L +P L
Sbjct: 165 LAWKDIVHVEPVIETVET--NPYLHQIFSFSEIVALITLTTQVGESARGFINLCLPFPLL 222
Query: 207 LKTTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+ ++ +++ + + + + T+ D + L+ G
Sbjct: 223 DPVVSQLSFQRRFGPQTSAVNDEEVKRLQYWLGFPKIELTVLAGQTQITVDDFLQLQEGD 282
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
V+ + L + + G +G ++IT +
Sbjct: 283 VLILDKKVDQDLDLYIGEHLKFKVQAGALGSKLAVQITALATEGE 327
>gi|325291948|ref|YP_004277812.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
gi|45479283|gb|AAS66685.1| FliM [Agrobacterium sp. H13-3]
gi|325059801|gb|ADY63492.1| Flagellar motor switch protein [Agrobacterium sp. H13-3]
Length = 319
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 93/305 (30%), Positives = 165/305 (54%), Gaps = 2/305 (0%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ LLA+LTG L D+KTI K+ S +G+LY +FLP IF + + +D+ Y +SG +
Sbjct: 14 IDTSLLAKLTGGLSDRKTIAKVGSDIGHLYSEFLPDIFHSETGIAIDVEYIGSESGLMTD 73
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+I + NF + SL +W NF + N VI L+E +LGA+ +TI + RSLS +E
Sbjct: 74 LIANIGGNFSVADCSLRNWCPNFMMAVGNGFVIALMERMLGAAADTIGEPDERSLSHIEL 133
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
LA + +I VL ++ ++ + + ++ + T+ M + I
Sbjct: 134 DLAAMVLGRIGGVLRSGVNAPGGFEATIDLPFTANGKSAFEEMIAGLYGVTVRMKIAIGK 193
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V+S F LI+PQ LLKT++ + + ++ + + +D + + + V ++ RI L+ T
Sbjct: 194 VSSEFALIVPQRPLLKTSIAAPKASAQALKKQAEWVDLISEQVKRSQVTLEARIKLETLT 253
Query: 253 LKDVVTLKIGQVIPFL--HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L+ + L G VIPF ++ +SANG ++Y+CE G+ G Y +R+ + ++ D +
Sbjct: 254 LRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYMVRVKNNVSTDDEI 313
Query: 311 LKNFL 315
L++ +
Sbjct: 314 LRHLM 318
>gi|254473349|ref|ZP_05086746.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
gi|211957465|gb|EEA92668.1| flagellar motor switch protein FliM [Pseudovibrio sp. JE062]
Length = 321
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 54/302 (17%), Positives = 115/302 (38%), Gaps = 3/302 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
L +RL G + + + ++ ++ S + + +
Sbjct: 21 DLPSRLLDAAGLGVDRLPMLHVVFDRMARQYIDTLRQMAATAPYLAVQSVSNERIGDALE 80
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+++ V + W + +G + +++E LLG E P L +RSL+ VE++LA
Sbjct: 81 QYEDRAVVAVLHAQEWDARILLGFDRTFIFSMVEVLLGGDGEEEPFLEDRSLTNVEQRLA 140
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
R + + L ++S +E + ++ + M I
Sbjct: 141 YRMFEEAATALETAFEAIADTSLKVERLE--NRMEFAQTGRKSNPCVLAKMTAEIIGREG 198
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
+IIPQ L + + F ++ + V + + ++ TL+
Sbjct: 199 EIFIIIPQSVLNPLRENLTQVLSGEVAGRDTRWTKQFQQEVQRTEVKLTAILEEQRMTLE 258
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+V ++G V+ KT L N + +++C LG+V +YT+R+ + I + + L +
Sbjct: 259 EVAQFEVGLVLELNATPKTAVQLECNSQPLFNCRLGQVAGSYTVRVEELIEQEGELLDDI 318
Query: 315 LH 316
L
Sbjct: 319 LS 320
>gi|258514031|ref|YP_003190253.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
DSM 771]
gi|257777736|gb|ACV61630.1| flagellar motor switch protein FliM [Desulfotomaculum acetoxidans
DSM 771]
Length = 334
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 39/273 (14%), Positives = 88/273 (32%), Gaps = 7/273 (2%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
+ L Y + L + + + S F + S + + SL +
Sbjct: 56 RTLQMLHEGYGRLLSSYLTGYLRASIVVRVISVDQFTFDDFVGSVPSPTLLTVFSLPPLT 115
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
+ + + +++ L G + + ++ R L+ +E + K+ I ++ L
Sbjct: 116 GPAVLETNPQFLFPIIDLLFGGTGKMSDRV--RELTDIELSVIKKLIPKLLEQLVLAWQD 173
Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTL 211
E + L+ + E + + + I + L +P L
Sbjct: 174 LYEVTAELQSIET--NPRLMQVMNPGEIIALLTFSTVIGGTSRGLINLCLPYLMLEPVLS 231
Query: 212 ISL--SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + ED + Q + + K +++D + L+ G V+
Sbjct: 232 KLSIHYRNTRKDMAKEDDLRRLEYWMGQAELTLTAVAGETKISVRDFLQLQEGDVLTLDR 291
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
R L K Y + G +G+ ++IT
Sbjct: 292 RIDEDVDLFLEEKLKYKVQPGTMGRFMAVQITS 324
>gi|291278835|ref|YP_003495670.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
SSM1]
gi|290753537|dbj|BAI79914.1| flagellar motor switch protein FliM [Deferribacter desulfuricans
SSM1]
Length = 333
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 45/301 (14%), Positives = 100/301 (33%), Gaps = 12/301 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K S R+ K + +L + + + DI+ S
Sbjct: 35 KKVSVYDFRRPDRV------SKEQLRSLRNLHDKFARNFSSALSNVLRAITDINLVSVDQ 88
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S + F+ S+ N + + ++V +++ LLG + + + ++ R L
Sbjct: 89 MTYGEFLMSLPDPTSFNVISMIPLEGNLVLEINPSIVFPIVDKLLGGTGQPLYKI--REL 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E+KL I + L + + + + NE V I
Sbjct: 147 TDLEQKLLDGVINLLLKELEDVWRQVIP-NVKFKKEVSENSPQVIQIVAQNEVVVLIVFE 205
Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ + L P TL + + + + + V+++
Sbjct: 206 VKFGEASGLINLCFPAITLEPVLGKISSQDWIIGGKKGKFGNYEEQIFLLLEDIFVDVEA 265
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ T+ ++++LK G I + A+L N + + ELG G +++ I
Sbjct: 266 VLGENIFTVDEILSLKAGDTILLNKKSTHPAVLILNNLKKFEVELGISGVKKAVKVKRII 325
Query: 305 N 305
Sbjct: 326 E 326
>gi|158422267|ref|YP_001523559.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
gi|158329156|dbj|BAF86641.1| flagellar motor switch protein [Azorhizobium caulinodans ORS 571]
Length = 309
Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 112/310 (36%), Gaps = 3/310 (0%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
N + H + L G + + + ++ S +S ++G
Sbjct: 2 NAAHSHQDIRDMLLDAAGLSIDRMPMLHVIFDRLGTLCAEGLRQLAASQAFYSLSSIETG 61
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
+ ++ ++ V + W S+ +G + V T++E L GA P RS S
Sbjct: 62 RIGDVLEMYEGMAVAGVFHVPMWDSHIIVGFDRDFVFTMIEALFGADGSEPPVDDERSFS 121
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+E ++++ Q+ L+ + ++ E + N T +
Sbjct: 122 NIELRISQAIFEQMQKALHNAFTMVSDTQFKFERQET--RMDFAVIGRRNNLAVTAKFLL 179
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
N +IIPQ L + ++ + + + V + +
Sbjct: 180 QALNRGGEMFVIIPQSALTPMRQALARTTPAETSGRDPIWTKQIRDEVNRTQVKVRAILE 239
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L ++ K+GQV+ +T L + + ++ C LG+ Y +R+ ++IN +
Sbjct: 240 ERHYPLGEIADFKVGQVLHLQATPRTLVKLESADQPLFWCHLGQAEGAYVLRVEEQINLN 299
Query: 308 QKSLKNFLHK 317
Q+ + + L +
Sbjct: 300 QEFVDDILPR 309
>gi|163789668|ref|ZP_02184106.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
gi|159875200|gb|EDP69266.1| flagellar motor switch protein fliM [Carnobacterium sp. AT7]
Length = 333
Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 42/311 (13%), Positives = 98/311 (31%), Gaps = 12/311 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
+ ARL K + + + K + I ++ +VD+
Sbjct: 30 QEQEKNKVKSYDFRRPARL------SKEYITTLNMIFEEFAKIIGNILSTQIRTNVDVKL 83
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS--HETIP 120
S + F +HS + + I + L + L++ L G+S +
Sbjct: 84 ASIEQVSFDEFVHSVPRFTLMGLFRSAPLEGTQIIELNPQLCLQLVDLLCGSSEIRKNDE 143
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ S + +E + + + S + ++ + NE
Sbjct: 144 VMSKNSFTDIEMAILEEILTNFSQSFELAWRDVVDLKVKID--STETNPQILQTMSPNEP 201
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTYQL 238
V + + + + V + + +P + + + + +
Sbjct: 202 VVLVTLTVELHGVKTFINVCVPYIFFEGILEKLSLRNWFHSEKETDHTDSGKLEKSLHSA 261
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
VN++ + TL++ + L++G +IP + +LS Y + G GKN +
Sbjct: 262 PVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLVLSVEELPRYFVKPGLKGKNMAV 321
Query: 299 RITDRINFDQK 309
+ I +
Sbjct: 322 EVLQYIGGETD 332
>gi|268316335|ref|YP_003290054.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
gi|262333869|gb|ACY47666.1| flagellar motor switch protein FliM [Rhodothermus marinus DSM 4252]
Length = 348
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 7/280 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ ++ + + + L ++ VDIS ++ +S + S
Sbjct: 55 SQDQMRVLHYVHEAFARDLSVYLSAQLRTLVDISLSAIDQVLYSEFVMSSAPPSALYVVD 114
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + L I ++E L G + + R LS +E+++ + + + L
Sbjct: 115 VHPLHQKIVLELDPRLAIFMVEKLFGGPGIFLRKP--RELSQIERRIMDKVMMRAFRELE 172
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + +LE+ + E ++I S + P L
Sbjct: 173 KAWKQIHDI--HLEEAGFESNAEFVQILPGVEPALVATFEVSIYEQRSFINICYPYILLE 230
Query: 208 KTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + + + + + ++ V + + + L +++TL++G V
Sbjct: 231 RMLGHSAMKQWRSSSTTEVPPAVRQRYEEQLEKIEVELRAVMGRTRIKLSEMMTLEVGDV 290
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
I R + +E + GR GK+ +RI + +
Sbjct: 291 IVLERRVNQPVQVYIGEREKFRAIPGRSGKHRALRILEVV 330
>gi|85060031|ref|YP_455733.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
'morsitans']
gi|84780551|dbj|BAE75328.1| flagellar motor switch protein FliM [Sodalis glossinidius str.
'morsitans']
Length = 317
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 29/285 (10%), Positives = 79/285 (27%), Gaps = 13/285 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S P P + R+ + + + + + + DI+ +
Sbjct: 28 SAEPEIKPYDPYIQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 81
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q + + + L S LV +NL G ++
Sbjct: 82 IQIQPYHEFARNLPVPTNLNLIHLKPLRGTALFVFSPILVFIAADNLFGGDGRFPIRMEG 141
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ +R + + + + + N N+ + T
Sbjct: 142 REFTHTEQRIIRRMLRLALEGYQEAWQAIYQLTIEYVHAE-MQVKLTNITSSPNDIMVTT 200
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
++ I ++ F + IP + + + + + + R+ + +
Sbjct: 201 PFHVEIGSLIGEFYICIPFSMIEPLRELLANPPLE----DQSWRENLVRQIQHSELELVA 256
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
L +++ L V+ +G + + +
Sbjct: 257 NFTDVSLQLSEILKLAPADVLNIEKP--EHITAYVDGVPVLTGHV 299
>gi|328958299|ref|YP_004375685.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
gi|328674623|gb|AEB30669.1| flagellar motor switch protein FliM [Carnobacterium sp. 17-4]
Length = 331
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 45/313 (14%), Positives = 94/313 (30%), Gaps = 12/313 (3%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + RL K + + + K I ++ +V +
Sbjct: 27 LDEKEQENKVKSYDFRRPVRL------SKEYISTLNMVFEEFAKISGNILSTQVRTNVGV 80
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS--HET 118
S + F +HS + I S L + L++ L G++
Sbjct: 81 QLASIEQVSFDEFVHSVPRFTLMGLFHSVPLDGTQIIEISPQLCLQLVDLLCGSTEIRSN 140
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
I +L S + +E + + + E L+ + N
Sbjct: 141 IDELSKESFTDIEMAILEEILNNFINAFELAWRDVVEVKGKLD--STETNPQMMQTMSPN 198
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL--SSQNKSENQSEDLIDPFARKTY 236
E V + + + V + L +P + + + + +
Sbjct: 199 EPVVLVTFTVELYGVKTFINLCVPYIFFEGILEKLSLRNWFHSEKETDHTDSGKIEKSLH 258
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
VN++ + TL++ + L++G +IP + ILS Y + G GKN
Sbjct: 259 SAPVNMEVLLGETVMTLENFLQLELGDIIPLDGKTSDPLILSVEKLPRYFVKPGLQGKNM 318
Query: 297 TIRITDRINFDQK 309
+ + I +
Sbjct: 319 AVEVLQYIGGETD 331
>gi|315121854|ref|YP_004062343.1| flagellar motor switch protein fliM [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495256|gb|ADR51855.1| flagellar motor switch protein fliM [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 318
Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats.
Identities = 208/318 (65%), Positives = 254/318 (79%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
MR + K+ SPLHP+LLARLTGKLGDKKTIE+IS +LG LY K LPK FKE++D+D+++
Sbjct: 1 MREKRTSKDISPLHPVLLARLTGKLGDKKTIERISYNLGQLYTKLLPKSFKEELDVDLNV 60
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
SY + QSGKFSHI+HSFKE FVF + SL+ SSN FIGCSNNLVI LLE LL AS ET
Sbjct: 61 SYGNYQSGKFSHILHSFKERFVFYKTSLNGRSSNLFIGCSNNLVIVLLETLLRASCETTQ 120
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ +NRSLST+EKKLA + +I+ VL+QCIST Q + L++ Y++D+LK+NTN LSNEF
Sbjct: 121 KSHNRSLSTIEKKLAHLIVTKIATVLDQCISTAQNNRVTLDENYELDFLKQNTNLLSNEF 180
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
VT I M +TI+N+AS F LIIPQETLLK TLISLS Q KS ED D TY+++V
Sbjct: 181 VTAITMVVTIDNIASLFTLIIPQETLLKITLISLSEQGKSAIPLEDCPDQLNGNTYKIHV 240
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I++RINL+K TLKDV+ LKIGQV+PFL +EK AIL+ANGKEIYSCELGR+GKNYT+RI
Sbjct: 241 KIESRINLQKITLKDVLNLKIGQVMPFLDKEKVYAILNANGKEIYSCELGRIGKNYTVRI 300
Query: 301 TDRINFDQKSLKNFLHKR 318
DRINFDQ+SL+NFLHK
Sbjct: 301 QDRINFDQESLRNFLHKE 318
>gi|118581837|ref|YP_903087.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
2379]
gi|118504547|gb|ABL01030.1| flagellar motor switch protein FliM [Pelobacter propionicus DSM
2379]
Length = 325
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 3/265 (1%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ + ++ ++ V+I +S KF I + + + I
Sbjct: 56 IYDSFIRYNRVSLSNRLRKVVEIKKIGARSYKFDDFIQTLPSPVCMAIFKIEPLKGAALI 115
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
+ LV++L+++LLG + + + NR +++E +L ++ +A I L + + +
Sbjct: 116 SFDSTLVLSLVDSLLGGTGTSKVSMANRMFTSIELRLVEKIVADILQDLEKAWAPLYATH 175
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
NL + + T+++ + IE+++ + V +P T+ +
Sbjct: 176 MNL--LRMEMNPRLINIVPPEYQIVTMSLKIQIEDISGNMVFAVPYMTIEPIRDKLKAGM 233
Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + I + TL +++ L G I + +
Sbjct: 234 QFDLMAIDPQWSSRLSSGLMEAPLEIVVEMGNANITLGELLDLAAGDTIMLDKPCSSELL 293
Query: 277 LSANGKEIYSCELGRVGKNYTIRIT 301
+ G Y G N I+IT
Sbjct: 294 VKVEGTTKYFAIPGIRHGNRAIQIT 318
>gi|27381992|ref|NP_773521.1| hypothetical protein bll6881 [Bradyrhizobium japonicum USDA 110]
gi|27355162|dbj|BAC52146.1| bll6881 [Bradyrhizobium japonicum USDA 110]
Length = 313
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 49/298 (16%), Positives = 104/298 (34%), Gaps = 3/298 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
L G + + + + S + + II ++ N
Sbjct: 18 LLDAAGISIERMPMLNVIFDRMAASCTDSLQPMAGTPCYFSVNGITNDRVGDIIKDYEAN 77
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
V + W S I + V T++E + G+ P RS S +E +L +
Sbjct: 78 AVAAVLYAEQWDSRIIIMLDRDFVFTMVEAMFGSDGAEPPLDVERSFSNIEIRLVQALFE 137
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
+ + L + T + +E + S N+ + LI
Sbjct: 138 RFAKALQSAFAGTSNVTFRVERVETA--MASLAIGRSGNMSICANIMLQALYRGGQMFLI 195
Query: 201 IPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
IP L + + + ++ V + ++ K TL DVV
Sbjct: 196 IPHSALNPLRQKLAHVVVSDGRASDPRWREQMESEVHRTEVTLSAVLDEKMVTLGDVVKF 255
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
++GQV+ +T A L +N + ++ C++G++ Y +++ D ++ ++ + + L +
Sbjct: 256 QVGQVLELEATPRTLARLESNNQVLFWCQIGQLDGYYAMQVADPVDQKREFVDDILSR 313
>gi|258592491|emb|CBE68800.1| putative Flagellar motor switch protein fliM [NC10 bacterium 'Dutch
sediment']
Length = 333
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 38/284 (13%), Positives = 86/284 (30%), Gaps = 7/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + L + K + + V+I T + ++ I S
Sbjct: 47 SKEQLQALQMLHDRFAKQMGGTLSPLLRTFVEIRPTLVEQMAYAEYIASVAYPACLGIFG 106
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + L+ +++ +LG + R L+ +E+ L + + + L
Sbjct: 107 MKPLKGGAIVELPPRLISYIIDRILGGAGRISDV--ARELTEIERALVSKLLRRTLEDLR 164
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S L + + V I ++ I +V L P L
Sbjct: 165 NAWSRVSLFQFELLNLEV--NPGFLQLAAPTDMVILIGFDVKIGDVEGMMSLCFPFSMLE 222
Query: 208 KTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
E E A+ + +++ + T+ ++ LK G +
Sbjct: 223 PVIPNLSLRRWIAGHREETDEVGAAEIAKAMPAVGLSVRALLGSIPLTVHELSFLKAGDI 282
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + +L G Y ++G + ++I I+ ++
Sbjct: 283 VRLDIGASSLGVLEVEGVPKYVVKVGTSHRKRAVQIVADISEEK 326
>gi|54294679|ref|YP_127094.1| flagellar motor switch protein FliM [Legionella pneumophila str.
Lens]
gi|53754511|emb|CAH15995.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
Lens]
Length = 353
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 35/286 (12%), Positives = 78/286 (27%), Gaps = 5/286 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
TG+ K + + + D +I K + S
Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 130
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ I + V L++ G + + Q + E ++ +
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
++ L + + F D + E + + +F I
Sbjct: 191 KLVTNLTHAWEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFLLNFGKETGAFYFI 248
Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+P L L + + + I+ + + + + + +TL V+
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 308
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
K+G +P L G ++ LG + ++I I
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKIIKIIR 352
>gi|83815559|ref|YP_446689.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
gi|294508625|ref|YP_003572684.1| flagellar motor switch protein FliM [Salinibacter ruber M8]
gi|83756953|gb|ABC45066.1| flagellar motor switch protein FliM [Salinibacter ruber DSM 13855]
gi|294344954|emb|CBH25732.1| Flagellar motor switch protein FliM [Salinibacter ruber M8]
Length = 372
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 43/290 (14%), Positives = 103/290 (35%), Gaps = 7/290 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+T ++I + + + + L ++ VDIS T+ +S + S
Sbjct: 55 SQTQKRILNQVHESFARDLSVYLSAQLRTIVDISLTAVDQVLYSEFVMSSAPPSALYVLR 114
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
LV+ +E L+G + + + +R +S +E+++ R + + L
Sbjct: 115 EDELEYRSIFEIDPRLVVYTIEKLMGGDGQLMDE--SREVSPIEQRIMSRVMKRAYRKLE 172
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E ++E+ + + E + ++ + + S + P L
Sbjct: 173 ESWRKAYEL--SVEEVAFESNAEFVQIIPAAEPALVASFDVRVYDEPSFINICYPYLMLE 230
Query: 208 KTTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + ++ D + + VN+ + + ++ L+ G V
Sbjct: 231 QMLGRSGMEQWISSSTTAVEPEVRDRYEETLRETEVNLSAELGRTVLPVTELAQLQEGDV 290
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
IP + NG++ + GR G+ +RIT + + +
Sbjct: 291 IPLDRETDDPIKVFVNGEQKFEAVPGRSGRQRALRITAAESPENVEFDSL 340
>gi|254497501|ref|ZP_05110294.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12]
gi|254353316|gb|EET12058.1| flagellar motor switch protein FliM [Legionella drancourtii LLAP12]
Length = 358
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 11/300 (3%)
Query: 7 HKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQ 66
L+ R+ + + + + D +I+
Sbjct: 68 DSEVKTLNFSSQERIVKGK------LPVLDRIYDRAVRSFATDIYQLTAKDFEITQDQML 121
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
K + S + S I + V L++ G S + + Q
Sbjct: 122 IIKHRDFMESLPNPSLMSIYKFKPLRGKGIIMFDSTFVYDLVDYYFGGSTQFLAQKDRTD 181
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
+ E ++ + ++ A L + + F D + +E + +
Sbjct: 182 FTATELRVMEAVTTKLIANLTLAWKPIIQLD--ISKFNDETNPQLVNIAEPDEMLLVVRF 239
Query: 187 NMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
++ F I+P + L + + + + + + + I +
Sbjct: 240 SLDFGKETGDFYFILPYTMVEPIKEQLELGASRPDDEIDPNWVKSLKEELMDVELVISSA 299
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ K+TL V++ + G IP + L G Y+ LG + ++I I+
Sbjct: 300 MAQTKSTLGTVMSWQAGDFIPMEMK--EIVTLDVEGTPGYTATLGTANEKRALKIIKNIS 357
>gi|54297705|ref|YP_124074.1| flagellar motor switch protein FliM [Legionella pneumophila str.
Paris]
gi|53751490|emb|CAH12908.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
Paris]
Length = 353
Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 37/286 (12%), Positives = 81/286 (28%), Gaps = 5/286 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
TG+ K + + + D +I K + S
Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNP 130
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ I + V L++ G + + Q + E ++ +
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
++ A L + + F D + E + + SF I
Sbjct: 191 KLVANLIHAWEPIIQLD--ITKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGSFYFI 248
Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+P L L + + + I+ + + +++ + +TL V++
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSW 308
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
K+G +P L G ++ LG + ++I I
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSTNEKRALKIIKIIR 352
>gi|225849132|ref|YP_002729296.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644014|gb|ACN99064.1| flagellar motor switch protein FliM [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 322
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 10/302 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K P + ++ + + K + + + +S S
Sbjct: 26 KREKPFDFSKVEKIKKGGF------PGLEVIFERWAKIFREEIRSLFPVINMVSKNSITV 79
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
KF I+ ++ ++ + + + + +V L+ L G ++ R
Sbjct: 80 MKFGDFINKIPLPASYTIFTMKPLNESALLVIDSRVVFNLISALFGG-GARPFKIEGRDF 138
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E + + + + T +E E V + M
Sbjct: 139 TKLELNIIHDFVDTVLTSFEKIWQTVYPVE--VERKSVELNPFLVRIVSPAEKVIVVEMI 196
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ IE + F PQ L I S + S D + +K ++ +N ++
Sbjct: 197 LDIEGLEVPFSFAFPQMMFLPLKDIIFS-ETSSLEIPADWKENILKKLSKVELNFTLELS 255
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+++++ L++G I ++ L GK ++ +LGR K Y I DR+ +
Sbjct: 256 RFTMLVEELLNLEVGSDIILNVKKDDSINLMVEGKPKFTAKLGRYDKKYAAMIVDRVKGE 315
Query: 308 QK 309
+
Sbjct: 316 ED 317
>gi|84502561|ref|ZP_01000697.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
gi|84389373|gb|EAQ02170.1| Flagellar motor switch protein FliM [Oceanicola batsensis HTCC2597]
Length = 317
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 96/298 (32%), Gaps = 4/298 (1%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
+ + K I + + + K + + S + + S
Sbjct: 18 VEEEIIQKAKRSYERLPILEVILERFSLAVGPAIKHYVGAICESSIDAIDYLPTGDALES 77
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ S W F + + +I+ LE G + RS + +EKK+
Sbjct: 78 MPSPALISVIESPDWDGPFALVIDPSFLISTLEITFGGRMAGRSEWVPRSFTAIEKKIGT 137
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ L++ + + + N + M++T+++
Sbjct: 138 EVTQLMLNELSETFGQLAQIEFTISHIET--NAQAMVLAPPNTGCVRLRMHVTMDDRDGY 195
Query: 197 FVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
F +++P L + + S + +V + R+ K L++
Sbjct: 196 FYIVMPFNALSNIRNMLVQPFHGGSLGGDKSWRKNMTEVISDTDVLVTARLFDTKVPLQE 255
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITDRINFDQKSLK 312
V+ K GQV+ L +G E+Y + G R ++IT+++ +++
Sbjct: 256 VLEWKRGQVLDLGIEVDQPVSLICSGHEMYMAQTGKRKNGRMALKITEQLKDEEEMTD 313
>gi|78224292|ref|YP_386039.1| flagellar motor switch protein FliM [Geobacter metallireducens
GS-15]
gi|78195547|gb|ABB33314.1| Flagellar motor switch protein FliM [Geobacter metallireducens
GS-15]
Length = 327
Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 37/287 (12%), Positives = 96/287 (33%), Gaps = 4/287 (1%)
Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
+ K + + ++ ++ V+I S KF +H+ +
Sbjct: 42 SSESKGNIPNLDIIYDSFIRYQRGTLSNRLGRIVEIKKVGAASFKFDDFLHTMPSPVAMA 101
Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEKKLAKRTIAQIS 143
I + LV T+++ +LG + ++ P + NR +++E +L ++ + +
Sbjct: 102 VYKADPLKGAALIAFDSTLVFTIVDCILGGTGSSVVPTVGNRMFTSIELRLVQKIVMDVL 161
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
A L + + + + V T+ M + IE + + +P
Sbjct: 162 ADLEKAWAPIYATKMGF--LRMEMNPRLVNIVPPEYQVVTMEMEIQIEEIIGKMIFAVPL 219
Query: 204 ETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
T+ + Q +++ + +++ + ++ +++ L G
Sbjct: 220 TTIDPVREKLKNGAQVDMMAIDPQWSFRLSKELLEAPLDLSVEVGGAIISMDELLNLTPG 279
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
I + ++ G + G N +IT I ++
Sbjct: 280 DTIMLDTPCNSDLVVKVGGVSKFMSAPGLRHGNKAAQITTIIGKGRE 326
>gi|115523171|ref|YP_780082.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisA53]
gi|115517118|gb|ABJ05102.1| flagellar motor switch protein FliM [Rhodopseudomonas palustris
BisA53]
Length = 275
Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 96/274 (35%), Gaps = 3/274 (1%)
Query: 45 FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
+ + S + S + S I+ ++ + + +W + IG + +
Sbjct: 4 LCAESLRSMSPSQSYFSLSGVGSDRLSEILDRYEGEAIAAVFYAQAWDARVLIGFDRDFI 63
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
T++E L GA P R S VE +A+ + L S + + L+
Sbjct: 64 YTMIELLFGADGAEPPLDMPRVFSNVELHVAEALFERFGKALQSSFSMASDVTFTLDRVE 123
Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQ 223
+ N + + + + ++IP L +S +
Sbjct: 124 T--RMDYLAIGRPNNMAVSAQILLQGLDRGGEMFIVIPHAALNPIRTALSQIVTGESAST 181
Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
+ + + V + + + TL +V +GQVI T L N +
Sbjct: 182 DPNWSRQLHSEIQRTEVVLRAVLEERPFTLGEVAKFHVGQVIKLNATPNTMVRLECNNQR 241
Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
++ C++G++ Y++++ + + ++ + L +
Sbjct: 242 LFWCQMGQLNGAYSLQVKESADQKREFIDGILSR 275
>gi|148359336|ref|YP_001250543.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
Corby]
gi|148281109|gb|ABQ55197.1| Flagellar motor switch protein FliM [Legionella pneumophila str.
Corby]
Length = 353
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 5/286 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
TG+ K + + + D +I K + S
Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMKSLPNP 130
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ I + V L++ G + + Q + E ++ +
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
++ A L + + F D + E + + +F I
Sbjct: 191 KLVANLIHAWEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 248
Query: 201 IPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+P L L + + + I+ + + +++ + +TL V++
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELSVSASMAETVSTLGQVMSW 308
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
K+G +P L G ++ LG + ++I I
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSTNEKRALKIIKIIR 352
>gi|148259983|ref|YP_001234110.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5]
gi|326403062|ref|YP_004283143.1| flagellar motor switch protein [Acidiphilium multivorum AIU301]
gi|146401664|gb|ABQ30191.1| flagellar motor switch protein FliM [Acidiphilium cryptum JF-5]
gi|325049923|dbj|BAJ80261.1| flagellar motor switch protein [Acidiphilium multivorum AIU301]
Length = 337
Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 102/312 (32%), Gaps = 7/312 (2%)
Query: 3 GQSIHKNTSPLHPILL---ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
G ++ + P +RL D ++ + + L + +V+
Sbjct: 28 GGALEDDALQPEPEAEQEASRLLYGRADSYERLPMAEVVFERLSRILAGSLRNLFQDNVE 87
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ T S + + + W + I V L E LLG
Sbjct: 88 VRLTRLASRRLADSFAEIAPMALLGVFRAREWDNLGLIHVDAMTVSNLTEILLGGRRVAA 147
Query: 120 PQ-LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
+ ++++ + L +R I + L + + + + E + T ++
Sbjct: 148 ATGQLPKPVTSISRNLTERLIRVVLHDLRNSFAPICDVTFDFERTET--DPRFATIGRNS 205
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQ 237
T +++ +I+P TL + L + + A + +
Sbjct: 206 GVALTARLSLHSAGRNCMIDIILPFATLEPVRELLLQQFMGEKFGRDSIWESHLAEELWH 265
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
++ ++ ++ + L V+ L++G +IP + L ++++ LG
Sbjct: 266 TDIELEAVLDEQTMKLGAVMDLRVGDIIPINAPRGSDVTLRCGSVDLFAGRLGVRHGRLA 325
Query: 298 IRITDRINFDQK 309
I I+ +++
Sbjct: 326 AEIRGWISRERE 337
>gi|296107383|ref|YP_003619083.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99
Alcoy]
gi|295649284|gb|ADG25131.1| flagellar motor switch protein FliM [Legionella pneumophila 2300/99
Alcoy]
Length = 353
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 77/286 (26%), Gaps = 5/286 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
TG+ K + + + D +I K + S
Sbjct: 71 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 130
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ I + V L++ G + + Q + E ++ +
Sbjct: 131 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 190
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
++ L + + F D + E + + +F I
Sbjct: 191 KLVTNLIHACEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 248
Query: 201 IPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+P L + + + I+ + + + + + +TL V+
Sbjct: 249 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 308
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
K+G +P L G ++ LG + +++ I
Sbjct: 309 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKIIR 352
>gi|52842019|ref|YP_095818.1| flagellar motor switch protein FliM [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629130|gb|AAU27871.1| flagellar protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 355
Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 77/286 (26%), Gaps = 5/286 (1%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
TG+ K + + + D +I K + S
Sbjct: 73 FTGQERIVKGQLPVLDKIYDRAVRLFAADIYHLTARDFEIKQDPLLITKHKEFMRSLPNP 132
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ I + V L++ G + + Q + E ++ +
Sbjct: 133 SLIGIYKFKPLRGKGIILFDSTFVYDLVDYYFGGNSQFGAQKDKTDFTATELRVMEVVTK 192
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
++ L + + F D + E + + +F I
Sbjct: 193 KLVTNLIHACEPIIQLD--VTKFNDETNPQLVNIAEPEEMLLVARFVLNFGKETGAFYFI 250
Query: 201 IPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+P L + + + I+ + + + + + +TL V+
Sbjct: 251 LPYSMLEPIKQQLELGASRPDDEIDPNWINSLKEELMDVELTVSASMAETVSTLGQVMAW 310
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
K+G +P L G ++ LG + +++ I
Sbjct: 311 KVGDFVPLE--INEEVTLDIEGTPSFTATLGSANEKRALKVIKIIR 354
>gi|317121825|ref|YP_004101828.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
DSM 12885]
gi|315591805|gb|ADU51101.1| flagellar motor switch protein FliM [Thermaerobacter marianensis
DSM 12885]
Length = 322
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 33/310 (10%), Positives = 93/310 (30%), Gaps = 6/310 (1%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M + K I L K + + + + ++ V++
Sbjct: 1 MNQGTARKGGRRSPVIRLYDFRRPDKFSKEQLRTLAMIHENVARLATGFLSGQLRTVVEV 60
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + I V + +L S+ + ++ +++ L
Sbjct: 61 DVLEVEETTYGEFITGLANPTVVAVFNLPPLESSAVMDLEPSIAFPMVDRLF--GGPGTG 118
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
R L+ +E + + + + + + + L + NE
Sbjct: 119 AAAGRGLTEIETVVMRVILQGLLGAVAEGWGQLVQVQGELVT--VAANPLFVQVQPPNEI 176
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQL 238
+ M + ++ L +P L Q + + + +
Sbjct: 177 AVRVVMAVRFGQQEGAWRLCLPYPLLEPVLPRLAVHQYYARETKSHARSRERWEEGLRHV 236
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + + + T+++++ L+ GQV+ R + G+ + GR G +
Sbjct: 237 PLPVTVVLGRTRLTVRELLALEPGQVLRLDTRAGGLVDVLVAGRPKFRGLPGRAGPRLAV 296
Query: 299 RITDRINFDQ 308
++ +R+ ++
Sbjct: 297 QVVERVAEEE 306
>gi|291558209|emb|CBL35326.1| Flagellar motor switch protein [Eubacterium siraeum V10Sc8a]
Length = 319
Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 20/315 (6%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + + T K KI + Y + L + L +
Sbjct: 14 LNTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 67
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115
S S + K+ ++ + + L SN + SN+L T+++ +LG
Sbjct: 68 SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAVLQLSNSLTFTMIDRMLGGR 127
Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
+R + +E + + + + +++++Q +++P LE + +
Sbjct: 128 GTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGYVDTNPKLESIET--NSRVISAA 183
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230
++E + + M +T+ + S + T+ + S + S + + +
Sbjct: 184 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 243
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
Q + + ++ TL+DV+ L++ +IP L + +LG
Sbjct: 244 LMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 303
Query: 291 RVGKNYTIRITDRIN 305
+ RI + +
Sbjct: 304 TLNGKKAFRIDNILK 318
>gi|258404714|ref|YP_003197456.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
5692]
gi|257796941|gb|ACV67878.1| flagellar motor switch protein FliM [Desulfohalobium retbaense DSM
5692]
Length = 336
Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats.
Identities = 34/271 (12%), Positives = 81/271 (29%), Gaps = 4/271 (1%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ + + ++ V + + ++ F + + +E + S S +
Sbjct: 60 ILDAFARNSGISMANRLKRSVSVKRVAIETETFENFLQDLQEQSLIGIVSFEPLRSGGLL 119
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
L LLE + G + E + +R L+++E + K + E
Sbjct: 120 IFDCPLSFCLLEVMFGGNSEAGISIPDRELTSIEINVLKNVMRDSCQDWEAAFEPLDELK 179
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
NL + + V ++ N+ L+IP + +
Sbjct: 180 TNLV--QAEINPRLVSIVSPETEVLVSRFSVKAGNIFGQMSLVIPFFAIEPYKEKLKNRM 237
Query: 218 NKSENQS--EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S + + ++ + + T+++++ LK G +I +
Sbjct: 238 FDVITVSGGQAWTKTIHDEMMEMETEVRAQFATASLTIREILNLKAGDIIELNMDRQAGQ 297
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ K + G +RIT
Sbjct: 298 RVLVEQKPKFQAVAGTRKGKKAVRITGTTGQ 328
>gi|95929861|ref|ZP_01312602.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
684]
gi|95134157|gb|EAT15815.1| flagellar motor switch protein FliM [Desulfuromonas acetoxidans DSM
684]
Length = 329
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 107/302 (35%), Gaps = 4/302 (1%)
Query: 4 QSIHKNTSPLHPILLA-RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
+S ++ SP + + L G L + + L ++ V +
Sbjct: 27 ESSDEDYSPEPRAVSSFSLVQSKGQATMRLANFDILLDGFARNLSFSLSNRLQRAVSVLR 86
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
S S ++ +IH + ++ SL N + +++ +E +LG E L
Sbjct: 87 ESISSMEYETLIHECSNHELYGILSLDPLKKNGLLIFDSSISFAQVEIMLGGVAEHSGDL 146
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R ++T+E + K I + LN+ S + +L + T ++ +
Sbjct: 147 PQRGMTTIETNILKEVIRESCLELNKAFSPIEGLESDLVRVE--SNPRLVTIVPADTEMM 204
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
+ I ++ L+IP +L S + A + ++V +
Sbjct: 205 VAAFRVKINEISGLLRLVIPYSSLDPIREKLKSELG-ASGPGGQWRSHLAHEVEDMDVAV 263
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ +++++ L++G ++ + GK +S G +R+ +
Sbjct: 264 SAQLAQITLNVREILDLRVGDILQLDCSVDQPVSVMVEGKGKFSGLAGLRDGKKAVRVLE 323
Query: 303 RI 304
R+
Sbjct: 324 RL 325
>gi|330940699|gb|EGH43710.1| flagellar motor switch protein FliM [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 222
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 79/224 (35%), Gaps = 6/224 (2%)
Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
+ A + LV L++N G ++ R + E ++ + + Q
Sbjct: 1 SLNLAKIKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQ 59
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
L + E + E +E V ++ ++ + +
Sbjct: 60 AFVDLKEAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTM 117
Query: 202 PQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
P + + + Q+ ++Q E ++ +NV + T I ++ L+D++ ++
Sbjct: 118 PYSMIEPIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMR 177
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
G VIP ++ ANG + +LG +++ + I
Sbjct: 178 PGDVIPVEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 219
>gi|217976217|ref|YP_002360364.1| surface presentation of antigens (SPOA) protein [Methylocella
silvestris BL2]
gi|217501593|gb|ACK49002.1| surface presentation of antigens (SPOA) protein [Methylocella
silvestris BL2]
Length = 314
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 52/300 (17%), Positives = 106/300 (35%), Gaps = 3/300 (1%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK 78
RL G + + + ++ S + + + ++ +++
Sbjct: 17 ERLLDAPGIAIDRMPMLHVILDRMIAQCSENLRQLSAPPAFFSVDTVAARRVGDVLDAYE 76
Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
+W S IG ++ + TL E L G P R LS++E +LA +
Sbjct: 77 NKVAIGVYHALAWDSRILIGLDHDFIFTLAEALFGGDGGEAPFTQGRKLSSLELRLAHKA 136
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ L ST +++ LE L N F T + + I
Sbjct: 137 LDLFGRALQSAFSTVSDTAFKLERVET--RLDFAVIAPRNAFGVTAKIKLRILGRHGEMF 194
Query: 199 LIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
++IPQ L + + + + + + + + I + L D+
Sbjct: 195 ILIPQAALNSVRQQLGRNLSDDAAVRDPAWTRQIEGEIGRAEIEVRGVIEERHFLLGDIA 254
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
LK+G ++ T L N + ++ C LG+ YT+RI + ++ +Q+ + L +
Sbjct: 255 DLKVGGILQLKSTPSTRVRLECNAEPLFWCNLGQGDGVYTLRIDESMSREQEFVDEMLSR 314
>gi|116624443|ref|YP_826599.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
Ellin6076]
gi|116227605|gb|ABJ86314.1| flagellar motor switch protein FliM [Candidatus Solibacter usitatus
Ellin6076]
Length = 293
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 36/270 (13%), Positives = 93/270 (34%), Gaps = 4/270 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
+ L + + L + + ++ S + ++ + LS +
Sbjct: 1 MRAIHLLHDTFVRNLVSSLSAYLRSYLTVNLVSVEQLSYAEFLDGLPSPTCIVSLGLSPY 60
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
N + + +LV +LE LLG + ++ + R ++ +E++L I L +
Sbjct: 61 DGNGVLELNPSLVFPILEMLLGGTGKSSATI-QRDITEIEQRLLDGLFRIILQDLREAWK 119
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
+E + NE V +I + + I + +P +
Sbjct: 120 AVTNVDFTIESMETE--PQLLHLLAPNEAVVSIGIEVRIGETVGMMNIAMPSIVIKMMRQ 177
Query: 212 ISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + + R Q + ++ + ++ D+++L+ G ++ F
Sbjct: 178 KFDQQWSVRKTHASEAEQFRVLRVLRQATLTVEALMEGPTLSVGDLLSLREGNLLTFDFP 237
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L NG ++ ++ G+ +I
Sbjct: 238 VERPIELVVNGACKFTGQVVSTGRKRACQI 267
>gi|291532053|emb|CBK97638.1| Flagellar motor switch protein [Eubacterium siraeum 70/3]
Length = 319
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 108/315 (34%), Gaps = 20/315 (6%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + + T K KI + Y + L + L +
Sbjct: 14 LDTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 67
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115
S S + K+ ++ + + L SN + SN+L T+++ +LG
Sbjct: 68 SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAILQLSNSLTFTMIDRMLGGR 127
Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
+R + +E + + + + +++++Q ++ P LE + +
Sbjct: 128 GTYQDT--DRDFTEIEINVMRSIVERFTSIMSQAWDGYVDTKPKLESIET--NSRVISAA 183
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230
++E + + M +T+ + S + T+ + S + S + + +
Sbjct: 184 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 243
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
Q + + ++ TL+DV+ L++ +IP L + +LG
Sbjct: 244 LMSTLSQSELTVTAVLDDTVLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 303
Query: 291 RVGKNYTIRITDRIN 305
+ RI + +
Sbjct: 304 TLNGKKAFRIDNILK 318
>gi|289548427|ref|YP_003473415.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
gi|289182044|gb|ADC89288.1| flagellar motor switch protein FliM [Thermocrinis albus DSM 14484]
Length = 315
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 100/295 (33%), Gaps = 12/295 (4%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
HK PL L + + + + L + M +
Sbjct: 29 THKEVKPLDISTLEHI------SASRIAGLELILERWVSSLKRSLSSVMVSIPAVLKEGV 82
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+FS + ++ + ++ + +L G + ++ +
Sbjct: 83 SVVRFSEFVSQLPFPSAIGFFNVHPLRGVSMLVLDPRIIYMTVSSLFGGPPKPY-KIEGK 141
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ +E ++ ++ + L + +T E + T E +
Sbjct: 142 EFTKIELRIVQKILEICYRELEEVWNTVMEVK--VIPQGLETNPSLLTIARPKEKFIVLK 199
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ +++E L IP+E+L + + +E +S ++ + + ++ +N++
Sbjct: 200 LLVSLEGSEGYMYLAIPEESLDPYKEVL---KGITELRSPEVSNKLLQALEEIPLNLEVI 256
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ +K L D++ +K+G + + + +G LG+VGK I+I
Sbjct: 257 LGRQKIQLGDLLNMKVGDTMILQKGLREPVEVRVSGVPKALAFLGQVGKRKAIKI 311
>gi|167750716|ref|ZP_02422843.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
gi|167656395|gb|EDS00525.1| hypothetical protein EUBSIR_01694 [Eubacterium siraeum DSM 15702]
Length = 331
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 20/315 (6%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ + + T K KI + Y + L + L +
Sbjct: 26 LDTHEEKEEIKEYDFRTPKKFT------KEQIKILERIFENYSRHLSSYITGLLRLYCKV 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-----SNFFIGCSNNLVITLLENLLGAS 115
S S + K+ ++ + + L SN + SN+L T+++ +LG
Sbjct: 80 SLASIEEQKYFEFSNALPDYTIMGIVDLGIEDDDIEESNAILQLSNSLTFTMIDRMLGGR 139
Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
+R + +E + + + + +++++Q +++P LE + +
Sbjct: 140 GTYQDT--DRDFTEIEINVMRGIVERFTSLMSQAWDGYVDTNPKLESIET--NSRVISAA 195
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI-----SLSSQNKSENQSEDLIDP 230
++E + + M +T+ + S + T+ + S + S + + +
Sbjct: 196 DADETMIIVAMEVTVNDSKSIVSFCMSAITMDQIMKKFSAKFSSGKRAGSPTKETERKEN 255
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
Q + + ++ TL+DV+ L++ +IP L + +LG
Sbjct: 256 LMSTLSQSELTVTAVLDDTMLTLRDVLNLQVNDIIPLNKPITDNVQLKVGSTCWFDGKLG 315
Query: 291 RVGKNYTIRITDRIN 305
+ RI + +
Sbjct: 316 TLNGKKAFRIDNILK 330
>gi|302387784|ref|YP_003823606.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
WM1]
gi|302198412|gb|ADL05983.1| flagellar motor switch protein FliM [Clostridium saccharolyticum
WM1]
Length = 339
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 46/281 (16%), Positives = 105/281 (37%), Gaps = 9/281 (3%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA--SLSS 90
KI S+ Y + ++S + + ++ ++ +N V + +L
Sbjct: 53 KILKSIFDNYSRIAGSQINSLFRTSSELSVVTVEEQRYYEFGNALSDNDVLTLVNVTLPD 112
Query: 91 WSSNFFIGCSNN--LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
S N + + + L+++L++ +LG + + + + +E L +R I I L
Sbjct: 113 SSKNPPLLINASMTLMLSLIDRMLGGVGDDTAVDTSYTYTEIEMALYRRVIQYIIGALKD 172
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
S+ + L + +E + + +++ ++ + + IP L+
Sbjct: 173 SWSSYINLNFELSRLE--ENPSMFQEIGVDETIVIVVLDVDMKECSGRLNVCIPGNLLMN 230
Query: 209 TTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
I ++ E S+D ++ + ++ TL DV L +G VI
Sbjct: 231 IFDIMDKRKHSAMGDEANSQDNKQEIMNSIKASDLLVRAQVGESMITLDDVYNLHVGDVI 290
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ + L G+ + +LG +N +RI D +
Sbjct: 291 NLGTPKDSDVQLYVEGQPWFRGQLGVHKRNVAVRIEDHVET 331
>gi|221635435|ref|YP_002523311.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
5159]
gi|221158064|gb|ACM07182.1| flagellar motor switch protein FliM [Thermomicrobium roseum DSM
5159]
Length = 334
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 94/308 (30%), Gaps = 14/308 (4%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
P + K + S+ + +F ++ V +
Sbjct: 22 PYDFRRPDKF------SKDHIRSIQSIHEAFDRFASNYLSAQVRSAVHCELGPIEQTTLG 75
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ V A L + L++ +LG + E P +++ +E
Sbjct: 76 DYLDRLPSQVVLCIAELEPLVGRIVLEIDFATASRLVDRMLGGAGEERPPFTATTITEIE 135
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
L + + L P + ++ + +E V + + +
Sbjct: 136 LLLLRELGNGLFGELAAAWEQVIRLQPQ--PCEVVLSGQQIQGMMPSEIVLLVQHQVRLF 193
Query: 192 NVASSFVLIIPQETLLKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+F +++P TL + N S +I + ++++ + +
Sbjct: 194 ESEGTFTVVLPASTLEPVLPRLNARVLFANPRRATSPQVIADLMAQLEEVSLQLRVELGR 253
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD- 307
+ T+++++ L+ G V+ + + + G+ G++ IRI + D
Sbjct: 254 ARLTVRELLALEPGDVLVLDQDVSFPLAVYVENEPCFYAFPGQRGRSLAIRIAGTLTEDW 313
Query: 308 --QKSLKN 313
+ L
Sbjct: 314 PRDEELDQ 321
>gi|206895079|ref|YP_002246696.1| flagellar motor switch protein FliM [Coprothermobacter
proteolyticus DSM 5265]
gi|206737696|gb|ACI16774.1| flagellar motor switch protein FliM [Coprothermobacter
proteolyticus DSM 5265]
Length = 326
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 38/307 (12%), Positives = 87/307 (28%), Gaps = 13/307 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q+ K +L K + L + + + + IS
Sbjct: 26 QTKEKVVRKYDFRRPDKL------SKEQLRTIQMLHENFARGASTELAGYLRSAMSISIV 79
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S + I S + + + + S + V +++ LLG + + ++
Sbjct: 80 SVDQVTYQEYIRSLSDPTFMYLVPIIDVT-SVIFEMSLDFVFAIIDKLLGGPGKPLREV- 137
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R L++VE L R + + + + L ++ V
Sbjct: 138 -RELTSVEATLMNRVMDVYLKHWLEAWKPIVQWN--LGKPTLEYSPGFVQIMPGSDVVIV 194
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQ--NKSENQSEDLIDPFARKTYQLNVN 241
I + + + +P + + + S+ +D + V
Sbjct: 195 ITYEEKLGEKTAIGTICVPYMAMEGFVQNLTAHRWFGVSKPTPDDWKTTLMEVIEDITVE 254
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + + +++ +G VI R L G G + + +T
Sbjct: 255 VSAVLGEASVGIGEILKWNVGDVIELSRRSDEEVDLLVEGNLFAKGIPGIYQRRKALLVT 314
Query: 302 DRINFDQ 308
R D+
Sbjct: 315 GRSEEDR 321
>gi|330899437|gb|EGH30856.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 216
Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 6/218 (2%)
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ LV L++N G ++ R + E ++ + + Q L
Sbjct: 1 IKPLRGTALFILDAKLVFKLVDNFFGGDGR-HAKIEGREFTPTELRVVRMVLDQAFVDLK 59
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ E + E +E V ++ ++ + +P +
Sbjct: 60 EAWQAIMEVN--FEYINSEVNPAMANIVGPSEAVVISTFHIELDGGGGDLHVTMPYSMIE 117
Query: 208 KTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ + Q+ ++Q E ++ +NV + T I ++ L+D++ ++ G VIP
Sbjct: 118 PIREMLDAGFQSDLDDQDERWVNALKEDVLDVNVPLTTTIAQRQLPLRDILHMRPGDVIP 177
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ ANG + +LG +++ + I
Sbjct: 178 VEL--SDSLVMRANGVPSFKVKLGSHKGKMALQVIEPI 213
>gi|329897652|ref|ZP_08272176.1| Flagellar motor switch protein FliM [gamma proteobacterium
IMCC3088]
gi|328921101|gb|EGG28510.1| Flagellar motor switch protein FliM [gamma proteobacterium
IMCC3088]
Length = 340
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 9/271 (3%)
Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
+ + + E + I + ++ F + + ++ +
Sbjct: 58 MITERFTRHFRLGLLEVLRSSPKIHVDAVKTVVFEKYLSDLAPPLSVNTIRINPLRGSSL 117
Query: 97 IGCSNNLVITLLENLLGASHETIP-QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
+ N+V L+N G I R + E ++ + I A L + +
Sbjct: 118 VVLDPNVVFAALDNFFGGFGRGIAGLPPGRMFTPTETRIINIMMELIFASLKEAWAPIMP 177
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLISL 214
E+ + + V ++++ I ++ P +L
Sbjct: 178 IEC--ENVSAEINPQFVQIADEKDLVVVCHLSVEISEAEVGRIDIVYPFASLKPIRDELR 235
Query: 215 SSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + D D + + + L +L+ G V+ F E
Sbjct: 236 ARVQSDTDTPRDAGLWHDDLETSASYAELEAVVTLGETEIPLHQFQSLRSGDVLWFKKYE 295
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
A + G +++ ++G V I+I +
Sbjct: 296 D--AQMIIEGVPVFAADVGTVKGQVAIKIVN 324
>gi|269836614|ref|YP_003318842.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
20745]
gi|269785877|gb|ACZ38020.1| flagellar motor switch protein FliM [Sphaerobacter thermophilus DSM
20745]
Length = 302
Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 34/284 (11%), Positives = 86/284 (30%), Gaps = 6/284 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + ++ + +F K+ V +S + + +
Sbjct: 17 SKDHLRSIQAIQEGFGRFAGNFLASKVRAAVHVSLVHVEQSTLGEFLDGLPFPTTLFISP 76
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL-YNRSLSTVEKKLAKRTIAQISAVL 146
L + NL +++ +LG ++ P S++ +E L + + A
Sbjct: 77 LDPLVGQAVMQIDMNLAFLVIDRMLGGPGDSTPAPRAGASVTEIEMLLLEELGQGLFAEF 136
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ + L E I + +E + +P L
Sbjct: 137 VNAWAQVTSL--RAPHCEVALGAMQVQGLLPTEIALVIRHEVRMEGATGRLTICLPASML 194
Query: 207 LKTTLISLS---SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+ N E L A + ++++ + + + D++ +++G
Sbjct: 195 EPILPRLNARLLFANPRAGVGEQLERDLAAQLERVSLAVRVELGRVTVRVADLLQVEVGD 254
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
VI + + + + + G++ +RI +R+ D
Sbjct: 255 VIRLDTAADSALPVLVEDRVRFLGQPGQIAGQLAVRIVERVTDD 298
>gi|13472567|ref|NP_104134.1| flagellar motor switch protein FliM [Mesorhizobium loti MAFF303099]
gi|14023313|dbj|BAB49920.1| flagellar motor switch protein; FliM [Mesorhizobium loti
MAFF303099]
Length = 315
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 126/311 (40%), Gaps = 9/311 (2%)
Query: 10 TSPLHPI-----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
TSP P ++ RL G G+ + + L K ++ + V + +
Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEAAQVIGTGRGMAERAAPLLQKSLTSELGVPVTVDLRA 61
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + F + + S+ S + + ++ L G ET
Sbjct: 62 VEVSRVAEARSRAGDTFAMTIVASSTSSDAMTLVIDAPAIAIMVCTLFGGDPETPASPIE 121
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R LS +E ++ Q++ LN S + L + + + L + I
Sbjct: 122 RDLSQIEVDVSTMLFQQVAQALN--GSGRRSLDLRLPVPRAMSGTEAKRHVLRDGAALRI 179
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ ++ + + + +PQ +L + + S+ + F+ + + V ++
Sbjct: 180 VLGISTPADSGTVTVTMPQRIVLASRDSAASTAGDDHG--PSWRERFSEEVMRSTVALEA 237
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ L + TL D+ +L++GQVI F ++ A LSA G+ ++ CE G++G+NYT+RI
Sbjct: 238 TMPLARLTLGDLASLEVGQVIDFDETAQSRARLSARGQTLFVCEFGKLGQNYTVRIRHPF 297
Query: 305 NFDQKSLKNFL 315
+ Q + +
Sbjct: 298 DAGQDFIDGLM 308
>gi|313672895|ref|YP_004051006.1| flagellar motor switch protein flim [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939651|gb|ADR18843.1| flagellar motor switch protein FliM [Calditerrivibrio nitroreducens
DSM 19672]
Length = 342
Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 43/304 (14%), Positives = 100/304 (32%), Gaps = 12/304 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K S R+ K + +L + + + D++ S
Sbjct: 36 KKISVYDFRRPDRV------SKEQIRSIRNLHDKFARNFSSSLSNFLRTITDVNLVSVDQ 89
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S + F+ S+ + + + +LV +++ LLG + ++ R L
Sbjct: 90 MTYGEFLMSLPDPTNFNIISMIPLDGSAVLEINPSLVFPIVDKLLGGPGLPMYKV--REL 147
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E+ + + I + L + + + NE V +
Sbjct: 148 TALEQHIMESVIYLLLKELEDTWKQVIP-NIKFRKEITENSPQVVQIVAQNEVVVLVVFE 206
Query: 188 MTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +V+ L +P L + + D +D + + +
Sbjct: 207 VKFADVSGMINLCLPAVVLEPILGKISSQDWLVGAKKVKGLDYLDRILDILMEAYLPLKL 266
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
I T+ D++ L G I F H+ + +L N + ++ E+G +G I + +
Sbjct: 267 EIGPTILTVGDILELVEGDTIVFEHKAEEDVVLKVNNLDKFATEMGVIGVKKGALIKNIL 326
Query: 305 NFDQ 308
+
Sbjct: 327 EESE 330
>gi|90415345|ref|ZP_01223279.1| flagellar motor switch protein FliM [marine gamma proteobacterium
HTCC2207]
gi|90332668|gb|EAS47838.1| flagellar motor switch protein FliM [marine gamma proteobacterium
HTCC2207]
Length = 330
Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats.
Identities = 33/296 (11%), Positives = 81/296 (27%), Gaps = 9/296 (3%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ LT + + + + E + + + KF +
Sbjct: 37 AMRHDLTNEDSSLGVNIGAVDMINERFIRQFRLGLLEVLRTTPKVGMGDVKIMKFGEYLR 96
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ-LYNRSLSTVEKKL 134
+ L+ ++V L+N G + R + E +
Sbjct: 97 DLSAPLSVNTIRLNPLRGYSMAVIEPSIVFAALDNFFGGFGRGFDKLPPGRLFTPTETSI 156
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NV 193
K + + L + + + E + N+ V + N+
Sbjct: 157 IKIMLDVLFGSLKEAWAPILAINC--EHVNSEINPQFAQIADENDLVVVSRFGADLGRNI 214
Query: 194 ASSFVLIIPQETLLKTTLISLSSQ---NKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ + L+ P +L + S + + ++ + + + +
Sbjct: 215 SGNIDLVYPYNSLKPIRDLLRSRVQTGDGDDISDKEWSAELQSAAVDAELEVTVELGEIE 274
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
TTL + G ++ F A + N ++ ++G G RI +
Sbjct: 275 TTLSKFEAMSEGDIVYFSK--SEHARVYVNSVPVFDADVGANGSQMAARIIKPLAP 328
>gi|333004050|gb|EGK23584.1| flagellar motor switch protein FliM [Shigella flexneri K-272]
gi|333017823|gb|EGK37130.1| flagellar motor switch protein FliM [Shigella flexneri K-227]
Length = 268
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 27/246 (10%), Positives = 71/246 (28%), Gaps = 8/246 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P P R+ + + + + + + DI+ +
Sbjct: 30 SGESDIRPYDPNTQRRVV------RERLQALEIINERFARHFRMGLFNLLRRSPDITVGA 83
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + + L + S +LV ++NL G ++
Sbjct: 84 IRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEG 143
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R + E+++ R + + + N N+ V
Sbjct: 144 REFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNT 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNID 243
++ I N+ F + +P + + ++ + S N+ ++ D R+ + +
Sbjct: 203 PFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV 262
Query: 244 TRINLK 249
Sbjct: 263 ANFADI 268
>gi|213028082|ref|ZP_03342529.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 247
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 8/241 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 14 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 67
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 68 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 127
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R + E+++ R + + + N N+ V
Sbjct: 128 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVV 186
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVN 241
++ I N+ F + +P + + ++ + S ++ ++ D R+ +
Sbjct: 187 NTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELE 246
Query: 242 I 242
+
Sbjct: 247 L 247
>gi|163758006|ref|ZP_02165094.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
DFL-43]
gi|162284295|gb|EDQ34578.1| flagellar motor switch transmembrane protein [Hoeflea phototrophica
DFL-43]
Length = 315
Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats.
Identities = 71/308 (23%), Positives = 125/308 (40%), Gaps = 2/308 (0%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ +T P LL R+ G GD IE SL L + F+ ++ +
Sbjct: 4 SAKDSKTDTYEFDPELLDRMIGAKGDAAVIEAKCHSLQSAMCGPLERAFEMATNVHLSAR 63
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
Q G ++ F ++ VF + WS + C LVI ++E LLG S
Sbjct: 64 PGEIQQGSRRQLLSVFGQDAVFCDTWIEGWSRDISALCGTKLVIAMVECLLGGSDPEELD 123
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
+ R LS +E ++ Q++ L + S + +D + + +
Sbjct: 124 IAARPLSGIELDMSLVVFEQLNDTLREVASKDPTAKAGAGKP-MLDIPEAEDDPKPDFHA 182
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
I + + +V + LI+PQ LLKT I S +N +D + + + +N
Sbjct: 183 AAITLELQFGSVVTPLTLILPQSILLKTKPI-TSKKNAPNAVDDDWAERLNARVSRSQIN 241
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + L + ++ L++G +I F LSANGK +Y+C LG+ G Y +++
Sbjct: 242 LQAAVALAPLPVGEISRLQVGDLIGFAQTGDIEVTLSANGKALYTCALGKSGARYMVKVE 301
Query: 302 DRINFDQK 309
D+
Sbjct: 302 GDAGPDEN 309
>gi|319790436|ref|YP_004152069.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
HB-1]
gi|317114938|gb|ADU97428.1| flagellar motor switch protein FliM [Thermovibrio ammonificans
HB-1]
Length = 347
Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 10/302 (3%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ P + + L + K + + + +S
Sbjct: 22 EESKPEVVPFDFSQVEHIKKGG------VPGLELLIERWVKIYREDVRRLVPQVGMVSKE 75
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S +F++ + ++ S+ + NF + LV ++ + G ++
Sbjct: 76 SVYITRFNNFLAKIPMPASYTIVSMKPFKENFLFVLDSRLVFVVISVMFGG-PAKPFKIE 134
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R + +E ++ + + Q + +E NE V
Sbjct: 135 GREFTKLEMRIIQDIVKIALEDFEQVWKEVYPIT--VEMKSIELNPALARIVSGNEKVIV 192
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ +M IE + F P + + S ++ + I K + N+ +
Sbjct: 193 VECSMDIEGYEAPFFFCFPYGMFMPIKDLIFS-ESLFAEKDPVWIRHLGEKLLKTNLRVW 251
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ KK ++K+V++ K G + + L + +LG+V Y + D
Sbjct: 252 LELTRKKFSVKEVLSWKEGDKLQLDVSKGDLLKLYVEESPKFYAKLGKVKDRYAALVYDF 311
Query: 304 IN 305
IN
Sbjct: 312 IN 313
>gi|117928062|ref|YP_872613.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
11B]
gi|117648525|gb|ABK52627.1| flagellar motor switch protein FliM [Acidothermus cellulolyticus
11B]
Length = 314
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 33/302 (10%), Positives = 89/302 (29%), Gaps = 8/302 (2%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G H + P R + + + + + + + +
Sbjct: 11 TGPRTHARSREPKPYDFRR---PNKLNRAHVRTLHIAYETFCRQFTTVLTSTLGVFSLVE 67
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + + + S + SL + + ++ +LG Q
Sbjct: 68 LVAVEQMSYVDYVESLPTPTFLALISLDPLQGTGILQLPLETAMLCVDRVLGGPGS--AQ 125
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R + VE ++ K + L + SP++ + + ++ V
Sbjct: 126 QPTRLPTDVETEIMKMVTRRAVQELRYAFEGLVQVSPDVIGIET--NPQFAQAAVPSDIV 183
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNV 240
++ + + + + L+IP L + S + + E + + +
Sbjct: 184 VVASLEIKVGDQDGAATLMIPFTGLYPVLEAAASPKRGDRRDLLERSQAALRARLEDVEI 243
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T +++ L +G V+ H +++A G G G+ +
Sbjct: 244 EVAVQFPYVALTPHELLNLSVGDVLSLRHPTNAPLLITAEGIPFAYAVPGSNGRQAACLV 303
Query: 301 TD 302
+
Sbjct: 304 VE 305
>gi|237755434|ref|ZP_04584059.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692398|gb|EEP61381.1| flagellar motor switch protein FliM [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 322
Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats.
Identities = 36/299 (12%), Positives = 92/299 (30%), Gaps = 10/299 (3%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P L ++ L + K + + + + +S +
Sbjct: 28 KEKPFDFSRLEKIQKGGFQ------GLEVLFEKWVKIFREEIRAEFPVVNMVSKGKIATM 81
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
+F I ++ ++ + + +V L+ L G ++ R +
Sbjct: 82 RFGDFIGKIPLPASYTIFNMKPLKDPSLLIIDSRVVFNLVSALFGG-GARPFKIEGREFT 140
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+E ++ ++ + + + +E E V + +
Sbjct: 141 KLEIRIIEKLVDIVLGSFEKIWKDIYPIE--IERKSIEFNPILVRIVSHAEKVIVAEIMI 198
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
IE + PQ L I + S S + +K ++N+N+ ++
Sbjct: 199 DIEGLEVPLTFTFPQMLFLPIKDILFTDTFGS-EVSPEWRKELIKKLLKVNLNLTLELDK 257
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+++ + ++G I ++ L K + +G++ K + IT I +
Sbjct: 258 FSVLVEEFLNYEVGTEIILNKKQSEELDLKVEDKVKFKASIGKLDKKFAAMITKIIKEN 316
>gi|296531735|ref|ZP_06894561.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
49957]
gi|296267934|gb|EFH13735.1| flagellar motor switch protein FliM [Roseomonas cervicalis ATCC
49957]
Length = 353
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 3/291 (1%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
P + + + + + ++ + D+ + + +
Sbjct: 50 PKRGLEALVGGAVRYEKLPMLDIVVDRLARLMTSSSRKFTADNADVVIDRTRPVRVGAFL 109
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + W + L+ ++++ LLG + + R + +E+
Sbjct: 110 DTVTLPALIGIIRIEEWDGYCLAALDSRLIGSIVDILLGGRRNALQPIEGRPYTPIERTF 169
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
++ ++ ++ L++ +S LE F T +T+E
Sbjct: 170 VEKFVSVVTNDLSRAFEAVSPASFRLERFE--ITPSYALITKPTAAALTFRAEITMEGRG 227
Query: 195 SSFVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+IP +L + K A + + +V + I +
Sbjct: 228 GFIDFLIPYASLEPVRDLLSQEVLGKKSGGDTIWRSHLAEELPRASVELTAVIESRTVPF 287
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+V + + G V R++ + G + L + +R+ D +
Sbjct: 288 SEVASWQPGSVFVLDKRQEDPVDVFCQGLMVCRATLATKDERVVLRVEDCV 338
>gi|225850288|ref|YP_002730522.1| flagellar motor switch protein FliM [Persephonella marina EX-H1]
gi|225646133|gb|ACO04319.1| flagellar motor switch protein FliM [Persephonella marina EX-H1]
Length = 323
Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 92/297 (30%), Gaps = 11/297 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ +P + + + + K ++ + +
Sbjct: 28 SDIAPFDFSEVEHIKKGG------LPGLEMIFERWIKIYRDDVRKITPRINMVWRENIYI 81
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+F+ + ++ ++ N + + LV T++ L G ++ R
Sbjct: 82 TRFNTFMLKIPLPSSYNIFTIRPLKENALLIIDSRLVFTIISVLFGG-PAKPFKVEGREF 140
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E K+ + + ++ +E NE V +
Sbjct: 141 TKLETKIVEDLVNSALKSFESVWNSIYPV--VIELRSIELNPNLAKIVSPNEKVVVVECR 198
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
M I+ + F PQ L I + + ++ K +LN+ + I
Sbjct: 199 MDIDGYEAPFYFCFPQSMFLPIKEIIYTQVS--VSEDPIWKKNLDEKIRKLNLKLTMEIA 256
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ ++D+++ K G + + L + ++ +LG+V Y I + +
Sbjct: 257 KLQFKIRDILSWKEGSELDLGVTKDDIFRLYVEDRHKFNVKLGKVNNKYAAMIVEPV 313
>gi|89068711|ref|ZP_01156097.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
HTCC2516]
gi|89045674|gb|EAR51736.1| possible flagellar motor switch protein FliM [Oceanicola granulosus
HTCC2516]
Length = 316
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 90/297 (30%), Gaps = 6/297 (2%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
+ ++ + + Y L K + D++ S +
Sbjct: 15 VEEQIIRLSSLNFERMPMLEVVFDRYVMALASAMKSFSGMPFDVTLRSFDYVTCGTALSG 74
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGAS-HETIPQLYNRSLSTVEKKLA 135
+ + + + WS N + S +L+ ++LE +LG RS + +E++
Sbjct: 75 LPAPSLSALTTATPWSGNVLMTLSPDLLFSVLEVMLGGREGRGRQLWKPRSFTAIERRFG 134
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
R I +Q E S ++ + S + +++T+
Sbjct: 135 GRLARMILDEFSQSFRQLSEVSFEIDSLESA--PETIAIAPSGSPAVWVTLDLTVGERGG 192
Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
+ +IP L + K V + ++ + ++
Sbjct: 193 ALYFLIPYTALDTVRPVLNQPFLGGKIGGDTSWRKDLEEKIEDTTVTLTASLHRLRVPVQ 252
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG-KNYTIR-ITDRINFDQK 309
+ + + GQ I + + + ++ ++GR +R I + +
Sbjct: 253 EALGWRKGQTIDLGISAEQPVDVVCGERRMFRGQMGRRATGQVALRLIEEDTGTEAD 309
>gi|68164513|gb|AAY87242.1| predicted flagellar motor switch protein [uncultured bacterium
BAC17H8]
Length = 321
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 35/307 (11%), Positives = 96/307 (31%), Gaps = 9/307 (2%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDI 60
G + + + + D + + + + +F + + I
Sbjct: 20 GAETNAPSGIMDGDEVRPFQFGSDDLSLLGDYHALRIINERFARLARSVFLPMLRIQPRI 79
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + F + + + + N + N + L + G +P
Sbjct: 80 SSFPPEVKTFDEYTAGIENFMSLNISRIEELRGNMLSVMTPNFISVLTNSYYGGKITALP 139
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ + E+++ + ++ L + + + EF
Sbjct: 140 SKKS-EFTATEERIIELVTDGLNETLQVAWRDLMPIK--ITYQNREINPQFASFVDGAEF 196
Query: 181 VTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQL 238
V + + + + A+SF +I P +TL S Q + + R +
Sbjct: 197 VIICSFVVQLPDTDAASFDIIYPLQTLKPIAAQLRSRLQADVAEDNHTWREKMERAVLNI 256
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + R+ ++ +++ +++G P + + ++ + +LG VG N +
Sbjct: 257 PLPVTARLGQPVVSMYNLINMQVGDTFPI--TIGEGVEVRIDTEDAFIGDLGDVGGNAAV 314
Query: 299 RITDRIN 305
+ R+
Sbjct: 315 NLKSRLK 321
>gi|221639474|ref|YP_002525736.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|221160255|gb|ACM01235.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
Length = 323
Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F + L IS + F S + + +
Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
N I + L ++ G +P + E+++ + +++ L
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
+ + + ++ + + V + + + N +SF ++ P +TL +
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + + R + + + R+ + L+ ++ ++ G V+P
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L G+ I+ G G + +T R
Sbjct: 289 -EAVSLLVEGQPIFEAAPGERGGQAALNLTRRH 320
>gi|77463631|ref|YP_353135.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
gi|126462463|ref|YP_001043577.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
gi|77388049|gb|ABA79234.1| Flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
gi|126104127|gb|ABN76805.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
Length = 323
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F + L IS + F S + + +
Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
N I + L ++ G +P + E+++ + +++ L
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
+ + + ++ + + V + + + N +SF ++ P +TL +
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + + R + + + R+ + L+ ++ ++ G V+P
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L G+ I+ G G + +T R
Sbjct: 289 -EAVSLLVEGQPIFEAAPGERGGQAALNLTRRH 320
>gi|157736463|ref|YP_001489146.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018]
gi|157698317|gb|ABV66477.1| flagellar motor switch protein FliM [Arcobacter butzleri RM4018]
Length = 368
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 11/317 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ KN S R+T K +++ + + VDI T+
Sbjct: 34 AKEKNYSIYDFKKPNRVTLDQ------LKALTTMHDKMLREFINDLSSMLRKIVDIKLTT 87
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + I S + S S+ I C+ + ++ +LLG+ +
Sbjct: 88 IEQMTYGEFILSIPQVTSLSTLSMKPLDGRIVIECNPTISHKVIADLLGSGAVNTMDNLD 147
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R L+ +E K+ + +L + S + +E ++ V +
Sbjct: 148 RELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIESSDTNAN--AIQIVSDHDIVLLV 205
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+TI+ + + P + ++ +N+ + + ++
Sbjct: 206 VFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGKNKKLSRKEDIKTLISGARMKVE 265
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + T +++ LK +I F + A + N KE +S G ++I
Sbjct: 266 AIMAETELTTAEILNLKENDIIVFNKNASSSSATVYINKKEKFSAVSGISNNRKAVQIKA 325
Query: 303 RINFD-QKSLKNFLHKR 318
++ + Q++L R
Sbjct: 326 NLDREKQETLDTLREMR 342
>gi|315635624|ref|ZP_07890887.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22]
gi|315479921|gb|EFU70591.1| flagellar motor switch protein FliM [Arcobacter butzleri JV22]
Length = 368
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 46/317 (14%), Positives = 105/317 (33%), Gaps = 11/317 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ KN S R+T K +++ + + VDI T+
Sbjct: 34 AKEKNYSIYDFKKPNRVTLDQ------LKALTTMHDKMLREFINDLSSMLRKIVDIKLTT 87
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + I S + S S+ I C+ + ++ +LLG+ +
Sbjct: 88 IEQMTYGEFILSIPQVTSLSTLSMKPLDGKIVIECNPTISHKVIADLLGSGAVNTMDNLD 147
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R L+ +E K+ + +L + S + +E ++ V +
Sbjct: 148 RELTEIEIKVLEHFYKMFIKILYKTWSDISSLNFRIESSDTNAN--AIQIVSDHDIVLLV 205
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+TI+ + + P + ++ +N+ + + ++
Sbjct: 206 VFEITIDEDSGFLSICYPISYIEPLLNKIVDKIFSEGKNKKLSRKEDIKTLISGARMKVE 265
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + T +++ LK +I F + A + N KE +S G ++I
Sbjct: 266 AIMAETELTTAEILNLKENDIIVFNKNASSSSATIYVNKKEKFSAVSGISNNRKAVQIKA 325
Query: 303 RINFD-QKSLKNFLHKR 318
++ + Q++L R
Sbjct: 326 NLDREKQETLDTLREMR 342
>gi|332558487|ref|ZP_08412809.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides WS8N]
gi|3435105|gb|AAC32319.1| flagellar switch protein [Rhodobacter sphaeroides]
gi|332276199|gb|EGJ21514.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides WS8N]
Length = 323
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 7/273 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F + L IS + F S + + +
Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
N I + L ++ G +P + E+++ + +++ L
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERVIELVTDRLNVALQVAWRDL 171
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
+ + + ++ + + V + + + N +SF ++ P +TL +
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + + R + + + R+ + L+ ++ ++ G V+P
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L G+ I+ G G + +T R
Sbjct: 289 -EALSLLVEGQPIFEAAPGERGGQAALNLTRRH 320
>gi|2315249|emb|CAA74715.1| flagellar switch protein [Rhodobacter sphaeroides]
Length = 323
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 88/273 (32%), Gaps = 7/273 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F + L IS + F S + + +
Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
N I + L ++ G +P + E++ + +++ L
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHVPTTRT-EFTATEERCIELVTDRLNVALQVAWRDL 171
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
+ + + ++ + + V + + + N +SF ++ P +TL +
Sbjct: 172 MALTFTVV--SREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + + R + + + R+ + L+ ++ ++ G V+P
Sbjct: 230 LRSRMQSDFVDDDRSWREKLERAILSIPLTLSARLCEPEVPLRQLMQMQPGDVLPVHLT- 288
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L G+ I+ G G + +T R
Sbjct: 289 -EALSLLVEGQPIFEAAPGERGGQAALNLTRRH 320
>gi|117926842|ref|YP_867459.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1]
gi|117610598|gb|ABK46053.1| flagellar motor switch protein FliM [Magnetococcus sp. MC-1]
Length = 332
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 41/309 (13%), Positives = 94/309 (30%), Gaps = 11/309 (3%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
K T+P K + + L +K+ +V +
Sbjct: 33 SASKDEKKTTPFT------FGQKTAIRVGALPGLDLINEHLASQLSFKLTQKVGREVHVQ 86
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ + F +H+ + + + S I +++ T+LE G ++ +
Sbjct: 87 PKTTTNQVFGRFLHTVEPPIFINILRVEPSQSMALISIDGDVMYTVLEGFFGGPGDS--E 144
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R+ S E K+ R + + S L + + +E V
Sbjct: 145 RPFRNFSPFEMKVIDRIMDVAREQIELSWKKLDP-SFRLVLARWENQPQFAAVMPLDETV 203
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS--EDLIDPFARKTYQLN 239
I ++ + + + + P L + E +D + +
Sbjct: 204 FLITFSVEVGDAEGNITICFPAVILELFKQQLKQGFQQKEEVEGASAWMDALKNELSLVR 263
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V++ + + +++ ++ LK+G + G + + C G V IR
Sbjct: 264 VDMTPVMGTVEMSVEQMLNLKVGDEFILGTDMSEEMAVQIGGMDKFMCHAGVVDGKRAIR 323
Query: 300 ITDRINFDQ 308
IT + +
Sbjct: 324 ITRTVQPQK 332
>gi|260466628|ref|ZP_05812816.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
opportunistum WSM2075]
gi|259029634|gb|EEW30922.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
opportunistum WSM2075]
Length = 315
Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats.
Identities = 58/311 (18%), Positives = 122/311 (39%), Gaps = 9/311 (2%)
Query: 10 TSPLHPI-----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
TSP P ++ RL G G+ + ++ L K + + V + +
Sbjct: 2 TSPGSPAQARSLIIERLVGDSGEADQVIDAGRAMAERAVPLLQKGLSSGLGVPVIVDLKA 61
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + +NF + + S + + ++ L G +
Sbjct: 62 VEVSRVTEARSRAGDNFAMTVVGSPASSDAMTLVIDAAAIAIMVSTLFGGDPDMPVSPIE 121
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R LS +E ++ +++ LN S + L + ++ + L + I
Sbjct: 122 RDLSPLEADVSTMVFQEVAQALN--GSGQRSLELRLPAPRAMSGIEARRHVLRDGAAIRI 179
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ ++ + S +++PQ +L S+ S F+ + + V ++
Sbjct: 180 VLGISTPVDSGSITVMMPQRIVLAGRDGIASASEADPGTS--WRARFSEEVMRSTVALEA 237
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ L + TL D+ L++GQVI F ++ A L A G+ ++ CE G++G+NYT+RI
Sbjct: 238 TMPLARLTLGDLAKLEVGQVIDFEETAQSRARLGARGQTLFVCEFGKLGQNYTVRIRHPF 297
Query: 305 NFDQKSLKNFL 315
+ Q + +
Sbjct: 298 DAGQDFIDGLM 308
>gi|146277687|ref|YP_001167846.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145555928|gb|ABP70541.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 323
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 7/272 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F + L IS + F S + + +
Sbjct: 53 ALRIINERFCRTARDVFLPMLRLQPRISSFPPEVRSFDDYRSSQDNFVSITASRIEELRG 112
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
N I + L ++ G IP + E+++ + +++ L
Sbjct: 113 NQMIVIPPPFISLLTDSYYGGQIRHIPTTRT-EFTATEQRVIELVTDRLNVALQVAWRDL 171
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLLKTTLI 212
+ + ++ + + V + + + N +SF ++ P +TL +
Sbjct: 172 MAL--SFTVVSREESMQFASFVDGEDMVVNCSFMVQLPNTEPASFDILYPLQTLKPISSQ 229
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + + R + + + R+ + L+ ++ ++ G V+P
Sbjct: 230 LRSRMQSDFVDDDRTWREKLERAILSIPLTLSARLCEPEVPLRQLMQIQPGDVLPVQLT- 288
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
L + I+ G G + +T R
Sbjct: 289 -EAVSLLVENEPIFEGVPGERGGQAALNLTRR 319
>gi|152990356|ref|YP_001356078.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2]
gi|151422217|dbj|BAF69721.1| flagellar motor switch protein FliM [Nitratiruptor sp. SB155-2]
Length = 326
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 11/301 (3%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ P L + + + K + ++ + +S S
Sbjct: 33 SDIRPFDFDELESIKKGGF------PGLELIYERWVKLFREEVRKVLPKINMVSKESIYI 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+F++ + + ++ ++ + + LV T++ + G ++ R
Sbjct: 87 TRFNNFMFNIPMPSSYTTFTMRPLKETALLVIDSRLVFTVISVMFGG-PAKPFKVEGREF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ +E + K I L + S +E NE V
Sbjct: 146 TKLETYVIKDFIDIALESLQEVFSAVYPVD--VEKRSIELNPALARITSGNEKVIISECI 203
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ I+ + P L I S Q NV + +
Sbjct: 204 VDIDGFEAPIYFCFPHGMFLPIKEIIYS--EFQGEIDPVWKRRVNEILLQTNVEVALELP 261
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ ++DV+ K G + ++ A L + K + C++G++ + Y + + +
Sbjct: 262 KQTYLMRDVLQWKEGMELILDIEKEEDAYLRISDKYKFRCKVGKIKEKYAALLKNEHQEE 321
Query: 308 Q 308
+
Sbjct: 322 E 322
>gi|294084394|ref|YP_003551152.1| surface presentation of antigens (SPOA) protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663967|gb|ADE39068.1| surface presentation of antigens (SPOA) protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 325
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 39/273 (14%), Positives = 89/273 (32%), Gaps = 7/273 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + +F +F + + IS + F + + +
Sbjct: 56 ALRMINERFARFARSVFLPMLRVQPRISSFPPEVKSFDEYAAGIDSFMSLNISRIEELRG 115
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
+ S + + L + G E + + E+++ + ++ L
Sbjct: 116 SMLTVLSPSFISVLTNSYYGGKIEG-NKSRRPEFTATEERVIQLINRGLNETLENSWRDL 174
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLI 212
E + L + + + V + + + ++ A+SF +I P +TL
Sbjct: 175 MEIT--LSHQSSEVNTQFASFVDGADLVIICSFVVQLPDIDAASFDVIYPLQTLKPIAAQ 232
Query: 213 SLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + D R + + + +++ ++ ++ LK G V P
Sbjct: 233 LRSRVQSDRIEDDQSWRDRMERAVLDIPIKMTAKLSEPVVSMSKLIRLKEGDVFPIQ--I 290
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + Y E+G VG I +T RI
Sbjct: 291 GDGVEVLMDEHRFYYGEMGEVGGQSAINLTSRI 323
>gi|291562030|emb|CBL40846.1| Flagellar motor switch protein [butyrate-producing bacterium SS3/4]
Length = 363
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 52/318 (16%), Positives = 112/318 (35%), Gaps = 14/318 (4%)
Query: 3 GQSIHKNTSPLHPI----LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDV 58
+ ++ PL P + K KI S+ Y + L +
Sbjct: 24 QEKKTESVQPLSPEEKNYIKYDFFSPRKFTKEKMKILRSVFENYARILTSQINGIFRVMT 83
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLG 113
DI+ Q ++ +++ EN + S + + +VITL+ ++LG
Sbjct: 84 DITVLDVQERRYYEYVNALHENDCMTMIDASIAGEEKMSVPLMLFVTPGMVITLINHMLG 143
Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
+ R S VE+ L KR + ++ L S + ++E + +
Sbjct: 144 GEDVVAVEDDYR-YSDVERALYKRIVEYMTGALKDGFSNYVSIAFSVE--HVEENPTMVQ 200
Query: 174 NRLSNEFVTTINMNMTIENVASS-FVLIIPQETLLKTTLISLSSQNKSEN-QSEDLIDPF 231
+ +E V I +N+ I A + +P L + ++ + +D +
Sbjct: 201 DVGLDETVAIIILNVDISGQAQEKVKICLPGNLLTVIFHSIDNRKHLARGFSYQDNKEKI 260
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ I ++ + LK + +++G VI + + L + ++ ++G
Sbjct: 261 MDNIRYSKLPITGQLGTVQLDLKGLYQIQVGDVIDLGKPKDSPVRLFVGRQPWFTGQMGC 320
Query: 292 VGKNYTIRITDRINFDQK 309
KN ++I I +
Sbjct: 321 YKKNVAVKIEKCIASQIE 338
>gi|163744328|ref|ZP_02151688.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
gi|161381146|gb|EDQ05555.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
Length = 315
Score = 175 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 4/295 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
L + + + + L K + +I TS + + +
Sbjct: 11 SLEETMIRQARESFQRLPTLEIIIDRLLLALVPDLKSYCTIAPEIELTSLEYMPYEDAME 70
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
S + + + A+ W S +L+ ++LE +LG T + R L+ +E+KL
Sbjct: 71 SIQSPSLIAIANAEGWGSQIACVVEPDLLFSVLEIMLGGRRATTQEWKPRGLTAIEQKLG 130
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+R L QC+ + + + M+M E+ +
Sbjct: 131 RRLAELSLKGLAQCLQDVSPVQ--FDIQSLESNPRSVMLAAPRTATVLVRMHMQFEDRSG 188
Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
L++P TL + + + + V I + L
Sbjct: 189 HMALVLPYGTLDEVSAQLAQPFLGGRSPTDSNARKDMNNQISSTTVTITGVLQEVTIPLH 248
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR-VGKNYTIRITDRINFDQ 308
+V+ K GQVI T + N + ++ G+ +R+ + +
Sbjct: 249 EVLEWKTGQVIDLGMTVDTPVVGMVNAQPMFQAAFGQRSNGALALRVIQSLLPKE 303
>gi|325295396|ref|YP_004281910.1| flagellar motor switch protein FliM [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065844|gb|ADY73851.1| flagellar motor switch protein FliM [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 348
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 39/308 (12%), Positives = 93/308 (30%), Gaps = 12/308 (3%)
Query: 2 RGQSIHKN--TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
S + +P L+ + L + K + + +
Sbjct: 20 NSSSEEQKLEVAPFDFSLVEHIKKGG------VPGLELLLERWIKIYSEEIRRLVPQINM 73
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
++ S +F++ + +S S+ NF + + LV ++ + G
Sbjct: 74 VTKESVYITRFNNFMSKIPLPASYSIVSMKPLKDNFLLVLDSRLVFVVISVMFGG-PAQP 132
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R + +E ++ + + L+ N+
Sbjct: 133 FKIEGREFTKLETRIIDDIVKISLSTFQHTWKDVYPVEFELKSIEL--NPALARIVSGND 190
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
V + M ++ + F PQ L + S + +K +
Sbjct: 191 RVIVVECTMDVDGYEAPFFFCFPQGMFLPIKELIFSEA-VFAEKDPVWEKHLTKKLLKTE 249
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K L+++++ K G I + L K + +LG++ Y
Sbjct: 250 LKLTLELTRKNFFLRELLSWKEGDEILLDISKDEFVKLYVEDKPKFWAKLGKIKDKYAAL 309
Query: 300 ITDRINFD 307
+ D IN +
Sbjct: 310 VVDMINGE 317
>gi|319781690|ref|YP_004141166.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317167578|gb|ADV11116.1| surface presentation of antigens (SPOA) protein [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 315
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 53/300 (17%), Positives = 115/300 (38%), Gaps = 4/300 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+++ RL G G+ + ++ L K + + V + + + +
Sbjct: 13 LIIERLVGDSGEAAQVIDAGRAMAERAVPLLQKTLTSEFGVPVVVDLKAIEVSRVPEARS 72
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ F + S+ S + + ++ L G + R LS +E ++
Sbjct: 73 RAGDTFAMTVIGSSASSDAMTLVIDAPAIAIMVCTLFGGDPDLPASPIERDLSQIEIDVS 132
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
Q++ LN S + L + + L + I + ++ +
Sbjct: 133 TMVFQQVAQALN--GSGKRSLDLRLPAPRAMSGTEAKRYVLRDGAAIRIVLGISTPADSG 190
Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
+ + +PQ +L + ++ + F+ + + V ++ + L + TL D
Sbjct: 191 TVTVTMPQRVVLASRDGAVPVSDDDHG--PSWRARFSEEVMRSTVALEATMPLARLTLGD 248
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ +IG VI F ++ A LSA GK ++ CE G++G+NYT+RI + Q + +
Sbjct: 249 LAGFEIGDVIEFEETAQSQARLSARGKTLFVCEFGKLGQNYTVRIRQPYDAGQDFIDGLM 308
>gi|188997560|ref|YP_001931811.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932627|gb|ACD67257.1| flagellar motor switch protein FliM [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 322
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 35/275 (12%), Positives = 87/275 (31%), Gaps = 4/275 (1%)
Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
L + K + + + + +S + +F I ++ ++ +
Sbjct: 48 LEVLFEKWVKIFREEIRTEFPVVNMVSKGKIVTMRFGDFIGKIPLPASYTIFNMKPLKDS 107
Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
+ + +V L+ L G ++ R + +E ++ ++ + + +
Sbjct: 108 SLLIIDSRVVFNLVSALFGG-GARPFKIEGREFTKLEIRIIEKLVDIVLGSFEKIWKDVY 166
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
+E E V + + IE + PQ L I
Sbjct: 167 PIE--IERKSIEFNPILVRIVSHAEKVIVAEIMIDIEGLEVPLTFAFPQMLFLPIKDILF 224
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ S S + +K ++N+ + ++ +K+ + +G I ++
Sbjct: 225 TDTFGS-EVSPEWRKELIKKLLKVNLKLILELDKFSVLVKEFLNYDVGTEIILNKKQSEE 283
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L K + LG++ K + IT I +
Sbjct: 284 LDLKVEDKVKFKASLGKLDKKFAAMITKVIKENDD 318
>gi|313901440|ref|ZP_07834898.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
DSM 13965]
gi|313468290|gb|EFR63746.1| flagellar motor switch protein FliM [Thermaerobacter subterraneus
DSM 13965]
Length = 321
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 31/299 (10%), Positives = 89/299 (29%), Gaps = 6/299 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M K + L K + + + + ++ V++
Sbjct: 1 MNQGVRRKGVRRAPVVRLYDFRRPDKFSKEQLRTLAMVHENVARLATGFLSGQLRTVVEV 60
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + + I V + +L S+ + ++ +++ L
Sbjct: 61 AVLEVEETTYGEFITGLSNPTVLAVFNLPPLESSAVMDVEPSIAFPMVDRLF--GGPGTG 118
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
R L+ +E + + + + + + S + L + NE
Sbjct: 119 AATGRGLTEIETVVMRAILQGLLGSVAEGWSQLVQVQGELVT--VAANPLFVQVQAPNEI 176
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQL 238
V + +++ ++ + +P L Q + + + Q+
Sbjct: 177 VVRVVLSVRFGQQEGAWRICLPYPLLEPLLPRLAVHQYYARETRSQARSREQWEEGLRQV 236
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + + + T++ ++ L G V+P R + + G+ + G+ G+
Sbjct: 237 PLPVQVVLGRAQLTVRQLLDLAPGHVLPLDTRAGSLVDILVGGRLKFRGLPGQHGQRLA 295
>gi|239628949|ref|ZP_04671980.1| flagellar motor switch protein FliM [Clostridiales bacterium
1_7_47_FAA]
gi|239519095|gb|EEQ58961.1| flagellar motor switch protein FliM [Clostridiales bacterium
1_7_47FAA]
Length = 296
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 35/286 (12%), Positives = 96/286 (33%), Gaps = 14/286 (4%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K +L + + L + +IS ++ +S ++ +F +L
Sbjct: 15 KERMSTVENLYDSFARALAPYLTGLLQSYCEISINGIVEKRYQEFSNSVPDHSLFGMITL 74
Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
S + + L ++E LLG R + +EK + + + +I+
Sbjct: 75 SPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYELT--RDFTDIEKAILQYVLGKIT 132
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
L + + +L + V + + + I+ +++ +++P
Sbjct: 133 EFLGEAWGQYLDVQASLTGLQT--NPHLLQMSAQEDVVIQVELEVVIDKLSARLNMVMPA 190
Query: 204 ETLLKTTLI-----SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+ + T + S + + E + + + + V + ++ +D++
Sbjct: 191 PNVEELTSKFGYSFAASQKKQDEEKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQ 250
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L G VIP + + + + + G + I++ +
Sbjct: 251 LTPGDVIPLNKKVDSGISIYVEDVACFEAKAGHTRLRKAVEISNEL 296
>gi|91200230|emb|CAJ73274.1| similar to flagellar motor switch [Candidatus Kuenenia
stuttgartiensis]
Length = 318
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 14/300 (4%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q + K R + ++ + + F + + V +
Sbjct: 31 QKVVKKVQHYDFRRPDRF------PREQKRQLQKISENMAVNMGLTFSQYVRTTVGVELI 84
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + + ++SF + S L+ + + + +++ LG + ++
Sbjct: 85 AIEEFSYELFLNSFTDLVCASVVDLTPYRGKGCLTLDAGFCLAMIDRGLGGPGKIQQKI- 143
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
R L+ +E+ + + ++ + + C + E + L+ + E +
Sbjct: 144 -RPLTIIEESVVSQVLSNVLHSMCLCWNDVAEIEWQIAKTDM--DLRSLQVAHNTESMIA 200
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
IN ++ E + V +P TL ++ E+ I + Q+ + ++
Sbjct: 201 INFAISGELGTGTLVFCLPVATLEAVMGKI----TEATLNREEEIVIIKQTLNQVPLLVN 256
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
T + + + +++ L++G VI ++ L + + G GK I+IT
Sbjct: 257 TILGTTQLSFNELINLRVGDVISLDNKITDHLSLEIDEVPKFFGTPGVSGKKLAIKITSV 316
>gi|149200770|ref|ZP_01877745.1| Flagellar switch protein FliM [Roseovarius sp. TM1035]
gi|149145103|gb|EDM33129.1| Flagellar switch protein FliM [Roseovarius sp. TM1035]
Length = 325
Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 7/274 (2%)
Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
+ + + +F + + IS + FSH + + A + + SN
Sbjct: 57 LRMVNERFCRLARPVFLPFLRMHPRISAFPPEVKSFSHYCDELENFVSLTTARVDALRSN 116
Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
I N V L G + +P + E ++ + I L
Sbjct: 117 QLIMLPPNFVSLLTNAYYGGNIAYLPG-GRAEFTASETRVIEIVTKGIYRALEAAWRDLI 175
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLIS 213
+ D L+ T S E V + + + ++ LI P + L
Sbjct: 176 PLD--FANPVHEDNLQFATFVESEEKVVCCSFIIQLPEADPATLDLIYPLQALKPIAARL 233
Query: 214 LS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
S Q+ + +N+ R+ + + L+ G+V+P +
Sbjct: 234 RSRMQSDQVADDLRWRSRLREAVMAVPLNVTARLAEPNVPISALTGLRPGRVVPVDLTLR 293
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L G ++ E G + +T RI
Sbjct: 294 P--QLLVEGTPLFDAEPGAQNGRAALSLTRRIEP 325
>gi|296274406|ref|YP_003657037.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM
7299]
gi|296098580|gb|ADG94530.1| flagellar motor switch protein FliM [Arcobacter nitrofigilis DSM
7299]
Length = 364
Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 50/320 (15%), Positives = 101/320 (31%), Gaps = 14/320 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S KN S R++ + K S+L + L + VDI S
Sbjct: 33 SKEKNYSIYDFKKPNRISNEQF------KAFSTLHDKMLRDLITDLSAMLRKIVDIKLYS 86
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + I S + + S+ I C+ + ++ LLG+ +
Sbjct: 87 IEQMTYGEFILSIPQLTSLNTLSIKPLDGRIVIECNPGISHKIIAELLGSGSVASTDNLD 146
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
R L+ +E ++ I + L + + +E +E V +
Sbjct: 147 RELTEIEVEIFDHFYKLIVSHLYKAWDEITTLNFKIE--SRDTNANAIQIISDHEIVLLV 204
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ TI+ + + P + + N+ +NI+
Sbjct: 205 VLEFTIDEESGFLSICYPISYIETLLNKIVTKIFAEGRNKKASRKKDITTLISGAKMNIE 264
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ +++ LK G VI F + L N KE + G ++I
Sbjct: 265 AIMAETFLKTSEILDLKEGDVIVFNKNSTSATSKLYINKKEKFLAISGLSNNRKAVQIKA 324
Query: 303 RINFDQ----KSLKNFLHKR 318
I+ ++ ++L+ +R
Sbjct: 325 NIDHEKMETLETLRGMREER 344
>gi|256376460|ref|YP_003100120.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
gi|255920763|gb|ACU36274.1| flagellar motor switch protein FliM [Actinosynnema mirum DSM 43827]
Length = 320
Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 94/303 (31%), Gaps = 9/303 (2%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
+P P + T + + + ++ + + + + + S +
Sbjct: 22 ANPGDPEVFD-FTRPVKLPRELLRVLQLCYETFSHRMATLLTSTLRVVCHAELISIEQLS 80
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
++ + + + L + + + +T +++LLG P R LS
Sbjct: 81 YAEHMAELANPTLLAPVVLEPLPGTALLEMTLSTAMTSMDHLLGGKGGPQP---ARPLSD 137
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E L + + Q L + + + P LE + + V +
Sbjct: 138 IETPLLRDLLDQALEQLRVGMESVADVRPELEGLEY--NPQLVQTSTPTDAVVVGYFELN 195
Query: 190 IENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ L IP +T+L + + E + + V + +
Sbjct: 196 VGEEQGQVSLCIPLQTILPSLRSYRDKVAVSASERATREAARNAITAGLQNVPVAVSVKF 255
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ D+V L+ G VIP HR + A G+ + + G + +
Sbjct: 256 QSVRLEPSDLVDLQPGDVIPLTHRLDEPLDIVAAGRTFANAVATKRGTRLACLVVAGADS 315
Query: 307 DQK 309
++
Sbjct: 316 EEN 318
>gi|254437125|ref|ZP_05050619.1| flagellar motor switch protein FliM [Octadecabacter antarcticus
307]
gi|198252571|gb|EDY76885.1| flagellar motor switch protein FliM [Octadecabacter antarcticus
307]
Length = 326
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 33/277 (11%), Positives = 101/277 (36%), Gaps = 7/277 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F+ + + I+ + F F + + ++
Sbjct: 52 ALRVINERFARLARTVFQPMLRVQPRITALPPEVKTFDEYCKEFPTLMCLTTSRINELRG 111
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
+ + + TL G + ++ E ++ + +S L
Sbjct: 112 SKMMVIQPEFISTLTNAYYGGVLGQKYKPST-EFTSTESRIIEIVTEGLSRNLLIAWQDL 170
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLI 212
+ + E + L+ + E V + + + + F ++ P +TL
Sbjct: 171 MPLTFSDE--SREENLQFASFVDGEETVIICSFTIELPQENKAKFDILYPLQTLKPIAAQ 228
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q++ + + R ++ + ++ +++ + +L+ ++ ++ G V P R
Sbjct: 229 LRSRMQSEVVDDDLTWRERLERAVTEVRLTVNVQLSKPRISLRQLIEVQKGDVYPIQLR- 287
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ +G+++++ ++G + I IT+++N +Q
Sbjct: 288 -DGLSVLVHGQKMFAADIGEIAGFNAITITEKLNQNQ 323
>gi|284989543|ref|YP_003408097.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
43160]
gi|284062788|gb|ADB73726.1| flagellar motor switch protein FliM [Geodermatophilus obscurus DSM
43160]
Length = 321
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 27/280 (9%), Positives = 91/280 (32%), Gaps = 6/280 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
+ ++ + + + + + + + + S +
Sbjct: 27 DFRRPTKLSREHVRVLQIAQEAFARQTTTVLTTMLRAGARLELLGIEQHSYDDYVASLPD 86
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ ++ + + ++ + ++++LG S +R ++ +E + +
Sbjct: 87 PCFLATFTIEPLAGKGVLAYPLDIAMAAVDHMLGGSGS--ADQPDRPMTVMETAITNHLL 144
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
++ + L S E P L + + ++ V + + I + + L
Sbjct: 145 GRLLSELAGSFSHIIELQPELSEIEY--NPQLAQAASGSDTVMVASYTIGIGSRSGEATL 202
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLI--DPFARKTYQLNVNIDTRINLKKTTLKDVV 257
++P + + S Q Q++ + + Q+ V++ R + + +D++
Sbjct: 203 VLPFSSFQVPLNNAASPQLSESAQAKRRRAFEALNERLTQVPVDVGVRFAPLEVSSEDLL 262
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+L +G V+ H + ++ N +
Sbjct: 263 SLAVGDVLLLRHPQDAPLEVTTNEVTFAYAIASNHRRRLA 302
>gi|160939629|ref|ZP_02086977.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
BAA-613]
gi|158437420|gb|EDP15184.1| hypothetical protein CLOBOL_04521 [Clostridium bolteae ATCC
BAA-613]
Length = 296
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 34/286 (11%), Positives = 95/286 (33%), Gaps = 14/286 (4%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K +L + + L + +I+ ++ S +++ +F ++
Sbjct: 15 KERMSTVENLYDSFARALAPYLTGLLQSFCEININGIVEKRYQEFSSSVQDHSLFGMITM 74
Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
S + + L ++E LLG +R + +EK + + + +I+
Sbjct: 75 SPANKDYNEAPLTMEVDTRLAFFMIERLLGGVGSEYD--LSRDFTDIEKAILQYVLKKIT 132
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
L + + +L + V + + + IE + + +++P
Sbjct: 133 EFLGEAWGQYLDIEASLTGLQT--NPHLLQMSAQEDVVIQVELEVVIEKLRARINMVMPA 190
Query: 204 ETLLKTTLISL---SSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVT 258
+ + T + +K +++ + + + V + ++ +D++
Sbjct: 191 PNVEELTSKFGYSFAVSHKKQDEDKQKSKRHYIEQHLLESEVELRAILHEFTLDAQDILQ 250
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
L G VIP + + L + G+ + I+ +
Sbjct: 251 LAPGDVIPLNKKVDSAVSLYVEDVACFEARAGQTKMRKAVEISREL 296
>gi|121602879|ref|YP_989408.1| flagellar motor switch protein FliM [Bartonella bacilliformis
KC583]
gi|120615056|gb|ABM45657.1| flagellar motor switch protein FliM [Bartonella bacilliformis
KC583]
Length = 323
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 52/316 (16%), Positives = 113/316 (35%), Gaps = 7/316 (2%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
++ K +L + G + L L+ I
Sbjct: 13 TQENEEKKQ----DVLAQHILRAAGLSSDDLMSFQYIFRDAASHLCSQINHYTPLEFTID 68
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
S + K I + + + S W ++ + LV + E GA+ I
Sbjct: 69 VVSLDTLKIDKITQTIGTDTLLIDFSSDRWGNDVIFVLDSVLVELITETFFGATEPKIIN 128
Query: 122 LYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R S E +++ ++ ++ T +S + NT +
Sbjct: 129 RNGRPFSPTECSISEHFGKLLANAMDSVFGTGDKSLLIFTQTRKAQ--EFNTETFHQSQM 186
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFARKTYQLNV 240
+ +++ + +++P+ I+ + + + ++ Q +V
Sbjct: 187 FSCTLSIKCGEAEAHLNILMPRSCHRPIHEAITRALRAPEKRMDPLWTKRLRKEVSQAHV 246
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I+ + TL +++ LK+GQV+P L + K +Y C LG++GKN++IR+
Sbjct: 247 QIEAFMQQGSMTLNELLNLKVGQVLPLPINAVKQVKLRSGDKSLYKCSLGKIGKNFSIRV 306
Query: 301 TDRINFDQKSLKNFLH 316
TD I+ +++ + +H
Sbjct: 307 TDPIDEEKEMINELVH 322
>gi|227873540|ref|ZP_03991785.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
gi|227840630|gb|EEJ51015.1| flagellar motor switch protein FliM [Oribacterium sinus F0268]
Length = 395
Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/295 (18%), Positives = 104/295 (35%), Gaps = 9/295 (3%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K ++ S+ Y + L DI+ + ++ +++F EN +
Sbjct: 62 KDKIRLLRSIFDNYARILTSQVNGIFRTMTDITVLELRETRYYEYVNAFHENDCMTIVDT 121
Query: 89 ---SSWSSNFFIG--CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
SN + S L +TL+ ++LG S I + + VE L KR + I
Sbjct: 122 YVQDKGKSNVPMMSYISPGLTLTLVSHMLGGSDSVIKTEEDYRYTDVEMALYKRIMEYIV 181
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIP 202
L S + + +E V MN+ I +A + +P
Sbjct: 182 HALGDGFSNYISAEFKIAKIET--NPSMVQEVGLDETVVLAVMNVDISGLAMERIRICLP 239
Query: 203 QETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L I + ++ + E+ D + + ++ + K ++D+ LK+
Sbjct: 240 GTLLEHMFKIIDNRKHLARGFAYENNQDTIMEHLKASSFPMTGQLGVVKLDIEDLYHLKV 299
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
G VI + + L + ++ ++G KN IRI DRI L
Sbjct: 300 GDVIDLNKAKNSAVKLYVGRQPWFTGKMGVYKKNIAIRIEDRIIQKDDKAMEALS 354
>gi|167770206|ref|ZP_02442259.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM
17241]
gi|167667528|gb|EDS11658.1| hypothetical protein ANACOL_01549 [Anaerotruncus colihominis DSM
17241]
Length = 329
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 14/273 (5%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K K L + + L + + D+ ++ ++ + + +
Sbjct: 43 KEQLKAMDGLHETFSRLLSSYLSGILRIGCDVQVLQIDEERYYEYNNALPDTALIGIVGM 102
Query: 89 SS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
I S + L++ LLG S + R + +E + +I
Sbjct: 103 DPEGEDYSEGTMIIDVSTTMGFYLVDRLLGGSGDDFNFT--RDYTEIEMAIIHTIFKEIV 160
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
L + E L+ + + V + +N+ + ++ + +P
Sbjct: 161 GKLEDSWKNSIEVKMTLDSIET--NSRLLQIFAPEDTVIIVVINIKAGKLNATMSICMPA 218
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTY-----QLNVNIDTRINLKKTTLKDVVT 258
+ + + +KS +++ + ++ ++ I + K LKD++
Sbjct: 219 DNMEEIIDKFSMKYSKSNRRTDPEKEQMRKEVLLRGVCDTDLPIKATFDQFKMDLKDILQ 278
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
L+ +IP + ++ +G ++ +LG
Sbjct: 279 LQPSDIIPLNKKITDDIQVTLDGLPWFTAKLGE 311
>gi|77918773|ref|YP_356588.1| flagellar biosynthesis protein, component of motor switch
[Pelobacter carbinolicus DSM 2380]
gi|77544856|gb|ABA88418.1| flagellar biosynthesis protein, component of motor switch
[Pelobacter carbinolicus DSM 2380]
Length = 331
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 97/271 (35%), Gaps = 3/271 (1%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ + L +M + + + Q ++ + L
Sbjct: 61 VLDTLARHLGISLTNRMQRSIGVRRSIMQVYEYDTFLQQLAGRDALGVIRLDPLRWRGVF 120
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
L LLE+LLG + + L RSL+ +E + + TIA LN+ + ++
Sbjct: 121 IFKEKLAFYLLEHLLGGAPDVNLNLPGRSLTAIETSVLRNTIADACLDLNKTFAPLEKIE 180
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
+L + + V + +T N+ VL++P L
Sbjct: 181 SSLVKIESST--RLINIVPGDASVLAAHFVVTGNNLEDEIVLVLPMAMLDPLKEKMREGS 238
Query: 218 N-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
SE+Q ++ Q++V++ ++ T++D++ K+G ++ +
Sbjct: 239 AVFSESQDRPWQTQLEQEIEQMDVDLSAQMATLNLTVRDILNFKVGDILDLGCAPSSPLQ 298
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ A G+ + G +RI+ RIN +
Sbjct: 299 VRAAGQPKFQAIAGTHQGKKAVRISGRINRN 329
>gi|294853149|ref|ZP_06793821.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
gi|294818804|gb|EFG35804.1| flagellar motor switch protein FliM [Brucella sp. NVSL 07-0026]
Length = 348
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 40 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 96
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 97 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 156
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 157 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 215
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 216 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 275
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 276 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 335
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 336 NQEEDLIDELV 346
>gi|266621918|ref|ZP_06114853.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
DSM 13479]
gi|288866391|gb|EFC98689.1| putative flagellar motor switch protein FliM [Clostridium hathewayi
DSM 13479]
Length = 295
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 13/285 (4%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K +L + + L M +IS T ++ +S + +F +L
Sbjct: 15 KERMSTVENLYDSFARALAPYLTGLMQSYCEISVTGIVERRYQEFSNSVPDRSLFGMITL 74
Query: 89 SSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
+ + L ++E LLG + +R + +EK + + + +I+
Sbjct: 75 IPDNKDYNEAPLVLEVDTRLAFFMIERLLGGAGTEYE--LSRDFTDIEKAILQYLLGKIT 132
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
+ + L + V + + + I+ +++ L++P
Sbjct: 133 EFIGDSWKEYLDVDAALTGLQT--NPHLLQVSAPEDVVIQVELEVRIDQLSAVLNLVMPA 190
Query: 204 ETLLKTTLISLSSQNKSENQSEDL----IDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ + T + S+ + E + + V + + +D++ L
Sbjct: 191 PNVEELTSKFGYTYAVSQKKDEAKQLAKRGYIEQHLLESEVELRAIFHEFSLDAQDILQL 250
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ G V+P + + + + LG + I +
Sbjct: 251 QPGDVVPLNKKVDSSIDIYVEDIACFEARLGHTKLRKAVEINKVL 295
>gi|182412236|ref|YP_001817302.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1]
gi|177839450|gb|ACB73702.1| flagellar motor switch protein FliM [Opitutus terrae PB90-1]
Length = 351
Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats.
Identities = 32/294 (10%), Positives = 90/294 (30%), Gaps = 5/294 (1%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
+P+ + + + + L + ++L + +++ + + +
Sbjct: 45 TPVLKVEPYDFRNPVFLSEVELRRLRLLHEDFIRYLAARLSLYLRMELGLKMAKLTTATY 104
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+ S + + + L +T+ + LLG R L+ +
Sbjct: 105 AKFTDSLPSPTHLCLFKVEPLIGVGILDINPRLALTIADRLLGGRG--HSVKAERYLTEI 162
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E L + + + T QE P + + + + V + +
Sbjct: 163 EIALLEDVVNIVLEEWCTQWKTEQELRPQI--IGHENNGRFLQTSPKDAIVLILTLEANF 220
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID-PFARKTYQLNVNIDTRINLK 249
+ + + +P T+ + + K S + + V + +
Sbjct: 221 GDCSEQIQIGVPYYTIEPVVKKMQARRQKDTAVSTTAKKAEWQAAYEHIKVPVRAEWSAM 280
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+L++VV+L++G V + N + +G +++T +
Sbjct: 281 DISLREVVSLRVGDVFELPASIFHETRVLLNNVPKFVGTVGLDSDRVAVQLTRK 334
>gi|256833228|ref|YP_003161955.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
20603]
gi|256686759|gb|ACV09652.1| flagellar motor switch protein FliM [Jonesia denitrificans DSM
20603]
Length = 308
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 6/282 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ +I + + ++ + I + + I + + +
Sbjct: 29 AREHARIVEMACETFARQWATQLTSRLRVMASIELDKLEMVTYDEYIATLDPHTTLVLFT 88
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
S + +N + L+ LLG + R L+ +E L + + A +
Sbjct: 89 ADETRSTALLQIPSNTTMLWLDYLLGGPGLERQE-NPRELTEIETALFRSLLDSSLADMR 147
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
S+ +P + + ++E V N ++T+ + S+ ++ + LL
Sbjct: 148 YAFSSITPMNPKIRGLQY--NPQFVQAVPASEAVLVANYSLTVGDRVSAATMMFAADALL 205
Query: 208 KTTLISLSSQNKSENQSEDLI---DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + S Q E+ + + V++ R N +D++ + +G V
Sbjct: 206 NPLKVGEGEADPSAAQREEQRVSFERLRLSMNDVPVDVGVRFNSITVRPRDIIDMAVGDV 265
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
I H + G+ I G GK +++TD
Sbjct: 266 IELRHAASKPLRIVVEGRTIGHGVPGNNGKQLAVKVTDTHRE 307
>gi|51246520|ref|YP_066404.1| flagellar motor switch protein (FliM) [Desulfotalea psychrophila
LSv54]
gi|50877557|emb|CAG37397.1| related to flagellar motor switch protein (FliM) [Desulfotalea
psychrophila LSv54]
Length = 323
Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 40/278 (14%), Positives = 91/278 (32%), Gaps = 2/278 (0%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
D K + + + + ++ + I +S F +
Sbjct: 48 DDKVKIPNFDIIMDSFARHYSILLSNQLQRTISIERIKLESFDFQDVFDKIAHPGAIGML 107
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I + +L +L+E LLGAS + NR +T+E + K I L
Sbjct: 108 DLPPLQQGGLILFNPSLSFSLVERLLGASLDLETVCLNRDPTTIELNVLKVIIDHACLGL 167
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
++ S + +L + + ++ V + + + +L+IP L
Sbjct: 168 DKAFSPLVNMNSSLVKIDSK--PRLMSITDPDDEVIACTFRVILGKDSGEILLLIPLAAL 225
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
S ++ A + ++ +I + + ++ D++ L++G ++
Sbjct: 226 EVLHEDLQHLLRASAKRTTTWQGTIAAEVKKMTADITAQPGRLELSVGDILGLQVGDILE 285
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + + G I +T+RI
Sbjct: 286 VDYDPSKPLKVLVENSPKFYGIPGTHNGKKAISLTERI 323
>gi|84514809|ref|ZP_01002172.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53]
gi|84510968|gb|EAQ07422.1| Flagellar switch protein FliM [Loktanella vestfoldensis SKA53]
Length = 320
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/296 (10%), Positives = 98/296 (33%), Gaps = 9/296 (3%)
Query: 14 HPILLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ D + + + + +F+ + + I+ + F
Sbjct: 30 DSKGIRDFVFGSDDLSLLGDYYALRVINERFARLARTVFQPMLRVQPRITALMPEVKTFD 89
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ + + + + + + L G Q + E
Sbjct: 90 QYCENAPVLMSLTTSRIDELRGSKMMVIQPGFISALTNAYYGGDLGLRYQP-RAEFTATE 148
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
++ + ++ L + + + E + L+ + +E V + ++ +
Sbjct: 149 TRVIEIITEGLNRTLLAAWQDLMQLTFSDE--SREENLQFASFVEGSETVIICSFSVQLP 206
Query: 192 NV-ASSFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ ++ P +TL S Q++ + + R ++ + I+ +++
Sbjct: 207 KADDARIDILYPLQTLKPIAAQLRSRMQSEVIDDDMTWRERLERAVSEVRLPINVQLSKP 266
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ +L+ ++++ G V P R + G++++ ++G V I IT +++
Sbjct: 267 RVSLRQLISITKGDVYPIQLR--EGLSVMVQGQKMFFADIGEVAGTSAITITQKLD 320
>gi|23499888|ref|NP_699328.1| flagellar motor switch protein FliM [Brucella suis 1330]
gi|161620211|ref|YP_001594097.1| surface presentation of antigens (SPOA) protein [Brucella canis
ATCC 23365]
gi|163844320|ref|YP_001621975.1| hypothetical protein BSUIS_B0131 [Brucella suis ATCC 23445]
gi|254702553|ref|ZP_05164381.1| hypothetical protein Bsuib36_01102 [Brucella suis bv. 3 str. 686]
gi|254711391|ref|ZP_05173202.1| hypothetical protein BpinB_14272 [Brucella pinnipedialis B2/94]
gi|254711990|ref|ZP_05173801.1| hypothetical protein BcetM6_01072 [Brucella ceti M644/93/1]
gi|254715060|ref|ZP_05176871.1| hypothetical protein BcetM_01082 [Brucella ceti M13/05/1]
gi|256014915|ref|YP_003104924.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
gi|256029979|ref|ZP_05443593.1| hypothetical protein BpinM2_04895 [Brucella pinnipedialis
M292/94/1]
gi|260568539|ref|ZP_05839008.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
gi|261216767|ref|ZP_05931048.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261318997|ref|ZP_05958194.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261319634|ref|ZP_05958831.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261753131|ref|ZP_05996840.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|265987000|ref|ZP_06099557.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|23463463|gb|AAN33333.1| flagellar motor switch protein FliM, putative [Brucella suis 1330]
gi|161337022|gb|ABX63326.1| surface presentation of antigens (SPOA) protein [Brucella canis
ATCC 23365]
gi|163675043|gb|ABY39153.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|255997575|gb|ACU49262.1| flagellar motor switch protein FliM [Brucella microti CCM 4915]
gi|260155204|gb|EEW90285.1| flagellar motor switch protein FliM [Brucella suis bv. 4 str. 40]
gi|260921856|gb|EEX88424.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292324|gb|EEX95820.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261298220|gb|EEY01717.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261742884|gb|EEY30810.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|264659197|gb|EEZ29458.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
Length = 316
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|119714993|ref|YP_921958.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
gi|119535654|gb|ABL80271.1| flagellar motor switch protein FliM [Nocardioides sp. JS614]
Length = 335
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 87/273 (31%), Gaps = 7/273 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ ++ + + +F + +S S + ++ I S + + S
Sbjct: 56 SREHSRMLQLAFDDFCRQATTVFTSSLRTVCGVSLASIEQRTYAEYIDSLDASTYLTSFS 115
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
V+T ++++LG + R L+ +E +A I ++ L
Sbjct: 116 AEPLFDRGVFEIPLLAVMTCVDHMLGGPGRL--EQPERPLTEIEAGVASGMIERLLGELR 173
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+++ P ++ + +++ + ++ + I + + +P +LL
Sbjct: 174 YSMASIVAFEPVVKGVEY--SPQFVQVAGASDVMVAASLELRINDRTFRMTMCMPFSSLL 231
Query: 208 KTTLISLSS---QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
L + + + Q A + ++ V + + + ++ L+ G
Sbjct: 232 PHLLRAAAPAPVSERERAQRAQAAAELADQFQRVPVEVAVSLRPTTLSPMELAALRPGDA 291
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ H + +G G G
Sbjct: 292 LRLRHPAAAPLEVVVDGTCFAHATPGTSGFRLA 324
>gi|256158143|ref|ZP_05456059.1| hypothetical protein BcetM4_04820 [Brucella ceti M490/95/1]
gi|256252906|ref|ZP_05458442.1| hypothetical protein BcetB_01037 [Brucella ceti B1/94]
gi|261219994|ref|ZP_05934275.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|265996661|ref|ZP_06109218.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|260918578|gb|EEX85231.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|262550958|gb|EEZ07119.1| conserved hypothetical protein [Brucella ceti M490/95/1]
Length = 316
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVQLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|254706317|ref|ZP_05168145.1| hypothetical protein BpinM_04820 [Brucella pinnipedialis
M163/99/10]
gi|261313764|ref|ZP_05952961.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261302790|gb|EEY06287.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
Length = 316
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDTSSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|256059632|ref|ZP_05449829.1| hypothetical protein Bneo5_04675 [Brucella neotomae 5K33]
gi|261323602|ref|ZP_05962799.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261299582|gb|EEY03079.1| conserved hypothetical protein [Brucella neotomae 5K33]
Length = 316
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + + + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQGVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|320354329|ref|YP_004195668.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
propionicus DSM 2032]
gi|320122831|gb|ADW18377.1| surface presentation of antigens (SPOA) protein [Desulfobulbus
propionicus DSM 2032]
Length = 345
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 5/287 (1%)
Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
T G+ + + + + + + + + F + K
Sbjct: 55 TRGSGEMRVPN--LDIVLDSFARKFSTSLTNTLMRNFIVEREDITTTNFQQSLLDLKSQG 112
Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
+S + TLLE +LG+S + +R+L+T+E + K +
Sbjct: 113 AVGIYGISPLKHGCLFHFDTLMAFTLLEIMLGSSRSSESLPLDRNLTTIEMFVLKTIMQD 172
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLI 200
I L + E L + + V N+ + N + LI
Sbjct: 173 ICNELQTAMRPVVELQAQLTKVE--NNFRLVNIVEPEVEVLVTRFNIQLGNELCGQMRLI 230
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
IP TL + ++ + + AR+T ++ + R L T++ ++ L+
Sbjct: 231 IPYLTLEPLREKFKALVTITQAAANTWTEIIARETLEMESQVIARSGLITMTIRRILGLQ 290
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
G +I + + + ++ G +T R
Sbjct: 291 PGDIIDLQYDPDRPLTVLVEDQPLFLAIPGERNGKKAFHVTGRYTTQ 337
>gi|163783035|ref|ZP_02178030.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
gi|159881715|gb|EDP75224.1| flagellar motor switch protein FliM [Hydrogenivirga sp. 128-5-R1-1]
Length = 322
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 41/296 (13%), Positives = 95/296 (32%), Gaps = 14/296 (4%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
P L R+ T + + + + +IS + ++ K
Sbjct: 33 KPFDINELERI------SPTRLIKLEQVINRWIASATAELRGIIFNLDNISLSEIKTEKI 86
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
S + + ++ + + ++ L+ T++ + G ++ +S +
Sbjct: 87 SDFVLKIPLPAAIAVLNVEALNGRLYMVLDTRLIYTIISIIFGG-PAQPYKVEGKSFTKF 145
Query: 131 EKKLAKRTIAQISAVLNQCI-STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E+K+ + + LN +E D ++ NE V I + +
Sbjct: 146 EQKIINNLVEVLVRHLNTAWVELIREGEVQFVGIE--DNPRRLITISRNEIVIVITLEVE 203
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
IE L IP +T+ I ++ +S + D V ++ +
Sbjct: 204 IEGFKGYVYLAIPMKTIDPIKDILRTADTESGD----FRDVILSNLMGTPVLLEAILPTL 259
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ +++ +K G IP R + G ++ LG ++I +
Sbjct: 260 VMNVHELLEMKEGDFIPLDPRATDSITVKVAGVPMFKGILGESAGRKAVKIKSFVE 315
>gi|306846301|ref|ZP_07478862.1| surface presentation of antigens protein [Brucella sp. BO1]
gi|306273296|gb|EFM55165.1| surface presentation of antigens protein [Brucella sp. BO1]
Length = 316
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 113/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G G ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGGD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T P ID + + L + T
Sbjct: 125 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRDNLELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDFIDELV 314
>gi|332669206|ref|YP_004452214.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
gi|332338244|gb|AEE44827.1| flagellar motor switch protein FliM [Cellulomonas fimi ATCC 484]
Length = 309
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 27/285 (9%), Positives = 77/285 (27%), Gaps = 6/285 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
L + + + ++ + +++ + +
Sbjct: 21 DFRRPLTLAREHSRHLEMAFQRVARQFATQLTARLRVVSQVTFEDLELRTYDEYTGGLPT 80
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
++ + + ++ L G + R L+ +E L + +
Sbjct: 81 PTAMVMCAMEPSRQTAVLQIPVGATLVWIDYLFGGDGRG-DEREGRELTDLEWTLVRDLL 139
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
L + S + + + E V + +
Sbjct: 140 QHAIGDLEYSFAGVTPMSATVRSVQY--NPQFAQVVAAQETVLVAVFLLRVGEREDRMTF 197
Query: 200 IIPQETLL---KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
++P + LL +++ + + + + R + V++ + +DV
Sbjct: 198 MLPSDLLLGALRSSEGADARSEEERQVARIAHAELERAVQDVPVHVAVQFRPVTVHPRDV 257
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
V L +G V+P H + +G + G G ++
Sbjct: 258 VNLTVGDVLPLSHPSSEPLDVVVDGIVLARAAAGSHGSRLACQVV 302
>gi|306837356|ref|ZP_07470235.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
2653]
gi|306407548|gb|EFM63748.1| surface presentation of antigens (SPOA) protein [Brucella sp. NF
2653]
Length = 348
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 47/311 (15%), Positives = 110/311 (35%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D
Sbjct: 40 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPV 96
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 97 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDR 156
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T P ID + + T
Sbjct: 157 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 215
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 216 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 275
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ A ++++ C LG+ G ++T+++ D +
Sbjct: 276 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPV 335
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 336 NQEEDFIDELV 346
>gi|254699436|ref|ZP_05161264.1| hypothetical protein Bsuib55_01034 [Brucella suis bv. 5 str. 513]
gi|261749887|ref|ZP_05993596.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261739640|gb|EEY27566.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
Length = 316
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMLLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|225569967|ref|ZP_03778992.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
15053]
gi|225161437|gb|EEG74056.1| hypothetical protein CLOHYLEM_06062 [Clostridium hylemonae DSM
15053]
Length = 336
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 104/286 (36%), Gaps = 9/286 (3%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K K+ + Y + + ++ S + ++ + EN V +L
Sbjct: 48 KDKLKLLKGIYDNYGRLASSRLNGVLRTACEMEVLSVEEQRYFEFSNILSENDVMMMLNL 107
Query: 89 S-SWSS---NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
S I S L++ +++ +LG + + + + S +E L K+ + +
Sbjct: 108 KLPDESKNPPMMIHISQKLMVNMIDRMLGGTGDDDDVDSSYTYSEIESALYKKVMKYLLD 167
Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
+ + + L D + +E V + +N+ ++N+ + IP
Sbjct: 168 ITRDAWGNYIKIN--LGDQRLEENPGLFQEISLDEPVAIVLLNVKMQNIDGRITICIPGN 225
Query: 205 TLLKTTLISLSSQNKSENQSE---DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L+ I ++ E + + + + + I + + ++K+V LK+
Sbjct: 226 LLMNIFNIIDKRKHVDGLYDEGIANSRELIMTRLNRSTMEIKAELAEAQLSMKEVCGLKV 285
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
G VI ++ +L + + +LG KN ++I I +
Sbjct: 286 GDVIDLNKSRESDVVLYVEEQPWFRGKLGAHNKNAAVKIKQCIQEE 331
>gi|17989455|ref|NP_542088.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
16M]
gi|256043048|ref|ZP_05445993.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 1 str.
Rev.1]
gi|256111966|ref|ZP_05452917.1| flagellar motor switch protein FLIM [Brucella melitensis bv. 3 str.
Ether]
gi|260564280|ref|ZP_05834765.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
16M]
gi|265989486|ref|ZP_06102043.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993415|ref|ZP_06105972.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|17985334|gb|AAL54352.1| flagellar motor switch protein flim [Brucella melitensis bv. 1 str.
16M]
gi|260151923|gb|EEW87016.1| flagellar motor switch protein FliM [Brucella melitensis bv. 1 str.
16M]
gi|262764285|gb|EEZ10317.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263000155|gb|EEZ12845.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 316
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 48/311 (15%), Positives = 112/311 (36%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|325527237|gb|EGD04619.1| flagellar motor switch protein FliM [Burkholderia sp. TJI49]
Length = 220
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 21/196 (10%), Positives = 51/196 (26%), Gaps = 8/196 (4%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
P + R+ + + + L M +IS + +
Sbjct: 33 SGVRPYNIATQERIVRG------RMPGLEIINDRFARLLRIGIFNFMRRTAEISVSQVKV 86
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K+S + + + NLV +++NL G ++ R
Sbjct: 87 LKYSEFTRTLPIPTNLNLVHVKPLRGTSLFVFDPNLVFFVVDNLFGGDGRFHTRVEGRDF 146
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ E+++ R + + + + + NE V +
Sbjct: 147 TATEQRIIGRLLNLVFEHYTTAWKSVRPLQFEFVRSEMHT--QFANVATPNEIVIVTQFS 204
Query: 188 MTIENVASSFVLIIPQ 203
+ + +P
Sbjct: 205 IEFGPTGGKLHICMPY 220
>gi|148554378|ref|YP_001261960.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
gi|148499568|gb|ABQ67822.1| flagellar motor switch protein FliM [Sphingomonas wittichii RW1]
Length = 331
Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 29/288 (10%), Positives = 84/288 (29%), Gaps = 10/288 (3%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+ + L + + + ++ +F + ++ S
Sbjct: 52 RPVAHLAHLERMNERIARRLRDVIEPIAQTRSKVDPIPLETRRFDEWQRNQADHMSLSLF 111
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + V +++ G + + + E++L +R I VL
Sbjct: 112 RVRPVKGMMMVAVEPSFVTNMVDAFYGGTGNGLTTKGG-EFTPSEQRLQRRLTDAIVEVL 170
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQET 205
+ S T + ++E V + + + ++ ++ P
Sbjct: 171 TRVWSDTFPLQFDFSTHET--NAAFANMVRADEPVVVQSFTIKPGMSRSTRVEILYPLSL 228
Query: 206 LLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
L + +Q ++ + + + + + + + ++ ++ LK G V
Sbjct: 229 LQPIEDQIAARTQAGADGDDPEWKGKLLTALDAVALPVRSVLARPEMSVAQLLALKPGDV 288
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
IP L + +G + I +++ LK
Sbjct: 289 IPVNL--SQTVPLLVGNRRFAEGTIGEQDGRAALMIESL---NKEVLK 331
>gi|114777574|ref|ZP_01452555.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans
PV-1]
gi|114552045|gb|EAU54562.1| flagellar motor switch protein FliM [Mariprofundus ferrooxydans
PV-1]
Length = 330
Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 8/295 (2%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ + R D + +L + + + E DV + +S +S + I
Sbjct: 38 EHVEVYRFNVNDEDSPERYPMFVNLQERLIEMFDEQWHELFKRDVSVQVSSLESLFYKDI 97
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
+ S V+ + + L++ ++ +LG + ++LS VE +
Sbjct: 98 V-SVDAPQVYFVFEADGY-GRMLVSFDTALIVAFVDAMLGGDGDADDNP--QTLSAVELR 153
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN- 192
L++R +IS L +L + + E + ++ + +
Sbjct: 154 LSERIADKISKTLGDLWQPVYPLDFSLHKLDY--DPQFLAVTGAMEKCFSTFFDIKLNDE 211
Query: 193 VASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ + P+ L + + ++S + + + ++ Q + + +
Sbjct: 212 LNGQMGIYYPRSFLEPMLDVLRVTVTDESGDTDMEWTNGLMQRLSQTPAALRFELGRCQI 271
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ + + G +P R L + ++ G IT+ +
Sbjct: 272 DIGAFLKMMPGDFLPISTRANDPCSLWIDEIPLFQATPGEKNGGLAAEITEPVQP 326
>gi|225685986|ref|YP_002733958.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
23457]
gi|256262888|ref|ZP_05465420.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
63/9]
gi|225642091|gb|ACO02004.1| Flagellar motor switch protein fliM [Brucella melitensis ATCC
23457]
gi|263092725|gb|EEZ16934.1| flagellar motor switch protein FliM [Brucella melitensis bv. 2 str.
63/9]
gi|326410312|gb|ADZ67376.1| Flagellar motor switch protein fliM [Brucella melitensis M28]
gi|326553605|gb|ADZ88244.1| Flagellar motor switch protein fliM [Brucella melitensis M5-90]
Length = 316
Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 48/311 (15%), Positives = 111/311 (35%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S F + + + W + ++ LV +++E + GA P +
Sbjct: 65 ESTDKMAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDLIDELV 314
>gi|254720632|ref|ZP_05182443.1| hypothetical protein Bru83_14198 [Brucella sp. 83/13]
gi|265985676|ref|ZP_06098411.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|264664268|gb|EEZ34529.1| conserved hypothetical protein [Brucella sp. 83/13]
Length = 316
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 47/311 (15%), Positives = 110/311 (35%), Gaps = 5/311 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAEAGPV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDGDR 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLADALDRVFNTGSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 243
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ A ++++ C LG+ G ++T+++ D +
Sbjct: 244 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRPRAGNQQLFKCTLGKSGIHFTVKVGDPV 303
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 304 NQEEDFIDELV 314
>gi|254461418|ref|ZP_05074834.1| flagellar motor switch protein FliM [Rhodobacterales bacterium
HTCC2083]
gi|206678007|gb|EDZ42494.1| flagellar motor switch protein FliM [Rhodobacteraceae bacterium
HTCC2083]
Length = 324
Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 32/272 (11%), Positives = 88/272 (32%), Gaps = 7/272 (2%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ + + +F+ + + IS F S + +
Sbjct: 54 ALRVINERFARLARSVFQPMLRVQPRISAQLPTVQTFDEYSKDSPSLMSLSTSRIDELRG 113
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
+ + + L G + + E ++ + ++ VL
Sbjct: 114 SKMMVMQPEFISALTNGYYGGEL-GLKHALRSEFTATETRVIEIITNGLNDVLLTAWQDL 172
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS-SFVLIIPQETLLKTTLI 212
S + + L+ + + + + + S + ++ P +TL
Sbjct: 173 MPLSFSEH--AREENLQFASFVDGGDTIIVCKFTVQLPKAESATLDILYPLQTLKPIAAQ 230
Query: 213 SLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q+ + + Q+++ ++ +++ K +L+++V L+ G V P +
Sbjct: 231 LRSRMQSDVIEDDLTWRERLEQAVMQVSLPMNVQLSKPKVSLRELVELEAGDVFPIQLKT 290
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ +G+E++ ++G V I I +
Sbjct: 291 G--LGVMVHGQEMFVADIGEVAGTSAITIIRK 320
>gi|269796385|ref|YP_003315840.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
gi|269098570|gb|ACZ23006.1| flagellar motor switch protein [Sanguibacter keddieii DSM 10542]
Length = 315
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 7/302 (2%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
P P + + + + + ++ + V + +
Sbjct: 18 QRPAQPEAYD-FRRPMTLAREHGRAFEMAFETFARQWGTQLTSRLRVMVGVGLDGVEMVS 76
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
+ + + S+ + S + ++ + ++ +LG +L R L+
Sbjct: 77 YDEYVRRLPNHTTMVLCSIETTRSTAVLQVASETSMLWVDYVLGGPGLVREELP-RELTE 135
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E L ++ A L ++ + ++E V +T
Sbjct: 136 IETTLITDMLSGALADLRYAFVAVVPLDVRVKAIQY--NPQFVQAAPASEAVIVATFTLT 193
Query: 190 IENVASSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ ++ L+IP + LL + ++ D R + V++ R+
Sbjct: 194 VAERPTTATLMIPADVLLAPMRAGEGVVQRSKDELAEAAAASDRLHRTMSTVPVDVHVRM 253
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+DVV L +G+VI H + +G + G G+ +I D
Sbjct: 254 RPVTVHPRDVVDLTVGEVIHLNHPVSRPLDVVVDGIVLAHGVAGNNGRQLACKIVDSEGE 313
Query: 307 DQ 308
D+
Sbjct: 314 DR 315
>gi|119469993|ref|ZP_01612798.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
gi|119446703|gb|EAW27976.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
Length = 230
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 69/192 (35%), Gaps = 5/192 (2%)
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
T+ +L + E+++ + + I + + + + E
Sbjct: 4 TMQKLKAGEFTPTERRIVQMLLKIIFEDYKEAWAPVMDV--SFEYLDSEVNPAMANIVSP 61
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTY 236
E V + ++ ++ F + +P L + + Q+ +E+ +
Sbjct: 62 TEVVVISSFHIELDGGGGDFHIALPYSMLEPIRELLDAGVQSDTEDTDLRWSKALRDEIM 121
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ V++ T++ TL+ ++ LK G +IP + + ++GR N
Sbjct: 122 DVEVDMSTQLLEVDLTLQQIMELKAGDIIPVEMP--EHITVFVEELPTFRAKMGRSRDNV 179
Query: 297 TIRITDRINFDQ 308
++I+++I
Sbjct: 180 ALQISEKIKRPD 191
>gi|153011533|ref|YP_001372747.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
anthropi ATCC 49188]
gi|151563421|gb|ABS16918.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
anthropi ATCC 49188]
Length = 317
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 44/306 (14%), Positives = 107/306 (34%), Gaps = 6/306 (1%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
S + L R G GD ++ ++ F + K D+ +S
Sbjct: 15 SDVLAENLLRAAGLSGDD--LKSLAHVFKDASTHFCDR-LKHGCAAAFDVEAGQVESTDD 71
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+ + + + W S ++ LV +++E + GA +R +
Sbjct: 72 AAFADILDKAAIIAPLKAERWGSTLYLTADATLVFSVIEAMYGAQGHVGSVDEDRPFGML 131
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E+K++ +++ L+Q + D + + + +++T
Sbjct: 132 EQKISALLAGHLASSLDQVFAANG--QALFTAGECTDTAEFDRENFERSRLFACRIDVTA 189
Query: 191 ENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
L++P+ T + + ++ + + ++ I
Sbjct: 190 AGKTGQVHLLLPRSTHKPMQDAVAAFLRRPMNQTDPSWAKKMRQEVSRARIELEAFIQQG 249
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
TL + L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++
Sbjct: 250 SMTLDALSMLEIGQVLKLPVDAMKQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEED 309
Query: 310 SLKNFL 315
+ +
Sbjct: 310 FIDELV 315
>gi|226225727|ref|YP_002759833.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27]
gi|226088918|dbj|BAH37363.1| flagellar motor switch protein FliM [Gemmatimonas aurantiaca T-27]
Length = 331
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 97/301 (32%), Gaps = 8/301 (2%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
S + + K + ++ K ++ +++ S +
Sbjct: 25 ASAGLDVQVYDFRRPHRVSKERLRTLEAMYERLVKGFEAWLISRVRGQIEVRLQSVEQFS 84
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
F S ++ I +++ L G R+L+
Sbjct: 85 FGEFTLSLPMPCSSYIFDIAGTGQKGVIDVGPEFSTYIVDRLFGGEGT--GSALTRALTP 142
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E+ + +I+ +L + N+ F + + V N+ +
Sbjct: 143 IERMAVRNVADKITGLLQEIWQDHVAMDLNITGFE--SSPEILQVVNREDPVLVANVEVN 200
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTR 245
+V+S +L +P L K + + N +E + ++ V + R
Sbjct: 201 TGSVSSLLLLCLPFSVLDKFFTSNGQQRLALLNTNEQEREATRQRSEAALRATKVPLTAR 260
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + +++D+ + G VIP + ++ A +E + GRV N +RI D +
Sbjct: 261 LPDFQLSMRDLAQITEGSVIPTAIPKDARVLIRAGTQERFIGHAGRVNGNLAVRIVDALP 320
Query: 306 F 306
Sbjct: 321 S 321
>gi|83944184|ref|ZP_00956640.1| possible flagellar motor switch protein FliM [Sulfitobacter sp.
EE-36]
gi|83845051|gb|EAP82932.1| possible flagellar motor switch protein FliM [Sulfitobacter sp.
EE-36]
Length = 318
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/299 (11%), Positives = 102/299 (34%), Gaps = 4/299 (1%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
L+ + + +G + L + M + S S +I
Sbjct: 18 LIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEG 77
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + + + + +++T +E +LG + + + + +E +
Sbjct: 78 LPKPTFLAVGTGHPFVGEILVVMDQAVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGE 137
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
R + + A L + +S ++ L+ + + + +++T+ +
Sbjct: 138 RLASAVFAELERSLSVVGAANLELDRIETE--AEGAAIAKNTSLCARLRLSLTLAGNTGN 195
Query: 197 FVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
L+IP + L + + + + NV++D ++ L+
Sbjct: 196 LDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQK 255
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQKSLKN 313
+++ + G I F E A ++ +++ LG+ ++IT+++ + +
Sbjct: 256 IMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314
>gi|83955115|ref|ZP_00963771.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
gi|83840444|gb|EAP79617.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
Length = 318
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/299 (11%), Positives = 102/299 (34%), Gaps = 4/299 (1%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
L+ + + +G + L + M + S S +I
Sbjct: 18 LIDEIIRMSDFTFDRLPMLDIIGDRMVENLSVALPDLMRAMCEASLASLDYIPMGKVIEG 77
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + + + + +++T +E +LG + + + + +E +
Sbjct: 78 LPKPTFLAVGTGHPFVGEILVVMDQTVLMTAVELMLGGNAKNVDLDNTDPFTAIELGFGE 137
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
R + + A L + +S ++ L+ + + + +++T+ +
Sbjct: 138 RLASAVFAELERSLSVVGAANLELDRIETE--AEGAAIAKNTSLCARLRLSLTLAGNTGN 195
Query: 197 FVLIIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
L+IP + L + + + + NV++D ++ L+
Sbjct: 196 LDLVIPYDALEQILPDLGKVYFGDRMVSQDQWRGLIGAQIERANVDLDVVLSENVFPLQK 255
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQKSLKN 313
+++ + G I F E A ++ +++ LG+ ++IT+++ + +
Sbjct: 256 IMSWRPGDTIDFGIEEGRDATVTCADTPMFNVSLGKRNNGYVAVQITEKLEILEDHEDD 314
>gi|163784305|ref|ZP_02179215.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159880423|gb|EDP74017.1| Flagellar motor switch protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 263
Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 4/250 (1%)
Query: 60 ISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+S +F+ + ++ S+ N + + LV T++ L G +
Sbjct: 17 VSQNDIYITRFNDFMLKIPLPASYTIISMKPLKENSLLVLDSRLVFTIISVLFGGPPK-P 75
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ R + +E K+ I + +E +E
Sbjct: 76 FKVEGREFTKLEIKVINDFIKAVLETFESVWEQIYPIK--IEMKSIELNPNLARIVSPSE 133
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
V + +++ I+ + PQ L S + + K +++
Sbjct: 134 KVIVVELSIDIDGYEAPMFFCFPQNMFLPIKDFIYSEVT-QFEEDVAWKNYLLEKVHKIK 192
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V + + + +KD++ K G + T + K + +LG+ + + ++
Sbjct: 193 VKLWVELFKETYKVKDILEWKEGTKLETKISTDTLLKVYIEDKPKFLGKLGKKKEKFAVK 252
Query: 300 ITDRINFDQK 309
I D ++
Sbjct: 253 IKDIYLGEKN 262
>gi|1870714|gb|AAB48838.1| FliM [Sinorhizobium meliloti]
Length = 258
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/252 (27%), Positives = 125/252 (49%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S N L+AR+TG LGD K I + + L ++ + LP + + + DV I+Y
Sbjct: 4 STASNVHAFDRRLIARMTGALGDDKVIGRTALELAQVFDELLPGVLQSETGCDVTIAYAG 63
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
++G + +I + + + SL +W ++F +GC ++I L+E LLG + +I +
Sbjct: 64 FRTGLRNELIAALGDGVLLGDLSLRNWCADFQVGCDTPVLIALVEALLGPNPTSIEEPPP 123
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
RSLS +E +A ++I+ VL ++ P + Y+ K L + F +I
Sbjct: 124 RSLSKIEIDVALPVFSRIAEVLRTAVNAPGGFEPVVGRPYNSAERAKPDPVLQDVFAASI 183
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+M + + V S+F +I+PQ TLLKT ++S + N + + + + V ++
Sbjct: 184 DMTIGLGPVLSTFSVIVPQSTLLKTRVVSRKGAGEDRNAKTEWTEQLEEQVRRSAVALEA 243
Query: 245 RINLKKTTLKDV 256
RI L+ TL +
Sbjct: 244 RIRLESLTLDTL 255
>gi|296447445|ref|ZP_06889370.1| surface presentation of antigens (SPOA) protein [Methylosinus
trichosporium OB3b]
gi|296255065|gb|EFH02167.1| surface presentation of antigens (SPOA) protein [Methylosinus
trichosporium OB3b]
Length = 339
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 107/301 (35%), Gaps = 3/301 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ RL G + ++ ++ + ++ S + + + +
Sbjct: 39 AVRERLLAGGGLSPDRLPMLRVALDEAALGFEEMLRKLGFVSPQVAVESVAATRAAEAQN 98
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ + + + + +G V ++E L GA R+L++VE +LA
Sbjct: 99 ALDALAITATYGGAEPDARVTLGAERKFVFAMVEGLFGADGSEPFYEEERALTSVEIRLA 158
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ + +++ L ++T ++ L+ + + +T S
Sbjct: 159 RLVLDRLAKALQISFASTAGAALALDPVEPK--PEPAGAARRSGSALICRFRLTAFGAES 216
Query: 196 SFVLIIPQETLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
++ PQ L + ++ + V++ + + TL
Sbjct: 217 EALVTFPQGVLDPLREALAADPATTIQSADPLWAQRMKDRITATEVSLTAVMERRDLTLG 276
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
DV ++GQ++ L G+ ++ CE+G+ YTIRI D ++ +Q+ + +
Sbjct: 277 DVARFEVGQIVELPVSPTGLIALECEGQTLFWCEIGQKDGAYTIRIADFVDKEQEFIDDM 336
Query: 315 L 315
L
Sbjct: 337 L 337
>gi|110632665|ref|YP_672873.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
BNC1]
gi|110283649|gb|ABG61708.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
BNC1]
Length = 311
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 54/305 (17%), Positives = 102/305 (33%), Gaps = 6/305 (1%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
P+ +++ RL G GD + + + + + L IF+ K + + + + +
Sbjct: 10 PMRDLVVERLVGATGDLRQVTEAARTTAMRSLPVLQDIFQAKFSAPLVLDIAGVEVVRLA 69
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ + + + L+ LLG + P +R S +E
Sbjct: 70 ELKPEPDSFDALVVIPATDSRDALTMRLDAQALSLLVSILLGGDPDIPPSPLDRPPSRIE 129
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL-KKNTNRLSNEFVTTINMNMTI 190
+A+ + LN S + L + + + I ++
Sbjct: 130 LDVARLVFGAFAQALNGTGSRSLGL--RLPAPQPLAGPGDFKRFLVRDGPGIRIAFSLGA 187
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
V+ +P +LK + F + + V + I L K
Sbjct: 188 GPVSGILTAWLPHRIILKAR---APAAEDDSPAHTQWKQRFGEEVRRSTVQVTATIPLTK 244
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L + LK GQV+ LS + ++ CE GR+G+NYT+RI + Q
Sbjct: 245 LPLGALANLKPGQVLELQENAPRETRLSVRNRPVFVCEFGRLGQNYTVRIRQPFDDRQAV 304
Query: 311 LKNFL 315
L L
Sbjct: 305 LDGLL 309
>gi|94968664|ref|YP_590712.1| flagellar motor switch protein FliM [Candidatus Koribacter
versatilis Ellin345]
gi|94550714|gb|ABF40638.1| flagellar motor switch protein FliM [Candidatus Koribacter
versatilis Ellin345]
Length = 329
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 37/283 (13%), Positives = 93/283 (32%), Gaps = 10/283 (3%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + SSL + + L + + + + S + + ++ E +S +
Sbjct: 48 REQVRSISSLHEGFARNLTHSLGAYLRVPFEANLVSVEQLTYRELLGRLPEVAYYSTFRI 107
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + +L +++ LLG Q+ R ++ +E+++ + + L
Sbjct: 108 GTADNIGAMEMDLSLAFPMIDILLGGQGGHDEQV--REITEIEEQILEVVAKVVCKELET 165
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---ET 205
E L++ E + + + + S L
Sbjct: 166 AWQP-LGMEFAFEARQQAAQLQR--LMPPTEKILALCFELEMPGCRGSLNLAFSAVVSNA 222
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
LL+ + +S D RK + + +++++ L+ G ++
Sbjct: 223 LLRKLSKDWGYRRQSRESDGD--GKLHRKLLGCPFPVSLGLVDASVRVRELLQLRAGDIL 280
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
P ++ LS G+ + R G +I RI+ +
Sbjct: 281 PLKRSAESAIELSVGGRASFRARPVRSGNWRAAQILGRISTAK 323
>gi|56551539|ref|YP_162378.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241761177|ref|ZP_04759266.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752861|ref|YP_003225754.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|56543113|gb|AAV89267.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374796|gb|EER64257.1| flagellar motor switch protein FliM [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552224|gb|ACV75170.1| surface presentation of antigens (SPOA) protein [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 332
Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 8/285 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + L I + ++ F E S
Sbjct: 54 PIVRMAGLERIAEKLARRLRLIIEPFARARTQVTVDGVDIHHFEKWRRDLPEFVSISLYR 113
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L+ I + L++ G + P + + E++L R I+ +
Sbjct: 114 LAPLKGGAMIVMDPQFITGLVDAFYGGTGIVTPSRA-KEFTPAEERLLVRLSDTIADSVV 172
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETL 206
+ S + T ++E V + A+ ++ P+ TL
Sbjct: 173 ESWSDVVQLQSQF--LSRETNGAYVTMIRNDEAVVVQRFTIVPGNGRAARISIVYPRATL 230
Query: 207 LKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + E+ + + I T + + T+ + LK+G+VI
Sbjct: 231 RPFEMHLDTKVHDDAGPADENWTKRMRLAASAIPIPIKTILARPQITMGQLKNLKVGEVI 290
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
P L A K+I +G + I +++ + +
Sbjct: 291 PIEMP--EQLPLIAGTKKIAYGSIGDRDGKTALLI-EKLEEEPEI 332
>gi|152965629|ref|YP_001361413.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
SRS30216]
gi|151360146|gb|ABS03149.1| flagellar motor switch protein FliM [Kineococcus radiotolerans
SRS30216]
Length = 314
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/284 (12%), Positives = 82/284 (28%), Gaps = 6/284 (2%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
+ ++ + + + + V + Q + S
Sbjct: 27 DFRRPTKLSRQHARVLEITYEGFCRQWATLLSSTLRTTVQVELDGIQQYSYDEYAASLPM 86
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
V + + V++ +E +LG + R L+ +E LA+ +
Sbjct: 87 PTVMAVFDPEPLVGAAVLHMDMAFVLSCIERMLGGTG--HNAQPERQLTDIEAVLARGMV 144
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ L + T + P L + + + + ++ ++ VA + L
Sbjct: 145 ERTLVELASSLVTVTDLKPKLTAID--QNPAFAQAAAATDVMIVSSFHLEVDGVAGTATL 202
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
+P + L + E D + V + R+ + +++
Sbjct: 203 AMPLDPLSTALTAAELRVASPEELRIRRLMRDRLDDHLEHIPVEVSVRMKAAQMRPDEIL 262
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
L G V+ HR + ++ + S G G I
Sbjct: 263 GLVPGDVLRLPHRADEPLEVVSSDAHVASAVAGSRGAKLACLIV 306
>gi|313905139|ref|ZP_07838508.1| surface presentation of antigens (SPOA) protein [Eubacterium
cellulosolvens 6]
gi|313470042|gb|EFR65375.1| surface presentation of antigens (SPOA) protein [Eubacterium
cellulosolvens 6]
Length = 368
Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 9/274 (3%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
K K+ S+ Y + L DI+ + ++ ++SF EN +
Sbjct: 52 KEKLKLLRSIFENYARILTSQVNGIFRTMTDITVMELRESRYYEYVNSFHENDCMTIIDT 111
Query: 89 -----SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
+S I + L++TL+ ++LG + I N S VE L KR + I
Sbjct: 112 VMPEKGKFSVPMMIYVTPGLILTLMSHMLGGGEQVISTEENYRYSDVEMSLYKRILEYII 171
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS-FVLIIP 202
L S + +E V +++N+ + +AS + IP
Sbjct: 172 HALGDGFSNYLTVDFR--PQKVEENPSMIQEVGLDETVVLVHLNVDVTGIASEKIRICIP 229
Query: 203 QETLLKTTLISLSSQNKSEN-QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L + + ++ + + + + + ++ + T++D+ L++
Sbjct: 230 GTLLEQIFRTIDNRKHIARGFTYSNNSEVIMSHLKETKFPLTAQLGTVRLTMEDLYRLQV 289
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
G VI + L + + +G KN
Sbjct: 290 GDVIDMNKSKDATLSLFVGKQPWFKGTMGVHHKN 323
>gi|218672165|ref|ZP_03521834.1| flagellar C-ring motor switch protein [Rhizobium etli GR56]
Length = 209
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 65/209 (31%), Positives = 113/209 (54%)
Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
+E+LLGA+ +TI + +R LS +E LA +I+ VL ++ P+L + D
Sbjct: 1 MEHLLGATADTIEEPADRLLSIIELDLAVMVFDKIAKVLRSAVNAPGGFEPSLSAPHAHD 60
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
+ +EF INM++T+ + S F LI+PQ LLKT + + ++ S +
Sbjct: 61 TRPRPAEDKPDEFAAAINMSITLAGIVSEFSLIVPQTALLKTQVTPPKPKRQAGGASPEW 120
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ + + +V ++ RI L+ TL+ + L +G VIPF + +SAN KE+Y C
Sbjct: 121 TEQLGDQVRRSHVTLEARIRLQDLTLRTISKLMVGDVIPFRDTGEVRVEVSANSKELYIC 180
Query: 288 ELGRVGKNYTIRITDRINFDQKSLKNFLH 316
E GR G+NY +R+ D +N D + +++ ++
Sbjct: 181 EFGRSGENYMVRVKDTMNSDDELIRHLMN 209
>gi|195952553|ref|YP_002120843.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
gi|195932165|gb|ACG56865.1| flagellar motor switch protein FliM [Hydrogenobaculum sp. Y04AAS1]
Length = 321
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/275 (11%), Positives = 88/275 (32%), Gaps = 6/275 (2%)
Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
+ + + + +I +F +I + +++
Sbjct: 50 LEIILEKWSRLSRVKLSSLIVAINNIYKAETSLIRFEDLITKLPVPSCINMFNITGLKGT 109
Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
F+ ++ +++ + G S + ++ + + +E K+ K+ + + + + ++
Sbjct: 110 HFLILDPRMIYSIVSVIFGGSAKPY-RIEGKEFTKLELKIIKKVVDLLLSAFQESWNSI- 167
Query: 155 ESSPNLEDFYDIDYLKK-NTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
S + E ++N+ I+ + L I +L
Sbjct: 168 -LSGEVMYLETEVNPALIAPMNSKKEMFIQAHINIEIDGIDYPIFLAIQNSSLEPVVDRL 226
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ S+ D I+ L V++ I+ +KD++ ++G I
Sbjct: 227 RNVSEVSDYVDYDSIN--KNLIKNLTVSLSVAIDGGDFMVKDILEWEVGDTITLKTSANR 284
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
++ G LGR ++I ++ +
Sbjct: 285 PVKVNIEGMLKMYGVLGRSNSKKAVKILKLLDNKE 319
>gi|239834451|ref|ZP_04682779.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
intermedium LMG 3301]
gi|239822514|gb|EEQ94083.1| surface presentation of antigens (SPOA) protein [Ochrobactrum
intermedium LMG 3301]
Length = 321
Score = 155 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 104/301 (34%), Gaps = 10/301 (3%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
R G GD ++ ++ F + K DI +S + +
Sbjct: 24 RAAGLSGDD--LKSLAHVFKDASTHFCDR-LKHGCAAAFDIDAGQVESTDEAAFADILDK 80
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ----LYNRSLSTVEKKLA 135
+ + W ++ LV +++E + GA +R +E+K++
Sbjct: 81 AAIIAPLKAERWGCTLYLTADATLVFSVIEAMFGAQGNIGGNVGSVDEDRPFGMLEQKIS 140
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
++ L+Q + ++ ID + + + +++T
Sbjct: 141 ALLAGHLAKSLDQVFAGNGQT--LFAAGECIDTAEFDRENFERSRLFACRIDVTAAGKTG 198
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
L++P+ T + + + + + ++ I TL
Sbjct: 199 RVHLLLPRSTHKPMQDAVAAFLRRPMNQADPSWAKKMRHEVSRARIELEAFIQQGSMTLD 258
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ L+IGQV+ L A ++++ C LG+ G ++T+++ D +N ++ +
Sbjct: 259 ALSMLEIGQVLKLPADAMEQVRLRAGDQQLFKCTLGKSGIHFTVKVGDPVNQEEDFIDEL 318
Query: 315 L 315
+
Sbjct: 319 V 319
>gi|220913720|ref|YP_002489029.1| surface presentation of antigens (SPOA) protein [Arthrobacter
chlorophenolicus A6]
gi|219860598|gb|ACL40940.1| surface presentation of antigens (SPOA) protein [Arthrobacter
chlorophenolicus A6]
Length = 298
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 81/278 (29%), Gaps = 9/278 (3%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
+ ++ + + K+ + + + S
Sbjct: 19 DFRRPTTLPRQHSRVLEVAFETFARQWGTQLTAKVRVKSSATLEQLSMQSYDEYAASLPS 78
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ S + + + +LG S + + R + +E L +R +
Sbjct: 79 VTSMVLCRIDGSESRLVLQFPATAALAWISRMLGGSGD--ADVPERKFTQIEHALVRRMV 136
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
L + + + ++ + E + ++ + + S+ L
Sbjct: 137 EDSLEDLKYSLGSLLAAPLAMDVVQY--NSQFAQAAAPGELMIVATFSVQVGELPSAATL 194
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
IP + LL + D + Q+ V++ ++ T ++ L
Sbjct: 195 AIPADVLLPGL-----GAVNPTAPTADAGALVRAQVAQVPVDVAVQLARTSVTPAQILGL 249
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+G V+P H E + ++ NG + + R G
Sbjct: 250 AVGDVLPLPHPENSPFDVTVNGTRLATAAPARNGSRAA 287
>gi|300024614|ref|YP_003757225.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526435|gb|ADJ24904.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 322
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/307 (11%), Positives = 96/307 (31%), Gaps = 13/307 (4%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L R ++ ++ + + + V + +
Sbjct: 16 LERALSAGQNRPDRLPGLQTIFGQLPRVMVEELGSVSSFPVKARLLDLSASTIGE-SCNL 74
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
N W + + L +E+ LG L R L+ + + +
Sbjct: 75 PPNTYAGVVRAERWRNWLYFISDPTLTALFVESALGCEGLPPTGLTERRLTKTDANILRV 134
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+++ L+ S + +L D +D ++ ++ V + + +
Sbjct: 135 MFRRVTRALSHAFSILVDVQLDLGD--VVDKIELEPQLSTSSPVISARLAIEYFGQTGIL 192
Query: 198 VLIIPQETLLKTTLISL----------SSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
++IPQ + + + + + + + + ++ +
Sbjct: 193 TIVIPQAAIEPVRDLLAVASAGEAVGAAPPSARAYDDTSWSKQLSEEIARAFIGLNGILE 252
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ +L +V +G V+ L A+ ++ CELG+ T+RI D + +
Sbjct: 253 ERPISLGEVQRFAVGSVVELTSTSLARVRLDADEIPLFWCELGKRDGTLTLRIEDDFDQN 312
Query: 308 QKSLKNF 314
++++ F
Sbjct: 313 KETIDEF 319
>gi|254446496|ref|ZP_05059972.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae
bacterium DG1235]
gi|198260804|gb|EDY85112.1| flagellar motor switch protein FliM, putative [Verrucomicrobiae
bacterium DG1235]
Length = 338
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/273 (10%), Positives = 89/273 (32%), Gaps = 5/273 (1%)
Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
+ ++L + L+ + + + +S + +
Sbjct: 67 RIRHEEFIRYLAARLSIFLRLEYSLKMSRLSTLTYSKFTETIPNPAHVVLFKIEQLFGVG 126
Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
I + L +T+++ +LG R L+ +E L + + + + QE
Sbjct: 127 VIDINPRLALTMVDRMLGGKG--HSVQGERYLTEIETNLVDDVVGIVLEEWCRQWKSEQE 184
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
+ + ++ + ++M + + + + + +P TL
Sbjct: 185 LDTTI--IGHESNGRFLETSPADAIMLVLSMEAGVGDCSETIQIGLPYYTLEPIIKRMHE 242
Query: 216 SQNKSENQS-EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ K + Q+++ + + + T K+V+ L+ G VI F
Sbjct: 243 AKEKDLGMDLTQAESSWQSSFNQIDIPVQAEWDGQTLTTKEVMNLRPGDVIRFPKTVLKD 302
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ + ++ E+G +++ ++ +
Sbjct: 303 TRVRLSNSIKFTGEVGLENDRVAVKLDKKLEEE 335
>gi|319409195|emb|CBI82839.1| Flagellar motor switch protein FliM [Bartonella schoenbuchensis R1]
Length = 335
Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 47/303 (15%), Positives = 108/303 (35%), Gaps = 3/303 (0%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
+L + G + L L+ S + K II
Sbjct: 34 DVLAQHILRAAGLSSDDLMSFQYVFRDAASSLCAQLGHYTSLEFSTDVQSLDTLKSDKII 93
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + S S W + LV + E GA+ + R S E K+
Sbjct: 94 QTIGTDTLLIYFSSSLWGDDVIFVLDATLVDLITEAFFGAAEPKLINRNGRPFSPTEYKI 153
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
++ ++ ++ T S + + N + + + + +
Sbjct: 154 SEYFGKLLANTMDGIFGTGDGSLLLFKQILKAQ--EFNAETFHQSQMFSCTLGVKCNEIE 211
Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
++ +++P+ + + +++ ++ + +V+I+ I TL
Sbjct: 212 TNVNILMPRSCHRPIQEAVTRALRAPAKHTDPLWAKRLKQEVSRAHVSIEAFIQQGSMTL 271
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
++ L++GQV+ L + K +Y C LG++G N++IR+TD I+ +++ +
Sbjct: 272 DELSKLQVGQVLSLPANAVKQIKLRSGKKSLYKCSLGKMGTNFSIRVTDPIDEEKEMIDE 331
Query: 314 FLH 316
+H
Sbjct: 332 LVH 334
>gi|24496480|gb|AAN60221.1| FliM [Fervidobacterium sp. YNP]
Length = 165
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 5/164 (3%)
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
+ P +E + S+E V I ++ V L P +
Sbjct: 1 AWMSVHPFIPVVE--STETNPQFVQIVPSSEMVLAITFFVSFGKVEGYMSLCWPSSVIEP 58
Query: 209 TTLIS---LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ K + +E+ I+ + +++ I TL +++TL++G VI
Sbjct: 59 IGEKLTTQSWFKVKQKEITEEHIEKLKENLQRTKIDVIAIIGETVLTLGEILTLEVGDVI 118
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ NG+ + + G+ NY ++IT+ I ++
Sbjct: 119 RLKEHYDEPIRVEVNGRTKFLGKPGQYKGNYAVKITEVIEEPKE 162
>gi|312115267|ref|YP_004012863.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC
17100]
gi|311220396|gb|ADP71764.1| flagellar motor switch protein FliM [Rhodomicrobium vannielii ATCC
17100]
Length = 314
Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/309 (15%), Positives = 100/309 (32%), Gaps = 6/309 (1%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
M QS T ++ +L + +S+ F+E V
Sbjct: 1 MASQSPDAATGAG-VEIIDKLKELSKLSLDRLPVLTSIFEGMALSCCDEFREYCSPAVTA 59
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
SG ++ + + W + IG LV ++++ + G +P
Sbjct: 60 FVNQIVSGDSWDLLEACSDGVS-VIFYCREWDARIVIGVERRLVFSIVDAMYGGDGSELP 118
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
RS + +E K+ + + + T E + E L + N
Sbjct: 119 YEDKRSFTALETKIGRVICEFGARSFTESFRTVGEITLAPERTETA--LDFASLGQHNMM 176
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS-ENQSEDLIDPFARKTYQLN 239
+ + + +V ++IPQ LL + + +++ +
Sbjct: 177 LIHAQILFQVLDVGGVMFVLIPQNVLLPVRQKLERQRAPMLSSVDPRWTSLLSQRVSRAE 236
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
V +D I K+ L + L++G+ + E+ G ++ LGR YT+
Sbjct: 237 VTMDAVILGKEIELGQMFKLEVGKTLELEGTERN-IFFEYEGDRLFRGCLGRERGTYTVT 295
Query: 300 ITDRINFDQ 308
I + ++
Sbjct: 296 IDEALSDID 304
>gi|225872620|ref|YP_002754077.1| putative flagellar motor switch protein FliM [Acidobacterium
capsulatum ATCC 51196]
gi|225793214|gb|ACO33304.1| putative flagellar motor switch protein FliM [Acidobacterium
capsulatum ATCC 51196]
Length = 316
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 93/304 (30%), Gaps = 12/304 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
N P + + + + SSL L+ + L + + I
Sbjct: 25 QPEADANVRPYN------YSRAGQISREQLRSISSLNDLFARNLGINLGAWLGMQCRIQL 78
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
S + F + + + L + + V ++++ LLG +
Sbjct: 79 VSAEQIPFEEFVMRGADLSFIASLRLEPLRAVAILQMELAPVPSMIDALLGGIGQPGEV- 137
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
R L+++E+ + + I L+ + S E + E
Sbjct: 138 --RELTSIEEAIVAHVVELICRELSSAWQSI-GLSFYFESRQM--QTQMARLLPIKERAL 192
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
++ + + + + + +P + + SE+ +++V
Sbjct: 193 CLSFEIRLPSASGLLHIALPAVVSNTVLRSLRGDLHPQKEHSEETRAKMRGLVKKVSVGT 252
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ + ++++ L+ GQV+ F KT L G ++ R G+ I
Sbjct: 253 ALQLAPARIPMRELEGLEAGQVVVFPVTAKTRPELLVAGVPLFQAVPVRSGERRAAHIES 312
Query: 303 RINF 306
Sbjct: 313 LPPE 316
>gi|23007978|ref|ZP_00049614.1| COG1868: Flagellar motor switch protein [Magnetospirillum
magnetotacticum MS-1]
Length = 269
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 35/235 (14%), Positives = 71/235 (30%), Gaps = 3/235 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ AR+ G + + K S SG+F +
Sbjct: 37 DIRARILEAGGLSLDRLPMLHVVFDRLATACSDAAKHLAASSTFYSLNGIASGRFGEFLD 96
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ N V W + +G + + T++E L G+ P R+ S +E ++A
Sbjct: 97 AYDANAVVGIFHAPEWDGHILVGLDRDFLYTMVEVLFGSDGSEPPVEDERNFSAIELRIA 156
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ Q+ L ++ LE ++ + + N
Sbjct: 157 QMVFEQVGKALESSFGLVSQTPFRLERMET--RMEFAVIGRRSNKAVQAKFLLQALNRGG 214
Query: 196 SFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
L+IPQ L +S + + A + + NV + + +
Sbjct: 215 EMFLVIPQTVLNPLRPALSKVLTGESAARDPHWAEQIAAEVQKTNVRLKAVLEER 269
>gi|306841070|ref|ZP_07473793.1| surface presentation of antigen protein [Brucella sp. BO2]
gi|306288908|gb|EFM60211.1| surface presentation of antigen protein [Brucella sp. BO2]
Length = 253
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 97/251 (38%), Gaps = 2/251 (0%)
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +R
Sbjct: 2 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLTLDAVLVFSVIEAMFGAQGNLGPVDADR 61
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T P ID + + + T +
Sbjct: 62 PFGMVEQKIANLLAGHLAGALDRVFNTGSS-QPLFAPGDCIDTADFDRDNFELSRLFTCH 120
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ +T L++P+ T + + + ++ + + ++
Sbjct: 121 IAVTAAGKTGQMHLLLPRSTHKPMQDAVAAFLRRPMDQADPAWAKKLRQEVSRARIELEA 180
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +L + L+IGQV+ L A ++++ C LG+ G ++T+++ D +
Sbjct: 181 FMQQGSMSLDALSRLEIGQVLKLPVDAMEQVRLRAGNQQLFKCTLGKSGIHFTVKVGDPV 240
Query: 305 NFDQKSLKNFL 315
N ++ + +
Sbjct: 241 NQEEDLIDELV 251
>gi|307293811|ref|ZP_07573655.1| surface presentation of antigens (SPOA) protein [Sphingobium
chlorophenolicum L-1]
gi|306879962|gb|EFN11179.1| surface presentation of antigens (SPOA) protein [Sphingobium
chlorophenolicum L-1]
Length = 299
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/284 (11%), Positives = 79/284 (27%), Gaps = 9/284 (3%)
Query: 24 KLGDKKTIEKI--SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
G+ + + LG + L + + + ++ ++ +F ++
Sbjct: 10 GRGESQAPLMLSGLDRLGEKLGRRLRALIEPIAGVRPHVAVHDARALEFGAWNAEVPDSS 69
Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
L+ + ++ TL++ G + E +L R
Sbjct: 70 SIGVYRLAPLKGQVLLRLDATMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISDA 128
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200
A L +C S L + E + ++I + L+
Sbjct: 129 FMARLVECWSDMLTLDAGLIVRET--GVGFAAAAQPGEQMVLQRFMLSISRDAEWPIDLL 186
Query: 201 IPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
P L + + + + A + + + T + +L +++ L
Sbjct: 187 FPLSALRNVEGLMGARIPIDDERADPIWQARIAARMRDIRLPARTVLARPDLSLAELMQL 246
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
K G VIP L + + +G +I
Sbjct: 247 KAGDVIPV--TINRSLPLIVGDRIVAHGTIGEQDGRAAFQIEKI 288
>gi|229058412|ref|ZP_04196796.1| Flagellar motor switch protein [Bacillus cereus AH603]
gi|228719921|gb|EEL71511.1| Flagellar motor switch protein [Bacillus cereus AH603]
Length = 328
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/281 (13%), Positives = 91/281 (32%), Gaps = 8/281 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P ++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTPSDIISLLNVNMKTEFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTIGEIEKIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
IP + +GK ++C +G+ G + I
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328
>gi|94495436|ref|ZP_01302016.1| flagellar switch protein [Sphingomonas sp. SKA58]
gi|94424824|gb|EAT09845.1| flagellar switch protein [Sphingomonas sp. SKA58]
Length = 295
Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/290 (10%), Positives = 76/290 (26%), Gaps = 7/290 (2%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
+ LG + + + + + ++ + F+
Sbjct: 10 FGRGELQAPVMLSGLDRLGDKLGRRIRALIEPIAGVRPNVQAQDARVLDFAAWSAQVPSF 69
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
S + + ++ TL++ G + + E +L R
Sbjct: 70 TSISLYRILPLKGQMLLRLDAGMISTLVDCFYGGIGNRPLPVRG-EFTPTEDRLIARISE 128
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVL 199
+ + + + +L + + + +T+ + L
Sbjct: 129 TLMVRMVESWADVLPLDASL--ILRETGVGYAAAAQPADQMVLQRFVVTLTRDQEWPIDL 186
Query: 200 IIPQETLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+ P L ++ + + AR+ + + T + +L D++
Sbjct: 187 LFPLSALRAVEALTGAKVPADDDQADPVWQGRIARRMRDIRLPARTVLARPNLSLADLME 246
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
LK+G VIP L + + +G +I
Sbjct: 247 LKVGDVIPV--TIGRALPLIVGNRIVAHGTIGEQDGRAAFQIEKLAQETD 294
>gi|294013062|ref|YP_003546522.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S]
gi|292676392|dbj|BAI97910.1| flagellar motor switch protein FliM [Sphingobium japonicum UT26S]
Length = 294
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/283 (12%), Positives = 80/283 (28%), Gaps = 9/283 (3%)
Query: 24 KLGDKKTIEKI--SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
G+ + + LG + L + + + ++ +F H +
Sbjct: 10 GRGESQAPLMLSGLDRLGEKLGRRLRALIEPIAGARPHVVAQDARALEFGAWAHEVPGSA 69
Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
L+ + ++ TL++ G + E +L R
Sbjct: 70 SIGVYRLAPLKGQVLLRLDAEMISTLVDCFYGGIGNRALPPRG-EFTPTEDRLIARISEA 128
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLI 200
A L +C S L + E + ++I + L+
Sbjct: 129 FIARLVECWSDMLALEAGLIVRET--GIGFAAAAQPGEQMVLQRFLISISRDAEWPIDLL 186
Query: 201 IPQETLLKTTLISLSSQNKSENQ-SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
P +L + + + + A++ ++ + T + +L +++ L
Sbjct: 187 FPLSSLRAVEPLMGNRIPVDDERADPVWQARIAQRMREIRLPARTVLARPDLSLAELMQL 246
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
K G +IP L + + +G +I
Sbjct: 247 KAGDIIPV--TINRSLPLIVGDRIVAHGSIGEQDGRAAFQIEK 287
>gi|300117313|ref|ZP_07055103.1| flagellar motor switch protein FliM [Bacillus cereus SJ1]
gi|298725148|gb|EFI65800.1| flagellar motor switch protein FliM [Bacillus cereus SJ1]
Length = 328
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +D+ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFSLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|229017049|ref|ZP_04173968.1| Flagellar motor switch protein [Bacillus cereus AH1273]
gi|229023230|ref|ZP_04179740.1| Flagellar motor switch protein [Bacillus cereus AH1272]
gi|228738024|gb|EEL88510.1| Flagellar motor switch protein [Bacillus cereus AH1272]
gi|228744222|gb|EEL94305.1| Flagellar motor switch protein [Bacillus cereus AH1273]
Length = 328
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 8/281 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + F +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTFSARMRIPIELEPSAVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 QQSFESVVAIKPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
IP + +GK ++C +G+ G + I
Sbjct: 288 IPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328
>gi|54307255|ref|YP_128275.1| hypothetical protein PBPRA0018 [Photobacterium profundum SS9]
gi|46911675|emb|CAG18473.1| Hypothetical protein PBPRA0018 [Photobacterium profundum SS9]
Length = 296
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 90/298 (30%), Gaps = 15/298 (5%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
G ++ I ++ +++ + F + V+ S+ +
Sbjct: 14 EVRDFDLASPEHRIGA------LQAIIDNVCKQFERSARQSFHHLLRHPVEFSFDQQDTL 67
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K + K+ ++ + ++S + + L+ +++ N +S
Sbjct: 68 KLQDYLQQLKKPCLYREFTVSPHDLHGTVSIDGELLFFMVDLFF--GGNGNNIRRNNDMS 125
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E +L +R + +L + + L+ +N+ +
Sbjct: 126 DTELRLVERFFNLALEQFAHGWHSITSWHNHLT---EKNTLRLGNPMQNNQLYQVCRFTI 182
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ F + +P L + +L K Q + + T +
Sbjct: 183 DVCGHKGWFEIALPFAGLDFLRDQ--QCKAADIETDPELQAKIQTKICQTPMRLTTTLCE 240
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ L V+ LK G +IP + + A +++ + + ++I I
Sbjct: 241 RSLALGKVMDLKTGDIIPVELP--SEVTVRAGKTSLFTARIAEHNASLVLQIQSIIKQ 296
>gi|229011056|ref|ZP_04168250.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
gi|228750228|gb|EEM00060.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
Length = 328
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/281 (13%), Positives = 94/281 (33%), Gaps = 8/281 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + L R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFLMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 QQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
IP + +GK ++C +G+ G + I
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328
>gi|254517014|ref|ZP_05129072.1| Surface presentation of antigens protein [gamma proteobacterium
NOR5-3]
gi|219674519|gb|EED30887.1| Surface presentation of antigens protein [gamma proteobacterium
NOR5-3]
Length = 327
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 40/303 (13%), Positives = 98/303 (32%), Gaps = 10/303 (3%)
Query: 4 QSIHKNTSPLHPI---LLARLTGKLGDKKTIEK--ISSSLGYLYKKFLPKIFKEKMDLDV 58
+S+ TS R ++ + + L + L + ++
Sbjct: 17 ESVDDGTSAADAADDGQFRRFDFAAREQSLLREFTALGPLIERQAEMLGVALESGFSIEF 76
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+ + + + + S + + + +SLS + F L+ ++ G
Sbjct: 77 TVLAQTPELLSVADAVASLERSVAVTNSSLSPLAGPVFAIAPAELLSFVVNAYFGGGSAA 136
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
SL+ E +LA+R + ++Q + + + S+
Sbjct: 137 PSDSSRSSLTPTELRLAERIAEFQLSSISQAWTDKLALEAGE--LTTLGVPDRLEMLPSS 194
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS-EDLIDPFARKTYQ 237
+ + I +++ +S L++P L L + K E + F R+
Sbjct: 195 DMLLRIAFSLSAGEFSSQISLMLPFAALEPYRERFLPPRKKDEVSDGKSWEPFFRRELPG 254
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + + + + L D++ L+ G VIP L+ + + G
Sbjct: 255 IELEVAGVLATQSIALADLLQLQAGMVIPIKPP--EEVRLNIDNVTLAEGRYGSFDGVKA 312
Query: 298 IRI 300
+++
Sbjct: 313 VQL 315
>gi|218508217|ref|ZP_03506095.1| flagellar C-ring motor switch protein [Rhizobium etli Brasil 5]
Length = 188
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 97/187 (51%)
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+E LA +I+ VL ++ P+L + D + +EF INM++T
Sbjct: 2 IELDLAVMVFDKIANVLRSAVNAPGGFEPSLSAPHAPDARPRPPEDKPDEFAAAINMSLT 61
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ + S F LI+PQ LLKT + + + ++ S + + + + +V ++ RI L+
Sbjct: 62 LAGIVSEFSLIVPQTALLKTKVTAPKPKRQAAGASPEWTEQLGDQVRRSHVTLEARIRLQ 121
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
TL+ + L +G VIPF +SAN KE+Y CE GR G+NY +R+ D +N D +
Sbjct: 122 DLTLRTISKLMVGDVIPFRDSGDVRVEVSANSKELYVCEFGRSGENYMVRVKDTMNSDDE 181
Query: 310 SLKNFLH 316
+++ ++
Sbjct: 182 LIRHLMN 188
>gi|255026111|ref|ZP_05298097.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J2-003]
Length = 300
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 18 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 77
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 78 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 136
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 137 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 194
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 195 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 254
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 255 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 288
>gi|152975177|ref|YP_001374694.1| flagellar motor switch protein FliM [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023929|gb|ABS21699.1| flagellar motor switch protein FliM [Bacillus cytotoxicus NVH
391-98]
Length = 328
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 90/273 (32%), Gaps = 8/273 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIAASFGKQTSQSLAARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I +I + E LG + R L+ E + + L
Sbjct: 111 LGLPELGEIVIEMDLAFIIYIHECWLGGDSKR-DFSIRRPLTAFEFLTLDNVFSILCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+N+ E ++ + IP ++
Sbjct: 170 EQSFESIVAIQPKFVTTETDPN--ALKITTASDIISLLNVNLKTEYWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + + K +Q+ I + +K T+ ++ ++ G +
Sbjct: 228 EDIMDKLTSENIVEHSSDKRKKYTSEVEAKVHQVYKPIHIALGEQKMTIGELEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
IP + +GK ++C +G+
Sbjct: 288 IPLHTKVTDQLCGYVDGKHKFNCFIGKDKTRKA 320
>gi|206974807|ref|ZP_03235722.1| putative flagellar motor switch protein FliM [Bacillus cereus
H3081.97]
gi|229195975|ref|ZP_04322728.1| Flagellar motor switch protein [Bacillus cereus m1293]
gi|206746826|gb|EDZ58218.1| putative flagellar motor switch protein FliM [Bacillus cereus
H3081.97]
gi|228587534|gb|EEK45599.1| Flagellar motor switch protein [Bacillus cereus m1293]
Length = 328
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +D+ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLMNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKAL 321
>gi|118477197|ref|YP_894348.1| flagellar motor switch protein FliM [Bacillus thuringiensis str. Al
Hakam]
gi|225863621|ref|YP_002748999.1| putative flagellar motor switch protein FliM [Bacillus cereus
03BB102]
gi|229121315|ref|ZP_04250546.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
gi|229183955|ref|ZP_04311170.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
gi|118416422|gb|ABK84841.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|225786262|gb|ACO26479.1| putative flagellar motor switch protein FliM [Bacillus cereus
03BB102]
gi|228599480|gb|EEK57085.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
gi|228662160|gb|EEL17769.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
Length = 328
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|163939573|ref|YP_001644457.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis
KBAB4]
gi|229166618|ref|ZP_04294370.1| Flagellar motor switch protein [Bacillus cereus AH621]
gi|163861770|gb|ABY42829.1| flagellar motor switch protein FliM [Bacillus weihenstephanensis
KBAB4]
gi|228616872|gb|EEK73945.1| Flagellar motor switch protein [Bacillus cereus AH621]
Length = 328
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + + +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
IP + +GK ++C +G+ G + I
Sbjct: 288 IPLHTKVSDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328
>gi|196033337|ref|ZP_03100749.1| putative flagellar motor switch protein FliM [Bacillus cereus W]
gi|195993771|gb|EDX57727.1| putative flagellar motor switch protein FliM [Bacillus cereus W]
Length = 328
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFTLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|229132591|ref|ZP_04261439.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
gi|228650823|gb|EEL06810.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
Length = 328
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + + +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAVGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
IP + +GK ++C +G+ G + I
Sbjct: 288 IPLHTKVTDQLRGYVDGKHKFNCFIGKDGTRKALLFKSFIE 328
>gi|47565432|ref|ZP_00236473.1| flagellar motor switch protein (fliM), putative [Bacillus cereus
G9241]
gi|47557422|gb|EAL15749.1| flagellar motor switch protein (fliM), putative [Bacillus cereus
G9241]
Length = 328
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +D+ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|229029443|ref|ZP_04185526.1| Flagellar motor switch protein [Bacillus cereus AH1271]
gi|228731902|gb|EEL82801.1| Flagellar motor switch protein [Bacillus cereus AH1271]
Length = 328
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEAKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321
>gi|196045129|ref|ZP_03112362.1| putative flagellar motor switch protein FliM [Bacillus cereus
03BB108]
gi|196024131|gb|EDX62805.1| putative flagellar motor switch protein FliM [Bacillus cereus
03BB108]
Length = 328
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ D+ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGDIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|227876753|ref|ZP_03994862.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35243]
gi|269976280|ref|ZP_06183276.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
28-1]
gi|306817700|ref|ZP_07451442.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35239]
gi|307699817|ref|ZP_07636868.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
gi|227842650|gb|EEJ52850.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35243]
gi|269935609|gb|EEZ92147.1| putative flagellar motor switch protein FliM [Mobiluncus mulieris
28-1]
gi|304649514|gb|EFM46797.1| flagellar motor switch protein FliM [Mobiluncus mulieris ATCC
35239]
gi|307614855|gb|EFN94073.1| flagellar motor switch protein FliM [Mobiluncus mulieris FB024-16]
Length = 307
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/307 (8%), Positives = 86/307 (28%), Gaps = 10/307 (3%)
Query: 9 NTSPLHPILLAR---LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
S A+ + + + +I + + ++ + + S
Sbjct: 3 KQSKADRAAEAKVYDFSKPMKLPREYARIMELALEAFTRSWINQLVGRLHVVITGSAGDL 62
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ I + + + + +++LLG + I +R
Sbjct: 63 VMRSYDDYIAKMPSTTCMVIMDFQNGRNKGILQFPRQTALAWVDHLLGGQGD-IESTPDR 121
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
L+ VE + + ++ L+ + L + + + +
Sbjct: 122 QLTEVEVSILSDFLKRVMMDLDMAFAGMLPLETKLLNLEYA--PQFVQAYDGSTPILFAP 179
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL----IDPFARKTYQLNVN 241
+ +T +++P + ++ + + + ++ V
Sbjct: 180 ITLTTGEHVDDCSIMMPVAMITDAIHKGDANADTRSEEQKREAAIMRQRLVDNLEEIPVE 239
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ R + +K +++ L +G +P +H L + + G G +
Sbjct: 240 VAVRFSRRKINPRELDGLAVGDTLPLIHPTSRPLDLMVDDLILAEAAAGTSGSRLAAMVV 299
Query: 302 DRINFDQ 308
++
Sbjct: 300 SVNKGEK 306
>gi|324325781|gb|ADY21041.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 328
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQSLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|229160725|ref|ZP_04288717.1| Flagellar motor switch protein [Bacillus cereus R309803]
gi|228622740|gb|EEK79574.1| Flagellar motor switch protein [Bacillus cereus R309803]
Length = 328
Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 95/274 (34%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQALSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L + VI + E LG + R L+ E A I L
Sbjct: 111 LGLPELGEIVVEIDLAFVIYIHECWLGGDSKR-TFTMRRPLTAFEFLTLDNIFALICKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSS--QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S S ++ + K QL + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKRYTSEVEVKVNQLYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDQLLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|229155334|ref|ZP_04283444.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
gi|228628049|gb|EEK84766.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
Length = 328
Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|196039000|ref|ZP_03106307.1| putative flagellar motor switch protein FliM [Bacillus cereus
NVH0597-99]
gi|301053301|ref|YP_003791512.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|196030145|gb|EDX68745.1| putative flagellar motor switch protein FliM [Bacillus cereus
NVH0597-99]
gi|300375470|gb|ADK04374.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 328
Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + I +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELIGYVDGKHKFNCFIGKDGTRKAL 321
>gi|47091661|ref|ZP_00229457.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b
H7858]
gi|47019980|gb|EAL10717.1| flagellar motor switch protein FliM [Listeria monocytogenes str. 4b
H7858]
gi|328467265|gb|EGF38345.1| flagellar motor switch protein FliM [Listeria monocytogenes 1816]
Length = 330
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELNKLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|49477321|ref|YP_035882.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|218902877|ref|YP_002450711.1| putative flagellar motor switch protein FliM [Bacillus cereus
AH820]
gi|228914341|ref|ZP_04077956.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926799|ref|ZP_04089867.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933047|ref|ZP_04095910.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228984848|ref|ZP_04145018.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090726|ref|ZP_04221959.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
gi|254723848|ref|ZP_05185634.1| flagellar motor switch protein FliM [Bacillus anthracis str. A1055]
gi|49328877|gb|AAT59523.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|218538906|gb|ACK91304.1| putative flagellar motor switch protein FliM [Bacillus cereus
AH820]
gi|228692668|gb|EEL46394.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
gi|228774798|gb|EEM23194.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228826648|gb|EEM72419.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832912|gb|EEM78481.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845335|gb|EEM90371.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 328
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|46906950|ref|YP_013339.1| flagellar motor switch protein FliM [Listeria monocytogenes
serotype 4b str. F2365]
gi|217965203|ref|YP_002350881.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|226223330|ref|YP_002757437.1| flagellar switch protein FliM [Listeria monocytogenes Clip81459]
gi|254824021|ref|ZP_05229022.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J1-194]
gi|254853097|ref|ZP_05242445.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
R2-503]
gi|254932021|ref|ZP_05265380.1| flagellar motor switch protein FliM [Listeria monocytogenes
HPB2262]
gi|254994391|ref|ZP_05276581.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J2-064]
gi|290893996|ref|ZP_06556971.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J2-071]
gi|300764511|ref|ZP_07074504.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
N1-017]
gi|46880216|gb|AAT03516.1| flagellar motor switch protein FliM [Listeria monocytogenes
serotype 4b str. F2365]
gi|217334473|gb|ACK40267.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|225875792|emb|CAS04495.1| Putative flagellar switch protein FliM [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258606446|gb|EEW19054.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
R2-503]
gi|290556442|gb|EFD89981.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J2-071]
gi|293583573|gb|EFF95605.1| flagellar motor switch protein FliM [Listeria monocytogenes
HPB2262]
gi|293593249|gb|EFG01010.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J1-194]
gi|300514865|gb|EFK41919.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
N1-017]
gi|307570238|emb|CAR83417.1| fliM [Listeria monocytogenes L99]
gi|313610117|gb|EFR85440.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
F2-208]
gi|332311124|gb|EGJ24219.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 330
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|16802741|ref|NP_464226.1| flagellar motor switch protein FliM [Listeria monocytogenes EGD-e]
gi|47095265|ref|ZP_00232876.1| flagellar motor switch protein FliM [Listeria monocytogenes str.
1/2a F6854]
gi|224498781|ref|ZP_03667130.1| flagellar motor switch protein FliM [Listeria monocytogenes Finland
1988]
gi|224501996|ref|ZP_03670303.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
R2-561]
gi|254829356|ref|ZP_05234043.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
N3-165]
gi|254830310|ref|ZP_05234965.1| flagellar motor switch protein FliM [Listeria monocytogenes 10403S]
gi|254900065|ref|ZP_05259989.1| flagellar motor switch protein FliM [Listeria monocytogenes J0161]
gi|254911382|ref|ZP_05261394.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818]
gi|254935709|ref|ZP_05267406.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900]
gi|284801029|ref|YP_003412894.1| flagellar motor switch protein FliM [Listeria monocytogenes
08-5578]
gi|284994171|ref|YP_003415939.1| flagellar motor switch protein FliM [Listeria monocytogenes
08-5923]
gi|315281360|ref|ZP_07870000.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120]
gi|16410088|emb|CAC98777.1| lmo0699 [Listeria monocytogenes EGD-e]
gi|47016336|gb|EAL07258.1| flagellar motor switch protein FliM [Listeria monocytogenes str.
1/2a F6854]
gi|258601769|gb|EEW15094.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
N3-165]
gi|258608292|gb|EEW20900.1| flagellar motor switch protein FliM [Listeria monocytogenes F6900]
gi|284056591|gb|ADB67532.1| flagellar motor switch protein FliM [Listeria monocytogenes
08-5578]
gi|284059638|gb|ADB70577.1| flagellar motor switch protein FliM [Listeria monocytogenes
08-5923]
gi|293589319|gb|EFF97653.1| flagellar motor switch protein FliM [Listeria monocytogenes J2818]
gi|313614999|gb|EFR88503.1| flagellar motor switch protein FliM [Listeria marthii FSL S4-120]
Length = 330
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|42780856|ref|NP_978103.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987]
gi|217959246|ref|YP_002337794.1| flagellar motor switch protein FliM [Bacillus cereus AH187]
gi|222095386|ref|YP_002529446.1| flagellar motor switch protein flim [Bacillus cereus Q1]
gi|229138463|ref|ZP_04267052.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
gi|42736776|gb|AAS40711.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 10987]
gi|217068243|gb|ACJ82493.1| putative flagellar motor switch protein FliM [Bacillus cereus
AH187]
gi|221239444|gb|ACM12154.1| flagellar motor switch protein FliM [Bacillus cereus Q1]
gi|228645000|gb|EEL01243.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
Length = 328
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 38/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +D+ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIDLEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E A + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFALLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIKPTFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGFVDGKHKFNCFIGKDGTRKAL 321
>gi|52143697|ref|YP_083133.1| flagellar motor switch protein FliM [Bacillus cereus E33L]
gi|228945366|ref|ZP_04107721.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|51977166|gb|AAU18716.1| flagellar motor switch protein M [Bacillus cereus E33L]
gi|228814338|gb|EEM60604.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 328
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLRTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|229096248|ref|ZP_04227221.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
gi|229115203|ref|ZP_04244613.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
gi|228668343|gb|EEL23775.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
gi|228687208|gb|EEL41113.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
Length = 328
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ D+ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSDIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|228920473|ref|ZP_04083818.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229069314|ref|ZP_04202604.1| Flagellar motor switch protein [Bacillus cereus F65185]
gi|229109219|ref|ZP_04238818.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
gi|229178171|ref|ZP_04305542.1| Flagellar motor switch protein [Bacillus cereus 172560W]
gi|228605301|gb|EEK62751.1| Flagellar motor switch protein [Bacillus cereus 172560W]
gi|228674229|gb|EEL29474.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
gi|228713801|gb|EEL65686.1| Flagellar motor switch protein [Bacillus cereus F65185]
gi|228839103|gb|EEM84399.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 328
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|284041533|ref|YP_003391873.1| surface presentation of antigens (SPOA) protein [Conexibacter
woesei DSM 14684]
gi|283945754|gb|ADB48498.1| surface presentation of antigens (SPOA) protein [Conexibacter
woesei DSM 14684]
Length = 322
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/291 (13%), Positives = 97/291 (33%), Gaps = 10/291 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ + T ++ I + + + ++ + +++ + +S
Sbjct: 38 VDFARPTKFT--SEQERRIVRTLDM----FCQTAAARLTAELRVPLELEVINTTQLTWSA 91
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ + ++ + + V+ +E LLG + E P+ R LS ++
Sbjct: 92 AQQQLPPASLGTPLEVAPHDTRMLMTAELPFVLMAIEYLLGGAPERPPR--QRKLSEIDW 149
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
L+KR ++ L+ + L +++ +E TI + I
Sbjct: 150 VLSKRLFETLTTQLSIVWQDLAGQT--LAAQEVDSHVEGMQVAAISEPTLTITLESRINR 207
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
+S+ L+IP ++ ++ +V + + +
Sbjct: 208 HSSTLALLIPWVSIDPVADQIAGRDLRTRADDPRAAALVQAALSGAHVTMRAEVGSVEMA 267
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ DV+ L G ++ ++ A I+ + GR G ++I DR
Sbjct: 268 IDDVLGLAPGDLVKLSSLAADGVVVYAEDVPIHHAQPGRSGARRAVQIVDR 318
>gi|229189861|ref|ZP_04316871.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
gi|228593535|gb|EEK51344.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
Length = 328
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGQQKMTMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|262273545|ref|ZP_06051359.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
gi|262222523|gb|EEY73834.1| flagellar motor switch protein FliM [Grimontia hollisae CIP 101886]
Length = 296
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 93/298 (31%), Gaps = 16/298 (5%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ P LT + ++ ++ + F+ + V+ +Y +
Sbjct: 15 DVRPYD------LTSPEHRIGAVLATIDNVCKQFETLAKQAFQHILRCPVEFTYQQQHTE 68
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
+ + E ++ + ++S N + L L++ G + +S
Sbjct: 69 TLQDHLKAMGEQSLYREFTVSPHHFNGVLVIEKELQFLLVDLFFGGKGIVKARTT---IS 125
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E ++ R Q+ + L + L R ++ M
Sbjct: 126 DTEWRMMARFFGQMLDQYAIAWQSVSPWQCQL---QPKENLDLENTRQDSQLHQICRFTM 182
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ + +P L + + + +L + + + + +
Sbjct: 183 NVCGHQGWIDISLPLNGLDFLRH--RHATDDDAATAPELQHIVNATLKKAPIRLLSTLCE 240
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++ +L D++ LK+G VIP ++ A +++ ++ +++ + I
Sbjct: 241 RQLSLGDIMALKVGDVIPVELP--GEVVVRAGRTPLFTAKVAEQNATLVLQVQNVIEQ 296
>gi|228952146|ref|ZP_04114238.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|46019719|emb|CAG25464.1| FliM protein [Bacillus thuringiensis serovar alesti]
gi|228807500|gb|EEM54027.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 328
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 93/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYMSEVEMKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|213419486|ref|ZP_03352552.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 153
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 1/154 (0%)
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
DI+ + + + + + L + S +LV ++NL G
Sbjct: 1 DITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRF 60
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
++ R + E+++ R + + + N N
Sbjct: 61 PTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPN 119
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
+ V ++ I N+ F + +P + +
Sbjct: 120 DIVVNTPFHVEIGNLTGEFNICLPFSMIEPLREL 153
>gi|30019808|ref|NP_831439.1| flagellar motor switch protein FliM [Bacillus cereus ATCC 14579]
gi|206970515|ref|ZP_03231467.1| putative flagellar motor switch protein FliM [Bacillus cereus
AH1134]
gi|218233573|ref|YP_002366448.1| flagellar motor switch protein FliM [Bacillus cereus B4264]
gi|228958044|ref|ZP_04119779.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229102362|ref|ZP_04233070.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
gi|229127090|ref|ZP_04256087.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
gi|229144376|ref|ZP_04272781.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
gi|229149968|ref|ZP_04278194.1| Flagellar motor switch protein [Bacillus cereus m1550]
gi|29895353|gb|AAP08640.1| Flagellar motor switch protein fliM [Bacillus cereus ATCC 14579]
gi|206734151|gb|EDZ51321.1| putative flagellar motor switch protein FliM [Bacillus cereus
AH1134]
gi|218161530|gb|ACK61522.1| putative flagellar motor switch protein FliM [Bacillus cereus
B4264]
gi|228633490|gb|EEK90093.1| Flagellar motor switch protein [Bacillus cereus m1550]
gi|228639007|gb|EEK95432.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
gi|228656206|gb|EEL12047.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
gi|228681009|gb|EEL35178.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
gi|228801561|gb|EEM48443.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 328
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|75763360|ref|ZP_00743098.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218896697|ref|YP_002445108.1| putative flagellar motor switch protein FliM [Bacillus cereus
G9842]
gi|228900345|ref|ZP_04064574.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
gi|228907396|ref|ZP_04071254.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
gi|228938876|ref|ZP_04101476.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228964747|ref|ZP_04125854.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971757|ref|ZP_04132378.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978366|ref|ZP_04138743.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
gi|229043519|ref|ZP_04191228.1| Flagellar motor switch protein [Bacillus cereus AH676]
gi|74489151|gb|EAO52629.1| Flagellar motor switch protein fliM [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218542394|gb|ACK94788.1| putative flagellar motor switch protein FliM [Bacillus cereus
G9842]
gi|228725741|gb|EEL76989.1| Flagellar motor switch protein [Bacillus cereus AH676]
gi|228781383|gb|EEM29584.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
gi|228787847|gb|EEM35805.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794997|gb|EEM42496.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228820725|gb|EEM66750.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228852257|gb|EEM97053.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
gi|228859232|gb|EEN03663.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
gi|326939376|gb|AEA15272.1| flagellar motor switch protein FliM [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 328
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRRKYTSEVEVKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|315301944|ref|ZP_07872945.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596]
gi|313629686|gb|EFR97818.1| flagellar motor switch protein FliM [Listeria ivanovii FSL F6-596]
Length = 330
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 93/274 (33%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I VI + E L G + + R LS E+ K + +
Sbjct: 108 DLGDPELGQIIIELDLAYVIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + + P + N+ + +N+++ E S+ + +P +
Sbjct: 167 LKESFKSVHPIEPEIVSVET--NPALIRVTSPNDMMALVNVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|229078945|ref|ZP_04211497.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
gi|228704359|gb|EEL56793.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
Length = 328
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEIKVNQVYKPVHVAIGEQKMTMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|328475661|gb|EGF46410.1| flagellar motor switch protein FliM [Listeria monocytogenes 220]
Length = 330
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKDMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|229172409|ref|ZP_04299968.1| Flagellar motor switch protein [Bacillus cereus MM3]
gi|228610880|gb|EEK68143.1| Flagellar motor switch protein [Bacillus cereus MM3]
Length = 328
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLAARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM E ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTEFWDTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I ++ T+ ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQRMTMGEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|323139660|ref|ZP_08074702.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
ATCC 49242]
gi|322395092|gb|EFX97651.1| surface presentation of antigens (SPOA) protein [Methylocystis sp.
ATCC 49242]
Length = 314
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 3/286 (1%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS 90
+ + + +E ++ V +S + + + + +
Sbjct: 29 RMPALTLIFEETAANFTRALEEFTNIPVALSLEDLDAKRVGDLQEHCEGLSSILVYDANG 88
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S+ F + + +E LLG+ +R+ S VE +L + ++ L +
Sbjct: 89 LSAKFAVAVDSGFRDMAVEMLLGSGVVERSDKTDRAASRVEARLVNFAVNRLLNRLAAAL 148
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E E + +++P+ L
Sbjct: 149 APVAEVQ--FEQDMLASEAGYGAVGQRGAVAIACRFRLKSLEHEGLVAIVLPRAALDPYR 206
Query: 211 LISLSSQNKSE-NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ E + + V ++ +I + TL+D+ L++G V+
Sbjct: 207 TALSRFPGAEGVARDERWSENLYDNIVRTEVAVNVKIEARGFTLEDIANLEVGDVLGLPI 266
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ + + G+ ++ C LG+ +YT+R+ D + Q ++N L
Sbjct: 267 APTSPIRIESEGRTLFWCTLGQKDGHYTVRLEDFSDERQSFIENIL 312
>gi|16799782|ref|NP_470050.1| flagellar motor switch protein FliM [Listeria innocua Clip11262]
gi|16413159|emb|CAC95939.1| lin0707 [Listeria innocua Clip11262]
gi|313624714|gb|EFR94669.1| flagellar motor switch protein FliM [Listeria innocua FSL J1-023]
Length = 330
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|313620068|gb|EFR91581.1| flagellar motor switch protein FliM [Listeria innocua FSL S4-378]
Length = 330
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|289433977|ref|YP_003463849.1| flagellar motor switch protein FliM [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170221|emb|CBH26761.1| flagellar motor switch protein FliM [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313634376|gb|EFS00971.1| flagellar motor switch protein FliM [Listeria seeligeri FSL N1-067]
gi|313639061|gb|EFS04048.1| flagellar motor switch protein FliM [Listeria seeligeri FSL S4-171]
Length = 330
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 37/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTVASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I VI + E L G + + R LS E+ K + +
Sbjct: 108 DLGDPELGQIIIELDLAYVIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + + +P + N+ + +N+++ E S+ + +P +
Sbjct: 167 LKESFKSVHPIAPEIVSVET--NPALIRVTSPNDMMALVNVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|319403952|emb|CBI77540.1| Flagellar motor switch protein FliM [Bartonella rochalimae ATCC
BAA-1498]
Length = 322
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 3/289 (1%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
L + G + L L S + K I
Sbjct: 21 DALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLSNYTSLKFTTDVQSLDTLKADQIT 80
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + W ++ LV E GAS + R S +E K+
Sbjct: 81 QAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFGASEPMVTNRNGRPFSPIESKV 140
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
++ L+ L + N + + + + + V
Sbjct: 141 GATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVE 198
Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ +++P+ + + ++ ++ + V I+ I TL
Sbjct: 199 TYVNILMPRTCHRPIQEAVTRALRAPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTL 258
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ TLK+GQ++P L + K +Y C LG++G +++IR+T+
Sbjct: 259 NELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307
>gi|86157791|ref|YP_464576.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774302|gb|ABC81139.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-C]
Length = 334
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/305 (14%), Positives = 85/305 (27%), Gaps = 12/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S +P R+ ++ L + L + IS
Sbjct: 29 SSRAQVAPYDLTSQDRIIRGQ------MPTLDAINEQVASMLGIGLAGRTRLALRISSAP 82
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
KF+ + L + L LL LG P+
Sbjct: 83 ATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAEALLAAALGDRRVRQPEEGG 142
Query: 125 ---RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R L++VE+ + +R + ++ + Q + P E + + +
Sbjct: 143 DTRRELTSVEQLVLRRLLRLLADAMTQAWAPVLPFEP--EVLRLEPDPRMASIAPPTDVG 200
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
+ + L+IP + S + S+ E D AR+ Q+ V
Sbjct: 201 IVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVE 259
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
I + ++ L G+V+ E + G+E G + + +
Sbjct: 260 IRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGREKLLGTPTVSGGSLALVVD 319
Query: 302 DRINF 306
+
Sbjct: 320 QPLRP 324
>gi|296502364|ref|YP_003664064.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171]
gi|296323416|gb|ADH06344.1| flagellar motor switch protein FliM [Bacillus thuringiensis BMB171]
Length = 328
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 35/274 (12%), Positives = 91/274 (33%), Gaps = 8/274 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFLLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P +++ ++ +N+NM + ++ + IP ++
Sbjct: 170 EQSFESVVAIEPKFVTTETDPN--ALKITTASDIISLLNVNMKTDFWNTTVRIGIPFLSV 227
Query: 207 LKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S + + K Q+ + I +K + ++ ++ G +
Sbjct: 228 EEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMRMSEIEQIEEGDI 287
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
IP + + +GK ++C +G+ G +
Sbjct: 288 IPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 321
>gi|197122895|ref|YP_002134846.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
gi|220917687|ref|YP_002492991.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-1]
gi|196172744|gb|ACG73717.1| flagellar motor switch protein FliM [Anaeromyxobacter sp. K]
gi|219955541|gb|ACL65925.1| flagellar motor switch protein FliM [Anaeromyxobacter dehalogenans
2CP-1]
Length = 338
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 41/305 (13%), Positives = 84/305 (27%), Gaps = 12/305 (3%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S +P R+ ++ L + + I+
Sbjct: 33 SSRAQVAPYDLTSQDRIIRGQ------MPTLDAINEQVASMLGIGLAGRTRQALRITSAP 86
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
KF+ + L + L LL LG P+
Sbjct: 87 ATLLKFADLAPLLAPPASVCILGLGASYGFALAVLEAGLAEALLAAALGDRRVRQPEEGG 146
Query: 125 ---RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
R L++VE+ + +R + ++ + Q + P E + + +
Sbjct: 147 DTRRELTSVEQLVLRRLLRLLAEAMTQAWAPVLPFEP--EVLRLEPDPRMASIASPTDVG 204
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
+ + L+IP + S + S+ E D AR+ Q+ V
Sbjct: 205 IVSGFELK-GGIEGRLHLVIPYAAVESAKQKLSSPRRLSQRADERFADALAREVEQVPVE 263
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
I + ++ L G+V+ E + G+E G + + +
Sbjct: 264 IRGLYGRARIPFARLLELAEGEVLLLDTDEGRPVPVVVQGREKLLGTPTVSGGSLALVVD 323
Query: 302 DRINF 306
+
Sbjct: 324 QPLRP 328
>gi|225159021|ref|ZP_03725331.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2]
gi|224802400|gb|EEG20662.1| flagellar motor switch protein FliM [Opitutaceae bacterium TAV2]
Length = 344
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 26/288 (9%), Positives = 88/288 (30%), Gaps = 5/288 (1%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
+ + + L + + L + ++ T + S
Sbjct: 57 DFRNPVFLSEVELRRLRLLHDEFIRHLGSRIALFLRMECTFRMTRLTTLTHVKFTESLPA 116
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+ + L +T+++ +LG +R L+ +E L + +
Sbjct: 117 PSHICLFKADPLPGIGVLTINPRLALTIVDRMLGGRG--HSVTADRHLTEIEIALLEDML 174
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ E P + + + + + +++ + + L
Sbjct: 175 TLLLEEWCIQWKAGPELHPQIVG--HENNGCFLQTSARDAVMLVLALDVNFGDCTGALNL 232
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ-LNVNIDTRINLKKTTLKDVVT 258
+P + + +++ + + Y+ + + + + + +L+++ +
Sbjct: 233 AVPYYMIETVVRDLQACRHQDNAPAARPDATGWKPVYEHIALPVRAEWPVFEASLREIAS 292
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L++G V+ + G E ++ +G G ++I ++
Sbjct: 293 LRVGDVLELPAGILDDTRVLLAGAEKFTGTVGVEGDRVAVKINRKLPT 340
>gi|88704280|ref|ZP_01101994.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
gi|88701331|gb|EAQ98436.1| flagellar motor switch protein FliM [Congregibacter litoralis KT71]
Length = 327
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 30/268 (11%), Positives = 86/268 (32%), Gaps = 5/268 (1%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
L + + L + + ++ + + + + S + S +LS +
Sbjct: 52 ALGPLVERHAEALGEALESGFSIEFTVRGDTPSLLTVADAVASLERTVAVSTTTLSPLAG 111
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
F +L+ ++ G + +L+ E +LA+R + +
Sbjct: 112 PVFAIAPADLLSFVVNAYFGGGSGGPAESARSNLTPTELRLAERIAEFQLSSMINSWVDK 171
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI- 212
+ + + ++E + I ++ + +S+ +++P L
Sbjct: 172 LPLEAGEIN--TLGMPDRLEMLPASEMLLRIAFTLSAGDFSSALSVMLPFAALEPYRERF 229
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + + + F R+ + + + + + L D++ L+ G VIP
Sbjct: 230 APPRKQDDVFEGQTWEPFFRRELPGIELEVAGVLATQSIALADLLELEAGAVIPLA--PA 287
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300
L + + G +++
Sbjct: 288 EQVSLKVDNVTLAEGRYGSFDGVKAVQL 315
>gi|322432979|ref|YP_004210228.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9]
gi|321165206|gb|ADW70910.1| flagellar motor switch protein FliM [Acidobacterium sp. MP5ACTX9]
Length = 321
Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 37/308 (12%), Positives = 98/308 (31%), Gaps = 6/308 (1%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
++G+S S +L + +++ + L + +++
Sbjct: 4 IQGKSSPHAMSANSTVLPCNFRSAGRLSNESARTLTTVHETLARNLTNSLDVYLGTGLEV 63
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + S S+ + ++L+ T+++ LLG S +
Sbjct: 64 RLIHLEQFSMEDFKATCMSAAYMLPCSAKPSSNTLLLEMDSSLMFTVIDLLLGGSGKNPE 123
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
R L+ +++++ + + I+ + + L + + E
Sbjct: 124 --SARELTEIDEEIMEGVGSLIAQQIERAWQPVG---FVLTPGKCVKPNLAHRVFPPTEK 178
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
V I+ +++ V + + I S K+ + ++
Sbjct: 179 VLRIHFEVSVAGVTGALYIAFQASMASHLVRNIRADSTGKTGGVVYMPLPKLQKRILDCQ 238
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ I K ++D+ +++G V+ L+ GK Y R G N ++
Sbjct: 239 FALSGDIPNLKVPVRDLARIEVGSVLMLSAPVSMPGKLTLEGKTYYEALPVRQGNNKAMQ 298
Query: 300 ITDRINFD 307
+ + I+
Sbjct: 299 LMNAIHSK 306
>gi|289806356|ref|ZP_06536985.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 154
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 1/154 (0%)
Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
+ DI+ + + + + + L + S +LV ++
Sbjct: 2 IFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVD 61
Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
NL G ++ R + E+++ R + + +
Sbjct: 62 NLFGGDGRFPTKVEGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSE-MQVK 120
Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
N N+ V ++ I N+ F + +P
Sbjct: 121 FTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPF 154
>gi|319406968|emb|CBI80605.1| Flagellar motor switch protein FliM [Bartonella sp. 1-1C]
Length = 322
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/289 (15%), Positives = 91/289 (31%), Gaps = 3/289 (1%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
L + G + L L S + K I
Sbjct: 21 DALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLSNYTSLKFMTDVQSLDTLKAEQIT 80
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + W ++ LV E GAS I R S +E K+
Sbjct: 81 QAIGTEALLVYFNSDRWGNDVIFVLDATLVELATEVFFGASEPMITNRNGRPFSPIESKV 140
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
++ L+ L + N + + + + + V
Sbjct: 141 GATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVE 198
Query: 195 SSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+ +++P+ + + ++ ++ + V I+ I TL
Sbjct: 199 THVNILMPRSCHRPIQEAVTRALRAPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTL 258
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ TLK+GQ++P L + K +Y C LG++G +++IR+T+
Sbjct: 259 NELSTLKVGQILPLPANAAKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307
>gi|116872088|ref|YP_848869.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740966|emb|CAK20086.1| flagellar motor switch protein FliM [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 330
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 94/274 (34%), Gaps = 6/274 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFISQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSNLEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
L + SP + + N+ + +++++ E S+ + +P +
Sbjct: 167 LRDSFKSVHPISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFS 224
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + + ++ + ++ +Q+ R+ KTT K++ L++G V+
Sbjct: 225 VEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNMLEVGDVL 284
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + C +G+ G ++
Sbjct: 285 LTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 318
>gi|114794453|pdb|2HP7|A Chain A, Structure Of Flim Provides Insight Into Assembly Of The
Switch Complex In The Bacterial Flagella Motor
Length = 183
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 6/185 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + + + + L ++ VD+ S + I S +
Sbjct: 5 SKEQLRTFQMIHENFGRALSTYLSGRLRTFVDVEI-SIDQLTYEEFIRSVMIPSFIVIFT 63
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + +L T+L+ ++G E P NR + +E + ++ + + +L
Sbjct: 64 GDVFEGSAIFEMRLDLFYTMLDIIMGGPGENPP---NRPPTEIETSIMRKEVTNMLTLLA 120
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
Q S Q P++E+ + NE V + +++ S + P L
Sbjct: 121 QAWSDFQYFIPSIENVET--NPQFVQIVPPNEIVLLVTASVSWGEFTSFINVCWPFSLLE 178
Query: 208 KTTLI 212
Sbjct: 179 PLLEK 183
>gi|298346003|ref|YP_003718690.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
43063]
gi|304390239|ref|ZP_07372193.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654591|ref|ZP_07907497.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
51333]
gi|315657504|ref|ZP_07910386.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236064|gb|ADI67196.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
43063]
gi|304326721|gb|EFL93965.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491055|gb|EFU80674.1| flagellar motor switch protein FliM [Mobiluncus curtisii ATCC
51333]
gi|315491976|gb|EFU81585.1| flagellar motor switch protein FliM [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 306
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 23/297 (7%), Positives = 81/297 (27%), Gaps = 6/297 (2%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
+ + + + +I + + ++ + + + I
Sbjct: 12 DARVYDFSKPMKLPREYARIMEMALEAFTRHWVNQLVGRLHVVITGEVGDLSMRSYDDYI 71
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + + + +++LLG + + +R L+ VE +
Sbjct: 72 KTLPNQTLMVIIDFQGGRNKGVLQFPRQTALAWVDHLLGGTGDV-ESTPDRELTEVEVSV 130
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
+ ++ A L+ + + + V + +T
Sbjct: 131 LIDFLKRVLADLDIAFQSMLPLDSQFRTIEYA--PQFVQVVDGSTPVLFAPITLTAGEHL 188
Query: 195 SSFVLIIPQETLLKTT---LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+++P + + + + + ++ + + + + R +
Sbjct: 189 DDCSIMMPVSMITDAIHQGDVHDTRTEQQKAEAAAVRQHLVDTLEDVPIGVAVRFTPRNV 248
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+++ L IG +P +H L + G G + ++
Sbjct: 249 NPRELDGLAIGDTLPLIHPTSRPLDLVVGDLILAETAAGTSGSRLAAMVVSVNKGEK 305
>gi|300975540|ref|ZP_07173051.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1]
gi|301050694|ref|ZP_07197555.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1]
gi|300297617|gb|EFJ54002.1| flagellar motor switch protein FliM [Escherichia coli MS 185-1]
gi|300410309|gb|EFJ93847.1| flagellar motor switch protein FliM [Escherichia coli MS 45-1]
Length = 178
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 4/170 (2%)
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+ + + N N+ V ++ I N+ F
Sbjct: 1 MLKLALEGYSDAWKAINPLEVEYVRSE-MQVKFTNITTSPNDIVVNTPFHVEIGNLTGEF 59
Query: 198 VLIIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ +P + + ++ + S N+ ++ D R+ + + L +
Sbjct: 60 NICLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQI 119
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ LK G V+P I +G + + + G + Y +RI IN
Sbjct: 120 LKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 167
>gi|119503672|ref|ZP_01625755.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
gi|119460734|gb|EAW41826.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
Length = 323
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 101/295 (34%), Gaps = 10/295 (3%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSS--LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
G+ T+ K S L + + L + I + +
Sbjct: 29 FDDGQFKSHDFGAGEALTLSKWSELDGLLRAHAEVLQGVLLRNFGQQATIEPFAPLFARV 88
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+I + + + + + + L+ G S P+L + ++
Sbjct: 89 GDLIPAMSDRIALITTEIKPLEGESHLEFPGDFLSFLVNQYFGGSTVASPKLAGK-VTPS 147
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E++L+++ + L + S P D Y + + ++ + ++
Sbjct: 148 EQRLSEQLAKDVLRTLVEVWSDRLALEP--GDLYVDITTDRLSLLPADMGYVVLTYSVAC 205
Query: 191 E-NVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ F L++P E+ L L+ + + +++V + ++
Sbjct: 206 GSDYQGEFRLLLPYESMALQAPRLMPARREEPEVVVEPEWEARLQSAVPEIDVELCGVVS 265
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L +T+L++++ K+G VIP A L G+ I + G + ++ITD
Sbjct: 266 LLETSLRNLLAFKVGTVIPIDEP--QTAQLMVEGRGIARGKYGAHDSSRAVQITD 318
>gi|90418398|ref|ZP_01226310.1| possible flagellar motor switch protein fliM [Aurantimonas
manganoxydans SI85-9A1]
gi|90338070|gb|EAS51721.1| possible flagellar motor switch protein fliM [Aurantimonas
manganoxydans SI85-9A1]
Length = 348
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 31/302 (10%), Positives = 98/302 (32%), Gaps = 3/302 (0%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+ RL + + + +D++ +S +
Sbjct: 48 DVGERLRNAAEFEPRRLPRLKHMAETWAASAATKISAIAGASLDLTLREVESDFGPELDE 107
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ + +++ S + S + + + L+ L A + +++ +
Sbjct: 108 AEDDGTMYAPLSSPRFRSPGYAMLDHEALEALISALFAAEPSPPGTPPRTP-TDLDRSIV 166
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
K +A I+ E ++ + + L + + ++T+ ++++
Sbjct: 167 KLGLATIADSALSVFEMIGELRLSVGNIINAAELGE-QLAGETDRFILFRFDLTVASLST 225
Query: 196 SFVLIIPQETLLK-TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
+ +P + + ++ E + + ++ + + KK L
Sbjct: 226 TITFALPGALFAPHLRFLREPPKMPPPDREESWSNAIKESFAKSDLRLSAIVTKKKIDLG 285
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ +G IP + + + ++ +GR +Y +RI +RI+ ++ + +
Sbjct: 286 TIAGFAVGDTIPLDVSANSLIAIECEDQPLFRAHMGRSRDSYVVRIEERIDPAEEFIDDI 345
Query: 315 LH 316
L
Sbjct: 346 LS 347
>gi|320107039|ref|YP_004182629.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4]
gi|319925560|gb|ADV82635.1| flagellar motor switch protein FliM [Terriglobus saanensis SP1PR4]
Length = 326
Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 6/271 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
+ ++ + + L + + + + FS + + E + L
Sbjct: 28 EQLRALHNMQDQFARNLTHTLGAWLRTSFIANLVATEQKLFSGFLATVPEAAYVASLRLE 87
Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
+ + NLV +++ LLG S R L+ +E+ + I+ N
Sbjct: 88 PLGVHGALLIDLNLVSPIVDLLLGGSGRAGEV---RDLTEIEEAILFSVSEMIAREFNVA 144
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
E L++ + E + + + + V IP +L
Sbjct: 145 WQA-SGIHFATEKREREGQLQRLMGYV--EKTLCMTYEVVMPEARGNLVFCIPAVSLSSI 201
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+S +++ +S + + Q ++ + + +++ +++GQV+
Sbjct: 202 LRKMISQRDRPRRRSSESRLRVEDRIVQSRFSVALQFPQMRLGAHEIMEMQVGQVVRLPL 261
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
T A L + R G++ ++
Sbjct: 262 PRNTMAELRVGAVTAFRAHPVRAGEHRAAQV 292
>gi|319898628|ref|YP_004158721.1| flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
gi|319402592|emb|CBI76137.1| Flagellar motor switch protein FliM [Bartonella clarridgeiae 73]
Length = 322
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 7/291 (2%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
+L + G + L L S + K I
Sbjct: 21 DVLTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKADQIT 80
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + W + L+ + E GAS + R S E
Sbjct: 81 QAIGTEALLIYFNSDCWGDDVIFVLDATLIELVTEVFFGASEPIVTNRNGRPFSPTE--- 137
Query: 135 AKRTIAQISAVLNQCISTTQESS--PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ +L I L + N + + + + +
Sbjct: 138 -RKVGETFGKLLAYAIDGVFGVGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGE 196
Query: 193 VASSFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
V + +++P+ + ++ ++ ++ + V I+ I
Sbjct: 197 VEAKVNILMPRSCHRPIQEAVTRALRSPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSM 256
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
TL ++ LK+GQV+P + L + K +Y C LG++G +++IR+T+
Sbjct: 257 TLNELSILKVGQVLPLPANAEKQIRLRSGNKSLYKCSLGKIGTSFSIRVTN 307
>gi|299822275|ref|ZP_07054161.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601]
gi|299815804|gb|EFI83042.1| flagellar motor switch protein FliM [Listeria grayi DSM 20601]
Length = 330
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 90/273 (32%), Gaps = 6/273 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFKENFVF-SQAS 87
+ +L + K + +++ L + F S + + +
Sbjct: 49 EHLESLKTLSSAFAKKTIEYVSQRIRLPIHTEAMLADQVSFASEYVDTMPNDSYLFCIID 108
Query: 88 L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L + +I + E L G + + R LS+ E+ K + L
Sbjct: 109 LGDPELGQVIVEYDLAFLIYIHECLTGGNAKRK-FSERRLLSSFEELALKSLVDLSCQAL 167
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
+ + P L SN+ + IN+++ + S+ + +P ++
Sbjct: 168 QESFKSIHPIEPQLVAVET--NPALLRVTSSNDMMALINIDVKSDYWISTIRVGVPFFSV 225
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ + ++S + + ++ +Q+ + ++ K TL ++ L++G +
Sbjct: 226 EYIMEKLENVVEYTFDKSRNFDEEVEQEIHQVEKDAIIKVGDIKMTLAELDELEVGDCLL 285
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ K + +G+ G I+
Sbjct: 286 TETHVNQPLKGYLSNKWKFESYMGKSGTQKAIK 318
>gi|319405393|emb|CBI79012.1| Flagellar motor switch protein FliM [Bartonella sp. AR 15-3]
Length = 322
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 45/288 (15%), Positives = 92/288 (31%), Gaps = 3/288 (1%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
L + G + L L S + K + I
Sbjct: 22 ALTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKANQITQ 81
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ + + W + LV E GAS + R S VE K+
Sbjct: 82 AIGTEALLIYFNSDHWGDDVIFVLDATLVELATEVFFGASEPMVTNRNGRPFSPVECKVG 141
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
++ L+ L + N + + + + + V +
Sbjct: 142 ATFGKLLAYALDGVFG--IGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVET 199
Query: 196 SFVLIIPQETLLKTTLIS-LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
+++P+ + + ++ ++ + V+I+ I TL
Sbjct: 200 RVNILMPRSCHRPIQEAVTRALRTPAKRTDPLWAKRLKQEVSRSRVHIEAFIQQGSMTLN 259
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ TLK+GQ++P L + K +Y C LG++G +++IR+T+
Sbjct: 260 ELSTLKVGQILPLPANAVKKIKLRSGNKSLYKCSLGKIGTSFSIRVTN 307
>gi|32490802|ref|NP_871056.1| hypothetical protein WGLp053 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166008|dbj|BAC24199.1| fliM [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 319
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 7/300 (2%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
N S + + K+I + +++ + ++ K + +DI+ +
Sbjct: 17 NFSEISKNIFLNKNKSKECNKSIIEKLNNVNQKFTGYIKKEITNYIKEPIDITSKEIYTQ 76
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K+ I F + + + ++ I + V +L+ G + + + S
Sbjct: 77 KYCDFIKDFNTLVSINLIKTNLFKNDLVIILTTEFVSIILDIFFGGTGNSFGRKNLNEFS 136
Query: 129 TVEKKLAKRTIAQISAVLNQCI-STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
EK++ I + + + L + N NE + N
Sbjct: 137 ISEKRIIDILNKLIINCYQKSLKDNINSINLELVTSDTCI---QLINFDKNEKIFISKFN 193
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRI 246
+N+ +F +I ++ L + ++ + ++ + + + I +
Sbjct: 194 FHYKNLKINFFIIFSTFSVENENLFYEKKLSNNKEKEQNKWKNKLVNEIKSSKLLIQVKF 253
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ D++ L G++IP + +K + ++S G + +Y +R+ + IN
Sbjct: 254 ADLSICVSDLINLNKGEIIPIVKTKK--LTAYVDCIPVFSGSYGSLNGHYALRVENIINS 311
>gi|213615589|ref|ZP_03371415.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 190
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 43/163 (26%), Gaps = 6/163 (3%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + + P P R+ + + + + + + DI+
Sbjct: 28 GIASDSDIRPYDPNTQRRVV------RERLQALEIINERFARQFRMGLFNLLRRSPDITV 81
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + + + L + S +LV ++NL G ++
Sbjct: 82 GAIRIQPYHEFARNLPVPTNLNLIHLKPLRGTGLVVFSPSLVFITVDNLFGGDGRFPTKV 141
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
R + E+++ R + +
Sbjct: 142 EGREFTHTEQRVINRMLKLALEGYSDAWKAINPLEVEYVRSEM 184
>gi|332187923|ref|ZP_08389656.1| surface presentation of antigens family protein [Sphingomonas sp.
S17]
gi|332012084|gb|EGI54156.1| surface presentation of antigens family protein [Sphingomonas sp.
S17]
Length = 328
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 23/285 (8%), Positives = 70/285 (24%), Gaps = 15/285 (5%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE------NFVFSQAS 87
L + L +F+ + ++ +F+ + +
Sbjct: 37 TMQHLSARLARSLRGLFESLLREELRCWAEPLVVQRFADYRAERGDGLSAWLPMTMTSIG 96
Query: 88 LSSW--SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
+ + +++L++ G + L S + ++
Sbjct: 97 GPAIQADAKALCVVEGGFMLSLIDLFFGGAGRAPDTLPT-EFSPAVDAMIAHLGDMMATP 155
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
+ Q + + + + + + + ++ P
Sbjct: 156 MRQAWESLARIEFHPGAPE--SSPAMLAKMDGEDAMIVTRFGIAGQDRRPTMLDILYPVA 213
Query: 205 TLLKTTLISLSSQ-NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
L +K R + + + + +L ++ LK G
Sbjct: 214 ALKPHGSALTGKVVDKQAEADPTWRGDLTRAVMTVRFPVRSVLAEPVVSLSRLMELKTGD 273
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
VIP + + G + +G +++T +
Sbjct: 274 VIPISFGPEVP--VMVGGDLLGMGTVGTANGRAAVQLTSLARSAE 316
>gi|254973937|ref|ZP_05270409.1| putative flagellar motor switch protein [Clostridium difficile
QCD-66c26]
gi|255091323|ref|ZP_05320801.1| putative flagellar motor switch protein [Clostridium difficile CIP
107932]
gi|255312981|ref|ZP_05354564.1| putative flagellar motor switch protein [Clostridium difficile
QCD-76w55]
gi|255515740|ref|ZP_05383416.1| putative flagellar motor switch protein [Clostridium difficile
QCD-97b34]
gi|255648834|ref|ZP_05395736.1| putative flagellar motor switch protein [Clostridium difficile
QCD-37x79]
gi|260682051|ref|YP_003213336.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260685649|ref|YP_003216782.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
gi|306518949|ref|ZP_07405296.1| putative flagellar motor switch protein [Clostridium difficile
QCD-32g58]
gi|260208214|emb|CBA60573.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260211665|emb|CBE01935.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
Length = 293
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + L + K ++ + + S + + + V Q +
Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMIVDSIDQVNYQTFLDRVTSSCVVVQNA 75
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ NF ++ ++ G + + +R L+ ++KK+ + + ++
Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVI--KDNDRELTELDKKVLLHLMDDLVRNMH 133
Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
+ Q + L V +++ + S L P
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYN 186
Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L N + SE+ + +++ I ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
G VI + + + Y+ G + ++I D + +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292
>gi|91792691|ref|YP_562342.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
gi|91714693|gb|ABE54619.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
Length = 181
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 3/159 (1%)
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ E V + ++ ++ F + +P +
Sbjct: 4 KPDGSIYVEFDYLDSEVNPAMANIVSPTEVVVINSFHIEVDGGGGDFHITMPYSMIEPIR 63
Query: 211 LISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + Q+ ++ + + V D I + TL+DV+ L+ G +IP
Sbjct: 64 ELLDAGVQSDKQDTDMRWSQALRDEIMDVQVGFDANIVEHELTLRDVMGLRAGDIIPIEL 123
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
++ Y C++G+ + ++I+++I +
Sbjct: 124 P--EHIMMRIEDLPTYRCKMGKSRDHLALKISEKIARPE 160
>gi|219855206|ref|YP_002472328.1| hypothetical protein CKR_1863 [Clostridium kluyveri NBRC 12016]
gi|219568930|dbj|BAH06914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 396
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/376 (10%), Positives = 106/376 (28%), Gaps = 68/376 (18%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G +NTSP + + + + +G + ++ V+I
Sbjct: 19 LNGGQEDENTSPSEAAIESE--DGSELSDVEKDLLGEIGNISMGSASTALSTIINQQVNI 76
Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + F+ + + + ++G +
Sbjct: 77 TTPVVTLTTLRKLKDEFEIPNVALEVKYTAGIIGENLLVMKVTDAYVIANLMMGGEGKIE 136
Query: 120 PQLY--NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
++ ++ + + I + + SP + + +D +
Sbjct: 137 GEVKELGEIETSAVSEAMNQMIGSAATSMATMFMREINISPPVSNIWDDATEPLSQEISE 196
Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISL---------------------- 214
+E + ++ ++ I V S+ + + P T K I +
Sbjct: 197 DETIIKVSFSLKIGELVDSNIMQLFPVNTAKKIIAIMMGKEEEEKEEEKVEDSKPAAPVK 256
Query: 215 ---------SSQNKSENQSEDLIDPFARKTY----------------------------- 236
S Q ++E S P
Sbjct: 257 TENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNIDL 316
Query: 237 --QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I + K ++KD++ L G ++ + + NGK++ E+ + +
Sbjct: 317 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 376
Query: 295 NYTIRITDRINFDQKS 310
N+ +RI I+ + +
Sbjct: 377 NFGVRIKSIISSEDRI 392
>gi|153954742|ref|YP_001395507.1| flagellar motor switch protein [Clostridium kluyveri DSM 555]
gi|146347600|gb|EDK34136.1| FliN [Clostridium kluyveri DSM 555]
Length = 392
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 41/376 (10%), Positives = 106/376 (28%), Gaps = 68/376 (18%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G +NTSP + + + + +G + ++ V+I
Sbjct: 15 LNGGQEDENTSPSEAAIESE--DGSELSDVEKDLLGEIGNISMGSASTALSTIINQQVNI 72
Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + F+ + + + ++G +
Sbjct: 73 TTPVVTLTTLRKLKDEFEIPNVALEVKYTAGIIGENLLVMKVTDAYVIANLMMGGEGKIE 132
Query: 120 PQLY--NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
++ ++ + + I + + SP + + +D +
Sbjct: 133 GEVKELGEIETSAVSEAMNQMIGSAATSMATMFMREINISPPVSNIWDDATEPLSQEISE 192
Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISL---------------------- 214
+E + ++ ++ I V S+ + + P T K I +
Sbjct: 193 DETIIKVSFSLKIGELVDSNIMQLFPVNTAKKIIAIMMGKEEEEKEEEKVEDSKPAAPVK 252
Query: 215 ---------SSQNKSENQSEDLIDPFARKTY----------------------------- 236
S Q ++E S P
Sbjct: 253 TENTSSPSKSPQPQAEASSNIYEKPIETNINKQPVEVQKAVFQSLDAAPSKGNIPRNIDL 312
Query: 237 --QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I + K ++KD++ L G ++ + + NGK++ E+ + +
Sbjct: 313 ILDVPLEISVVLGRTKKSIKDILNLGTGSLVELDKLTEEPVEILVNGKKVAYGEVIVIDE 372
Query: 295 NYTIRITDRINFDQKS 310
N+ +RI I+ + +
Sbjct: 373 NFGVRIKSIISSEDRI 388
>gi|126697842|ref|YP_001086739.1| putative flagellar motor switch protein [Clostridium difficile 630]
gi|115249279|emb|CAJ67092.1| Flagellar motor switch protein FliM [Clostridium difficile]
Length = 293
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + L + K ++ + + S + + + V Q +
Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ NF ++ ++ G + + +R L+ ++KK+ + + ++
Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133
Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
+ Q + L V +++ + S L P
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYN 186
Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L N + SE+ + +++ I ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
G VI + + + Y+ G + ++I D + +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292
>gi|255099440|ref|ZP_05328417.1| putative flagellar motor switch protein [Clostridium difficile
QCD-63q42]
Length = 293
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 86/286 (30%), Gaps = 15/286 (5%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + L + K ++ + + S + + + V Q +
Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSSMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ NF ++ ++ G + + +R L+ ++KK+ + + ++
Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133
Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
+ Q + L V +++ + S L P
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNEYIGSVSLCFPYN 186
Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L N + SE+ + +++ I ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDIGDDSEEFTKKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
G VI + + + Y+ G + ++I D + +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292
>gi|255305298|ref|ZP_05349470.1| putative flagellar motor switch protein [Clostridium difficile ATCC
43255]
Length = 293
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 87/286 (30%), Gaps = 15/286 (5%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ + L + K ++ + ++ S + + + V Q +
Sbjct: 16 SRENLTCLNFLLAEFCKKYKNYIIYELKCNSNMVVDSIDQVNYQTFLDRVTSSCVVVQNA 75
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ NF ++ ++ G + + +R L+ ++KK+ + + ++
Sbjct: 76 MEPVMKNFSFRIDRSVADMWIDITSGGTGVV--KDNDRELTELDKKVLLHLMDDLVRNMH 133
Query: 148 --QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM-TIENVASSFVLIIPQE 204
+ Q + L V +++ + S L P
Sbjct: 134 LFEGFENIQVLD-----THTHINLP--QLCSPTAPVCVVDLKVLNDNECIGSVSLCFPYN 186
Query: 205 TLLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
L N + SE+ + +++ I ++D++ L++
Sbjct: 187 GLEALLESISVIEFFDNDVGDDSEEFTQKIYNSVSNIELSVIAEIGKVSINVEDLLKLEV 246
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
G VI + + + Y+ G + ++I D + +
Sbjct: 247 GDVIVTNKKINDYIDIFVENSKSYTATPGFISSKKGVKINDAVGKE 292
>gi|103488406|ref|YP_617967.1| surface presentation of antigens (SPOA) protein [Sphingopyxis
alaskensis RB2256]
gi|98978483|gb|ABF54634.1| surface presentation of antigens (SPOA) protein [Sphingopyxis
alaskensis RB2256]
Length = 312
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 30/273 (10%), Positives = 75/273 (27%), Gaps = 9/273 (3%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
S+ + + L + + V + + + F+ + +F +
Sbjct: 40 PALESVANQFARSLRDLVRALGAPGVQVERSGAEQLSFAEWSGA-AAPAIFWRYHAPPLK 98
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
I + L++ L++ G + + L+ E + A R I +
Sbjct: 99 GPLLIAAARPLLLQLVDIFYGGRGQLGGERE--ELTDAEDRFAARLGRDIGMQIAAAWRD 156
Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI-IPQETLLKT-T 210
P L+ K +++ + + + + P L
Sbjct: 157 KLVIEPELD--CVTGDPAKLAAVRADDELFVQRFTLRGAPLDGRTIACAYPVAALRGIAG 214
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
L + + + + + + + +L ++ L++G +IP
Sbjct: 215 DELLPDMQGGNGGDPAWTGALDKALRGVRLPVRSVLARPEISLVKLLALEVGDIIPLSMP 274
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
G+ +G N I I
Sbjct: 275 RHVPVT--VAGRSFAFGSIGEANGNAAILIDHI 305
>gi|253681944|ref|ZP_04862741.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
str. 1873]
gi|253561656|gb|EES91108.1| flagellar motor switch phosphatase FliY [Clostridium botulinum D
str. 1873]
Length = 394
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/367 (11%), Positives = 107/367 (29%), Gaps = 64/367 (17%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+S +N + + + + +G + + V+I+
Sbjct: 29 SDESTEENVKDVENAQES---SEDKITDIEMDLLGEIGNISMGSASTALSTIIGNVVNIT 85
Query: 62 YTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + ++F+ S + + ++G
Sbjct: 86 TPQVSSTTLEKLRNTFEVPNIALEVKYTSGIVGGNLLVMKIPDAAVIANLMMGGDGRIEE 145
Query: 121 QLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ L+ +E+ + I + + S SP + + +
Sbjct: 146 KS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVNISPPVYKIWKDTSMPLCETIK 202
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFA- 232
N+ + ++ +TI + V S+ + I P +T K I + + ++ QS +
Sbjct: 203 ENDDIIKVSFKLTIGDLVDSNIMQIFPIKTAKKIVSIMMGQEEKGEAVEQSSNKTQQINK 262
Query: 233 -------------------------------------------------RKTYQLNVNID 243
+ + I
Sbjct: 263 MQNQETSSNSQVEPKPVETYTKSQPQVNIQKASFAPLQESNINGAPQNIDLILDVPLEIS 322
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ K ++KD++ L G +I + + NGK+I E+ V +N+ +RI +
Sbjct: 323 VVLGKTKKSIKDILALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIVNI 382
Query: 304 INFDQKS 310
++ +++
Sbjct: 383 VSGEERV 389
>gi|114706761|ref|ZP_01439661.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
gi|114537709|gb|EAU40833.1| hypothetical protein FP2506_18134 [Fulvimarina pelagi HTCC2506]
Length = 321
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 42/318 (13%), Positives = 109/318 (34%), Gaps = 14/318 (4%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
T+P + RL + + +++ + L V +++ + G
Sbjct: 7 GTAPSD--IGKRLKSASELEPSKLHRLAAIVEETAEELTLALNRLSIDKVAVTFRDFEMG 64
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
+ + I ++ +F+ + + ++ L + GA + + R+L+
Sbjct: 65 QGADGIGDAGDDVLFATLTSKRFGRPAYLAAPETLADVCISAYFGA--KPAERAGKRALT 122
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+++ L K T + E+ F + + L + + ++ +
Sbjct: 123 DLDRALVKTTFKTFVETFASAFAPIDEAGLAAGGFVECEELDELLGGPNAGRYVSMTFGL 182
Query: 189 -TIENVA--------SSFVLIIPQETL-LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
+ + S+ L +P L L ++S + E + R +
Sbjct: 183 SKAGDRSATAEEEPLSTLTLALPSSYLSLHRRVLSEPLPLPQPSPDETWSEAMVRNFEKS 242
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
++++ + K+ L +V ++GQ + L GK I+ ++G +Y
Sbjct: 243 GLHLEAVLARKQVPLAEVAHFRVGQTLALDVMVSELITLECEGKPIFKSQVGFSRGSYVA 302
Query: 299 RITDRINFDQKSLKNFLH 316
R + ++ Q+ + L
Sbjct: 303 RFEEAVDPTQEFINGILS 320
>gi|91792689|ref|YP_562340.1| flagellar motor switch protein FliM [Shewanella denitrificans
OS217]
gi|91714691|gb|ABE54617.1| flagellar motor switch protein FliM [Shewanella denitrificans
OS217]
Length = 190
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 6/143 (4%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + L M ++S Q KF
Sbjct: 35 YDFSSQDRIVRG------RMPTLEIVNERFARHLRISMFNMMRRAAEVSINGVQMLKFGE 88
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+H+ + S I LV L++N G ++ R + E+
Sbjct: 89 YVHTLFVPTSLNMVRFSPLKGTALITMEARLVFILVDNFFGGDGRFHAKIEGREFTPTER 148
Query: 133 KLAKRTIAQISAVLNQCISTTQE 155
++ + + I + + +
Sbjct: 149 RIVQLLLKIIFEDYKEAWAPVMD 171
>gi|15639707|ref|NP_219157.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025945|ref|YP_001933717.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
gi|973195|gb|AAB00544.1| FliY [Treponema pallidum]
gi|3323022|gb|AAC65686.1| flagellar motor switch protein (fliY) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018520|gb|ACD71138.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
SS14]
gi|291060084|gb|ADD72819.1| flagellar motor switch protein [Treponema pallidum subsp. pallidum
str. Chicago]
Length = 348
Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 34/332 (10%), Positives = 96/332 (28%), Gaps = 44/332 (13%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
P A +G G ++ S + V IS +
Sbjct: 26 PAAGASFSGG-GLSSAQSELLQSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFS 84
Query: 75 HSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
+ V + ++ + + L+ + SHE Q+ + LS V +
Sbjct: 85 RVIPDMLVATVIDFEGEFAGDHLFLMAPEFAQKLVNLV---SHEDNDQIDDMGLSVVSET 141
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
+ + AQ+S + + + + K R + + + ++
Sbjct: 142 ITQYVSAQLSTL------EARNVQNVSVAPAESVQVPKAMVRFPPQRLCVFTYTVELDGT 195
Query: 194 ASSFVLIIPQETLLKTTLISL-SSQNKSENQSEDLIDPFARK------------------ 234
+ + ++ ++ +++ + Q + +
Sbjct: 196 SYTLWELVSEQLMVRIIERMGGAMQRPQAQVGNSQMGGVNMQMGIGAASPSVQSVQFHPL 255
Query: 235 --------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ + + + + +KD++ + G +I + N
Sbjct: 256 QNAAGGAEQGNIGLIMDVFMEVTVELGRTRMMIKDILGMGEGHIIELDKLAGEPVDILVN 315
Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
K I E+ + +N+ +R+T+ ++ ++
Sbjct: 316 HKLIAKGEVVVIDENFGVRVTEILSPGERIAD 347
>gi|255521671|ref|ZP_05388908.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J1-175]
Length = 213
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 3/204 (1%)
Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
I +I + E L G + + R LS E+ K + + L +
Sbjct: 1 MIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEALKDSFKSVHP 59
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
SP + + N+ + +++++ E S+ + +P ++ + +
Sbjct: 60 ISPEIVNIET--NPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLEN 117
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ ++ + ++ +Q+ R+ KTT K++ L++G V+ +
Sbjct: 118 VVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTL 177
Query: 276 ILSANGKEIYSCELGRVGKNYTIR 299
K + C +G+ G ++
Sbjct: 178 KGYVTEKWKFECYMGKSGNQKAVK 201
>gi|24496481|gb|AAN60222.1| FliY/N [Fervidobacterium sp. YNP]
Length = 366
Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats.
Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 56/351 (15%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
LL ++ + +G + + VDIS + +
Sbjct: 13 DALLKQVVQDEELSDIEISMVGEVGNIILGAGATALSNILGRKVDISTPEVEVMTLRELR 72
Query: 75 HSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNRSLSTVEK 132
V + L L + ++G + +L LS V +
Sbjct: 73 KGISGEKVCVTIHFEGEVEGLNALVLEKQLAAELADIMMGGLGKPESDELDEFKLSAVGE 132
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNEFVTTINMNMTI 190
+ + + L+ I +P + +D + +K N+ V MTI
Sbjct: 133 A-MNQMMGSAATSLSDMIKKPVSITPPTTEILNFDDESVKFPPIGDENDKVAKATFTMTI 191
Query: 191 ENV-ASSFVLIIPQE-------------TLLKTTLISLSSQNKSENQSE----------- 225
E + + F L +P T+ + + + + S+
Sbjct: 192 EGLQPAKFFLAMPISFVKKLYELIFGTPTVEQKQASAPAPGTDQTSASKPTSFVPPTPKR 251
Query: 226 -----------------------DLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTL 259
+ + + +N+ + K LK+++ L
Sbjct: 252 EEKQAVAARPVQFEDFGRTQQPSEKPQILDERLQLLFDVPLNVTVELGRTKLALKEIMEL 311
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+G +I + N K I E+ + +N+ +RIT+ +N ++
Sbjct: 312 GVGSLIELDKLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVNPKERL 362
>gi|295706273|ref|YP_003599348.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
gi|294803932|gb|ADF40998.1| flagellar motor switch protein FliN [Bacillus megaterium DSM 319]
Length = 385
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 33/333 (9%), Positives = 94/333 (28%), Gaps = 52/333 (15%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ VDI+ + + F
Sbjct: 51 KDALGEIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTNEFPNPHVAVQVQYTEG 110
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+S + + + + +LG + E ++ + + ++ + + + ++
Sbjct: 111 FSGTNLLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQMMGSAATSMSTVF 170
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D +I + ++ ++ N+ + + S+ + ++
Sbjct: 171 QKKIDISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSL 230
Query: 210 TLISLSSQNKSENQSEDLIDPFARK----------------------------------- 234
L + S + K
Sbjct: 231 VEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPVHVPVDVQPASFSEF 290
Query: 235 ---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ + + + K T+++++ L G +I +
Sbjct: 291 EHMSSPQGNSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILI 350
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
N K I E+ + +N+ +R+TD I+ + K
Sbjct: 351 NSKLIAKGEVVVIDENFGVRVTDIISQKDRINK 383
>gi|260893848|ref|YP_003239945.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
degensii KC4]
gi|260865989|gb|ACX53095.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Ammonifex
degensii KC4]
Length = 360
Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/315 (10%), Positives = 90/315 (28%), Gaps = 36/315 (11%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA-SL 88
+ +G + E + V I+ Q ++ SF ++
Sbjct: 39 EEKDALGEIGNIAMGAAATALSEILGRRVTITSPHVQVTTKEELLKSFTVPYLIVSVPYT 98
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + ++G + P L +S V + + + + L
Sbjct: 99 EGLEGLSLLVVKVEDASVIADLMMGGEGKRSPTLGEIEISAVAEA-MNQMMGAAATSLAD 157
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLL 207
T +P + + + + + I+ MTIE++ + + ++ T
Sbjct: 158 IYHRTVGIAPPQVRIFSKEGEAATNDLGVEDPIAVISFRMTIEDLLDTEIMRVLSVSTAK 217
Query: 208 KTTLISLSSQNKSENQSED--------------------------------LIDPFARKT 235
+ + E + E
Sbjct: 218 EEASLLWQGVYGEEEKREKPYSEKPSPAEEAAATAAPAVTPSSPAPPPLDVDRSRL-ELI 276
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + + + +K+++ L G ++ + NG + E+ V +N
Sbjct: 277 LDIPLKVSVVLGRTRRPIKEILGLGPGSILELDALADEPVEILVNGVLVARGEVVVVEEN 336
Query: 296 YTIRITDRINFDQKS 310
+ +RIT + ++
Sbjct: 337 FGVRITSIVTPQERL 351
>gi|325288786|ref|YP_004264967.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
8271]
gi|324964187|gb|ADY54966.1| CheC, inhibitor of MCP methylation [Syntrophobotulus glycolicus DSM
8271]
Length = 373
Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 115/355 (32%), Gaps = 55/355 (15%)
Query: 10 TSPLHPILLARLT--GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ P + +T + + + + V+I+
Sbjct: 16 SGPADDMEQEEITQKFLEEISSLERDALGEIANISMGTAATTLSQLVGRKVEITTPKVDI 75
Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI-PQLYNR 125
++ + + + + + + + S + +++ ++G S ++ +L +
Sbjct: 76 TTPREVLDEYPVPYVLIAVSYKKGITGSNMLILSRSDGSIIVDLMMGGSGQSPYEELTDL 135
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTT 183
+S + + + + + ++ S+T + +P + + T+ NE V
Sbjct: 136 QVSGISEA-MNQMMGSAATSMSTMFSSTVDITPPNVIITKEGEEDAFLQTDIDPNEPVVK 194
Query: 184 INMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA---------- 232
I+ M IE V S+ + +IP T L++Q + ++ E +
Sbjct: 195 ISFKMNIEGVLDSTLLQVIPLSVAKNMTERLLNNQPEPQSGPEARQEREYHSEPPLSPPP 254
Query: 233 -------------------------------------RKTYQLNVNIDTRINLKKTTLKD 255
+ + + + + T+KD
Sbjct: 255 DIFWQQQSSMSSQSTPVQPAQFSQLVTGNHPAIPNNLDLIFDVPLQVSVELGKANKTIKD 314
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
++ L G V+ + NGK I CE+ + + + IRIT+ IN Q+
Sbjct: 315 ILELGPGSVVELDRIAGEPVDMIVNGKLIAKCEVVVINETFGIRITEIINQAQRM 369
>gi|294500927|ref|YP_003564627.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
gi|294350864|gb|ADE71193.1| flagellar motor switch protein FliN [Bacillus megaterium QM B1551]
Length = 385
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/333 (9%), Positives = 93/333 (27%), Gaps = 52/333 (15%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ VDI+ + F
Sbjct: 51 KDALGEIGNISFGSSATALSALLNQKVDITTPFVSLVYKEELTDEFPNPHVAVQVQYTEG 110
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+S + + + + +LG + E ++ + + ++ + + + ++
Sbjct: 111 FSGTNLLVIKHEDAAVISDLMLGGTGENPTEIMDEIKLSAVQEAMNQMMGSAATSMSTVF 170
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D +I + ++ ++ N+ + + S+ + ++
Sbjct: 171 QKKIDISPPSLDILNIQKGEGTELIPQDDVFVKVSFNLKVGTLIDSNIMQLLSISFAKSL 230
Query: 210 TLISLSSQNKSENQSEDLIDPFARK----------------------------------- 234
L + S + K
Sbjct: 231 VEELLVPSAEDTAASIEKESDLNEKQTEPPAAEYIQHEETQQAEPGHVSVDVQSASFAEF 290
Query: 235 ---------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ + + + K T+++++ L G +I +
Sbjct: 291 EHVSSPQGDSRNLDMLLDIPLQVTVELGRTKRTVQEILALSSGAIIELDKLAGEPVDILI 350
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
N K I E+ + +N+ +R+TD I+ + K
Sbjct: 351 NSKLIAKGEVVVIDENFGVRVTDIISQRDRINK 383
>gi|163789667|ref|ZP_02184105.1| flagellar motor switch protein [Carnobacterium sp. AT7]
gi|159875199|gb|EDP69265.1| flagellar motor switch protein [Carnobacterium sp. AT7]
Length = 360
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/334 (11%), Positives = 100/334 (29%), Gaps = 52/334 (15%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+T I +G + + ++ V I+ + KF II + V +
Sbjct: 31 DQTQVDIIGEIGNISMSQAATTLSDILNHRVTITTPVVSTLKFQEIIDASVTPKVVTTIE 90
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQI 142
+ + + I + + ++ N+ + +E + +
Sbjct: 91 FKKGLEGSNLLMMNERDAIIIADLMMDGDG----NPENKEFTELELSAVGEAMNQMMGSA 146
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
+ + + + P + + + V I MT+ + + S + +
Sbjct: 147 ATAMATMLERIVDILPPDVEVWKDQNNVTYDRISGDTMVCKIAFQMTVGDFIESEIMQVF 206
Query: 202 PQETLL---------------------------KTTLISLSSQNKSENQSEDLIDPFARK 234
+T+ + ++ + F
Sbjct: 207 TLDTVRNISKIVLADEGEVIQDRQLPQAEEMTAPIAPAANQPTQETAGKIGIQKPEFQEL 266
Query: 235 --------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ + + K T+KD+++L G V+ + N
Sbjct: 267 THAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVN 326
Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
GK I E+ + +++ IRIT+ ++ +Q+ +K+
Sbjct: 327 GKLIAEGEVVVINESFGIRITNILSKEQR-IKHL 359
>gi|213612309|ref|ZP_03370135.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 147
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 3/144 (2%)
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK-SEN 222
++ N N+ V ++ I N+ F + +P + + ++ + S +
Sbjct: 2 SEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNICLPFSMIEPLRELLVNPPLENSRH 61
Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
+ ++ D R+ + + L ++ LK G V+P I +G
Sbjct: 62 EDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIAHVDGV 119
Query: 283 EIYSCELGRVGKNYTIRITDRINF 306
+ + + G V Y +R+ IN
Sbjct: 120 PVLTSQYGTVNGQYALRVEHLINP 143
>gi|154250206|ref|YP_001411031.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
Rt17-B1]
gi|154154142|gb|ABS61374.1| CheC, inhibitor of MCP methylation [Fervidobacterium nodosum
Rt17-B1]
Length = 357
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 45/342 (13%), Positives = 104/342 (30%), Gaps = 47/342 (13%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
LL +LT + + + +G + + VDIS + +
Sbjct: 13 DALLGQLTSEESLTDIEKDMIGEVGNIILGSGATALSSILGRKVDISTPEVEVKTLKDLR 72
Query: 75 HSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEK 132
V + + + ++G + +L LS V +
Sbjct: 73 SEVSGEKVTVIIHFEGAVEGLNALVLEKKTAAEIADIMMGGLGKVESDELDEMKLSAVGE 132
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK--KNTNRLSNEFVTTINMNMTI 190
+ + + L+ I + +P + + D + + V +N M+I
Sbjct: 133 A-MNQMMGSAATSLSDMIKKSVNITPPTIEILNFDNAETKFPPIGEDADKVAKVNFTMSI 191
Query: 191 ENVA-SSFVLIIPQETLLKTTLISLSSQNKSENQSE------------------------ 225
E++ + F L +P + K + K S+
Sbjct: 192 EDLEPAKFFLAMPIPFVKKMYEMIFGKTEKQTATSQTQKTPTQSVPSPSIPKEKTAVAAK 251
Query: 226 --------------DLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ + + +N+ + K +LK+++ L +G +I
Sbjct: 252 PVQFEDFGKVPSAQEQTQVIDERLQLLFDIPLNVSVELGRTKLSLKEIMELGVGSLIELD 311
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K I E+ + +N+ +RIT+ ++ ++
Sbjct: 312 KLTGEPVDIYVNNKLIARGEVVVIDENFGVRITEIVSPKERL 353
>gi|221639608|ref|YP_002525870.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides KD131]
gi|221160389|gb|ACM01369.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides KD131]
Length = 331
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+L R + + G L + ++ L +D+ C + ++
Sbjct: 17 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 74
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ ++ I + L+ L+E P R S + +
Sbjct: 75 MPEDLSFYAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 132
Query: 136 KRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
+ I + A L+ + + + +D + L + V +++ +
Sbjct: 133 QDFIDRALAELDLLLIEDEDRVWAGGFRYASFLDDPRPLGLLLEDCPYRVLVAEVDLALG 192
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+L +P + + L Q+++ D A + ++ ++ +
Sbjct: 193 AKTGQLLLAVPADG--RGELPHHGGQDEAPPPLSDFGAAMAEQVMAVDCRLEAVLGRITL 250
Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
L V+ + G +P + +G + LG+ +R+
Sbjct: 251 PLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 300
>gi|118444449|ref|YP_877942.1| flagellar motor switch protein [Clostridium novyi NT]
gi|118134905|gb|ABK61949.1| flagellar switch protein FliY, contains CheC-like domain
[Clostridium novyi NT]
Length = 396
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/370 (11%), Positives = 106/370 (28%), Gaps = 64/370 (17%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
+ +N S + + T + +G + + V+I+
Sbjct: 25 TQEQSQENVSNVSDETKVDEKKESPITDTERDLLGEIGNISMGSASTALSTIIASAVNIT 84
Query: 62 YTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
+ + +F+ S + + ++G +
Sbjct: 85 TPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGNLLVMKIPDAAVIANLMMGGDGKIEE 144
Query: 121 QLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ L+ +E+ + I + + SP + + L + +
Sbjct: 145 KS---ELTEIEESAVSEAMNQMIGSAATSMATMFGREVNISPPISKIWKDAALPLSESIS 201
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP---FA 232
E + ++ +TI + V S+ + I+P +T K I + + + + + +
Sbjct: 202 EEEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIVSIMMGEEEEDMQLNPKVEERPVNIK 261
Query: 233 RKTYQLN----------------------------------------------------V 240
+ +
Sbjct: 262 SDLNKAPQQIDPKPAETYTQPQNSVPQSQVSVQRANFAPLDQNPISGVPQNIDLILDVPL 321
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + K ++K+V+ L G +I + + NGK+I E+ V +N+ +RI
Sbjct: 322 EISVVLGKTKKSIKEVLDLGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRI 381
Query: 301 TDRINFDQKS 310
++ +++
Sbjct: 382 VSIVSGEERV 391
>gi|153941303|ref|YP_001392021.1| flagellar motor switch protein [Clostridium botulinum F str.
Langeland]
gi|152937199|gb|ABS42697.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
Langeland]
gi|295320036|gb|ADG00414.1| flagellar motor switch protein FliN [Clostridium botulinum F str.
230613]
Length = 386
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ SP L + +E V ++ ++ I V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
K I + ++ ++ Q P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMIYEKPIEREAPKVEV 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|168183193|ref|ZP_02617857.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
gi|237796178|ref|YP_002863730.1| flagellar motor switch protein [Clostridium botulinum Ba4 str. 657]
gi|182673687|gb|EDT85648.1| flagellar motor switch protein FliN [Clostridium botulinum Bf]
gi|229260911|gb|ACQ51944.1| flagellar motor switch protein FliN [Clostridium botulinum Ba4 str.
657]
Length = 386
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ SP L + +E V ++ ++ I V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
K I + ++ ++ Q P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|170758303|ref|YP_001788059.1| flagellar motor switch protein [Clostridium botulinum A3 str. Loch
Maree]
gi|169405292|gb|ACA53703.1| flagellar motor switch protein FliN [Clostridium botulinum A3 str.
Loch Maree]
Length = 386
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ SP L + +E V ++ ++ I V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
K I + ++ ++ Q P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSIRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|168180851|ref|ZP_02615515.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
2916]
gi|182668255|gb|EDT80234.1| flagellar motor switch protein FliN [Clostridium botulinum NCTC
2916]
Length = 386
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ SP L + +E V ++ ++ I V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
K I + ++ ++ Q P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPAKAVEAPKQEMVYEKPIEREAPKVEV 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|187778683|ref|ZP_02995156.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
15579]
gi|187772308|gb|EDU36110.1| hypothetical protein CLOSPO_02278 [Clostridium sporogenes ATCC
15579]
Length = 390
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 46/368 (12%), Positives = 108/368 (29%), Gaps = 65/368 (17%)
Query: 3 GQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISY 62
G + L L +K + +G + ++ V+I+
Sbjct: 23 GSQEEEEKKEATDTELPELPDLTDLEK---DLLGEVGNISMGSASTALSTIINQQVNITT 79
Query: 63 TSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQ 121
+ SF+ S + + + ++G + +
Sbjct: 80 PVVSVTTLERLKDSFEIPNIALEVKYTSGIVGENLLVMKIDDAAVISNLMMGGNGIVEGE 139
Query: 122 LYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
+ + LS +E + I + + + SP L +
Sbjct: 140 I--KELSEIEISAVSEAMNQMIGSAATSMATMFAREVNISPPLSKIWSDLTAPLAEGISD 197
Query: 178 NEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQN------------------ 218
+E V ++ ++ I V S+ + ++P +T K I + ++
Sbjct: 198 DEPVVLVSFSLNIGELVDSNIMQLLPMKTAKKIVAIMMGEESMDEPSVENNSTPAPIVEE 257
Query: 219 -------KSENQSEDLIDPFARK-----------------------------TYQLNVNI 242
++ Q P R+ + + I
Sbjct: 258 KKSAKAVEAPKQEIVYEKPIEREAPKVEVKQASFEPLSVRESATTMPNNIDLILDVPLQI 317
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ K +KD++ L G +I + + NGK++ E+ V +N+ +RIT+
Sbjct: 318 SVVLGRTKMNVKDILNLGNGSLIELDKLAEEPVEIQVNGKKVAYGEVVVVDENFGVRITN 377
Query: 303 RINFDQKS 310
++ ++
Sbjct: 378 IVSSQERI 385
>gi|148380701|ref|YP_001255242.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
ATCC 3502]
gi|153932820|ref|YP_001384985.1| flagellar motor switch protein [Clostridium botulinum A str. ATCC
19397]
gi|153937794|ref|YP_001388455.1| flagellar motor switch protein [Clostridium botulinum A str. Hall]
gi|226950155|ref|YP_002805246.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
Kyoto]
gi|148290185|emb|CAL84304.1| flagellar motor switch protein FliY [Clostridium botulinum A str.
ATCC 3502]
gi|152928864|gb|ABS34364.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
ATCC 19397]
gi|152933708|gb|ABS39207.1| flagellar motor switch protein FliN [Clostridium botulinum A str.
Hall]
gi|226842392|gb|ACO85058.1| flagellar motor switch protein FliN [Clostridium botulinum A2 str.
Kyoto]
Length = 386
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 41/339 (12%), Positives = 100/339 (29%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP--- 202
+ SP L + +E V ++ ++ I V SS + ++P
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 203 -----------QETLLKTTLISLSSQNKSENQSED-----------LIDPFARK------ 234
+ + + S + E + P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSSQASTVEEKKPTKAVEAPKQEIVYEKPIEREAPKVEI 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|322807052|emb|CBZ04626.1| flagellar motor switch protein FliN [Clostridium botulinum H04402
065]
Length = 386
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEV--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ SP L + +E V ++ ++ I V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
K I + ++ ++ Q P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKVVEAPKQEMVYEKPIEREAPKVEV 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|170756013|ref|YP_001782349.1| flagellar motor switch protein [Clostridium botulinum B1 str. Okra]
gi|169121225|gb|ACA45061.1| flagellar motor switch protein FliN [Clostridium botulinum B1 str.
Okra]
Length = 386
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 103/339 (30%), Gaps = 62/339 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + ++ V+I+ + +SF+ S
Sbjct: 45 KDLLGEVGNISMGSASTALSTIINQQVNITTPVVSVTTLERLKNSFEIPNIALEVKYTSG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISAVL 146
+ + + ++G + ++ + LS +E + I + +
Sbjct: 105 IVGENLLVMKIDDASVISNLMMGGNGIVEGEI--KELSEIEISAVSEAMNQMIGSAATSM 162
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ SP L + +E V ++ ++ I V SS + ++P +T
Sbjct: 163 ATMFAREVNISPPLSKIWSDLTAPLAEGISDDEPVVLVSFSLNIGELVDSSIMQLLPMKT 222
Query: 206 LLKTTLISLSSQN-------------------------KSENQSEDLIDPFARK------ 234
K I + ++ ++ Q P R+
Sbjct: 223 AKKIVAIMMGEESMDEPSVENNSTQASTVEEKKPAKAVEAPKQEIVYEKPIEREAPKVEV 282
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + I + K +KD++ L G +I
Sbjct: 283 KQASFEPLSVRESATTMPNNIDLILDVPLQISVVLGRTKMNVKDILNLGNGSLIELDKLA 342
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK++ E+ V +N+ +RIT ++ ++
Sbjct: 343 EEPVEIQVNGKKVAYGEVVVVDENFGVRITSIVSSQERI 381
>gi|229544405|ref|ZP_04433463.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
coagulans 36D1]
gi|229324890|gb|EEN90567.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
coagulans 36D1]
Length = 368
Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 28/361 (7%), Positives = 101/361 (27%), Gaps = 54/361 (14%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G + ++ S + + + +G + + V+I
Sbjct: 11 LNGTANLEDASAKDSLRVEDYLDSMERDA-----LGEIGNISFGSSATALSTLLSQKVEI 65
Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + F +S + + + + +LG + E
Sbjct: 66 TTPEVSIVRHDKLADEFPHPYVAIQVKYTEGFSGVNVLVIKQSDAAIIADLMLGGTGENP 125
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + ++ + + + ++ + + SP +I + +
Sbjct: 126 SSELDEIHLSAVQEAMNQMMGSAATSMSTVFNKRIDISPPAVSLLNILEGEGTDKLPDQD 185
Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLL--------KTTLISLSSQNKSENQSEDLIDP 230
+ ++ + I + + S + ++P + + + +++
Sbjct: 186 LLVKVSFRIMIGSLIDSQIMQLLPLSFAKKLARDLIHPEQPAEAEKKAEEKQPDQNMRGH 245
Query: 231 FARK---------------------------------------TYQLNVNIDTRINLKKT 251
A K + + + +
Sbjct: 246 AAEKPAEPAQNAAKQEMYQNVQPAVFTSFEETAPRVETKNLDMLLDIPLEVTVELGRTSK 305
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
T+++++ + G ++ + N + I E+ + +N+ +R+TD ++ +
Sbjct: 306 TVREILEMGAGSIVELDKLAGEPVDILINHQLIAIGEVVVIDENFGVRVTDIVSQKDRLK 365
Query: 312 K 312
K
Sbjct: 366 K 366
>gi|207109404|ref|ZP_03243566.1| flagellar motor switch protein FliM [Helicobacter pylori
HPKX_438_CA4C1]
Length = 193
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 2/162 (1%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K+ P + L K + S+ + L M V+I S
Sbjct: 28 KDIIPQRSVTLYDFKRPNRVSKEQLRSFRSIHDKMARNLSSQISSIMRSIVEIQLHSVDQ 87
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + S F+ S+ + + ++ +++ LLG Q NR
Sbjct: 88 MTYGEFLMSLPSPTSFNVFSMKPMGGTGVLEINPSIAFPMIDRLLGGKGSAYDQ--NREF 145
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
S +E L + Q+ +L + S E P ++ +
Sbjct: 146 SDIELNLLDTILRQVMQILKEVWSPVVEMFPTIDAKESSANV 187
>gi|332558593|ref|ZP_08412915.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides WS8N]
gi|332276305|gb|EGJ21620.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides WS8N]
Length = 323
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+L R + + G L + ++ L +D+ C + ++
Sbjct: 9 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ + I + L+ L+E P R S + +
Sbjct: 67 MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124
Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
+ I + A L+ + ++ + +D + L + V + + +
Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ +L +P + + SQ+++ D A + ++ ++ +
Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAPPPLTDFGAALAEQVMAVDCRLEAVLGRITL 242
Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
L V+ + G +P + +G + LG+ +R+
Sbjct: 243 PLAQVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292
>gi|257871320|ref|ZP_05650973.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
gi|257805484|gb|EEV34306.1| flagellar motor switch protein [Enterococcus gallinarum EG2]
Length = 352
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 105/323 (32%), Gaps = 39/323 (12%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+++ I +G + +DL V I+ KF I++ V +
Sbjct: 26 EEQVKVDIIGEVGNISMSQAATTLSSILDLRVSITTPRVSKIKFGEILNDLVAPKVATTV 85
Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
+ + I + + ++G + E + + + + I S
Sbjct: 86 EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGEPTNTQFTELELSAVAEAMNQMIGTASTS 145
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQE 204
+ IS + P + ++ + + + E + I+ ++ +E + S + I
Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDP 205
Query: 205 TLLKTTLISLS---------------------------SQNKSENQSEDLIDPFA----- 232
+ LS + +K S+ A
Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPKPEPEAASKPVEVSKPAFQTLASSGVN 265
Query: 233 -----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ +++ + K T+KD+++ G VI + NGK I +
Sbjct: 266 DGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATG 325
Query: 288 ELGRVGKNYTIRITDRINFDQKS 310
E+ + +N+ +RIT+ ++ Q+
Sbjct: 326 EVVVINENFGVRITNILSQKQRI 348
>gi|77463738|ref|YP_353242.1| flagellar switch protein FliM [Rhodobacter sphaeroides 2.4.1]
gi|77388156|gb|ABA79341.1| possible flagellar switch protein FliM [Rhodobacter sphaeroides
2.4.1]
Length = 323
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 11/290 (3%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+L R + + G L + ++ L +D+ C + ++
Sbjct: 9 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ + I + L+ L+E P R S + +
Sbjct: 67 MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124
Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
+ I + A L+ + ++ + +D + L + V + + +
Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ +L +P + + SQ+++ D A + ++ ++ +
Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAPPPLTDFGAALAEQVMAVDCRLEAVLGRITL 242
Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
L V+ + G +P + +G + LG+ +R+
Sbjct: 243 PLAQVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292
>gi|146277515|ref|YP_001167674.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145555756|gb|ABP70369.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 311
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 36/294 (12%), Positives = 97/294 (32%), Gaps = 12/294 (4%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ +L R + + L + ++ L +D++ + +
Sbjct: 1 MTDGVLRRKIEAKARPVVAQAAGAERALRLS--LARAARDAFALALDVAGLASARRSLAE 58
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
++ +E +++ + S ++ L+E P +R + +
Sbjct: 59 LLEMPEERSLYAIVE-GPGEGLGLVALSPPVLSALIEVQTIGRVSAQP-PASRKPTRTDA 116
Query: 133 KLAKRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNM 188
+ I Q A L ++ ++ + +D + L + V T+N+++
Sbjct: 117 AMVSGFIDQTLAELEVLLAEDEDRIWAGGFRYASFLDDPRPLGLLLEDCAYRVLTVNVDL 176
Query: 189 TIENVASSFVLIIPQET-LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + S +L +P E + + ++ D A + +D +
Sbjct: 177 ALGAKSGSLLLALPAEGRGEP--PLRPEAPEETGTPGSDFGLALAEQVMGAECLLDAVLA 234
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRI 300
L V+ ++G V+ ++ +G+++ LG+ IR+
Sbjct: 235 RVTLPLGTVMGWQVGDVVDLSKATLEDVAFVALDGRQVAEGRLGQHRGMRAIRL 288
>gi|311068154|ref|YP_003973077.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
gi|310868671|gb|ADP32146.1| flagellar motor switch protein [Bacillus atrophaeus 1942]
Length = 379
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/336 (9%), Positives = 99/336 (29%), Gaps = 58/336 (17%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
+G + ++ VDI+ S S I F +
Sbjct: 40 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 99
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
S + + + + + ++G + + ++ + + + ++ S
Sbjct: 100 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 159
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
+ SP + D++ K ++E + ++ + + + S+ + + P
Sbjct: 160 KKIDISPPRVELLDVNEEKGTDRIPADEMLVKVSFRLKVGELIDSNIMQLYPITFAKDLI 219
Query: 211 LISLSSQNKSENQSEDLID--------------PFARK----------------TYQLNV 240
+++ + +E+ ++ + + V
Sbjct: 220 SDLMNTGSSNEDIQQEEPEETYEAPEEAVMPEPRLESQPQPTPKRQGKPKKAAPVQVAPV 279
Query: 241 N--------------------------IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
I + K ++K+++ L G +I
Sbjct: 280 EFSAFDPNEAPQAHLNNLDMLMDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEP 339
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + + E+ + +N+ +R+TD ++ ++
Sbjct: 340 VDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375
>gi|325567499|ref|ZP_08144166.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
ATCC 12755]
gi|325158932|gb|EGC71078.1| flagellar motor switch phosphatase FliY [Enterococcus casseliflavus
ATCC 12755]
Length = 352
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/325 (13%), Positives = 106/325 (32%), Gaps = 43/325 (13%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+++ I +G + +D V I+ KF I++ V +
Sbjct: 26 EEQVKVDIIGEVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTV 85
Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
+ + I + + ++G + ET + + + + I S
Sbjct: 86 EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGETSNTQFTELELSAVAEAMNQMIGTASTS 145
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII---- 201
+ IS + P + ++ + + + E + I+ ++ +E + S ++ I
Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIKSKIMQIFTDP 205
Query: 202 ------------------------------------PQETLLKTTLISLSSQNKSENQSE 225
P T + + Q + +
Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPTPEPAATSKPVEVSKPAFQTLASSGVS 265
Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
D D + +++ + K T+KD+++ G VI + NGK I
Sbjct: 266 D-GDNL-DLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIA 323
Query: 286 SCELGRVGKNYTIRITDRINFDQKS 310
+ E+ + +N+ +RIT+ ++ Q+
Sbjct: 324 TGEVVVINENFGVRITNILSQKQRI 348
>gi|308173595|ref|YP_003920300.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens DSM 7]
gi|307606459|emb|CBI42830.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens DSM 7]
gi|328553473|gb|AEB23965.1| flagellar motor switch protein [Bacillus amyloliquefaciens TA208]
gi|328911736|gb|AEB63332.1| flagellar motor switching and energizing phosphatase [Bacillus
amyloliquefaciens LL3]
Length = 377
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/336 (8%), Positives = 92/336 (27%), Gaps = 58/336 (17%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
+G + ++ VDI+ S S I F +
Sbjct: 38 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 97
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ + + + + ++G + + ++ + + + ++ S
Sbjct: 98 DGSNLLVVEQSDAAIIADLMIGGDGQGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 157
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT- 209
+ SP + D+ K ++ + ++ + + + SS + + P
Sbjct: 158 KKIDISPPRVELLDVTEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLI 217
Query: 210 -------------------------------------TLISLSSQNKSENQSEDLIDPFA 232
Q ++ + + P
Sbjct: 218 AELMDTDQPEADETVSEPRETYETPQPEPAIQQEPQAKPELPKRQGTAKKAAPVQVAPVE 277
Query: 233 ------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ +++ + K ++K+++ L G +I
Sbjct: 278 FQAFDQNAADGHGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGEP 337
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + + E+ + +N+ +R+TD ++ +
Sbjct: 338 VDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 373
>gi|154686049|ref|YP_001421210.1| flagellar motor switch protein [Bacillus amyloliquefaciens FZB42]
gi|154351900|gb|ABS73979.1| FliY [Bacillus amyloliquefaciens FZB42]
Length = 378
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 30/337 (8%), Positives = 91/337 (27%), Gaps = 59/337 (17%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
+G + ++ VDI+ S S I F +
Sbjct: 38 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVISKSKISDEFPHPYVAIEVNYTEGF 97
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ + + + + ++G + ++ + + + ++ S
Sbjct: 98 DGSNLLVVEQSDAAIIADLMIGGDGRGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 157
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT- 209
+ SP + D+ K ++ + ++ + + + SS + + P
Sbjct: 158 KKIDISPPRVELLDVMEEKGTDRIPEDDLLVKVSFRLKVGELIDSSIMQLYPITFAKDLI 217
Query: 210 ---------------------------------------TLISLSSQNKSENQSEDLIDP 230
Q ++ + + P
Sbjct: 218 ADLMTADQHESEAAETVSEPQETYETPQPEPAMQPEPQAKPELPKRQGTAKKAAPVQVAP 277
Query: 231 FA-----------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ +++ + K ++K+++ L G +I
Sbjct: 278 VEFQAFDHNEAAQGSRNNLDMLMDIPLSVTVELGRTKRSVKEILELSAGSIIELDKLAGE 337
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + + E+ + +N+ +R+TD ++ +
Sbjct: 338 PVDILVNQRIVAKGEVVVIEENFGVRVTDILSQADRL 374
>gi|126462567|ref|YP_001043681.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
gi|126104231|gb|ABN76909.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
Length = 323
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 11/290 (3%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+L R + + G L + ++ L +D+ C + ++
Sbjct: 9 SVLRRKIEAKARPAVPQVTGAERGLRLA--LARAGRDAFALALDVPRLDCLRRSLTELLE 66
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
++ + I + L+ L+E P R S + +
Sbjct: 67 MPEDLSFHAVLE-GPGEGLGLIALAPPLLAGLVEVQTVGRVRPQP-AATRKPSRTDAAMV 124
Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIE 191
+ I + A L+ + ++ + +D + L + V + + +
Sbjct: 125 QDFIDRALAELDLLLLEDEDRVWASGFRYASFLDDPRPLGLLLEDCSYRVLVAEVELALG 184
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ +L +P + + SQ++++ D A + ++ ++ +
Sbjct: 185 AKSGQLLLAVPADG--RGERPHDGSQDEAQPPLTDFAAALAEQVMAVDCRLEAVLGRITL 242
Query: 252 TLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
L V+ + G +P + +G + LG+ +R+
Sbjct: 243 PLAHVLDWQPGDTVPLPQATLDHILFVGLDGHPVAEGRLGQHRGMRAVRL 292
>gi|148269396|ref|YP_001243856.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
gi|147734940|gb|ABQ46280.1| CheC, inhibitor of MCP methylation [Thermotoga petrophila RKU-1]
Length = 346
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/314 (12%), Positives = 103/314 (32%), Gaps = 33/314 (10%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
+ + +G + + D+ I+ + + K ++ F V +
Sbjct: 28 EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYI 87
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + LV + + ++G S E + + + + + + + L++
Sbjct: 88 EGLEGLNVLVLNKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147
Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204
+ T SP + + D + + V + + IE + S F +I +
Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEIEIEGLPKSKFYQVISAD 207
Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236
+ K Q++++ + ++
Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + + TLK V+ + G +I + NGK I E+ + +N+
Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327
Query: 297 TIRITDRINFDQKS 310
+RIT+ ++ ++
Sbjct: 328 GVRITEIVSPKERL 341
>gi|170288053|ref|YP_001738291.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga sp. RQ2]
gi|170175556|gb|ACB08608.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga sp. RQ2]
Length = 346
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/314 (12%), Positives = 101/314 (32%), Gaps = 33/314 (10%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
+ + +G + + D+ I+ + + K ++ F V
Sbjct: 28 EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYT 87
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ LV + + ++G S E + + + + + + + L++
Sbjct: 88 EGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147
Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204
+ T SP + + D + + V + M IE + S F +I +
Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPKSKFYQVISAD 207
Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236
+ K Q++++ + ++
Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + + TLK V+ + G +I + NGK I E+ + +N+
Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327
Query: 297 TIRITDRINFDQKS 310
+RIT+ ++ ++
Sbjct: 328 GVRITEIVSPKERL 341
>gi|254519439|ref|ZP_05131495.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
gi|226913188|gb|EEH98389.1| flagellar switch protein FliY [Clostridium sp. 7_2_43FAA]
Length = 370
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 39/333 (11%), Positives = 99/333 (29%), Gaps = 54/333 (16%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
+ + +G + + ++ V+I+ + I F+ + +S
Sbjct: 34 KDLLGEIGNISMGSASTALYQLINKQVNITTPKVKVTTLKEIKDGFEYPNIILDVEYVSG 93
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + ++G + + + ++ + I + +
Sbjct: 94 ITGRNILIMQTTDAAVIANLMMGGDGQVNTSELSEIEVSAVQEAMNQMIGSAATSMATMF 153
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKT 209
+ SP + + +E + + ++TIE + S+ + I+P T K
Sbjct: 154 AREVNISPPKSKIWKDMNENISETIPEDEPIVEVCFDLTIEGLLQSNMMQILPINTAKKI 213
Query: 210 TLISLSSQNKSEN--------------------------QSEDLIDPFARK--------- 234
I + + N E + K
Sbjct: 214 VSIMMGEDQEVANEIDDSYDSSDIYKEEYNIEEKPIINTVEERAVKNIVEKPVEVHGATF 273
Query: 235 -----------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + + + K ++KD++ L G +I + +
Sbjct: 274 EPLSQGVVGESHRNIDLILDVPLEVSVVLGRTKKSIKDILDLSTGSLIELDKLAEEPVEV 333
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK+I E+ V +N+ +RIT ++ +
Sbjct: 334 LINGKKIAYGEVVVVDENFGVRITSIVSGADRI 366
>gi|20807876|ref|NP_623047.1| flagellar motor switch protein [Thermoanaerobacter tengcongensis
MB4]
gi|20516440|gb|AAM24651.1| Chemotaxis protein CheC, inhibitor of MCP methylation
[Thermoanaerobacter tengcongensis MB4]
Length = 366
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 94/354 (26%), Gaps = 49/354 (13%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ + L L K + I +G + + V I+
Sbjct: 9 SQEEINALLKGLQEETQEKKELTDEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKV 68
Query: 66 QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + F +V Q + + + + ++G +
Sbjct: 69 SVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDGKVEEGEIT 128
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
+ + + I + L+ ++ SP D V +
Sbjct: 129 DLHLSAVGEAMNQMIGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVAFPQGDVVRV 188
Query: 185 NMNMTIENVA-SSFVLIIPQETLLKTTLISLSSQNK-----------SENQSEDLIDPFA 232
M + ++ S + +IP + + L + + + A
Sbjct: 189 AFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQATTSTSPPAEVKEMKKESKGESEEKMA 248
Query: 233 RK------------------------------------TYQLNVNIDTRINLKKTTLKDV 256
+ + + I + K +KD+
Sbjct: 249 SEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELGKTKKLIKDI 308
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L G +I + ANGK I E+ + +N+ +RITD ++ ++
Sbjct: 309 LELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPGKRI 362
>gi|168187523|ref|ZP_02622158.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
str. Eklund]
gi|169294558|gb|EDS76691.1| flagellar motor switch phosphatase FliY [Clostridium botulinum C
str. Eklund]
Length = 388
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 101/344 (29%), Gaps = 66/344 (19%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASL 88
T + + +G + + V+I+ + + ++F+
Sbjct: 43 TEKDLLGEIGNISMGSASTALSTIIGSAVNITTPQVSTTTLKELRNTFEVPNIALEVKYT 102
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQISA 144
S + + ++G + L+ +E+ + I +
Sbjct: 103 SGIVGGNLLVMKIPDAAVIANLMMGGDGRIEEKS---ELTEIEESAVSEAMNQMIGSAAT 159
Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203
+ SP + + + E + ++ +TI + V S+ + I+P
Sbjct: 160 SMATMFGREVNISPPVSKIWRDTSKPLSETISEEEEIVEVSFKLTIGDLVDSNIMQILPI 219
Query: 204 ETLLKTTLISLSS------------QNKSENQSEDLIDPFARK----------------- 234
+T K I + Q Q ++ + +
Sbjct: 220 KTAKKIVSIMMGEEEKQEVPQSNIHQQGEREQVQNSQEQLNKNVVPKPVETYSQPQVSSP 279
Query: 235 ----------------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ + I + K ++K+V+ L G +I
Sbjct: 280 QPQVNIQKATFAPLGESPINGAPQNIDLILDVPLEISVVLGKTKKSIKEVLELGTGSLIE 339
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK+I E+ V +N+ +RI + ++ +++
Sbjct: 340 LDKLAEEPVEIYVNGKKIAYGEVVVVDENFGVRIMNIVSGEERV 383
>gi|254478872|ref|ZP_05092236.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
gi|214035185|gb|EEB75895.1| CheC-like family protein [Carboxydibrachium pacificum DSM 12653]
Length = 366
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/354 (11%), Positives = 95/354 (26%), Gaps = 49/354 (13%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ + L L K + I +G + + V I+
Sbjct: 9 SQEEINALLKGLQEETQEKKELTDEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKV 68
Query: 66 QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + F +V Q + + + + ++G +
Sbjct: 69 SVLSWDQLKEEFNIPYVGVQVEYTEGLKGYNLLILKKEDALKITDLMMGGDGKVEEGEIT 128
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
+ + + I + L+ ++ SP D V +
Sbjct: 129 DLHLSAVGEAMNQMIGSAATSLSTLLNKKINISPPKAFIVDFSTALPEDVAFPQGDVVRV 188
Query: 185 NMNMTIENVA-SSFVLIIPQETLLKTTLISLSS-----------QNKSENQSEDLIDPFA 232
M + ++ S + +IP + + L + + + + A
Sbjct: 189 AFKMEVGDIIDSEIMQLIPFDFAKELVKSVLQQTTTSTSPPAEVKEMKKESKGESEEKMA 248
Query: 233 RK------------------------------------TYQLNVNIDTRINLKKTTLKDV 256
+ + + I + K +KD+
Sbjct: 249 SEKAIKKEEKVNVSPVIFQNFDEEPQQEAKGESKNLDLILDVPLTITVELGKTKKLIKDI 308
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L G +I + ANGK I E+ + +N+ +RITD ++ ++
Sbjct: 309 LELTEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHPGKRI 362
>gi|281411907|ref|YP_003345986.1| chemotaxis protein CheC [Thermotoga naphthophila RKU-10]
gi|281373010|gb|ADA66572.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermotoga naphthophila RKU-10]
Length = 346
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/314 (12%), Positives = 101/314 (32%), Gaps = 33/314 (10%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
+ + +G + + D+ I+ + + K ++ F V
Sbjct: 28 EEKDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREEKMKNVKSDFSGEQVVVSVEYT 87
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ LV + + ++G S E + + + + + + + L++
Sbjct: 88 EGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIKLSAVGEAMNQMMGSAATSLSE 147
Query: 149 CISTTQESSPNLEDFYDIDYLK-KNTNRL--SNEFVTTINMNMTIENVA-SSFVLIIPQE 204
+ T SP + + D + + V + M IE + S F +I +
Sbjct: 148 LLGITINISPPKVEILNFDDPSTQFPPVTDNPEKDVAVVEFEMEIEGLPKSKFYQVISAD 207
Query: 205 TLLKTTLISLSSQNKSEN----------------------------QSEDLIDPFARKTY 236
+ K Q++++ + ++
Sbjct: 208 LVKKMYEYFTKKQSEAKGSEKKEEKKEEKKVKVEPVEFAELKPSETRKTEVPSDKLELLL 267
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + + TLK V+ + G +I + NGK I E+ + +N+
Sbjct: 268 DIPLRVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVIDENF 327
Query: 297 TIRITDRINFDQKS 310
+RIT+ ++ ++
Sbjct: 328 GVRITEIVSPKERL 341
>gi|257866409|ref|ZP_05646062.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
gi|257873075|ref|ZP_05652728.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
gi|257876022|ref|ZP_05655675.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
gi|257800367|gb|EEV29395.1| flagellar motor switch protein [Enterococcus casseliflavus EC30]
gi|257807239|gb|EEV36061.1| flagellar motor switch protein [Enterococcus casseliflavus EC10]
gi|257810188|gb|EEV39008.1| flagellar motor switch protein [Enterococcus casseliflavus EC20]
Length = 352
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 45/323 (13%), Positives = 105/323 (32%), Gaps = 39/323 (12%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQA 86
+++ I +G + +D V I+ KF I++ V +
Sbjct: 26 EEQVKVDIIGEVGNISMSQAATTLSSILDRRVSITTPRVSKIKFGEILNDLVAPKVATTV 85
Query: 87 SL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
+ + I + + ++G + ET + + + + I S
Sbjct: 86 EFKEGLLGSNLMLLEVKDAIVIADLMMGGTGETSNTQFTELELSAVAEAMNQMIGTASTS 145
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQE 204
+ IS + P + ++ + + + E + I+ ++ +E + S + I
Sbjct: 146 MATMISRKVDILPPIVKLWETPENIEYSGIEAEEEIYCISFSLRVEGLIESKIMQIFTDP 205
Query: 205 TLLKTTLISLS---------------------------SQNKSENQSEDLIDPFA----- 232
+ LS + +K S+ A
Sbjct: 206 VVNDIASAMLSDEATVVTRETPTPQPTAPVAAPTPEPAAASKPVEVSKPAFQTLASSGVS 265
Query: 233 -----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ +++ + K T+KD+++ G VI + NGK I +
Sbjct: 266 DGDNLDLILDVPLDLSVVLGRSKKTIKDILSFNTGSVIELEKLTDEPLEILLNGKLIATG 325
Query: 288 ELGRVGKNYTIRITDRINFDQKS 310
E+ + +N+ +RIT+ ++ Q+
Sbjct: 326 EVVVINENFGVRITNILSQKQRI 348
>gi|160901605|ref|YP_001567186.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
mobilis SJ95]
gi|160359249|gb|ABX30863.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Petrotoga
mobilis SJ95]
Length = 372
Score = 115 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 52/346 (15%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
P + + + + + + ++I Y KF +I
Sbjct: 26 DPKESEETSTVDEKLDALLDMIGEIANITMGSGATTLSTLLRRKIEIQYPQTDIIKFKNI 85
Query: 74 IHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
I +F+ EN V + + NL + + +LG + + + R L +
Sbjct: 86 ITNFEGENVVVTVEYKKGLYGLNTLVLPLNLTNIIADLMLG---KDLENIEERELDDISL 142
Query: 133 KL----AKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNE-FVTTIN 185
+ + S L+ + T + SP + ++ E +V +I
Sbjct: 143 SAVSEAMNQMMGTASTALSDFLKTNIDISPPSSRVVNFSEANIEFPPIETDKEAYVISIK 202
Query: 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK---------- 234
N+ I + ++F IP + K + + K+ E + +K
Sbjct: 203 FNVKINGIAETTFWQFIPMKFAQKIRELVEKTFGKTTEDEESSKNSNTQKRSNSNVIKEK 262
Query: 235 ------------------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + + K L++++ L G +
Sbjct: 263 KVKVQPVEFGEFEKKEEPISPNIDLSKLELLLDVPLELKVELGSTKLNLREILELHEGSM 322
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
I + ANG+ I E+ + +N+ IR+T+ ++ ++
Sbjct: 323 IQLNKLAGEPLDIYANGRLIARGEVVVIDENFGIRVTEIVSLRERM 368
>gi|973194|gb|AAB00543.1| FliM' [Treponema pallidum]
Length = 155
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
Query: 174 NRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL---SSQNKSENQSEDLIDP 230
+E V + + + IP T+ + + + +
Sbjct: 1 IVPPSEMVVLVTLETKVGEEEGMMNFCIPYITIEPIISKLSSQFWFSSVRRSSTTQYMGV 60
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCEL 289
K +++++ + + +++D++ L++G +I +LS ++ + C+
Sbjct: 61 LRDKLSTVDMDVVAEVGSLRLSVRDILGLRVGDIIRLHDTHVGDPFVLSIGNRKKFLCQP 120
Query: 290 GRVGKNYTIRITDRINF 306
G VGK +I +RI
Sbjct: 121 GVVGKKIAAQILERIES 137
>gi|328958298|ref|YP_004375684.1| flagellar motor switching and energizing phosphatase
[Carnobacterium sp. 17-4]
gi|328674622|gb|AEB30668.1| flagellar motor switching and energizing phosphatase
[Carnobacterium sp. 17-4]
Length = 359
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/333 (12%), Positives = 99/333 (29%), Gaps = 51/333 (15%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+T I +G + + V I+ KF II + V +
Sbjct: 31 DQTQTDIIGEIGNISMSQAATTLSSILSRRVTITTPVVSCLKFQEIIDASVTPKVVTTIE 90
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL----AKRTIAQI 142
+ + + + I + + ++ + + +E + +
Sbjct: 91 FKKGLAGSNLLMMNEKDAIIIADLMMDGDGNA----EGKEFTELELSAVGEAMNQMMGSA 146
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
+ + + + P + + + V I MT+++ + S + I
Sbjct: 147 ATAMATMLERIVDILPPEVEVWKNQEQVNYDRISGDTTVCKIAFQMTVDDLIESEIMQIF 206
Query: 202 PQETLLKT--------------------------TLISLSSQNKSENQSEDLIDPFARK- 234
ET+ + + ++ + F
Sbjct: 207 TLETVRNISNIVLADEGEVITDRELPKAEEMTAPIEAVSQATSNADGKIGIQKPEFQELT 266
Query: 235 -------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ + + K T+KD+++L G V+ + NG
Sbjct: 267 HAGSLKTPRNLDLIMDVPLQFSVMLGESKKTIKDILSLGTGSVVELNKMTDEPLEIYVNG 326
Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
K I E+ + +++ IRIT+ ++ +Q+ +K+
Sbjct: 327 KLIAEGEVVVINESFGIRITNILSKEQR-IKHL 358
>gi|332981446|ref|YP_004462887.1| MCP methylation inhibitor CheC / FliN fusion protein [Mahella
australiensis 50-1 BON]
gi|332699124|gb|AEE96065.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Mahella
australiensis 50-1 BON]
Length = 366
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/357 (11%), Positives = 93/357 (26%), Gaps = 62/357 (17%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+RGQ +S +L + + +G + + V I
Sbjct: 14 LRGQQSPSQSS--DDAILTDI---------EKDALGEIGNISMGTAATTLSTLLRNKVVI 62
Query: 61 SYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + FV + V + + ++G I
Sbjct: 63 TTPRVDITTMNELGKEYPIPFVAVEVKYTQGLEGVNLLILKEEDVKLITDLMMGGDGSNI 122
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + + + + + L+ SP + SNE
Sbjct: 123 ADEISDLHLSAIGEAMNQMVGSSATSLSTMFDKNINISPPKAFVINFTDESPYDAFDSNE 182
Query: 180 FVTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF------- 231
+ I +M I + S + ++P + + L K+ +
Sbjct: 183 PLVRIAFSMEIGTLLKSEMMQLLPIDFAKELVNNLLGGAAKAPDNEPLQKQEVTQMPPIE 242
Query: 232 ------------------------------------------ARKTYQLNVNIDTRINLK 249
+ + + +
Sbjct: 243 SEKPEIKQAVVNKTESEKVVKAQPVVFQQLNNEAPEVLQGSNMNLIMDIPLQVTVELGRT 302
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
K T+KD++ L G VI + NGK + E+ + +N+ +RI + I+
Sbjct: 303 KKTVKDILELGTGSVIELDRLAGEPIDILVNGKLVARGEVIVIDENFGVRIIEMIDQ 359
>gi|24215313|ref|NP_712794.1| endoflagellar motor switch protein [Leptospira interrogans serovar
Lai str. 56601]
gi|45657248|ref|YP_001334.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24196414|gb|AAN49812.1| endoflagellar motor switch protein [Leptospira interrogans serovar
Lai str. 56601]
gi|45600486|gb|AAS69971.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 354
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 56/340 (16%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q SP+ +L+ L ++ FL + K D++
Sbjct: 33 QKEVPGMSPVDRDILSDLLASCFQVA--GNTLGAVLSRSSAFLNPNVETKTRKDIESELK 90
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S +S + S + + S + + +++G
Sbjct: 91 SGSFLLYSTLSGSV--------------NGRVVLAMSAENAVKISNSMMGG-------FD 129
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182
+ L + + + ++ + L IST N + L + E +
Sbjct: 130 SGELDEAQMQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETLI 189
Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS--------------------QNKSE 221
+ N+TIEN+ S ++ T + S S
Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSAGGDMSGMGMGGMGGMGMAPGSM 249
Query: 222 NQSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + +++ + K +KD++ L G +I
Sbjct: 250 SVKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKL 309
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L NGK I E+ + +N+ +R+TD ++ +
Sbjct: 310 AGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 349
>gi|194014995|ref|ZP_03053612.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Bacillus pumilus
ATCC 7061]
gi|194014021|gb|EDW23586.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Bacillus pumilus
ATCC 7061]
Length = 374
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 28/339 (8%), Positives = 98/339 (28%), Gaps = 56/339 (16%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ +G + ++ V+I+ + + S + F
Sbjct: 32 SAMEQDAIGEIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVN 91
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+S++ + + + ++G + + ++ + + + +
Sbjct: 92 YTEGFSASNLLVVQQTDAAVIADLMMGGDGTNADPSLSEIHLSAVQEAMNQMMGSAATSM 151
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----- 201
+ + + SP + D+ + + E + ++ + I + S ++ +
Sbjct: 152 STVFNKKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITF 211
Query: 202 ----------PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----------------- 234
P + +S+ + + P +
Sbjct: 212 AKDLIAELTDPAQEEEPVQDTQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNV 271
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ ++I + + ++K+V+ L G +I
Sbjct: 272 APVEFEAFSEPQHTTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLA 331
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + + E+ + +N+ +R+TD ++ ++
Sbjct: 332 GEPVDILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370
>gi|172057876|ref|YP_001814336.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sibiricum 255-15]
gi|171990397|gb|ACB61319.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sibiricum 255-15]
Length = 376
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 33/334 (9%), Positives = 94/334 (28%), Gaps = 55/334 (16%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+G + ++ V+I+ + + +
Sbjct: 40 IDALGEVGNISLGNSATALSALLNQKVEITTPHVRMITMEELRSRYPIPHVALRVGYTEG 99
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149
+ + + + ++G L ++ + ++ + + + ++
Sbjct: 100 FKGENVLILTQRDASVIANLMMGGDGVVDESLEMEPIALSAVQEAMNQMMGAAATSMSTV 159
Query: 150 ISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL--------- 199
S + SP +E F + E + I ++ I + S ++
Sbjct: 160 FSMRIDISPPAVEIFDFSQEKTIVDSFSLWESMVIIEFDLKIGTLIDSKIVQLAPLDFSK 219
Query: 200 ------------------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-------- 233
I P + + Q + E + E +
Sbjct: 220 QLIQKLFSASTTTTESAPIAPTSSQEPVREQPTAPQQQPEPRYEAPPEQKKEPVGVSPVQ 279
Query: 234 -----------------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Y + +N+ + + +++D++ L G +I
Sbjct: 280 FGQFSEVQQEGPPGNIGMLYDVPLNVTVELGRTRRSVRDILELTQGSIIELDKLAGEPVD 339
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N I + E+ + +N+ +RIT+ +N ++
Sbjct: 340 VFVNNTLIATGEVVVIEENFGVRITEIVNTKERL 373
>gi|183221913|ref|YP_001839909.1| flagellar motor switch protein FliY [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189911982|ref|YP_001963537.1| endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776658|gb|ABZ94959.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780335|gb|ABZ98633.1| Flagellar motor switch protein FliY [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 356
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/339 (12%), Positives = 95/339 (28%), Gaps = 58/339 (17%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
N SP+ +++ + G ++ +F+ + D+ S
Sbjct: 36 DNLSPIDRDIISDVIGSAFQVA--GNTLGTILAKNTRFMNPATESSSSADIQKELGSKSV 93
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
FS I S + + + + ++G L
Sbjct: 94 SLFSTISGS--------------LAGRVCLVMAQENAAKIAGVMMGG------MTPPGQL 133
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF-VTTINM 186
+ + K ++A I + I + + +L ++ + ++
Sbjct: 134 DNAQLQTLKDSLAPILGTVTAQIGMKLGGTMSGNPPEIALVNSGRDLQLPDDSSLVKTSL 193
Query: 187 NMTIENVAS-SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA------------- 232
++ I+ V S +I I K + QS +
Sbjct: 194 SLNIDGVGSFKVYYVIALSMANSILDIQKGGGQKPQQQSGGMNVNMQPNMGMGGGQGSVG 253
Query: 233 ---------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + + + K +KD++ L G +I
Sbjct: 254 IKGVNFPSLATAGGGPGQTNLNLLMDVQMALTVELGRTKMYIKDILGLGEGSIIELDKLA 313
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L NGK I E+ + +N+ +R+TD ++ +
Sbjct: 314 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPTDRL 352
>gi|222100880|ref|YP_002535448.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
4359]
gi|221573270|gb|ACM24082.1| CheC, inhibitor of MCP methylation [Thermotoga neapolitana DSM
4359]
Length = 344
Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/328 (12%), Positives = 106/328 (32%), Gaps = 35/328 (10%)
Query: 18 LARLTGKLGD---KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
+ +L G + + + +G + + +V+I+ + K ++
Sbjct: 12 IDKLLGGEAEGVLTPEEKDMIGEIGNIAMGSAATTLSMILGRNVNITVPMVREEKMKNVK 71
Query: 75 HSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
F V + +LV +++ ++G S E + + + +
Sbjct: 72 SDFNGEKVVVTVEYTEGLKGLNVLVLEKSLVAAIVDLMMGGSGEVESEELDEIKLSAIGE 131
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF---VTTINMNMTI 190
+ + + L++ + T SP + + D + ++ V + + I
Sbjct: 132 AMNQMMGSAATSLSELLGITVNISPPKVEILNFDDPSTKFPPVVDDPEKDVAVVEFEIEI 191
Query: 191 ENVA-SSFVLIIPQETLLKT---------------------------TLISLSSQNKSEN 222
E + S F +I + + K + S S
Sbjct: 192 EGLPKSKFYQVIGADLVKKMYEYFTRAHKEEAEEKKEEKKEEKKVKVEPVEFSELKPSGT 251
Query: 223 QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
++ + + + + + TLK V+ + G +I + NGK
Sbjct: 252 AKTEIPQDKLELLLDVPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGK 311
Query: 283 EIYSCELGRVGKNYTIRITDRINFDQKS 310
I E+ + +N+ +R+T+ ++ ++
Sbjct: 312 LIARGEVVVIDENFGVRVTEIVSPKERL 339
>gi|157692312|ref|YP_001486774.1| flagellar motor switch protein [Bacillus pumilus SAFR-032]
gi|157681070|gb|ABV62214.1| flagellar motor switch protein FliY [Bacillus pumilus SAFR-032]
Length = 374
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 28/339 (8%), Positives = 98/339 (28%), Gaps = 56/339 (16%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ +G + ++ V+I+ + + S + F
Sbjct: 32 SAMEQDAIGEIGNISFGSSATALSTLLNQKVEITTPTVTVIQKSMLNEEFPHPYVAIEVN 91
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+S++ + + + ++G + + ++ + + + +
Sbjct: 92 YTEGFSASNLLVVQQTDAAVIADLMMGGDGTNADPSLSEIHLSAVQEAMNQMMGSAATSM 151
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----- 201
+ + + SP + D+ + + E + ++ + I + S ++ +
Sbjct: 152 STVFNKKIDISPPRVELLDVKEGEGTDRIPAAEMLVKVSFRLKIGELIDSNIMQLYPITF 211
Query: 202 ----------PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----------------- 234
P + +S+ + + P +
Sbjct: 212 AKDLIAELTDPAQEEEPVQEAQVSTPEPQQAAPQTQSAPAQQAAPPKRQAKPKPAAPVNV 271
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ ++I + + ++K+V+ L G +I
Sbjct: 272 APVEFEAFSEPQHSTSQLGNLDMLMDIPLSITVELGRTQRSVKEVLELSAGSIIELDKLA 331
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + + E+ + +N+ +R+TD ++ ++
Sbjct: 332 GEPVDILVNKRIVAKGEVVVIDENFGVRVTDILSQSERL 370
>gi|258592490|emb|CBE68799.1| putative Flagellar motor switch phosphatase fliY (CheY-P
phosphatase fliY) (Flagellar motor switch protein fliY)
[NC10 bacterium 'Dutch sediment']
Length = 324
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 92/316 (29%), Gaps = 24/316 (7%)
Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENF 81
+ L + +T+ G L + ++F V + + S ++
Sbjct: 11 SASLAEVETVSSALERHGQLVFEASSQVFSVLCGRPVRLRFDRIVPVSPSTLLALLPGPC 70
Query: 82 V-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
V + + + + I L + +LG +L L + + A +
Sbjct: 71 VGMAMQASQGLVGAEHLVWRADDAIGLAQLILGEEPTPGSELSADYLDALSEA-ANQIGG 129
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVL 199
+ L + + R ++T E + + L
Sbjct: 130 SLGTALRAALGKPVTVEAGTVTALTEAGVCLAVFREEASTPLLCVASLTREGLASGEVAL 189
Query: 200 IIPQETL------LKTTLISLSSQNKSENQSEDLIDPF--------------ARKTYQLN 239
I+ L ++ ++ S PF +N
Sbjct: 190 IVSPSLLPETDKAQPHNDTLVAKEDTVSATSASAQAPFVPLTGGERVGPNNGIDMLLDVN 249
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + + ++D++ L G ++ + + N K I E+ + +N+ +R
Sbjct: 250 LQVSVELGRTRLQIRDILQLGPGSIVELDKQAGDAVDILVNDKPIAKGEVIIIDENFGVR 309
Query: 300 ITDRINFDQKSLKNFL 315
+T I +KN
Sbjct: 310 LTS-ITSVADRIKNLR 324
>gi|256370968|ref|YP_003108792.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256007552|gb|ACU53119.1| surface presentation of antigens (SPOA) protein [Acidimicrobium
ferrooxidans DSM 10331]
Length = 302
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 33/270 (12%), Positives = 88/270 (32%), Gaps = 7/270 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ ++ L + + + V + + ++ + +
Sbjct: 24 DRAEQRGLELLVENALRPAATLMGASLRRGVRLELGRMDQLPWEQVVAQQDGPALVISFA 83
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
L S + + + LL+ + R+L+ +E+ L + + + L
Sbjct: 84 LVPLGSRGVLRFGADAALRLLDLR---LGGDGSPIEPRALTELEQGLLVQVFSDLLVQLA 140
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206
+ T + L+ L+ E + + + I + + S L +P L
Sbjct: 141 SSLQTLLDV--RLDRVGAETSLEFVQVISPGEMCLVVPIALGIGDELESELTLYLPYSML 198
Query: 207 LKTTLISLSSQNKSENQSED-LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + ++ D D A + + + + + R + + ++ L G V+
Sbjct: 199 RPVVELIAQRAIVAVDRGGDTFRDLLAARLHDVRLEVSVRFEPTSISSRTLLELAPGDVV 258
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKN 295
P HR+ A + + ++ +G+ G
Sbjct: 259 PLGHRQGQPAWVIVDRTRLHRAVMGQSGSR 288
>gi|116331230|ref|YP_800948.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116124919|gb|ABJ76190.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 353
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 55/339 (16%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q SP+ +L+ L ++ FL + K DV+
Sbjct: 33 QKEVPGMSPVDRDILSDLLSSCFQVA--GNTLGAVLSRSSAFLNPNVETKSRKDVESELK 90
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S S + S + + S + + +++G
Sbjct: 91 SGSFLLCSTLSGSV--------------NGRIVLVMSAENAVKIANSMMGG-------FE 129
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182
+ L + + + ++ + L IST N + L + E +
Sbjct: 130 SGELDEAQIQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETMV 189
Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS-------------------QNKSEN 222
+ N+TIEN+ S ++ T + S S +
Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSVGGDMSNMGMGGMGMGASPGSMS 249
Query: 223 QSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ +++ + K +KD++ L G +I
Sbjct: 250 VKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLA 309
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L NGK I E+ + +N+ +R+TD ++ +
Sbjct: 310 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 348
>gi|116328500|ref|YP_798220.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116121244|gb|ABJ79287.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
Length = 353
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/339 (14%), Positives = 98/339 (28%), Gaps = 55/339 (16%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
Q SP+ +L+ L ++ FL + K DV+
Sbjct: 33 QKEVPGMSPVDRDILSDLLSSCFQVA--GNTLGAVLSRSSAFLNPNVETKSRKDVESELK 90
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
S S + S + + S + + +++G
Sbjct: 91 SGSFLLCSTLSGSV--------------NGRIVLAMSAENAVKIANSMMGG-------FE 129
Query: 124 NRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVT 182
+ L + + + ++ + L IST N + L + E +
Sbjct: 130 SGELDEAQIQTLRDSLTPVMGALISQISTKTGGGVNGSPSETRNVTSPAALVLPDGETMV 189
Query: 183 TINMNMTIENVAS-SFVLIIPQETLLKTTLISLSS-------------------QNKSEN 222
+ N+TIEN+ S ++ T + S S +
Sbjct: 190 RVFFNLTIENIPSFRVQFLLSLSTASDLLNLYRRSGSVGGDMSNMGMGGMGMGASPGSMS 249
Query: 223 QSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ +++ + K +KD++ L G +I
Sbjct: 250 VKSVAFPNLGTASGASNTPNLNLLMDVQMSVTVELGRTKMYIKDILGLGEGSIIELDKLA 309
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L NGK I E+ + +N+ +R+TD ++ +
Sbjct: 310 GEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIVSPIDRI 348
>gi|134300219|ref|YP_001113715.1| flagellar motor switch protein [Desulfotomaculum reducens MI-1]
gi|134052919|gb|ABO50890.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
Length = 411
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/340 (11%), Positives = 93/340 (27%), Gaps = 59/340 (17%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
+G + E + V+I+ + + SF ++ +
Sbjct: 65 EEMDALGEIGNISMGSASTTLSELLSQKVNITSPRVKIQTKQQLFDSFNIPYLVIKVDFN 124
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + N T+ ++G + + + + + I + L+Q
Sbjct: 125 EGLNGYNVLVIKLNDAATMASLMMGGDGTPMSEEISELEISAASEAMNMMIGTAATSLSQ 184
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRL-SNEFVTTINMNMTIENV--ASSFVLIIPQET 205
T SP + + + ++ +M I ++ ++ +
Sbjct: 185 MFQRTINISPPQTNLLRSKGDPLAQPPQDIEDVIVVVSFDMKIGDLVDTEIMQIMSVETA 244
Query: 206 LLKTTLISLSSQNKSENQ--------------------SEDLIDPFA------------- 232
+ L+ +E Q + D A
Sbjct: 245 KEEAHLLLKDIMGGTEEQVEAPMVPTEAATSATSIPGSDDRESDELAGIMMQETAPPPTP 304
Query: 233 ----------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + + K +KDV+ + G V+
Sbjct: 305 AMPPQAAPIKQTSLASLEQRNLDLILDIPLKVSVILGRTKRPIKDVLKIAPGSVVELDSL 364
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + + E+ V +N+ IRIT+ I+ ++
Sbjct: 365 ADEPVDILVNGTLVATGEVVVVNENFGIRITNIISPMERV 404
>gi|188589151|ref|YP_001920166.1| flagellar motor switch protein [Clostridium botulinum E3 str.
Alaska E43]
gi|251777746|ref|ZP_04820666.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188499432|gb|ACD52568.1| flagellar motor switch protein FliN [Clostridium botulinum E3 str.
Alaska E43]
gi|243082061|gb|EES47951.1| flagellar motor switch protein FliN [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 383
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/343 (11%), Positives = 104/343 (30%), Gaps = 60/343 (17%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + + ++ +V+I+ + SF+ V
Sbjct: 42 KDLLGEIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIVLDVEYTEG 101
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149
+ + + ++G + + + ++ + I + +
Sbjct: 102 IIGRNILVMKTDDAAVIANLMMGGDGQVSENPELSEIEVSAVQEAMNQMIGSAATSMATM 161
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL-- 206
S + SP + +E + ++ + I + V S+ + I+P T
Sbjct: 162 FSRRVDISPPTSKLWKEKSEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKK 221
Query: 207 -----------------------LKTTLISLSSQNKSENQSEDLIDPFARK--------- 234
K + + + + ++E + P
Sbjct: 222 IVSIMMGEEESSSVATDPKKVVEEKPVVKATTQKAEAEKRESIQAKPIVEAPRVQQPIEV 281
Query: 235 ----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ ++I + K ++KD++ L G +I +
Sbjct: 282 HEAAFETLVPGDTAQVPKNIDLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDKLAE 341
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ NGK+I E+ V +N+ +RIT ++ + + +K+
Sbjct: 342 EPVEILVNGKKIAYGEVVVVDENFGVRITSIVS-NAERIKSLR 383
>gi|56964022|ref|YP_175753.1| flagellar motor switch protein [Bacillus clausii KSM-K16]
gi|56910265|dbj|BAD64792.1| flagellar motor switch protein FliN/FliY [Bacillus clausii KSM-K16]
Length = 395
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 31/335 (9%), Positives = 97/335 (28%), Gaps = 57/335 (17%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSS 90
+ +G + ++ V+I+ + K + F V
Sbjct: 58 QDTIGEIGNISFGSSATALSALLNQKVEITTPVVSAVKSDMLRQLFPRPNVIVHVKYTEG 117
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + + + +LG + E + + ++ + + S ++
Sbjct: 118 FEGSNLFVITTDDAAIIADLMLGGNGENPDPELSEMHLSAVQEAMNQMMGSASTSMSTLF 177
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM---TIENVASSFVLIIPQE--- 204
+ + SP + + D + E + I+ ++ + + ++ +P
Sbjct: 178 NRRVDISPPKVEVIEFDEQSRTEYVSDGEDLIAISFSLRVGDLIDSKLMQLISVPFSKDY 237
Query: 205 -------------------------------------------------TLLKTTLISLS 215
+ ++
Sbjct: 238 ANALLGGGATAEPPVQEAEPLPEPAPAIGGLGDGTSAERVNQHIGQRVKDAEQVVEKAVF 297
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S ++ E + + + + + K T+++++++ G +I
Sbjct: 298 SNFETTKPDEAEMQNL-DMLLDIPLEVKVELGRTKKTIREILSIAQGSIIELDKLAGEPV 356
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K I E+ + +N+ +RITD ++ +
Sbjct: 357 DVLINDKLIAKGEVVVIDENFGVRITDIVSKKDRL 391
>gi|217077701|ref|YP_002335419.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
TCF52B]
gi|217037556|gb|ACJ76078.1| flagellar motor switch phosphatase FliY [Thermosipho africanus
TCF52B]
Length = 365
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/349 (13%), Positives = 105/349 (30%), Gaps = 53/349 (15%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
LL +L + + + +G + + VDI+ + K S I
Sbjct: 13 DSLLNQLNEDEDLTEIEKDMFGEIGNIIMGSGTTALSTLLGRKVDITVPTVDLKKISEIK 72
Query: 75 HSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
+ LV + ++G + E + + + +
Sbjct: 73 KEVTGKNAVVSIHFKGAIEGLNALIIPQMLVAQIANIMMGGTGEVENEEVDEISLSAVSE 132
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDF--YDIDYLKKNTNRLSNEFVTT-INMNMTI 190
+ + + L+ + + +P + +D D + S++ V +N + I
Sbjct: 133 AMNQMMGAAATSLSDMLKKPVDITPPTVELIDFDGDNVNFPPIATSDDAVVAKVNFKLVI 192
Query: 191 ENVA-SSFVLIIPQETLL------------------------------------------ 207
E + + F L +P E +
Sbjct: 193 EGLEPADFFLAMPPEFVKKLYSMIFESEKQEKVESSAAGTSSPVSTQNYAEHSATTTKNV 252
Query: 208 ---KTTLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKI 261
++ + Q+ + + + +N+ + K TLK V+ L +
Sbjct: 253 EKNPVSVSPVQFQSFESGGTVKSTGEIPDRIQALLDIPLNVVVELGKTKLTLKQVMELSV 312
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G +I + NGK I E+ + +N+ +RIT+ + ++
Sbjct: 313 GSLIELDKLTGEPVDIIVNGKLIARGEVVVIDENFGVRITEIVTPQERF 361
>gi|205373388|ref|ZP_03226192.1| flagellar motor switch protein [Bacillus coahuilensis m4-4]
Length = 388
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/372 (9%), Positives = 100/372 (26%), Gaps = 70/372 (18%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ ++ P ++L +G + ++ VDI+
Sbjct: 18 GTADSSSEPKQKVVLEDYLSPFEQDA-----LGEIGNISFGSSATALSTLLNQKVDITTP 72
Query: 64 SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + + F + + + + + + + +LG
Sbjct: 73 TVSIIEKDKLQDEFPQPYVAIQVSYTEGFLGTNLLVIKQDDASIIADLMLGGDGLNTGTD 132
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
+ ++ + + + ++ S + SP + D + + N + +
Sbjct: 133 LGEIQLSAVQEAMNQMMGSAATSMSTIFSKKVDISPPIIDLMYLPEGEGVENIPDIDLLV 192
Query: 183 TINMNMTIEN-VASSFVLIIPQE-----------------------TLLKTTLISL---- 214
I+ M I + S+ + ++P
Sbjct: 193 KISFKMKIGTLIDSNMMQLVPLSFAKSLVEDLTNNNNTNATKSDKIEEEPPKPSMATSTP 252
Query: 215 -----SSQNKSENQSEDLIDPFARKTYQLNVNI--------------------------- 242
S Q + Q F + VN+
Sbjct: 253 VQETQSQQPFTTYQQPQAPQHFGGQHLSQPVNVQPAEFASFGQPALQESEARNLNMLLDI 312
Query: 243 ----DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ K ++K+++ L G +I + N + I E+ + +N+ +
Sbjct: 313 PLSVTVELGRTKRSVKEILELSQGSIIELDKLAGEPVDILVNNRLIAKGEVVVIDENFGV 372
Query: 299 RITDRINFDQKS 310
R+TD ++ ++
Sbjct: 373 RLTDIVSQTERI 384
>gi|126736779|ref|ZP_01752517.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2]
gi|126713750|gb|EBA10623.1| possible flagellar switch protein FliM [Roseobacter sp. CCS2]
Length = 364
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 96/288 (33%), Gaps = 12/288 (4%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
LL R+T G + ++SS L K + + L + + + + ++ +
Sbjct: 9 LLRRMTRPQGQEVADNPLTSSRAVRLA--LTKAANDTVGLVLTVQSVAEEVTSLDDMLGT 66
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + I + +LE + P R+ + +K L
Sbjct: 67 LADELMLVALE-RDGGLAGLIALDMEMRAAVLEMETMGAVLAHP-AEARAPTLTDKTLCD 124
Query: 137 RTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
+ + + + + ++ + I+ + L++ + +++ +
Sbjct: 125 PLLQAFLSAFPLAVLDTPLEGWMDSVVLGHKIESTRAAGLVLADRDYRIVRLSVDLGVAE 184
Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
L+I +L + + + D F + +D ++ +L
Sbjct: 185 RQAELVI----VLPVVQHAPEPET-TPETFFDWDSDFQDRVSDAPARLDALLHRFPISLA 239
Query: 255 DVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301
L++G V+P L + +G E+ +LG++G +R+
Sbjct: 240 TAQGLQVGSVLPLPGCTVNSVRLLSPDGHEVAQAKLGQIGGYRAVRLE 287
>gi|220932511|ref|YP_002509419.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
gi|219993821|gb|ACL70424.1| CheC, inhibitor of MCP methylation [Halothermothrix orenii H 168]
Length = 375
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/339 (11%), Positives = 105/339 (30%), Gaps = 62/339 (18%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSW 91
+ +G + +D V+I+ + F + ++ V +S
Sbjct: 35 DVLGEIGNIAMGSAATALSTILDQKVEITTPKVEVVTFKELSQEYERPCVLVRVKYISGL 94
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ + + + ++G + +L LS + + + + + +++ + ++
Sbjct: 95 EGINLLIIKEEDAMVIADLMMGGDGTSDEKLDEIHLSAIGEAMNQMMGSSSTSM-SSILN 153
Query: 152 TTQESSPNLE---DFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
SP D +++ ++ +E V +I+ + + + + SSF I P
Sbjct: 154 EVVNISPPETKYLDIDELNGKREKYLGSDDEKVVSISFRLKVGDLIDSSFKQIAPMGFTK 213
Query: 208 KTTLISLSSQN-----KSENQSEDLIDPFA------------------------------ 232
+ + + +E + + A
Sbjct: 214 QLAVKLVEEMGGLTAKDAEEEKGEARKTVAATASTGSASTTGQPVSGSANRVSAGEENVD 273
Query: 233 ---------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + + R+ + T+K ++ L G ++
Sbjct: 274 VKRAQFPSFDNGNTAPLPQNMELIQDVPLEVTVRLGKTRMTIKQILDLGEGSIVELEKLA 333
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L NGK I E+ + +N+ R+ D I+ ++
Sbjct: 334 GEPVDLLVNGKLIAKGEVVVIDENFGFRVKDIISPMERL 372
>gi|89055183|ref|YP_510634.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1]
gi|88864732|gb|ABD55609.1| hypothetical protein Jann_2692 [Jannaschia sp. CCS1]
Length = 388
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 8/296 (2%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISS-SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ P +L+R+ T L + + + L + + SG
Sbjct: 2 SDPKQRSVLSRIVAAHLRGGTDVAALEPGLQTGLTRAIRRASLPYAVLAPQVEDAAVTSG 61
Query: 69 -KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + E + + + + + LV L+E E R +
Sbjct: 62 ASLQDALDTMPEQGLTAAVEDAEGR-RGLVALDHPLVDALIEVQATGEVEKTNHPA-RKV 119
Query: 128 STVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ +++ L + + + A ++ + I + + +
Sbjct: 120 TRIDEALCRDFLDLVLAAFAQETAGQAGRDWPDRMRYGSIITERAQLNLLMPERGYRVLR 179
Query: 186 MNMTIENV-ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
++T+ VL++P + + S+ + + D + +D
Sbjct: 180 TSVTMGGHKTGDLVLVLPSDPAIARRGGSVEQPSAPAEAPKGWGDRMLGAISTAPMALDA 239
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRVGKNYTIR 299
+ L V L G ++PF H + + L G LG+V +R
Sbjct: 240 VLMRTIMPLGKVEDLAQGDLVPFDHNDLSAISLEDEIGHVFARGALGQVSGRRAVR 295
>gi|168699681|ref|ZP_02731958.1| hypothetical protein GobsU_09169 [Gemmata obscuriglobus UQM 2246]
Length = 283
Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 82/266 (30%), Gaps = 11/266 (4%)
Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSN 101
+ + + + + ++ ++ + F E + + + N
Sbjct: 28 CRRTNEAAVQALRYPATLQIAKVETPSAAYCLAFFPEGAISVPLAPPDAPGGGALLVFPN 87
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
++I LL L+G + E + +R + +E L + + + + + P +
Sbjct: 88 PVLIALLSGLIGEAPEAL--PADREPTPMESALIPHLVREFF--VTPFLKSWPGVEPLVV 143
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
D NE + ++ L++ + L++ S
Sbjct: 144 DI-GAPAAPAAVWTGGNEHNIFVTFTLSAPYGEHPIYLLLTRSG----RWEQLAAIGLSP 198
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ ++V + + T++DV L G VI F + +G
Sbjct: 199 PVTPAPKSEIESVVRAMSVEMSVILGRADLTMRDVSDLTTGDVIVFDQKVTEPLDGLVSG 258
Query: 282 KEIYSCELGRVGKNYTIRITDRINFD 307
+ G VG + + D I D
Sbjct: 259 ARKFRVWPGVVGDRAAV-VVDTITGD 283
>gi|313681609|ref|YP_004059347.1| flagellar motor switch protein flin [Sulfuricurvum kujiense DSM
16994]
gi|313154469|gb|ADR33147.1| flagellar motor switch protein FliN [Sulfuricurvum kujiense DSM
16994]
Length = 288
Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/289 (12%), Positives = 86/289 (29%), Gaps = 26/289 (8%)
Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
+ + I+ + I + + + + +
Sbjct: 8 FATEAVATIEGLTGQTPTITLKEAEEISI--ISNVIPPIAQIHVSFSGAAAGRGIVMMPP 65
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
L L + +LG E + + + K ++ I ++ +++ +E
Sbjct: 66 QLATALGDMMLGGDGEAQDTMSDEDMDAA-----KEIVSNIVGAMSTTLASQKELPKFTI 120
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII----------------PQET 205
+++ ++ + + + ++ S +L I P
Sbjct: 121 KPERAEFIPESGEVNLDGYAKMFVFTFALGHINSLMMLAIDSTINEALTGEKAAPAPASN 180
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ SS + E + + + + RI KK LKDV+++ IG VI
Sbjct: 181 SSNIFD-APSSSVPAVKLDEGEMKNI-GLIMGVKLPVRVRIGKKKMLLKDVLSMDIGSVI 238
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ + I E+ V N+ ++IT I + L
Sbjct: 239 ELNQLANDPLDILVDDHVIAQGEVVIVDGNFGVQITS-IGTKRDRLNKL 286
>gi|121533749|ref|ZP_01665576.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
Nor1]
gi|121307740|gb|EAX48655.1| CheC, inhibitor of MCP methylation [Thermosinus carboxydivorans
Nor1]
Length = 376
Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats.
Identities = 33/338 (9%), Positives = 90/338 (26%), Gaps = 60/338 (17%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + V I+ + I + V
Sbjct: 34 KDALGEIGNICMGSAATTLSILLGRRVSITTPQVSVTTLNEIKRQYPLPYLVIEVYYSHG 93
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + ++G P N + + + + + ++
Sbjct: 94 ILGTNLLAIRQQDALIIADLMMGGDGSNPPTELNDLYMSAVSEAMNQMMGSTATSMSTVF 153
Query: 151 STTQESSPNLEDF----------------YDIDYLKKNTNR---LSNEFVTTINMNMTIE 191
+ SP + I + + +E + I +N+ E
Sbjct: 154 KKKVDISPPQVNVFDFGVDGNISAMAAGDEPIVSVSFRMEVEDLIDSEIMQIIPINVAKE 213
Query: 192 NVASSFVLI-----------------IPQETLLKTTLISLSSQNKS-------------- 220
V S I PQ + + + ++
Sbjct: 214 MVESLMAAIQPTPKTTTSAAPNAATSTPQPVMAPARETNFAQAQQAAALPKTHQPLTNVT 273
Query: 221 ---------ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + D + + + + + +++++ L G V+
Sbjct: 274 VQPVQFAPLKPTTPTTSDTNINLIMDVPLQVTVELGRTRKLIREILELGPGSVVELDKLA 333
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ NGK I E+ + +N+ +RIT+ ++ ++
Sbjct: 334 GEPVDILVNGKLIAKGEVVVIDENFGVRITEIVSPLER 371
>gi|78043679|ref|YP_359867.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995794|gb|ABB14693.1| flagellar motor switch protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 347
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/313 (12%), Positives = 95/313 (30%), Gaps = 32/313 (10%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
+ G + + + V I+ + K SF+E ++ +
Sbjct: 36 AEKDALGEAGNISMGSAATSLSQLVGRKVIITSPRVEVQKEKEFFASFREPYMVIEVEFT 95
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
S + N V + ++G ++ S ++ + + + L++
Sbjct: 96 EGLSGKNVLIIKENEVGVIASLMMGGDGTHSGEITELEQSAAQEAMNQMIASSA-TALSE 154
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
SP + +E V I NM IE+ V + + ++ T
Sbjct: 155 IFKRKINISPPRSKMINSRENDTYEPFGGHE-VVVIYFNMQIEDLVDTDIMQVMEPATAK 213
Query: 208 KTTLISLSSQNKSENQSEDLIDPFA----------------------------RKTYQLN 239
+ + L+ S ++ +
Sbjct: 214 EVAQMLLAKVYGSPETEPAVMAHEMLEGAKATNIEKKVEKAEEQFVLPTDEKLELILDIP 273
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ ++ + + +K++++ G +I + NG + E+ VG+N+ I+
Sbjct: 274 LKVEVVLGRTRRPIKEILSFGPGAIIDLDQLVDEDVEVLVNGTLVAKGEIVVVGENFGIK 333
Query: 300 ITDRINFDQKSLK 312
I ++ ++ K
Sbjct: 334 INQILSPKERLSK 346
>gi|289523559|ref|ZP_06440413.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503251|gb|EFD24415.1| putative flagellar motor switch phosphatase FliY [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 366
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/352 (11%), Positives = 102/352 (28%), Gaps = 59/352 (16%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
LL + G + E + LY + + + +V I + + +
Sbjct: 13 ALLKGIGGASKQDEDEE--LKEIASLYAQAFTNVLQLLSGGEVKIDVGESRVCGQAAFVE 70
Query: 76 SFKENF-VFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
+++ + ++ S + L + ++G +P N + ++
Sbjct: 71 ELEKSSYLLYVVDYDAFEGWYHAFVMSERTALLLADIMMGGDGVELPDSMNDLYLSAAQE 130
Query: 134 LAKRTIAQISAVLNQCIST------------------TQESSPNLEDFYDIDYLKKNTNR 175
+ + + +S E P+ E+ + + +
Sbjct: 131 GLSQITGAAISEMVNLLSGRRIGIKNTSCSLKVEGWLPFELLPSSENVWVFSLNAEIKDV 190
Query: 176 --------LSNEFVTTINMNMT--IENVASSFVLII--PQETLLKTTLISLSSQNKSENQ 223
+ + V ++ + + + P+ET + ++ +
Sbjct: 191 GNLKLWSLMPQKIVQVLSDEIKKRVGSREQPQKRSEQGPKETGSPVSAKVSQVAREASGR 250
Query: 224 -------------------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+D+ + V I R+ T+ +++
Sbjct: 251 VVGEEVSGAVEVRPAEFVPLDKQIADQDMDGHNFDLIVDVPVRITVRLGQAAKTIGEILN 310
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L G VI + NGK I E+ + +N+ +RIT+ +N +
Sbjct: 311 LTPGSVIELDKMAGDPVDILVNGKLIARGEVVVIDENFGVRITEIVNRSDRI 362
>gi|300854134|ref|YP_003779118.1| putative flagellar motor switch protein [Clostridium ljungdahlii
DSM 13528]
gi|300434249|gb|ADK14016.1| predicted flagellar motor switch protein [Clostridium ljungdahlii
DSM 13528]
Length = 401
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/376 (10%), Positives = 100/376 (26%), Gaps = 81/376 (21%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
P + + +G + ++ V+I+ +
Sbjct: 23 DPPSETNSQDDPQLPDIEKDLLGEIGNISMGSASTALSTIINQQVNITTPVVVVTTLKEL 82
Query: 74 IHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ F+ + + ++G + P + + L +E
Sbjct: 83 KNEFEVPNVALEVKYTEGIIGENLLVMKITDAAVIASLMMGGDGKIDPDI--KELGEIEI 140
Query: 133 KL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+ I + + + SP + ++ +E V ++ ++
Sbjct: 141 SAVSEAMNQMIGSAATSMATMLMREVNISPPVSKVWNDITKPLTEGISEDEAVVKVSFSL 200
Query: 189 TIEN-VASSFVLIIPQETLLKTTLISLSS------------------------------- 216
I V SS + ++P T K I +
Sbjct: 201 KIGELVDSSIMQVLPIATAKKVVSIMMGQEETAPAESAPSAPENDSTSTEPELEPQPESQ 260
Query: 217 -----------QNKSENQSEDLIDPFARKTYQLNVNI----------------------- 242
Q++ E ++ P + V +
Sbjct: 261 PPIQQSQPAPAQSQMEQRTPVYEKPIETNVNKQPVEVSRASFQPLSGSQDTEVVPKNIDL 320
Query: 243 --------DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ K +KD++ L G +I + + NGK++ E+ + +
Sbjct: 321 ILDVPLEISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVIDE 380
Query: 295 NYTIRITDRINFDQKS 310
N+ +RIT ++ ++K
Sbjct: 381 NFGVRITGIVSNEEKI 396
>gi|323703197|ref|ZP_08114850.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum nigrificans DSM 574]
gi|323531856|gb|EGB21742.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum nigrificans DSM 574]
Length = 390
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/372 (10%), Positives = 107/372 (28%), Gaps = 62/372 (16%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI-----EKISSSLGYLYKKFLPKIFKEKMD 55
MRGQ ++ P A L G+ T+ + +G + E ++
Sbjct: 14 MRGQLLNNANQPEQGSNQATLPPDSGEMSTLLTDEEKDALGEIGNISMGSASTTLSELLN 73
Query: 56 LDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGA 114
V I+ + + + SF+ ++ + + + + + ++G
Sbjct: 74 QKVSITSPRVRVMTKTELFDSFEVPYLVIKVDFSEGLNGYNLLIIRLSDAAVMASLMMGG 133
Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN-- 172
T+ + + + + I + L+Q SP +
Sbjct: 134 DGTTMSEEISELEISAAAEAMNMMIGTAATSLSQMFHRPINISPPQTNLLKTKSDPLVHP 193
Query: 173 -TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS------- 224
V + ++ + ++ + + L+ + +++++
Sbjct: 194 PEQIEETIVVVSFSLKIGDLVDTDIMQIMGVETAKEEANLLLMDIMGLAQDETPAPETAP 253
Query: 225 ------------------------------------------EDLIDPFARK----TYQL 238
+ ++ +
Sbjct: 254 AGAANANPVSPPVGNMAETPAPTAPMPTSPGIAGFSGEETFRPQNLGSLEQRNLELILDI 313
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + + K +KDV+ + G V+ + NG + + E+ V +N+ +
Sbjct: 314 PLKVSVVLGRTKRPIKDVLRIAPGSVVELDSLADEPVEILVNGTLVATGEVVVVNENFGV 373
Query: 299 RITDRINFDQKS 310
RIT+ I+ ++
Sbjct: 374 RITNIISPMERI 385
>gi|229918639|ref|YP_002887285.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sp. AT1b]
gi|229470068|gb|ACQ71840.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Exiguobacterium sp. AT1b]
Length = 376
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/337 (12%), Positives = 96/337 (28%), Gaps = 59/337 (17%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+G + + V+I+ + + +
Sbjct: 38 SDALGEIGNISFGNSATALSTLLQQKVEITTPVVSEVRIEALRERYPTPHVALRVGYTEG 97
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + + +LG S E L LS V++ + + + L+
Sbjct: 98 IQGENVLVLTREDAAIISDLMLGGSGENVDPESLDEIRLSAVQEA-MNQMMGAAATSLST 156
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN-EFVTTINMNMTIEN-VASSFVLIIP---- 202
S + SP L + +D + +RL E + I N+ + + S+ V I P
Sbjct: 157 VFSKKIDISPPLVEVFDATKNQTIIDRLELWETMVLIEFNLKVGTLIDSTIVQIAPIQFG 216
Query: 203 --------------QETLLKTTLISLS--------------------------------- 215
Q T +
Sbjct: 217 KQLVDELMKATGEAQATPEPVKAQPQAEAPKPQPQAQQQAQPVAPQPSKQKSMPEVAVSQ 276
Query: 216 --SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
S++ Y + +N+ + K ++++V+ L G +I
Sbjct: 277 AEFMPLQSPASQEAAPANLGLLYDVPLNVTVELGRTKKSVREVLELSQGSIIELDKLAGE 336
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + I E+ + +N+ +R+T+ I ++
Sbjct: 337 PVDIYVNQQRIARGEVVVIEENFGVRVTEIIQPHERI 373
>gi|229160695|ref|ZP_04288687.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
gi|228622710|gb|EEK79544.1| CheC, inhibitor of MCP methylation [Bacillus cereus R309803]
Length = 547
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 26/304 (8%), Positives = 93/304 (30%), Gaps = 28/304 (9%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPHVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPEVKFVTLREEMEYLGEAMEGDELVQITFNIEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNV 240
+ + + + + +
Sbjct: 424 AKEMVRRLLYPMVEGQEEQIEEEIEEEDIVAPVVQPIEFKEVKQIEPVYMDTSILQNVEM 483
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
N+ T++D+++L+ + + + N + EL V + +++
Sbjct: 484 NVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIQIYVNDVLVAYGELVNVDGFFGVKV 543
Query: 301 TDRI 304
T +
Sbjct: 544 TKTL 547
>gi|258514032|ref|YP_003190254.1| flagellar motor switch protein [Desulfotomaculum acetoxidans DSM
771]
gi|257777737|gb|ACV61631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfotomaculum acetoxidans DSM 771]
Length = 572
Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/334 (9%), Positives = 84/334 (25%), Gaps = 55/334 (16%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-FSQA 86
+ + +G + ++ V I+ + ++ SF+ F+
Sbjct: 237 ESQEKDALGEVGNISTGSASTTLSALLNQRVQITSPRISILTETELLSSFELPFMTVKVQ 296
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + + ++G + + + I + L
Sbjct: 297 YTEGIIGFNLWVVTLRDALIIADLMMGGEGIPASNEITELEISAASEAMNQMIGTAATSL 356
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV------------- 193
+ SP + + I+ M + +V
Sbjct: 357 AAIFNRIINISPPETHIIRAREN--LGEIIDTHPLVVISFRMIVGDVMDTEIMQIMSVET 414
Query: 194 -----------------ASSFVLIIPQETLLKTTLISLSSQNK----------------- 219
+ + P + T + +
Sbjct: 415 AKYEVGLLLSGLEPAAPEMAVRVEEPVPSTEPVTNKPPENLSPMAAGGQNQTGYQSVPEE 474
Query: 220 ---SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + +N+ + K +KDV+ L G V+ +
Sbjct: 475 RVSQTPADVNWDK--INLILDVPLNVTVVLGKTKKPIKDVLGLTPGSVVELGALVEEPVE 532
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + E+ V +N+ +RIT+ I ++
Sbjct: 533 VLVNGTLVARGEVVVVNENFGVRITNVITPQERI 566
Score = 36.2 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 3/231 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SS 90
+ + ++ V IS S + S++ +++ +
Sbjct: 39 IDALGEVSNISMGTSSTTLSSLLNQQVQISGASISIMSEEEFMSSYRASYMAVRVQFVKG 98
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S + + + ++G + N + + + I+ L
Sbjct: 99 LSGFNLWLVKLHDALVMANLMMGVEGTPVTGEINELEISAASEAMNQMISTSVTGLAGMF 158
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ T + SP + + V M + + + + II ET +
Sbjct: 159 NRTIDISPPQTRIINEGDTLEELVVEGPFVVLFFKMTVGDM-LDTEIIQIISVETAKEAV 217
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
+++ + S S + I K V + TTL ++ ++
Sbjct: 218 SSLMNAMDVSAGVSLENILESQEKDALGEVGNIST-GSASTTLSALLNQRV 267
>gi|229029411|ref|ZP_04185494.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
gi|228731870|gb|EEL82769.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1271]
Length = 548
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 246 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 305
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 306 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 365
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 366 EMFKEKMDMTPPDVKFVTLKEEMEYLGEAMEVDELVQITFNLEIGDLLQSKMYQILPISE 425
Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ L + + + + +N
Sbjct: 426 AKEMVRRLLYPMVEAEEEIAEEEIEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 485
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 486 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 545
Query: 302 DRI 304
+
Sbjct: 546 KSL 548
>gi|260575623|ref|ZP_05843621.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
gi|259022266|gb|EEW25564.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
Length = 325
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 24/249 (9%), Positives = 73/249 (29%), Gaps = 8/249 (3%)
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
+++ Q + ++ E + + + S +++ L+E
Sbjct: 41 LEVEKLDIQRRSLTELLDMPPERALIAVLE-GPAEGLGVLVISPSILAGLIEAQTVGQVS 99
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNR 175
P+ R + + + + + + + + +D +
Sbjct: 100 PRPEFA-RKPTRTDAAMVAGMLDLALEGMESLLVAEDDLVWAGGFRYASFLDDPRPLGLL 158
Query: 176 LSN--EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR 233
L + + +++ S +L +P + + + +
Sbjct: 159 LEDVPYRLVQAQISLAGGMKTGSLMLALPADGRGR-KPRRPDAVAPQAGAALMFAAAMNE 217
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRV 292
+ + ++ + L V+ LK+G V+P L+ G+ + LG+
Sbjct: 218 QVMAADCTLEAVLAKVTLPLAAVMKLKVGDVLPLGTAALDRIALTGITGQPVAVGRLGQN 277
Query: 293 GKNYTIRIT 301
+R+
Sbjct: 278 RGMRAVRVD 286
>gi|225181579|ref|ZP_03735020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Dethiobacter alkaliphilus AHT 1]
gi|225167687|gb|EEG76497.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Dethiobacter alkaliphilus AHT 1]
Length = 541
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/322 (10%), Positives = 92/322 (28%), Gaps = 44/322 (13%)
Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
+ +G + +D V+I+ + + + V
Sbjct: 215 AISADEGDTIAEIGNISMGAAATALSTLLDNRVNITTPRISITTLRQVREQYPQPCVVVN 274
Query: 86 ASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
S + + ++G + + + + + + S
Sbjct: 275 VRYRTGLSGENVLIMGEQDAALIAAVMMGEPTDGPLGELDEIRLSAVSEAMNQMMGSSST 334
Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQ 203
L + S + +P + ++ + + + ++ + ++ M + ++ S + +IP
Sbjct: 335 ALAEMFSREVDITPPVTEYGNPAE-EADLTVNIDDPMVQVSFRMEVADILDSDLIQLIPL 393
Query: 204 ETL-LKTTLISLSSQNKSENQS-------------------------------------- 224
+ ++ + + EN
Sbjct: 394 KFAREMAGVLLGAFAGEEENHDFAQETEPVVEPLLPNVEDVEPVMSTEPQDWLQESSPES 453
Query: 225 --EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
+ + V I + +K LK+++ K G V+ + ANGK
Sbjct: 454 TLPEERGLQLDLIRDIPVEITGLLGRRKLPLKELMAAKAGSVVELSCPADAPVDILANGK 513
Query: 283 EIYSCELGRVGKNYTIRITDRI 304
+ E+ + + I+IT+ +
Sbjct: 514 LVARGEVVHYNERFGIKITEIM 535
>gi|228900312|ref|ZP_04064542.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
4222]
gi|228859347|gb|EEN03777.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL
4222]
Length = 544
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 -QETLLKTTLISLSSQN---------------------KSENQSEDLIDPFARKT-YQLN 239
E + + + + +
Sbjct: 420 IYEAKEMVRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 479
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+N+ T++D+++L+ + + + N + EL V + ++
Sbjct: 480 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 539
Query: 300 ITDRI 304
+T +
Sbjct: 540 VTKSL 544
>gi|206970642|ref|ZP_03231594.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
gi|206734278|gb|EDZ51448.1| putative flagellar motor switch protein [Bacillus cereus AH1134]
Length = 545
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGV 539
Query: 299 RITDRI 304
++T +
Sbjct: 540 KVTKSL 545
>gi|157364677|ref|YP_001471444.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
gi|157315281|gb|ABV34380.1| flagellar motor switch protein FliN [Thermotoga lettingae TMO]
Length = 343
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 37/297 (12%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ +V ++ ++ SF E V Q F I +L
Sbjct: 42 TAALGIVIGREVKVTLVEISQKTLKDLLSSFDETIVAVQIEFSDGLKGEFLILFPQSLGA 101
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS---TTQESSPNLED 162
+ + ++G S E + + + + + + L++ + + +L
Sbjct: 102 RIADMMMGGSGEPESFELDEVRLSAITETMNQMMGSSTTSLSEQTKKKVSISKLKVDLVK 161
Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS--------- 213
+ L N ++ I++ + S +LI P I
Sbjct: 162 KDEEPVLNFNLAQVLAYVAYEIDLE---NSHKSKILLIAPALFFKDIYKIIHPAQEPEKE 218
Query: 214 --------------------LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
SQ + + + D + + + + K TL
Sbjct: 219 KEQKREEEKVKVQPVQFQEFDQSQRAAVSTPSEFSDKL-ELLLDVPLKVVVELGRAKMTL 277
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
K V+ + IG +I + NG+ I E+ V +N+ +RIT+ + Q+
Sbjct: 278 KQVLEMNIGSLIELDKLTGEPVDILVNGRLIAKGEVVVVDENFGVRITEIVTPKQRI 334
>gi|228958010|ref|ZP_04119747.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228801717|gb|EEM48597.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 546
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVNGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|75760649|ref|ZP_00740677.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74491863|gb|EAO55051.1| Chemotaxis protein cheC [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 544
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 -QETLLKTTLISLSSQN---------------------KSENQSEDLIDPFARKT-YQLN 239
E + + + + +
Sbjct: 420 IYEAKEMVRRLLYPMVEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 479
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+N+ T++D+++L+ + + + N + EL V + ++
Sbjct: 480 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 539
Query: 300 ITDRI 304
+T +
Sbjct: 540 VTKSL 544
>gi|229172378|ref|ZP_04299937.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
gi|228610849|gb|EEK68112.1| CheC, inhibitor of MCP methylation [Bacillus cereus MM3]
Length = 547
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/305 (9%), Positives = 92/305 (30%), Gaps = 30/305 (9%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + +S H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVESINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQE 204
+ + +P F + + +E V I N+ I ++ S I+P
Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQILPIS 422
Query: 205 TL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLN 239
+ + + + +
Sbjct: 423 EAKEMVRRLLYPMMEEEEEIVTEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNVE 482
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+N+ T++D+++L+ + + + N + EL V + ++
Sbjct: 483 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 542
Query: 300 ITDRI 304
+T +
Sbjct: 543 VTKSL 547
>gi|218896663|ref|YP_002445074.1| putative flagellar motor switch protein [Bacillus cereus G9842]
gi|218542881|gb|ACK95275.1| putative flagellar motor switch protein [Bacillus cereus G9842]
Length = 545
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 26/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
+ L + + + +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEETATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539
Query: 299 RITDRI 304
++T +
Sbjct: 540 KVTKSL 545
>gi|218662604|ref|ZP_03518534.1| flagellar C-ring motor switch protein [Rhizobium etli IE4771]
Length = 169
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 68/133 (51%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKGETGLDVTVNYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
H+I N A+L +WS N + C N VITL+ + +R LS +E
Sbjct: 72 HLIDDLSANVTLVDATLRNWSQNVTLACGNGFVITLMGAPARRHRRYDREPADRLLSIIE 131
Query: 132 KKLAKRTIAQISA 144
LA +I+
Sbjct: 132 LDLAVMVFDKIAK 144
>gi|47566114|ref|ZP_00237152.1| chemotaxis protein cheC [Bacillus cereus G9241]
gi|47557031|gb|EAL15361.1| chemotaxis protein cheC [Bacillus cereus G9241]
Length = 546
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ L + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEITEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|228964713|ref|ZP_04125820.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228794963|gb|EEM42462.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 545
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539
Query: 299 RITDRI 304
++T +
Sbjct: 540 KVTKSL 545
>gi|228938845|ref|ZP_04101445.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971726|ref|ZP_04132347.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978335|ref|ZP_04138712.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
gi|228781352|gb|EEM29553.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis Bt407]
gi|228787816|gb|EEM35774.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820694|gb|EEM66719.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 545
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539
Query: 299 RITDRI 304
++T +
Sbjct: 540 KVTKSL 545
>gi|228920442|ref|ZP_04083787.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229078913|ref|ZP_04211465.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
gi|228704327|gb|EEL56761.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock4-2]
gi|228839072|gb|EEM84368.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|229043485|ref|ZP_04191195.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
gi|229069283|ref|ZP_04202573.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
gi|229178140|ref|ZP_04305511.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
gi|229189828|ref|ZP_04316839.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
gi|228593636|gb|EEK51444.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 10876]
gi|228605270|gb|EEK62720.1| CheC, inhibitor of MCP methylation [Bacillus cereus 172560W]
gi|228713770|gb|EEL65655.1| CheC, inhibitor of MCP methylation [Bacillus cereus F65185]
gi|228725863|gb|EEL77110.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH676]
Length = 545
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 420 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539
Query: 299 RITDRI 304
++T +
Sbjct: 540 KVTKSL 545
>gi|228952111|ref|ZP_04114206.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228807643|gb|EEM54167.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|42780823|ref|NP_978070.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|42736743|gb|AAS40678.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|229149932|ref|ZP_04278160.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
gi|228633613|gb|EEK90214.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1550]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQ-----------------------NKSENQSEDLIDPFARKT-YQL 238
+ L + + + +
Sbjct: 421 ISEAKEMVKRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|229144343|ref|ZP_04272749.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
gi|228639130|gb|EEK95554.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST24]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|324325750|gb|ADY21010.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|222095355|ref|YP_002529415.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|221239413|gb|ACM12123.1| chemotaxis protein [Bacillus cereus Q1]
Length = 546
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|228907364|ref|ZP_04071222.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
gi|228852225|gb|EEM97021.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis IBL 200]
Length = 545
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 243 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 302
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 303 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 359
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 360 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 419
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 420 IAEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 479
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 480 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 539
Query: 299 RITDRI 304
++T +
Sbjct: 540 KVTKSL 545
>gi|229109188|ref|ZP_04238787.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
gi|228674198|gb|EEL29443.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-15]
Length = 546
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|218235145|ref|YP_002366416.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|296502313|ref|YP_003664013.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|218163102|gb|ACK63094.1| putative flagellar motor switch protein [Bacillus cereus B4264]
gi|296323365|gb|ADH06293.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
Length = 546
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|126741268|ref|ZP_01756947.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
gi|126717673|gb|EBA14396.1| hypothetical protein RSK20926_17557 [Roseobacter sp. SK209-2-6]
Length = 458
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/290 (10%), Positives = 83/290 (28%), Gaps = 19/290 (6%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
LAR + K S + ++ + E DL + + + +
Sbjct: 17 LARKLAVSKEGKGASN-GSFTLKVLRRSFARAASELCDLPLAVLAGRQSNRAPEELSDLL 75
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ + LV L++ R+ + + +
Sbjct: 76 SDQHLLIVLDGPDGR-VGAATMDAALVTALIQKQTIGQIMGKA-PSERNYTPTDAAMTAG 133
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193
+ + + + + + + + ++ +++ + +
Sbjct: 134 FLELSFEKVLGLLDGQADQTLFKGYRFGAQIDSVRNLVLGLEAEDYRLISMTVDIALGTM 193
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
S L++P+ T + L ++ L + + + L
Sbjct: 194 QGSINLLLPEPTPEELGLAGAAA-----------GPSLGSSMGNLRAELSAVLCKMRLPL 242
Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
++ LK G VIP +S G+ I +LG++ + +R+ +
Sbjct: 243 NELSNLKPGDVIPLEQAFLYETDLISIGGQSIAQGKLGQMNGSRAVRLNE 292
>gi|206975028|ref|ZP_03235943.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
gi|206747047|gb|EDZ58439.1| putative flagellar motor switch protein [Bacillus cereus H3081.97]
Length = 546
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEVAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|30019776|ref|NP_831407.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|229127057|ref|ZP_04256056.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
gi|29895321|gb|AAP08608.1| Chemotaxis protein cheC [Bacillus cereus ATCC 14579]
gi|228656410|gb|EEL12249.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-Cer4]
Length = 546
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|217959215|ref|YP_002337763.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|229138431|ref|ZP_04267020.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
gi|217066511|gb|ACJ80761.1| putative flagellar motor switch protein [Bacillus cereus AH187]
gi|228644968|gb|EEL01211.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST26]
Length = 546
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|229195944|ref|ZP_04322697.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
gi|228587503|gb|EEK45568.1| CheC, inhibitor of MCP methylation [Bacillus cereus m1293]
Length = 546
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 94/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFKEKMDMTPPDVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 L-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEAEEEIAEEEMEEEVVEPVVQPIEFKEVKQIEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|229090691|ref|ZP_04221924.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
gi|228692633|gb|EEL46359.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-42]
Length = 546
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ L + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|163939537|ref|YP_001644421.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|229166572|ref|ZP_04294324.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
gi|163861734|gb|ABY42793.1| CheC, inhibitor of MCP methylation [Bacillus weihenstephanensis
KBAB4]
gi|228616826|gb|EEK73899.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH621]
Length = 548
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/329 (9%), Positives = 103/329 (31%), Gaps = 28/329 (8%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ I + T ++ K + + + + + + ++ V IS
Sbjct: 220 EEIDEPTEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTP 279
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ ++ H + + + + + ++ +T+++ ++ + E P+
Sbjct: 280 NVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339
Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181
L K + + + + +++ + +P F + + ++ ++ + +
Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGESMAVDEL 399
Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218
I N+ I ++ S I+P + L
Sbjct: 400 VQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQ 459
Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + + + +N+ T++D+++L+ + +
Sbjct: 460 PIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ N + EL V + +++T +
Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKVTKSL 548
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 3/234 (1%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
I + + + ++ V I+ + + V +
Sbjct: 28 DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87
Query: 93 SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ ++ +++ + ++ + E + + ++ + + + +++
Sbjct: 88 MENLLVLQQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147
Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
T + SP ++ + ++K + N V ++ + I+N V S V ++ E +
Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
L E + ++ + + + +V + +K L ++ + IG
Sbjct: 208 INKLLQLSGGVEEEIDEPTEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261
>gi|254465099|ref|ZP_05078510.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
gi|206686007|gb|EDZ46489.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
Length = 430
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/292 (10%), Positives = 84/292 (28%), Gaps = 17/292 (5%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
+LAR + SS ++ L + + +L + + + +
Sbjct: 22 SVLARKLAATKEGSGAIS-SSLTLKALRRSLARAAADLCELPLAVLAARQCNRVSEDLAR 80
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ + + + V L++ + R + + +
Sbjct: 81 NLSDKDLLVVLDCPNGR-VGAASMDAATVTALIQQQTIGAVIGKA-PNERLYTPTDAAMT 138
Query: 136 KRTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNE--FVTTINMNMTIE 191
+ + A + + + ++ ++ + + V +N+++
Sbjct: 139 AEFLERSFAKVVSMLEGQADQAIFAGYRFGAQVENVRSLVLGMEADDYRVIELNLDLACG 198
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ LI+P+ T + R + + + +
Sbjct: 199 AMQGVMKLILPEPTAEELQESQGGGAQGPS---------LGRNLDSIRAELTAVLCKMRV 249
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD 302
L+D +LKIG +P L GK + LG++ + +R+
Sbjct: 250 PLRDFTSLKIGDTLPLDQAFLYETDLLTIGGKPVAQGRLGQMNGSRAVRLNR 301
>gi|108763286|ref|YP_630665.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
gi|108467166|gb|ABF92351.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
Length = 467
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 28/318 (8%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S + P L +++ G + + + E D +V ++ S
Sbjct: 44 SQEQRWRPFAFRNLEKVSRAQGLLAERLRWLTP-ADGTAVAVAARLTELFDAEVRLTVES 102
Query: 65 CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
Q + + + + + + + L ++ LLG + ET +
Sbjct: 103 VQVRPMAELRRFLGDPTFLAVLAPGALQGRAVLEVELALAHVAVDLLLGGAGET---VGL 159
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS----NEF 180
R L+ +E+ + + + +L + + + +
Sbjct: 160 RPLTDIEEGVMAYVVLEGLKLL------VPGLQAAVPRPRLDGVARGVDEVSARLGDDGP 213
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
+ +++ T+ + L++P L S+Q ++ + ++ FA + +
Sbjct: 214 MLAVHLQATLGPHSGMVRLVVPAAVLDAAEPAVESTQRRARG--KADLEAFASRLSAVRS 271
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVI-------PFLHREKTCAILSANGKEIYSCE----L 289
+ I + + +D+ +L++ V+ E A L E +
Sbjct: 272 WLRAEIGSAEISGQDLASLRVKDVLLVDALSARTDKGEAGTARLRVGKGTAGWAEAEVFV 331
Query: 290 GRVGKNYTIRITDRINFD 307
G Y RITD + +
Sbjct: 332 GE-DGRYQARITDFVQGE 348
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + T + VV L+ GQV+ LS NGK + EL +
Sbjct: 395 DLLGDVPLQIAVELARVPVTAQQVVGLRTGQVLELNRGPGEPVELSVNGKVVARGELVEL 454
Query: 293 GKNYTIRI 300
+RI
Sbjct: 455 EGQLGVRI 462
>gi|218902846|ref|YP_002450680.1| putative flagellar motor switch protein [Bacillus cereus AH820]
gi|228914310|ref|ZP_04077925.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926767|ref|ZP_04089835.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933015|ref|ZP_04095878.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229121283|ref|ZP_04250514.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
gi|218536301|gb|ACK88699.1| putative flagellar motor switch protein [Bacillus cereus AH820]
gi|228662128|gb|EEL17737.1| CheC, inhibitor of MCP methylation [Bacillus cereus 95/8201]
gi|228826616|gb|EEM72387.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832880|gb|EEM78449.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845304|gb|EEM90340.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 546
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 27/303 (8%), Positives = 95/303 (31%), Gaps = 27/303 (8%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVLN 147
+ + ++ +T+++ ++ + E P+ L K + + + + ++
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGIKEIMNQMMGHAATAMS 363
Query: 148 QCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIPQET 205
+ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 364 EMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILPISE 423
Query: 206 LLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQLNVN 241
+ L + + + + +N
Sbjct: 424 AKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNVEMN 483
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ T++D+++L+ + + + N + EL V + +++T
Sbjct: 484 VKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVKVT 543
Query: 302 DRI 304
+
Sbjct: 544 KSL 546
>gi|229096217|ref|ZP_04227190.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
gi|229115172|ref|ZP_04244582.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
gi|228668312|gb|EEL23744.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock1-3]
gi|228687177|gb|EEL41082.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-29]
Length = 547
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/320 (8%), Positives = 98/320 (30%), Gaps = 28/320 (8%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ ++ K + + + + + + ++ V IS + ++ H
Sbjct: 228 VETEIVEEHVEKEHLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRH 287
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ + + + + ++ +T+++ ++ + E P+ L
Sbjct: 288 YDGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGI 347
Query: 133 K-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTI 190
K + + + + +++ + +P F + + ++ + + + I N+ I
Sbjct: 348 KEIMNQMMGHAATAMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEI 407
Query: 191 ENV-ASSFVLIIPQETL-LKTTLISLSSQN-----------------------KSENQSE 225
++ S I+P + + + +
Sbjct: 408 GDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQ 467
Query: 226 DLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
+ +N+ T++D+++L+ + + + N +
Sbjct: 468 IEPVYMDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLV 527
Query: 285 YSCELGRVGKNYTIRITDRI 304
EL V + +++T +
Sbjct: 528 AYGELVNVDGFFGVKVTKSL 547
>gi|84515428|ref|ZP_01002790.1| possible flagellar switch protein FliM [Loktanella vestfoldensis
SKA53]
gi|84510711|gb|EAQ07166.1| possible flagellar switch protein FliM [Loktanella vestfoldensis
SKA53]
Length = 310
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 17/286 (5%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
+ G+ D + +++S L K + L + ++ T+ G+ ++ +
Sbjct: 1 MAGQAVDTPPVSPLTTSRAVRLA--LVKAASDAGGLVLRVASTADDVGQLDDLLGGLETG 58
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ + F+ L ++E P +R + +K L +
Sbjct: 59 LMLVGLDRRG-ALAGFVAVDMQLRAAMVEVQTTGRLLDQP-ADDRPATGADKALCDPLLV 116
Query: 141 QISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSN--EFVTTINMNMTIENVASS 196
+ L + + + ++ + + L + V +N+ + +
Sbjct: 117 AFLSALPPAVMGTAYEGWVDDVTVGGRLADSRLAGLLLEDGDYRVLRMNVELGTGDRQGE 176
Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+L++P + + + + D F+ + R++ K L
Sbjct: 177 VMLVLP--------VQAAPMVPEEQAPVMDWETAFSAAVQDAPAMLTARLHQFKMPLGRA 228
Query: 257 VTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRIT 301
L++GQV+P L A +G+ + +LG+ + +RI
Sbjct: 229 QALQVGQVVPLPGCTVNSVRLIAPDGRCVAQAKLGQSAGHRAVRIE 274
>gi|291288741|ref|YP_003505557.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
12809]
gi|290885901|gb|ADD69601.1| flagellar motor switch protein FliN [Denitrovibrio acetiphilus DSM
12809]
Length = 299
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/293 (13%), Positives = 87/293 (29%), Gaps = 23/293 (7%)
Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
S+ + K+ D D+ +S++ SG + ++ + S
Sbjct: 11 STFTDVAKEVFQSTLNSMFDKDIKVSFSEVSSGGPDDLAGGYEGQVLIIVTEEKS----- 65
Query: 96 FIGCSNNLVITLLE-NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
G L+ + L + + SL +K K +Q A + +
Sbjct: 66 --GLEAGLMFKTADITFLTNLMMMMDEPGKESLEDDDKDAIKELASQALAAVTVPLEEKT 123
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----FVLIIPQETLLKTT 210
+ + + + + ++ + +N L+
Sbjct: 124 QVKVSFRIDDVMVNDAPALFQSDAYMIIDADLGIGDQNTTFRFYTDINLMNLFGGGDDEE 183
Query: 211 LISLSSQNKSENQSEDLIDPFA-----------RKTYQLNVNIDTRINLKKTTLKDVVTL 259
S+ E+ E F ++V + ++ K LKD++T+
Sbjct: 184 PDFGSAFTFPEDDDEPATGGFGGGYGGGSPSNLDLLLDIDVPVSVKMGSTKMFLKDILTM 243
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G +I L N K I E+ V + RI + ++ ++ K
Sbjct: 244 GSGNIIELDESADEPVELVINNKVIARGEVVIVDGYFGFRIKEIVSRAERIKK 296
>gi|254759759|ref|ZP_05211783.1| flagellar motor switch protein [Bacillus anthracis str. Australia
94]
Length = 546
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISIPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
+ L + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|300117350|ref|ZP_07055140.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|298725185|gb|EFI65837.1| flagellar motor switch protein [Bacillus cereus SJ1]
Length = 545
Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/305 (8%), Positives = 96/305 (31%), Gaps = 32/305 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQLN 239
+ L + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEIVTEEIEEEKVVEPVAQPIEFKEVKQMEPVYMDTSILQNVE 480
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+N+ T++D+++L+ + + + N + EL V + ++
Sbjct: 481 MNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGVK 540
Query: 300 ITDRI 304
+T +
Sbjct: 541 VTKSL 545
>gi|229102329|ref|ZP_04233038.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
gi|228681230|gb|EEL35398.1| CheC, inhibitor of MCP methylation [Bacillus cereus Rock3-28]
Length = 547
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/320 (8%), Positives = 98/320 (30%), Gaps = 28/320 (8%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ ++ K + + + + + + ++ V IS + ++ H
Sbjct: 228 VETEIVEEHVEKEHLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRH 287
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ + + + + ++ +T+++ ++ + E P+ L
Sbjct: 288 YDGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEVDPEKELSELELSGI 347
Query: 133 K-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTI 190
K + + + + +++ + +P F + + ++ + + + I N+ I
Sbjct: 348 KEIMNQMMGHAATAMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEI 407
Query: 191 ENV-ASSFVLIIPQETL-LKTTLISLSSQN-----------------------KSENQSE 225
++ S I+P + + + +
Sbjct: 408 GDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVPEEIEEEEIAAPVVQPIEFKEVKQ 467
Query: 226 DLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
+ +N+ T++D+++L+ + + + N +
Sbjct: 468 IEPVYIDTSILQNVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLV 527
Query: 285 YSCELGRVGKNYTIRITDRI 304
EL V + +++T +
Sbjct: 528 AYGELVNVDGFFGVKVTKSL 547
>gi|30261731|ref|NP_844108.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
gi|47526949|ref|YP_018298.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184559|ref|YP_027811.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|52143728|ref|YP_083102.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|65318998|ref|ZP_00391957.1| COG1776: Chemotaxis protein CheC, inhibitor of MCP methylation
[Bacillus anthracis str. A2012]
gi|190566300|ref|ZP_03019218.1| putative flagellar motor switch protein [Bacillus anthracis
Tsiankovskii-I]
gi|196033496|ref|ZP_03100908.1| putative flagellar motor switch protein [Bacillus cereus W]
gi|227815513|ref|YP_002815522.1| putative flagellar motor switch protein [Bacillus anthracis str.
CDC 684]
gi|228945334|ref|ZP_04107689.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229600257|ref|YP_002866132.1| putative flagellar motor switch protein [Bacillus anthracis str.
A0248]
gi|254683220|ref|ZP_05147081.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
gi|254723808|ref|ZP_05185594.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
gi|254734572|ref|ZP_05192284.1| flagellar motor switch protein [Bacillus anthracis str. Western
North America USA6153]
gi|254740981|ref|ZP_05198669.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
gi|254755222|ref|ZP_05207256.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
gi|30255959|gb|AAP25594.1| putative flagellar motor switch protein [Bacillus anthracis str.
Ames]
gi|47502097|gb|AAT30773.1| putative flagellar motor switch protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49178486|gb|AAT53862.1| flagellar motor switch protein, putative [Bacillus anthracis str.
Sterne]
gi|51977197|gb|AAU18747.1| chemotaxis protein [Bacillus cereus E33L]
gi|190562435|gb|EDV16402.1| putative flagellar motor switch protein [Bacillus anthracis
Tsiankovskii-I]
gi|195993930|gb|EDX57886.1| putative flagellar motor switch protein [Bacillus cereus W]
gi|227003974|gb|ACP13717.1| putative flagellar motor switch protein [Bacillus anthracis str.
CDC 684]
gi|228814306|gb|EEM60572.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229264665|gb|ACQ46302.1| putative flagellar motor switch protein [Bacillus anthracis str.
A0248]
Length = 546
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
+ L + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|229058363|ref|ZP_04196747.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
gi|228719872|gb|EEL71462.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH603]
Length = 548
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 30/335 (8%), Positives = 103/335 (30%), Gaps = 31/335 (9%)
Query: 1 MRGQSIHKNTSPLH---PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
+ G + P ++ K + + + + + + ++
Sbjct: 214 LSGGVEEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQP 273
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE 117
V IS + ++ H + + + + + ++ +T+++ ++ + E
Sbjct: 274 VTISTPNVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGE 333
Query: 118 TIPQLYNRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNR 175
P+ L K + + + + +++ + +P F + + ++
Sbjct: 334 IDPEKELSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGES 393
Query: 176 LSNEFVTTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------- 218
++ + + I N+ I ++ S I+P + L
Sbjct: 394 MAVDELVQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEI 453
Query: 219 --------KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + + + +N+ T++D+++L+ + +
Sbjct: 454 PAPVVQPIEYKEVKQVEPVYMDASILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDE 513
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ N + EL V + +++T +
Sbjct: 514 DIDEPIQIYVNDVLVAYGELVNVDGFFGVKVTKSL 548
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 3/234 (1%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
I + + + ++ V I+ + + V +
Sbjct: 28 DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87
Query: 93 SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ ++ +++ + ++ + E + + ++ + + + +++
Sbjct: 88 MENLLVLKQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147
Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
T + SP ++ + ++K + N V ++ + I+N V S V ++ E +
Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
L E + ++ + + + +V + +K L ++ + IG
Sbjct: 208 INKLLQLSGGVEEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261
>gi|228984815|ref|ZP_04144987.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775013|gb|EEM23407.1| CheC, inhibitor of MCP methylation [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 547
Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats.
Identities = 28/308 (9%), Positives = 93/308 (30%), Gaps = 36/308 (11%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLII 201
+++ + +P F + + +E V I N+ I ++ S I+
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQIL 419
Query: 202 PQETL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-Y 236
P + + + +
Sbjct: 420 PISEAKEMVRRLLYPMMEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQ 479
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ +N+ T++D+++L+ + + + N + EL V +
Sbjct: 480 NVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFF 539
Query: 297 TIRITDRI 304
+++T +
Sbjct: 540 GVKVTKSL 547
>gi|149203625|ref|ZP_01880594.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
gi|149142742|gb|EDM30784.1| hypothetical protein RTM1035_06153 [Roseovarius sp. TM1035]
Length = 334
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 33/292 (11%), Positives = 93/292 (31%), Gaps = 14/292 (4%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
H ++ R+ D +++ L + L + ++ +H+
Sbjct: 10 HSSVIQRMAQAARDGSDSRQMTPVKALRLS--LARAADTLFGLGLTVATVEQMRVPLAHV 67
Query: 74 IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
S + + + + + + L+E S R+ + +
Sbjct: 68 GRSLGDAGLLVLLEGDG-GARGALCLDSQFLAGLIEVQTTGSVR-PGLARPRAATRTDAA 125
Query: 134 LAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTN--RLSNEFVTTINMNMT 189
+ I + ++ ++ P ++ L+ + + + + +++
Sbjct: 126 MVAPLIDAVLTEFESQLAQEHDAPPPRRFGFGDMVEDLRGLSLLLVAPDFELLRLTVDLG 185
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
L++P + +S K N + + V +D +
Sbjct: 186 PGAKTGRLDLLLPV-----IASPARASSGKIANTKIEAPANLEQVVNNAPVMLDAVMARL 240
Query: 250 KTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ L+D++ LK G ++PF ++ G + + ELG++ +R+
Sbjct: 241 RLPLRDILALKPGDLLPFQRETLNDTQLVGTRGHIVATAELGQMNGLRALRL 292
>gi|229155302|ref|ZP_04283413.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
gi|228628227|gb|EEK84943.1| CheC, inhibitor of MCP methylation [Bacillus cereus ATCC 4342]
Length = 547
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 28/308 (9%), Positives = 93/308 (30%), Gaps = 36/308 (11%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYD--IDYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLII 201
+++ + +P F + + +E V I N+ I ++ S I+
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMKVDELV-QITFNLEIGDLLQSKMYQIL 419
Query: 202 PQETL-LKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-Y 236
P + + + +
Sbjct: 420 PISEAKEMVRRLLYPMMEEEEEIITEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQ 479
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ +N+ T++D+++L+ + + + N + EL V +
Sbjct: 480 NVEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFF 539
Query: 297 TIRITDRI 304
+++T +
Sbjct: 540 GVKVTKSL 547
>gi|161520304|ref|YP_001583731.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
multivorans ATCC 17616]
gi|160344354|gb|ABX17439.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
multivorans ATCC 17616]
Length = 443
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/294 (12%), Positives = 77/294 (26%), Gaps = 23/294 (7%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
L P+ G D I ++L L + V++ + H
Sbjct: 158 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 216
Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
L W + + + + AS + + +
Sbjct: 217 -----GSPSALR-FELRRADGAWRCHGAVLFDAPDALAV----FFASAPAARPDAHAAYA 266
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+ L + + +E ++ + R+ I
Sbjct: 267 NLPVPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVGRVPAAPAWEITGRP 325
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ + + +P L T + + + + S L V++ +
Sbjct: 326 SGSRLTVERIREMP---LEPTRTDTPPATGAAHDASPADAPR---ALDGLAVDLRFELPP 379
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ L+ G VI L ANG I + L VG+ +R+
Sbjct: 380 TSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 433
>gi|49477311|ref|YP_035851.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49328867|gb|AAT59513.1| chemotaxis protein cheC [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 546
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
+ L + + + +
Sbjct: 421 ISEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|229017018|ref|ZP_04173938.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
gi|229023200|ref|ZP_04179711.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
gi|228738125|gb|EEL88610.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1272]
gi|228744289|gb|EEL94371.1| CheC, inhibitor of MCP methylation [Bacillus cereus AH1273]
Length = 548
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 28/329 (8%), Positives = 101/329 (30%), Gaps = 28/329 (8%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ I + + ++ K + + + + + + ++ V IS
Sbjct: 220 EGIEEQAEIMEAEVVEEQIEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVSISTP 279
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ ++ H + + + + + ++ +T+++ ++ + E P+
Sbjct: 280 NVEAINVRHYNGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339
Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181
L K + + + + +++ + +P F + + ++ + + +
Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGEAMEVDEL 399
Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218
I N+ I ++ S I+ + L
Sbjct: 400 VQITFNIEIGDLLQSKMYQILSIAEAKEMVRRLLYPMVEEQEEIVEEVIEEEKIPAPAIQ 459
Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + + + +N+ T++D+++L+ + +
Sbjct: 460 PIEYQEVKQVEPVYMDASILKNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ N + EL V + +++T +
Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKVTKSL 548
>gi|302389673|ref|YP_003825494.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermosediminibacter oceani DSM 16646]
gi|302200301|gb|ADL07871.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermosediminibacter oceani DSM 16646]
Length = 362
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/351 (8%), Positives = 90/351 (25%), Gaps = 46/351 (13%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
+ + L L+ + +G + + V I+
Sbjct: 8 SQEEINELLNKSLSNQDEGEFLSQEEIDALGEIGNISIGTSATTLYTLLRNKVTITTPDV 67
Query: 66 QSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + F+ + + + + ++G +
Sbjct: 68 ALTTVEKLQEKYSIPFIAIIVDHTEGIEGSSILIMKEEDAKIIADLMMGGDGRNTEVELD 127
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
+ + + + + L+ + SP + + +E + I
Sbjct: 128 ELRLSAVGEAMNQMMGSSATSLSTMLKKNINISPPTLKRVNFADETLQSYFKKDEKIVKI 187
Query: 185 NMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQN----KSENQSEDLIDPFARK----- 234
+ M + + + S +L++ K +S ++ +
Sbjct: 188 SFKMEVGDLIESEIMLLMTIPFAKKLVRELMSISKGIPFETSKSDDTDEHILENAPPEPQ 247
Query: 235 -----------------------------------TYQLNVNIDTRINLKKTTLKDVVTL 259
+ + I + +K+++ +
Sbjct: 248 KPFNEKKAEKVSVKPVELEDFGEAETSGKKSSLDLIMDVPLEISVELGRTVKKIKEILEI 307
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G +I + NGK I E+ + +++ +RIT+ +N +K
Sbjct: 308 GPGSIIELEKLAGEPVDILVNGKLIARGEVVVIDESFGVRITEILNSIEKV 358
>gi|15615008|ref|NP_243311.1| flagellar motor switch protein [Bacillus halodurans C-125]
gi|10175065|dbj|BAB06164.1| flagellar motor switch protein [Bacillus halodurans C-125]
Length = 401
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/349 (8%), Positives = 86/349 (24%), Gaps = 68/349 (19%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASL 88
+ +G + ++ VDI+ + F +
Sbjct: 49 VEKDALGEIGNISFGSAATALSTLLNEKVDITTPQVSVIHKDQLEKEFPQPHVAVHVDYT 108
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + + +LG + N + ++ + + S ++
Sbjct: 109 EGFEGMNLLVIRTKDAAIIADLMLGGDGLNPEEELNDMHISAVQEAMNQMMGSASTSMST 168
Query: 149 CISTTQESSPN------------------------------------------LEDFYDI 166
+ + SP + +
Sbjct: 169 IFNKRIDISPPGVNMLDVGNDQGTDRVPEGDVLIKVSFRLRIGELIDSSIMQLVTVPFAK 228
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225
+ N +E + M + + + P + + ++ S+
Sbjct: 229 KMVDDLMNPAQDEVAGAVAMEVDQQPRQETVNEAPPTNQTDPVHMQQPTQGGYRQSMSQP 288
Query: 226 ----DLIDPFA--------------------RKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
+ + + + K ++KD+++
Sbjct: 289 PLQTRRQANVQPAAFTNFEHPELNDTEAGNLDMLLDIPLQVTVELGRTKRSIKDILSFTQ 348
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G +I + N K I E+ + +N+ +R+T+ ++ ++
Sbjct: 349 GSIIELDKLAGEPVDILVNQKLIAKGEVVVIDENFGVRVTEILSQRERI 397
>gi|212639554|ref|YP_002316074.1| flagellar motor switch protein [Anoxybacillus flavithermus WK1]
gi|212561034|gb|ACJ34089.1| Flagellar motor switch protein FliY [Anoxybacillus flavithermus
WK1]
Length = 383
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/342 (8%), Positives = 93/342 (27%), Gaps = 61/342 (17%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ + + + + F +
Sbjct: 40 QDALGEIGNISFGSSATALSMLLNQKVEITTPNVSLVERAKVAEEFPHPYVAIQVSYTEG 99
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + + ++G P + + ++ + + + ++
Sbjct: 100 FLGTNLLVIKQSDAAIIADLMMGGDGTNPPAFMDEIQLSAVQEAMNQMMGSAATSMSTIF 159
Query: 151 S------------------------------TTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
S + + D + ++ + E
Sbjct: 160 SKKVDISPPSLHLLDLKEGEGFEYLPPDDVLVKVSFRLKVGNLIDSNIMQLLPIHFAKEL 219
Query: 181 VT-TINMNMTIENVASSFVLIIPQETL-----------------------------LKTT 210
V +N + T +++ P +T
Sbjct: 220 VENLLNPSSTKTETSATINTNEPHQTAPSAQTKPAPSSAQQTQKEAPQHFGTGAVQQPVN 279
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ ++ + + + + + + K +++D+++L G +I
Sbjct: 280 VQPVAFASFEPAPLPEAESRNLDMLLDIPLQVTVELGRTKRSVQDILSLSSGSIIELDKL 339
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ N K I E+ + +N+ +R+T I+ + K
Sbjct: 340 AGEPVDILVNNKLIAKGEVVVIDENFGVRVTSIISQSDRLNK 381
>gi|167037656|ref|YP_001665234.1| flagellar motor switch protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116071|ref|YP_004186230.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856490|gb|ABY94898.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929162|gb|ADV79847.1| flagellar motor switch protein FliN [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 375
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/344 (11%), Positives = 96/344 (27%), Gaps = 58/344 (16%)
Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV- 82
+ + I +G + + V I+ + + F ++
Sbjct: 29 GKELTEEEQDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYIG 88
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQ 141
+ + V+ + + ++G + ++ + LS + + + I
Sbjct: 89 VEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKVEDGEITDLHLSAIGEA-MNQMIGS 147
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM--------------- 186
+ L+ ++ T SP D V I
Sbjct: 148 AATSLSTLLNKTINISPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVGEIIDSEIMQL 207
Query: 187 ----------------------NMTIENVASSFVLIIPQETLLKTTLISLSSQ------- 217
+T + +S+ ++ ++ + IS +
Sbjct: 208 LPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISPGGKVTKKEQK 267
Query: 218 -----------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
++ + + + I + K +KD++ L G +I
Sbjct: 268 VNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDILELSEGSIIE 327
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ ANGK I E+ + +N+ +RI D ++ ++
Sbjct: 328 LDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371
>gi|196039140|ref|ZP_03106447.1| putative flagellar motor switch protein [Bacillus cereus
NVH0597-99]
gi|301053268|ref|YP_003791479.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|196030285|gb|EDX68885.1| putative flagellar motor switch protein [Bacillus cereus
NVH0597-99]
gi|300375437|gb|ADK04341.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 546
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/306 (8%), Positives = 96/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN-----------------------KSENQSEDLIDPFARKT-YQL 238
+ L + + + +
Sbjct: 421 ITEAKEMVRRLLYPMVEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQNV 480
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 481 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 540
Query: 299 RITDRI 304
++T +
Sbjct: 541 KVTKSL 546
>gi|307264880|ref|ZP_07546442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306920138|gb|EFN50350.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 375
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/354 (11%), Positives = 98/354 (27%), Gaps = 58/354 (16%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
++T + + I +G + + V I+ + +
Sbjct: 19 EESTENQVTNLKELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEEL 78
Query: 74 IHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
F +V + + V+ + ++G + ++ + LS +
Sbjct: 79 KKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTNLMMGGEGKVEDGEITDLHLSAIG 138
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM----- 186
+ + I + L+ ++ T SP D V I
Sbjct: 139 EA-MNQMIGSAATSLSTLLNKTINISPPKAFIVDFTASLPTDISFPEGDVVKIAFKMEVG 197
Query: 187 --------------------------------NMTIENVASSFVLIIPQETLLKTTLISL 214
+T + +S+ ++ ++ + IS
Sbjct: 198 EIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISP 257
Query: 215 SSQ------------------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ ++ + + + I + K +KD+
Sbjct: 258 GGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDI 317
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L G +I + ANGK I E+ + +N+ +RI D ++ ++
Sbjct: 318 LELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371
>gi|196044986|ref|ZP_03112219.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
gi|196023988|gb|EDX62662.1| putative flagellar motor switch protein [Bacillus cereus 03BB108]
Length = 547
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/307 (8%), Positives = 96/307 (31%), Gaps = 34/307 (11%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN------------------------KSENQSEDLIDPFARKT-YQ 237
+ L + + +
Sbjct: 421 ITEAKEMVRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQN 480
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ +N+ T++D+++L+ + + + N + EL V +
Sbjct: 481 VEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFG 540
Query: 298 IRITDRI 304
+++T +
Sbjct: 541 VKVTKSL 547
>gi|229827386|ref|ZP_04453455.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
49176]
gi|229788324|gb|EEP24438.1| hypothetical protein GCWU000182_02774 [Abiotrophia defectiva ATCC
49176]
Length = 370
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/361 (11%), Positives = 98/361 (27%), Gaps = 60/361 (16%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G + L G + + + ++ V+I
Sbjct: 14 LGGMGEDSGSDSSDTQTLG---GADPLSGEEKDAIGEISNISMGTAATTLSTLLNQRVNI 70
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + I S+ VF Q S + N + V + + ++G S +
Sbjct: 71 TTPNVSIANWDDISQSYDRPCVFIQISYIEGLDGNNILILREKDVKIITDLMMGGSGTDV 130
Query: 120 PQLYNRSLSTVEK-KLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNR 175
L + + + + ++ + + SP +L D + +
Sbjct: 131 DATELTELHLSAICEAMNQMMGSAATSISSVLEKKVDISPPTASLIDLEGTIDEEGLGDF 190
Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLL--------------------------- 207
L +FV + + I + + S + + P +
Sbjct: 191 LKGQFV-KVAFRLEIGSLIDSELMQLYPIDFAKELYSKFMSSTETEQPAPAAQQPAAPTP 249
Query: 208 -----------------------KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+ Q N + + + + +
Sbjct: 250 QPVAQQPTAPAPQPMPTPAMPSQPVNVAPAQFQAFDTNINPLMQQENIGLIMDVPLEVTV 309
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ T+K+++ G +I L NGK + E+ + N+ IRIT+ +
Sbjct: 310 ELGRTNKTIKEILDFSPGTIIELNKLAGEAIDLLVNGKYVAKGEVVVIEDNFGIRITEIV 369
Query: 305 N 305
Sbjct: 370 K 370
>gi|152975143|ref|YP_001374660.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023895|gb|ABS21665.1| CheC, inhibitor of MCP methylation [Bacillus cytotoxicus NVH
391-98]
Length = 554
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/325 (9%), Positives = 98/325 (30%), Gaps = 40/325 (12%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
L+ + + + + + + + ++ V IS + ++
Sbjct: 234 ELVEEPPFQEKLTQEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVETIDVR-YYD 292
Query: 76 SFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK- 133
FV S + ++ +T+++ ++ + E + L+ +E
Sbjct: 293 GVPVPFVILNVDFVEGLKSENVFVFTKDVALTMVDLMMMGTGEI---DSEQELTEMELSG 349
Query: 134 ---LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMT 189
+ + + + +++ + +P F + + ++ ++ + I N+
Sbjct: 350 VKEIMNQMMGHAATAMSEMFMEKMDITPPTVKFVTLKEEMEYLGKEADSDELVQITFNLE 409
Query: 190 IEN-VASSFVLIIPQETLLKTTLISL-------SSQNKSENQSEDLIDPF---------- 231
I + V S I+P + L + + E+ ++
Sbjct: 410 IGDLVQSKMYQILPLSEAKEMVKRLLHVDVEESIELEEEASIKEENVEEIPEPAVEPIEL 469
Query: 232 ------------ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ +N+ T++D+++L + +
Sbjct: 470 LEIHTGEPEYIDTSILQNVEMNVRFVFGSTVRTIEDILSLHENDAVVLDEEVDEPIRIYV 529
Query: 280 NGKEIYSCELGRVGKNYTIRITDRI 304
N + EL V + +++T +
Sbjct: 530 NNVLVAYGELVNVDGFFGVKVTKSL 554
>gi|118477167|ref|YP_894318.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|225863590|ref|YP_002748968.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
gi|229183923|ref|ZP_04311139.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
gi|118416392|gb|ABK84811.1| chemotaxis protein [Bacillus thuringiensis str. Al Hakam]
gi|225785824|gb|ACO26041.1| putative flagellar motor switch protein [Bacillus cereus 03BB102]
gi|228599575|gb|EEK57179.1| CheC, inhibitor of MCP methylation [Bacillus cereus BGSC 6E1]
Length = 547
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/307 (8%), Positives = 96/307 (31%), Gaps = 34/307 (11%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 244 QEEKDVLGEIANISIGSASTVLSTLLNQPVSISTPNVEAINVRHYDGVPVPFVILNVDFV 303
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + LS +E + + + +
Sbjct: 304 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDSEKELSELELSGIKEIMNQMMGHAAT 360
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 361 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 420
Query: 203 QETLLKTTLISLSSQN------------------------KSENQSEDLIDPFARKT-YQ 237
+ L + + +
Sbjct: 421 ITEAKEMVRRLLYPMVEEEEEIVTEEIEEEKVVEPVVQPIEFKEVKQMEPVYMDTSILQN 480
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ +N+ T++D+++L+ + + + N + EL V +
Sbjct: 481 VEMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFG 540
Query: 298 IRITDRI 304
+++T +
Sbjct: 541 VKVTKSL 547
>gi|326939345|gb|AEA15241.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 318
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/306 (8%), Positives = 95/306 (31%), Gaps = 33/306 (10%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ + + + + + ++ V IS + ++ H + + +
Sbjct: 16 QEEKDVLGEIANISIGSASTVLSTLLNQPVTISTPNVEAINVRHYDGVPVPFVILNVDFV 75
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK----LAKRTIAQISA 144
+ + ++ +T+++ ++ + E + L+ +E + + + +
Sbjct: 76 EGLKNENVFVFTKDVALTMVDLMMMGTGE---VDPEKELTELELSGIKEIMNQMMGHAAT 132
Query: 145 VLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENV-ASSFVLIIP 202
+++ + +P F + + ++ + + + I N+ I ++ S I+P
Sbjct: 133 AMSEMFQEKMDMTPPNVKFVTLKEEMEYLGESMEVDELVQITFNLEIGDLLQSKMYQILP 192
Query: 203 QETL-LKTTLISLSSQN----------------------KSENQSEDLIDPFARKT-YQL 238
+ + + + +
Sbjct: 193 ISEAKEMVRRLLYPMVEEEEIATEEIEEEKIVEPVVQPIEFKEVKQMEPVYMDTSILQNV 252
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+N+ T++D+++L+ + + + N + EL V + +
Sbjct: 253 EMNVKFVFGSTVKTIQDILSLQENEAVVLDEDIDEPIRIYVNDVLVAYGELVNVDGFFGV 312
Query: 299 RITDRI 304
++T +
Sbjct: 313 KVTKSL 318
>gi|85710186|ref|ZP_01041251.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
gi|85688896|gb|EAQ28900.1| hypothetical protein NAP1_14913 [Erythrobacter sp. NAP1]
Length = 343
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 72/292 (24%), Gaps = 28/292 (9%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
R + I L + L + +++S + +
Sbjct: 27 RGPRPEERAQAISTWCRDLAQELAQELAPLLS---GGRLNVSIAEPEQVGAQDVFDLIGP 83
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
V I L + G + + L L ++
Sbjct: 84 IAVNCLLRCGEGDQTVLFSLDYATAIGLTDCSFGGEGTLPDEAPS-QLPHSAAMLVEQFA 142
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN------- 192
A ++ + ++ + + + + ++ V + +
Sbjct: 143 ATVAQAI--VMTNGSAERARGDVLVRSESVTRLKPFGADAEVALFKLTINRGESANWCAL 200
Query: 193 ---VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ ++P ++ SL E + + ++ +
Sbjct: 201 FAVASDRVDGLLPGLEAVRIRSRSLEGSGDFE----------RSGFAAMPLTLEAVVGEI 250
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
TL + L+ G IP L ++GR+ N +R+T
Sbjct: 251 DLTLGRLEQLRPGDKIPLTISRDLP--LRIGETVFARGKVGRLDSNLALRVT 300
>gi|326389470|ref|ZP_08211037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus JW 200]
gi|325994475|gb|EGD52900.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus JW 200]
Length = 375
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/354 (11%), Positives = 98/354 (27%), Gaps = 58/354 (16%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
++ + + I +G + + V I+ + +
Sbjct: 19 EESTENQVANLKELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEEL 78
Query: 74 IHSFKENFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
F +V + + V+ + + ++G + ++ + LS +
Sbjct: 79 KKEFNIPYVGVEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKVEDGEITDLHLSAIG 138
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM----- 186
+ + I + L+ ++ T SP D V I
Sbjct: 139 EA-MNQMIGSAATSLSTLLNKTINISPPKAFVVDFTASLPTDISFPEGDVVKIAFKMEVG 197
Query: 187 --------------------------------NMTIENVASSFVLIIPQETLLKTTLISL 214
+T + +S+ ++ ++ + IS
Sbjct: 198 EIIDSEIMQLLPLDFAKELVQSVLSKNEEKPSEVTFQEESSNVIIENDEKIVETANNISP 257
Query: 215 SSQ------------------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ ++ + + + I + K +KD+
Sbjct: 258 GGKVTKKEQKVNVSPVVFQSFDEDSSSKGKKDKENLDLILDVPLTITVELGKTKKLIKDI 317
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L G +I + ANGK I E+ + +N+ +RI D ++ ++
Sbjct: 318 LELSEGSIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371
>gi|86137304|ref|ZP_01055881.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193]
gi|85825639|gb|EAQ45837.1| hypothetical protein MED193_05579 [Roseobacter sp. MED193]
Length = 450
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 19/289 (6%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
LAR + +K S ++ L + E+ DL + + + ++
Sbjct: 17 LARKLAASKESGAAQK-GSFTLKALRRSLARAASEQCDLPLAVLAARQVNRVPEDLVDDL 75
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ + + LV L++ R+ + + +
Sbjct: 76 SDKDLLVVLDGPNGR-LGAATMDAALVTALIQKQTIGQIMGKA-PAERNYTPTDAAMTAE 133
Query: 138 TIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI--ENV 193
+ + A ++ + ++ I+ ++ L E I++ + + +
Sbjct: 134 FLEKSFAKVHALLQGEKDQLIFSGYRYGAQIEDVRSLILGLEGEDYRLISLTVDLAVGAM 193
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
LI+P+ TL + L + A + + + + L
Sbjct: 194 QGELKLILPEPTLEELGLSGAKA-----------GSSLAGGMGAMRAELSAILCKVRVPL 242
Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRIT 301
+ K+G+V+P + G+ I LG++ +R+T
Sbjct: 243 NEFSAWKVGEVLPLDQAFLYETDLIDIGGRSISKGRLGQLNGARAVRLT 291
>gi|229132544|ref|ZP_04261393.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
gi|228650890|gb|EEL06876.1| CheC, inhibitor of MCP methylation [Bacillus cereus BDRD-ST196]
Length = 548
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/329 (8%), Positives = 102/329 (31%), Gaps = 28/329 (8%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
+ I + ++ K + + + + + + ++ V IS
Sbjct: 220 EEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGSASTVLSTLLNQPVTISTP 279
Query: 64 SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ ++ H + + + + + ++ +T+++ ++ + E P+
Sbjct: 280 NVEAINVRHYEGVPVPFVILNVDFVEGLKNENVFVFTKDVALTMVDLMMMGTGEIDPEKE 339
Query: 124 NRSLSTVEKK-LAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFV 181
L K + + + + +++ + +P F + + ++ ++ + +
Sbjct: 340 LSELELSGIKEIMNQMMGHAATAMSEMFKEKMDMTPPDVKFVSLKEEMEYLGESMAVDEL 399
Query: 182 TTINMNMTIENV-ASSFVLIIPQETLLKTTLISLSSQN---------------------- 218
I N+ I ++ S I+P + L
Sbjct: 400 VQITFNLEIGDLLQSKMYQILPISEAKEMVRRLLYPMVEEQEEIVEEVVEEEEIPAPVVQ 459
Query: 219 --KSENQSEDLIDPFARKT-YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + + + +N+ T++D+++L+ + +
Sbjct: 460 PIEYKEVKQVEPVYMDTSILQNVEMNVKFVFGSTVRTIQDILSLQENEAVVLDEDIDEPI 519
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ N + EL V + +++T +
Sbjct: 520 QIYVNDVLVAYGELVNVDGFFGVKMTKSL 548
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/234 (9%), Positives = 78/234 (33%), Gaps = 3/234 (1%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
I + + + ++ V I+ + + V +
Sbjct: 28 DILGEIANISFGSASTVLSTILNRQVSITAPQVELVDLYDTSDVEIPHVVLNIHFTKGLD 87
Query: 93 SNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ ++ +++ + ++ + E + + ++ + + + +++
Sbjct: 88 MENLLVLQQDVALSIADLMMMGTGEVEEGKELGELELSAVQEAMNQMMGFAATSMSEFFQ 147
Query: 152 TTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
T + SP ++ + ++K + N V ++ + I+N V S V ++ E +
Sbjct: 148 DTVDMSPPTIKVVQLTEEMEKISGINGNNMVVKVSFELKIDNLVNSQLVQVVSVEHAKRM 207
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
L + ++ + + + +V + +K L ++ + IG
Sbjct: 208 INKLLQLSGGVAEEIDEPAEVQETEIVEEHVEKEQLTQEEKDVLGEIANISIGS 261
>gi|150021179|ref|YP_001306533.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
gi|149793700|gb|ABR31148.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
Length = 370
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/335 (11%), Positives = 96/335 (28%), Gaps = 56/335 (16%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KENFVFSQASLSS 90
+ + +G + + VDI+ + + K I +N V S
Sbjct: 32 KDMFGEIGNIIMGSGTTALSTLLGRKVDITVPAVEIKKLKEIREEVKGKNAVVSINFKGE 91
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ V + ++G + + + + + + L+ +
Sbjct: 92 IEGLNALVLPQMAVARIANIMMGGDGNVETDEVDEISLSAVSEAMNQMMGAAATSLSDML 151
Query: 151 STTQESSPNLEDF--YDIDYLKKNTNRL-SNEFVTTINMNM---TIENVASSFVLIIPQE 204
T + +P + +D + +K ++ V +N + +E + P
Sbjct: 152 KKTVDITPPTVELLDFDEEDVKFPPVVSNDDDIVAKVNFKLEIEGLEPADFFLTMSPPFV 211
Query: 205 TLL----------------------------------------------KTTLISLSSQN 218
L ++ + Q+
Sbjct: 212 KKLYRLLFGEEKKQASPQQQAQPSTPQQAPTTENENIQNVKMSENIQKNPVSVSPVQFQS 271
Query: 219 KSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + +N+ + K TLK V+ L +G +I
Sbjct: 272 FESGGIVKSTSEIPERIKALLDIPLNVVVELGKTKLTLKQVMELSVGSLIELDKLTGEPV 331
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RIT+ ++ ++
Sbjct: 332 DIIVNGKLIARGEVVVIDENFGVRITEIVSPQERF 366
>gi|289578421|ref|YP_003477048.1| chemotaxis protein CheC [Thermoanaerobacter italicus Ab9]
gi|289528134|gb|ADD02486.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter italicus Ab9]
Length = 375
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/348 (12%), Positives = 94/348 (27%), Gaps = 58/348 (16%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
+ + + I +G + + V I+ + + F
Sbjct: 25 QFRSGSELTEEEKDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNI 84
Query: 80 NFV-FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
++ + V+ + + ++G E + + +
Sbjct: 85 PYIGVEVEYTEGLKGRNLLILKKEDVLKMTDLMMGGEGEVEEGDITDLHLSAISEAMNQM 144
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSF 197
I + L+ ++ T SP D V I M + + S
Sbjct: 145 IGSAATSLSTLLNMTINISPPKAFIVDFTVFLPTDISFPEGDVVKIAFKMEVGEIIDSEI 204
Query: 198 VLIIP--------QETLLKTTLISLSSQNKSENQS------------------------- 224
+ ++P L K S + ++ EN S
Sbjct: 205 MQLLPFDFAKELVHSVLSKNEEKSPQATSQEENASAIIESDEKSVETDNNILKEEKTTKK 264
Query: 225 ----------------------EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
++ + + + I + K +KD++ L G
Sbjct: 265 KQKVNASPVVFQSFDEEPSIEGKEEKENL-ELILDVPLTITVELGRTKKLIKDILELSEG 323
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+I + ANGK I E+ + +N+ +RI D ++ ++
Sbjct: 324 SIIELDKLAGEPVDILANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 371
>gi|189353517|ref|YP_001949144.1| type III secretion system apparatus protein [Burkholderia
multivorans ATCC 17616]
gi|189337539|dbj|BAG46608.1| type III secretion system apparatus protein [Burkholderia
multivorans ATCC 17616]
Length = 385
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/294 (12%), Positives = 77/294 (26%), Gaps = 23/294 (7%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
L P+ G D I ++L L + V++ + H
Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158
Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
L W + + + + AS + + +
Sbjct: 159 -----GSPSALR-FELRRADGAWRCHGAVLFDAPDALAV----FFASAPAARPDAHAAYA 208
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+ L + + +E ++ + R+ I
Sbjct: 209 NLPVPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVGRVPAAPAWEITGRP 267
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ + + +P L T + + + + S L V++ +
Sbjct: 268 SGSRLTVERIREMP---LEPTRTDTPPATGAAHDASPADAPR---ALDGLAVDLRFELPP 321
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ L+ G VI L ANG I + L VG+ +R+
Sbjct: 322 TSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 375
>gi|304316896|ref|YP_003852041.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778398|gb|ADL68957.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 370
Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/337 (12%), Positives = 93/337 (27%), Gaps = 57/337 (16%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV-FSQASL 88
+ + +G + + V I+ + ++ F +V
Sbjct: 32 EEQDVLGEIGNISFGTSATTLFTLLRNKVTITTPKVSIINWENLKKEFNIPYVGVEVEYT 91
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
N + V+ + + ++G T ++ LS + + + I S L+
Sbjct: 92 EGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEA-MNQMIGSASTSLS 150
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206
I + SP D + + +V I M + + S + +IP
Sbjct: 151 TLIGESINISPPRAFVVDFNKGLPENISFPDGYVVKIAFKMVVGEIIDSEIMQLIPIAFA 210
Query: 207 LK-------------TTLISLSSQNKS--------------------------------- 220
+ Q+
Sbjct: 211 KRLVEQVMSKNVENSPKESFQGVQDDDIIKTGTKGINNEFSDEVKSTVKHKAEKVDVKPV 270
Query: 221 -------ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
E++ + +N+ + K +KD++ L G +I
Sbjct: 271 IFREFDDEDEPTTAEKENINLIMDIPLNVTVELGRTKKLIKDILELNEGSIIELDKLAGE 330
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RI D + ++
Sbjct: 331 PVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 367
>gi|188586032|ref|YP_001917577.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350719|gb|ACB84989.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 422
Score = 99.3 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/360 (10%), Positives = 91/360 (25%), Gaps = 78/360 (21%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
T + +G + ++ V I+ + ++ + F + V + L
Sbjct: 62 TEKDTVGEIGNISMGTAATTLSVLLNQKVSITTPRVEVTDYATLREEFPKPHVAVEVEYL 121
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHE--TIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + ++G ++ LS V + + + S +
Sbjct: 122 EGLEGINVLILKQEDAKMIANLMMGGDGTDIAEGEIEEFHLSAVGEA-MNQMMGSASTSM 180
Query: 147 NQCIST-----------------------------TQESSPNLEDFYDIDYLKKNTNRLS 177
+ + D D + ++ +
Sbjct: 181 SDMFDKTINISPPSVKMLDLGSEEALEELPKEPMIKVAFDLKIGDLIDSEIMQLIPFEFA 240
Query: 178 NEFVTTINMNMTIENVASSFVLII-------------------PQETLLKTTL------- 211
+ V ++ + E A + P+
Sbjct: 241 KDMVVSLTGDSAEEVSAGQQEMAASSEGTAAAKPQAPTQTGPGPESGQSPEREVSTQGQP 300
Query: 212 ------ISLSSQNKSENQSEDLIDPFA-------------RKTYQLNVNIDTRINLKKTT 252
Q ++ P + + + + K
Sbjct: 301 TGQGEQQMKQEQQPKKDYQPVEFSPLEGHQSAAKGENSNIELIMDVPLEVTVELGQTKKK 360
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+++++ L G +I + NGK I E+ + +N+ IRIT+ I+ ++ K
Sbjct: 361 IQEILELVPGSIIELDKIAGEPVDIKVNGKLIAKGEVVVIDENFGIRITEIISPVERINK 420
>gi|254454295|ref|ZP_05067732.1| Surface presentation of antigens protein [Octadecabacter
antarcticus 238]
gi|198268701|gb|EDY92971.1| Surface presentation of antigens protein [Octadecabacter
antarcticus 238]
Length = 330
Score = 98.9 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 88/303 (29%), Gaps = 15/303 (4%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
++PIL +L ++ ++ L + + L V + S +
Sbjct: 3 AINPILAQKLGLTQAPPVAQGAQPATPMRQMRRALGRAADKAAGLSVSVLGISEEDMDAE 62
Query: 72 HIIHSFKENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+I E +V S + L L+E S P R ++ V
Sbjct: 63 SLIEGGPEGWVVLGLRDGSLAGLTGLFLLDQPLRSALVEMQTMGSL-LPPSDDQRRVTRV 121
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN--TNRLSNEFVTTINMNM 188
+ + +Q+ A L + + P D ID L+ N + I + M
Sbjct: 122 DAVMTLPFASQVLAELAEVGFGAADLEPAAYDIGPIDDLRTAGLVMVQGNYRICRITIQM 181
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
++ + ++ S + +D +
Sbjct: 182 GGGETQGEMLIAM--------RPKVSVVTAPVKDTSG-WSVALRDAVQEAPAELDAILTR 232
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRITD-RINF 306
+ + ++GQV+ L+ G I + LG+V +R+ R+
Sbjct: 233 MTMPIHKLEGFEVGQVLNLAGTTVGSVTLTGPGGIIITTARLGQVAGKRAVRVQHSRVEL 292
Query: 307 DQK 309
Sbjct: 293 QDD 295
>gi|291277481|ref|YP_003517253.1| putative flagellar motor switch protein [Helicobacter mustelae
12198]
gi|290964675|emb|CBG40530.1| putative flagellar motor switch protein [Helicobacter mustelae
12198]
Length = 279
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/247 (15%), Positives = 93/247 (37%), Gaps = 16/247 (6%)
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
S + + ++ + +L L + ++G E+ + + L +++ +
Sbjct: 41 PPYVFISIEAKGDFGADLGMLMPIDLATALADTMVGGEGESKESVDDDDLDAIKE-INSN 99
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+S LN + S + ++ I + ++F + ++ + S F
Sbjct: 100 IFGALSTSLNSQ-KKLPKLSFSCKNVASITNEQDL-----SDFARVYDFAFSLNRIKSHF 153
Query: 198 VLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARK-------TYQLNVNIDTRINLK 249
+L+ +E + + + ++E +++ + +N+ RI K
Sbjct: 154 LLLCTKEFEENFSGKKEEASSPQTEEIDSAPGQNLSQEEMKNIGMLLDVKLNVKVRIGQK 213
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ LKDV ++ IG VI + + K I E+ V N+ I++T+ I ++
Sbjct: 214 RMLLKDVTSMDIGSVIELNQLANEPLEILIDDKVIAKGEVVIVDGNFGIQVTE-IGTKRQ 272
Query: 310 SLKNFLH 316
L+
Sbjct: 273 RLEQLRS 279
>gi|291278836|ref|YP_003495671.1| flagellar motor switch protein FliN/FliY [Deferribacter
desulfuricans SSM1]
gi|290753538|dbj|BAI79915.1| flagellar motor switch protein FliN/FliY [Deferribacter
desulfuricans SSM1]
Length = 292
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)
Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
L K+ + ++ DV+I T +G S + +F + F
Sbjct: 15 EFVDLVKENFGSSLQTVINRDVEIEITEFFTGFISDVYENFDNPVCVKGVETE-SGNEFG 73
Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
+ + + L++ ++ E+ +L + K AK I QI + LN + +
Sbjct: 74 LLFTIKDLTALVDYMMMGEGESKDELDDE-----TKDGAKELITQIVSSLNVPLKEKYDK 128
Query: 157 SPNLEDFYDIDYLKKNTNRLSNEF-VTTINMNMTIENVASSF---------VLIIPQETL 206
N +E ++ + + S F +I
Sbjct: 129 KFNFTVVDI-----FTEMSEEDEKEYAAYKFSIKADKIDSEFIFFIDSAFNSIIETSSEK 183
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ + E S + + + +I K LKD++ L G++I
Sbjct: 184 TDDVPDFVPFEEGFEQNSSYDSGGNIDLLLDVEIPVSVKIGSTKMYLKDILELGPGKIIE 243
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
L N K I E+ V + +RI + ++ ++ K
Sbjct: 244 LEEYADEPVELLVNNKVIARGEVVVVDGYFGLRIQEIVSKAERIKK 289
>gi|326386953|ref|ZP_08208566.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM
19370]
gi|326208562|gb|EGD59366.1| flagellar switch protein [Novosphingobium nitrogenifigens DSM
19370]
Length = 295
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/284 (13%), Positives = 87/284 (30%), Gaps = 12/284 (4%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKE 79
L +K + + + + L +++ + + +
Sbjct: 20 LLRPGPEKADVLQALARAADRMARTLRGAMARLCGGYPPEVAIAAPREIGIEEFQS--EG 77
Query: 80 NFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTI 139
+S S+ V+ L++ G E + R L + + +R
Sbjct: 78 LTAYSIYSVLPGLDRLASAIDGEAVLRLVDRTFGGPGEAP-RPMPRELPMSAELMVQRIE 136
Query: 140 AQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFV 198
+S L + + + P L + S + + + ++ +
Sbjct: 137 TILSEELGRALGGSHAIRP----LRRDRDLAQLQPFASATRLALLEITISEGSREPWPIR 192
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
L++P E L T + + ++ DP A + + + + + L+ V T
Sbjct: 193 LVLPVEALSSLTGMGAQPATSTT-RAPAKGDPLAEPYGAMPLPVTALLVDTRVPLRTVST 251
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L +GQV+ L G+ + +G V I IT
Sbjct: 252 LAVGQVLML--PIARSVPLVVGGQTVGHGAIGAVDDRVAIEITH 293
>gi|223041128|ref|ZP_03611383.1| flagellar motor switch protein [Campylobacter rectus RM3267]
gi|222877622|gb|EEF12748.1| flagellar motor switch protein [Campylobacter rectus RM3267]
Length = 277
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 90/241 (37%), Gaps = 8/241 (3%)
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
V + ++ + + L+ + E +LG N +LS E AK
Sbjct: 42 PPLVVANVTVGGDVTAKMMLVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+ I + + + + +++L ++ N + F ++ I +V+
Sbjct: 98 VFSNILGAFSTSLGAQKGMPKLNFEVAKVNFLDESANLDVSAFEKIYIYSVKIGDVSEHI 157
Query: 198 VLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLK 254
+++ + S+Q + +S+ + + + + + RI K+ LK
Sbjct: 158 AVVLDFALVKFLNKDQKESAQQAATAKSDLIAEEMRNIGLIMDVRLPLHVRIGSKRMLLK 217
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
DV+T+ IG VI + + K + E+ V N+ I+IT I ++ L+
Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQITQ-IGTKKERLEQL 276
Query: 315 L 315
Sbjct: 277 R 277
>gi|323705434|ref|ZP_08117009.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535336|gb|EGB25112.1| CheC [Thermoanaerobacterium xylanolyticum LX-11]
Length = 372
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/339 (11%), Positives = 92/339 (27%), Gaps = 59/339 (17%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
+ + +G + + V I+ + + F +V +
Sbjct: 32 EEQDVLGEIGNISFGTSATTLFTLLRNKVTITTPKVSIVNWESLKKEFNIPYVAVEVEYT 91
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
N + V+ + + ++G T ++ LS + + + I S L+
Sbjct: 92 EGIKGNNLLILKEQDVLRITDLMMGGDGNVTEGEITELHLSAIGEA-MNQMIGSASTSLS 150
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETL 206
I + SP D + + + M + ++ S + +IP
Sbjct: 151 TLIGESINISPPKAFIVDFNKGLPGDISFPEGDIVKVAFKMVVGDIIDSEIMQLIPISFA 210
Query: 207 LKTTLISLSSQ-------------------NKSENQSEDLIDPFARK------------- 234
K +S + D + +
Sbjct: 211 KKLVEQVMSKNVENSPKGSFQDVNDDDIINTGTAGIKNDFNEEIRHEEQISQPKSRKVDV 270
Query: 235 -----------------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + + + + +KD++ L G +I
Sbjct: 271 KPVVFKELDADEQTVSEKENINLIMDIPLTVTVELGRTRKLIKDILELNEGSIIELDKLA 330
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RI D + ++
Sbjct: 331 GEPVDILVNGKFIAKGEVVVIDENFGVRILDIVKQSKRI 369
>gi|237753389|ref|ZP_04583869.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
BAA-430]
gi|229375656|gb|EEO25747.1| flagellar motor switch protein FliY [Helicobacter winghamensis ATCC
BAA-430]
Length = 279
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 21/278 (7%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + ++S+ Q GK S S SS F S +
Sbjct: 14 TATIEGLLGQTPEVSHIEAQDGK----SDSINPPMAKIDISTDDGSSLAFF-ISPKVATA 68
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG E+ + L K + I ++ + +E +I
Sbjct: 69 LADMMLGGEGESKETMEADDLDAT-----KEIASNIFGAISTSLGGQKELPKLSFSISNI 123
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
+++ L N + I +V + + +S + +
Sbjct: 124 NFIPDGDLGLGNYSGF-YTFSFNIGSVQDYLYFGFSSAFENHFNPNANQALEESSTGNGE 182
Query: 227 LIDPFA---------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + + RI KK LKDV+ + IG V+ +
Sbjct: 183 AQAKVELNNAEMKNMAMLLDVRLQVKVRIGQKKMLLKDVIAMDIGSVVELNQLANDPLEV 242
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ K I E+ V N+ I+IT+ I + L +
Sbjct: 243 LVDDKVIAKGEVVIVDGNFGIQITE-IAPKKDRLDQLM 279
>gi|57168741|ref|ZP_00367872.1| fliY protein (fliY) [Campylobacter coli RM2228]
gi|305432517|ref|ZP_07401679.1| flagellar motor switch protein [Campylobacter coli JV20]
gi|57019788|gb|EAL56471.1| fliY protein (fliY) [Campylobacter coli RM2228]
gi|304444556|gb|EFM37207.1| flagellar motor switch protein [Campylobacter coli JV20]
Length = 278
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/279 (15%), Positives = 92/279 (32%), Gaps = 22/279 (7%)
Query: 50 FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
F + ++ ++ S + ++ + K V++ ++ I L+
Sbjct: 9 FTNECTSTIEGLTGKSAEFSEYKEFDVSSQDTLKPPLVYAVFNIKE-GGKIGILAGAVLM 67
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
+ E ++G + K+ + I+ S L + +
Sbjct: 68 SAIGEWMMGEEEISKNDQLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFEISSCE 126
Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
+ N +F ++ IE++ LI+ Q TL + + + S
Sbjct: 127 FV-----AENVDFKDFTKLYFFDVKIEDLEEQISLIVDQ-TLHNILSGKAADDGHAHSSS 180
Query: 225 EDLIDPFA--------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
F + + + RI KK LKDV+T+ IG V+
Sbjct: 181 NSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLE 240
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ K I E+ V N+ ++IT+ I ++ L+
Sbjct: 241 ILIGDKRIAYGEVVIVDGNFGVQITE-IGSKKERLEQLR 278
>gi|315453794|ref|YP_004074064.1| putative flagellar motor switch protein [Helicobacter felis ATCC
49179]
gi|315132846|emb|CBY83474.1| putative flagellar motor switch protein [Helicobacter felis ATCC
49179]
Length = 292
Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 48/301 (15%), Positives = 86/301 (28%), Gaps = 32/301 (10%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ L+ + + I + I F E+ +
Sbjct: 1 MIEDFLKLFVQECTSTLGGLLGKTPAIELKN--EISVGDFI--FIEHASVVVQVKPQTNV 56
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
+ + L + ++G + L L + K + I L +
Sbjct: 57 TITLAVPVPMATALADLMVGGEGTSKQTLEKDDLDAI-----KEIGSNIFGALTTALQAQ 111
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL-------------I 200
+ + + + + +E V SSF + +
Sbjct: 112 EVIPKLSFEVSEAVDAQDASLLDPYSDGYE--FGFELEQVKSSFFIFCGGVFIDLFKKKV 169
Query: 201 IPQETLLK----TTLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTL 253
PQ T + + L AR + +N+ RI KK L
Sbjct: 170 APQNTSKPRNAPSMPNLPVVPTERTESDGHLEQLEARNINMLLDIKLNVRVRIGQKKMIL 229
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
KDVV++ IG VI + + K I E+ V N+ I+ITD I + L+
Sbjct: 230 KDVVSMDIGSVIELNQMVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGSKRDRLEQ 288
Query: 314 F 314
Sbjct: 289 L 289
>gi|157850891|gb|ABV90252.1| flagellar motor switch protein [Bacillus subtilis subsp. sadata]
Length = 110
Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 206 LLKTTLISL---SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
L Q+ + ++ + + + + T+++ ++L++G
Sbjct: 1 LEPLIPKLSVHYWMQSDRNEPKPEETKSLEKRIMTAQIPVVAELGTSELTIEEFLSLEVG 60
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQK 309
I + K + + GRV + ++I D I +Q
Sbjct: 61 DCITLDKSVTDPLTVLVGDKPKFLGQAGRVNRKQAVQILDHDIRGEQD 108
>gi|115377834|ref|ZP_01465022.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|310820305|ref|YP_003952663.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
aurantiaca DW4/3-1]
gi|115365166|gb|EAU64213.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|309393377|gb|ADO70836.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
aurantiaca DW4/3-1]
Length = 441
Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/274 (13%), Positives = 84/274 (30%), Gaps = 17/274 (6%)
Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNN 102
+ L K D + ++ S Q F + + + + + +
Sbjct: 61 AEPLYARLKALFDAESRVNLVSVQIRPFQELQRYLGDPSFLAVLAPGALKERVVLEVELP 120
Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
L L++ LLG ET + R L+ +E+ + + + L + +
Sbjct: 121 LAHNLVDMLLGGVGET---VGLRPLTDIEEGVMSFVVLEALKALAPALDPSLPKLRLETV 177
Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL-LKTTLISLSSQNKSE 221
+ + + V I++N ++ L+IP + + + +
Sbjct: 178 ARGAE--EVADRLGEEDRVVVIHLNASLGPHTGLVRLVIPTGVVGAAELAQAAAERRSQV 235
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-------LHREKTC 274
N L + + I + +D+ +++ V+ E+
Sbjct: 236 NTDLQLNRWM---LSTVRTWLRAEIGQAEIASQDLAYIRVKDVVLLDALTARPDRGEEGT 292
Query: 275 AILSAN-GKEIYSCELGRVGKNYTIRITDRINFD 307
A+L G E+ Y R+T + +
Sbjct: 293 AVLRVGMGSSRVEAEVFLEDGQYKARVTSIVIGE 326
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 35/86 (40%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
SS+++ ++ + + + I + T +VV+L++G V+
Sbjct: 351 SSESEGQSLDTMNKSEGSDLLADIPLQIAVELARVPVTADEVVSLRVGHVLELHRSPGEP 410
Query: 275 AILSANGKEIYSCELGRVGKNYTIRI 300
LS NGK + EL V +R+
Sbjct: 411 VELSVNGKVVARGELVEVEGQLGVRV 436
>gi|32266647|ref|NP_860679.1| flagellar motor switch protein FliY [Helicobacter hepaticus ATCC
51449]
gi|32262698|gb|AAP77745.1| flagellar protein FliY [Helicobacter hepaticus ATCC 51449]
Length = 278
Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 20/274 (7%)
Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLL 108
+ M +S+T S + + + S + + + + L
Sbjct: 16 IEGLMGKTPSVSHTQDDSVS----LENLPTPYAISYIQASGDGNGEIAMVIPVEMGTALA 71
Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
+ +LG E ++ + L +++ ++ +S LN + + + + I
Sbjct: 72 DMMLGGEGEVKSEMSDDDLDAIKE-ISSNIFGAVSTSLNSQ-NELPKLNFTCSNIEFIT- 128
Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
N + F N T++++ S+F ++ + + + S+Q +
Sbjct: 129 ----ENMDLSRFDKAYIFNFTLDSIQSNFTILANKSFVELFEGGNTSAQAAPAESAAQTN 184
Query: 229 DPFA-------RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ + +N+ RI K+ LKDV+ + IG VI + +
Sbjct: 185 PALSATEYKNINMILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQLANDPLEILVDD 244
Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
K I E+ V N+ I+ITD I + L+
Sbjct: 245 KVIAKGEVVIVDGNFGIQITD-IGTKRDRLEQLR 277
>gi|78776907|ref|YP_393222.1| flagellar motor switch protein FliY [Sulfurimonas denitrificans DSM
1251]
gi|78497447|gb|ABB43987.1| Flagellar motor switch FliN [Sulfurimonas denitrificans DSM 1251]
Length = 283
Score = 96.2 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 86/249 (34%), Gaps = 15/249 (6%)
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + + +S+ + + LV +L + ++G + L K
Sbjct: 41 VPPIVLLNVSVSGDTNSSAMLALTPRLVASLSDMMMGEDQSNREDVSEDDLDAA-----K 95
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS 196
+ I ++ + +E + +I+Y+ +N + + + I S
Sbjct: 96 EIASNIFGAISNSLGAQKELPKLSFNIDNIEYIDENKDVSLENYSKMFVYHFVIGETNSL 155
Query: 197 FVLIIPQ--ETLLKTTLISLSSQNKSENQSEDLIDPFARK-------TYQLNVNIDTRIN 247
+LI+ + +L +L K+E+ + + + + RI
Sbjct: 156 LMLIMDENLSNILFQKDKTLGDDRKNESNKNSATVSLSSDEMSNIALIMDVKLPVKVRIG 215
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
KK LKDV+ + IG VI + + I E+ V N+ ++IT I
Sbjct: 216 KKKMLLKDVLNMDIGSVIELNQLANDPLDILVDDNVIAEGEVVIVDGNFGVQITS-IGTK 274
Query: 308 QKSLKNFLH 316
++ L
Sbjct: 275 RERLNQLKS 283
>gi|57241941|ref|ZP_00369881.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
gi|57017133|gb|EAL53914.1| fliY protein (fliY) [Campylobacter upsaliensis RM3195]
Length = 279
Score = 96.2 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 21/279 (7%)
Query: 50 FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
F + ++ ++ S + ++ + K V+ +S I L+
Sbjct: 9 FTNECVSTIEGLTGKSAEFSEYKEFDVSASDTLKPPLVYVNFGVS-SGGRIGILAGAVLM 67
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
+ E ++G T K+ + I+ + L + +L
Sbjct: 68 SAIGEWMMGEEKITKNDKLGADEMDAAKEAIQNIISAFTTSLG-AQKELPKMEFSLSSCE 126
Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSE 221
I+ + +FV N ++ I+ + L + +TL K+ + +
Sbjct: 127 FIE-----ESIDLKDFVKLYNYDIKIDGLEEQISLAMDDKLYKTLTKSGDAKAQQKEGAI 181
Query: 222 NQSEDLI---DPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ E ++ + + + + RI KK LKDV+T+ IG V+
Sbjct: 182 SSGEAMMMLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLE 241
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ K I E+ V N+ ++IT+ I ++ L+
Sbjct: 242 ILIGDKRIAYGEVVIVDGNFGVQITE-IGTKKERLEQLR 279
>gi|254477766|ref|ZP_05091152.1| Surface presentation of antigens protein [Ruegeria sp. R11]
gi|214032009|gb|EEB72844.1| Surface presentation of antigens protein [Ruegeria sp. R11]
Length = 448
Score = 96.2 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 17/291 (5%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
++AR + K SS ++ + + + DL V + + +
Sbjct: 16 VIARKLAATKEGKG-ALTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRVPEDLAAH 74
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + LV L++ R + + +
Sbjct: 75 LSDKHLLVVLD-GPAGRIGAATLDAPLVTALIQQQTMGQVLGKA-PSERHYTPTDAAMVA 132
Query: 137 RTIAQISAVLNQCISTTQE--SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI--EN 192
+ + + +S ++ ++ ++ L E I++ + +
Sbjct: 133 DFLERTFGKVVSMLSGQKDEVIFSGYRFGAQVENVRSLVLGLEAEDYRLIDLTVDLACGA 192
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
+ + LI+P+ T N S+ + + + +
Sbjct: 193 MQGNMTLILPEPTAEDL---------GKANGSQHAGPSLGSNLGAMRAELQAVLCKMRVP 243
Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+L G ++P +++ +G+ I LG++ +R+TD
Sbjct: 244 ANAFTSLAKGDLLPLDQAYLYETEMVAISGQVIAQGRLGQMNGARAVRLTD 294
>gi|224437151|ref|ZP_03658132.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
gi|313143614|ref|ZP_07805807.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
gi|313128645|gb|EFR46262.1| flagellar motor switch protein FliY [Helicobacter cinaedi CCUG
18818]
Length = 278
Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 20/286 (6%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
L + + M +++TS + ++ S + + QAS S +
Sbjct: 4 FIDLIVQEATATIEGLMGKTPSVTHTSDSNVSLENL--SIPYSISYIQASGDG-SGELAM 60
Query: 98 GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESS 157
+ L + +LG E+ P++ L +++ ++ IS LN + +
Sbjct: 61 IIPVAMATALADMMLGGEGESKPEMSEDDLDAIKE-ISANIFGAISTSLNSQ-KELPKLN 118
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI--------IPQETLLKT 209
+ + + + + F N +++++ S+F ++
Sbjct: 119 FSCSNIEFVT-----QSIELSRFDKAYIFNFSLDSIQSNFTILANASFVGLFEGGAATPV 173
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
S + S + +N+ RI K+ LKDV+ + IG VI
Sbjct: 174 AHAESGSTPVAHALSPTEFKNINM-ILDVRLNVKVRIGQKRMLLKDVIAMDIGSVIELNQ 232
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ + K I E+ V N+ I+ITD I + L+
Sbjct: 233 LANDPLDILVDDKVIAKGEVVIVDGNFGIQITD-IGTKRDRLEQLR 277
>gi|187934894|ref|YP_001885006.1| flagellar motor switch protein [Clostridium botulinum B str. Eklund
17B]
gi|187723047|gb|ACD24268.1| flagellar motor switch protein FliN [Clostridium botulinum B str.
Eklund 17B]
Length = 385
Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/346 (8%), Positives = 99/346 (28%), Gaps = 64/346 (18%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
+ + +G + + ++ +V+I+ + SF+ +
Sbjct: 42 KDLLGEIGNISMGSASTALYQIINQNVNITTPVVSLTTLKDMKASFETPNIILDVEYTEG 101
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQC 149
+ + + ++G + + + ++ + I + +
Sbjct: 102 IIGRNILVMRTDDAAVIANLMMGGDGKVPENPELSEIEVSAVQEAMNQMIGSAATSMATM 161
Query: 150 ISTTQE---------------SSPNLEDFYDIDYLKK------------NTNRLSNEFVT 182
S + + L + +I + N
Sbjct: 162 FSRRVDISPPTSKLWKEKDEPITETLSEDEEIVRVSFRLIIGDLVDSNIMQILPLNTAKK 221
Query: 183 TINMNMTIENVASSFV---------------------------------LIIPQETLLKT 209
+++ M E+ ++ + ++ +
Sbjct: 222 IVSIMMGEEDASTEAIESAKVVEEKPRVQATNQKVNVHEQVQTTIKAKPIVEAPKVQEPI 281
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + + + + + ++I + K ++KD++ L G +I
Sbjct: 282 EVHEAAFETLVPGDTSQVPKNI-DLILDVPLDISVVLGRTKKSIKDILNLSTGSLIELDK 340
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ + NGK+I E+ V +N+ +RIT ++ + + +K+
Sbjct: 341 LAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVS-NAERIKSLR 385
>gi|167464155|ref|ZP_02329244.1| flagellar motor switch protein [Paenibacillus larvae subsp. larvae
BRL-230010]
gi|322382381|ref|ZP_08056288.1| flagellar motor switching and energizing phosphatase-like protein
[Paenibacillus larvae subsp. larvae B-3650]
gi|321153734|gb|EFX46109.1| flagellar motor switching and energizing phosphatase-like protein
[Paenibacillus larvae subsp. larvae B-3650]
Length = 415
Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/298 (10%), Positives = 78/298 (26%), Gaps = 48/298 (16%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
S++ + + + V+IS + S + + VF + S
Sbjct: 144 LSAVQEAMNQMMGSSATSMSIIFNRLVNISPPGIDIMRLSEGEGNLPDEDVFIKISFRLT 203
Query: 92 SS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ ++ N+LG + E++
Sbjct: 204 IGDLIDSTIMQLLPVDFSKEMVSNMLG------------EGTQTEEET------------ 239
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
++ E + + + + + + S L P
Sbjct: 240 AAALTMEPELTSSASIPEEKEVQPPMPASQHDYT--QAPPARQQPHEGGSAYLASPAYKE 297
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFA------------RKTYQLNVNIDTRINLKKTTLK 254
S ++ N + + + + +K
Sbjct: 298 EP--AASSGMMQRNVNVQPVQFSNLQAGGYAQADETNLNLLLDIPLKVTVELGRTNKMIK 355
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
D++ L+ G ++ + N K I E+ + +N+ +R+TD ++ + K
Sbjct: 356 DILELQQGSIVELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQFDRIQK 413
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/230 (10%), Positives = 71/230 (30%), Gaps = 15/230 (6%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ S P + L+G D +G + + V+I+
Sbjct: 29 EGGSSYSPAVEDFLSGLEQDA------LGEIGNITFGSAATALSTLLGKKVEITTPKVSV 82
Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+++ F + + + + + + + ++G +
Sbjct: 83 IAREDLVNEFSKPHVAVHVKYVDGFHGINLLVIKRSDAQVIADLMMGGDGHPETDELSEI 142
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV-TTIN 185
+ ++ + + + ++ + SP D + + N L +E V I+
Sbjct: 143 HLSAVQEAMNQMMGSSATSMSIIFNRLVNISPPGIDIMRLSEGEGN---LPDEDVFIKIS 199
Query: 186 MNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
+TI + + S+ + ++P + + + + + E+ +
Sbjct: 200 FRLTIGDLIDSTIMQLLPVDF---SKEMVSNMLGEGTQTEEETAAALTME 246
>gi|114766080|ref|ZP_01445089.1| possible flagellar switch protein FliM [Pelagibaca bermudensis
HTCC2601]
gi|114541635|gb|EAU44676.1| possible flagellar switch protein FliM [Roseovarius sp. HTCC2601]
Length = 396
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/298 (10%), Positives = 82/298 (27%), Gaps = 24/298 (8%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT--SCQSGKF 70
P + + + S+ K L + D+ D++ +
Sbjct: 2 GDPARQDEVLAQKASAARRALEARSMSP--SKALRRALSRTADVLWDLALVTHGVEQAHL 59
Query: 71 SH--IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
++ + + + ++ L+E +P + R L+
Sbjct: 60 DQDGVVAALGGDALLILLD-GPDGVPGVARIERPVMTGLIEVQTILQVTQMP-VEERPLT 117
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR-----LSNEFVTT 183
+ + + + + P + F ++ + S
Sbjct: 118 QTDAAMMAPLLDSALERFERYLED-HPLQPQIAGFRFGAMVEDSRTAGLLLDASGYRAFR 176
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+++++ + L +P + + + +K L V++D
Sbjct: 177 VSLDLALGRRTGELALFLP----DRAEAAAADEAGDLGQEGPH-----EQKMKLLPVHMD 227
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN-GKEIYSCELGRVGKNYTIRI 300
++ L L+ G +IP L A G + LG++ +R+
Sbjct: 228 AVLHRLVLPLSAAEKLQPGDLIPLPPEALDGVELLAGDGSGVAGGRLGQINGMRAVRL 285
>gi|114566397|ref|YP_753551.1| MCP methylation inhibitor CheC [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337332|gb|ABI68180.1| CheC, inhibitor of MCP methylation [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 398
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/354 (11%), Positives = 92/354 (25%), Gaps = 74/354 (20%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSS 90
+ +G + + V I+ + + F+ +
Sbjct: 44 KDTLGEVGNISMGTAATTLSTLLRKKVSITTPDVSVTNPEELQLLYPLPFLVVEVSYTQG 103
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIP--QLYNRSLSTVEKKLAKRT---------- 138
+ + + + ++G + L + LS V + + +
Sbjct: 104 VTGTNVLVIKEEDAAIIADLMMGGDGLSAEGKNLGDLELSAVGEAMNQMMGSATTSLSSM 163
Query: 139 ----------------IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN--EF 180
+ + L+ + +E ++ + E
Sbjct: 164 FNQRIDIAPPQLTVIDMGKEFLQLSTSFDDVVKIKFKME-IENLINSEIMQIIPMEAVEN 222
Query: 181 VTTINMNMTIENVASSFVLIIP----------------------------------QETL 206
+ +I + T E ++ V+ P Q +
Sbjct: 223 IMSILLGSTAEESSAEAVMEEPLVGMPLPETKAAAVAAPRQAETAISPPPQEPIYGQAFV 282
Query: 207 LKTTLISLSSQ--------NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+S Q + + + +++ + K T+ +++
Sbjct: 283 QSPREMSNRPQFAVQPVQFAPLQESNMLHSPQNLDLIMDVPLDVSVELGKTKKTIGEILE 342
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
L G +I L NGK I E+ + +NY IRIT I+ + K
Sbjct: 343 LNQGAIIQLDKLAGEPVDLLVNGKLIAKGEVVVIDENYGIRITTIISPIDRMNK 396
>gi|153951920|ref|YP_001397324.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939366|gb|ABS44107.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 273
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ +++ I L+ + E ++G T
Sbjct: 17 SAEFSEYKEFDVNASDTLKAPLVYAIFDIAN-GGKIGILAGTVLMSAIGEWMMGEEEITK 75
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 76 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 129
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 130 FKKLFLYDVKIGDLEEQISLAMDQTLHNILSGKPAETGNASADSNHNAEEKAIMLSEELK 189
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 190 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 249
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 250 IVDGNFGVQITE-IGSKKERLEQLR 273
>gi|315123664|ref|YP_004065668.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315017386|gb|ADT65479.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 280
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ +++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|88597660|ref|ZP_01100893.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|88189964|gb|EAQ93940.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
84-25]
Length = 280
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|283955503|ref|ZP_06372998.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792964|gb|EFC31738.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 280
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ +++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|163736146|ref|ZP_02143565.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
gi|161390016|gb|EDQ14366.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
Length = 460
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/291 (9%), Positives = 85/291 (29%), Gaps = 16/291 (5%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
+LAR + K SS ++ + + + DL V + + +
Sbjct: 16 VLARKLAATKEGKG-GLTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRIPEDLPPH 74
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + + V L++ R+ + + +
Sbjct: 75 LSDKHLLVVLDGPNGR-IGAATLDAPTVTALIQQQTMGQVLGKA-PSERNYTPTDAAMVA 132
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIEN 192
+ + A + ++ ++ + + + + V + +++
Sbjct: 133 DFLERTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGA 192
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
+ LI+P+ + ++ + + + + K
Sbjct: 193 MQGGLTLILPEPSPEDL--------GEAGQNAHQAGPSLGSNMGSMRAELRAVLCRMKVP 244
Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ L+ G ++P ++S +G+ I LG++ +R+TD
Sbjct: 245 ANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTD 295
>gi|163741324|ref|ZP_02148716.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10]
gi|161385677|gb|EDQ10054.1| hypothetical protein RG210_17730 [Phaeobacter gallaeciensis 2.10]
Length = 460
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/291 (9%), Positives = 85/291 (29%), Gaps = 16/291 (5%)
Query: 17 LLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
+LAR + K SS ++ + + + DL V + + +
Sbjct: 16 VLARKLAATKEGKG-GLTSSLTLKALRRSIARAAADLCDLPVAVLAARQANRIPEDLPPH 74
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + + V L++ R+ + + +
Sbjct: 75 LSDKHLLVVLDGPNGR-IGAATLDAPTVTALIQQQTMGQVLGKA-PSERNYTPTDAAMVA 132
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIEN 192
+ + A + ++ ++ + + + + V + +++
Sbjct: 133 DFLERTFAKVVSMLAQQKDEAIFSGYRFGAQVEDVRSLVLGLEAEDYRVIELTLDLACGA 192
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
+ LI+P+ + ++ + + + + K
Sbjct: 193 MQGGLTLILPEPSPEDL--------GEAGQNAHQAGPSLGSNMGSMRAELRAVLCRMKVP 244
Query: 253 LKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ L+ G ++P ++S +G+ I LG++ +R+TD
Sbjct: 245 ANEFSALEEGDLLPLDQAFLYETEMISISGQAIAQGRLGQMNGARAVRLTD 295
>gi|154175006|ref|YP_001408768.1| flagellar motor switch protein FliY [Campylobacter curvus 525.92]
gi|112802638|gb|EAT99982.1| iron chelatin ABC transporter, substrate binding protein
[Campylobacter curvus 525.92]
Length = 286
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/289 (16%), Positives = 104/289 (35%), Gaps = 28/289 (9%)
Query: 46 LPKIFKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFS-QASLSSWSSNFFIGC 99
+F ++ V+ ++ + + G+ + + K V + ++ I C
Sbjct: 5 FFNLFTNELKATVEGLTGRTPEVGERNDFDAPTQNGIKPPVVMASVMLSGDVNAKAEIVC 64
Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
+ LV + E ++G N +L E AK + + + + + + P
Sbjct: 65 TPVLVSAISEWMMG----EEEISRNEALGADELDAAKEIFSNLLSAFSTSLGAQKGM-PK 119
Query: 160 LEDFYDIDYLKKNTNRLSNEFVT---TINMNMTIENVASSFVLIIPQETL---LKTTLIS 213
+ ++I + + +F ++ IE++ + + T +
Sbjct: 120 IS--FEIVNVNFLDENSALDFSVYEKLFLFSVKIEDINEHIGFVCDHTLMKFFEPTKVGE 177
Query: 214 LSSQNKSE------NQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
SQ+ + ++SE + + + I RI K+ LKDV+++ IG VI
Sbjct: 178 SESQSGDQAKATHGSRSEFSAEEMRNINLIMDVRLPIRVRIGSKRMLLKDVLSMDIGSVI 237
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ K I E+ + N+ I+IT I ++ L+
Sbjct: 238 ELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQ-IGSKRERLQQL 285
>gi|148926865|ref|ZP_01810543.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|167004760|ref|ZP_02270518.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 81-176]
gi|205356442|ref|ZP_03223206.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8421]
gi|145844442|gb|EDK21550.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8486]
gi|205345629|gb|EDZ32268.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni CG8421]
gi|315057500|gb|ADT71829.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni S3]
Length = 280
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|57237069|ref|YP_178081.1| flagellar motor switch protein FliY [Campylobacter jejuni RM1221]
gi|121612924|ref|YP_999785.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 81-176]
gi|57165873|gb|AAW34652.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
gi|121504209|gb|EAQ71980.2| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 273
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I L+ + E ++G T
Sbjct: 17 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 75
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 76 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 129
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 130 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 189
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 190 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 249
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 250 IVDGNFGVQITE-IGSKKERLEQLR 273
>gi|86151260|ref|ZP_01069475.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85841607|gb|EAQ58854.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
260.94]
Length = 280
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 23/266 (8%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ +++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFDIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP----FARK- 234
F ++ I ++ L + Q TL + + S + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQ-TLHNILSGKPAETGNTSTDSNHNAEEKAIILSEEL 195
Query: 235 -----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 196 KNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEV 255
Query: 290 GRVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 256 VIVDGNFGVQITE-IGSKKERLEQLR 280
>gi|322378966|ref|ZP_08053380.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
gi|322379820|ref|ZP_08054117.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
gi|321147788|gb|EFX42391.1| flagellar motor switch protein FliY [Helicobacter suis HS5]
gi|321148642|gb|EFX43128.1| flagellar motor switch protein FliY [Helicobacter suis HS1]
Length = 293
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 89/303 (29%), Gaps = 31/303 (10%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
+ L+ + + +++ S I F N + ++ +
Sbjct: 1 MIDDFLKLFTQEFISTIGGLLGKVPEVALKS--EISVGDFI--FVNNASINV-HIADTNL 55
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
+ + L + ++G ++ L L + K + + L + +
Sbjct: 56 TITLAIPIPMATALADLMVGGEGKSKETLEPDDLDAI-----KEIGSNVFGALTTALKSQ 110
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF----VLIIPQETLLKT 209
+ + + + + ++ + + I +
Sbjct: 111 EVLPKLSFEIEGAVFAHDASLLDPYSDGFEFSFSLDQIQSSFFIFCGGLFIETFKKKEVI 170
Query: 210 TLISLSSQNKS--------------ENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTL 253
IS Q + + + +N+ RI KK L
Sbjct: 171 KNISKPIQGPAMPNIPVVQHNNDHVDGDHPLEQTEIRNINMLLDIKLNVRVRIGQKKMIL 230
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
KDVV++ IG V+ + + K I E+ V N+ I+IT+ I ++ L+
Sbjct: 231 KDVVSMDIGSVVELNQMVNDPLEILVDDKVIAKGEVVIVDGNFGIQITE-IGTKKERLEQ 289
Query: 314 FLH 316
+
Sbjct: 290 LKN 292
>gi|255322028|ref|ZP_05363178.1| flagellar motor switch protein [Campylobacter showae RM3277]
gi|255301132|gb|EET80399.1| flagellar motor switch protein [Campylobacter showae RM3277]
Length = 277
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 8/241 (3%)
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
V + A ++ + + L+ + E +LG N +LS E AK
Sbjct: 42 PPLAVANIAVSGDTTAKMILVATPVLMSAIGEWMLG----EEEISRNENLSEDELDAAKE 97
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+ I + + + + +++L ++ N N F ++ I +V+
Sbjct: 98 VFSNIMGAFSTSLGAQKGMPKLNFEVAKVNFLDESANFDLNAFEKIYVYSVKIGDVSEQI 157
Query: 198 VLIIPQETLLKT-TLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLK 254
+++ + +Q + + + I+ + + + RI K+ LK
Sbjct: 158 AVVLDFALVKFLNKDHKEPAQQATPAKGDLSIEEMRNIGLIMDVCLPLHVRIGSKRMLLK 217
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
DV+T+ IG VI + + K + E+ V N+ I+IT I ++ L+
Sbjct: 218 DVLTMDIGSVIELNQLANDPLEILISDKVVALGEVVIVDGNFGIQITQ-IGTKKERLEQL 276
Query: 315 L 315
Sbjct: 277 R 277
>gi|315638333|ref|ZP_07893513.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
gi|315481600|gb|EFU72224.1| flagellar motor switch protein [Campylobacter upsaliensis JV21]
Length = 281
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 23/281 (8%)
Query: 50 FKEKMDLDVD-ISYTSCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
F + ++ ++ S + ++ + K V+ +S I L+
Sbjct: 9 FTNECVSTIEGLTGKSAEFSEYKEFDVGASDTLKPPLVYVNFGVS-SGGRVGILAGAVLM 67
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
+ E ++G T K+ + I+ + L + +L
Sbjct: 68 SAIGEWMMGEEEITKNDKLGADEMDAAKEAIQNIISAFTTSLG-AQKELPKMEFSLSSCE 126
Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---QETLLKTTLISLSSQNKSE 221
I+ + +FV N ++ IE++ L++ +TL K+ ++Q K
Sbjct: 127 FIE-----ESIDLKDFVKLYNYDIKIEDLEEQISLVMDDKFYKTLTKSGDDEATTQQKEG 181
Query: 222 NQSEDLI-----DPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
S + + + + RI KK LKDV+T+ IG V+
Sbjct: 182 AVSSGEAMMTLGEGLKNINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDP 241
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ K I E+ V N+ ++IT+ I ++ L+
Sbjct: 242 LEILIGDKRIAYGEVVIVDGNFGVQITE-IGTKKERLEQLR 281
>gi|157414373|ref|YP_001481629.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 81116]
gi|157385337|gb|ABV51652.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 81116]
gi|315931623|gb|EFV10588.1| Flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 327]
Length = 280
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNAEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|118474978|ref|YP_892647.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
fetus 82-40]
gi|261886378|ref|ZP_06010417.1| flagellar motor switch protein FliY [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118414204|gb|ABK82624.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
82-40]
Length = 276
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 7/236 (2%)
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
V + + + L+ + + +LG N ++ E +K +
Sbjct: 45 VVANINVSGDINGKIIFIATPLLITAINDLMLG----EEEPTKNLNIGDDELDASKEIFS 100
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
I + ++ ++ ++ + + YL +N + + +T+ ++ L+
Sbjct: 101 NILSAISTSLTAAKDMPKLSFEIQKVVYLDENQILDLSSYEKLFLCPVTMGDINEHIGLV 160
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVT 258
I + + D+ + + + I RI KK LKDV++
Sbjct: 161 IDFAFNKYFNKSDEKHTKEIPHLKADITEEIKNIGLIMDVRLPIRVRIGSKKMLLKDVLS 220
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ IG VI + K++ E+ V N+ ++IT+ I ++ L+
Sbjct: 221 MDIGSVIELNQLANDPLEVLIGDKQVALGEVVIVDGNFGVQITE-IGTKKERLEQL 275
>gi|86149628|ref|ZP_01067858.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|218561744|ref|YP_002343523.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|85839896|gb|EAQ57155.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|112359450|emb|CAL34233.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|284925355|gb|ADC27707.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315927742|gb|EFV07069.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315929163|gb|EFV08388.1| flagellar motor switch protein FliY [Campylobacter jejuni subsp.
jejuni 305]
Length = 280
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNTSDTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|221200569|ref|ZP_03573611.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2M]
gi|221209244|ref|ZP_03582234.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2]
gi|221170900|gb|EEE03357.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2]
gi|221179910|gb|EEE12315.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia multivorans CGD2M]
Length = 385
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 17/291 (5%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
L P+ G D I ++L L + V++ + H
Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158
Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
F W + + + + AS P + +
Sbjct: 159 AS---PAALRFELRRADGAWRCHGALLFDAPDALAV----FFASAPAAPPDAAALYANLP 211
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
L + + +E ++ + R+ I +
Sbjct: 212 VPLVFEIGRTELT-MAELADVVGGDIIAIERWHAHEQNLLCVARVPAAPAWEITGRPSGS 270
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ + +P L T + + + + S L V++ +
Sbjct: 271 RLTVERIREMP---LEPTRTDTPPATGTAHDASPADAPR---ALDGLAVDLRFELPPTSM 324
Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ L+ G VI L ANG I + L VG+ +R+
Sbjct: 325 PLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 375
>gi|86154056|ref|ZP_01072257.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85842470|gb|EAQ59684.1| flagellar switch protein FliY [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 280
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNIAN-GGKIGILAGAILMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDKLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L + + N + + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|52080235|ref|YP_079026.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52785612|ref|YP_091441.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|319645986|ref|ZP_08000216.1| FliY protein [Bacillus sp. BT1B_CT2]
gi|52003446|gb|AAU23388.1| flagellar motor switch protein [Bacillus licheniformis ATCC 14580]
gi|52348114|gb|AAU40748.1| FliY [Bacillus licheniformis ATCC 14580]
gi|317391736|gb|EFV72533.1| FliY protein [Bacillus sp. BT1B_CT2]
Length = 377
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/347 (8%), Positives = 89/347 (25%), Gaps = 59/347 (17%)
Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVF 83
G + +G + ++ V+I+ + + SH+ F
Sbjct: 29 SGLSLMEQDTIGEIGNISFGSSATALSTLLNQKVEITTPTVSVIEKSHLNDEFPHPYVSI 88
Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
+ +S N + + + ++G + ++ + + +
Sbjct: 89 GVSYTEGFSGNNLLVIKQEDAAIIADLMMGGDGTNADPSLGEIHLSAVQEAMNQMMGSAA 148
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202
++ S + SP D D+ + + + ++ + + + + S + + P
Sbjct: 149 TSMSTVFSKKIDISPPEVDLLDVKEGEGTEQIPKEDPLVKVSFRLKVGDLIDSHIMQLYP 208
Query: 203 QETLLKTTLISLSSQNKSENQSEDLID-------------------------------PF 231
+ E + +
Sbjct: 209 LTFAKDLIDELTNQDGGEEPVKTEEVQTPVQEKPAPNPNSAPAQTQRQEPAPKRQGTAKV 268
Query: 232 ARKTYQLNVNIDTRINLKK-------------TTLKDVVTLK-----IGQVIPF------ 267
+ + + L V L + +V+
Sbjct: 269 SEPVQVAPAEFQSFAPQTEAQPHLQNLDMLMDIPLSVTVELGRTNRSVKEVLELSTGSII 328
Query: 268 --LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ N + + E+ + +N+ +R+TD ++ ++ K
Sbjct: 329 ELDKLAGEPVDILVNQRVVAKGEVVVIDENFGVRVTDILSQAERISK 375
>gi|126732535|ref|ZP_01748333.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
gi|126706981|gb|EBA06049.1| hypothetical protein SSE37_10567 [Sagittula stellata E-37]
Length = 368
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/268 (10%), Positives = 77/268 (28%), Gaps = 19/268 (7%)
Query: 43 KKFLPKIFKEKMDLDVDISYTS----CQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
K L + D+ D++ + +S ++ + +
Sbjct: 4 AKALRRALSRTADVMWDLALVTQSVTVESLDQDGVVEGLSAKDLLVLLD-GPDGTIGLAS 62
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI--STTQES 156
++ ++E +P +R L+ + + I + + S E
Sbjct: 63 VDRQVMTGVVEVQTIQQVTQMPVDEDRVLTQTDAAMIAPLIDGTLHSMAGALADSPIGEM 122
Query: 157 SPNLEDFYDIDYLKKNTNR--LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
++ + + + +++ + I+P+ +
Sbjct: 123 LQGFRFGAMLEDARSASLLLDAAGYRAFRAQVDLALGRRKGCLSFILPERKPVP----RS 178
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ Q ++ A ++ +D ++ L TLK G V+
Sbjct: 179 AEQGGADAAGPH-----AAILDRVPARLDAVLSRITLPLSRAQTLKPGDVLKLSKDALDR 233
Query: 275 AILSAN-GKEIYSCELGRVGKNYTIRIT 301
+ A G + +G++ +R+T
Sbjct: 234 VEIIAGRGHMVAKGRMGQLNGARAVRLT 261
>gi|187732543|ref|YP_001879724.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94]
gi|187429535|gb|ACD08809.1| flagellar motor switch protein FliM [Shigella boydii CDC 3083-94]
Length = 122
Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 200 IIPQETLLKTTLISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+P + + ++ + S N+ ++ D R+ + + T L ++
Sbjct: 6 CLPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVTNFADISLRLSQILK 65
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
LK G V+P I +G + + + G + Y +RI IN
Sbjct: 66 LKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINP 111
>gi|283955446|ref|ZP_06372944.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 414]
gi|283793073|gb|EFC31844.1| putative flagellar motor switch protein [Campylobacter jejuni
subsp. jejuni 414]
Length = 280
Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 21/265 (7%)
Query: 64 SCQSGKFSHI----IHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
S + ++ + K V++ ++++ I S L+ + E ++G T
Sbjct: 24 SAEFSEYKEFDVNASDTLKAPLVYAIFNITN-GGKIGILASAVLMSAIGEWMMGEEEITK 82
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
K+ + I+ S L + ++E + + +
Sbjct: 83 NDQLGPDEMDAAKEAIQNIISAFSTTLG-AQKDIPKMDFSIESCEFVP-----ESVDFKD 136
Query: 180 FVTTINMNMTIENVASSFVLIIPQET--LLKTTLISLSSQNKSENQSEDLIDPFARK--- 234
F ++ I ++ L + Q +L L + N N++ + +
Sbjct: 137 FKKLFLYDVKIGDLEEQVSLAMDQTLHNILSGKLAETGNANTDSNRNAEEKAIMLGEELK 196
Query: 235 ----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ + + RI KK LKDV+T+ IG V+ + K I E+
Sbjct: 197 NINLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVV 256
Query: 291 RVGKNYTIRITDRINFDQKSLKNFL 315
V N+ ++IT+ I ++ L+
Sbjct: 257 IVDGNFGVQITE-IGSKKERLEQLR 280
>gi|224419056|ref|ZP_03657062.1| flagellar motor switch protein FliY [Helicobacter canadensis MIT
98-5491]
gi|253827996|ref|ZP_04870881.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313142564|ref|ZP_07804757.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
gi|253511402|gb|EES90061.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313131595|gb|EFR49212.1| flagellar protein FliY [Helicobacter canadensis MIT 98-5491]
Length = 285
Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/248 (15%), Positives = 80/248 (32%), Gaps = 21/248 (8%)
Query: 83 FSQASLSSWSSNFF-IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
++ + + + S + L + +LG T + + L ++ +
Sbjct: 44 MARVDIEADNGAKLAFFISPKVATALADMMLGGEGSTKETMDDDDLDATKE-IVSNIFGA 102
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
+S L + S +L+D + I F + + + S L
Sbjct: 103 VSTSLG-AQKELPKLSFSLKDIHFISETADLETDRFTNFY---TFSFNLGTIQDSLFLAF 158
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--------------TYQLNVNIDTRIN 247
+E S + ++ S + + + + RI
Sbjct: 159 SEEFENLFKENSQETNQETPQPSIQNTNHQDNAALELNNAEMKNMAMLLDVRLQVKVRIG 218
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
KK LKDV+ + IG V+ + + K I E+ V N+ I+IT+ I
Sbjct: 219 QKKMLLKDVIAMDIGSVVELNQLANDPLEVLVDDKVIAKGEVVIVDGNFGIQITE-IAPK 277
Query: 308 QKSLKNFL 315
+ ++ +
Sbjct: 278 KDRIEQLM 285
>gi|84686561|ref|ZP_01014454.1| possible flagellar switch protein FliM [Maritimibacter alkaliphilus
HTCC2654]
gi|84665474|gb|EAQ11951.1| possible flagellar switch protein FliM [Rhodobacterales bacterium
HTCC2654]
Length = 378
Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 19/269 (7%)
Query: 43 KKFLPKIFKEKMDLDVDISYTSCQS----GKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
+ L + + +S + Q + I+ E+ + + I
Sbjct: 29 ARILRTAIMQAGEDVAALSIVAGQPEEMRTTLAPIVEGIGEHALMALIEGPEGR-YGLIL 87
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ-CISTTQESS 157
+ + L+E P R + + + I ++ +L + +
Sbjct: 88 VDPDTLAALIEIQTTGRVVPRPATA-RPPTRTDAIMCADFIDRVLELLEDRTAEADIDIA 146
Query: 158 PNLEDFYDIDYLKKNTNRLSN-----EFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
P L F L + +++++ + +I+P
Sbjct: 147 PALGGFRYALALSEARAIPMTLDDVPYRRFHVSLDLGRGAKQGTLDVILPFN------AA 200
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + A + V + ++ + L +V L +G VIP
Sbjct: 201 PSGAAAATNADPAGFTQALAEVVGEAEVLLRGTLHRLQMPLAEVAGLSVGSVIPIPREAL 260
Query: 273 TCAILS-ANGKEIYSCELGRVGKNYTIRI 300
+ NG+ + LG G + IRI
Sbjct: 261 GQVAIEDINGRTVKHGRLGMSGGHRAIRI 289
>gi|149194334|ref|ZP_01871431.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
gi|149135509|gb|EDM23988.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
Length = 269
Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/256 (13%), Positives = 88/256 (34%), Gaps = 17/256 (6%)
Query: 63 TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ + I F+ S+S + + L + +LG E +
Sbjct: 24 PEVEIKQQGEKIVDIIPPFIKVNVSVSP-KGEIVFILTPEIATALGDMMLGGEGEARTDI 82
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
+ L ++ + +++ L + + + +ED ++ + +++
Sbjct: 83 NDEDLDATKE-IVSNIFGSLTSTL-EAQDNMENLTFKVEDIAFVETNEDF-----SKYAY 135
Query: 183 TINMNMTIENVASSFVLIIPQETL----LKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
+++ + +V ++ ++ + S ++ + +D +
Sbjct: 136 FLDLICKVASVEKECFVLFDKDFVSIFNNDIKDKISESSHELNKEIPSQLDML----MDV 191
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + RI K LKDV+++ IG ++ + K+I E+ V N+ I
Sbjct: 192 KLQLRVRIGKKTMLLKDVISMDIGSIVELDQLANEPLDILIEDKKIGEGEVVIVDGNFGI 251
Query: 299 RITDRINFDQKSLKNF 314
+IT I L +
Sbjct: 252 QITS-IGSKADRLNSM 266
>gi|311086395|gb|ADP66476.1| flagellar motor switch protein FliM [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 300
Score = 92.8 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 2 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 62 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
I+ ++ N + KK L+ F+ N I N F +I
Sbjct: 122 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 180
Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P+ L K S +N ++ + Y + VNI ++I + +
Sbjct: 181 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 239
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L +G V+ + I+ R + I I + I+ +
Sbjct: 240 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 290
>gi|219682014|ref|YP_002468398.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219621747|gb|ACL29903.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
Length = 315
Score = 92.8 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 17 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 77 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
I+ ++ N + KK L+ F+ N I N F +I
Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 195
Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P+ L K S +N ++ + Y + VNI ++I + +
Sbjct: 196 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 254
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L +G V+ + I+ R + I I + I+ +
Sbjct: 255 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305
>gi|257471133|ref|ZP_05635132.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
Length = 300
Score = 92.8 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 2 GESKNLHNEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 62 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
I+ ++ N + KK L+ F+ N I N F +I
Sbjct: 122 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 180
Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P+ L K S +N ++ + Y + VNI ++I + +
Sbjct: 181 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 239
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L +G V+ + I+ R + I I + I+ +
Sbjct: 240 YNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 290
>gi|259416357|ref|ZP_05740277.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
gi|259347796|gb|EEW59573.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
Length = 432
Score = 92.4 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/290 (8%), Positives = 85/290 (29%), Gaps = 19/290 (6%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
LAR + T S ++ + + ++ +L + + + +
Sbjct: 17 LARKLAASKE-GTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLL 75
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ + V L++ + + R+ + + +
Sbjct: 76 SDKHLLVVLDCPEGR-IGAATLDAAAVTALIQQQTMGTVLGMSG-DERNYTPTDAAMVAE 133
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193
+ ++ + + + + T + V +N+++ +
Sbjct: 134 FLEKLFGKVTNLLEDQSDLRIFEGYRFGAQVEDVRTLVLGMEADDYRVINLNVDLATGKM 193
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
L++P+ ++ ++ + + + + + + L
Sbjct: 194 QGEICLVLPEPSV-----------DEYDEANAVRGPRLGSSVGSMRAELSAVLCKMRIPL 242
Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
+ LK+G+++P ++ NG+ I LG++ +R+
Sbjct: 243 RQFSALKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQ 292
>gi|219681458|ref|YP_002467843.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219624301|gb|ACL30456.1| flagellar motor switch protein FliM [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 315
Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 20/298 (6%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 17 GESKNLHNEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 77 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136
Query: 142 ISAVLNQCIST--TQESSPNLEDFYDID---YLKKNTNRLSNEFVTTINMNMTIENVASS 196
I+ ++ +E + + N L N N I N
Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKIFFDFKKYNFDLNKLFLINC------FNFKINNTEIF 190
Query: 197 FVLIIPQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
F +IP+ L K S +N ++ + Y + VNI ++I
Sbjct: 191 FNFLIPKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISV 249
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ + L +G V+ + I+ R + I I + I+ +
Sbjct: 250 SYDKIYNLSVGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305
>gi|99081347|ref|YP_613501.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
TM1040]
gi|99037627|gb|ABF64239.1| hypothetical protein TM1040_1506 [Ruegeria sp. TM1040]
Length = 420
Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/290 (9%), Positives = 90/290 (31%), Gaps = 19/290 (6%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
LAR + T S ++ + + ++ +L + + + +
Sbjct: 17 LARKLAASKE-GTAGTGGSLTLKALRRSVARAAEDLCELPMAVIAARQTNRVPEDLTGLL 75
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ + + V L++ + + R+ + + +
Sbjct: 76 SDKHLLVVLDCPAGR-IGAATLDAAAVTALIQQQTMGTVLGMSG-DERNYTPTDAAMVAE 133
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR----LSNEFVTTINMNMTIENV 193
+ ++ A ++ + + S + T + V +N+++ +
Sbjct: 134 FLEKLFAKVSSLLEDQTDLSIFEGYRFGAQVEDVRTLVLGMEAEDYRVINLNVDLATGKM 193
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
L++P+ ++ ++ + + + + + + L
Sbjct: 194 QGEICLVLPEPSV-----------DEYDEANAIRGPRLGSSVGSMRAELTAVLCKMRVPL 242
Query: 254 KDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
+ TLK+G+++P ++ NG+ I LG++ +R+
Sbjct: 243 RQFSTLKVGELLPLDQAYLYETDLIAINGQAIAKGRLGQMNGARAVRLDQ 292
>gi|224373366|ref|YP_002607738.1| flagellar motor switch protein FliY [Nautilia profundicola AmH]
gi|223588908|gb|ACM92644.1| flagellar protein FliY [Nautilia profundicola AmH]
Length = 270
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 89/280 (31%), Gaps = 16/280 (5%)
Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
L + + + + +IS S + K + +
Sbjct: 3 EFKELLINEIKSTIEGLIGIAPEISILSETRD-----LGPTKPPYAKIVIRVKP-KGEIL 56
Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
+ L + +L +L + L +++ + + L
Sbjct: 57 FLIPAEIATALGDLMLAGEGTPKTELNDDDLDAIKE-IISNVFGALKTTLG-AQDNMPNL 114
Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
+ + + +D +E+ INM + +V ++ + + S
Sbjct: 115 DFEIANVFAVD-----KEEDISEYAYAINMECKVNDVVKVCQVVFDESVYDILNPSTKSE 169
Query: 217 QNKSENQSEDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ + +++ +L + + + RI K LKDV+ + IG ++ K
Sbjct: 170 GSSTPSKAVELKGEMKNLEMLLDIKLQLRVRIGSKIMLLKDVIGMDIGSIVELNQLAKEP 229
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ K+I E+ V N+ I+IT I ++ L +
Sbjct: 230 LDILIEDKKIGEGEVVIVDGNFGIQITS-IGSREERLNSL 268
>gi|217031647|ref|ZP_03437152.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
gi|298736643|ref|YP_003729169.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
gi|216946847|gb|EEC25443.1| hypothetical protein HPB128_21g205 [Helicobacter pylori B128]
gi|298355833|emb|CBI66705.1| flagellar motor switch protein FliN/FliY [Helicobacter pylori B8]
Length = 287
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/285 (16%), Positives = 96/285 (33%), Gaps = 27/285 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S + +++ S+ + +LV
Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVKISAIEKEESSIELLAPVDLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
+ E + + +E + S ++++ E + Q + E ++
Sbjct: 126 TNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFEDQFKK--THQEEKEEATK 183
Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
I+ + +N+ RI KK LKDVV++ IG V+
Sbjct: 184 STIEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|157373222|ref|YP_001471822.1| hypothetical protein Ssed_0081 [Shewanella sediminis HAW-EB3]
gi|157315596|gb|ABV34694.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
Length = 288
Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 28/297 (9%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
+ P+ L+ + ++ S L I ++ IS T
Sbjct: 16 ERVRPV--ALIQEKLARSRLLIQVDACQRSFLEAANGVLNPIIRQGHHALSSISLTDSDQ 73
Query: 68 GKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
++ + + + + L G S T+ + R+
Sbjct: 74 S----VVPDINNGWFLLRYQRLPLAWW---RIDKCTLDQLASGYYG-SLATLLKSPLRAP 125
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S E +LAK+ + VL P E + L+ N + +
Sbjct: 126 SQSEFRLAKKLMLAALKVL-----------PTAELDENALELELVVNSTPIDSPVIWEIA 174
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+E+ + + + + L +S Q + DL + + + Q+ + I +
Sbjct: 175 FPVEHKVAPMLFCMT-----EHLLGLMSEQPSQYMATPDLAEKLSYRLRQIPIKILFELG 229
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ T + + L++G ++P + + ++ + ++ I
Sbjct: 230 RQSTPVTSLHGLEVGDILPMNLHSRCPVT--VGKRPLFYAAIHTHDGQMVAKLAQDI 284
>gi|237751753|ref|ZP_04582233.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
gi|229373119|gb|EEO23510.1| flagellar motor switch protein FliY [Helicobacter bilis ATCC 43879]
Length = 283
Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/283 (16%), Positives = 105/283 (37%), Gaps = 12/283 (4%)
Query: 37 SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFF 96
L+ + + M +++T ++ + V + + +S S
Sbjct: 8 DFIELFIQEMVATIDGMMGRTAVVTHTGDTEVS-DSLLGTPFGKVVVNVSLGASQVSTLC 66
Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
NL L + ++G +T + + +K K I+ L + ++
Sbjct: 67 FIMPENLATALPDLMMGGEGDTGKDMMD----DDDKDGLKEVFQSITGALATALGGHEKL 122
Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT-TLISLS 215
D+ ++ ++F T ++ I++V S +++ + L +
Sbjct: 123 PHFSFAIADVSNVES--EGSLSDFDTASRFDVGIDSVKSELIMLTKNDLLTHVPKDLKAP 180
Query: 216 SQNKSENQSEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S N+ L D R + +++ RI K+ LKDV+++ IG V+
Sbjct: 181 ASTASGNKDVSLSDKEMRNIGMLLDIGLSVKVRIGQKRMLLKDVISMDIGSVVELNQLAS 240
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ N K I E+ V N+ I+IT+ I ++ L++
Sbjct: 241 DPLEILVNDKIIGKGEVVVVDGNFAIQITE-IGTKKERLESLR 282
>gi|10802799|gb|AAG23621.1|AF244672_1 flagellar motor switch protein [Carboxydothermus hydrogenoformans]
Length = 153
Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
+ ++ L G S + P++ R L+ +E + K+ ++ L Q + + P +E
Sbjct: 1 EFIFPIISLLFGGSGDMPPEV--RELTDIELAVIKKLNYRLLENLAQAWAEIIKVEPEIE 58
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
+ + + NE V I I L +P E L +S
Sbjct: 59 ALE--NNPRLHQVLSPNEIVAIITFTTEILGNNGLINLCLPFEVLDPLLAKLSAS 111
>gi|114798089|ref|YP_759234.1| SPOA domain-containing protein [Hyphomonas neptunium ATCC 15444]
gi|114738263|gb|ABI76388.1| SPOA domain protein [Hyphomonas neptunium ATCC 15444]
Length = 325
Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/302 (11%), Positives = 77/302 (25%), Gaps = 33/302 (10%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
P P L+ T + L + +E L S
Sbjct: 40 TEPEAVPA-PKLVQEFTPA---PPAQGEAREEAARRISARLSRAMREHCGLAAAFSVKRV 95
Query: 66 QSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
+ + + E S + + L ++E G +P
Sbjct: 96 SPASLAQAVSARDEPGQAIVCCSGADGDVAAMLVIGAGLAQIMIETACGG---PVPNGQP 152
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
++LS ++ L + ++ L + + I
Sbjct: 153 KALSPIDLALVEGLTRPLA----------PFIGRGLGFAGVETDPLFAASIAAPGVAYEI 202
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+++ L+ +LK L + + V +
Sbjct: 203 TLSVRAGGADWPARLL-----VLKPFLAEAPEAEAAPTRGAHASGALT-------VLMTA 250
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE---IYSCELGRVGKNYTIRIT 301
R+ + + + +L+ G + L + G + ++GR G +RI+
Sbjct: 251 RVARVEMPISRLTSLRPGVTLLLGVPADQPVELLSGGLDGDVAAEAQIGRKGNRMALRIS 310
Query: 302 DR 303
R
Sbjct: 311 KR 312
>gi|15616702|ref|NP_239914.1| flagellar motor switch protein FliM [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386787|sp|P57182|FLIM_BUCAI RecName: Full=Flagellar motor switch protein FliM
gi|25403543|pir||H84938 flagellar motor switch protein fliM [imported] - Buchnera sp.
(strain APS)
gi|10038765|dbj|BAB12800.1| flagellar motor switch protein fliM [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 315
Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 10/293 (3%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 17 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 76
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 77 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 136
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
I+ ++ N + KK L+ F+ N I N F +I
Sbjct: 137 ITNAFSEIYKKYFVKEINFFNTKTFFDFKKYNFDLNKLFLINC-FNFKINNTEIFFNFLI 195
Query: 202 PQETL-----LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
P+ L K S +N ++ + Y + VNI ++I + +
Sbjct: 196 PKSILKYQNEKKFFSTYDSHKNTCIEKNIENKVSLND-IYNVEVNIISKIIGISVSYDKI 254
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L IG V+ + I+ R + I I + I+ +
Sbjct: 255 YNLSIGDVLSIKKP--NKITGFIQDQAIFLGNYKRFNEQSIIFIEEFIDSSSE 305
>gi|242309555|ref|ZP_04808710.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
gi|239524126|gb|EEQ63992.1| flagellar protein FliY [Helicobacter pullorum MIT 98-5489]
Length = 284
Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 76/238 (31%), Gaps = 21/238 (8%)
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+N + S + L + +LG + N L ++ + IS L
Sbjct: 54 DANLALFISPKVATALADMMLGGEGTAKDTMDNDDLDATKE-ITSNIFGAISTSLG-AQK 111
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
+ S L++ I + + F + ++ + K+
Sbjct: 112 ELPKLSFTLKNIQFITEDSELGLENFSGFY---TFAFNLGSIQDFLYFAF-SSSFEKSFN 167
Query: 212 ISLSSQNKSENQSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVV 257
+ + + + + + + + + RI KK LKDV+
Sbjct: 168 PNTTEDSDNVALDANTQTEAEEEKFELNNAGLKNIAMLLDVRLQVKVRIGQKKMLLKDVI 227
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ IG V+ + + K I E+ V N+ I+IT+ I + ++ +
Sbjct: 228 AMDIGSVVELNQLANDSLEVLVDDKVIAKGEVVIVDGNFGIQITE-IAPKKDRIEQLM 284
>gi|332799188|ref|YP_004460687.1| MCP methylation inhibitor CheC / FliN fusion protein
[Tepidanaerobacter sp. Re1]
gi|332696923|gb|AEE91380.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Tepidanaerobacter sp. Re1]
Length = 376
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/347 (9%), Positives = 90/347 (25%), Gaps = 65/347 (18%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQAS 87
+ +G + + V I+ + ++ +
Sbjct: 26 REEMDALGEIGNISIGTSATTLYSLLRNKVVITTPKVYITNIKKLKEAYPIPFISIEVSY 85
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + + + ++G + + + + + + + L+
Sbjct: 86 TKGLNGSTLMIMKEDDAKIIADLMMGGDGSNVDVELDDIRMSAVGEAMNQMMGSAATSLS 145
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN--MNMTIENVASSFVLI-IPQE 204
+ SP ++ +E + TI+ M + + L+ IP
Sbjct: 146 IMLKKDINISPPRVTRINLATDSLKGYFDEDEDIVTISFKMEVGDFLKSEIMQLMPIPFA 205
Query: 205 TLL--------------------------------------------------KTTLISL 214
L
Sbjct: 206 KSLVEQLYTLSLSETTTNTDSINNEKINEEPKQIHSEQTSVRNITEQEAVLTMPQKEPLK 265
Query: 215 SSQNKSENQSEDLIDPFARK-----------TYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
S+QN F + + + + + + T+K+++ + G
Sbjct: 266 SAQNAEVTVKPVEFHTFKEEPTAAQSSSLNLILDVPLEVTVELGRTEKTIKEILEISSGT 325
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+I A + NGK + E+ + +N+ +RIT+ IN +
Sbjct: 326 IIELDKMAGEPADILVNGKLVAKGEVVVIDENFGVRITEIINSVDRV 372
>gi|110680043|ref|YP_683050.1| hypothetical protein RD1_2838 [Roseobacter denitrificans OCh 114]
gi|109456159|gb|ABG32364.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 382
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/260 (10%), Positives = 74/260 (28%), Gaps = 12/260 (4%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
L K+ + + + + + + ++ +++ + NLV
Sbjct: 30 LAKVADDAFHMALAVIGVTQERCAAENLSDKIEDDSLLVLLD-GPAGVTGGAVIGANLVN 88
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNLE 161
L++ P +R L+ + L + + +L +
Sbjct: 89 ALVQQQTMGRV-LPPTSASRPLTETDAALCAPVLDALFIRANGLLETPEDKRVLPAFKFG 147
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
D L V + ++++ S+ LI+P + ++SE
Sbjct: 148 ARADSQRLFALALEEPEYTVLKLTIDVSGGITQSTLSLILPLPKAVPER-----QSSESE 202
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280
+ + + + + +L ++ L+ G + L
Sbjct: 203 TADPGSPATLEKSVMAVTAELSAVLCRVRVSLSEMSRLRPGHTLSIPANAFESVELLSIE 262
Query: 281 GKEIYSCELGRVGKNYTIRI 300
G + +G++ + +
Sbjct: 263 GARVARGSMGQIDGKRALML 282
>gi|317177229|dbj|BAJ55018.1| flagellar motor switch protein FliY [Helicobacter pylori F16]
Length = 287
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 25/284 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S +++ S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISTPYARVVISAIEKEESSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L + + +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKFNFTTINAEIA 131
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
L K ++ I + +E + S ++++ + + Q + E +++
Sbjct: 132 KELPKKE-----DYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEEKTKS 184
Query: 227 LIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + +N+ RI KK LKDVV++ IG V+
Sbjct: 185 ATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 244
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 245 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|254440956|ref|ZP_05054449.1| Surface presentation of antigens protein [Octadecabacter
antarcticus 307]
gi|198251034|gb|EDY75349.1| Surface presentation of antigens protein [Octadecabacter
antarcticus 307]
Length = 330
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 19/287 (6%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L R D + + L + + + L + + + +I S
Sbjct: 14 LTRAIPPADDAAPATPMRQMR-----RALGRAADKAVGLSASVLGIAEEDLDSEGLIESG 68
Query: 78 KENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
E +V S + L L+E R ++ V+ ++
Sbjct: 69 PEGWVVLGLRDGSSAGLTGLFLMDQPLRSALVEMQTMGCL-LPAADEQRRVTRVDAVMSV 127
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL--SNEFVTTINMNMTIENVA 194
+Q+ A L + + P D ID L+ + N I + M +
Sbjct: 128 PFASQLLAELAEVGFGAADFEPTAYDIGPIDDLRTAGLVMLQGNYRCWRITIQMGGGDAQ 187
Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
++ + S ++ S +D + +
Sbjct: 188 GEMLIAL--------RPKVPVSSLPVKDTS-VWSMALRSAVQDAPAELDAVLTRMTLPIH 238
Query: 255 DVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300
+ ++G V+ L+ G+ I + LG+V +R+
Sbjct: 239 KIEAFEVGHVLNLAGTTVGLVTLTGPGGEIISTARLGQVAGKRAVRV 285
>gi|34557953|ref|NP_907768.1| flagellar motor switch protein FliY [Wolinella succinogenes DSM
1740]
gi|34483671|emb|CAE10668.1| FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
Length = 289
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 84/255 (32%), Gaps = 26/255 (10%)
Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
+ + S L L + +LG E+ ++ + K
Sbjct: 42 PMALIYLNTTGEGSGKIAFLVPPALGTALADLMLGGEGESREEMSEDDVDAT-----KEI 96
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ I ++ +S +E D+++ + L + F + ++ + S
Sbjct: 97 ASNIFGAISTALSAQKELPKLNFAPEKADFVQGGSIDL-SSFEKIFTFSFSLNTIRSELY 155
Query: 199 LIIPQETL---LK---------------TTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
L + + ++ S + N SE + + +
Sbjct: 156 LAVDSSFVKIFEPKSAPSASASSYSESGSSFGGSYSGAPNVNLSEPEMKNIGM-LLDVKL 214
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ RI KK LKDV+++ IG V+ + + K I E+ V N+ I+I
Sbjct: 215 QVKVRIGQKKMLLKDVISMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQI 274
Query: 301 TDRINFDQKSLKNFL 315
T+ I ++ L+
Sbjct: 275 TE-IGTKRERLEQLR 288
>gi|302872558|ref|YP_003841194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor obsidiansis OB47]
gi|302575417|gb|ADL43208.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor obsidiansis OB47]
Length = 375
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/350 (12%), Positives = 97/350 (27%), Gaps = 68/350 (19%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ + +G + ++ V+I+ K+ + F
Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSVLKWDELPKEFPVPYVAIKVV 86
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
+ V + + ++G + E QL LS +++ + + S
Sbjct: 87 YKEGLDGINLLILKKEDVEIIADLMMGGTGQVEFTEQLTELQLSAIQEA-MNQMVGSAST 145
Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
L+ ++ + +P + + + + + I MTI + + S + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205
Query: 202 P---------------------------------------QETLLKTTLISLSSQNKSEN 222
P Q T S Q+ +
Sbjct: 206 PVDFAKQLVDAMFKNTFNASAQAETSAKSHSETVKEETLKQPASQPTNKQKTSPQSYTPP 265
Query: 223 QSEDLIDPF------------ARKTYQLNVNIDTRIN---LKKTTLKD-------VVTLK 260
++ + + NI+ ++ L ++
Sbjct: 266 PKKEQPQQVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFS 325
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G +I + NGK I E+ + +N+ +RITD +N +
Sbjct: 326 TGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375
>gi|308184221|ref|YP_003928354.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
gi|308060141|gb|ADO02037.1| flagellar motor switch protein FliY [Helicobacter pylori SJM180]
Length = 287
Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 23/283 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + + S + +++ S + +LV
Sbjct: 14 STLEGLVGKALSVGLEKEVSSSEESFLKLISVPYARVKISAIEKEESPIELLAPVDLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLL------KTTLISLSSQNK 219
+ E + + +E + S ++++ ++++
Sbjct: 126 TNAEIAKEIPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKNHKEEKEEATKSA 185
Query: 220 SENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+E + + +N+ RI KK LKDVV++ IG V+
Sbjct: 186 TEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|163731544|ref|ZP_02138991.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
gi|161394998|gb|EDQ19320.1| hypothetical protein RLO149_19609 [Roseobacter litoralis Och 149]
Length = 382
Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/268 (10%), Positives = 74/268 (27%), Gaps = 12/268 (4%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
L K+ D+ + + + + + +E+ + LV
Sbjct: 30 LAKVADTAFDMALAVIGVTQERCAAEDLPEKIEEDSLLILLD-GPAGVTGGAVVGAALVN 88
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNLE 161
L++ R L+ + L + + +L +
Sbjct: 89 ALVQQQTMGRVLPPA-PNARPLTATDAALCAPVLDALFIRANGLLETPEDKQILPAFKFG 147
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
D L V + ++++ S+ L++P + ++ E
Sbjct: 148 ARADSQRLFSLALEEPEYTVLKLTIDVSGGIAQSTLTLVLPIPKAVPERHN-----SEGE 202
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280
+ + + + + + +L ++ L+ G + +
Sbjct: 203 SAAPGSPATLEHSVMAVTAELSAVLCRVRVSLSEMSRLRPGDTLSIPSNAFDSVEVLSIE 262
Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQ 308
G I +G+V + ++ + DQ
Sbjct: 263 GARIARGAMGQVDGKRALMLSQTSSSDQ 290
>gi|221209605|ref|ZP_03582586.1| bcscQ [Burkholderia multivorans CGD1]
gi|221170293|gb|EEE02759.1| bcscQ [Burkholderia multivorans CGD1]
Length = 441
Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/292 (13%), Positives = 75/292 (25%), Gaps = 21/292 (7%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
L P+ G D I ++L L + V++ + H
Sbjct: 158 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 216
Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
F W + + + + A+ P + +
Sbjct: 217 AS---PSALRFELRRADGAWRCHGALLFDAPDALAV----FFATAPAAPPDAAALYANLP 269
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +E + + + I
Sbjct: 270 VPLAFELGRTALTAAELA-DVVAGDIIAIEHWRAHEQDLLCVAYVRAAPAWEITGRPAGN 328
Query: 192 NVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ + +P L + ++ + R L V++ +
Sbjct: 329 RLTVQRIREMP---LEPPRTDSASAAAPDTPPADAP------RSLDGLAVDLRFELPPTS 379
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++VTL+ G VI H L ANG I + +L VG+ +R+
Sbjct: 380 MPLGELVTLQPGAVIELPHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 431
>gi|217033288|ref|ZP_03438719.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
gi|216944229|gb|EEC23654.1| hypothetical protein HP9810_9g41 [Helicobacter pylori 98-10]
Length = 287
Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 94/286 (32%), Gaps = 29/286 (10%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105
+ + + + S +++ S+ + LV
Sbjct: 14 STLEGLVGKTPSVGLEK-EVSNSEEAWGSLISAPYARVVISAIEKEESSIELLAPVVLVT 72
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 73 ALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FT 124
Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
+ E I + +E + S ++++ + Q + E +
Sbjct: 125 TINAEIAKELPKKEDYAKMIAFSFKMEALKESQIILLTTAAFEHQFEK--THQEEKEETT 182
Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + K + +N+ RI KK LKDVV++ IG V+
Sbjct: 183 KSATEEVKTKDESLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|317010691|gb|ADU84438.1| flagellar motor switch protein FliY [Helicobacter pylori
SouthAfrica7]
Length = 282
Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 16/277 (5%)
Query: 48 KIFKEKMDLDVDISY-TSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + + + + +I + + S S S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNDEEADLISAPYARVMISAIDKSE--SHIELLAPVGLVTA 71
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L + + +
Sbjct: 72 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTNAEIA 129
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
L K + M + +L+ T S + +++
Sbjct: 130 KDLPKKE---DYTKAMVFSFKMEALKESQMILLVTSAFESQFETKKEPESAESATEETKT 186
Query: 227 LIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ +N+ RI KK LKDVV++ IG V+ +
Sbjct: 187 HDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLEILV 246
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 247 DDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 282
>gi|317181759|dbj|BAJ59543.1| flagellar motor switch protein FliY [Helicobacter pylori F57]
Length = 287
Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 93/285 (32%), Gaps = 27/285 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
+ + + S + S S+ + +LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISVPYARVMISAIEKEESSIELLAPVDLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ + L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDDDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
+ E I + +E + S ++++ + + Q + E ++
Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEETTK 183
Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + +N+ RI KK LKDVV++ IG V+
Sbjct: 184 SATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|300871252|ref|YP_003786125.1| flagellar motor switch protein FliN [Brachyspira pilosicoli
95/1000]
gi|300688953|gb|ADK31624.1| flagellar motor switch protein, FliN [Brachyspira pilosicoli
95/1000]
Length = 348
Score = 89.3 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 40/294 (13%)
Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS-SNFFIGCSNNLVITL 107
V I+ + G S++ + ++ S + + N + +T+
Sbjct: 58 SLSSISTKTVSITNITTTVGDVSNLHQMLSGKVIEAKVSYTGSANGNVYYFMDEKEALTI 117
Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
+ G L+ + ++ K +Q+ V + +++ +
Sbjct: 118 ASLMTG--------QAETDLNDMVAQVLKEAFSQMIGVSDSALTSKFGGNFTNAPVETSI 169
Query: 168 YLKKNTNRLSNEFVTT---INMNMTIENVASSFVLIIPQ-ETLLKTTLISLSSQNKSENQ 223
+ ++ ++++ I+N F +P + +L + S+ NK+
Sbjct: 170 LDDSASISITGPLAIVSGSLSIDGEIDNAPYIFAFELPVLQAILSNASKTTSNANKTSAS 229
Query: 224 SEDLIDPFAR---------------------------KTYQLNVNIDTRINLKKTTLKDV 256
S + + +N+ + T+KD+
Sbjct: 230 SNNNTQANDNGKQLGVQHAEFNSLMPASDVQGTGNIGLLMDVTMNMTVELGRATMTIKDI 289
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L G +I L NGK I E+ + +N+ +R+TD I+ +
Sbjct: 290 LGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDENFGVRVTDIISPMDRL 343
>gi|169827133|ref|YP_001697291.1| flagellar motor switch protein [Lysinibacillus sphaericus C3-41]
gi|168991621|gb|ACA39161.1| Flagellar motor switch phosphatase [Lysinibacillus sphaericus
C3-41]
Length = 407
Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/309 (11%), Positives = 80/309 (25%), Gaps = 38/309 (12%)
Query: 14 HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A + G G E S++ + + + VDIS +
Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180
Query: 67 SGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
S + E+ + + S N +NL+ L
Sbjct: 181 LMNISQNEGRENIPEDDLLVKVSFRLKIGNL---IDSNLMQLL----------------- 220
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR--LSNEFVT 182
K ++ + + + ++ + V
Sbjct: 221 ------PLKFSQNIVKSLLGETESIEEPVAATIAPEAPPITAPPVQTQAPVMPPPAQPVY 274
Query: 183 TI-NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
M P + + N + +
Sbjct: 275 QQPEATMQQPVYQEPQQFAQPARAAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQ 334
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + K ++K+++ L G +I + N + I E+ + +N+ +RIT
Sbjct: 335 VTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRIT 394
Query: 302 DRINFDQKS 310
D ++ ++
Sbjct: 395 DVLSQAERL 403
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57
+RG+++ S + + +G + +
Sbjct: 15 LRGETLEDKNSGTEASSIDETNDLRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116
VDI+ S + + F +V Q + + + + + + +LG
Sbjct: 75 VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ ++ + + + ++ + + SP D +I + N
Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQNEGRENIP 194
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222
++ + ++ + I N + S+ + ++P + L E
Sbjct: 195 EDDLLVKVSFRLKIGNLIDSNLMQLLPLKFSQNIVKSLLGETESIEE 241
>gi|317009062|gb|ADU79642.1| flagellar motor switch protein FliY [Helicobacter pylori India7]
Length = 290
Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 26/286 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
+ + + S + + S + + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVMLSAIEKEEGSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAITTSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK--------TTLISLSSQ 217
+ E T + + +E + S ++++ + ++ S
Sbjct: 126 INAEIAKELPKKEDYTKAVVFSFKMEAIKESQIILLTTAAFERQFEKTHKEEKEETIKST 185
Query: 218 NKSENQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
++ + + + +N+ RI KK LKDVV++ IG V+
Sbjct: 186 TEATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 245
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 246 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290
>gi|299534774|ref|ZP_07048104.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
gi|298729862|gb|EFI70407.1| flagellar motor switch protein [Lysinibacillus fusiformis ZC1]
Length = 410
Score = 89.3 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/311 (11%), Positives = 85/311 (27%), Gaps = 39/311 (12%)
Query: 14 HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A + G G E S++ + + + VDIS +
Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180
Query: 67 SG--KFSHIIHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
+ E+ + + S SN ++++LLG +
Sbjct: 181 LMNISQDEGRENIPEDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETGVF- 239
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
E+ +A + V + +P E + E
Sbjct: 240 -----------EEPVAATIAPEAPPVTPPPVQQQIPVAPPSEQPVYQQQSAPMQQPIYQE 288
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
P + + + N +
Sbjct: 289 P-------------QQFAQPARPAQPAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIP 335
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++K+++ L G +I + N + I E+ + +N+ +R
Sbjct: 336 LQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVR 395
Query: 300 ITDRINFDQKS 310
ITD ++ ++
Sbjct: 396 ITDVLSQAERL 406
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57
+RG+++ + + + +G + +
Sbjct: 15 LRGETLGDKNNDTDASTNEEINEIRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116
VDI+ S + + F +V Q + + + + + + +LG
Sbjct: 75 VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ ++ + + + ++ + + SP D +I + N
Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQDEGRENIP 194
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222
++ + ++ + I N + S+ + ++P + L E
Sbjct: 195 EDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETGVFEE 241
>gi|297379638|gb|ADI34525.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
Length = 287
Score = 88.9 bits (219), Expect = 8e-16, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 25/284 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
+ + + S + S S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISVPYARVMISAIEKKESSIELVAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L + + +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKFNFTTTNAEIA 131
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
L K ++ + + +E + S ++++ + + Q + E ++
Sbjct: 132 KELPKKE-----DYAKMMVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEETTKS 184
Query: 227 LIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + +N+ RI KK LKDVV++ IG V+
Sbjct: 185 AAEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 244
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 245 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|15606467|ref|NP_213847.1| hypothetical protein aq_1238 [Aquifex aeolicus VF5]
gi|2983683|gb|AAC07248.1| putative protein [Aquifex aeolicus VF5]
Length = 182
Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 13/195 (6%)
Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
+LG +L + S +E + + + + + + ++ D + +
Sbjct: 1 MMLGGE---PYELEGKPFSRLEMSMLTKLSESFCSTFREVWNEF--FTRDVTDCELSENV 55
Query: 170 KKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID 229
+ ++ + + E + S L P L + +
Sbjct: 56 YELDL---DDDHYVAELGVENETLKRSLFLAFPLYLLKEIKEELS-----MRKPDPKERE 107
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
++ VN++ + +K L VV + G VI + + G+ + L
Sbjct: 108 ELLSALLKVPVNLEVLLFKRKDKLNKVVNMGKGFVILTGKTPQEEVEVLVQGRLKFLGIL 167
Query: 290 GRVGKNYTIRITDRI 304
G ++I+ +
Sbjct: 168 GEKNGKRAVKISKIL 182
>gi|313672896|ref|YP_004051007.1| flagellar motor switch protein flin [Calditerrivibrio nitroreducens
DSM 19672]
gi|312939652|gb|ADR18844.1| flagellar motor switch protein FliN [Calditerrivibrio nitroreducens
DSM 19672]
Length = 289
Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 86/274 (31%), Gaps = 20/274 (7%)
Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLG 113
S G+ + I + + + L+ + + +L
Sbjct: 25 GKSFQFQVESVSEGELNDIALEYMGQTLINIKESLNGIDGGIL--IDTLTITGFADLMLM 82
Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNT 173
S E + +L + + K I Q + +N + + L ++
Sbjct: 83 GSGEGVQELNDDLKDAI-----KELINQTISAMNIPFNDEFKKKVAFGVISVDTLLDTSS 137
Query: 174 NRLSNEFVTTINMNMTIENVASSF-------VLIIPQETLLKTTLISLSSQNKS---ENQ 223
N + I+ + +NV LI+ + S + + Q
Sbjct: 138 YVG-NILIFDISGSFDGKNVKFKIFFSSKLKNLIMVESAEDDDFDFSPEVTAVNPMPKQQ 196
Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
+ V + RI K LKD+V+L G ++ + ++ N K
Sbjct: 197 KTTYGGKNIDLLLDVEVPVSIRIGSTKMFLKDIVSLSPGNIVELDEYAEEPVVVMVNNKP 256
Query: 284 IYSCELGRVGKNYTIRITDRINFDQKSLKNFLHK 317
I E+ V + +RI + I+ +++ +K K
Sbjct: 257 IAKGEVVIVDGYFGVRIKEIISKEER-IKKLRDK 289
>gi|317179189|dbj|BAJ56977.1| flagellar motor switch protein FliY [Helicobacter pylori F30]
Length = 287
Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 29/286 (10%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105
+ + + + S +++ S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEK-EVSHSEEAWGSLISAPYARVVISAIEKEESSIELLAPVVLVT 72
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 73 ALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FT 124
Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
+ E T I + +E + S ++++ + + Q + E +
Sbjct: 125 TINAEIAKELPKKEDYTKMIAFSFKMEALKESQIILLTTVAFERQFEK--THQEEKEETT 182
Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + +N+ RI KK LKDVV++ IG V+
Sbjct: 183 KSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|157164750|ref|YP_001467211.1| flagellar motor switch protein FliY [Campylobacter concisus 13826]
gi|112799931|gb|EAT97275.1| flagellar motor switch protein [Campylobacter concisus 13826]
Length = 284
Score = 88.9 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/292 (15%), Positives = 105/292 (35%), Gaps = 20/292 (6%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENFVFSQASLSS-W 91
+++ ++ L + +I + +F + K V + +LS
Sbjct: 1 MTNEFFNIFSNELKATIEGLTGRTPEIG----ERNEFDAPAQNGIKPPVVMASVTLSGDI 56
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
++ I C+ L+ + E ++G N +L + E AK + + + + +
Sbjct: 57 NAKAEIACTPVLISAVSEWMMG----EEEISKNENLGSDELDAAKEIFSNLFSAFSTSLG 112
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LK 208
+ + ++++L +N++ + F N+ IE++ + +
Sbjct: 113 AQKGMPKISFEVINVNFLDENSSLDFSVFEKLFLFNIKIEDLNEHVAFVCDHTLMRFFEP 172
Query: 209 TT----LISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ ++ + E + + + + RI K+ LKDV+T+ IG
Sbjct: 173 AKSEPVDAAKAAAAPHALKGEFSAEEMRNIGLIMDVRLPMRVRIGSKRMLLKDVLTMDIG 232
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
VI + K I E+ + N+ I+IT I ++ L+
Sbjct: 233 SVIELNQLANDPLEILIGDKVIALGEVVIIDGNFGIQITQ-IGSKRERLQQL 283
>gi|261837850|gb|ACX97616.1| flagellar motor switch protein [Helicobacter pylori 51]
Length = 287
Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/285 (16%), Positives = 93/285 (32%), Gaps = 27/285 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S +++ S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSHSEEAWGSLISVPYARVVISAIEKEESSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
+ E I + +E + S ++++ + Q + E +++
Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFEHQFEK--THQEEKEEKTK 183
Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + +N+ RI KK LKDVV++ IG V+
Sbjct: 184 SATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|254779109|ref|YP_003057214.1| flagellar motor switch protein FliY [Helicobacter pylori B38]
gi|254001020|emb|CAX28964.1| Flagellar motor switch protein FliY [Helicobacter pylori B38]
Length = 287
Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 43/282 (15%), Positives = 92/282 (32%), Gaps = 21/282 (7%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S + +++ S+ + +LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEESFLKLISVPYARVKISAIEKEESSIELLAPVDLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLNFTTTN 127
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL-----KTTLISLSSQNKSE 221
+ K + + + + +E + S ++++ + +
Sbjct: 128 AEIAKELPKKEDYTKAMV-FSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEETTQSAT 186
Query: 222 NQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ + + +N+ RI KK LKDVV++ IG V+
Sbjct: 187 EEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|307718612|ref|YP_003874144.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
6192]
gi|306532337|gb|ADN01871.1| hypothetical protein STHERM_c09240 [Spirochaeta thermophila DSM
6192]
gi|315186375|gb|EFU20135.1| flagellar motor switch protein FliN [Spirochaeta thermophila DSM
6578]
Length = 350
Score = 88.5 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/322 (10%), Positives = 87/322 (27%), Gaps = 47/322 (14%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ +L V++ ++ + I E V
Sbjct: 33 SPEELRKFRALLQNTVASQAANLSMLTGKQVEVQPPEVKAVQAETFIRGLPEQVVKVDIP 92
Query: 88 L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ V TL+ LL N L+ + ++Q++ +
Sbjct: 93 FTEGTRAAHGYVLDRE-VSTLIAGLLMGQ-------ENVELTEAAVSALQEGLSQMNGPV 144
Query: 147 NQCISTTQESSPNLEDFYDIDYLKK-----NTNRLSNEFVTTINMN----MTIENVASSF 197
+ + ++ + ++ E+ I+ + +V
Sbjct: 145 VTSLGDVSGMTILTAPAQGAEFSRDQLNLDVPEVVTAEYPVVIDGVGHKVIEFFDVPFVR 204
Query: 198 VLIIP--QETLLKTTLISLSSQNKSENQSEDL---------------------------I 228
L+ P S S+Q + QS+
Sbjct: 205 SLVNPSRPSPSQPANQASTSAQGATMAQSQGQPTVWGPGAPQVQQVQFPSFPEGALGPEQ 264
Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
+ + + + K +K+++ + G +I + N K I E
Sbjct: 265 QANISLLMDVYMELTVELGRTKKMVKEILAMGEGTIIELDKLAGEPVDILVNHKLIARGE 324
Query: 289 LGRVGKNYTIRITDRINFDQKS 310
+ + +N+ +R+T+ I+ ++
Sbjct: 325 VVVIDENFGVRVTEIISPLERL 346
>gi|315586409|gb|ADU40790.1| flagellar motor switch protein [Helicobacter pylori 35A]
Length = 287
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 94/285 (32%), Gaps = 27/285 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S +++ ++ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWGSLISVPYARVVISAIEKEENSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE 225
+ E I + +E + S ++++ + + Q + E +++
Sbjct: 126 INAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEEKTK 183
Query: 226 DLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + +N+ RI KK LKDVV++ IG V+
Sbjct: 184 STTEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|310814876|ref|YP_003962840.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare
Y25]
gi|308753611|gb|ADO41540.1| possible flagellar switch protein FliM [Ketogulonicigenium vulgare
Y25]
Length = 340
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/292 (10%), Positives = 80/292 (27%), Gaps = 29/292 (9%)
Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
+ ++ + E L ++ G I+ + + + +
Sbjct: 24 QRVLRQSFARALTEVGGLRATLALPDVGEGVLDDILPALPDGMILFSLVCDG-DIVGLMA 82
Query: 99 CSNNLVITLLENLLGASH-----------ETIPQLYNRSLSTVEKKLAKRTIAQISAVL- 146
L + ++E + R ++V++ L + + L
Sbjct: 83 FDAQLRMAVVEAQTLGEPYHASMPEPRGEPYHASMPERPRTSVDEVLCQPVADRCITDLI 142
Query: 147 NQCIST------TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVL 199
+ ++ Q + + LS+ + + + I A S VL
Sbjct: 143 AEALAAPTSGWSVQAWVEGVVCDRPFSGGRDAAFALSHGAYRQMRIGVGISAERAGSLVL 202
Query: 200 IIPQETLLKTTLISLSSQNKSENQSED--------LIDPFARKTYQLNVNIDTRINLKKT 251
++P E + ++ + R V++ ++ +
Sbjct: 203 LLPVEGARAAVAQRRKLAEDAPARAVEASRSRHAGWSLSINRNVMGAAVDLQAVLHRMRL 262
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAI-LSANGKEIYSCELGRVGKNYTIRITD 302
L + G V+ + + + +LG+ G IR+ +
Sbjct: 263 PLSQIEGWAAGDVVMMPGASLAAVRLVGVADTPVGTGQLGKAGGMRAIRMKE 314
>gi|28211378|ref|NP_782322.1| flagellar motor switch protein [Clostridium tetani E88]
gi|28203819|gb|AAO36259.1| flagellar motor switch protein fliN [Clostridium tetani E88]
Length = 416
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/354 (11%), Positives = 99/354 (27%), Gaps = 75/354 (21%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + + V+I+ + + + ++F+ V S
Sbjct: 57 KDLLGEIGNISMGSASTALSNIIKQQVNITTPVVSATTLNKLKNTFEVPNIVLEVKYTSG 116
Query: 91 WSSNFFIGCSNNLVITLLENLLGASH-----------------ETIPQLYNRSLSTVEKK 133
+ + ++G E + Q+ S +++
Sbjct: 117 ILGENLLVMKITDAAVVANLMMGGDGIVKDVTSLSEIEVSAVSEAMNQMIGSSATSMATM 176
Query: 134 LAKRT-----IAQISAVLNQCISTTQE---------SSPNLEDFYDIDYLKKNTNRLSNE 179
L + I++I L +S + N+ D ++ ++ +
Sbjct: 177 LGREVNISPPISKIWDDLTSPLSENIDENETIIKVSFKLNIGTLVDSQIMQLLPMEMAKK 236
Query: 180 FVTTINMNMTIENVASSFVLIIPQETL--------------------------------- 206
V + E + + IPQ
Sbjct: 237 IVAIMMGEDIQEEIGEEVMPEIPQVEETQHDLDITGGEELSKTQVEMQREQATYTNESPT 296
Query: 207 ----------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ Q + + + + ++I + K +K++
Sbjct: 297 YHRETPRVQEKPIEVQEAIFQPLQQTSKGEELPRNIDLIMDVPLDISVVLGRTKLNIKEI 356
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L G +I + + NGK + E+ + +N+ +RITD +N +K
Sbjct: 357 LNLGTGSLIELDKLAEEPVEILVNGKPVAFGEVVVIDENFGVRITDIVNNVEKI 410
>gi|208434363|ref|YP_002266029.1| flagellar motor switch protein [Helicobacter pylori G27]
gi|208432292|gb|ACI27163.1| flagellar motor switch protein [Helicobacter pylori G27]
Length = 287
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/282 (14%), Positives = 92/282 (32%), Gaps = 21/282 (7%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S + +++ S + +LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEESFLKLISAPYARVKISAIEKEESLIELLAPVDLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L + + +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTNAEIA 131
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK-----TTLISLSSQNKSE 221
L K ++ + + +E + S ++++ E + + +
Sbjct: 132 KELPKKE-----DYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKTHKEEKEETTQSAT 186
Query: 222 NQSEDLIDPFAR-------KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ + + +N+ RI KK LKDVV++ IG V+
Sbjct: 187 EEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|222823279|ref|YP_002574852.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
gi|222538500|gb|ACM63601.1| flagellar motor switch protein FliY [Campylobacter lari RM2100]
Length = 279
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 16/249 (6%)
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
S V + S+++ + S L+ + E ++G + N K+
Sbjct: 39 DSMTPPLVSATFSVNNEMKIKILA-SAVLMSAIGEWMMGEEEISKNSELNEDEMDAAKEA 97
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
+ I+ S L + +LE+ + + F N+ I ++
Sbjct: 98 IQNIISAFSTTLG-AQKEIPKMEFSLENCEFV-----ADSLELGGFHKLYLYNVKIADLE 151
Query: 195 SSFVL--------IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
L I+ + L + S + + + + I RI
Sbjct: 152 EKISLVFDEKIYKILTKTDLEEIVAPSEDHTQDHKALANVEELRNIGLIMDVRLPIRVRI 211
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
KK LKDV+T+ IG VI + K+I E+ V N+ ++IT+ I
Sbjct: 212 GSKKMLLKDVLTMDIGSVIELDQLANDPLEILIGDKKIAYGEVVIVDGNFGVQITE-IGS 270
Query: 307 DQKSLKNFL 315
++ L+
Sbjct: 271 KKERLEQLR 279
>gi|149182516|ref|ZP_01860989.1| flagellar motor switch protein [Bacillus sp. SG-1]
gi|148849776|gb|EDL63953.1| flagellar motor switch protein [Bacillus sp. SG-1]
Length = 401
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 38/291 (13%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKENFVFSQAS 87
+ + ++ VDIS + + + ++ S
Sbjct: 139 QVSAVQEAMNQ-MMGSAATSMSTVFSKKVDISPPRVDMLYLPEGEGADAIPHDDLLTKIS 197
Query: 88 LSS-----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
S SN L++ L + + ++L
Sbjct: 198 FSLKVGNLIDSNIMQLLPLGFAKQLVDELTNNNDASSTNSDIMEQGASHQEL-------- 249
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
+ + P+ + E + +
Sbjct: 250 -----EPVQRVSPVQPSYSQQDTYRDN--TAQHVPQEKTQSQHFGNN------------- 289
Query: 203 QETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
+ + S N + + S+ + +N+ + ++KD++ L
Sbjct: 290 KNVEQPVQVQPASFTNFEQPSMSKPESKNL-DMLLDIPLNVTVELGRTNRSVKDILELSS 348
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G +I + N + I E+ + +N+ +RITD ++ + K
Sbjct: 349 GSIIELDKLAGEPVDVLVNSRLIAKGEVVVIDENFGVRITDIVSQSDRLKK 399
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/192 (9%), Positives = 60/192 (31%), Gaps = 2/192 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ + S I F
Sbjct: 43 QDTLGEIGNISFGSSATALSTLLNQKVEITTPKVSIQERSRIEEDFPHPYVAIQVQYTEG 102
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+S + + + + +LG + ++ + + + ++
Sbjct: 103 FSGANLLVIKQDDAAIIADLMLGGDGLNPSGDLGEIQVSAVQEAMNQMMGSAATSMSTVF 162
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
S + SP D + + ++ +T I+ ++ + N + S+ + ++P +
Sbjct: 163 SKKVDISPPRVDMLYLPEGEGADAIPHDDLLTKISFSLKVGNLIDSNIMQLLPLGFAKQL 222
Query: 210 TLISLSSQNKSE 221
++ + S
Sbjct: 223 VDELTNNNDASS 234
>gi|126653736|ref|ZP_01725654.1| flagellar motor switch protein [Bacillus sp. B14905]
gi|126589700|gb|EAZ83836.1| flagellar motor switch protein [Bacillus sp. B14905]
Length = 407
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/309 (11%), Positives = 81/309 (26%), Gaps = 38/309 (12%)
Query: 14 HPILLAR-LTGKLGD---KKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A + G G E S++ + + + VDIS +
Sbjct: 121 DAAIIADLMLGGDGLNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTID 180
Query: 67 SGKFS--HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN 124
S + E+ + + S N +NL+ L
Sbjct: 181 LMNISQNEGRENIPEDDLLVKVSFRLRIGNL---IDSNLMQLL----------------- 220
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR--LSNEFVT 182
K ++ + + + +++ + V
Sbjct: 221 ------PLKFSQNIVKSLLGETESIEEPVAATIAPEAPPIAAPPVQQQAPVMPPPAQPVY 274
Query: 183 TI-NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
M P + + N + +
Sbjct: 275 QQPEATMQQPVYQEPQQFAQPARPAQPVNVQQAQFASFDSNVISQSEARNLNMLLDIPLQ 334
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + K ++K+++ L G +I + N + I E+ + +N+ +RIT
Sbjct: 335 VTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVRIT 394
Query: 302 DRINFDQKS 310
D ++ ++
Sbjct: 395 DVLSQAERL 403
Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/227 (10%), Positives = 68/227 (29%), Gaps = 5/227 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLD 57
+RG+++ S + + +G + +
Sbjct: 15 LRGETLEDKNSGTEASSIDETNDIRVEDYLDSFAQDALGEVGNISFGSSATALSALLGQK 74
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASH 116
VDI+ S + + F +V Q + + + + + + +LG
Sbjct: 75 VDITTPSISMINRNKLEEEFPHPYVAVQVEYTIGLTGMNLLVIKQSDAAIIADLMLGGDG 134
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ ++ + + + ++ + + SP D +I + N
Sbjct: 135 LNPKPDLGEIQLSAVQEAMNQMMGSAATSMSTVFNKKVDISPPTIDLMNISQNEGRENIP 194
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSEN 222
++ + ++ + I N + S+ + ++P + L E
Sbjct: 195 EDDLLVKVSFRLRIGNLIDSNLMQLLPLKFSQNIVKSLLGETESIEE 241
>gi|317180687|dbj|BAJ58473.1| flagellar motor switch protein FliY [Helicobacter pylori F32]
Length = 287
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 24/228 (10%)
Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
LV L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKL-N 122
Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222
F I+ ++ I + +E + S ++++ + Q + E
Sbjct: 123 FTTINAEIAKELPKKKDYAKMIVFSFKMEALKESQIILLTTVAFEHQFEK--THQEEKEE 180
Query: 223 QSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+++ + + +N+ RI KK LKDVV++ IG V+
Sbjct: 181 KTKSATEEIKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|207110176|ref|ZP_03244338.1| flagellar motor switch protein FliM [Helicobacter pylori
HPKX_438_CA4C1]
Length = 125
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 2/125 (1%)
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS--QNKSENQSEDLIDPFARK 234
NE + + + I + + P ++ S N +
Sbjct: 1 QNEISIMVVLEIIIGHSRGMMNICYPVISIESILSKMGSRDLMLSETNSKKSRNKELQAL 60
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++V++ + + +LK+++ L +G I + + K+ Y +G G
Sbjct: 61 LSGVSVDMIVFLGAVELSLKEMLDLDVGDTIRLNKIANDEVSVYVHKKKRYLASVGFQGY 120
Query: 295 NYTIR 299
TI+
Sbjct: 121 RKTIQ 125
>gi|158320526|ref|YP_001513033.1| flagellar motor switch protein [Alkaliphilus oremlandii OhILAs]
gi|158140725|gb|ABW19037.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alkaliphilus oremlandii OhILAs]
Length = 385
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/352 (10%), Positives = 94/352 (26%), Gaps = 69/352 (19%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
+ +G + + V I+ Q + + +V
Sbjct: 32 EEKDAIGEIGNISMGTAATTLSTLLGQKVTITTPRVQVLTIEELSKKYPLPYVAVDVKYK 91
Query: 89 SSWSSNFFIGCSNNLVIT----------------LLENLLGASHETIPQLYNRSLSTVEK 132
+ + V L E L A E + Q+ S +++ +
Sbjct: 92 EGLEGTNLLILKEDDVSIITDLMMGGNGEVGAVELTELHLSAIGEAMNQMVGSSATSLSE 151
Query: 133 KLAKRT-------------IAQISAVLNQCISTTQESSPNLEDFYDI--DYLKKNTNRLS 177
+K+ + + + + S + I + ++ +
Sbjct: 152 IFSKKIDISPPDAFLLNLATDNLLELFKDNSQSLVQISFRMVIGELIDSEIMQLMPINFA 211
Query: 178 NEFVTTINMNMTIENVASSFV----------------LIIPQETL--------------- 206
E + + NM + + P+E
Sbjct: 212 KEIIGGLFDNMAKGQEDKTVNDRNNTVPSNVKPAQKDTMHPREMSYDTPNYDHRANFSNE 271
Query: 207 ------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
+ + Q ++ + ++ + + I + + +++
Sbjct: 272 AAATRNEPVNIRPVQFQAFDDDSVKGVMPENISLIQDVPLKITVELGRTVKKISEILEFG 331
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G +I + NG+ + + E+ + +NY IR+TD +N ++ K
Sbjct: 332 PGTIIELDKLVGEPLDILVNGQYVANGEVVVIDENYGIRVTDIVNPAKRLSK 383
>gi|207092364|ref|ZP_03240151.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_AG0C1]
Length = 290
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 14/280 (5%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S + +++ S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISAPYARVKISAIEKEESSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ----------CISTTQES 156
L + +LG + ++ N L ++ +A I+ L I+
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLNFTTINAEIAK 132
Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS 216
++ Y + E + E+ +E T +
Sbjct: 133 ELPKKEDYAKAMVFSFKMEAIKESQIILLTTTAFEHQFEKTHQEEKEEKEETTQSTAEEI 192
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + I + + +N+ RI KK LKDVV++ IG V+
Sbjct: 193 KTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDPLE 251
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 252 ILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 290
>gi|167040317|ref|YP_001663302.1| flagellar motor switch protein [Thermoanaerobacter sp. X514]
gi|256750753|ref|ZP_05491638.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300914401|ref|ZP_07131717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X561]
gi|307724363|ref|YP_003904114.1| MCP methylation inhibitor CheC / FliN fusion protein
[Thermoanaerobacter sp. X513]
gi|166854557|gb|ABY92966.1| CheC, inhibitor of MCP methylation [Thermoanaerobacter sp. X514]
gi|256750336|gb|EEU63355.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter ethanolicus CCSD1]
gi|300889336|gb|EFK84482.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X561]
gi|307581424|gb|ADN54823.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter sp. X513]
Length = 375
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/343 (10%), Positives = 95/343 (27%), Gaps = 56/343 (16%)
Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV- 82
+ + I +G + + V I+ + + F +V
Sbjct: 29 GKELTEEEQDILGEIGNISFGTSATTLYTLLRNKVTITTPKVSVLSWEELKKEFNIPYVG 88
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENL----------------LGASHETIPQLYNRS 126
+ + V+ + + + L A E + Q+ +
Sbjct: 89 VEVEYTEGLKGHNLLILKKEDVLKMTDLMMGGEGKIEEGEITELHLSAIGEAMNQMIGSA 148
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN--RLSNEFVTTI 184
+++ L K + + + + + + K + +E + +
Sbjct: 149 ATSLSTLLNKTINISPPKAFIVDFTASMPTDISFPEGDVVKIAFKMEVGEIIDSEIMQLL 208
Query: 185 NM-------------------------------------NMTIENVASSFVLIIPQETLL 207
N+ + S+ + ++ +
Sbjct: 209 PFDFAKELVHSVLSKNEEKSPQATSQEESSSAIIESDEKNVETGSNISTRDKVTKKKQKV 268
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + S ++ + + I + K +KD++ L G +I
Sbjct: 269 NVSPVVFQSFDEEPTSKSKEDKENLELILDVPLTITVELGKTKKLIKDILELSEGSIIEL 328
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ ANGK I E+ + +N+ +RITD ++ ++
Sbjct: 329 DKLAGEPVDILANGKYIAKGEVVVIDENFGVRITDIVHQSKRI 371
>gi|260544318|ref|ZP_05820139.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038]
gi|260757052|ref|ZP_05869400.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str.
870]
gi|260759577|ref|ZP_05871925.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str.
292]
gi|260762821|ref|ZP_05875153.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str.
86/8/59]
gi|260882862|ref|ZP_05894476.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str.
C68]
gi|261215633|ref|ZP_05929914.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str.
Tulya]
gi|260097589|gb|EEW81463.1| flagellar motor switch protein FliM [Brucella abortus NCTC 8038]
gi|260669895|gb|EEX56835.1| flagellar motor switch protein FliM [Brucella abortus bv. 4 str.
292]
gi|260673242|gb|EEX60063.1| flagellar motor switch protein FliM [Brucella abortus bv. 2 str.
86/8/59]
gi|260677160|gb|EEX63981.1| flagellar motor switch protein FliM [Brucella abortus bv. 6 str.
870]
gi|260872390|gb|EEX79459.1| flagellar motor switch protein FliM [Brucella abortus bv. 9 str.
C68]
gi|260917240|gb|EEX84101.1| flagellar motor switch protein FliM [Brucella abortus bv. 3 str.
Tulya]
Length = 233
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 70/211 (33%), Gaps = 4/211 (1%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
H + L R G GD ++ ++ F + K+ D S
Sbjct: 8 EHNRKNDALAENLLRAAGLSGDD--LKSLAHVFKDASSHFCAR-LKQGSAAAFDAETGSV 64
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+S + F + + + W + ++ LV +++E + GA P +
Sbjct: 65 ESTDKTAFNDIFDKAAIITPLKAERWGCSLYLALDAVLVFSVIEAMFGAQGNLGPVDADH 124
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
VE+K+A ++ L++ +T+ P ID + + T
Sbjct: 125 PFGMVEQKIANLLAGHLAGALDRVFNTSSS-QPLFAPGDCIDTADFDRENFELSRLFTCR 183
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSS 216
+ +T L++P+ T + +
Sbjct: 184 IAVTAAGKTGQMHLLLPRSTQKRCRMQLPPF 214
>gi|332673264|gb|AEE70081.1| flagellar motor switch protein [Helicobacter pylori 83]
Length = 287
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 29/286 (10%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSF--KENFVFSQASLSSWSSNFFIGCSNNLVI 105
+ + + + S +++ S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEK-EVSNSEEAWGSLISAPYARVVISAIEKEESSIELLTPVVLVT 72
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
L + +LG + ++ N L ++ + I+ L QE P L +
Sbjct: 73 ALSDLMLGGEGASKEEMDNDDLDAFKE-MTSNIFGAIATSLKS-----QELLPKLN--FT 124
Query: 166 IDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS 224
+ E I + +E + S ++++ + Q + E ++
Sbjct: 125 TINAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTVAFEHQFEK--THQEEKEEKT 182
Query: 225 EDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + +N+ RI KK LKDVV++ IG V+
Sbjct: 183 KSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 242
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 243 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|254510732|ref|ZP_05122799.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
gi|221534443|gb|EEE37431.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
Length = 376
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/293 (11%), Positives = 85/293 (29%), Gaps = 16/293 (5%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
L +L+ T + +L + + M L + + +
Sbjct: 17 ALARKLSAGQSGADTPRSVLRALRLGLARAAGEG----MGLALSVIGARQAVRAQEDLGE 72
Query: 76 SFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
K+ ++ + V +++ A R + + +
Sbjct: 73 RLKDGWLLLLFTSDQ-GGVAAACLDPGCVSAIVQQQTIAMV-IPDPPAERPFTDTDAAMV 130
Query: 136 KRTIAQISAVLNQCISTTQESSPN--LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
+ + + + + + E + + L +E ++ + +
Sbjct: 131 APLVEDTLGRALKLVESPADMTSLSGFEYASRAEDQRSLILALVDEAYRVFDLTVELAGG 190
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
A + I LL +S Q QS +D A + ++T I+ L
Sbjct: 191 ARQGEVCI----LLPERPLSDGEQATDTAQSGLSLDQ-ASGVMRAE--LNTVISRMSVPL 243
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYS-CELGRVGKNYTIRITDRIN 305
+ L +G ++P + + + + LG+ IRI + ++
Sbjct: 244 TALSNLSVGDILPLQGARVDRVEVLSIDRARATVGRLGQCSGMRAIRINETLS 296
>gi|317012256|gb|ADU82864.1| flagellar motor switch protein FliY [Helicobacter pylori
Lithuania75]
Length = 287
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 27/285 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN---FVFSQASLSSWSSNFFIGCSNNLV 104
+ + + S + S S LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSHSEEAWESLISTPYARVMVSVIEKEESSIELLAPVD--LV 71
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 72 TALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--F 123
Query: 165 DIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------TTLISLSSQ 217
+ E + + +E + S ++++ + ++Q
Sbjct: 124 TTINAEIAKELPKKEDYAKAMVFSFKMEAITESQIILLTTAAFERQFEKTHKEEKEETTQ 183
Query: 218 NKSENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+E + + +N+ RI KK LKDVV++ IG V+
Sbjct: 184 GAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 243
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 244 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|308182587|ref|YP_003926714.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
gi|308064772|gb|ADO06664.1| flagellar motor switch protein FliY [Helicobacter pylori PeCan4]
Length = 287
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 24/228 (10%)
Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
LV L + +LG + ++ N L ++ +A I+ L + + +
Sbjct: 70 LVTALSDLMLGGEGASKEEMNNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTTN 127
Query: 163 FYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN 222
L K ++ + + +E + S ++++ + + Q + E
Sbjct: 128 AEIAKELPKKE-----DYAKMMVFSFKMEALKESQIILLTTAAFERQFEK--THQEEKEE 180
Query: 223 QSEDLIDPFARK--------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
++ + + +N+ RI KK LKDVV++ IG V+
Sbjct: 181 TTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELD 240
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 241 QLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 287
>gi|319649554|ref|ZP_08003710.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
gi|317398716|gb|EFV79398.1| flagellar motor switch protein [Bacillus sp. 2_A_57_CT2]
Length = 432
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/316 (11%), Positives = 79/316 (25%), Gaps = 41/316 (12%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHS 76
A L G++ E ++ +G VDIS +
Sbjct: 134 AELMGEIQLSAVQEAMNQMMG-----SAATSMSTIFGKKVDISPPAIDILDLPQGEGADR 188
Query: 77 FKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ + + S + +N ++ LL G S + L +
Sbjct: 189 VPADDMLIRISFRLKIGSL---IDSN-IMQLLPLEFGKSLVNELLNPGQDLPADSAVSGE 244
Query: 137 RTIAQISAVLNQC---ISTTQESS-----------------PNLEDFYDIDYLKKNTNRL 176
AQ + E P
Sbjct: 245 NQAAQGQPDYQESQLPFDKKPEVQTGGLDKSYTQTGFSGEQPAYSQPVMNQASSPQNYIP 304
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
+ + ++ + + + +D
Sbjct: 305 AQNQAQ----------QSGPQHFGGSYANGVQPNVQPAAFSSFEPYHMQDHETKNLDMLL 354
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + K ++K+++ L G +I + N + I E+ + +N+
Sbjct: 355 DIPLQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNNRLIAQGEVVVIDENF 414
Query: 297 TIRITDRINFDQKSLK 312
+R+TD I+ + K
Sbjct: 415 GVRVTDIISQSDRIKK 430
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/177 (9%), Positives = 55/177 (31%), Gaps = 2/177 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ +G + ++ VDI+ + + F
Sbjct: 41 SHMEQDALGEIGNISFGSSATALSTLLNQKVDITTPAVSVVLRQKLAEEFPHPYVAIQVN 100
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + + + + +LG +L + ++ + + + +
Sbjct: 101 YTEGFFGSNLLVIQQSDAAIIADLMLGGDGTNPAELMGEIQLSAVQEAMNQMMGSAATSM 160
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIP 202
+ + SP D D+ + +++ + I+ + I + + S+ + ++P
Sbjct: 161 STIFGKKVDISPPAIDILDLPQGEGADRVPADDMLIRISFRLKIGSLIDSNIMQLLP 217
>gi|159043958|ref|YP_001532752.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12]
gi|157911718|gb|ABV93151.1| hypothetical protein Dshi_1409 [Dinoroseobacter shibae DFL 12]
Length = 349
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/247 (8%), Positives = 71/247 (28%), Gaps = 9/247 (3%)
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S + + + + + + + F S+ + L+E +
Sbjct: 61 SVQVVDTDGVAGLAEQMADVALLIPCNAPD-GAEGFAALSSGGMTGLVEKTTTGRI-SPG 118
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQ--CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
+ R S++++ L + I + + ++ + + + +
Sbjct: 119 EPEPRDASSIDQLLCRGFIERFFEAWGELLAGTSHEAWLAGYAPTDGMMQPDVLSVSAPD 178
Query: 179 EFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
+ + +F + +P + L + + + + +
Sbjct: 179 IPYRLYLITAQFDGLREVAFSVALPVS---RPRPADLVETGDAARSTGEWAKDWRAAVLE 235
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELGRVGKNY 296
+D + + +L +V G + + L NG + + LG+
Sbjct: 236 SPAELDAVLCKLELSLDEVRRWAPGDRVSIPASALSSVSLGRRNGPSVATARLGQARGVR 295
Query: 297 TIRITDR 303
+R+ +
Sbjct: 296 ALRLNEI 302
>gi|167630304|ref|YP_001680803.1| flagellar motor switch protein flin, putative [Heliobacterium
modesticaldum Ice1]
gi|167593044|gb|ABZ84792.1| flagellar motor switch protein flin, putative [Heliobacterium
modesticaldum Ice1]
Length = 375
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 35/76 (46%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + T++D++ L G VI + NGK I E+ + +
Sbjct: 296 IMDVPLQVTVELGKSRKTIRDILDLGPGSVIELDKLAGEPVDILVNGKLIAKGEVVVIDE 355
Query: 295 NYTIRITDRINFDQKS 310
N+ +RITD ++ ++
Sbjct: 356 NFGVRITDIVSPIERI 371
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 4/166 (2%)
Query: 54 MDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLL 112
M VDI+ + + + FV + N + + V +++ ++
Sbjct: 1 MGKKVDITTPRVYVTTKAALQKDYPSPFVVVDVTYTAGLEGNNVLIIRESDVAIIVDLMM 60
Query: 113 GASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
G + P N + + + + + + + + SP + ID+ +
Sbjct: 61 GGDGMSPPAELNEIHFSAISEAMNQMMGSAATSMATMLQKKIDISPPM--LNTIDFASEK 118
Query: 173 TNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQ 217
R + V ++ M IE V S + I P + +
Sbjct: 119 LPRPDVDPVIKVSFRMVIEGLVDSELMQIYPIPFAKQLVSGLMGDM 164
>gi|313639062|gb|EFS04049.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
Length = 502
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/315 (10%), Positives = 95/315 (30%), Gaps = 26/315 (8%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
L RL G +K +++ ++ + + + ++ V + + +
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248
Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + S+ S N + + + ++ + L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307
Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ ++L + + + +++ + T + SP +E D + +
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
+ + + + P L+ + N + ++ +
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKANTQEMEPEMPLPIEEKETLSE 427
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ V ++ K L+ ++ VI +L NG I L
Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLVLMLNGVIIGKGILV 487
Query: 291 RVGKNYTIRITDRIN 305
RV ++ I++T+ +
Sbjct: 488 RVDDHFGIQMTELVR 502
>gi|266623347|ref|ZP_06116282.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
gi|288864885|gb|EFC97183.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
Length = 354
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/326 (13%), Positives = 87/326 (26%), Gaps = 56/326 (17%)
Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSN 94
L +L+ K + + D++IS + + E VF S + N
Sbjct: 20 EELIHLHAKAAGESLSSILKADIEISSPEITEITVKEVEYGILEPAVFVKSCLTSGVAGN 79
Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTT 153
+ + L L+G P ++ + +L + + + + + T
Sbjct: 80 TVMILRQRDMQAFLNELMGIDDLPDPDFEFDEVAMSAAAELMNQMVHASVEAMAEYLGNT 139
Query: 154 QE-SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT-- 209
E S L L I+ + I++ V S F+ I
Sbjct: 140 MESSDCQLILSDGRQNLSPAIGEAPESKTIVIHYRVKIKDMVESEFMECISITAADSIYQ 199
Query: 210 --------------------------------------TLISLSSQNKSENQS------- 224
S S
Sbjct: 200 EIGARREAEKRAEAEAKAMEESLFVKPVQQGAAPAAAGRESLQSGMESRTANSVTADTGH 259
Query: 225 --EDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ +N+ I + LKDV+ G V+ + +
Sbjct: 260 AVYQASPSINGNLGLIMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIV 319
Query: 280 NGKEIYSCELGRVGKNYTIRITDRIN 305
NG+ I E+ + N+ +RI++ +N
Sbjct: 320 NGQLIARGEVVVIDDNFGVRISEIVN 345
>gi|210134612|ref|YP_002301051.1| flagellar motor switch protein FliY [Helicobacter pylori P12]
gi|210132580|gb|ACJ07571.1| FliY protein [Helicobacter pylori P12]
Length = 287
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 23/283 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + + S + +++ + + LV
Sbjct: 14 STLEGLVGKALSVGLEKEISSSDESFLKLISAPYARVKISAIEKEEGSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK---------TTLISLSS 216
+ E + + +E + S ++++ E + + +
Sbjct: 126 INAEIAKEFPKKEDYAKAMVFSFKMEAIKESQIILLTTEAFERQFEKMHKEEKEETTEGA 185
Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ + L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 186 TEEVKAHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|109947666|ref|YP_664894.1| flagellar motor switch protein FliY [Helicobacter acinonychis str.
Sheeba]
gi|109714887|emb|CAJ99895.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
Length = 283
Score = 86.6 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 28/230 (12%)
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
LV TL + +LG + ++ N L ++ +A I+ L QE P L
Sbjct: 67 GLVTTLSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN 120
Query: 162 DFYDIDYLKKNTNRLSNE---FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
+ + E + M + +L+ T ++
Sbjct: 121 --FTTTNAEIAKELPKKEDYAKAVVFSFKMEALKESQMILLV----TTDFINQFETKKEH 174
Query: 219 KSENQSEDLIDPFARK------------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
E D + +N+ RI KK LKDVV++ IG V+
Sbjct: 175 NEEGTKVVREDKIQDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 234
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 235 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 283
>gi|313634377|gb|EFS00972.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
Length = 502
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
L RL G +K +++ ++ + + + ++ V + + +
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248
Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + S+ S N + + + ++ + L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307
Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ ++L + + + +++ + T + SP +E D + +
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
+ + + + P L+ + N + ++ +
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSE 427
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ V ++ K L+ ++ VI L NG I L
Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487
Query: 291 RVGKNYTIRITDRIN 305
RV ++ I++T+ +
Sbjct: 488 RVDDHFGIQMTELVR 502
>gi|315301945|ref|ZP_07872946.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
gi|313629687|gb|EFR97819.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
Length = 502
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
L RL G +K +++ ++ + + + ++ V + + +
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248
Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + S+ S N + + + ++ + L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307
Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ ++L + + + +++ + T + SP +E D + +
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
+ + + + P L+ + N + ++ +
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADTQEMKPEMPLPIEEKETLSE 427
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ V ++ K L+ ++ VI L NG I L
Sbjct: 428 MEAILEAIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487
Query: 291 RVGKNYTIRITDRIN 305
RV ++ I++T+ +
Sbjct: 488 RVNDHFGIQMTELVR 502
>gi|261419431|ref|YP_003253113.1| flagellar motor switch protein [Geobacillus sp. Y412MC61]
gi|319766246|ref|YP_004131747.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC52]
gi|261375888|gb|ACX78631.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC61]
gi|317111112|gb|ADU93604.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y412MC52]
Length = 393
Score = 86.6 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/313 (12%), Positives = 84/313 (26%), Gaps = 44/313 (14%)
Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A L G D E S++ + + VDIS +
Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168
Query: 67 SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + S S+ + L+ LLG+ E
Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
S+ + + P E Y + N +E
Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ + + + + + + +
Sbjct: 265 AASRSTDEPPAGRADKERD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++++++ L G +I + N K I E+ + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378
Query: 300 ITDRINFDQKSLK 312
ITD I+ + K
Sbjct: 379 ITDIISQSDRLTK 391
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + + + F +
Sbjct: 37 QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEG 96
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + +LG + ++ + + + ++
Sbjct: 97 LLGTNLLVIKQQDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D+ K +F+ ++ + I + SS + ++P + +
Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216
Query: 210 TLISLSSQNKSENQSEDLIDP 230
L S + +E +
Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237
>gi|15645644|ref|NP_207820.1| flagellar motor switch protein FliY [Helicobacter pylori 26695]
gi|2314175|gb|AAD08074.1| fliY protein (fliY) [Helicobacter pylori 26695]
Length = 287
Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/283 (16%), Positives = 94/283 (33%), Gaps = 23/283 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S + +++ S+ + LV +
Sbjct: 14 STLEGLVGKAPSVGLEKEISSSDESFLKLISTPYARVVISAIEKEESSIELLAPVVLVTS 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLL---------KTTLISLSS 216
+ E + + +E + S ++++ + +
Sbjct: 126 INAEIAKELPKKEDYAKAMVFSFKMEAIKESQIILLTTAAFEGQFEKTHKEEKEETTEGV 185
Query: 217 QNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ + L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 186 AEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 245
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 246 PLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|89070387|ref|ZP_01157694.1| possible flagellar switch protein FliM [Oceanicola granulosus
HTCC2516]
gi|89044034|gb|EAR50209.1| possible flagellar switch protein FliM [Oceanicola granulosus
HTCC2516]
Length = 381
Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 32/293 (10%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
LAR G+ ++ + + + V + S + ++
Sbjct: 2 LARKARVGGEAAASGVVTPARALRLA--FARAVERVAGAQVAVVAVSEAALVLDEVVARL 59
Query: 78 K-ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
++ V + A S L L+E + P R +S + L +
Sbjct: 60 GTDDLVLALAGAEGVSG--LAALDPELRSALVECQTTGAVSPEPAPE-RPVSVADAALTR 116
Query: 137 RTIAQISAVLNQC--------ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+ L ++ L+ + + + + +++
Sbjct: 117 PVVDAFLEELLAAAAPTALAGWGEGVATAGRLDGARGA----GLSLAEAGYRLVALTVDL 172
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
++ +P + + D FAR + ++
Sbjct: 173 GAGTREGRLLVALPA-------------REAPAPTASDWSGQFARAVQAAPAELRAVLHR 219
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300
+ L+ L GQV+P L A + LG+ IR+
Sbjct: 220 FELPLERAEALAPGQVLPLEGVTVASVRLEGAERALVGHARLGQSAGLKAIRL 272
>gi|289433978|ref|YP_003463850.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170222|emb|CBH26762.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 502
Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/315 (10%), Positives = 94/315 (29%), Gaps = 26/315 (8%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSG 68
L RL G +K +++ ++ + + + ++ V + + +
Sbjct: 189 ELAKRLLGDTEPEKEEINLTAEELDVFLEVCNIGIGSASTVLSKLLNRKVSLKIPTARVI 248
Query: 69 KFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ + + + S+ S N + + + ++ + L
Sbjct: 249 DSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAALIMADLMMMGDGKVQEDAELTEL 307
Query: 128 S-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ ++L + + + +++ + T + SP +E D + +
Sbjct: 308 EVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFCNFGDTMIQKNIAEGKTVEVIFP 367
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN---------------QSEDLIDP 230
+ + + + P L+ + N + ++ +
Sbjct: 368 LEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAQEVANKADMQEIEPEMPLPIEEKETLSE 427
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
+ V ++ K L+ ++ VI L NG I L
Sbjct: 428 MEAILEDIPVKLEVVFGTAKVKLETFISWCEKDVIILKESMNEPLALMLNGVIIGKGILV 487
Query: 291 RVGKNYTIRITDRIN 305
RV ++ I++T+ +
Sbjct: 488 RVDDHFGIQMTELVR 502
>gi|56419766|ref|YP_147084.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
gi|56379608|dbj|BAD75516.1| flagellar motor switch protein [Geobacillus kaustophilus HTA426]
Length = 393
Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/313 (11%), Positives = 85/313 (27%), Gaps = 44/313 (14%)
Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A L G D E S++ + + VDIS +
Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168
Query: 67 SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + S S+ + L+ LLG+ E
Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
S+ + + P E Y + N +E
Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ + + + + + + + +
Sbjct: 265 AASRSTDEPSAGRADKDRD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++++++ L G +I + N K I E+ + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378
Query: 300 ITDRINFDQKSLK 312
ITD I+ + +
Sbjct: 379 ITDIISQSDRLTR 391
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + + + F +
Sbjct: 37 QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSMIERTSVADEFPQPYVAIQVNYTEG 96
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + +LG + ++ + + + ++
Sbjct: 97 LLGTNLLVIKQKDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D+ K +F+ ++ + I + SS + ++P + +
Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216
Query: 210 TLISLSSQNKSENQSEDLIDP 230
L S + +E +
Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237
>gi|258516873|ref|YP_003193095.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
DSM 771]
gi|257780578|gb|ACV64472.1| CheC, inhibitor of MCP methylation [Desulfotomaculum acetoxidans
DSM 771]
Length = 331
Score = 86.2 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 82/293 (27%), Gaps = 19/293 (6%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+G + + ++ V I K + SF ++ S
Sbjct: 31 SHHQLDTIGEVGNISMGTAATTLSQILNQRVTIGNPRVIVCKQEEVFKSFATPYLLVYVS 90
Query: 88 L-SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAV 145
+ + + N V T+ +LG P + L + ++ + I +
Sbjct: 91 FKEGLTGFNVLIITENEVATIANLMLGGDGNIPPVVELSELEISAAQEAMNQMIGSVCTA 150
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV--ASSFVLIIPQ 203
+ + +P T + + V + + I N+ + ++
Sbjct: 151 MTDMFGIPIDITPPTITMVHDIKNASLTPLPTEQPVVVVRFDTFISNILKTTIMQILSVD 210
Query: 204 ETLLKTTLISLSS--QNKSENQSEDLIDPFARKTYQL------------NVNIDTRINLK 249
+ + + +K + + + VN+ +
Sbjct: 211 AAQEEANYLLQKAGYMDKEAEIVANNANSDNDQVAVASKLPNLTAALSLPVNLTVVLGKT 270
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+T++++ L+IG+ + C + A + +L + I
Sbjct: 271 LSTVEELARLEIGKKLTLPLSA-ECVEIYAGDTLVGKGKLIDQKGKMQVEINQ 322
>gi|225620314|ref|YP_002721571.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
gi|225215133|gb|ACN83867.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
Length = 360
Score = 86.2 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +N+ + T++D++ L G +I L NGK I E+ + +
Sbjct: 280 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 339
Query: 295 NYTIRITDRINFDQKSLK 312
N+ +R+TD IN +
Sbjct: 340 NFGVRVTDIINPMDRLTN 357
>gi|268678939|ref|YP_003303370.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
DSM 6946]
gi|268616970|gb|ACZ11335.1| flagellar motor switch protein FliN [Sulfurospirillum deleyianum
DSM 6946]
Length = 286
Score = 85.8 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/279 (12%), Positives = 84/279 (30%), Gaps = 17/279 (6%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
+ + + +S + + + + ++ +
Sbjct: 14 STIEGLTGIAPQVELNKEEST--ESKLRLSPPLARLDVSVGGDMHGRMRVTVATSIATAI 71
Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
+ +LG ++ L ++ + ++ S L + ++E ID
Sbjct: 72 GDMMLGGEGLEKEEMDAEDLDATKE-IVSNILSSFSRSLASQ-KNMPKLEFDIESVEYID 129
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
+ E + N+ + + + +F + L++ + + +
Sbjct: 130 ANSEIEF-RGYEKLFIYNLAIHMSHDTIAFAISSELTPLVEDMPRMDTPKESIPESALIE 188
Query: 228 IDPF-----------ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + I RI KK LKDV+++ IG VI
Sbjct: 189 PKKVVPSMSPEEISNIELIKDVRLPIRVRIGSKKMLLKDVLSMDIGSVIELDQLANDPLE 248
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFL 315
+ K I E+ V N+ ++I + I ++ L+
Sbjct: 249 ILVGDKVIAMGEVVIVDGNFGVQIGE-IGTKRERLEKLR 286
>gi|296126964|ref|YP_003634216.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
12563]
gi|296018780|gb|ADG72017.1| flagellar motor switch protein FliN [Brachyspira murdochii DSM
12563]
Length = 359
Score = 85.8 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +N+ + T++D++ L G +I L NGK I E+ + +
Sbjct: 279 LMDVTMNMTVELGRATMTIRDILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDE 338
Query: 295 NYTIRITDRINFDQKSLK 312
N+ +R+TD IN +
Sbjct: 339 NFGVRVTDIINPMDRLTN 356
>gi|255262288|ref|ZP_05341630.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255104623|gb|EET47297.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 326
Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/269 (9%), Positives = 79/269 (29%), Gaps = 25/269 (9%)
Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
+ + + + + + V + + E + + + + C
Sbjct: 28 DVLARAMRRAADFVVGMPVLLKGGEASEVSLVELAEQLNEQD-LTMMLIGRDGARAIMTC 86
Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN---------QCI 150
+V L+E T R ++ + L + Q+ ++ +
Sbjct: 87 DGPMVSALIEMSTIGHVTT-ANSAARRMTRTDVALITPFLGQVLVEVSGGDADVPVTSLM 145
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
S E + L+ + + V +++ + + +L +P+
Sbjct: 146 SGYDEMTRVLDVCTVELIMPQVQ-----YHVYDLSLELGQGSKTGRVMLCLPKRASQDEK 200
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ +++ +++ L +D ++ L +V +G +I
Sbjct: 201 I--------AQDTAKNWKASVEATVLDLPSQLDAVLHTVSMPLSEVRAFAVGDMIKMAAS 252
Query: 271 EKTCAILS-ANGKEIYSCELGRVGKNYTI 298
+ + + I + LG+V +
Sbjct: 253 SLKTVQVRGLDSQTITTARLGQVHGTRAL 281
>gi|297530594|ref|YP_003671869.1| chemotaxis protein CheC [Geobacillus sp. C56-T3]
gi|297253846|gb|ADI27292.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. C56-T3]
Length = 393
Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 37/313 (11%), Positives = 84/313 (26%), Gaps = 44/313 (14%)
Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A L G D E S++ + + VDIS +
Sbjct: 109 DAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVFGKRVDISPPTLH 168
Query: 67 SGKFSHI--IHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + S S+ + L+ LLG+ E
Sbjct: 169 LLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKELVAQLLGSPLEEP 228
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
S+ + + P E Y + N +E
Sbjct: 229 GAAEVNLKSSADAR------------------------PFSEPQPVPTYAQANGGAAVSE 264
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ + + + + + + +
Sbjct: 265 AASRSTDEPPAGRADKERD-----GATARHIQTADFVEFDAPPLAATEARNL-ELLFDVP 318
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++++++ L G +I + N K I E+ + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSTGSIIELDKLAGEPVDVFVNNKLIAKGEVVVIDENFGVR 378
Query: 300 ITDRINFDQKSLK 312
ITD I+ + +
Sbjct: 379 ITDIISQSDRLTR 391
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 2/201 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + + + F +
Sbjct: 37 QDALGEIGNISFGSSATALSMLLNQKVEITTPSVSIIERTSVADEFPQPYVAIQVNYTEG 96
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + +LG + ++ + + + ++
Sbjct: 97 LLGTNLLVIKQQDAAIIADLMLGGDGTAADGPLGEIQLSAVQEAMNQMMGSAATSMSTVF 156
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D+ K +F+ ++ + I + SS + ++P + +
Sbjct: 157 GKRVDISPPTLHLLDLAEGKGMEYLPDEDFLIKVSFRLKIGELIDSSIMQLLPVDFAKEL 216
Query: 210 TLISLSSQNKSENQSEDLIDP 230
L S + +E +
Sbjct: 217 VAQLLGSPLEEPGAAEVNLKS 237
>gi|307720639|ref|YP_003891779.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
gi|306978732|gb|ADN08767.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
Length = 294
Score = 85.8 bits (211), Expect = 8e-15, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 92/285 (32%), Gaps = 26/285 (9%)
Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITL 107
+ + + Q II + V + +S ++ I NL +L
Sbjct: 15 TIEALIGTAPSLELKEEQELS---IISNIVPPIVLVKIKVSGDVDADAMIALPPNLAASL 71
Query: 108 LENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDID 167
+ ++G + L ++ + IS L S ++E+ +
Sbjct: 72 SDMMMGEEASDREDVSEDDLDAAKE-IVSNIFGAISNTL-SAQKELPVLSFSIENIELVG 129
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSF-------VLIIPQET------LLKTTLISL 214
+ + + N+ + F ++ P +T + + +
Sbjct: 130 DDDEVSLEAFSRMYV-YKFNLESVHSLLMFIIDEKLKNVLFPSDTSSESAEIEENRSTAA 188
Query: 215 SSQNKSENQSED---LIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+S + S N ED + + + + RI K+ LKDV+ + IG VI
Sbjct: 189 ASSHISSNCEEDITLSNEEMKNIALIMDVKLPVRVRIGKKRMLLKDVLNMDIGSVIELNQ 248
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ + + E+ V N+ I++T I ++ L
Sbjct: 249 LANDPLEILVDNHVVAQGEVVIVDGNFGIQVT-TIGTKKERLTQL 292
>gi|317013859|gb|ADU81295.1| flagellar motor switch protein FliY [Helicobacter pylori
Gambia94/24]
Length = 285
Score = 85.5 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 20/232 (8%)
Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI------ 150
+ +LV L + +LG + ++ N L ++ +A I+ L
Sbjct: 62 LLAPADLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLN 120
Query: 151 ------STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE 204
+E + + + K ++ V E F +E
Sbjct: 121 FTTTNAEIAKELPKKEDYAKAMVFSFKMEAIKESQIVLLTT-----EAFEGQFEKTHKEE 175
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
T + ++ + I + + +N+ RI KK LKDVV++ IG V
Sbjct: 176 KEETTKSATEETKTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSV 234
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 235 VELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285
>gi|302874573|ref|YP_003843206.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulovorans 743B]
gi|307690816|ref|ZP_07633262.1| flagellar motor switch protein [Clostridium cellulovorans 743B]
gi|302577430|gb|ADL51442.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulovorans 743B]
Length = 400
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q ++ L + + +NI + + ++KD+++L G +I
Sbjct: 294 PVEVSKATFQPLRTADTKSLPNNI-DLIMDVPLNISVVLGKTRKSIKDILSLNNGSLIEL 352
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NGK+I E+ V +N+ +RIT ++ + +
Sbjct: 353 DKLAEEPVEILVNGKKIAYGEVVVVDENFGVRITSIVSSEDRI 395
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 58/194 (29%), Gaps = 2/194 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + + ++ V+I+ + + F +S
Sbjct: 36 KDLLGEIGNISMGSASTALSQIINQPVNITTPVVTVTTLEKLKNEFTIPNIALDIKYISG 95
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + ++G + + + ++ + I + + +
Sbjct: 96 IKGENLLVMKTIDASVIANLMMGGDGKVENIELSELEVSAVQEAMNQMIGSAATSMATML 155
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
S SP ++ + E + + MTI + V S+ + I P ET
Sbjct: 156 SREINISPPDSKIWNDSNDSLSETIDEKEDIIKVAFKMTIGDLVDSTIMQIYPLETSKNI 215
Query: 210 TLISLSSQNKSENQ 223
I + + +Q
Sbjct: 216 CSIMMGEADDDIDQ 229
>gi|308068665|ref|YP_003870270.1| flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
gi|305857944|gb|ADM69732.1| Flagellar motor switch protein fliN [Paenibacillus polymyxa E681]
Length = 436
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/302 (10%), Positives = 74/302 (24%), Gaps = 25/302 (8%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHSFKENFVFSQASL 88
I + ++ + V+IS + S + S
Sbjct: 138 ISAVQEAMNQ-MMGSSATSMSTMFNRFVNISPPGIDILDPMHGDGVSSLPDEETLITVSF 196
Query: 89 SSWSS-----NFFIGCSNNLVITLLENLL-GASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
N ++ L+ G E PQ + ++ A + +
Sbjct: 197 RLLIGDLIDSTLMQLLPVNFAKKMVSILMNGGEDEEQPQASAQQVAATAAPEASQQASVP 256
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
++ +D + +P
Sbjct: 257 QQPPAPAYQQPPAAAQAPQDAGYGQQPP----MYPQDPGYGQQGAPGYGTPGYGMPAGVP 312
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFA------------RKTYQLNVNIDTRINLKK 250
+ T + ++ N + + + + +
Sbjct: 313 PQAPYGTPHHYGAVPGRNVNVQPVQFSNLQSGAFAQVDENNLNLLMDIPLRVTVELGRTQ 372
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+KD++ L G +I + N K I E+ + +N+ +R+TD ++ +
Sbjct: 373 KQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIVSQWDRI 432
Query: 311 LK 312
K
Sbjct: 433 QK 434
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/200 (10%), Positives = 60/200 (30%), Gaps = 2/200 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + VDI+ S +F + +
Sbjct: 41 QDALGEIGNITFGSAATALSTLLGQKVDITTPKVSIITRSEFETAFPKPHVAVHVNYVDG 100
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + + N + ++ + + + ++
Sbjct: 101 FEGINSLVIKKRDAQVIADLMLGGEGNPVDEELNEIHISAVQEAMNQMMGSSATSMSTMF 160
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D D + ++ E + T++ + I + + S+ + ++P K
Sbjct: 161 NRFVNISPPGIDILDPMHGDGVSSLPDEETLITVSFRLLIGDLIDSTLMQLLPVNFAKKM 220
Query: 210 TLISLSSQNKSENQSEDLID 229
I ++ E
Sbjct: 221 VSILMNGGEDEEQPQASAQQ 240
>gi|206563882|ref|YP_002234645.1| type III secretion system protein [Burkholderia cenocepacia J2315]
gi|18092661|gb|AAK50139.1| BcscQ [Burkholderia cenocepacia]
gi|198039922|emb|CAR55899.1| type III secretion system protein [Burkholderia cenocepacia J2315]
Length = 366
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 75/295 (25%), Gaps = 27/295 (9%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ P+ G D I ++L L + + V +
Sbjct: 83 IDPVAETEWLGDAADPAVPAVIRAALLADLCAPLAAVLQAATRQRVALLPPP-------D 135
Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
++ + L W + + + + A+ + +
Sbjct: 136 GAPAWDAAPAALRFELRRADAAWRCHGALLFDAPDALAV----FFATAPAALADARATYA 191
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
++ L +E + + RL I
Sbjct: 192 SLPVPLVFEIGRTELTTAELA-DVVGGDIIAIERWQAHEQNLLCVARLPAAPAWEITGRP 250
Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + + +P L T + + + + R L V++ +
Sbjct: 251 SGNRLTVERIREMP---LEPTRTDSAPPTTHDAPPGDAP------RSLDGLAVDLRFELP 301
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ L+ G VI L ANG I + L VG+ +R+
Sbjct: 302 PTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 356
>gi|89895727|ref|YP_519214.1| hypothetical protein DSY2981 [Desulfitobacterium hafniense Y51]
gi|89335175|dbj|BAE84770.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 421
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 39/107 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
T + + + + + + + K T+K+++ L G VI
Sbjct: 312 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 371
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ NGK + CE+ + + + IRITD + ++ K
Sbjct: 372 DRLAGEPVDMIVNGKLVAKCEVVVINETFGIRITDIVQPSERMTKAI 418
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 7/217 (3%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
P + D + + + + + V+I+ I
Sbjct: 22 DPPAQKEPAVEFSDMER--DAIGEIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQI 79
Query: 74 IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ V + + S +++ ++G + E P + +
Sbjct: 80 RKDYPIPSVIVDVRYKAGIEGSNLLILSQRDGAVIVDLMMGGTGENPPTELSELGISGIS 139
Query: 133 KLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
+ + + + ++ ++ + +P L D D S+E + I+ M
Sbjct: 140 EAMNQMMGSAATSMSTMFNSVVDITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRMV 199
Query: 190 IENVASSFVL-IIPQETLLKTTLISLSSQNKSENQSE 225
+E+V S ++ +IP L + S ++ E
Sbjct: 200 VEDVIDSILVQVIPIHVAKGMVGKLLGTMGGSGSKPE 236
>gi|89098631|ref|ZP_01171513.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
gi|89086593|gb|EAR65712.1| flagellar motor switch protein [Bacillus sp. NRRL B-14911]
Length = 408
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/307 (12%), Positives = 82/307 (26%), Gaps = 36/307 (11%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF--SHIIHS 76
A L G++ E ++ +G VDIS S
Sbjct: 128 ADLLGEIQLSAVQEAMNQMMG-----SAATSMSTIFSKRVDISPPSIDFLDVQQGEGTDR 182
Query: 77 FKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLL--GASHETIPQLYNRS-LS 128
++ + + S S+ L+E L+ GA E ++
Sbjct: 183 IPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRLVEELMNPGAQAENPAADLSKPDPV 242
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
++ + A+ + + +
Sbjct: 243 QAQEPAFHQPPAEPVPDMAAAPPGYGQGTAQYSGMETQTQRPAAQAAPQ----------- 291
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
L + N Q ++ + + + +
Sbjct: 292 ---------HLGAHYPGGQPPQVQPAVFSNFEPQQLQESETKNLNMLLDIPLQVTVELGR 342
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
K ++KD++ L G +I + N + I E+ + +N+ +R+TD I+
Sbjct: 343 TKRSVKDILELSAGSIIELDKLAGEPVDILVNSRLIAKGEVVVIEENFGVRVTDIISQSD 402
Query: 309 KSLKNFL 315
+ +KN
Sbjct: 403 R-IKNLR 408
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/200 (11%), Positives = 68/200 (34%), Gaps = 2/200 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ + + F +
Sbjct: 39 QDALGEIGNISFGSSATALSTLLNQKVEITTPTVSVILKRKLQEEFPHPYVAIQVSYTEG 98
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+S + + + + + +LG L + ++ + + + ++
Sbjct: 99 FSGSNLLVIKQSDAAIIADLMLGGDGLNPADLLGEIQLSAVQEAMNQMMGSAATSMSTIF 158
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
S + SP DF D+ + ++ + ++ + I + + SS + ++P E +
Sbjct: 159 SKRVDISPPSIDFLDVQQGEGTDRIPDDDMLVKVSFRLKIGDLIDSSIMQVVPLEFAKRL 218
Query: 210 TLISLSSQNKSENQSEDLID 229
++ ++EN + DL
Sbjct: 219 VEELMNPGAQAENPAADLSK 238
>gi|326791529|ref|YP_004309350.1| chemotaxis protein CheC [Clostridium lentocellum DSM 5427]
gi|326542293|gb|ADZ84152.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium lentocellum DSM 5427]
Length = 403
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/366 (11%), Positives = 105/366 (28%), Gaps = 77/366 (21%)
Query: 22 TGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-KEN 80
+G + +G + ++ V I+ ++ + I++ +
Sbjct: 38 SGTVTLSPEETDALGEIGNICMGTAATTLFTLLNHKVLITTPKVEALTWEQFINTITDDL 97
Query: 81 FVFSQASLSSWSSNFFIGC---SNNLVITLL-------------ENLLGASHETIPQLYN 124
S + + + ++ L+ + L A E++ Q+
Sbjct: 98 TAVSVDYTEGFRGSNLMILKDHDVKIIADLMMGGTGAYAEGPVTDLHLSAIAESMNQMIG 157
Query: 125 RSLSTVEKKLAKRT------IAQISAVLNQCIST---TQESSPNLEDFYDIDYLKKNTNR 175
S +++ + K+ ++ A L + S L+ +I +
Sbjct: 158 SSSTSMAQIFNKKIDISPPQALKMEANLEDIFGPKGDIVKISFRLQIEENIIDSELMQVL 217
Query: 176 LSNEFVTTINMNMTIE-----------------NVASSF-------VLIIPQETLLKTTL 211
I + E V+SS ++ P+ L
Sbjct: 218 PIQFAKELIAGLLNQEQIATEEVAAPQPIENKSEVSSSVVQTATQPTMVQPESKLPPIME 277
Query: 212 ISLSSQNKS---------------------------ENQSEDLIDPFARKTYQLNVNIDT 244
+ + + +N+ + +++ +
Sbjct: 278 QPYMTNDPNYYGETYHKSVNNIRADVDVQTPQFQSFDNRPKVYPKENMDLLMDVSLEVSV 337
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ +K+++ G +I + NGK + + E+ + +N+ IRITD I
Sbjct: 338 ELGRTSRKIKEILEFGPGSIIELNRLVGEPVDVLVNGKFVATGEVVVIDENFGIRITDII 397
Query: 305 NFDQKS 310
N + +
Sbjct: 398 NPEDRI 403
>gi|303240275|ref|ZP_07326794.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetivibrio cellulolyticus CD2]
gi|302592185|gb|EFL61914.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetivibrio cellulolyticus CD2]
Length = 410
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 78/288 (27%), Gaps = 26/288 (9%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN------FVFSQ 85
S++G + + D VDIS F + + F
Sbjct: 137 LSAIGEAMNQMIGSAATSMSSMFDKRVDISPPRAFCMTFDNQQEDVFQPEDRLVKIAFKM 196
Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
S +L++NL+ A+ E + N + S K
Sbjct: 197 VIGELVDSEIMQLIPLKFAKSLVDNLINANSEAVAPPQNNNSSASSVK------------ 244
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ-- 203
N P + ++ + + + + F PQ
Sbjct: 245 -NTPQVQPPPQQPQQQYTEQYPQQQQYPQQQYQQQYPPQQYPPMQQGMGQPFYGQAPQEQ 303
Query: 204 -ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ Q + + + + + +KD++ G
Sbjct: 304 GRFREPINVQPAQFQAFDDGMISFERKNI-GLIMDVPLQVTVELGRTNRLIKDILEFGPG 362
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+I + NGK I E+ + +++ +RITD I+ ++
Sbjct: 363 SIIELDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIIHPSKRL 410
>gi|284041534|ref|YP_003391874.1| chemotaxis protein CheC [Conexibacter woesei DSM 14684]
gi|283945755|gb|ADB48499.1| CheC, inhibitor of MCP methylation [Conexibacter woesei DSM 14684]
Length = 301
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/289 (11%), Positives = 75/289 (25%), Gaps = 21/289 (7%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDV---DISYTSCQSGKFSHIIHSFKENFV-FSQASL 88
LG + + K+ V D++ + + F + + V S A +
Sbjct: 5 DALMRLGASTAEAIAKVLDSLCPDQVERGDVAVLNPDTNPF----ATLEAPAVAVSVAYV 60
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + +++G + P+ LS +E Q+ A
Sbjct: 61 DGVTGANVFVMTAKGARRIAASMMG---QPPPEDDASELSVLELSAVAEAANQMMAAAAA 117
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV---TTINMNMTIEN------VASSFVL 199
I + + + + E + E V ++FV+
Sbjct: 118 AIGVVLGQDVEIAPPETRLFNSASEAIDAYEMAPHGARATFRVCDEPCRLVQLVPNAFVV 177
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ + + + V + + + L +
Sbjct: 178 RMTRALDEMGVEHVSGGASDGGEGDVHEQVALDDALRDIRVRVWAELGRTRVPLGQAPDM 237
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELG-RVGKNYTIRITDRINFD 307
G V+ + L NG S L + +R+ + D
Sbjct: 238 PAGSVLELDRKADDPVDLYVNGLRFASGTLVLTDDGEWALRLAEVAGRD 286
>gi|147678395|ref|YP_001212610.1| flagellar motor switch protein [Pelotomaculum thermopropionicum SI]
gi|146274492|dbj|BAF60241.1| flagellum motor switch protein [Pelotomaculum thermopropionicum SI]
Length = 422
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/361 (7%), Positives = 84/361 (23%), Gaps = 82/361 (22%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS--FKENFVFSQAS 87
+ +G + ++ V I+ + S ++ + +
Sbjct: 59 EEKDALGEIGNICMGSAATTLSVLLNQTVSITSPRVTITTMEEFVKSFTIPHMTIYVRFT 118
Query: 88 LSSWSSNFFIGCSNNLVITL---------------------------LENLLGASHETIP 120
S + + + ++G + ++
Sbjct: 119 -EGLSGYNLLFMKLRDAAVMADLMMGGDGSQASEDLTEISISAASEAMNQMIGTASTSMA 177
Query: 121 QLYNRS--LSTVEKKLAKRTIA-QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLS 177
+ R +S E ++ + ++ ++ + + + D ++ +
Sbjct: 178 AMIGRPVNISPPETRIVNKDNEARVFDLVQEEHIVVVWFKMTIGNILDTQIMQVMGINTA 237
Query: 178 NEFV--TTINMNMTIE------------------NVASSFVLI---IPQETLLKTTLISL 214
E + + A +
Sbjct: 238 KEEANFILNRF-LQVGSEEEPSLPEDYPSARPDAGEAGRIDEAGEDFAASLFEDFSRPEP 296
Query: 215 SSQNKSENQSEDLIDPFA-------------------------RKTYQLNVNIDTRINLK 249
+ + + + + +
Sbjct: 297 GKEAERLQGPPAWEQEIRPPAGAAARPGTEPLTAPAAIDQRRLDLILDIPLKVTVILGRT 356
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ +KD++ L G V+ + + NG + E+ V +N+ +RIT I +++
Sbjct: 357 RWPIKDILGLTPGSVVELQNLVDEPVEVLVNGVLVAFGEVVVVNENFGVRITSIIGPEER 416
Query: 310 S 310
Sbjct: 417 L 417
>gi|307637113|gb|ADN79563.1| flagellar motor-switch protein [Helicobacter pylori 908]
gi|325995704|gb|ADZ51109.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997300|gb|ADZ49508.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 285
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 16/225 (7%)
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
+LV L + +LG + ++ N L ++ +A I+ L + +
Sbjct: 67 DLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQ-ELLPKLNFTTT 124
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI-------IPQETLLKTTLISL 214
+ L K + + M + +LI + + +
Sbjct: 125 NAEIAKDLPKKEDYA---KAVVFSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEETTK 181
Query: 215 SSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S+ +++ L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 182 SATEETKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLV 241
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 242 NDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285
>gi|15611462|ref|NP_223113.1| flagellar motor switch protein FliY [Helicobacter pylori J99]
gi|4154923|gb|AAD05971.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 20/227 (8%)
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI----------- 150
+LV L + +LG + ++ N L ++ +A I+ L
Sbjct: 67 DLVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKSQELLPKLNFTTTN 125
Query: 151 -STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
+E + + + K ++ V I F +E T
Sbjct: 126 AEIAKELPKKEDYAKAMVFSFKMEAIKESQIVLLIT-----SAFEGQFEKTHKEEKEETT 180
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ ++ + I + + +N+ RI KK LKDVV++ IG V+
Sbjct: 181 KSATEETKTHDASLENIEIRNISM-LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQ 239
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 240 LVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 285
>gi|138894752|ref|YP_001125205.1| flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
gi|134266265|gb|ABO66460.1| Flagellar motor switch protein [Geobacillus thermodenitrificans
NG80-2]
Length = 393
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 43/311 (13%)
Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A L G D E S++ + + + VDIS +
Sbjct: 108 DAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLH 167
Query: 67 SGKFSHI--IHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + F + S SN + L+ +LLG+S E
Sbjct: 168 LLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKELVTHLLGSSAEAA 227
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
L P+ + +
Sbjct: 228 GTLEKEE----------------------------NIDPSSAGAVPREEPQPAPAYAHAS 259
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ N + + + ++ + + +
Sbjct: 260 DGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAATEARNL-ELLFDVP 318
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++++++ L G +I + N K I E+ + +N+ +R
Sbjct: 319 LQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVR 378
Query: 300 ITDRINFDQKS 310
ITD ++ + +
Sbjct: 379 ITDIVSQNDRL 389
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + + F
Sbjct: 36 QDAIGEIGNISFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEG 95
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG T + ++ + + + ++
Sbjct: 96 FLGTNLLVIEQQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIF 155
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ + SP D+ K +F ++ + I V S+ + ++P + +
Sbjct: 156 NKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALVDSNIMQLLPIDFAKEL 215
Query: 210 TLISLSSQNKSENQ 223
L S ++
Sbjct: 216 VTHLLGSSAEAAGT 229
>gi|188527226|ref|YP_001909913.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
gi|188143466|gb|ACD47883.1| flagellar motor switch protein FliY [Helicobacter pylori Shi470]
Length = 288
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/284 (17%), Positives = 92/284 (32%), Gaps = 24/284 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
+ + + S + S S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELVAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK----------TTLISLS 215
+ E I + +E + S ++++ + S
Sbjct: 126 TNAEIAKELPKKEDYAKMIVFSFKMEALKESQIILLTTAAFERQFEKTHQEEKEEETKKS 185
Query: 216 SQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + + L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 186 ATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVN 245
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 246 DPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 288
>gi|225375336|ref|ZP_03752557.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
16841]
gi|225212825|gb|EEG95179.1| hypothetical protein ROSEINA2194_00961 [Roseburia inulinivorans DSM
16841]
Length = 379
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/351 (9%), Positives = 92/351 (26%), Gaps = 75/351 (21%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88
+ +G + ++ VDIS +S I ++++ VF A
Sbjct: 29 AEKDAIGEIGNISMGTAATTLFSLVNRKVDISTPVVSFATWSDICDAYEKPCVFIRIAYT 88
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGA------------SHETIPQLYNRSLSTVEKKLAK 136
+ + + V + + ++G I + N+ + + L+
Sbjct: 89 VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 148
Query: 137 RTIAQI-----SAVLNQCISTTQE---------------SSPNLEDFYDIDYLKKNTNRL 176
I A L E + D D + ++
Sbjct: 149 MLNKTIDISPPVADLVDLHDNIDEGSIADFLSGSFVKISFKMEIGDLVDSEIMQLYPVSF 208
Query: 177 SNEFVTTIN----------------------------MNMTIENVASSFVLIIPQETL-- 206
+ E +I M + ++ Q +
Sbjct: 209 AKEMCASITKNMEADTNSTSNEAEKAVSAQPAAPQPQMEQPMGGQQVMGQPMMGQPMMGQ 268
Query: 207 ------------LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
+ Q + + ++ + + + + ++
Sbjct: 269 PMMAPNMNQMYAQPVNVQPAQFQAFNPSIAQVAGAENIGLIMDVPLEVTVELGRTTKSIH 328
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+++ G +I + NGK + E+ + +++ +RIT+ +
Sbjct: 329 EILDFAPGTIIELNRIAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVK 379
>gi|108562842|ref|YP_627158.1| flagellar motor switch protein FliY [Helicobacter pylori HPAG1]
gi|107836615|gb|ABF84484.1| fliY protein [Helicobacter pylori HPAG1]
Length = 287
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 21/282 (7%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVIT 106
+ + + S + S S+ + +LV
Sbjct: 14 STLEGLVGKASSVGLEKEVSNSEEAWESLISAPYARVMVSAIEKEESSIELLAPVDLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLNFTTTN 127
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL------KTTLISLSSQNKS 220
+ K + + + + +E + S ++++ ++Q+ +
Sbjct: 128 AEIAKELPKKEDYTKAMV-FSFKMEAIKESQIILLTTAAFECQFEKTHKEEKEETTQSAA 186
Query: 221 ENQSEDLIDPFARKTY------QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
E + + +N+ RI KK LKDVV++ IG V+
Sbjct: 187 EEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVNDP 246
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 247 LEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 287
>gi|219670151|ref|YP_002460586.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfitobacterium hafniense DCB-2]
gi|219540411|gb|ACL22150.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Desulfitobacterium hafniense DCB-2]
Length = 417
Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 39/105 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
T + + + + + + + K T+K+++ L G VI
Sbjct: 308 PPTPVQPAQFVPLKPGDPLHGQENLELILDVPLQVSVELGKAKKTIKEILELGPGSVIEL 367
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NGK I CE+ + + + IRITD + ++ K
Sbjct: 368 DRLAGEPVDMIVNGKLIAKCEVVVINETFGIRITDIVQPGERMTK 412
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 9/215 (4%)
Query: 14 HPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI 73
P + D + + + + + V+I+ I
Sbjct: 22 DPPAQKEPAVEFSDMER--DAIGEIANISMGTAATTLSQLLGKKVEITTPKVDMASAEQI 79
Query: 74 IHSFKENFVFSQASLS-SWSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVE 131
+ V + + S +++ ++G + E +L S+S +
Sbjct: 80 RKDYPIPSVIVDVRYKAGIEGSNLLILSQRDGAVIVDLMMGGTGENPPTELSELSISGIS 139
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+ + + + ++ ++ + +P L D D S+E + I+ M
Sbjct: 140 EA-MNQMMGSAATSMSTMFNSVVDITPPQLVLNDMSPQDDDIITNVLQSHEELVRISFRM 198
Query: 189 TIENVASSFVL-IIPQETLLKTTLISLSSQNKSEN 222
+E+V S ++ +IP L + S +
Sbjct: 199 VVEDVIDSILVQVIPIHVAKGMVGKLLGTMGGSGS 233
>gi|255589689|ref|XP_002535050.1| conserved hypothetical protein [Ricinus communis]
gi|223524126|gb|EEF27332.1| conserved hypothetical protein [Ricinus communis]
Length = 104
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 205 TLLKTTLISLS-SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+ + Q+ ++ E + +V ++ I K L+D++ L+ G
Sbjct: 1 MIEPIRETLDAGMQSDVDDIDERWVRSLREDVMSASVVVNGTIAEKDVALRDIIDLEPGD 60
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
VIP +L+ANG I LG+ N ++I ++ +
Sbjct: 61 VIPVDL--GEKIVLTANGVPIMYARLGQSRGNLALQILEKFDR 101
>gi|163856450|ref|YP_001630748.1| flagellar motor switch protein FliN [Bordetella petrii DSM 12804]
gi|163260178|emb|CAP42480.1| flagellar motor switch protein FliN [Bordetella petrii]
Length = 181
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 97 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 156
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
+ Y IR+TD I ++ + ++R
Sbjct: 157 EEKYGIRLTDIITPSER-INRLNNRR 181
>gi|196247626|ref|ZP_03146328.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. G11MC16]
gi|196212410|gb|EDY07167.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. G11MC16]
Length = 394
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/311 (11%), Positives = 84/311 (27%), Gaps = 43/311 (13%)
Query: 14 HPILLARLT----GKLGDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A L G D E S++ + + + VDIS +
Sbjct: 109 DAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIFNKRVDISPPTLH 168
Query: 67 SGKFSHI--IHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + F + S SN + L+ +LLG+S E
Sbjct: 169 LLDLTEGKGLEYLPDEDFFIKVSFRLKIGALIDSNIMQLLPIDFAKELVTHLLGSSAEAA 228
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
L P+ + +
Sbjct: 229 GTLEKEE----------------------------NIDPSSAGAVPREEPQPAPAYAHAS 260
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ N + + + ++ + + +
Sbjct: 261 DGVFSSAASRFTNETVGGRSKEEESVAERHIQAADFAEFDDPPLAATEARNL-ELLFDVP 319
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++++++ L G +I + N K I E+ + +N+ +R
Sbjct: 320 LQVTVELGRTKRSVQEILQLSAGSIIELDKLAGEPVDIFVNNKLIAKGEVVVIDENFGVR 379
Query: 300 ITDRINFDQKS 310
ITD ++ + +
Sbjct: 380 ITDIVSQNDRL 390
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/194 (9%), Positives = 56/194 (28%), Gaps = 2/194 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + + F
Sbjct: 37 QDAIGEIGNISFGSSATALSTLLNQKVEITTPSVSVVERKRVADEFPRPYVAIQVNYTEG 96
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG T + ++ + + + ++
Sbjct: 97 FLGTNLLVIEQQDAAVIADLMLGGDGTTADSSLGEIQLSAVQEAMNQMMGSAATSMSTIF 156
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ + SP D+ K +F ++ + I + S+ + ++P + +
Sbjct: 157 NKRVDISPPTLHLLDLTEGKGLEYLPDEDFFIKVSFRLKIGALIDSNIMQLLPIDFAKEL 216
Query: 210 TLISLSSQNKSENQ 223
L S ++
Sbjct: 217 VTHLLGSSAEAAGT 230
>gi|291617856|ref|YP_003520598.1| FliN [Pantoea ananatis LMG 20103]
gi|291152886|gb|ADD77470.1| FliN [Pantoea ananatis LMG 20103]
gi|327394273|dbj|BAK11695.1| flagellar motor switch protein FliN [Pantoea ananatis AJ13355]
Length = 137
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 NDKYGVRITDIITPSERM 132
>gi|220929455|ref|YP_002506364.1| flagellar motor switch protein [Clostridium cellulolyticum H10]
gi|219999783|gb|ACL76384.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium cellulolyticum H10]
Length = 402
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 3/156 (1%)
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
+ +P+ ++ + +M + PQ +
Sbjct: 250 QMAPSFDNQNSYIEPPLQPVMQPQIPQPMMQQSMPNFGYDGVYQ--EPQRQRAPVNVQPA 307
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
Q + S + L + + + + +KD++ G VI
Sbjct: 308 QFQAFDDGLSVTEKKNIS-LIMDLPLQVTVELGRTQKLIKDILEFGSGSVIELDKLAGEP 366
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +++ +RITD I+ ++
Sbjct: 367 VDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 402
>gi|239826625|ref|YP_002949249.1| flagellar motor switch protein [Geobacillus sp. WCH70]
gi|239806918|gb|ACS23983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. WCH70]
Length = 401
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/311 (13%), Positives = 100/311 (32%), Gaps = 37/311 (11%)
Query: 14 HPILLAR-LTGKLGDKKTI---EKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A + G G T E S++ + + VDIS +
Sbjct: 110 DAAIIADLMLGGDGKNTTDSLGEIQLSAVQEAMNQMMGSAATSMSTIFGKRVDISPPTVH 169
Query: 67 S--GKFSHIIHSFKENFVFSQASLSS-----WSSNFFIGCSNNLVITLLENLLGASHETI 119
K I + VF + S SN + L++ LL
Sbjct: 170 LLDVKEGEGIEYLPDEDVFIKVSFRLKIGNLIDSNIMQLLPVDFAKELVQQLL------H 223
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
S S V++ + + + + + T ++SP+ E +Y+ T +
Sbjct: 224 STSETDSSSGVKEAGKETVMQEAALSKQSVTAETIDTSPSYELPKTENYVTHETAPSHRD 283
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
N ++ + ++ + ++ + + +
Sbjct: 284 T-----------NHFGTY-----ARAGERQIQSVDFAEFEPSPPADAEVKNLS-LLLDVP 326
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K +++++++L G +I + N K I E+ + +N+ +R
Sbjct: 327 LQVTVELGRTKRSVQEILSLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVR 386
Query: 300 ITDRINFDQKS 310
+TD I+ +
Sbjct: 387 VTDIISQSDRL 397
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/220 (7%), Positives = 63/220 (28%), Gaps = 2/220 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + ++ F
Sbjct: 38 QDALGEIGNISFGSSATTLSMLLNQKVEITTPSVSVIERKNVADEFPLPYVAIQVNYTDG 97
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + +LG + + ++ + + + ++
Sbjct: 98 LLGTNLLVIKQEDAAIIADLMLGGDGKNTTDSLGEIQLSAVQEAMNQMMGSAATSMSTIF 157
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D+ + + ++ + I N + S+ + ++P + +
Sbjct: 158 GKRVDISPPTVHLLDVKEGEGIEYLPDEDVFIKVSFRLKIGNLIDSNIMQLLPVDFAKEL 217
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
L S +++++ S + ++ +
Sbjct: 218 VQQLLHSTSETDSSSGVKEAGKETVMQEAALSKQSVTAET 257
>gi|119469992|ref|ZP_01612797.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
gi|119446702|gb|EAW27975.1| flagellar motor switch protein M [Alteromonadales bacterium TW-7]
Length = 133
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 6/113 (5%)
Query: 2 RGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDIS 61
G+ +T R+ + + + + M ++S
Sbjct: 27 DGEDGGGSTLQYDFSSQDRIVRG------RMPTLEIVNERFARHMRISLFNMMRRTAEVS 80
Query: 62 YTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
Q KF +H+ + I LV L++N LG
Sbjct: 81 INGVQMIKFGEYVHTLFVPTSLNMVRFRPLKGTGLITMEARLVFILVDNFLGG 133
>gi|213418731|ref|ZP_03351797.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 102
Score = 83.9 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
S ++ ++ D R+ + + L ++ LK G V+P I
Sbjct: 5 ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKP--DRIIA 62
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINF 306
+G + + + G V Y +R+ IN
Sbjct: 63 HVDGVPVLTSQYGTVNGQYALRVEHLINP 91
>gi|304398863|ref|ZP_07380733.1| flagellar motor switch protein FliN [Pantoea sp. aB]
gi|304353567|gb|EFM17944.1| flagellar motor switch protein FliN [Pantoea sp. aB]
Length = 135
Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 53 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 112
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 113 NDKYGVRITDIITPSERM 130
>gi|238916761|ref|YP_002930278.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
27750]
gi|238872121|gb|ACR71831.1| flagellar motor switch protein FliN/FliY [Eubacterium eligens ATCC
27750]
Length = 437
Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/289 (9%), Positives = 76/289 (26%), Gaps = 19/289 (6%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ-SGKFSHIIHSFKE----NFVFSQA 86
S++G + + + +DIS ++ + FV
Sbjct: 150 LSAIGEAMNQMMGSAATSMSSMFNRKIDISPPVANLVETYNELDEGMPAFLNKPFVKVAF 209
Query: 87 SL---SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS 143
+ S LL +S ++ + ++ Q
Sbjct: 210 KMQIGDLIDSEIMQLYPKEFAQELLNMFTPSSDDSSNSQPQPEPQPASQAPVQQPAPQAQ 269
Query: 144 AVLNQCISTTQESSPNLEDFYD----IDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
V P++ ++ + + + +
Sbjct: 270 PVQQPAPQAQSVQQPDMNMQQAGMMGQAVPQQGMAMQQGMPMQGMPYGYGMP-MQGMMGQ 328
Query: 200 IIP---QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+P + + Q + + + + + + + ++KD+
Sbjct: 329 PMPMQGYAQPQDVNVAPAAFQPFATDVNPISQKENIELIKDVPLEVTVELGRTTKSIKDI 388
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ G ++ + NGK + E+ + +++ +RIT+ I
Sbjct: 389 LEFAPGTIVELNKIAGESVDVLVNGKYVAKGEVVVIEESFGVRITEIIK 437
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/200 (12%), Positives = 64/200 (32%), Gaps = 6/200 (3%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SS 90
+ + + + V+I+ + + + + V Q S
Sbjct: 52 KDAVGEISNISMGTAATTLSSLLSQKVNITTPKVEVATWDDLSREYDRPCVMMQISYKEG 111
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS--LSTVEKKLAKRTIAQISAVLNQ 148
+ N + N V + + ++G + P LS + + + + + ++
Sbjct: 112 LAGNNVLILKENDVKIITDLMMGGTGTANPDEPLSELHLSAIGEA-MNQMMGSAATSMSS 170
Query: 149 CISTTQESSPNLED-FYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206
+ + SP + + + L + N+ + M I + + S + + P+E
Sbjct: 171 MFNRKIDISPPVANLVETYNELDEGMPAFLNKPFVKVAFKMQIGDLIDSEIMQLYPKEFA 230
Query: 207 LKTTLISLSSQNKSENQSED 226
+ + S + S N
Sbjct: 231 QELLNMFTPSSDDSSNSQPQ 250
>gi|92114086|ref|YP_574014.1| flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
gi|91797176|gb|ABE59315.1| Flagellar motor switch FliN [Chromohalobacter salexigens DSM 3043]
Length = 175
Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K ++ L G VI + NG I E+ V
Sbjct: 93 DLIMDIPVKLSVELGRTKITIKQLLELAQGSVIELDGLAGEPMDILINGYLIAQGEVVVV 152
Query: 293 GKNYTIRITDRINFDQKSLK 312
Y IRIT+ I ++ K
Sbjct: 153 DDKYGIRITEIITPSERVKK 172
>gi|308187298|ref|YP_003931429.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
gi|308057808|gb|ADO09980.1| Flagellar motor switch protein fliN [Pantoea vagans C9-1]
Length = 135
Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 53 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 112
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 113 NDKYGVRITDIITPSERM 130
>gi|254255041|ref|ZP_04948358.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
gi|124899686|gb|EAY71529.1| Flagellar motor switch protein [Burkholderia dolosa AUO158]
Length = 292
Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/288 (12%), Positives = 81/288 (28%), Gaps = 32/288 (11%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
L P L R LGD +L +L + + + +S ++ +
Sbjct: 29 ALDPCTLGRPFHLLGDFHA------ALRRRIGTYLQDSYNHRCGARLIVSDSAIVPHRSG 82
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ ++ I L++ LL G E + + + E
Sbjct: 83 EALAAWHG--------FGDDQGAIGIRIERGLLLLLLAYHYGDRAERLEADSLPAETRTE 134
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
++ + + E P LE ++ + ++ +
Sbjct: 135 QRF----------AMQTRRALLGELLPLLELDAGALTPQQFDGIGPGSQILSVIVRDESL 184
Query: 192 NVASSFVLIIPQETLLKTTLI-SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+V + L + +D + V ++ I ++
Sbjct: 185 DVTGRIEFALDDAWLARLFATCVPRRVRDRAPSDDD--GALGARI---PVALNATIVTRE 239
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
L DV+ L G ++P A + +G +++ + G +
Sbjct: 240 LLLGDVLDLNRGSILPIRLP--DAADVDVDGLKVFRAAVVEHGGKICL 285
>gi|296133036|ref|YP_003640283.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermincola sp. JR]
gi|296031614|gb|ADG82382.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermincola potens JR]
Length = 412
Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + K T+++++ L G V+ L NGK + E+ +
Sbjct: 331 DLIMDVPLQITVELGKAKKTIREILNLAPGSVVELDKLAGEPVDLMVNGKLLAKGEVVVI 390
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ IRITD ++ ++
Sbjct: 391 DENFGIRITDIVSPMERVTN 410
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/207 (11%), Positives = 68/207 (32%), Gaps = 5/207 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKT--IEKISSSLGYLYKKFLPKIFKEKMDLDV 58
+R + + + P G GD+ T + + + + V
Sbjct: 15 LRSDAFQEAINASEPDTHQAAAGPTGDELTNMEKDAVGEVANMVMGSAATALSTLLGKKV 74
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHE 117
+I+ + + + H + ++ ++ + + + +++ ++
Sbjct: 75 EITTPVVEITTPARLRHEYPLPYLLVNVEYVTGIKGSNVLIIKDGDAGVIVDLMMMGDGT 134
Query: 118 TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKK-NTNRL 176
+ P + + + + S + I E SP D ++ +
Sbjct: 135 SPPAQLEEMHLSAIAEAMNQMMGSASTAFSTIIKERVEISPPTVDLINLATDELKGRLAN 194
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIP 202
+E + ++ MTIE+ V S + ++P
Sbjct: 195 PDEPIVKVSFKMTIEDLVNSEMMQLMP 221
>gi|308063278|gb|ADO05165.1| flagellar motor switch protein FliY [Helicobacter pylori Sat464]
Length = 290
Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 25/230 (10%)
Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
LV L + +LG + ++ N L ++ +A I+ L QE P L
Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN- 122
Query: 163 FYDIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLKTTLIS-------- 213
+ + E + + +E + S ++++ +
Sbjct: 123 -FTTINAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAAFERQFEKMHQEEKEEK 181
Query: 214 ----LSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
S+ + + L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 182 EETTKSTAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 241
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 242 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290
>gi|115358963|ref|YP_776101.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
gi|115284251|gb|ABI89767.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
Length = 381
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 19/291 (6%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ P+ G D I ++L L + V++ S
Sbjct: 98 IDPLAENEWLGDAADPAVPAVIRAALLADLAAPLAAALQAATRQRVEL-LPPPASVPAW- 155
Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ F W + + + + A+ + + +
Sbjct: 156 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFATPVATRADTRAAYAGLP 209
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
L + + +E + + R+ I +
Sbjct: 210 VPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNLLCVARVPAAPAWEITGRPSGN 268
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ + +P L T + S+ + + R L V++ +
Sbjct: 269 RLTVERIREMP---LEPTRTDTPSATTHDASADDA-----PRSLDSLAVDLRFELPPTSI 320
Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ TL+ G VI L ANG I + +L VG+ +R+
Sbjct: 321 PLGELGTLQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 371
>gi|33592494|ref|NP_880138.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
gi|33572140|emb|CAE41683.1| flagellar motor switch protein FliN [Bordetella pertussis Tohama I]
gi|332381912|gb|AEE66759.1| flagellar motor switch protein FliN [Bordetella pertussis CS]
Length = 166
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 82 DLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 141
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
Y IR+TD I ++ + +R
Sbjct: 142 DDKYGIRLTDIITPSER-INRLNSRR 166
>gi|317048607|ref|YP_004116255.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
gi|316950224|gb|ADU69699.1| flagellar motor switch protein FliN [Pantoea sp. At-9b]
Length = 136
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 54 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 113
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 114 NDKYGVRITDIITPSERM 131
>gi|33601557|ref|NP_889117.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
gi|33575993|emb|CAE33073.1| flagellar motor switch protein [Bordetella bronchiseptica RB50]
Length = 172
Score = 83.2 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 88 DLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 147
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
Y IR+TD I ++ + +R
Sbjct: 148 DDKYGIRLTDIITPSER-INRLNSRR 172
>gi|260432994|ref|ZP_05786965.1| surface presentation of antigens protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416822|gb|EEX10081.1| surface presentation of antigens protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 331
Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/267 (11%), Positives = 82/267 (30%), Gaps = 16/267 (5%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
L + E+ L + + QSG+ + + + + LV
Sbjct: 3 LARAAVERFRLSASV-IGAKQSGRRQEAVTEGLDESRLFLLFAADEQRVACLAMDPGLVA 61
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN--LEDF 163
+++ + R + + + + ++ A Q + ++ + E
Sbjct: 62 AVIQKQTIGEV-SPDPPPVRKFTDTDAAIVAPLVEEMLARGAQLVEEPEDKARLSGYEFL 120
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIEN--VASSFVLIIPQETLLKTTLISLSSQNKSE 221
L+ + L + ++ + +E L++P ++ + E
Sbjct: 121 SRASGLRAVSLALVQDVYDVFDLTVELEGGVRQGVVSLLLPPQSAKP---------DSHE 171
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-AN 280
Q + A + L + I L ++ L G+V+P + + +
Sbjct: 172 EQGAEGGAKLADASGVLRAELTAVIAQMHLPLSELSALTEGKVLPLSNARLDRIAMQAID 231
Query: 281 GKEIYSCELGRVGKNYTIRITDRINFD 307
+ + LG+ G +R+ +
Sbjct: 232 RTRVATGRLGQCGGMRAVRLNEAHASK 258
>gi|172063755|ref|YP_001811406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
gi|171996272|gb|ACB67190.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
Length = 381
Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/291 (12%), Positives = 77/291 (26%), Gaps = 19/291 (6%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ P+ G D I ++L L + V++ S
Sbjct: 98 IDPLAEHEWLGDAADPAVPAVIRAALLADLAAPLTAALQAATRQRVEL-LPPPASVPAW- 155
Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ F W + + + + A+ + + +
Sbjct: 156 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFATPAATRADTRAAYAGLP 209
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
L + + +E + + R+ I +
Sbjct: 210 VPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNLLCVARVPAAPAWEITGRPSGN 268
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ + +P L T + S + + R L V++ +
Sbjct: 269 RLTVERIREMP---LEPTRTDTPSVTTHDASADDA-----PRSLDSLAVDLRFELPPTSI 320
Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ TL+ G VI L ANG I + +L VG+ +R+
Sbjct: 321 PLGELGTLQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 371
>gi|317129196|ref|YP_004095478.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
cellulosilyticus DSM 2522]
gi|315474144|gb|ADU30747.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
cellulosilyticus DSM 2522]
Length = 398
Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 82/288 (28%), Gaps = 40/288 (13%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH--SFKENFVFSQAS 87
I + ++ + + VDIS + +F ++ V Q S
Sbjct: 141 QISAVQEAMNQ-MMGSASTSMSQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQIS 199
Query: 88 LSSWSSN-----FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
S +++ LL + E I + + + + + + Q
Sbjct: 200 FDLKVGTLIDSKIMQLVSVEFAKDMVDQLL--NPEPIEDITEKDANVNTQPVEETVTQQA 257
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
+ + + + + S +P
Sbjct: 258 F-------------------PQTNEQPQ----MDATNQHQSARQEPQFVSNGSR----LP 290
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + N Q + + + + + K ++KD++ L G
Sbjct: 291 DRSAE---VQPAAFSNFETPQLGNNEAKNLDMLLDIPLEVTVELGRTKRSIKDILELTQG 347
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+I + N + I E+ + +N+ +R+TD ++ ++
Sbjct: 348 SIIELDKLAGEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSKRERL 395
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 49/165 (29%), Gaps = 1/165 (0%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ +G + ++ VDI+ K S + F + S
Sbjct: 41 SSIEQDALGEIGNISFGSSATALSTLLNQKVDITTPRVSIVKSSELDQQFPKPHIAVSVQ 100
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + N + + +LG + + ++ + + S +
Sbjct: 101 YTVGFEGMNLLVIKNTDAAIIADLMLGNDGTNAGEELGEMQISAVQEAMNQMMGSASTSM 160
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
+Q + + SP + ++ ++ + I+ ++ +
Sbjct: 161 SQIFNKRVDISPPDVEQLNLKEDPDKVTFPDDDVMLQISFDLKVG 205
>gi|254485678|ref|ZP_05098883.1| Surface presentation of antigens protein [Roseobacter sp. GAI101]
gi|214042547|gb|EEB83185.1| Surface presentation of antigens protein [Roseobacter sp. GAI101]
Length = 413
Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 12/222 (5%)
Query: 95 FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQ 154
+ LV L++ P + R ++ + LA I + + + T +
Sbjct: 83 GAVMIDPALVGGLIQQQTMGKVLDAPAGFVRPMTGTDAALAAPLIDALLERAAKLVETDE 142
Query: 155 E----SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + L + + + ++M VL +P
Sbjct: 143 DRAVLTGYRFGAKSHNVRLLMLSLDAPEFHIIRMTVDMAQGARQGELVLCLPV----PPR 198
Query: 211 LISLSSQNKSENQ---SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + + QL + + +++D L +GQV+P
Sbjct: 199 HAVAAPTSPDAGSAAADPVAPRTLSASVLQLKAELMVSLAQVTMSIRDAGGLHVGQVLPL 258
Query: 268 LHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
A + +G+ + LG+ +R+ R+
Sbjct: 259 GSVSFDAAQVRTKDGRILGVGSLGQSDGMRAMRLKHRVKTRD 300
>gi|327441043|dbj|BAK17408.1| chemotaxis protein CheC, inhibitor of MCP methylation [Solibacillus
silvestris StLB046]
Length = 422
Score = 82.8 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/311 (11%), Positives = 86/311 (27%), Gaps = 23/311 (7%)
Query: 14 HPILLAR-LTGKLG---DKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A + G G + E S++ + + + VDIS +
Sbjct: 117 DAAIIADLMLGGDGINPRPELSEIQLSAVQEAMNQMMGSAATSMSTVFNQKVDISPPTID 176
Query: 67 S--GKFSHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + + S SN ++++L+G + E +
Sbjct: 177 LLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKIVKSLMGETDEPL 236
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
V+ + Q + P E + + E
Sbjct: 237 TATTTVEPPPVQPTQQQPMQQAQQPTAQQSMFEQPVQQPMYEQP----VPQPVYQQPIYE 292
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ V P T + + +
Sbjct: 293 QPVQQQAYQQQQPVYEQ-----PAYTAPPANVQQAQFASFESANITQSEARNLNMLLDIP 347
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++K+++ L G +I + N + I E+ + +N+ +R
Sbjct: 348 LQVTVELGRTKRSVKEILELSSGSIIELDKLAGEPVDILVNSRLIAKGEVVVIDENFGVR 407
Query: 300 ITDRINFDQKS 310
ITD ++ +
Sbjct: 408 ITDILSQADRL 418
Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/190 (11%), Positives = 61/190 (32%), Gaps = 2/190 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
+G + + VDI+ S + + F +V Q +
Sbjct: 45 IDALGEVGNISFGSSATALSSLLGQKVDITTPSISMINRNRLEQEFPHPYVAVQVEYTTG 104
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S + + + + +LG + + ++ + + + ++
Sbjct: 105 LSGMNLLVIKQSDAAIIADLMLGGDGINPRPELSEIQLSAVQEAMNQMMGSAATSMSTVF 164
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ + SP D +I + ++E + I+ + I + S+ + ++P + K
Sbjct: 165 NQKVDISPPTIDLLNISQNEGTDTIPTDELLVKISFRLRIGELIDSNLMQLLPLKFSKKI 224
Query: 210 TLISLSSQNK 219
+ ++
Sbjct: 225 VKSLMGETDE 234
>gi|310659030|ref|YP_003936751.1| flagellar motor switching and energizing phosphatase [Clostridium
sticklandii DSM 519]
gi|308825808|emb|CBH21846.1| flagellar motor switching and energizing phosphatase [Clostridium
sticklandii]
Length = 383
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 50/305 (16%)
Query: 21 LTGKLGDKKTIEKI----SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHI 73
+ G G E++ S++ + + E + +DI+ FS
Sbjct: 111 MLGGDGKSDIPEELNEIHLSAISEAMNQMIGSSSTSLSEMLAKKIDITPPIVSKVNFSDS 170
Query: 74 -----IHSFKENFVFSQASL---SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ S E + + S + L+ +L E Q+
Sbjct: 171 QLDPELLSADEPIICISFRMTVGDLIDSTIMQILPIDFARALVNRMLYGESEEEEQVTET 230
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
V K++ + S + ++ + + +KN F + +
Sbjct: 231 IEPQVAKQVEPQVQEDYSDDIEDDEYYEEDDDDSYYEPQKPPKKQKNVKVKPAAFASFDS 290
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
N NV + L + + +
Sbjct: 291 PNKRTGNVPENIDL-----------------------------------IKDVLLKVTVE 315
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + D++ G ++ + NGK++ E+ + +NY IRITD I
Sbjct: 316 LGRTTKPIDDILQFTPGSILELDRLVGEPLDIMVNGKKVAKGEVVVIDENYGIRITDIIK 375
Query: 306 FDQKS 310
+++
Sbjct: 376 AEKRL 380
>gi|320184484|gb|EFW59288.1| Flagellar motor switch protein FliN [Shigella flexneri CDC 796-83]
Length = 137
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKSLK 312
Y +RITD I ++ +
Sbjct: 115 ADKYGVRITDIITPSERMHR 134
>gi|332096900|gb|EGJ01889.1| flagellar motor switch protein fliN [Shigella boydii 3594-74]
Length = 134
Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKSLK 312
Y +RITD I ++ +
Sbjct: 112 ADKYGVRITDIITPSERMHR 131
>gi|157959917|ref|YP_001499951.1| hypothetical protein Spea_0087 [Shewanella pealeana ATCC 700345]
gi|157844917|gb|ABV85416.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
Length = 293
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/294 (12%), Positives = 84/294 (28%), Gaps = 28/294 (9%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
P+ L+ + +++ + + L I ++ +S T
Sbjct: 17 EVRPV--ALIKEKLARSRLLAQLDQCLRPIMDAVNELLHPIIRQGHHGLSQVSLT----T 70
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K S + + + + + L GA T + RS S
Sbjct: 71 KTSSYVPELHHAWFLLSYNRIALGWW---RIDKCTLDQLASGYYGAFASTP-KSPLRSPS 126
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E +L KR + L P E D L+ +N + ++
Sbjct: 127 QSEFRLVKRLMIAAIKRL-----------PITEIDEDALELELLSNETPIKAPVCCELSF 175
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ + + + L + Q L + A + Q+ + + +
Sbjct: 176 PAAHSGPPMLFFMSEYLLGLMAELPSQYQ-----ADPALSEKLAHRLRQIPLRVLLELGH 230
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T+L + L +G V+P + + ++ + ++T
Sbjct: 231 QSTSLTSLQNLAVGDVLPMNLHSRCPVT--VGKRPLFYATVHTHEGQMVAKLTQ 282
>gi|238920319|ref|YP_002933834.1| flagellar motor switch protein FliN, [Edwardsiella ictaluri 93-146]
gi|238869888|gb|ACR69599.1| flagellar motor switch protein FliN, putative [Edwardsiella
ictaluri 93-146]
Length = 137
Score = 82.4 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 115 NDKFGVRITDIITPSERM 132
>gi|332702323|ref|ZP_08422411.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
Walvis Bay]
gi|332552472|gb|EGJ49516.1| flagellar motor switch protein FliN [Desulfovibrio africanus str.
Walvis Bay]
Length = 181
Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 37/93 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+++++ + + + + + K + +++ L G V+ +
Sbjct: 85 HEAKSPRPEQTKRDLDFILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEI 144
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + IR+TD I+ ++
Sbjct: 145 YVNGKLVARGEAVVINEKFGIRLTDIISPIERV 177
>gi|291558210|emb|CBL35327.1| flagellar motor switch protein FliN [Eubacterium siraeum V10Sc8a]
Length = 414
Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/304 (11%), Positives = 90/304 (29%), Gaps = 25/304 (8%)
Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFV 82
D+ I +S + E + + +DIS + + + ++++ +
Sbjct: 105 FDELNISAVSEVMNQ-MMGASSTALSEFLGMGIDISTPTPYILSEINIAD-LQNYEQTDM 162
Query: 83 FSQASLSSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ + S F +L TL + ++G + P + + + + + +
Sbjct: 163 VAAINFDLTIDGVIKSEFISVLDIDLAATLADRMIGGATSPEPIVTEPAPAPAPQPVPQA 222
Query: 138 TIAQISAVLNQC--------ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-- 187
Q +A + Q + + ++ +
Sbjct: 223 EPVQQAAPVQQATPVPQATPMPQVAPVQQAAPVPQAAPMPQVAPVPQADMYAQQGYYGYP 282
Query: 188 ---MTIENVASSFVLII-PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
M ++ PQ + ++ + + + + I
Sbjct: 283 NPAMNPAMYGQPVQPVMQPQPAVNYRNAQLAQFESFEAPLGSEQKENLQ-LLMDVPLQIS 341
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
I K +KD++ G +I + + NG I ++ + N+ +RIT+
Sbjct: 342 VEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAVRITEI 401
Query: 304 INFD 307
+
Sbjct: 402 VKSK 405
>gi|134298951|ref|YP_001112447.1| MCP methylation inhibitor CheC [Desulfotomaculum reducens MI-1]
gi|134051651|gb|ABO49622.1| CheC, inhibitor of MCP methylation [Desulfotomaculum reducens MI-1]
Length = 333
Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/295 (11%), Positives = 87/295 (29%), Gaps = 24/295 (8%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL- 88
I +G + + + V I Y + + SF ++ +
Sbjct: 34 QELDIIGEIGNICMGTAATTLSQLLSQRVIIGYPKIIVCQQDEVFGSFSTPYLIIEVQFK 93
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + + + + ++G + + + LS + + I + +
Sbjct: 94 EGLNGFNVLVINEEEIAIIADIMMGGNGQVTKPVMITEMELSASTEA-MNQMIGSSATAM 152
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP---- 202
+ +P + +T +++ V +TI ++ + + I
Sbjct: 153 ADLFGIGIDIAPPKATMVEDLLNASHTPLPTDKPVVVARFEITIGDIIKTTFMQITNVDA 212
Query: 203 ----QETLLKTTLISLSSQNKSENQSEDLIDPFARK-----------TYQLNVNIDTRIN 247
LL + + + E +I F + + V+++ +
Sbjct: 213 ARDQANYLLMKAGACDAENTEEKASDETVIQNFTQTKAPFDLPNLAGALAIPVDLEFSLG 272
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T D+ LK G + L G + EL + I+I+
Sbjct: 273 KIRCTAGDLAKLKKGDTLAIP-FSSQQIKLLVGGIPVALGELQTHAEETKIKISR 326
>gi|332284034|ref|YP_004415945.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
gi|330427987|gb|AEC19321.1| flagellar motor switch protein FliN [Pusillimonas sp. T7-7]
Length = 188
Score = 82.4 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 104 DMIMDIPVQLSVELGRARLTIKNILQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 163
Query: 293 GKNYTIRITDRINFDQKS 310
+ Y IR+TD I +
Sbjct: 164 DEKYGIRVTDIITPSDRI 181
>gi|82543592|ref|YP_407539.1| flagellar motor switch protein FliN [Shigella boydii Sb227]
gi|81245003|gb|ABB65711.1| FliN [Shigella boydii Sb227]
Length = 137
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKSLK 312
Y +RITD I ++ +
Sbjct: 115 ADKYGVRITDIITPSERMHR 134
>gi|322833204|ref|YP_004213231.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
gi|321168405|gb|ADW74104.1| flagellar motor switch protein FliN [Rahnella sp. Y9602]
Length = 138
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DMILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 ADKYGVRITDIITPSERM 133
>gi|295399821|ref|ZP_06809802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus thermoglucosidasius C56-YS93]
gi|294978224|gb|EFG53821.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus thermoglucosidasius C56-YS93]
Length = 395
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/290 (12%), Positives = 85/290 (29%), Gaps = 42/290 (14%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSH--IIHSFKENFVFSQASLS 89
S++ + + VDIS + I VF + S
Sbjct: 134 LSAVQEAMNQMMGSSATSMSTIFGKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFR 193
Query: 90 S-----WSSNFFIGCSNNLVITLLENLLGASHETIPQL--YNRSLSTVEKKLAKRTIAQI 142
SN + L++ LL +S E+ + N + ++ +
Sbjct: 194 LKIGDLIDSNIMQLLPVDFAKELVKQLLHSSGESSGEPTSSNSAPEAEKEAAVQEAAVSQ 253
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
+V + I P+ ++ + + +++
Sbjct: 254 PSVTAEAIGAQPSYEPSKTAAHETANHFGANAKSGERQIQSVDF---------------- 297
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
S + ++ + + + + + K ++++++ L G
Sbjct: 298 -AEFEP-----------SPSADTEVKNL--SLLLDVPLQVTVELGRTKRSVQEILQLSSG 343
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+I + N K I E+ + +N+ +R+TD I+ + K
Sbjct: 344 SIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVTDIISQSDRLKK 393
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/194 (8%), Positives = 57/194 (29%), Gaps = 2/194 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + ++ F
Sbjct: 37 QDALGEIGNISFGSSATALSVLLNQKVEITTPSVSIIQRKNVDSEFPLPYVAIQVNYTDG 96
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + ++ + + + ++
Sbjct: 97 FLGTNLLVIKQEDAAIIADLMLGGDGTNTADELGEIQLSAVQEAMNQMMGSSATSMSTIF 156
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP ++ K + + ++ + I + + S+ + ++P + +
Sbjct: 157 GKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFRLKIGDLIDSNIMQLLPVDFAKEL 216
Query: 210 TLISLSSQNKSENQ 223
L S +S +
Sbjct: 217 VKQLLHSSGESSGE 230
>gi|311105952|ref|YP_003978805.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
gi|310760641|gb|ADP16090.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans A8]
Length = 179
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 95 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 154
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
Y IR+TD I ++ + ++R
Sbjct: 155 EDKYGIRLTDIITPSER-INRLNNRR 179
>gi|261839265|gb|ACX99030.1| chemotaxis protein [Helicobacter pylori 52]
Length = 290
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 25/230 (10%)
Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLED 162
LV L + +LG + ++ N L ++ +A I+ L QE P L
Sbjct: 70 LVTALSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN- 122
Query: 163 FYDIDYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------------T 209
+ + E I + +E + S ++++ +
Sbjct: 123 -FTTINAEIAKELPKKEDYAKMIVFSFKMEALQESQIILLTTVAFERQFKKTHQEEKEEK 181
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ S+ + + L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 182 EETTKSATEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVE 241
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 242 LDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290
>gi|326204613|ref|ZP_08194469.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium papyrosolvens DSM 2782]
gi|325985180|gb|EGD46020.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium papyrosolvens DSM 2782]
Length = 400
Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
PQ ++ + Q + S + L + + + + +KD++
Sbjct: 292 EPQRQRSPVSVQPVQFQAFDDGLSATEKKNIS-LIMDLPLQVTVELGRTQKLIKDILEFG 350
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G VI + NGK I E+ + +++ +RITD I+ ++
Sbjct: 351 SGSVIELDKLAGEPVDILVNGKAIAKGEVVVIDESFGVRITDIIHPSKRL 400
>gi|15895483|ref|NP_348832.1| flagellar motor switch protein [Clostridium acetobutylicum ATCC
824]
gi|15025213|gb|AAK80172.1|AE007722_1 Flagellar switch protein FliY, contains CheC-like domain
[Clostridium acetobutylicum ATCC 824]
Length = 413
Score = 82.0 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + K +KD++ L G +I + + NGK++ E+ V
Sbjct: 331 DLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVV 390
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT +N +++
Sbjct: 391 DENFGVRITSIVNSEERI 408
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 2/201 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + + V+I+ + +F+ +S
Sbjct: 43 KDLLGEIGNISMGSASTALSTIIGQKVNITTPIVSVTTLETLKKNFEVPNVALDVKYVSG 102
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S + + ++G + + + + + + I + + +
Sbjct: 103 ISGENLLVMKVTDAAVIANLMMGGDGKVESKTLSEIELSAVSEAMNQMIGSAATSMATML 162
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
SP + +D N +E + + +TI + V S + I+P +T K
Sbjct: 163 LREVNISPPVSKIWDSKTDVLTDNIKEDENIVQVAFKLTIGDLVDSQIMQILPIDTSRKM 222
Query: 210 TLISLSSQNKSENQSEDLIDP 230
I + + E
Sbjct: 223 IDIMMGGSSNKEEPEVQQSAA 243
>gi|269139495|ref|YP_003296196.1| flagellar motor switch/type III secretory pathway protein
[Edwardsiella tarda EIB202]
gi|267985156|gb|ACY84985.1| flagellar motor switch/type III secretory pathway protein
[Edwardsiella tarda EIB202]
gi|304559384|gb|ADM42048.1| Flagellar motor switch protein FliN [Edwardsiella tarda FL6-60]
Length = 137
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 115 NDKFGVRITDIITPSERM 132
>gi|255026112|ref|ZP_05298098.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
Length = 515
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/286 (9%), Positives = 84/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V +S + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLSVPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|21672365|ref|NP_660432.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008471|sp|Q8KA39|FLIM_BUCAP RecName: Full=Flagellar motor switch protein FliM
gi|21622970|gb|AAM67643.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 311
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/269 (10%), Positives = 91/269 (33%), Gaps = 10/269 (3%)
Query: 24 KLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF 83
+ K + + + + IF + ++++++ + + +++ +F ++
Sbjct: 26 DRFLDQNEMKKLEKINKKFIQKIIMIFSSFIKSNIELNFYTVKINSYTNDDKNF-KHLYA 84
Query: 84 SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKRTIAQI 142
+ + + FI S N + ++ L G +I ++ + ++ E + K+ + I
Sbjct: 85 NSLKIETLEKKSFIFFSPNFLSVFIDFLFGGKGNSIIRMDIKKEITYTEHVINKKIVGFI 144
Query: 143 SAVLNQCISTTQESSPNLEDFYDI-DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
+ DF I +N+ T + + + ++I
Sbjct: 145 IDAYCESCKDFFYIDIKFLDFNIIKLNKHFF---YTNDLFITNYFSFNLNGIKIFLSILI 201
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDP--FARKTYQLNVNIDTRINLKKTTLKDVVTL 259
P + + ++ +K+ + ++ F + +++ + + L
Sbjct: 202 PVSIIKEKNKKIINFLDKNIFSKKTILKENFFIENLSNIELDVTVELIPSYISKHTFDNL 261
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCE 288
+ G VI + K I+ +
Sbjct: 262 REGDVITIEDP--GKVTVCIEKKPIFLGK 288
>gi|304404257|ref|ZP_07385919.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus curdlanolyticus YK9]
gi|304347235|gb|EFM13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus curdlanolyticus YK9]
Length = 411
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/311 (10%), Positives = 81/311 (26%), Gaps = 45/311 (14%)
Query: 21 LTGKLGD--KKTIEKI-SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKF--SH 72
+ G G+ + +I S++ + + + V+IS
Sbjct: 125 MLGGEGEVMPAELNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGINILDVENGD 184
Query: 73 IIHSFKENFVFSQASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+++ + VF S + ++ L+G E +
Sbjct: 185 GVNTLPDEDVFINVSFRLMIGDLIDSTIMQLLPVSFAKQMVATLMGGMDEPAAPAPVAAA 244
Query: 128 STVEKKLAKRTIAQISAV------LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
A ++ A + + P + N
Sbjct: 245 VETAAPAAPAQVSAPPAAAYTPPPMQEA-PPMYAQQPMYAQQPMYAQPPQGPN------- 296
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
T V + + + +L + +
Sbjct: 297 -------TYGQVPGR------NVNVQPVQFANFQGAPYVQADDTNL-----NLLLDIPLK 338
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + + +KD++ L G +I + N K I E+ + +N+ +R+T
Sbjct: 339 VTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDENFGVRVT 398
Query: 302 DRINFDQKSLK 312
D ++ + K
Sbjct: 399 DIVSQWDRMQK 409
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/218 (10%), Positives = 67/218 (30%), Gaps = 3/218 (1%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYT 63
QS +T + P + + +G + + VDI+
Sbjct: 18 QSSDDDTDSVAPSAETAVIAD-FLNNIEQDALGEIGNITFGSAATALSTLLGKKVDITTP 76
Query: 64 SCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL 122
K S + F + S + + + + + + +LG E +P
Sbjct: 77 QVTLVKRSELKDVFPKPHVAVSVQYVDGFQGINSLVIKTHDAQVIADLMLGGEGEVMPAE 136
Query: 123 YNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVT 182
N + ++ + + + ++ + SP + D++ +
Sbjct: 137 LNEIHISAVQEAMNQMMGSSATSMSTIFNRFVNISPPGINILDVENGDGVNTLPDEDVFI 196
Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNK 219
++ + I + + S+ + ++P + + ++
Sbjct: 197 NVSFRLMIGDLIDSTIMQLLPVSFAKQMVATLMGGMDE 234
>gi|86157790|ref|YP_464575.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774301|gb|ABC81138.1| flagellar motor switch FliN [Anaeromyxobacter dehalogenans 2CP-C]
Length = 97
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
++ D + + ++ + + T++D++ L G VI
Sbjct: 1 MEAQTPRNGDSTRRL-DLLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLD 59
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG+ + E V + +RITD ++ ++
Sbjct: 60 ILVNGRLVARGEAVVVNDKFGVRITDIVSPQERI 93
>gi|308061769|gb|ADO03657.1| flagellar motor switch protein FliY [Helicobacter pylori Cuz20]
Length = 290
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 94/286 (32%), Gaps = 26/286 (9%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVIT 106
+ + + S +++ S+ + LV
Sbjct: 14 STLEGLVGKAPSVGLEKEVSNSEESWESLISVPYARVVISAIEKEESSIELLAPVVLVTA 73
Query: 107 LLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI 166
L + +LG + ++ N L ++ +A I+ L QE P L +
Sbjct: 74 LSDLMLGGEGASKEEMDNDDLDAFKE-MASNIFGAIATSLKS-----QELLPKLN--FTT 125
Query: 167 DYLKKNTNRLSNEFVT-TINMNMTIENVASSFVLIIPQETLLK------------TTLIS 213
+ E + + +E + S ++++ + +
Sbjct: 126 INAEIAKELPKKEDYAKMMVFSFKMEALKESQIILLTTAVFERQFEKTHQEEKEEKEETT 185
Query: 214 LSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
S+ + + L + R + +N+ RI KK LKDVV++ IG V+
Sbjct: 186 KSAAEEVKTHDASLENIEIRNISMLLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQL 245
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ + K I E+ V N+ I+ITD I ++ L+ H
Sbjct: 246 VNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKH 290
>gi|325509630|gb|ADZ21266.1| flagellar motor switch protein [Clostridium acetobutylicum EA 2018]
Length = 395
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + K +KD++ L G +I + + NGK++ E+ V
Sbjct: 313 DLILDVPLEISVVLGRAKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKKVAYGEVVVV 372
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT +N +++
Sbjct: 373 DENFGVRITSIVNSEERI 390
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/201 (11%), Positives = 59/201 (29%), Gaps = 2/201 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ + +G + + V+I+ + +F+ +S
Sbjct: 43 KDLLGEIGNISMGSASTALSTIIGQKVNITTPIVSVTTLETLKKNFEVPNVALDVKYVSG 102
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
S + + ++G + + + + + + I + + +
Sbjct: 103 ISGENLLVMKVTDAAVIANLMMGGDGKVESKTLSEIELSAVSEAMNQMIGSAATSMATML 162
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
SP + +D N +E + + +TI + V S + I+P +T K
Sbjct: 163 LREVNISPPVSKIWDSKTDVLTDNIKEDENIVQVAFKLTIGDLVDSQIMQILPIDTSRKM 222
Query: 210 TLISLSSQNKSENQSEDLIDP 230
I + + E
Sbjct: 223 IDIMMGGSSNKEEPEVQQSAA 243
>gi|310641556|ref|YP_003946314.1| chec, inhibitor of mcp methylation / flin fusion protein
[Paenibacillus polymyxa SC2]
gi|309246506|gb|ADO56073.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus polymyxa SC2]
Length = 437
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + +KD++ L G +I + N K I E+ +
Sbjct: 356 NLLMDIPLRVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDIMVNNKLIAKGEVVVI 415
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD ++ + K
Sbjct: 416 DENFGVRVTDIVSQWDRIQK 435
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/225 (10%), Positives = 65/225 (28%), Gaps = 5/225 (2%)
Query: 1 MRGQSIH---KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD 57
+ + I K + A T + +G + +
Sbjct: 7 LSQEEIDALLKQSEAGTDSTPAGKTVDDFLTSLEQDALGEIGNITFGSAATALSTLLGQK 66
Query: 58 VDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH 116
VDI+ S +F + + + + + + +LG
Sbjct: 67 VDITTPKVSIITRSEFETAFPKPHVAVHVNYVDGFEGINSLVIKKRDAQVIADLMLGGEG 126
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
+ N + ++ + + + ++ + SP D D + ++
Sbjct: 127 NPADEELNEIHISAVQEAMNQMMGSSATSMSTMFNRFVNISPPGIDILDPLHGDGVSSLP 186
Query: 177 SNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKS 220
E + T++ + I + + S+ + ++P K I ++
Sbjct: 187 DEETLITVSFRLLIGDLIDSTLMQLLPVNFAKKMVSILMNGGEDD 231
>gi|226944504|ref|YP_002799577.1| flagellar motor switch protein [Azotobacter vinelandii DJ]
gi|226719431|gb|ACO78602.1| Flagellar motor switch protein [Azotobacter vinelandii DJ]
Length = 155
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K ++ L G V+ + NG I E+ V
Sbjct: 73 DMIMDIPVKLSVELGRTRITIKQLLELAQGSVVELDGLAGEPMDILINGYLIAQGEVVVV 132
Query: 293 GKNYTIRITDRINFDQKSLK 312
Y IRIT+ I ++ K
Sbjct: 133 DDKYGIRITEIITPSERVQK 152
>gi|119384526|ref|YP_915582.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
gi|119374293|gb|ABL69886.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
Length = 392
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/260 (11%), Positives = 77/260 (29%), Gaps = 13/260 (5%)
Query: 55 DLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGA 114
L V + + + E + + + + +L+ L+E
Sbjct: 74 GLPVFVEKVERAGMVLAELPELLPERALLAVVGGRR-DALGVVAICPDLLAALIEMQAIG 132
Query: 115 SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ--CISTTQESSPNLEDFYDIDYLKKN 172
+ P R + + ++ + + A L + +D +
Sbjct: 133 RVTSRPAPPRRP-TRTDAAISADFVNALLAELGRECAARDGCPDFGAYRYATFMDDPRPL 191
Query: 173 TNRLSNEFVTTINMNMTIE---NVASSFVLIIPQETLLKT--TLISLSSQNK---SENQS 224
+ L + +T ++ I ++ +P +Q++ + +
Sbjct: 192 SLLLEDGEMTRLDFRFRIGTGGQRDGRLMIALPARVGAPPDAVPAIAGNQSRLPVAPSAD 251
Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKE 283
+ A + + + + ++ +L + L G ++P A L G+
Sbjct: 252 PPVAPSLAEAVQEAPIRLAGILCRRRLSLHQLRGLATGSLLPLPQNVLDEARLETPQGQL 311
Query: 284 IYSCELGRVGKNYTIRITDR 303
+ LG + IR+ D
Sbjct: 312 LARGRLGEKDGFHAIRLRDI 331
>gi|294636878|ref|ZP_06715208.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
gi|291089908|gb|EFE22469.1| flagellar motor switch protein FliN [Edwardsiella tarda ATCC 23685]
Length = 137
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDVLINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 115 NDKFGVRITDIITPSERM 132
>gi|306820128|ref|ZP_07453776.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551906|gb|EFM39849.1| flagellar motor switch phosphatase FliY [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 416
Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/306 (11%), Positives = 81/306 (26%), Gaps = 35/306 (11%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFL-------PKIFKEKMDLDVDISYTSCQSGKF--S 71
+ G G E ++ + + E + +DI+ F
Sbjct: 127 MLGGDGVSDLPEDLTEMHLSAISEAMNQMMGAASTSLSEMLGGKIDITPPKVSRVNFKGD 186
Query: 72 HIIHSFKENF---VFSQASLS---SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNR 125
+ + + + + S L++ ++G + + +
Sbjct: 187 RLDPDIIDPAQEIMCTSFRMRVGNLIDSEIMQILPIEFARKLIDKIMGNTGVSEEVVEQE 246
Query: 126 SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTIN 185
+ E+ Q + P E + +
Sbjct: 247 APPVQEQ-------------------PQQAAPPIQEVPQAPPVMPPQEQYQAPPPQYYQA 287
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQN-KSENQSEDLIDPFARKTYQLNVNIDT 244
+ + + + S S + + + I
Sbjct: 288 PPPQYYQAPPMPMQYEQMPSQQSVRVQQAQFSSFDSLAMSNIQVPENMDLIKDVMLQITV 347
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ + +++ K G V+ + ANGK+I + E+ + +NY IRITD +
Sbjct: 348 ELGKTVKPINEILDFKPGSVLELDKVVGESLDILANGKKIATGEVVVIDENYGIRITDIV 407
Query: 305 NFDQKS 310
D++
Sbjct: 408 KPDKRL 413
>gi|74101638|gb|AAZ99728.1| FliML [Aeromonas hydrophila]
Length = 291
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/307 (10%), Positives = 81/307 (26%), Gaps = 43/307 (14%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
K + + R K + + + ++F C+
Sbjct: 20 KTLPHYDLLGVER--ADREQLKQVNAQLGTFSLQAAGCMAQLFNS----------ADCE- 66
Query: 68 GKFSHIIH--SFKENFVFSQASLS-SWSSN--FFIGCSNNLVITLLENLLGASHETIPQL 122
+ I S +++ + + S +++ L G S +
Sbjct: 67 LTYQEFIAVSSPEDDDGLIWIEARSPLDTQRVVYFSISPSVIYRLAVLFFGGSLRNQEET 126
Query: 123 YN--RSLSTVEKKLAKRTIAQISAVLNQCIS-TTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + L+ E++L R + + C+ E L + +
Sbjct: 127 VSHSKGLTDTEQRLVLRLCQYQVDIWSSCLGLGDLEWQLTLITCDALPVSRL-------- 178
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
++ + + + L+ P +T + + +
Sbjct: 179 WMAAATLTVGSFSHGWQLWLVPPA---ERTGPAVGHTLQD---------GALEQALAHIP 226
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + TL D+ LK+G V+ E A + +S + + +
Sbjct: 227 ARLRVVMGQLSMTLADLECLKVGDVLSLDLPEVVPA--LIGNRPCFSGRIAEHKGSLVYQ 284
Query: 300 ITDRINF 306
+ +
Sbjct: 285 VATVVEE 291
>gi|313620056|gb|EFR91570.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
Length = 398
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 116 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 174
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 175 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 234
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 235 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 294
Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
+ ++ + + + V ++ K L+ ++
Sbjct: 295 EATPVEIMAHETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 354
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 355 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 398
>gi|16799783|ref|NP_470051.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|16413160|emb|CAC95940.1| lin0708 [Listeria innocua Clip11262]
Length = 513
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATPVEIKEHETKEPAQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 469
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 513
>gi|317121826|ref|YP_004101829.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
DSM 12885]
gi|315591806|gb|ADU51102.1| flagellar motor switch protein FliN [Thermaerobacter marianensis
DSM 12885]
Length = 287
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 35/78 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + T+++++ + G V+ L NG+ I E+ +
Sbjct: 206 DLVLDVPLQLTVELGQTQRTVREILEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVI 265
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ IRITD ++ ++
Sbjct: 266 DENFGIRITDIVSPGERL 283
>gi|197122896|ref|YP_002134847.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
gi|220917688|ref|YP_002492992.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
2CP-1]
gi|196172745|gb|ACG73718.1| flagellar motor switch protein FliN [Anaeromyxobacter sp. K]
gi|219955542|gb|ACL65926.1| flagellar motor switch protein FliN [Anaeromyxobacter dehalogenans
2CP-1]
Length = 97
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
++ D + + ++ + + T++D++ L G VI
Sbjct: 1 MEAQTPRNGDSTRRL-DMLLDVPLEVNVELGRTRMTIQDLLQLAPGSVIELDKVAGEPLD 59
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG+ + E V + +RITD ++ ++
Sbjct: 60 ILVNGRLVARGEAVVVNDKFGVRITDIVSPQERI 93
>gi|253573531|ref|ZP_04850874.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
786 str. D14]
gi|251847059|gb|EES75064.1| flagellar motor switch protein FliN [Paenibacillus sp. oral taxon
786 str. D14]
Length = 415
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + +KD++ L G +I + N K I E+ +
Sbjct: 334 NLLMDIPLKVTVELGRTQRQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVI 393
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD ++ + K
Sbjct: 394 DENFGVRVTDIVSQWDRIQK 413
Score = 73.5 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/194 (9%), Positives = 60/194 (30%), Gaps = 2/194 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ VDI+ S F + +
Sbjct: 38 QDALGEIGNITFGSAATALSTLLNKKVDITTPKVSVITRSQFEAEFPKPHVAIHVQYVDG 97
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + + N + ++ + + + ++
Sbjct: 98 FEGMNSLVIKTRDAQVIADLMLGGEGDPAEEELNEIHISAVQEAMNQMMGSSATSMSTIF 157
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D ++ ++ ++ + I+ +TI + + S+ + ++ + +
Sbjct: 158 NRFVNISPPGVDILNMSNGNGLSSLPESDPLIKISFRLTIGDLIDSTIMQLLTVKFAKEM 217
Query: 210 TLISLSSQNKSENQ 223
+S N
Sbjct: 218 VDSLISGSTAETNA 231
>gi|269792931|ref|YP_003317835.1| flagellar motor switch protein FliN [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100566|gb|ACZ19553.1| flagellar motor switch protein FliN [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 375
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + + T+ +++ + G V+ + NGK I E+ +
Sbjct: 293 DLISDIPVRITVELGRTRKTIGEILNMSPGSVVELNRMAGEPVDVLVNGKLIARGEVVVI 352
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +R+T+ ++ ++
Sbjct: 353 DENFGVRVTEIVSRAERI 370
>gi|26248215|ref|NP_754255.1| flagellar motor switch protein FliN [Escherichia coli CFT073]
gi|227885625|ref|ZP_04003430.1| flagellar motor switch protein FliN [Escherichia coli 83972]
gi|300975539|ref|ZP_07173050.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
gi|301050693|ref|ZP_07197554.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
gi|26108619|gb|AAN80822.1|AE016762_75 Flagellar motor switch protein fliN [Escherichia coli CFT073]
gi|227837198|gb|EEJ47664.1| flagellar motor switch protein FliN [Escherichia coli 83972]
gi|300297616|gb|EFJ54001.1| flagellar motor switch protein FliN [Escherichia coli MS 185-1]
gi|300410308|gb|EFJ93846.1| flagellar motor switch protein FliN [Escherichia coli MS 45-1]
gi|307553959|gb|ADN46734.1| flagellar motor switch protein FliN [Escherichia coli ABU 83972]
gi|315290263|gb|EFU49641.1| flagellar motor switch protein FliN [Escherichia coli MS 153-1]
Length = 137
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|323168933|gb|EFZ54613.1| flagellar motor switch protein fliN [Shigella sonnei 53G]
gi|323180801|gb|EFZ66341.1| flagellar motor switch protein fliN [Escherichia coli 1180]
gi|323183930|gb|EFZ69317.1| flagellar motor switch protein fliN [Escherichia coli 1357]
Length = 134
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 112 ADKYGVRITDIITPSERM 129
>gi|213616270|ref|ZP_03372096.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 134
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 112 ADKYGVRITDIITPSERM 129
>gi|284007162|emb|CBA72445.1| flagellar motor switch protein FliN [Arsenophonus nasoniae]
Length = 139
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K T+K ++ L G V+ + NG I E+ V
Sbjct: 59 IMDIPVKLTVELGRTKMTIKKLLNLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSD 118
Query: 295 NYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 119 KYGIRITDIITPSERM 134
>gi|73532542|dbj|BAE19829.1| flagellar motor switch protein [Edwardsiella tarda]
Length = 134
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDVLINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 112 NDKFGVRITDIITPSERM 129
>gi|110642052|ref|YP_669782.1| flagellar motor switch protein FliN [Escherichia coli 536]
gi|191173317|ref|ZP_03034847.1| flagellar motor switch protein FliN [Escherichia coli F11]
gi|215487146|ref|YP_002329577.1| flagellar motor switch protein FliN [Escherichia coli O127:H6 str.
E2348/69]
gi|218699493|ref|YP_002407122.1| flagellar motor switch protein FliN [Escherichia coli IAI39]
gi|218705439|ref|YP_002412958.1| flagellar motor switch protein FliN [Escherichia coli UMN026]
gi|293405429|ref|ZP_06649421.1| fliN [Escherichia coli FVEC1412]
gi|293410302|ref|ZP_06653878.1| fliN [Escherichia coli B354]
gi|298381073|ref|ZP_06990672.1| flagellar motor switch protein FliN/FliY [Escherichia coli
FVEC1302]
gi|300899203|ref|ZP_07117479.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
gi|300994269|ref|ZP_07180821.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
gi|306814231|ref|ZP_07448397.1| flagellar motor switch protein FliN [Escherichia coli NC101]
gi|312967143|ref|ZP_07781361.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
gi|110343644|gb|ABG69881.1| flagellar motor switch protein FliN [Escherichia coli 536]
gi|190906434|gb|EDV66043.1| flagellar motor switch protein FliN [Escherichia coli F11]
gi|215265218|emb|CAS09608.1| flagellar motor switching and energizing component FliN
[Escherichia coli O127:H6 str. E2348/69]
gi|218369479|emb|CAR17244.1| flagellar motor switching and energizing component [Escherichia
coli IAI39]
gi|218432536|emb|CAR13429.1| flagellar motor switching and energizing component [Escherichia
coli UMN026]
gi|222033685|emb|CAP76426.1| flagellar motor switch protein fliN [Escherichia coli LF82]
gi|291427637|gb|EFF00664.1| fliN [Escherichia coli FVEC1412]
gi|291470770|gb|EFF13254.1| fliN [Escherichia coli B354]
gi|298278515|gb|EFI20029.1| flagellar motor switch protein FliN/FliY [Escherichia coli
FVEC1302]
gi|300304934|gb|EFJ59454.1| flagellar motor switch protein FliN [Escherichia coli MS 200-1]
gi|300357184|gb|EFJ73054.1| flagellar motor switch protein FliN [Escherichia coli MS 198-1]
gi|305852390|gb|EFM52841.1| flagellar motor switch protein FliN [Escherichia coli NC101]
gi|312288607|gb|EFR16509.1| flagellar motor switch protein fliN [Escherichia coli 2362-75]
gi|312946539|gb|ADR27366.1| flagellar motor switch protein FliN [Escherichia coli O83:H1 str.
NRG 857C]
gi|315296480|gb|EFU55777.1| flagellar motor switch protein FliN [Escherichia coli MS 16-3]
gi|320194341|gb|EFW68972.1| Flagellar motor switch protein FliN [Escherichia coli WV_060327]
gi|324005855|gb|EGB75074.1| flagellar motor switch protein FliN [Escherichia coli MS 57-2]
gi|324013501|gb|EGB82720.1| flagellar motor switch protein FliN [Escherichia coli MS 60-1]
Length = 137
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|170019721|ref|YP_001724675.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
gi|169754649|gb|ACA77348.1| flagellar motor switch protein FliN [Escherichia coli ATCC 8739]
Length = 137
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|157157681|ref|YP_001463248.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
gi|170683738|ref|YP_001743299.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
gi|157079711|gb|ABV19419.1| flagellar motor switch protein FliN [Escherichia coli E24377A]
gi|170521456|gb|ACB19634.1| flagellar motor switch protein FliN [Escherichia coli SMS-3-5]
Length = 137
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|317051534|ref|YP_004112650.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
gi|316946618|gb|ADU66094.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
Length = 330
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/329 (10%), Positives = 92/329 (27%), Gaps = 43/329 (13%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
+ +GD + S + L ++ +++ + + +
Sbjct: 1 MLNMVGDSEDDGPDLSDFSRIVVSNLSSSMGTSINNPLEMQVAGEGMVS-GDALGAEPQV 59
Query: 81 FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
+ + F+ ++ ++ ++ + L L + +
Sbjct: 60 ILSRVPFEEGATGTMFLVAPISMASIFVDLMMMGEGTAKDSMEEDDLDAYS-DLLNTSFS 118
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI-ENVASSFVL 199
LN+ + D + L +E + + +++ V + L
Sbjct: 119 SCVVPLNEAAQGV-KFRFASVSSSVFDQDSLAS-ALGDESLYRLEISVNAPGKVDGTLQL 176
Query: 200 IIPQETLLKTTLISLSSQNKSENQS----------------------------------- 224
+IPQ + + ++ S+
Sbjct: 177 LIPQTLAQEISSAFSEQESASDGDDLFDFSDVDLENLAADDSSADFGGFDSGGGGGGAGS 236
Query: 225 -EDLIDPFA--RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ +++ + RI K LKD++ L G ++ + L N
Sbjct: 237 SSLNKEQMRNIEMLLDIDLAVIIRIGSTKIYLKDLLKLGSGSIVELDKKAGDPVELVVNK 296
Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQKS 310
K I E+ + N+ +RI + ++ +
Sbjct: 297 KVIARGEVVVIDANFGLRINEILSKRDRL 325
>gi|188534128|ref|YP_001907925.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
gi|188029170|emb|CAO97042.1| Flagellar motor switch protein [Erwinia tasmaniensis Et1/99]
Length = 133
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 111 ADKYGVRITDIITPSERM 128
>gi|163783162|ref|ZP_02178156.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
gi|159881496|gb|EDP75006.1| flagellar motor switch FliN [Hydrogenivirga sp. 128-5-R1-1]
Length = 164
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 43/101 (42%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
Q + +E I + + +N++ + +++++ L G V+
Sbjct: 53 EAPPQEQVAEKKVTERDITKLLDRLMDIPLNVEVVVGETVIQIRELINLGPGSVLELDRE 112
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
+ NGK I EL VG+ + +RIT+ + ++KS+
Sbjct: 113 TTEPVDIKVNGKLIAKGELVVVGEKFGVRITEIYSEERKSV 153
>gi|323968362|gb|EGB63769.1| flagellar motor switch protein FliN [Escherichia coli M863]
gi|323977873|gb|EGB72959.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
gi|327253078|gb|EGE64732.1| flagellar motor switch protein fliN [Escherichia coli STEC_7v]
Length = 137
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|283478742|emb|CAY74658.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
Length = 138
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 ADKYGVRITDIITPTERM 133
>gi|167750715|ref|ZP_02422842.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
gi|167656394|gb|EDS00524.1| hypothetical protein EUBSIR_01693 [Eubacterium siraeum DSM 15702]
Length = 419
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/309 (10%), Positives = 81/309 (26%), Gaps = 30/309 (9%)
Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFV 82
D+ I +S + E + + +DIS + + + ++++ +
Sbjct: 105 FDELNISAVSEVMNQ-MMGASSTALSEFLGMGIDISTPTPYILSEINIAD-LQNYEQTDM 162
Query: 83 FSQASLSSW-----SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ + S F +L TL + ++G + P + +
Sbjct: 163 VAAINFDLTIDGVIKSEFISVLDIDLAATLADRMIGGATSPEPIATEPAPAPAPAPQPVP 222
Query: 138 TIAQISAVL----------NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
+ + + + V +M
Sbjct: 223 QAEPVPQAATVQQAAPVQQATPMPQVAPVQQAAAPVPQATPMPQVAPVPQVAPVPQADMY 282
Query: 188 MTIENVASSFVLII---------PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
+ PQ + +N + + +
Sbjct: 283 AQQGYYGYPNPAMYGQPVQPVMQPQPAVNYRNAQLAQFENFEAPLGSEQKENLQ-LLMDV 341
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ I I K +KD++ G +I + + NG I ++ + N+ +
Sbjct: 342 PLQISVEIGSTKKKIKDILEFSQGTIIELERQAGAPVDVMVNGNLIARGDVVVIDDNFAV 401
Query: 299 RITDRINFD 307
RIT+ +
Sbjct: 402 RITEIVKSK 410
>gi|91211164|ref|YP_541150.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
gi|117624086|ref|YP_852999.1| flagellar motor switch protein FliN [Escherichia coli APEC O1]
gi|218558803|ref|YP_002391716.1| flagellar motor switch protein FliN [Escherichia coli S88]
gi|237705905|ref|ZP_04536386.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
gi|300940401|ref|ZP_07154986.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
gi|91072738|gb|ABE07619.1| flagellar motor switch protein FliN [Escherichia coli UTI89]
gi|115513210|gb|ABJ01285.1| Flagellar motor switch protein [Escherichia coli APEC O1]
gi|218365572|emb|CAR03299.1| flagellar motor switching and energizing component [Escherichia
coli S88]
gi|226900662|gb|EEH86921.1| flagellar motor switch protein FliN [Escherichia sp. 3_2_53FAA]
gi|294492168|gb|ADE90924.1| flagellar motor switch protein FliN [Escherichia coli IHE3034]
gi|300454795|gb|EFK18288.1| flagellar motor switch protein FliN [Escherichia coli MS 21-1]
gi|307626578|gb|ADN70882.1| flagellar motor switch protein FliN [Escherichia coli UM146]
gi|315286658|gb|EFU46091.1| flagellar motor switch protein FliN [Escherichia coli MS 110-3]
gi|323952439|gb|EGB48312.1| flagellar motor switch protein FliN [Escherichia coli H252]
gi|323956342|gb|EGB52085.1| flagellar motor switch protein FliN [Escherichia coli H263]
Length = 137
Score = 81.6 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|320538200|ref|ZP_08038095.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
gi|320145017|gb|EFW36738.1| flagellar motor switch protein FliN [Treponema phagedenis F0421]
Length = 377
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + +KD++ + G +I + N K I E+ + +
Sbjct: 299 IMDVYMEVTVELGRTRMIIKDILGMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 358
Query: 295 NYTIRITDRINFDQKSLK 312
N+ +R+T+ ++ ++
Sbjct: 359 NFGVRVTEILSPVERIAD 376
>gi|293415256|ref|ZP_06657899.1| fliN [Escherichia coli B185]
gi|291432904|gb|EFF05883.1| fliN [Escherichia coli B185]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|329298602|ref|ZP_08255938.1| FliN [Plautia stali symbiont]
Length = 136
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 54 DLIMDIPVKLTVELGRTKMTIKELLRLTQGLVVALDGPAGEPLDILINGYLIAQGEVVVV 113
Query: 293 GKNYTIRITDRINFDQ 308
Y +RITD I +
Sbjct: 114 NDKYGVRITDIITPSE 129
>gi|261340411|ref|ZP_05968269.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
35316]
gi|288317503|gb|EFC56441.1| flagellar motor switch protein FliN [Enterobacter cancerogenus ATCC
35316]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|224583524|ref|YP_002637322.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224468051|gb|ACN45881.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|326622857|gb|EGE29202.1| flagellar motor switch protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 134
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 112 ADKYGVRITDIITPSERM 129
>gi|157145260|ref|YP_001452579.1| flagellar motor switch protein FliN [Citrobacter koseri ATCC
BAA-895]
gi|157082465|gb|ABV12143.1| hypothetical protein CKO_00997 [Citrobacter koseri ATCC BAA-895]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|313624702|gb|EFR94658.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
Length = 398
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/284 (9%), Positives = 83/284 (29%), Gaps = 26/284 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 116 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 174
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 175 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 234
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 235 NFGDTMIQKNIAEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 294
Query: 223 ---------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
+ ++ + + + V ++ K L+ ++
Sbjct: 295 EATPVEIMEHETKEPEQPVVMEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCE 354
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 355 KDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 398
>gi|331647540|ref|ZP_08348632.1| flagellar motor switch protein FliN [Escherichia coli M605]
gi|331657992|ref|ZP_08358954.1| flagellar motor switch protein FliN [Escherichia coli TA206]
gi|281179008|dbj|BAI55338.1| flagellar motor switch protein FliN [Escherichia coli SE15]
gi|330911752|gb|EGH40262.1| flagellar motor switch protein FliN [Escherichia coli AA86]
gi|331043264|gb|EGI15402.1| flagellar motor switch protein FliN [Escherichia coli M605]
gi|331056240|gb|EGI28249.1| flagellar motor switch protein FliN [Escherichia coli TA206]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|22126367|ref|NP_669790.1| flagellar motor switch protein FliN [Yersinia pestis KIM 10]
gi|45441388|ref|NP_992927.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Microtus str. 91001]
gi|108807194|ref|YP_651110.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
gi|108812462|ref|YP_648229.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|149366230|ref|ZP_01888265.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
gi|165925955|ref|ZP_02221787.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938705|ref|ZP_02227260.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010928|ref|ZP_02231826.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211127|ref|ZP_02237162.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401081|ref|ZP_02306584.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419987|ref|ZP_02311740.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425771|ref|ZP_02317524.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467511|ref|ZP_02332215.1| flagellar motor switch protein FliN [Yersinia pestis FV-1]
gi|218928943|ref|YP_002346818.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
gi|229896267|ref|ZP_04511437.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
gi|229897204|ref|ZP_04512360.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229897931|ref|ZP_04513082.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902838|ref|ZP_04517955.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|270486624|ref|ZP_06203698.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|21959352|gb|AAM86041.1|AE013852_3 flagellar motor switch protein [Yersinia pestis KIM 10]
gi|45436248|gb|AAS61804.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Microtus str. 91001]
gi|108776110|gb|ABG18629.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|108779107|gb|ABG13165.1| flagellar motor switch protein FliN [Yersinia pestis Antiqua]
gi|115347554|emb|CAL20463.1| flagellar motor switch protein FliN [Yersinia pestis CO92]
gi|149292643|gb|EDM42717.1| flagellar motor switch protein FliN [Yersinia pestis CA88-4125]
gi|165913319|gb|EDR31941.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922159|gb|EDR39336.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990272|gb|EDR42573.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166208307|gb|EDR52787.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961682|gb|EDR57703.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049470|gb|EDR60878.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055170|gb|EDR64967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229680285|gb|EEO76384.1| flagellar motor switch protein FliN [Yersinia pestis Nepal516]
gi|229688972|gb|EEO81037.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229693541|gb|EEO83590.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701190|gb|EEO89219.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides A]
gi|262361803|gb|ACY58524.1| flagellar motor switch protein [Yersinia pestis D106004]
gi|262366061|gb|ACY62618.1| flagellar motor switch protein [Yersinia pestis D182038]
gi|270335128|gb|EFA45905.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|320015440|gb|ADV99011.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 138
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 ADKYGVRITDIITSSERM 133
>gi|310767336|gb|ADP12286.1| Flagellar motor switch protein [Erwinia sp. Ejp617]
Length = 133
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 111 ADKYGVRITDIITPTERM 128
>gi|259908766|ref|YP_002649122.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
gi|224964388|emb|CAX55897.1| Flagellar motor switch protein [Erwinia pyrifoliae Ep1/96]
Length = 133
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 111 ADKYGVRITDIITPTERM 128
>gi|311279112|ref|YP_003941343.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
gi|308748307|gb|ADO48059.1| flagellar motor switch protein FliN [Enterobacter cloacae SCF1]
Length = 136
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 54 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 114 ADKYGVRITDIITPSERM 131
>gi|38639350|gb|AAR25816.1| BcscQ [Burkholderia multivorans E243]
Length = 383
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/291 (14%), Positives = 75/291 (25%), Gaps = 19/291 (6%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
L P+ G D I ++L L + V++ + H
Sbjct: 100 LDPLAETEWLGDAADPAVPAVIRAALLADLGAPLAATLQAATRQRVEL-LPPAEPAPAWH 158
Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
F W + + + + AS P + +
Sbjct: 159 AS---PAALRFELRRADGAWRCHGALLFDGPDALAV----FFASAPAAPPDAAALYANLP 211
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
LA +E + + + I
Sbjct: 212 VPLAFELGRTALTAAELA-DVVAGDIIAIEHWRAHEQDLLCVAYVRAAPAWEITGRPAGN 270
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ + +P L S S+ ++ R L V++ +
Sbjct: 271 RLTVQRIREMP---LEPPRTDSASAAAPDAPPADT-----PRSLDGLAVDLRFELPPTSM 322
Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ TL+ G VI H L ANG I + +L VG+ +R+
Sbjct: 323 PLGELGTLQPGAVIELSHGINQSVIHLVANGMLIGTGQLIAVGQKLGVRVV 373
>gi|15802381|ref|NP_288407.1| flagellar motor switch protein FliN [Escherichia coli O157:H7
EDL933]
gi|15831939|ref|NP_310712.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
Sakai]
gi|157161417|ref|YP_001458735.1| flagellar motor switch protein FliN [Escherichia coli HS]
gi|168751875|ref|ZP_02776897.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4113]
gi|168758260|ref|ZP_02783267.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4401]
gi|168764428|ref|ZP_02789435.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4501]
gi|168771553|ref|ZP_02796560.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4486]
gi|168777373|ref|ZP_02802380.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4196]
gi|168783343|ref|ZP_02808350.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4076]
gi|168790294|ref|ZP_02815301.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC869]
gi|168802293|ref|ZP_02827300.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC508]
gi|187733157|ref|YP_001879725.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
gi|188494569|ref|ZP_03001839.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|191168299|ref|ZP_03030092.1| flagellar motor switch protein FliN [Escherichia coli B7A]
gi|193066369|ref|ZP_03047417.1| flagellar motor switch protein FliN [Escherichia coli E22]
gi|193071147|ref|ZP_03052071.1| flagellar motor switch protein FliN [Escherichia coli E110019]
gi|194429933|ref|ZP_03062443.1| flagellar motor switch protein FliN [Escherichia coli B171]
gi|194439600|ref|ZP_03071673.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
gi|195939252|ref|ZP_03084634.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4024]
gi|208810634|ref|ZP_03252510.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4206]
gi|208816753|ref|ZP_03257873.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4045]
gi|208820410|ref|ZP_03260730.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4042]
gi|209396964|ref|YP_002271062.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4115]
gi|209919368|ref|YP_002293452.1| flagellar motor switch protein FliN [Escherichia coli SE11]
gi|217328626|ref|ZP_03444707.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14588]
gi|218554526|ref|YP_002387439.1| flagellar motor switch protein FliN [Escherichia coli IAI1]
gi|218689941|ref|YP_002398153.1| flagellar motor switch protein FliN [Escherichia coli ED1a]
gi|218695551|ref|YP_002403218.1| flagellar motor switch protein FliN [Escherichia coli 55989]
gi|254793596|ref|YP_003078433.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14359]
gi|256017861|ref|ZP_05431726.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|256022396|ref|ZP_05436261.1| flagellar motor switch protein FliN [Escherichia sp. 4_1_40B]
gi|260844345|ref|YP_003222123.1| flagellar motor switching and energizing component FliN
[Escherichia coli O103:H2 str. 12009]
gi|260855921|ref|YP_003229812.1| flagellar motor switching and energizing component FliN
[Escherichia coli O26:H11 str. 11368]
gi|260868539|ref|YP_003234941.1| flagellar motor switching and energizing component FliN
[Escherichia coli O111:H- str. 11128]
gi|261227559|ref|ZP_05941840.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. FRIK2000]
gi|261254617|ref|ZP_05947150.1| flagellar motor switching and energizing component FliN
[Escherichia coli O157:H7 str. FRIK966]
gi|291283123|ref|YP_003499941.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
CB9615]
gi|293446326|ref|ZP_06662748.1| fliN [Escherichia coli B088]
gi|300818634|ref|ZP_07098842.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
gi|300822284|ref|ZP_07102425.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
gi|300904836|ref|ZP_07122662.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
gi|300920165|ref|ZP_07136615.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
gi|300931159|ref|ZP_07146506.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
gi|300951571|ref|ZP_07165404.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
gi|300956538|ref|ZP_07168820.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
gi|301018204|ref|ZP_07182719.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
gi|301029403|ref|ZP_07192497.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
gi|301305289|ref|ZP_07211386.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
gi|301327733|ref|ZP_07220938.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
gi|301644595|ref|ZP_07244584.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
gi|307138613|ref|ZP_07497969.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|307312468|ref|ZP_07592102.1| flagellar motor switch protein FliN [Escherichia coli W]
gi|309795947|ref|ZP_07690360.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
gi|331642567|ref|ZP_08343702.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|331663442|ref|ZP_08364352.1| flagellar motor switch protein FliN [Escherichia coli TA143]
gi|331668637|ref|ZP_08369485.1| flagellar motor switch protein FliN [Escherichia coli TA271]
gi|331673459|ref|ZP_08374227.1| flagellar motor switch protein FliN [Escherichia coli TA280]
gi|331677828|ref|ZP_08378503.1| flagellar motor switch protein FliN [Escherichia coli H591]
gi|331683498|ref|ZP_08384099.1| flagellar motor switch protein FliN [Escherichia coli H299]
gi|332278887|ref|ZP_08391300.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|12516053|gb|AAG56961.1|AE005417_3 flagellar biosynthesis, component of motor switch and energizing,
enabling rotation and determining its direction
[Escherichia coli O157:H7 str. EDL933]
gi|13362153|dbj|BAB36108.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
Sakai]
gi|157067097|gb|ABV06352.1| flagellar motor switch protein FliN [Escherichia coli HS]
gi|187430149|gb|ACD09423.1| flagellar motor switch protein FliN [Shigella boydii CDC 3083-94]
gi|187767381|gb|EDU31225.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4196]
gi|188014151|gb|EDU52273.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4113]
gi|188489768|gb|EDU64871.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|188999311|gb|EDU68297.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4076]
gi|189354897|gb|EDU73316.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4401]
gi|189359711|gb|EDU78130.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4486]
gi|189365572|gb|EDU83988.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4501]
gi|189370215|gb|EDU88631.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC869]
gi|189375725|gb|EDU94141.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC508]
gi|190901671|gb|EDV61427.1| flagellar motor switch protein FliN [Escherichia coli B7A]
gi|192925954|gb|EDV80600.1| flagellar motor switch protein FliN [Escherichia coli E22]
gi|192955542|gb|EDV86021.1| flagellar motor switch protein FliN [Escherichia coli E110019]
gi|194412022|gb|EDX28334.1| flagellar motor switch protein FliN [Escherichia coli B171]
gi|194421509|gb|EDX37523.1| flagellar motor switch protein FliN [Escherichia coli 101-1]
gi|208725150|gb|EDZ74857.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4206]
gi|208731096|gb|EDZ79785.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4045]
gi|208740533|gb|EDZ88215.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4042]
gi|209158364|gb|ACI35797.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC4115]
gi|209766810|gb|ACI81717.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766812|gb|ACI81718.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766814|gb|ACI81719.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209766816|gb|ACI81720.1| flagellar motor switch protein FliN [Escherichia coli]
gi|209912627|dbj|BAG77701.1| flagellar motor switch protein FliN [Escherichia coli SE11]
gi|217317973|gb|EEC26400.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
TW14588]
gi|218352283|emb|CAU98040.1| flagellar motor switching and energizing component [Escherichia
coli 55989]
gi|218361294|emb|CAQ98878.1| flagellar motor switching and energizing component [Escherichia
coli IAI1]
gi|218427505|emb|CAR08400.2| flagellar motor switching and energizing component [Escherichia
coli ED1a]
gi|254592996|gb|ACT72357.1| flagellar motor switching and energizing component [Escherichia
coli O157:H7 str. TW14359]
gi|257754570|dbj|BAI26072.1| flagellar motor switching and energizing component FliN
[Escherichia coli O26:H11 str. 11368]
gi|257759492|dbj|BAI30989.1| flagellar motor switching and energizing component FliN
[Escherichia coli O103:H2 str. 12009]
gi|257764895|dbj|BAI36390.1| flagellar motor switching and energizing component FliN
[Escherichia coli O111:H- str. 11128]
gi|284921854|emb|CBG34929.1| flagellar motor switch protein FliN [Escherichia coli 042]
gi|290762996|gb|ADD56957.1| Flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
CB9615]
gi|291323156|gb|EFE62584.1| fliN [Escherichia coli B088]
gi|299877707|gb|EFI85918.1| flagellar motor switch protein FliN [Escherichia coli MS 196-1]
gi|300316638|gb|EFJ66422.1| flagellar motor switch protein FliN [Escherichia coli MS 175-1]
gi|300399791|gb|EFJ83329.1| flagellar motor switch protein FliN [Escherichia coli MS 69-1]
gi|300403263|gb|EFJ86801.1| flagellar motor switch protein FliN [Escherichia coli MS 84-1]
gi|300412822|gb|EFJ96132.1| flagellar motor switch protein FliN [Escherichia coli MS 115-1]
gi|300449198|gb|EFK12818.1| flagellar motor switch protein FliN [Escherichia coli MS 116-1]
gi|300461016|gb|EFK24509.1| flagellar motor switch protein FliN [Escherichia coli MS 187-1]
gi|300525167|gb|EFK46236.1| flagellar motor switch protein FliN [Escherichia coli MS 119-7]
gi|300528806|gb|EFK49868.1| flagellar motor switch protein FliN [Escherichia coli MS 107-1]
gi|300839495|gb|EFK67255.1| flagellar motor switch protein FliN [Escherichia coli MS 124-1]
gi|300845733|gb|EFK73493.1| flagellar motor switch protein FliN [Escherichia coli MS 78-1]
gi|301077070|gb|EFK91876.1| flagellar motor switch protein FliN [Escherichia coli MS 146-1]
gi|306907639|gb|EFN38142.1| flagellar motor switch protein FliN [Escherichia coli W]
gi|308120397|gb|EFO57659.1| flagellar motor switch protein FliN [Escherichia coli MS 145-7]
gi|309702235|emb|CBJ01552.1| flagellar motor switch protein FliN [Escherichia coli ETEC H10407]
gi|315061246|gb|ADT75573.1| flagellar motor switching and energizing component [Escherichia
coli W]
gi|315257222|gb|EFU37190.1| flagellar motor switch protein FliN [Escherichia coli MS 85-1]
gi|320175464|gb|EFW50563.1| Flagellar motor switch protein FliN [Shigella dysenteriae CDC
74-1112]
gi|320191920|gb|EFW66567.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
EC1212]
gi|320198636|gb|EFW73236.1| Flagellar motor switch protein FliN [Escherichia coli EC4100B]
gi|320641794|gb|EFX11182.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
G5101]
gi|320658039|gb|EFX25801.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320658611|gb|EFX26305.1| flagellar motor switch protein FliN [Escherichia coli O55:H7 str.
USDA 5905]
gi|320668509|gb|EFX35336.1| flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
LSU-61]
gi|323152723|gb|EFZ38995.1| flagellar motor switch protein fliN [Escherichia coli EPECa14]
gi|323158575|gb|EFZ44589.1| flagellar motor switch protein fliN [Escherichia coli E128010]
gi|323174675|gb|EFZ60295.1| flagellar motor switch protein fliN [Escherichia coli LT-68]
gi|323378177|gb|ADX50445.1| flagellar motor switch protein FliN [Escherichia coli KO11]
gi|323937216|gb|EGB33496.1| flagellar motor switch protein FliN [Escherichia coli E1520]
gi|323940395|gb|EGB36586.1| flagellar motor switch protein FliN [Escherichia coli E482]
gi|323948350|gb|EGB44337.1| flagellar motor switch protein FliN [Escherichia coli H120]
gi|323961990|gb|EGB57589.1| flagellar motor switch protein FliN [Escherichia coli H489]
gi|323972754|gb|EGB67954.1| flagellar motor switch protein FliN [Escherichia coli TA007]
gi|324018855|gb|EGB88074.1| flagellar motor switch protein FliN [Escherichia coli MS 117-3]
gi|324118995|gb|EGC12884.1| flagellar motor switch protein FliN [Escherichia coli E1167]
gi|326342356|gb|EGD66137.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
1044]
gi|326344861|gb|EGD68608.1| Flagellar motor switch protein FliN [Escherichia coli O157:H7 str.
1125]
gi|331039365|gb|EGI11585.1| flagellar motor switch protein FliN [Escherichia coli H736]
gi|331059241|gb|EGI31218.1| flagellar motor switch protein FliN [Escherichia coli TA143]
gi|331063831|gb|EGI35742.1| flagellar motor switch protein FliN [Escherichia coli TA271]
gi|331069657|gb|EGI41044.1| flagellar motor switch protein FliN [Escherichia coli TA280]
gi|331074288|gb|EGI45608.1| flagellar motor switch protein FliN [Escherichia coli H591]
gi|331079713|gb|EGI50910.1| flagellar motor switch protein FliN [Escherichia coli H299]
gi|332093097|gb|EGI98161.1| flagellar motor switch protein fliN [Shigella boydii 5216-82]
gi|332101239|gb|EGJ04585.1| flagellar motor switch protein FliN [Shigella sp. D9]
gi|332343672|gb|AEE57006.1| flagellar motor switch protein FliN [Escherichia coli UMNK88]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|16760921|ref|NP_456538.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141387|ref|NP_804729.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213023114|ref|ZP_03337561.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213163378|ref|ZP_03349088.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213418730|ref|ZP_03351796.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424997|ref|ZP_03357747.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213584777|ref|ZP_03366603.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213650745|ref|ZP_03380798.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855270|ref|ZP_03383510.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289829469|ref|ZP_06547081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25300772|pir||AB0753 flagellar motor switch protein FliN [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503218|emb|CAD05725.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137014|gb|AAO68578.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|268316334|ref|YP_003290053.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
gi|262333868|gb|ACY47665.1| flagellar motor switch protein FliN [Rhodothermus marinus DSM 4252]
Length = 293
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/296 (11%), Positives = 89/296 (30%), Gaps = 33/296 (11%)
Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
++ L + + ++ ++ + + + ++ + V AS ++ IG
Sbjct: 10 LEATREALQQFLQTLLNQELTLELGTPATITTDQ-LNELAGDRVLIWASSEPFA----IG 64
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
+ + + L + +LG + + + L +A + + L E S
Sbjct: 65 LTPDWIPLLSQAMLGEALNPGDEGTDDLLGE----VAAQGYGTLRNALAAEGVRLPEVSF 120
Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET------------- 205
++ + + + + I + +++P
Sbjct: 121 VVQQPGSGAAQPPVEL---PDSLLQLPFTLQIGDTRHEGFILLPPSVTQQPTSRAPKATA 177
Query: 206 -------LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
++ S + + + I + ++ L DV+
Sbjct: 178 AGAAEQAAVEVRPASFGELGPERIGDGGVKGNL-ELLADVELEIVVELGRRRLPLADVLR 236
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
L G +I + ANG+ I E + + + +RIT + ++ K
Sbjct: 237 LTTGSIIELEKLVGEPLEIYANGRLIAEGEAVVIDEQFGVRITSLVTGSRQREKAL 292
>gi|268589968|ref|ZP_06124189.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
gi|291314685|gb|EFE55138.1| flagellar motor switch protein FliN [Providencia rettgeri DSM 1131]
Length = 138
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K +++L G V+ + NG I E+ V
Sbjct: 56 DMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
NY IRITD I ++
Sbjct: 116 SDNYGIRITDIITPSERM 133
>gi|295098286|emb|CBK87376.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|290475712|ref|YP_003468601.1| flagellar motor switch protein [Xenorhabdus bovienii SS-2004]
gi|289175034|emb|CBJ81837.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus bovienii SS-2004]
Length = 135
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K ++ L G V+P + NG I E+ V
Sbjct: 53 DLIMDIPVKLSVELGRTKMTIKQLLRLSQGSVVPLDGLAGEPLDILINGYLIAQGEVVVV 112
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 113 SDKYGIRITDIITPSERM 130
>gi|312973837|ref|ZP_07788009.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
gi|310332432|gb|EFP99667.1| flagellar motor switch protein fliN [Escherichia coli 1827-70]
Length = 134
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 112 ADKYGVRITDIITPSERM 129
>gi|283832659|ref|ZP_06352400.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
gi|291072333|gb|EFE10442.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|283785716|ref|YP_003365581.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
gi|282949170|emb|CBG88778.1| flagellar motor switch protein FliN [Citrobacter rodentium ICC168]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|237731994|ref|ZP_04562475.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
gi|226907533|gb|EEH93451.1| fliN flagellar switch protein [Citrobacter sp. 30_2]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|161502901|ref|YP_001570013.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864248|gb|ABX20871.1| hypothetical protein SARI_00960 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|222530126|ref|YP_002574008.1| flagellar motor switch protein [Caldicellulosiruptor bescii DSM
6725]
gi|222456973|gb|ACM61235.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor bescii DSM 6725]
Length = 378
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 82/293 (27%), Gaps = 55/293 (18%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF----SHIIHSFKENFVFSQ 85
+ I ++ ++L +DI+ F +I K +
Sbjct: 129 QLSAIQEAMNQ-MVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187
Query: 86 ASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE---KKLAKR 137
+ + L++ +L + T Q + + E +++ ++
Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKEEVLRQ 247
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
T +Q + + P + ++ N
Sbjct: 248 TSSQTTKSQKKASQP-----PYTPPPQRKEQPQQVYNVSP-------------------- 282
Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
+ ++ E + + + + I + + +++++
Sbjct: 283 ----------------VQFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREIL 325
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G +I + NGK I E+ + +N+ +RITD +N +
Sbjct: 326 EFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 378
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
TSP P + + + +G + ++ V+I+
Sbjct: 18 SETSPSSPTI----------SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSI 67
Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYN 124
K+ + F + V + + ++G + E +L
Sbjct: 68 LKWDELPKEFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTE 127
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVT 182
LS +++ + + S L+ ++ + +P + + + + +
Sbjct: 128 LQLSAIQEA-MNQMVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIV 186
Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
+ MTI + + S + +IP + + L + + QSE +
Sbjct: 187 KVAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETVKE 242
>gi|145297435|ref|YP_001140276.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850207|gb|ABO88528.1| lateral flagellar motor switch protein, LfiM [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 236
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/247 (11%), Positives = 68/247 (27%), Gaps = 30/247 (12%)
Query: 68 GKFSHIIH--SFKENFVFSQASLSSW---SSNFFIGCSNNLVITLLENLLGASHETIPQL 122
+ I S + + S + S +++ L G S +
Sbjct: 12 LTYQEFIAVSSPEHDDGLIWVEARSLLDTQRVAYFSISPSVIYRLAVLFFGGSLRNQGET 71
Query: 123 YN--RSLSTVEKKLAKRTIAQISAVLNQCIS-TTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + L+ E++L R + + C+ E L + +
Sbjct: 72 ASHSKGLTDTEQRLVLRLCQYQVDIWSSCLGLGDLEWQLTLITRDVLPVSRL-------- 123
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
++ + + + L+ P E+ +L + +
Sbjct: 124 WMAAATLTVGSFSHGWQLWLVPPAESTGPAAGHALQ------------DGTLEQALTHIP 171
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + TL D+ LK+G V+ E A + +S + + +
Sbjct: 172 TRLRVVMGQLSMTLADLECLKVGDVLSLDLPELVPA--LIGNRPCFSGRIAEHKGSLVYQ 229
Query: 300 ITDRINF 306
+ +
Sbjct: 230 VATVVEE 236
>gi|152965630|ref|YP_001361414.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
SRS30216]
gi|151360147|gb|ABS03150.1| flagellar motor switch protein FliN [Kineococcus radiotolerans
SRS30216]
Length = 249
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 16/185 (8%)
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFY-----------DIDYLKKNTNRLSNEFVT 182
+ + T+ + + P LE + +++++ V
Sbjct: 67 VGEETLNTLLMSPEGALDPVDALRPALETVVHALGQCTLEAGVEGDPAQALSQIADGAVA 126
Query: 183 TINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNI 242
I+ + + P T + + + +++
Sbjct: 127 VIDAGGETLALIGLTLTAQPDTTPAPMPSFAPAGTPAPAGP-----RRTMDLLRDVQMDV 181
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ T++D++ L G V+ + A + NG+ I E+ V ++Y IRIT+
Sbjct: 182 TVELGRTSMTVQDLLALTPGSVVELDRAAGSPADVLVNGQLIARGEVVVVDEDYAIRITE 241
Query: 303 RINFD 307
+ +
Sbjct: 242 IVTPE 246
>gi|332756102|gb|EGJ86455.1| flagellar motor switch protein fliN [Shigella flexneri 4343-70]
gi|332766684|gb|EGJ96888.1| flagellar motor switch protein FliN [Shigella flexneri 2930-71]
Length = 134
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 112 ADKYGVRITDIITPSERM 129
>gi|328948402|ref|YP_004365739.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
2489]
gi|328448726|gb|AEB14442.1| flagellar motor switch protein FliN [Treponema succinifaciens DSM
2489]
Length = 408
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 31/73 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + K T+KD++ L G +I + N K I E+ +
Sbjct: 327 NLIMDVFMEMTVELGRTKKTIKDILGLGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVI 386
Query: 293 GKNYTIRITDRIN 305
+N+ +R+T+ +
Sbjct: 387 DENFGVRVTEILP 399
>gi|183598646|ref|ZP_02960139.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
gi|188020830|gb|EDU58870.1| hypothetical protein PROSTU_02051 [Providencia stuartii ATCC 25827]
Length = 138
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K +++L G V+ + NG I E+ V
Sbjct: 56 NLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
NY IRITD I ++
Sbjct: 116 SDNYGIRITDIITPSERM 133
>gi|146312183|ref|YP_001177257.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
gi|145319059|gb|ABP61206.1| flagellar motor switch protein FliN [Enterobacter sp. 638]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|239909253|ref|YP_002955995.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
gi|239799120|dbj|BAH78109.1| flagellar motor switch protein FliN [Desulfovibrio magneticus RS-1]
Length = 186
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 38/101 (37%)
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+++ Q D I + +++ + K + +++ L G VI
Sbjct: 82 KAKFKDMTPEAKAQRPDNIRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNK 141
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK + E + + + +R+TD I+ ++
Sbjct: 142 LAGEPLEIYVNGKLVARGEAVVINEKFGVRLTDIISPIERV 182
>gi|209766808|gb|ACI81716.1| flagellar motor switch protein FliN [Escherichia coli]
gi|320647153|gb|EFX15986.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
493-89]
gi|320652437|gb|EFX20735.1| flagellar motor switch protein FliN [Escherichia coli O157:H- str.
H 2687]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLSVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|256833227|ref|YP_003161954.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
20603]
gi|256686758|gb|ACV09651.1| flagellar motor switch protein FliN [Jonesia denitrificans DSM
20603]
Length = 259
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T + + + R Y + + + I K ++ V+ L
Sbjct: 156 PSPTEPEIRPFTPPMMGSGTGDDKL------RLLYDVEMTLTVEIGRAKLPVRQVLDLTP 209
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G ++ A L NG + E+ V ++Y +R+T+ I+ +
Sbjct: 210 GSIVELDRVAGAPADLLVNGHLVARGEVVVVDEDYGLRVTEIIDTTE 256
>gi|56413110|ref|YP_150185.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62180552|ref|YP_216969.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161613454|ref|YP_001587419.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|168239217|ref|ZP_02664275.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244828|ref|ZP_02669760.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168259736|ref|ZP_02681709.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194443428|ref|YP_002041242.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449656|ref|YP_002046028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194734159|ref|YP_002115011.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248203|ref|YP_002146046.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262868|ref|ZP_03162942.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362036|ref|YP_002141673.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198242746|ref|YP_002215109.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390489|ref|ZP_03217100.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931014|ref|ZP_03221840.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238912450|ref|ZP_04656287.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|56127367|gb|AAV76873.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62128185|gb|AAX65888.1| flagellar biosynthesis, component of motor switch and energizing
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161362818|gb|ABX66586.1| hypothetical protein SPAB_01171 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402091|gb|ACF62313.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407960|gb|ACF68179.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194709661|gb|ACF88882.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197093513|emb|CAR58974.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197211906|gb|ACH49303.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241123|gb|EDY23743.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288082|gb|EDY27469.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197937262|gb|ACH74595.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602934|gb|EDZ01480.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320058|gb|EDZ05263.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205336349|gb|EDZ23113.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205350647|gb|EDZ37278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|322616970|gb|EFY13878.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618209|gb|EFY15101.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625880|gb|EFY22699.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626332|gb|EFY23142.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632747|gb|EFY29492.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322639089|gb|EFY35782.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640405|gb|EFY37061.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647234|gb|EFY43733.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649918|gb|EFY46339.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655526|gb|EFY51834.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660304|gb|EFY56542.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662985|gb|EFY59192.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668170|gb|EFY64329.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674071|gb|EFY70165.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675577|gb|EFY71651.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683012|gb|EFY79028.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686706|gb|EFY82684.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715028|gb|EFZ06599.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323195406|gb|EFZ80586.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198066|gb|EFZ83183.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204462|gb|EFZ89468.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207552|gb|EFZ92500.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211009|gb|EFZ95869.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217537|gb|EGA02256.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220730|gb|EGA05174.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226683|gb|EGA10880.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231559|gb|EGA15672.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236002|gb|EGA20081.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240572|gb|EGA24615.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245464|gb|EGA29464.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247582|gb|EGA31533.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253955|gb|EGA37779.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255517|gb|EGA39278.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262115|gb|EGA45678.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266238|gb|EGA49728.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270653|gb|EGA54094.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|16129893|ref|NP_416456.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|89108778|ref|AP_002558.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. W3110]
gi|170081590|ref|YP_001730910.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238901151|ref|YP_002926947.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253773105|ref|YP_003035936.1| flagellar motor switch protein FliN [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|120347|sp|P15070|FLIN_ECOLI RecName: Full=Flagellar motor switch protein FliN
gi|414721|gb|AAA03207.1| flagellar motor switch complex component [Escherichia coli]
gi|1736612|dbj|BAA15771.1| flagellar motor switching and energizing component [Escherichia
coli str. K12 substr. W3110]
gi|1788256|gb|AAC75013.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. MG1655]
gi|169889425|gb|ACB03132.1| flagellar motor switching and energizing component [Escherichia
coli str. K-12 substr. DH10B]
gi|238861114|gb|ACR63112.1| flagellar motor switching and energizing component [Escherichia
coli BW2952]
gi|253324149|gb|ACT28751.1| flagellar motor switch protein FliN [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448941|gb|ACX39363.1| flagellar motor switch protein FliN [Escherichia coli DH1]
gi|315136583|dbj|BAJ43742.1| flagellar motor switch protein FliN [Escherichia coli DH1]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|296103566|ref|YP_003613712.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058025|gb|ADF62763.1| flagellar switch protein fliN [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 137
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|325981183|ref|YP_004293585.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
gi|325530702|gb|ADZ25423.1| flagellar motor switch protein FliN [Nitrosomonas sp. AL212]
Length = 180
Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 98 DLILDIPVQMTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 157
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 158 NDKFGIRLTDIITPSERIRK 177
>gi|300923891|ref|ZP_07139906.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
gi|300419854|gb|EFK03165.1| flagellar motor switch protein FliN [Escherichia coli MS 182-1]
Length = 137
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|292487984|ref|YP_003530861.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|292899204|ref|YP_003538573.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291199052|emb|CBJ46163.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291553408|emb|CBA20453.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|312172109|emb|CBX80366.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
BAA-2158]
Length = 133
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 51 DMIMDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 110
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 111 ADKYGVRITDIITPTERM 128
>gi|16765315|ref|NP_460930.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167552790|ref|ZP_02346541.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167993552|ref|ZP_02574646.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168234150|ref|ZP_02659208.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168462481|ref|ZP_02696412.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168823020|ref|ZP_02835020.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194470887|ref|ZP_03076871.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205352329|ref|YP_002226130.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856510|ref|YP_002243161.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|120348|sp|P26419|FLIN_SALTY RecName: Full=Flagellar motor switch protein FliN
gi|154036|gb|AAA27105.1| fliN flagellar switch protein [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16420512|gb|AAL20889.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194457251|gb|EDX46090.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195634210|gb|EDX52562.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|205272110|emb|CAR36963.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205322614|gb|EDZ10453.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205328440|gb|EDZ15204.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205331893|gb|EDZ18657.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205340673|gb|EDZ27437.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206708313|emb|CAR32616.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261247143|emb|CBG24966.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993966|gb|ACY88851.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158491|emb|CBW18001.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912967|dbj|BAJ36941.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085404|emb|CBY95185.1| Flagellar motor switch protein fliN [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224622|gb|EFX49685.1| Flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323130256|gb|ADX17686.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326627379|gb|EGE33722.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332988866|gb|AEF07849.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 137
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|331653358|ref|ZP_08354363.1| flagellar motor switch protein FliN [Escherichia coli M718]
gi|331049456|gb|EGI21528.1| flagellar motor switch protein FliN [Escherichia coli M718]
Length = 137
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|301165894|emb|CBW25467.1| flagellar motor switch protein FliN [Bacteriovorax marinus SJ]
Length = 131
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVV 257
P + +S + +D ++ + + + + + + +KD++
Sbjct: 15 PMANVEDINTARVSQLSDEIKAGDDALNKLKVQNLDFILDIPLKVTVELGRTEVMIKDLL 74
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L G V+ + NGK + E+ V + + IR+TD I+ ++
Sbjct: 75 QLGQGSVLELDKLAGEPLEILVNGKLVAKGEVVVVNEKFGIRLTDIISPIERI 127
>gi|332095499|gb|EGJ00515.1| flagellar motor switch protein fliN [Shigella dysenteriae 155-74]
Length = 134
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 52 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 112 ADKYGVRITDIITPSERM 129
>gi|146282918|ref|YP_001173071.1| flagellar motor switch protein [Pseudomonas stutzeri A1501]
gi|145571123|gb|ABP80229.1| flagellar motor switch protein FliN [Pseudomonas stutzeri A1501]
Length = 193
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 35/78 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + + ++++++ L G V+ + NG I E+ V +
Sbjct: 114 ILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 173
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 174 KFGIRLTDVISPTERIKK 191
>gi|258511385|ref|YP_003184819.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478111|gb|ACV58430.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 381
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/346 (10%), Positives = 91/346 (26%), Gaps = 68/346 (19%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ +G + + VDI+ S + F +V Q
Sbjct: 36 ADEIDVLGEIGNICFGSAATSLSSLLGRRVDITTPVVSILPRSEVESRFPTPYVLVQVDF 95
Query: 89 -SSWSSNFFIGC---SNNLVITLL-------------ENLLGASHETIPQLYNRSLSTVE 131
+ + L+ E L A E + Q+ + + +
Sbjct: 96 TEGLQGTNALAIEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMS 155
Query: 132 KKLAK---------RTIAQISAVLNQCISTTQESSPNLEDFYDID-----YLKKNTNRLS 177
+ + R + +E + + ++ +
Sbjct: 156 QLFGRYINISPPSVRVVTFTPDEAQAAFGPAEELVNVEFRLHVHELIDSHIMQLMPIPFA 215
Query: 178 NEFVTTINMNMT---------IENVASSFVLIIPQETLLKTTLI---------------- 212
E V ++ ++ E P +
Sbjct: 216 RELVRSMQVHTDAIVPEPREGDERRDGDA----PVSAGAEARGKNRDDAQAANRGREDEG 271
Query: 213 ------SLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + E + P A Y + +N+ + K +++++ L G +
Sbjct: 272 PSVAVRRPAFPDFDEGVTPRDARPVANLSLLYDVPLNVTVELGRAKKLIREILELAPGSI 331
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + N K+I E+ + +N+ +R+TD + D++
Sbjct: 332 LELDKLAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377
>gi|24113321|ref|NP_707831.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
gi|30063385|ref|NP_837556.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
2457T]
gi|110805915|ref|YP_689435.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
gi|24052332|gb|AAN43538.1| flagellar motor switch protein FliN [Shigella flexneri 2a str. 301]
gi|30041637|gb|AAP17365.1| flagellar motor switch protein FliN [Shigella flexneri 2a str.
2457T]
gi|110615463|gb|ABF04130.1| flagellar motor switch protein FliN [Shigella flexneri 5 str. 8401]
gi|281601386|gb|ADA74370.1| Flagellar motor switch protein FliN [Shigella flexneri 2002017]
gi|313650168|gb|EFS14581.1| flagellar motor switch protein fliN [Shigella flexneri 2a str.
2457T]
gi|332757212|gb|EGJ87549.1| flagellar motor switch protein fliN [Shigella flexneri 2747-71]
gi|332757512|gb|EGJ87847.1| flagellar motor switch protein fliN [Shigella flexneri K-671]
gi|333003349|gb|EGK22895.1| flagellar motor switch protein fliN [Shigella flexneri K-218]
gi|333004051|gb|EGK23585.1| flagellar motor switch protein fliN [Shigella flexneri K-272]
gi|333017695|gb|EGK37007.1| flagellar motor switch protein fliN [Shigella flexneri K-304]
gi|333017824|gb|EGK37131.1| flagellar motor switch protein fliN [Shigella flexneri K-227]
Length = 137
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|260598455|ref|YP_003211026.1| flagellar motor switch protein FliN [Cronobacter turicensis z3032]
gi|260217632|emb|CBA31929.1| Flagellar motor switch protein fliN [Cronobacter turicensis z3032]
Length = 154
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 72 NLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 132 ADKYGVRITDIITPSERM 149
>gi|283853449|ref|ZP_06370693.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
gi|283571169|gb|EFC19185.1| flagellar motor switch protein FliN [Desulfovibrio sp. FW1012B]
Length = 190
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 37/93 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+++ + + + +++ + K + +++ L G VI +
Sbjct: 94 QEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEI 153
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + +R+TD I+ ++
Sbjct: 154 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 186
>gi|125972999|ref|YP_001036909.1| flagellar motor switch protein [Clostridium thermocellum ATCC
27405]
gi|125713224|gb|ABN51716.1| CheC, inhibitor of MCP methylation [Clostridium thermocellum ATCC
27405]
Length = 406
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 82/303 (27%), Gaps = 25/303 (8%)
Query: 21 LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74
+ G G K E S++ + + + +DIS +
Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAV 175
Query: 75 HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ F S + ++ N++ + E + +
Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S V++ +A + Q Q + Y Y + + +
Sbjct: 236 SAVQEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPP 295
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + + + + + + + + +
Sbjct: 296 RQNDGYRNPINV------------QPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 343
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+KD++ G +I + NGK I E+ + +++ +RITD ++
Sbjct: 344 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 403
Query: 308 QKS 310
++
Sbjct: 404 KRL 406
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G S N + +G + + V I
Sbjct: 14 LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + ++V + + + + + ++G
Sbjct: 65 TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + + I + ++ + + SP +D +
Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPRGD 184
Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
+ + M I + S + ++P + K ++S+ + E+
Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232
>gi|261344128|ref|ZP_05971772.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
4541]
gi|282567720|gb|EFB73255.1| flagellar motor switch protein FliN [Providencia rustigianii DSM
4541]
Length = 138
Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K +++L G V+ + NG I E+ V
Sbjct: 56 DLIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
NY IRITD I ++
Sbjct: 116 SDNYGIRITDIITPSERM 133
>gi|51596031|ref|YP_070222.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
32953]
gi|153948620|ref|YP_001401269.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|170024625|ref|YP_001721130.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186895136|ref|YP_001872248.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|51589313|emb|CAH20934.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
32953]
gi|152960115|gb|ABS47576.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|169751159|gb|ACA68677.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186698162|gb|ACC88791.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
Length = 138
Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 ADKYGVRITDIITPSERM 133
>gi|317406786|gb|EFV86913.1| flagellar motor switch protein FliN [Achromobacter xylosoxidans
C54]
Length = 100
Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 16 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 75
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
Y IR+TD I ++ + ++R
Sbjct: 76 EDKYGIRLTDIITPSER-INRLNNRR 100
>gi|224498782|ref|ZP_03667131.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
Length = 515
Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|218549271|ref|YP_002383062.1| flagellar motor switch protein FliN [Escherichia fergusonii ATCC
35469]
gi|218356812|emb|CAQ89440.1| flagellar motor switching and energizing component [Escherichia
fergusonii ATCC 35469]
gi|324114211|gb|EGC08184.1| flagellar motor switch protein FliN [Escherichia fergusonii B253]
gi|325497688|gb|EGC95547.1| flagellar motor switch protein FliN [Escherichia fergusonii ECD227]
Length = 137
Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|156933434|ref|YP_001437350.1| flagellar motor switch protein FliN [Cronobacter sakazakii ATCC
BAA-894]
gi|156531688|gb|ABU76514.1| hypothetical protein ESA_01252 [Cronobacter sakazakii ATCC BAA-894]
Length = 154
Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 72 NLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 132 ADKYGVRITDIITPSERM 149
>gi|312621581|ref|YP_004023194.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202048|gb|ADQ45375.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kronotskyensis 2002]
Length = 378
Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/293 (10%), Positives = 82/293 (27%), Gaps = 55/293 (18%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF----SHIIHSFKENFVFSQ 85
+ I ++ ++L +DI+ F +I K +
Sbjct: 129 QLSAIQEAMNQ-MVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVK 187
Query: 86 ASLSSWSS-----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE---KKLAKR 137
+ + L++ +L + T Q + + E +++ ++
Sbjct: 188 VAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKEEVLRQ 247
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
T +Q + + + + ++ N
Sbjct: 248 TFSQTTKSQKKASQPSY-----TPPPQRTEQPQQVYNVSP-------------------- 282
Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
+ ++ E + + + + I + + +++++
Sbjct: 283 ----------------VQFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREIL 325
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
G +I + NGK I E+ + +N+ +RITD +N +
Sbjct: 326 EFSTGSIIELEKLAGEPVDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 378
Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 17/236 (7%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQS 67
TSP P + + + +G + ++ V+I+
Sbjct: 18 SETSPSSPTI----------SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSI 67
Query: 68 GKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYN 124
K+ + F + V + + ++G + E +L
Sbjct: 68 LKWDELPREFPVPYVAIKVVYKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTDELTE 127
Query: 125 RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVT 182
LS +++ + + S L+ ++ + +P + + + + +
Sbjct: 128 LQLSAIQEA-MNQMVGSASTSLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIV 186
Query: 183 TINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
+ MTI + + S + +IP + + L + + QSE +
Sbjct: 187 KVAFRMTIGDLIDSQIMQLIPVDFAKQLVDAMLKNTLGTPAQSETSTQTQQETLKE 242
>gi|194434958|ref|ZP_03067201.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
gi|194416793|gb|EDX32919.1| flagellar motor switch protein FliN [Shigella dysenteriae 1012]
Length = 137
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|303246796|ref|ZP_07333073.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
JJ]
gi|302491813|gb|EFL51693.1| flagellar motor switch protein FliN [Desulfovibrio fructosovorans
JJ]
Length = 202
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 37/93 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+++ + + + +++ + K + +++ L G VI +
Sbjct: 106 QEAKAPRPENVRRDLDFILDIPLDVSAELGRTKLLINELLQLGQGSVIELNKLAGEPLEI 165
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + +R+TD I+ ++
Sbjct: 166 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 198
>gi|123442772|ref|YP_001006749.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089733|emb|CAL12586.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|330861092|emb|CBX71359.1| flagellar motor switch protein fliN [Yersinia enterocolitica
W22703]
Length = 138
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 ADKYGVRITDIITPSERM 133
>gi|145598590|ref|YP_001162666.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
gi|145210286|gb|ABP39693.1| flagellar motor switch protein FliN [Yersinia pestis Pestoides F]
Length = 138
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 ADKYGVRITDIITSSERM 133
>gi|50120651|ref|YP_049818.1| flagellar motor switch protein FliN [Pectobacterium atrosepticum
SCRI1043]
gi|227112533|ref|ZP_03826189.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328350|ref|ZP_03832374.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|49611177|emb|CAG74623.1| flagellar motor switch protein flin [Pectobacterium atrosepticum
SCRI1043]
Length = 137
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 SDKYGVRITDIITPSERM 132
>gi|255523751|ref|ZP_05390717.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium carboxidivorans P7]
gi|296186754|ref|ZP_06855156.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
P7]
gi|255512620|gb|EET88894.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium carboxidivorans P7]
gi|296048791|gb|EFG88223.1| flagellar motor switch protein FliN [Clostridium carboxidivorans
P7]
Length = 406
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + K +KD++ L G +I + + NGK + E+ V
Sbjct: 325 DLILDVPLDISVVLGRTKKNIKDILNLGTGSLIELDKLAEEPVEILVNGKRVAYGEVVVV 384
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT I+ +++
Sbjct: 385 DENFGVRITSIISSEERI 402
Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/225 (11%), Positives = 62/225 (27%), Gaps = 9/225 (4%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
S TS P + + +G + ++ V+I+
Sbjct: 27 SEETKTSEETPETSNE-SELPALTDIERDLLGEIGNISMGSASTALSTIINQQVNITTPI 85
Query: 65 CQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLY 123
+ + F+ +S + + ++G
Sbjct: 86 VTITRLKDLKDQFEVPNVALEVKYVSGIVGENLLVMKITDAAVIANLMMGGDGNVEG--D 143
Query: 124 NRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ LS +E + I + + SP + ++ +E
Sbjct: 144 PKELSEIELSAVSEAMNQMIGSAATSMATMFMREVNISPPVSTIWNDLKSPVAKGISEDE 203
Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
+ ++ ++ I + V S+ + I+P T K I + ++
Sbjct: 204 PIIKVSFSLAIGDLVDSTIMQILPIATAKKIVSIMMGQESPEGEA 248
>gi|320182737|gb|EFW57621.1| Flagellar motor switch protein FliN [Shigella boydii ATCC 9905]
Length = 137
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVMALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|206896276|ref|YP_002246697.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Coprothermobacter
proteolyticus DSM 5265]
gi|206738893|gb|ACI17971.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Coprothermobacter
proteolyticus DSM 5265]
Length = 287
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 35/82 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VN+ + + ++KD+++L G +I + NGK I E+ +
Sbjct: 206 ELLLDVKVNVSVELGRSRVSIKDLLSLGSGSIITLDKLAGEPVDILVNGKPIAKGEVVVI 265
Query: 293 GKNYTIRITDRINFDQKSLKNF 314
+++ +RI D I ++
Sbjct: 266 DESFGVRILDIIAPKERLKAEL 287
>gi|289548279|ref|YP_003473267.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
gi|289181896|gb|ADC89140.1| flagellar motor switch protein FliN [Thermocrinis albus DSM 14484]
Length = 125
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 40/95 (42%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
++ + R+ ++ + ++ I L +++ L G V+ + ++
Sbjct: 27 GRHGEGQGDSQDLSEKVRRFLEIPLELEVVIGRTTLKLGELLHLGPGSVVELDNHVESPV 86
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK + E+ V + +RITD I +++
Sbjct: 87 DILVNGKLVAKGEIVVVEDKFGVRITDIIAREERI 121
>gi|239817145|ref|YP_002946055.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
gi|239803722|gb|ACS20789.1| flagellar motor switch protein FliN [Variovorax paradoxus S110]
Length = 155
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + + T+K ++ L G V+ + NG I E+ V
Sbjct: 72 ERILDVPVQLTAELGRTRITIKSLLQLSQGSVVELDGLAGQPLDVLINGYLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ Y IR+TD + ++ K
Sbjct: 132 NEKYGIRLTDIVTPSERMQK 151
>gi|170769346|ref|ZP_02903799.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
gi|170121670|gb|EDS90601.1| flagellar motor switch protein FliN [Escherichia albertii TW07627]
Length = 137
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALEGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|260222422|emb|CBA31970.1| Flagellar motor switch protein fliN [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 162
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 81 VLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 140
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 141 KFGIRLTDVVTPSERL 156
>gi|331269276|ref|YP_004395768.1| flagellar motor switch protein FliN [Clostridium botulinum
BKT015925]
gi|329125826|gb|AEB75771.1| flagellar motor switch protein FliN [Clostridium botulinum
BKT015925]
Length = 417
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + K ++KDV+ L G +I + + NGK+I E+ V
Sbjct: 335 DLILDVPLEISVVLGKTKKSIKDVLALGTGSLIELDKLAEEPVEIYVNGKKIAYGEVVVV 394
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RI + ++ +++
Sbjct: 395 DENFGVRIVNIVSGEERV 412
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 12/232 (5%)
Query: 4 QSIHKNTSPLHPILLARLTGKLGDKKTIE---KISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+SI +NT L + + K + + +G + + V+I
Sbjct: 35 ESIEENTQVLENTENVENIEESSEDKITDIEMDLLGEIGNISMGSASTALSTIIGSAVNI 94
Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + +F+ S + + ++G
Sbjct: 95 TTPQVRVTTLKELRDTFEVPNIALEVKYTSGIIGGNLLVMKIPDAAVIANLMMGGDGRIE 154
Query: 120 PQLYNRSLSTVEKKL----AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
+ L+ +E+ + I + + S SP + + + +
Sbjct: 155 EKS---ELTEIEESAVSEAMNQMIGSAATSMATMFSREVNISPPVSKIWKDNSMPLCETI 211
Query: 176 LSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
+E + ++ +TI + V S+ + I+P +T K I + + K E +
Sbjct: 212 KEDEDIIEVSFKLTIGDLVDSNIMQILPIKTAKKIVSIMMGQEEKGEAVEQS 263
>gi|187478202|ref|YP_786226.1| flagellar motor switch protein [Bordetella avium 197N]
gi|115422788|emb|CAJ49316.1| flagellar motor switch protein [Bordetella avium 197N]
Length = 172
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 88 DLVMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 147
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
+ Y IR+TD I ++ + ++R
Sbjct: 148 EEKYGIRLTDIITPSER-INRLNNRR 172
>gi|307131597|ref|YP_003883613.1| flagellar motor switch protein fliN [Dickeya dadantii 3937]
gi|306529126|gb|ADM99056.1| Flagellar motor switch protein fliN [Dickeya dadantii 3937]
Length = 138
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 SDKYGVRITDIITPSERM 133
>gi|294504011|ref|YP_003568073.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
gi|294354470|gb|ADE64811.1| flagellar motor switch protein FliN [Yersinia pestis Z176003]
Length = 124
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 42 DLILDIPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 102 ADKYGVRITDIITSSERM 119
>gi|253688960|ref|YP_003018150.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251755538|gb|ACT13614.1| flagellar motor switch protein FliN [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 137
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 SDKYGVRITDIITPSERM 132
>gi|220934502|ref|YP_002513401.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
gi|219995812|gb|ACL72414.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. HL-EbGR7]
Length = 154
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I I + +++++ L G V+ + NG I E+ V +
Sbjct: 75 VLDIPVTISMEIGRTRMPIRNLLQLNQGSVVELDRLAGEPLDVYVNGTLIAHGEVVVVNE 134
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 135 KFGIRLTDVISPTERVKK 152
>gi|226327728|ref|ZP_03803246.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
gi|225203432|gb|EEG85786.1| hypothetical protein PROPEN_01601 [Proteus penneri ATCC 35198]
Length = 136
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K +++L G V+ + NG I E+ V
Sbjct: 54 NLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 114 SDKYGIRITDIITPSERM 131
>gi|46906951|ref|YP_013340.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091662|ref|ZP_00229458.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|258611825|ref|ZP_05711672.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|300764512|ref|ZP_07074505.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|46880217|gb|AAT03517.1| flagellar motor switch domain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019981|gb|EAL10718.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|258606445|gb|EEW19053.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|300514866|gb|EFK41920.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
Length = 504
Score = 80.5 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT------------- 210
D + + + + + + P
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398
Query: 211 -----------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+++ + ++ + + + V ++ K L+ ++
Sbjct: 399 EATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504
>gi|271500078|ref|YP_003333103.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
gi|270343633|gb|ACZ76398.1| flagellar motor switch protein FliN [Dickeya dadantii Ech586]
Length = 138
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 SDKYGVRITDIITPSERM 133
>gi|290893997|ref|ZP_06556972.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|290556443|gb|EFD89982.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
Length = 504
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 399 EATTPAEIIEPEKSAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504
>gi|293596185|ref|ZP_06684140.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|293596894|ref|ZP_06684374.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293583572|gb|EFF95604.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293593248|gb|EFG01009.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
Length = 504
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 279 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 399 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 504
>gi|300722648|ref|YP_003711938.1| flagellar motor switch and energizing protein [Xenorhabdus
nematophila ATCC 19061]
gi|297629155|emb|CBJ89751.1| flagellar biosynthesis; component of motor switch and energizing
[Xenorhabdus nematophila ATCC 19061]
Length = 135
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K ++ L G V+ + NG I E+ V
Sbjct: 53 DLIMDIPVKLSVELGRTKMTIKQLLKLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 112
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 113 SDKYGIRITDIITPSERM 130
>gi|15644624|ref|NP_228489.1| chemotaxis protein [Thermotoga maritima MSB8]
Length = 154
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + TLK V+ + G +I + NGK I E+ +
Sbjct: 72 ELLLDIPLKVTVELGRTRMTLKRVLEMIPGSIIELDKLTGEPVDILVNGKLIARGEVVVI 131
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT+ ++ ++
Sbjct: 132 DENFGVRITEIVSPKERL 149
>gi|47095266|ref|ZP_00232877.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|47016337|gb|EAL07259.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
Length = 504
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 220 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 278
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 279 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 338
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 339 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 398
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 399 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 458
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 459 CEKDVIILKESMNEPLVLALNGVMIGKGILVRVDDHFGIQMTELVR 504
>gi|293605020|ref|ZP_06687415.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
ATCC 43553]
gi|292816589|gb|EFF75675.1| flagellar motor switch phosphatase FliY [Achromobacter piechaudii
ATCC 43553]
Length = 101
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 17 DLIMDVPVQLTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVV 76
Query: 293 GKNYTIRITDRINFDQKSLKNFLHKR 318
Y IR+TD I ++ + ++R
Sbjct: 77 EDKYGIRLTDIITPSER-INRLNNRR 101
>gi|254830309|ref|ZP_05234964.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
Length = 515
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGMVQNDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|312111667|ref|YP_003989983.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y4.1MC1]
gi|311216768|gb|ADP75372.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Geobacillus sp. Y4.1MC1]
Length = 395
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K ++++++ L G +I + N K I E+ + +
Sbjct: 316 LLDVPLQVTVELGRTKRSVQEILQLSSGSIIELDKLAGEPVDILVNNKLIAKGEVVVIDE 375
Query: 295 NYTIRITDRINFDQKSLK 312
N+ +R+TD I+ + K
Sbjct: 376 NFGVRVTDIISQSDRLKK 393
Score = 62.3 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/194 (8%), Positives = 57/194 (29%), Gaps = 2/194 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V+I+ S + ++ F
Sbjct: 37 QDALGEIGNISFGSSATALSVLLNQKVEITTPSVSIIQRKNVDSEFPLPYVAIQVNYTDG 96
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + ++ + + + ++
Sbjct: 97 FLGTNLLVIKQEDAAIIADLMLGGDGTNTADELGEIQLSAVQEAMNQMMGSAATSMSTIF 156
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP ++ K + + ++ + I + + S+ + ++P + +
Sbjct: 157 GKRVDISPPTLHLLNVREEKGIEYLPNEDVFIKVSFRLKIGDLIDSNIMQLLPVDFAKEL 216
Query: 210 TLISLSSQNKSENQ 223
L S +S +
Sbjct: 217 VKQLLHSSGESSGE 230
>gi|242238989|ref|YP_002987170.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
gi|242131046|gb|ACS85348.1| flagellar motor switch protein FliN [Dickeya dadantii Ech703]
Length = 136
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 54 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 113
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 114 ADKYGVRITDIITPSERM 131
>gi|315281361|ref|ZP_07870001.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|313615000|gb|EFR88504.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
Length = 514
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/285 (9%), Positives = 83/285 (29%), Gaps = 27/285 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEK 409
Query: 223 ----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
+ ++ + + + V ++ K L+ ++
Sbjct: 410 ATPPAEIIEPEKPAEPVQPIVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWC 469
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 EKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 514
>gi|149928154|ref|ZP_01916400.1| Type III secretion system outer membrane O protein [Limnobacter sp.
MED105]
gi|149823139|gb|EDM82377.1| Type III secretion system outer membrane O protein [Limnobacter sp.
MED105]
Length = 149
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 30/80 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K ++ L G VI + NG I E+ V
Sbjct: 67 DMILDIPVQLTVELGRTKIPIKHILQLAQGSVIELDGLAGEPMDVLVNGYLIAQGEVVVV 126
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 127 NDKFGIRLTDIITPSERLRK 146
>gi|332161334|ref|YP_004297911.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318605255|emb|CBY26753.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665564|gb|ADZ42208.1| flagellar motor switch protein FliN [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 124
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 42 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 102 ADKYGVRITDIITPSERM 119
>gi|226223331|ref|YP_002757438.1| flagellar motor switch protein FliY [Listeria monocytogenes
Clip81459]
gi|255521670|ref|ZP_05388907.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
gi|225875793|emb|CAS04496.1| Putative flagellar motor switch protein FliY [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|328467266|gb|EGF38346.1| flagellar motor switch protein [Listeria monocytogenes 1816]
Length = 515
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT------------- 210
D + + + + + + P
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 211 -----------LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+++ + ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|254900064|ref|ZP_05259988.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911383|ref|ZP_05261395.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
gi|254935710|ref|ZP_05267407.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|258608293|gb|EEW20901.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|293589320|gb|EFF97654.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
Length = 515
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGMVQDDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVMIGKGILVRVDDHFGIQMTELVR 515
>gi|217965202|ref|YP_002350880.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|217334472|gb|ACK40266.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|307570239|emb|CAR83418.1| flagellar motor switch domain protein [Listeria monocytogenes L99]
gi|328475662|gb|EGF46411.1| flagellar motor switch protein [Listeria monocytogenes 220]
gi|332311125|gb|EGJ24220.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 515
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|171057711|ref|YP_001790060.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
gi|170775156|gb|ACB33295.1| flagellar motor switch protein FliN [Leptothrix cholodnii SP-6]
Length = 153
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + +K+++ L G V+ + NG I E+ V
Sbjct: 69 NLILDIPVQLTVELGRTRIPIKNILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 128
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 129 NDKFGIRLTDIVTPSERM 146
>gi|21242690|ref|NP_642272.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21108163|gb|AAM36808.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 156
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 35/91 (38%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
Q ++ D + V + + + +++++ L G V+ +
Sbjct: 62 QAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 121
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NG I E+ + + IR+TD ++ ++
Sbjct: 122 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 152
>gi|292493589|ref|YP_003529028.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
gi|291582184|gb|ADE16641.1| flagellar motor switch protein FliN [Nitrosococcus halophilus Nc4]
Length = 152
Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 34/80 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + I + +++D++ L G V+ + NG I E+ V
Sbjct: 71 DLILDIPVTMAMEIGRTRISIRDLLKLNRGSVVELERLAGEPLDVLVNGCLIAHGEVVVV 130
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I+ ++ K
Sbjct: 131 NEKFGIRLTDVISTTERVRK 150
>gi|332298231|ref|YP_004440153.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
12168]
gi|332181334|gb|AEE17022.1| flagellar motor switch protein FliN [Treponema brennaborense DSM
12168]
Length = 396
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 33/76 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K +K+++ + G +I + N K I E+ + +
Sbjct: 319 IMDVYMEMTVELGRTKKQIKEILGMGEGTIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 378
Query: 295 NYTIRITDRINFDQKS 310
N+ +R+T+ ++ ++
Sbjct: 379 NFGVRVTEILSPIERV 394
>gi|153840527|ref|ZP_01993194.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ3810]
gi|149745811|gb|EDM56941.1| flagellar motor switch protein FliM [Vibrio parahaemolyticus
AQ3810]
Length = 168
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 10/100 (10%), Positives = 23/100 (23%), Gaps = 6/100 (6%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
R+ + + + + + ++S Q KF
Sbjct: 37 FDFSSQDRIVRG------RMPTLELINERFARHMRISLFNMLRKTAEVSINGVQMMKFGE 90
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLL 112
++ + I LV L++ L
Sbjct: 91 YQNTLYVPTSLNMVRFRPLKGTALITMEARLVFILVDKFL 130
>gi|51894129|ref|YP_076820.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
gi|51857818|dbj|BAD41976.1| flagellar motor switch protein [Symbiobacterium thermophilum IAM
14863]
Length = 126
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 35/73 (47%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + +L++++ + G V+ L NG+ + E+ +G+
Sbjct: 49 LADVELELTVELGQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGE 108
Query: 295 NYTIRITDRINFD 307
NY IRIT+ IN +
Sbjct: 109 NYGIRITELINPE 121
>gi|251789180|ref|YP_003003901.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
gi|247537801|gb|ACT06422.1| flagellar motor switch protein FliN [Dickeya zeae Ech1591]
Length = 138
Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 116 SDKYGVRITDIITPSERM 133
>gi|254829357|ref|ZP_05234044.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258601770|gb|EEW15095.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
Length = 515
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|269836615|ref|YP_003318843.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
20745]
gi|269785878|gb|ACZ38021.1| flagellar motor switch protein FliN [Sphaerobacter thermophilus DSM
20745]
Length = 144
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +K ++ L+ G V+ + N I E+ V +
Sbjct: 66 LRDVEVELTAELGTARMQIKHILGLRPGSVVELNRLAGEPVDIMVNKTLIARGEVVVVDE 125
Query: 295 NYTIRITDRINFDQKS 310
+ +R+ + + +++
Sbjct: 126 KFAVRVVEIVPPERRL 141
>gi|16802742|ref|NP_464227.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|224501995|ref|ZP_03670302.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|255028594|ref|ZP_05300545.1| flagellar motor switch protein [Listeria monocytogenes LO28]
gi|284801030|ref|YP_003412895.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994172|ref|YP_003415940.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|16410089|emb|CAC98778.1| lmo0700 [Listeria monocytogenes EGD-e]
gi|284056592|gb|ADB67533.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059639|gb|ADB70578.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
Length = 515
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 83/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVDGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPIKHTVIEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|197285497|ref|YP_002151369.1| flagellar motor switch protein FliN [Proteus mirabilis HI4320]
gi|227355988|ref|ZP_03840380.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
gi|194682984|emb|CAR43416.1| flagellar motor switch protein [Proteus mirabilis HI4320]
gi|227163976|gb|EEI48878.1| flagellar motor switch protein [Proteus mirabilis ATCC 29906]
Length = 136
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K +++L G V+ + NG I E+ V
Sbjct: 54 NLIMDIPVKLTVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 113
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 114 SDKYGIRITDIITPSERM 131
>gi|212709504|ref|ZP_03317632.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
30120]
gi|212687842|gb|EEB47370.1| hypothetical protein PROVALCAL_00546 [Providencia alcalifaciens DSM
30120]
Length = 138
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K +++L G V+ + NG I E+ V
Sbjct: 56 DMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
NY IRITD I ++
Sbjct: 116 SDNYGIRITDIITPSERM 133
>gi|218887303|ref|YP_002436624.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758257|gb|ACL09156.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 180
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 37/93 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
++++ D + +++ + + + +++ L G V+ +
Sbjct: 84 EEAKSPRPDSGRRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEV 143
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + +R+TD I+ ++
Sbjct: 144 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 176
>gi|238798579|ref|ZP_04642056.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
gi|238717599|gb|EEQ09438.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
Length = 124
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 42 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 101
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 102 ADKYGVRITDIITPSERM 119
>gi|238924156|ref|YP_002937672.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|238875831|gb|ACR75538.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|291529030|emb|CBK94616.1| flagellar motor switch protein FliN [Eubacterium rectale M104/1]
Length = 404
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/291 (9%), Positives = 84/291 (28%), Gaps = 40/291 (13%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
S++ + + ++ +DIS + + ++ E
Sbjct: 129 LSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVV---DLKNTLNEG----------- 174
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ L ++ E + + + K +S +
Sbjct: 175 ------EIDSFLSEEFVKISF--HMEIGDLVDSEIMQLYPPAFVKEMCKGVSQNMELDTQ 226
Query: 152 TTQESSPNLEDFYD-------------IDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ E P + ++ N+ + NE + NMN
Sbjct: 227 SVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMMN 286
Query: 199 LIIPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ + ++ + + + ++ + + + + K ++ ++
Sbjct: 287 QNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISEI 346
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ G++I + NGK + E+ + +++ +RIT+ +N
Sbjct: 347 LDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397
>gi|319787092|ref|YP_004146567.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
11-1]
gi|317465604|gb|ADV27336.1| flagellar motor switch protein FliN [Pseudoxanthomonas suwonensis
11-1]
Length = 109
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +++++ L G VI + NG I E+ +
Sbjct: 30 ILDVPVTLSLEVGRTRMPIRNLLQLNQGSVIELERGAGEPLDVYVNGTLIAHGEVVVIND 89
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD ++ ++
Sbjct: 90 RFGVRLTDVVSPSERI 105
>gi|315648126|ref|ZP_07901227.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus vortex V453]
gi|315276772|gb|EFU40115.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus vortex V453]
Length = 419
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + +KD++ + G +I + N K I E+ +
Sbjct: 338 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 397
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD ++ + K
Sbjct: 398 DENFGVRVTDIVSQWDRIQK 417
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/210 (9%), Positives = 61/210 (29%), Gaps = 2/210 (0%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + VDI+ K S F + +
Sbjct: 42 QDALGEIGNITFGSAATALSTLLGKKVDITTPKVSIIKRSQFEEEFPKPHVAVHVTYVDG 101
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + + N + ++ + + + ++
Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPVEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D D+ + N +E + I+ + I + S+ + ++P
Sbjct: 162 NRFVNISPPGIDILDMANGEGVNNLPQDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ ++ + + ++
Sbjct: 222 VHMLINGTEEPQPAKQEAAPTVEAPVNTQE 251
>gi|238025699|ref|YP_002909930.1| flagellar motor switch protein FliN [Burkholderia glumae BGR1]
gi|237874893|gb|ACR27226.1| Flagellar motor switch protein FliN [Burkholderia glumae BGR1]
Length = 144
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 62 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 121
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 122 NDKFGIRLTDIITPSERIRK 141
>gi|149908776|ref|ZP_01897436.1| hypothetical protein PE36_21284 [Moritella sp. PE36]
gi|149808050|gb|EDM67991.1| hypothetical protein PE36_21284 [Moritella sp. PE36]
Length = 306
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 88/288 (30%), Gaps = 26/288 (9%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYK---KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHS 76
LG+++ + + + + + + + Y ++
Sbjct: 39 EKYDLLGERRQWTDCLEVINSDLSLAHREIERRLSQLFN---EYEYRITLQKFTHERVNP 95
Query: 77 FKENFVFSQASLSSWSS-NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLA 135
+ + +N ++ TL E LGA+ + + S E +L
Sbjct: 96 VDLGTNIIWLQAQNNVGLKVLLSINNAMLYTLTEIFLGAT-KPSNKDNLAQPSDSEYRLL 154
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
KR + L+ +S E + N + +EF + ++ TI+ S
Sbjct: 155 KRILTIQLDALDNQLSHHHEWT----------ISHTNQPTIGDEF-ISSTIDCTIKEYLS 203
Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
S+ + P+E + +T + + + ++ + NI+ + + L
Sbjct: 204 SWRIWYPKEFINQTLSSNRTKPDYELLAAKLANAA-----TNIPTNINVILAKTQLNLVQ 258
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ LK G I I + +++TD
Sbjct: 259 LTQLKSGDFIMMDLP--EIVSACTGNHVIAHGRVVVQSGRLVMQVTDT 304
>gi|330814982|ref|YP_004358687.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
gi|327367375|gb|AEA58731.1| Flagellar motor switch protein FliN [Burkholderia gladioli BSR3]
Length = 149
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 67 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 126
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 127 NDKFGIRLTDIITPSERIRK 146
>gi|313901461|ref|ZP_07834917.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
DSM 13965]
gi|313468267|gb|EFR63725.1| flagellar motor switch protein FliN [Thermaerobacter subterraneus
DSM 13965]
Length = 132
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 35/78 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + T+++++ + G V+ L NG+ I E+ +
Sbjct: 51 DLLLDVPLQLTVELGQTQRTVRELLEMAPGTVVELDRLAGEPVDLLVNGRLIARGEVVVI 110
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ IRITD ++ ++
Sbjct: 111 DENFGIRITDIVSPGERL 128
>gi|288573015|ref|ZP_06391372.1| flagellar motor switch protein FliN [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568756|gb|EFC90313.1| flagellar motor switch protein FliN [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 384
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + ++ +V++ G VI + NGK I E+ + +
Sbjct: 304 IADIPVRVTVELGRTRKSVGEVLSFAPGSVIELDKMAGEPVDVLVNGKLIAKGEVVVIDE 363
Query: 295 NYTIRITDRINFDQKS 310
N+ +R+T+ +N +K
Sbjct: 364 NFGVRVTEILNVGEKI 379
>gi|54308124|ref|YP_129144.1| flagellar motor switch protein [Photobacterium profundum SS9]
gi|46912550|emb|CAG19342.1| putative polar flagellar switch protein FliN [Photobacterium
profundum SS9]
Length = 129
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
++S S+D + V I + + ++++++ L G V+
Sbjct: 29 LEELVDESTPISDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|313610118|gb|EFR85441.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
Length = 515
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/286 (9%), Positives = 84/286 (29%), Gaps = 28/286 (9%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + ++ V ++ K L+ ++
Sbjct: 410 ETTTPAEIIEPEKPAESVHQAVIEEKETLSEMEQILEEIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
VI +L+ NG I L RV ++ I++T+ +
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 515
>gi|295097218|emb|CBK86308.1| flagellar motor switch protein FliN [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 127
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 2/124 (1%)
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ N + S + + + + + + V + +
Sbjct: 3 DMNNSSGSEDKSMDNLWGEALNEQNAAGSTEQTAV-PQFSEEM-NLILDIPVKMTVELGR 60
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
K T+K+++ L G V+ + NG I E+ V + IRITD I +
Sbjct: 61 TKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDKFGIRITDIITPSE 120
Query: 309 KSLK 312
+ +
Sbjct: 121 RMHR 124
>gi|182418484|ref|ZP_02949778.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
5521]
gi|237666685|ref|ZP_04526670.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182377866|gb|EDT75410.1| flagellar motor switch phosphatase FliY [Clostridium butyricum
5521]
gi|237657884|gb|EEP55439.1| flagellar motor switch phosphatase FliY [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 412
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 38/78 (48%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + K +++D++ L G +I + + NGK+I E+ V
Sbjct: 331 DLIMDVPLDISVVLGRTKKSIQDILNLGAGSLIELDKLAEEPVEILVNGKQIALGEVVVV 390
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT+ ++ ++
Sbjct: 391 DENFGVRITNIVSNVERL 408
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/248 (10%), Positives = 75/248 (30%), Gaps = 5/248 (2%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G+S+ + + + + T + + +G + + ++ V+I
Sbjct: 15 LSGESMDSEDRNVSSSSNENMEDAITE--TDKDLLGEIGNISMGSASTALYQLINQQVNI 72
Query: 61 SYTSCQSGKFSHIIHSFKEN-FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ I F+ V ++ + + + ++G +
Sbjct: 73 TTPVVSVTTLKEIKEGFETPNIVLDIEYIAGIVGRNILIIKTYDGLVISNLMMGGDGKIT 132
Query: 120 PQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
L + + + I + + + SP + + + +
Sbjct: 133 DVHELSELEISAVSEAMNQMIGSAATSMATMFGRKVDISPPTSRVVTDEGTPISESIPED 192
Query: 179 EFVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
+ + ++ MTI + V S+ + I P +T I +N+ +L + +
Sbjct: 193 QPIVKVSFKMTIGDIVDSNIMQIFPIKTAKNIVAIMTGEDVADDNKVGELEEQKDKLIVN 252
Query: 238 LNVNIDTR 245
++
Sbjct: 253 KEIHTQPE 260
>gi|212637765|ref|YP_002314290.1| hypothetical protein swp_5088 [Shewanella piezotolerans WP3]
gi|212559249|gb|ACJ31703.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 308
Score = 79.7 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 41/309 (13%), Positives = 85/309 (27%), Gaps = 28/309 (9%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ QS + P+ LL + + + + L I ++ +
Sbjct: 24 LVKQSNNVEVRPV--ALLKEKLARSRLLIQLTHCQRPMMDAVNELLNPIIRQGHHALSQV 81
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIP 120
S K I + + L G S +
Sbjct: 82 ----VMSAKSDAITPELHHAWFLLSYQRIELGWW---KIDKCTLDQLASGYYG-SFTSAA 133
Query: 121 QLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
+ R+ S E +L KR + L P + D L+ TN +
Sbjct: 134 KSPLRAPSQSEFRLVKRLMLAAINTL-----------PVADIDTDELELELITNTTPIKA 182
Query: 181 VTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
+N I ++ + + L ++ Q DL D A+ QL
Sbjct: 183 PVCCELNFPIAHIGPGIRFYMAEYLL-----GLMAEQPSQYQADPDLNDKLAKSLKQLPF 237
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + + + + LK+G ++P + + I+ + ++
Sbjct: 238 RVMLELGQQSIPVTGLQQLKVGDILPMNLHSRCPVT--VGKRPIFYATVHAHEGQMVAKL 295
Query: 301 TDRINFDQK 309
T ++
Sbjct: 296 TQEAFQTEE 304
>gi|291524889|emb|CBK90476.1| flagellar motor switch protein FliN [Eubacterium rectale DSM 17629]
Length = 404
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/291 (9%), Positives = 84/291 (28%), Gaps = 40/291 (13%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
S++ + + ++ +DIS + + ++ E
Sbjct: 129 LSAISEAMNQMMGSSATSLSSMLNRTIDISPPIAEVV---DLKNTLNEG----------- 174
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ L ++ E + + + K +S +
Sbjct: 175 ------EIDSFLSEEFVKISF--HMEIGELVDSEIMQLYPPAFVKEMCKGVSQNMELDTQ 226
Query: 152 TTQESSPNLEDFYD-------------IDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ E P + ++ N+ + NE + NMN
Sbjct: 227 SVTEDVPQSSNTATQAAPIQQPQDSGSMNNASANSQGMINENMMNSNMNSQNMMNQGMMN 286
Query: 199 LIIPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ + ++ + + + ++ + + + + K ++ ++
Sbjct: 287 QNMGAQNMIGNQVNVQNAQFTPFGAMPNQVYQPENIDLIMDVPLEVTVELGRTKKSISEI 346
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ G++I + NGK + E+ + +++ +RIT+ +N
Sbjct: 347 LDFGPGKIIELNKLAGEPIDILVNGKYVAKGEVVVIEESFGVRITEIVNSK 397
>gi|221635434|ref|YP_002523310.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Thermomicrobium
roseum DSM 5159]
gi|221157455|gb|ACM06573.1| flagellar motor switch phosphatase FliY (CheY-Pphosphatase fliY)
(Flagellar motor switch protein fliY) [Thermomicrobium
roseum DSM 5159]
Length = 128
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +K ++ L+ G V+ L+ N I E+ V +
Sbjct: 47 LRDVEVELTAELGSARMRIKHILGLRPGSVVELDRLAGEPVELTINKTLIARGEVVVVDE 106
Query: 295 NYTIRITDRINFDQKSLKN 313
+ +RIT+ ++ +++ +
Sbjct: 107 KFAVRITEIVSPEKRLAEG 125
>gi|74312486|ref|YP_310905.1| flagellar motor switch protein FliN [Shigella sonnei Ss046]
gi|73855963|gb|AAZ88670.1| FliN [Shigella sonnei Ss046]
Length = 137
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLISQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|297617151|ref|YP_003702310.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Syntrophothermus lipocalidus DSM 12680]
gi|297144988|gb|ADI01745.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Syntrophothermus lipocalidus DSM 12680]
Length = 400
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 35/78 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +N+ + + T+K+++ L G ++ + NGK I E+ + +
Sbjct: 321 IMDVPLNVSVELGRTRKTIKEILDLGPGSIVQLEKLAGEPVDILVNGKLIAKGEVVVIDE 380
Query: 295 NYTIRITDRINFDQKSLK 312
NY +R+T I+ + K
Sbjct: 381 NYGVRVTAIISPMDRVSK 398
>gi|54297704|ref|YP_124073.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Paris]
gi|53751489|emb|CAH12907.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
Paris]
Length = 111
Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ +Q N + V++ I K T+++++ L G ++
Sbjct: 6 ETSAEQLNQNQGNPLNPDSGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVA 63
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + E+ V + +R+TD ++ ++
Sbjct: 64 LDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 107
>gi|288553052|ref|YP_003424987.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
gi|288544212|gb|ADC48095.1| flagellar motor switch protein [Bacillus pseudofirmus OF4]
Length = 420
Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 20/198 (10%), Positives = 56/198 (28%), Gaps = 18/198 (9%)
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
++ + + + L + + I + N V + M
Sbjct: 220 IDSNIMQLVTVTFAKRLVDDLMNPAPIDGDFLGEEVIPEMPANEPPAEKSEVHSRRSEMP 279
Query: 190 IENVASSFVLIIPQETLLKTTLI--SLSSQNKSENQS---------------EDLIDPFA 232
+ + Q +T S + +
Sbjct: 280 QNDRSHHVDQSFEQPIHERTREQQHIGSGMHGGREVDVQPAAFSHFEPQPLSNHESKNLS 339
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + K ++K+++ L G +I + N K I E+ +
Sbjct: 340 M-LLDIPLQVTVELGRTKRSIKEILELGQGSIIELDKLAGEPVDILVNQKLIAKGEVVVI 398
Query: 293 GKNYTIRITDRINFDQKS 310
+++ +R+TD ++ + +
Sbjct: 399 EESFGVRVTDIVSQEDRI 416
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/167 (8%), Positives = 49/167 (29%), Gaps = 1/167 (0%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ +G + ++ V+I+ + + + F +
Sbjct: 53 SDIEQDALGEIGNISFGSAATALSTLLNQKVEITTPTLSLVESKELPAEFPQPHVAVHVE 112
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + + +LG + + ++ + + S +
Sbjct: 113 YTEGFEGMNLLVIKTGDAAIIADLMLGGDGTNPASDLSDMHVSAVQEAMNQMMGSASTSM 172
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENV 193
+ + + SP D D+ + +N ++ + I+ + I +
Sbjct: 173 STVFNKRVDISPPGIDLMDLKHNVGTSNVPEDQILVKISFRLKIGEL 219
>gi|300717239|ref|YP_003742042.1| flagellar motor switch protein [Erwinia billingiae Eb661]
gi|299063075|emb|CAX60195.1| Flagellar motor switch protein [Erwinia billingiae Eb661]
Length = 133
Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 51 DLIMDIPVKLTVELGRTKMTIKELLRLTQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 110
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 111 ADKYGVRITDIITPTERM 128
>gi|134095085|ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans]
gi|55977143|gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans]
gi|133738988|emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans]
Length = 141
Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 61 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 120
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 121 KFGIRLTDIITPSERIRK 138
>gi|329929333|ref|ZP_08283086.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
gi|328936702|gb|EGG33145.1| flagellar motor switch protein FliN [Paenibacillus sp. HGF5]
Length = 420
Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + +KD++ + G +I + N K I E+ +
Sbjct: 339 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 398
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD ++ + K
Sbjct: 399 DENFGVRVTDIVSQWDRIQK 418
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 2/196 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + VDI+ K S F + +
Sbjct: 42 QDALGEIGNITFGSAATALSTLLGKKVDITTPRVSIIKRSEFEEEFPKPHVAVHVKYVDG 101
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + + N + ++ + + + ++
Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPVEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D ++ + N +E + I+ + I + S+ + ++P
Sbjct: 162 NRFVNISPPGIDILNMANGEGVNNLPPDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221
Query: 210 TLISLSSQNKSENQSE 225
+ ++ + + +
Sbjct: 222 VHMLINGTEEPQPAKQ 237
>gi|251797431|ref|YP_003012162.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. JDR-2]
gi|247545057|gb|ACT02076.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. JDR-2]
Length = 421
Score = 79.3 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + +KD++ L G +I + N K I E+ +
Sbjct: 340 NLLLDIPLKVTVELGRTQKQIKDILELSQGSIIELDKLAGEPVDILVNNKLIAKGEVVVI 399
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD ++ + K
Sbjct: 400 DENFGVRVTDIVSQWDRIQK 419
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 2/191 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + VDI+ K + + F + S +
Sbjct: 44 QDALGEIGNITFGSAATALSTLLGKKVDITTPQVTFIKREDLANEFPKPHVAVSVQYVDG 103
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + Q N + ++ + + + ++
Sbjct: 104 FQGINSLVIKTKDAQVIADLMLGGEGDVTLQELNEIHISAVQEAMNQMMGSSATSMSTIF 163
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D D+D + + I+ +TI + + S+ + ++P +
Sbjct: 164 NRFVNISPPGIDILDVDSGGGMGQLPTEDVFIKISFRLTIGDLIDSTIMQLLPVPFAKQM 223
Query: 210 TLISLSSQNKS 220
I + +
Sbjct: 224 VAILMGDVEEE 234
>gi|256004796|ref|ZP_05429771.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 2360]
gi|255991246|gb|EEU01353.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 2360]
gi|316940765|gb|ADU74799.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum DSM 1313]
Length = 406
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/303 (10%), Positives = 82/303 (27%), Gaps = 25/303 (8%)
Query: 21 LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74
+ G G K E S++ + + + +DIS +
Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKAFPMTLDAAV 175
Query: 75 HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ F S + ++ N++ + E + +
Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S V++ +A + Q Q + Y Y + + +
Sbjct: 236 SAVQEPVAGQHNEQYYHAQPSQQPYQQPPQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPP 295
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + + + + + + + + +
Sbjct: 296 RQNDGYRNPINV------------QPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 343
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+KD++ G +I + NGK I E+ + +++ +RITD ++
Sbjct: 344 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 403
Query: 308 QKS 310
++
Sbjct: 404 KRL 406
Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G S N + +G + + V I
Sbjct: 14 LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + ++V + + + + + ++G
Sbjct: 65 TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + + I + ++ + + SP +D +
Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKAFPMTLDAAVPEAEFPRGD 184
Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
+ + M I + S + ++P + K ++S+ + E+
Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232
>gi|94314218|ref|YP_587427.1| flagellar motor switch FliN [Cupriavidus metallidurans CH34]
gi|93358070|gb|ABF12158.1| Flagellar motor switch FliN [Cupriavidus metallidurans CH34]
Length = 156
Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 76 ILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVVND 135
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 136 KFGIRLTDIITPSERIRK 153
>gi|261407971|ref|YP_003244212.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. Y412MC10]
gi|261284434|gb|ACX66405.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Paenibacillus sp. Y412MC10]
Length = 420
Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + +KD++ + G +I + N K I E+ +
Sbjct: 339 NLLMDIPLKVTVELGRTQKQIKDILEMSQGSIIELDKLAGEPVDILVNHKLIAKGEVVVI 398
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD ++ + K
Sbjct: 399 DENFGVRVTDIVSQWDRIQK 418
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 2/196 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + VDI+ K S F + +
Sbjct: 42 QDALGEIGNITFGSAATALSTLLGKKVDITTPRVSIIKRSEFEEEFPKPHVAVHVKYVDG 101
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + +LG + + N + ++ + + + ++
Sbjct: 102 FEGINSLVIKTRDAQVIADLMLGGEGNPMEEELNEIHISAVQEAMNQMMGSSATSMSTIF 161
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ SP D ++ + N +E + I+ + I + S+ + ++P
Sbjct: 162 NRFVNISPPGIDILNMANGEGVNNLPPDETLIKISFRLIIGELIDSTIMQLLPVHFSKDM 221
Query: 210 TLISLSSQNKSENQSE 225
+ ++ + + +
Sbjct: 222 VHMLINGTEEPQPAKQ 237
>gi|27904579|ref|NP_777705.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46395831|sp|Q89AZ4|FLIM_BUCBP RecName: Full=Flagellar motor switch protein FliM
gi|27903976|gb|AAO26810.1| flagellar motor switch protein FliM [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 331
Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 85/273 (31%), Gaps = 13/273 (4%)
Query: 35 SSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSN 94
++ + K K E D+D IS+ KF +I + K N + +S +
Sbjct: 44 LENMHECFLKQFTKHISEYSDVDCKISFYKFIIQKFKNIKKNIKNNSISDCFEISPYKKL 103
Query: 95 FFIGCSNNLVITLLENLLGA-SHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
I S+N+ L+E L G + + L+ + K+ I +
Sbjct: 104 GIIFVSDNISDYLIEYLFGGCELKNSSNGLFKKLTLSTINIVKKMFKIILEQYYFLWNKV 163
Query: 154 --QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL---LK 208
+ L +++ + S + T + I N + +P
Sbjct: 164 SLCKMKLILNRLQNLNEISNVNFINSKDTFVTFLFRLRIANKFGMLGICLPTSLSFQCNN 223
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL-----NVNIDTRINLKKTTLKDVVTLKIGQ 263
++ + + ++ +Q+ + + + TL ++ K+G
Sbjct: 224 EADVNSVHNVSHISYDNVVNTEIRKRLFQVIVYNCKIVLKIVLIENYITLSKIIAFKVGD 283
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
++P + + + I + Y
Sbjct: 284 ILPIHMLDN--VVAYSENVPILIGKYKMFKNKY 314
>gi|317151985|ref|YP_004120033.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
Aspo-2]
gi|316942236|gb|ADU61287.1| flagellar motor switch protein FliN [Desulfovibrio aespoeensis
Aspo-2]
Length = 174
Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K + +++ L G V+ + NGK + E + +
Sbjct: 95 ILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE 154
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 155 KFGIRLTDIISPIERV 170
>gi|257457605|ref|ZP_05622772.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
35580]
gi|257444991|gb|EEV20067.1| flagellar motor switch protein FliY [Treponema vincentii ATCC
35580]
Length = 382
Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + +K+++++ G +I + N K I E+ + +
Sbjct: 304 IMDVFMEMTVELGRTRKMIKEILSMGEGHIIELDKLAGEPVDILVNHKPIAKGEVVVIDE 363
Query: 295 NYTIRITDRINFDQKSLK 312
N+ +R+T+ ++ ++
Sbjct: 364 NFGVRVTEILSPAERISD 381
>gi|218133676|ref|ZP_03462480.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
43243]
gi|217991051|gb|EEC57057.1| hypothetical protein BACPEC_01545 [Bacteroides pectinophilus ATCC
43243]
Length = 197
Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 36/100 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q + + S + + + + T+KD++ G +I
Sbjct: 98 DVNVQPAAFQPFAGDLSALSQKENIDLIMDVPLEVTVELGRTSKTIKDILEFAPGTIIEL 157
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ NGK + E+ + +N+ +RIT+ I
Sbjct: 158 NKIAGESVDVLVNGKNVAKGEVVVIEENFGVRITEIIKEQ 197
>gi|116872089|ref|YP_848870.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740967|emb|CAK20087.1| flagellar motor switch domain protein [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 512
Score = 78.9 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/283 (9%), Positives = 83/283 (29%), Gaps = 25/283 (8%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGIVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L+ +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLMLAIQAKEVAEK 409
Query: 223 --------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ ++ + + + V ++ K L+ ++
Sbjct: 410 EEATTLTAAVEPEKPVEPVVEEKETLSEMEQILEDIPVTLEVVFGTAKVKLEKFISWCEK 469
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
V+ +L+ NG I L RV ++ I++T+ +
Sbjct: 470 DVVILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMTELVR 512
>gi|220903654|ref|YP_002478966.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867953|gb|ACL48288.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 190
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ + + + +++ L G V+ + NGK + E + +
Sbjct: 111 ILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVYVNGKLVARGEAVVINE 170
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD I+ ++
Sbjct: 171 KFGVRLTDIISPIERV 186
>gi|261821165|ref|YP_003259271.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
WPP163]
gi|261605178|gb|ACX87664.1| flagellar motor switch protein FliN [Pectobacterium wasabiae
WPP163]
Length = 137
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD + ++
Sbjct: 115 SDKYGVRITDIMTPSERM 132
>gi|253990102|ref|YP_003041458.1| flagellar motor switch protein FliN [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781552|emb|CAQ84715.1| flagellar motor switch protein flin [Photorhabdus asymbiotica]
Length = 144
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K ++ L G V+ + NG I E+ V
Sbjct: 62 DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 121
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 122 SDKYGIRITDIITPSERM 139
>gi|323700137|ref|ZP_08112049.1| flagellar motor switch protein FliN [Desulfovibrio sp. ND132]
gi|323460069|gb|EGB15934.1| flagellar motor switch protein FliN [Desulfovibrio desulfuricans
ND132]
Length = 183
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K + +++ L G V+ + NGK + E + +
Sbjct: 104 ILDIPLEVSAELGRTKLLINELLQLGQGSVVELNKLAGEPLEIYVNGKLVARGEAVVINE 163
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 164 KFGIRLTDIISPIERV 179
>gi|304311108|ref|YP_003810706.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
gi|301796841|emb|CBL45053.1| Flagellar motor switch FliN [gamma proteobacterium HdN1]
Length = 137
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + ++++++ L G VI + NG I E+ V +
Sbjct: 58 ILDIPVTLSMEVGSTNISIRNLLQLNQGSVIELDRLAGEPLDVMVNGTLIAHGEVVVVNE 117
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 118 KFGIRLTDVISPQERIKK 135
>gi|37525863|ref|NP_929207.1| flagellar motor switch protein FliN [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36785292|emb|CAE14233.1| Flagellar motor switch protein FliN [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 139
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K ++ L G V+ + NG I E+ V
Sbjct: 57 DLILDIPVKLSVELGRTKMTIKQLLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVV 116
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRITD I ++
Sbjct: 117 SDKYGIRITDIITPSERM 134
>gi|107100878|ref|ZP_01364796.1| hypothetical protein PaerPA_01001908 [Pseudomonas aeruginosa PACS2]
Length = 151
Score = 78.9 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + ++++++ L G VI + NG I E+ V +
Sbjct: 72 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 131
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 132 KFGIRLTDVISPSERIKK 149
>gi|53723901|ref|YP_104281.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
23344]
gi|52427324|gb|AAU47917.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
23344]
Length = 124
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 42 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 101
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 102 NDKFGIRLTDIITPSERIRK 121
>gi|83949668|ref|ZP_00958401.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM]
gi|83837567|gb|EAP76863.1| hypothetical protein ISM_01200 [Roseovarius nubinhibens ISM]
Length = 339
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/297 (8%), Positives = 72/297 (24%), Gaps = 16/297 (5%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSL--GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF 70
+ + + + + ++ + L K + L + +S
Sbjct: 1 MDSVATDTVKHRKARAAREGFDARAMSPAKALRVGLGKAADGTLGLALSVSTVEQSRLSQ 60
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+ + + + ++E + R L+
Sbjct: 61 KDLPEVLAGTGLTCLVEDDRGR-RGAVRLDFPALSAVIEIQTIGRVAEREVVE-RPLTRT 118
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY--DIDYLKKNTNRLSNEFVTTINMNM 188
+ L + + + + + + L + + +
Sbjct: 119 DAALCAPLLDAVFEAFETGAEDLPDGQSWQGYRFGAMAEDAHSLSLALEADHYHLFRVGV 178
Query: 189 TIEN--VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
+ A + L++P + + + D + V + +
Sbjct: 179 MLGEAKRAGVYELLLPVMD-------APQVSKEKPGRPRDEPRALSPVVMGAPVTLQAIL 231
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRITD 302
L+ ++LK G + L A G + LG+V IR+
Sbjct: 232 ARHSIPLEKALSLKAGDQLIVPGSGAMALRLEAPGGHLVSDGRLGQVNGMRAIRLRK 288
>gi|317492416|ref|ZP_07950845.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919755|gb|EFV41085.1| flagellar motor switch protein FliN [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 145
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 63 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 122
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 123 ADKFGVRITDIITPSERM 140
>gi|149908449|ref|ZP_01897112.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
gi|149808612|gb|EDM68547.1| putative polar flagellar switch protein FliN [Moritella sp. PE36]
Length = 127
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
N S + + V I + K ++++++ L G V+
Sbjct: 27 LEDFSNDDNAFSPEQQHKL-DSILDIPVVISMEVGRSKISIRNLLQLNQGSVVELDRIAG 85
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 86 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125
>gi|333003042|gb|EGK22596.1| flagellar motor switch protein fliN [Shigella flexneri VA-6]
Length = 137
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILNNGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 115 ADKYGVRITDIITPSERM 132
>gi|161523222|ref|YP_001578234.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
17616]
gi|189348921|ref|YP_001944549.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221214538|ref|ZP_03587508.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
gi|160340651|gb|ABX13737.1| flagellar motor switch protein FliN [Burkholderia multivorans ATCC
17616]
gi|189332943|dbj|BAG42013.1| flagellar motor switch protein [Burkholderia multivorans ATCC
17616]
gi|221165428|gb|EED97904.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD1]
Length = 159
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 77 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 136
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 137 NDKFGIRLTDIITPSERIRK 156
>gi|547912|sp|P35539|FLIN_PECCC RecName: Full=Flagellar motor switch protein FliN; AltName:
Full=Flagellar motor switch protein MopA
Length = 106
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 24 DLILDIPVKLTVELGRTKMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 83
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 84 SDKYGVRITDIITPSERM 101
>gi|87119475|ref|ZP_01075372.1| flagellar motor switch protein [Marinomonas sp. MED121]
gi|86164951|gb|EAQ66219.1| flagellar motor switch protein [Marinomonas sp. MED121]
Length = 150
Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 30/79 (37%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ V + + +++++ L G V+ + NG I E+
Sbjct: 68 MDLIMDIPVTLSMELGSTSIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVV 127
Query: 292 VGKNYTIRITDRINFDQKS 310
V Y IR+TD ++ ++
Sbjct: 128 VNDKYGIRLTDVVSPSERI 146
>gi|296103631|ref|YP_003613777.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058090|gb|ADF62828.1| Flagellar motor switch protein fliN [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 127
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ V + + K T+K+++ L G V+ + NG I E+
Sbjct: 44 MNLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVV 103
Query: 292 VGKNYTIRITDRINFDQKSLK 312
V + IRITD I ++ +
Sbjct: 104 VSDKFGIRITDIITPSERMHR 124
>gi|256830497|ref|YP_003159225.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
4028]
gi|256579673|gb|ACU90809.1| flagellar motor switch protein FliN [Desulfomicrobium baculatum DSM
4028]
Length = 188
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + ++ K + +++ L G VI + NGK + E + +
Sbjct: 109 ILDIPLEVSAQLGSTKLLINELLQLGQGSVIELNKLAGEPLEILVNGKLVARGEAVVINE 168
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD I+ ++
Sbjct: 169 KFGVRLTDIISPIERV 184
>gi|309388832|gb|ADO76712.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Halanaerobium praevalens DSM 2228]
Length = 417
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 33/81 (40%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + + R+ ++D++ L G +I L NGK + E+
Sbjct: 336 MELIKDVPLEVTVRLGKTVMKIRDILDLGDGSIIELDKLAGEPVDLLVNGKLVAKGEVVV 395
Query: 292 VGKNYTIRITDRINFDQKSLK 312
+ +N+ R+ D I+ ++ K
Sbjct: 396 IDENFGFRVKDIISPAERLSK 416
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/172 (7%), Positives = 46/172 (26%), Gaps = 9/172 (5%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS- 87
+ + + +D V+I+ + F +I + + V +
Sbjct: 45 SEEIDVIGEVNNIAMGSSATALSTLLDEKVEITTPEVEVQTFKQLIEEYDKPCVLVKVEY 104
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + ++G + + L+ + + Q+ +
Sbjct: 105 VEGIEGLSLLVIDTKDAAVIADLMMGGDG--LEGMDQEMLNEISISAVGEAMNQMMGAAS 162
Query: 148 QCISTTQESSPNLEDFYDI------DYLKKNTNRLSNEFVTTINMNMTIENV 193
+S + N+ + E + + + + +V
Sbjct: 163 TAMSNILDVLVNISPPTAEFIDLDDVIEEGRDWFDPAEEIVVTSFKLKVGDV 214
>gi|281417210|ref|ZP_06248230.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum JW20]
gi|281408612|gb|EFB38870.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium thermocellum JW20]
Length = 398
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 77/303 (25%), Gaps = 33/303 (10%)
Query: 21 LTGKLGDKKTIEKI---SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII 74
+ G G K E S++ + + + +DIS +
Sbjct: 116 MMGGDGSNKEGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAV 175
Query: 75 HSFKEN-------FVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
+ F S + ++ N++ + E + +
Sbjct: 176 PEAEFPRGDKIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEEVAA 235
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN 187
S V++ +A + Q P + + +
Sbjct: 236 SAVQEPVAGQHNEQYYHA-------QPSQQPYQQPYQQPYHQPYQQQYQQYYQPYEQPPR 288
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
+ + + + + + + +
Sbjct: 289 QNDGYR-------------NPINVQPAQFEAFDDGSKISIDKKNIGLIMDVPLQVTVELG 335
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+KD++ G +I + NGK I E+ + +++ +RITD ++
Sbjct: 336 RTNKLIKDILEFGPGSIIELDKLAGEPVDILVNGKVIAIGEVVVIDESFGVRITDILHPS 395
Query: 308 QKS 310
++
Sbjct: 396 KRL 398
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/228 (8%), Positives = 59/228 (25%), Gaps = 11/228 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ G S N + +G + + V I
Sbjct: 14 LNGSSSEGN---------EENSANEELTSQEIDALGEIGNISMGTSATTLNSLLGQRVVI 64
Query: 61 SYTSCQSGKFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETI 119
+ + + + ++V + + + + + ++G
Sbjct: 65 TTPKVSVCTWEELAKEYHSSYVAVKVEYTEGLDGMNLLLLKEDDAKVITDLMMGGDGSNK 124
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
+ + + I + ++ + + SP +D +
Sbjct: 125 EGELTDLHLSAISEAMNQMIGSAATSMSSMFNKRIDISPPKVFPMTLDAAVPEAEFPRGD 184
Query: 180 FVTTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSED 226
+ + M I + S + ++P + K ++S+ + E+
Sbjct: 185 KIVKVAFKMVIGELIDSQIMQLLPIDFAKKMVSNIMNSKPEDNQVIEE 232
>gi|299822276|ref|ZP_07054162.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
gi|299815805|gb|EFI83043.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
Length = 518
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 32/283 (11%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V ++ + Q + + + S+ S +
Sbjct: 238 STVLSKLLNRKVTLAIPTAQVIDSKEF-DYPERPCIVTTVEFVEGLKSSNTFIISKQAAL 296
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQIS----AVLNQCISTTQESSPNL- 160
+ +LG + E + L+ +E + + Q+ +++ + + SP +
Sbjct: 297 VMANLMLGGTGE---VDEDAELTELELSAMQEVMNQMMGYSATAMSEMLGKKIDISPPIV 353
Query: 161 EDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
E D + + + + + + P+ + LS Q +
Sbjct: 354 EVCNVGDAMIQKDIDGGKTVEVIFPLEVESLIKTPMYQIFNPELAKE-IAHMMLSVQEEV 412
Query: 221 ENQSEDLI---------------------DPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + ++ K L D +T
Sbjct: 413 QAETPVEEVVETPPAEPIQVEKATPQISTTETEAVIDSIPITLEVIFGTAKVKLADFITW 472
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ + L ANG I S L RV ++ I+IT+
Sbjct: 473 CEKDIVILKESYEQPLSLLANGIHIGSGTLVRVNDHFGIKITE 515
>gi|119899014|ref|YP_934227.1| flagellar motor switch FliN [Azoarcus sp. BH72]
gi|119671427|emb|CAL95340.1| flagellar motor switch FliN [Azoarcus sp. BH72]
Length = 159
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K ++++++ L G V+ + NG I E+ V
Sbjct: 77 DMILDIPVQLTVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVVVV 136
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 137 NDKFGIRLTDIITPAERMRK 156
>gi|329901243|ref|ZP_08272768.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
IMCC9480]
gi|327549175|gb|EGF33767.1| Flagellar motor switch protein FliN [Oxalobacteraceae bacterium
IMCC9480]
Length = 137
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 32/78 (41%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 57 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 116
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 117 KFGIRLTDIISPAERIKK 134
>gi|303326579|ref|ZP_07357022.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
gi|302864495|gb|EFL87426.1| flagellar motor switch protein FliN [Desulfovibrio sp. 3_1_syn3]
Length = 194
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+ + L + +++ + + + +++ L G V+ +
Sbjct: 100 SRQPRDNKLKREL-DFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVY 158
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + +R+TD I+ ++
Sbjct: 159 VNGKLVARGEAVVINEKFGVRLTDIISPIERV 190
>gi|332533118|ref|ZP_08408987.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037400|gb|EGI73854.1| flagellar motor switch protein FliN [Pseudoalteromonas haloplanktis
ANT/505]
Length = 132
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 1/111 (0%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P ++ + S D + V I + K +++++ L
Sbjct: 21 PDDSGEAHVAELDELSDSKHEMSGDEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQ 79
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 80 GSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130
>gi|46578463|ref|YP_009271.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603953|ref|YP_968353.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
gi|46447874|gb|AAS94530.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564182|gb|ABM29926.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris DP4]
gi|311232391|gb|ADP85245.1| flagellar motor switch protein FliN [Desulfovibrio vulgaris RCH1]
Length = 170
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 35/93 (37%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+S D + +++ + + + +++ L G V+ +
Sbjct: 74 EESRAPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEV 133
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + +R+TD I+ ++
Sbjct: 134 FVNGKLVARGEAVVINEKFGVRLTDIISPIERV 166
>gi|288942629|ref|YP_003444869.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
180]
gi|288898001|gb|ADC63837.1| flagellar motor switch protein FliN [Allochromatium vinosum DSM
180]
Length = 148
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I I + +++++ L G V+ + NG I E+ V +
Sbjct: 69 VLDVPVTISMEIGRTRIPIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 128
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 129 KFGIRLTDVISPSERVRK 146
>gi|85707184|ref|ZP_01038271.1| possible flagellar switch protein FliM [Roseovarius sp. 217]
gi|85668343|gb|EAQ23217.1| possible flagellar switch protein FliM [Roseovarius sp. 217]
Length = 342
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/261 (9%), Positives = 76/261 (29%), Gaps = 14/261 (5%)
Query: 45 FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
L ++ L + ++ + + + + ++ + + +
Sbjct: 39 ALARVADSLFGLGITVATVEQMRLPLAEVAQHVSDEGLLVHLDGAA-GTRGALCLDPQFL 97
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SSPNLED 162
L+E + R+ + + + I + A + ++ E +
Sbjct: 98 AGLIEVQTTGAVR-PAVARPRAATRTDAAMVAPLIDAVMAEFDSQMTAEVEGYLARGFSF 156
Query: 163 FYDIDYLKKNTNR--LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKS 220
++ ++ + + + + +++ LL +
Sbjct: 157 GDLVEDMRALSLVLLAPDYDLLRLTVDLGPGAKTGHLD-------LLLPVVPLPVRAAPG 209
Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSA 279
D P + V +D + + L+DV K G ++P ++
Sbjct: 210 VGALGDGSAPLDQVVRTAPVVLDAVMGRLRLPLRDVWAFKPGDLVPIPREALGETQLVGT 269
Query: 280 NGKEIYSCELGRVGKNYTIRI 300
G + +LG++ +R+
Sbjct: 270 KGHIVAIAQLGQMNGWRALRL 290
>gi|73539703|ref|YP_300070.1| Type III secretion system outer membrane O protein [Ralstonia
eutropha JMP134]
gi|72123040|gb|AAZ65226.1| Type III secretion system outer membrane O protein [Ralstonia
eutropha JMP134]
Length = 142
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 60 EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 119
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 120 NDKFGIRLTDIITPSERIRK 139
>gi|157371195|ref|YP_001479184.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
gi|157322959|gb|ABV42056.1| flagellar motor switch protein FliN [Serratia proteamaculans 568]
Length = 137
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDIMINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 115 ADKFGVRITDIITPSERM 132
>gi|206561842|ref|YP_002232607.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
J2315]
gi|198037884|emb|CAR53828.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
J2315]
Length = 151
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 69 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 128
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 129 NDKFGIRLTDIITPAERIRK 148
>gi|15596641|ref|NP_250135.1| flagellar motor switch protein [Pseudomonas aeruginosa PAO1]
gi|116049389|ref|YP_791808.1| flagellar motor switch protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|218892683|ref|YP_002441552.1| flagellar motor switch protein [Pseudomonas aeruginosa LESB58]
gi|254234543|ref|ZP_04927866.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
gi|254239794|ref|ZP_04933116.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
gi|296390189|ref|ZP_06879664.1| flagellar motor switch protein [Pseudomonas aeruginosa PAb1]
gi|313106443|ref|ZP_07792674.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
gi|12230926|sp|Q51466|FLIN_PSEAE RecName: Full=Flagellar motor switch protein FliN
gi|9947395|gb|AAG04833.1|AE004574_4 flagellar motor switch protein FliN [Pseudomonas aeruginosa PAO1]
gi|115584610|gb|ABJ10625.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126166474|gb|EAZ51985.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa C3719]
gi|126193172|gb|EAZ57235.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 2192]
gi|218772911|emb|CAW28723.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa LESB58]
gi|310879176|gb|EFQ37770.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa 39016]
Length = 157
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + ++++++ L G VI + NG I E+ V +
Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 138 KFGIRLTDVISPSERIKK 155
>gi|167585019|ref|ZP_02377407.1| flagellar motor switch protein FliN [Burkholderia ubonensis Bu]
Length = 163
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 81 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 140
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 141 NDKFGIRLTDIITPSERIRK 160
>gi|152985227|ref|YP_001349237.1| flagellar motor switch protein [Pseudomonas aeruginosa PA7]
gi|150960385|gb|ABR82410.1| flagellar motor switch protein FliN [Pseudomonas aeruginosa PA7]
Length = 157
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + ++++++ L G VI + NG I E+ V +
Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 138 KFGIRLTDVISPSERIKK 155
>gi|167560938|ref|ZP_02353854.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
EO147]
gi|167568198|ref|ZP_02361072.1| flagellar motor switch protein FliN [Burkholderia oklahomensis
C6786]
Length = 162
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 80 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 139
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 140 NDKFGIRLTDIITPSERIRK 159
>gi|293395595|ref|ZP_06639878.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
gi|291421914|gb|EFE95160.1| flagellar motor switch protein FliN [Serratia odorifera DSM 4582]
Length = 138
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 56 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 115
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 116 ADKFGVRITDIITPSERM 133
>gi|662862|gb|AAA79754.1| flagellar protein [Pseudomonas aeruginosa]
Length = 157
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + ++++++ L G VI + NG I E+ V +
Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 137
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 138 KFGIRLTDVISPSERIKK 155
>gi|237653570|ref|YP_002889884.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
gi|237624817|gb|ACR01507.1| flagellar motor switch protein FliN [Thauera sp. MZ1T]
Length = 155
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + K ++++++ L G V+ + NG I E+ V
Sbjct: 73 DMILDIPVQITVELGRTKLSIRNLLQLAHGSVVELDGLAGEPMDVLVNGTLIAQGEVVVV 132
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 133 NDKFGIRLTDIITPAERMRK 152
>gi|221201777|ref|ZP_03574814.1| flagellar motor switch protein FliN [Burkholderia multivorans
CGD2M]
gi|221207718|ref|ZP_03580726.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
gi|221172564|gb|EEE05003.1| flagellar motor switch protein FliN [Burkholderia multivorans CGD2]
gi|221178197|gb|EEE10607.1| flagellar motor switch protein FliN [Burkholderia multivorans
CGD2M]
Length = 159
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 77 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 136
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 137 NDKFGIRLTDIITPSERIRK 156
>gi|77165629|ref|YP_344154.1| surface presentation of antigens (SPOA) protein [Nitrosococcus
oceani ATCC 19707]
gi|254434523|ref|ZP_05048031.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
gi|76883943|gb|ABA58624.1| Surface presentation of antigens (SPOA) protein [Nitrosococcus
oceani ATCC 19707]
gi|207090856|gb|EDZ68127.1| flagellar motor switch protein FliN [Nitrosococcus oceani AFC27]
Length = 143
Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + I + ++++++ L G V+ + NG I EL V
Sbjct: 62 ELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVV 121
Query: 293 GKNYTIRITDRINFDQKS 310
+ + IR+TD I+ ++
Sbjct: 122 NEKFGIRLTDVISASERV 139
>gi|116694516|ref|YP_728727.1| flagellar motor switch protein/type III secretory pathway protein
[Ralstonia eutropha H16]
gi|113529015|emb|CAJ95362.1| flagellar motor switch protein/type III secretory pathway protein
[Ralstonia eutropha H16]
Length = 149
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 67 EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 126
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD I ++
Sbjct: 127 NDKFGIRLTDIITPSERI 144
>gi|270262389|ref|ZP_06190660.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
gi|270043073|gb|EFA16166.1| flagellar motor switch protein FliN [Serratia odorifera 4Rx13]
Length = 137
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 55 DLILDIPVKLTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
+ +RITD I ++
Sbjct: 115 ADKFGVRITDIITPSERM 132
>gi|312876510|ref|ZP_07736493.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor lactoaceticus 6A]
gi|311796721|gb|EFR13067.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor lactoaceticus 6A]
Length = 375
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ E + + + + I + + +++++ G +I
Sbjct: 281 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 339
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RITD +N +
Sbjct: 340 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ + +G + ++ V+I+ K+ + F
Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSILKWEELPKEFPVPYVAIKVV 86
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
+ V + + ++G + E +L LS +++ + + S
Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145
Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
L+ ++ + +P + + + + + + MTI + + S + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
P + + L + + Q E +
Sbjct: 206 PVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKE 241
>gi|78358624|ref|YP_390073.1| surface presentation of antigens (SPOA) protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78221029|gb|ABB40378.1| Surface presentation of antigens (SPOA) protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 175
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 37/93 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
++++ D + +++ + + + +++ L G V+ +
Sbjct: 79 EEAKSPRPDSGKRELDFILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEI 138
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NGK + E + + + +R+TD I+ ++
Sbjct: 139 YVNGKLVARGEAVVINEKFGVRLTDIISPIERV 171
>gi|67641903|ref|ZP_00440668.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
4]
gi|121599067|ref|YP_994774.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
gi|124384349|ref|YP_001027841.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10229]
gi|126449143|ref|YP_001082211.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10247]
gi|167000455|ref|ZP_02266269.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
gi|167717396|ref|ZP_02400632.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
DM98]
gi|167736439|ref|ZP_02409213.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 14]
gi|167813513|ref|ZP_02445193.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 91]
gi|167822055|ref|ZP_02453526.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 9]
gi|167843668|ref|ZP_02469176.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
B7210]
gi|167900651|ref|ZP_02487856.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
13177]
gi|167908871|ref|ZP_02495962.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 112]
gi|167916910|ref|ZP_02504001.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
BCC215]
gi|226193338|ref|ZP_03788948.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pakistan 9]
gi|121227877|gb|ABM50395.1| flagellar motor switch protein FliN [Burkholderia mallei SAVP1]
gi|124292369|gb|ABN01638.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10229]
gi|126242013|gb|ABO05106.1| flagellar motor switch protein FliN [Burkholderia mallei NCTC
10247]
gi|225934938|gb|EEH30915.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pakistan 9]
gi|238522916|gb|EEP86358.1| flagellar motor switch protein FliN [Burkholderia mallei GB8 horse
4]
gi|243063643|gb|EES45829.1| flagellar motor switch protein FliN [Burkholderia mallei PRL-20]
Length = 162
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 80 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 139
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 140 NDKFGIRLTDIITPSERIRK 159
>gi|330839523|ref|YP_004414103.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Selenomonas sputigena ATCC 35185]
gi|329747287|gb|AEC00644.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Selenomonas sputigena ATCC 35185]
Length = 394
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K T+KD++ L G ++ + NGK + E+ + +
Sbjct: 315 ILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDE 374
Query: 295 NYTIRITDRINFDQK 309
N+ +RITD ++ ++
Sbjct: 375 NFGVRITDIVSPAER 389
>gi|269961628|ref|ZP_06175990.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833669|gb|EEZ87766.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 136
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + + V I + + ++++++ L
Sbjct: 24 PSIDVDEILAAPLEELKDTSAPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|254251032|ref|ZP_04944350.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
gi|124893641|gb|EAY67521.1| flagellar motor switch protein [Burkholderia dolosa AUO158]
Length = 166
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 84 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 143
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 144 NDKFGIRLTDIITPAERIRK 163
>gi|148546748|ref|YP_001266850.1| flagellar motor switch protein [Pseudomonas putida F1]
gi|148510806|gb|ABQ77666.1| flagellar motor switch protein FliN [Pseudomonas putida F1]
Length = 154
Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ VNI + + +++++ L G VI + NG I E+ V +
Sbjct: 75 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 134
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 135 KFGIRLTDVISPSERIKK 152
>gi|170698079|ref|ZP_02889160.1| flagellar motor switch protein FliN [Burkholderia ambifaria
IOP40-10]
gi|170137040|gb|EDT05287.1| flagellar motor switch protein FliN [Burkholderia ambifaria
IOP40-10]
Length = 163
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 81 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 141 NDKFGIRLTDIITPAERIRK 160
>gi|312792660|ref|YP_004025583.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179800|gb|ADQ39970.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 375
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ E + + + + I + + +++++ G +I
Sbjct: 281 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 339
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RITD +N +
Sbjct: 340 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 375
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ + +G + ++ V+I+ K+ + F
Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSILKWEELPKEFPVPYVAIKVV 86
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
+ V + + ++G + E +L LS +++ + + S
Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145
Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
L+ ++ + +P + + + + + + MTI + + S + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
P + + L + + Q E +
Sbjct: 206 PVDFAKQLVDAMLKNTLGTPAQIEVSAQKQQEAAKE 241
>gi|296330847|ref|ZP_06873322.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674365|ref|YP_003866037.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296151852|gb|EFG92726.1| flagellar motor switch protein [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412609|gb|ADM37728.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 379
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 2/196 (1%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
+G + ++ VDI+ S S I +F E +
Sbjct: 39 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPKSKISDAFPEPYVAIEVNYTEGF 98
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
S + + N + + ++G + + ++ + + + ++ S
Sbjct: 99 SGSNLLVVEQNDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
+ SP + D+ K +E + ++ N+ + + SS + + P
Sbjct: 159 KKIDISPPRVELLDVTEKKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218
Query: 211 LISLSSQNKSENQSED 226
+++ N E +
Sbjct: 219 SSLMNTGNAEEETTPQ 234
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 40/103 (38%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + N++ + ++I + K ++K+++ L G +I
Sbjct: 273 PVQVSPVEFSAFDPNEASQAPIHNLDMLLDIPLSITVELGRTKRSVKEILELSAGSIIEL 332
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + + E+ + +N+ +R+TD ++ ++
Sbjct: 333 DKLAGEPVDILVNQRIVAKGEVVVIEENFGVRVTDILSQAERI 375
>gi|90577377|ref|ZP_01233188.1| putative flagellar motor switch protein [Vibrio angustum S14]
gi|90440463|gb|EAS65643.1| putative flagellar motor switch protein [Vibrio angustum S14]
Length = 257
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 44/287 (15%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDL--------DVDISYTSCQSGKFSHIIHSFKENFV 82
+ K + L D ++ +S TS ++
Sbjct: 6 LGKPIHIIKDELANILNNSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQ-----GQHAA 60
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
F+ CS L+I L + + + +++++T + +L +R
Sbjct: 61 FTVLHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSTKSQTITTSDLRLQERIGRLF 118
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
SA + D + N LS++ I +++T E ++ I
Sbjct: 119 SAQIAP-----------------EDMWQPCDNSLSDDIGLFIQLSVTCEETIGDIIICID 161
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ T + + +L F+++ V ++T + K+ L V+ LK G
Sbjct: 162 SALIQTLTSVIG------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPG 215
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ + + + + +++ + + IN +
Sbjct: 216 DIFDIDLLQSSPISI--GQEHLFNGHVAEQNGQLVL----IINTSKD 256
>gi|307824487|ref|ZP_07654712.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
SV96]
gi|307734471|gb|EFO05323.1| flagellar motor switch protein FliN [Methylobacter tundripaludum
SV96]
Length = 126
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I I + +++++ L G V+ + NG I E+ +
Sbjct: 47 ILDVPVTISMEIGRTQINIRNLLQLNQGSVVELERFAGEPLDVLVNGTLIAHGEVVVIND 106
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 107 KFGIRLTDVISPSERV 122
>gi|297584048|ref|YP_003699828.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
selenitireducens MLS10]
gi|297142505|gb|ADH99262.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
selenitireducens MLS10]
Length = 412
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 37/99 (37%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + + + + + + K ++K+++ L G ++
Sbjct: 310 QPAAFSSFETPSLNENEQRNLDLLMDIPLEVTVELGRTKRSIKEILELGQGSIVELDKLA 369
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + I E+ + +N+ +R+TD ++ ++
Sbjct: 370 GEPVDILVNQRLIAKGEVVVIDENFGVRVTDIVSQAERL 408
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 2/207 (0%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+G + ++ VDI+ + S + F + S
Sbjct: 51 SDIEIDALGEIGNISFGSSATALSTLLNQKVDITTPKVSVVRKSDLEKEFPKPHVAISVT 110
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + + + ++G P+ + ++ + + S +
Sbjct: 111 YTAGFEGLNLLVIKTKDASIIADLMMGNDGTNAPEEMGDMELSAVQEAMNQMMGSASTSM 170
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ + + SP D D+ + + I+ N+ I + + S + ++
Sbjct: 171 STIFNKKVDISPPGIDMMDLAENPDAIEIPGEDVLVQISFNLKIGDLIDSRIMQLLTVSF 230
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFA 232
++ + DP A
Sbjct: 231 AKDMVDQLMNPGGDDDVMDAVQEDPLA 257
>gi|58582232|ref|YP_201248.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84624125|ref|YP_451497.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188576792|ref|YP_001913721.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188576984|ref|YP_001913913.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426826|gb|AAW75863.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84368065|dbj|BAE69223.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188521244|gb|ACD59189.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521436|gb|ACD59381.1| flagellar protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 112
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 34/91 (37%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
++ D + V + + + +++++ L G V+ +
Sbjct: 18 QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NG I E+ V + IR+TD ++ ++
Sbjct: 78 NGTLIAHGEVVVVNDRFGIRLTDVVSPSERI 108
>gi|91223553|ref|ZP_01258818.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269965695|ref|ZP_06179808.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91191639|gb|EAS77903.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269829763|gb|EEZ83999.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 136
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + + + V I + + ++++++ L
Sbjct: 24 PSVDVDEVLAAPLEELKDTSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|260886645|ref|ZP_05897908.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
35185]
gi|260863788|gb|EEX78288.1| flagellar motor switch phosphatase FliY [Selenomonas sputigena ATCC
35185]
Length = 398
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K T+KD++ L G ++ + NGK + E+ + +
Sbjct: 319 ILDVPLQVTVELGRTKKTIKDILELTNGSIVELDKLAGEPVDIMVNGKFLAKGEVVVIDE 378
Query: 295 NYTIRITDRINFDQK 309
N+ +RITD ++ ++
Sbjct: 379 NFGVRITDIVSPAER 393
>gi|260772331|ref|ZP_05881247.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
69.14]
gi|260611470|gb|EEX36673.1| flagellar motor switch protein FliN [Vibrio metschnikovii CIP
69.14]
Length = 136
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + + V I + K ++++++ L
Sbjct: 24 PDVDVDEILAAPLDELKDTSPPITEDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|121997288|ref|YP_001002075.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
gi|121588693|gb|ABM61273.1| flagellar motor switch protein FliN [Halorhodospira halophila SL1]
Length = 174
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + I + +++ ++ L G V+ + NG I E+ V +
Sbjct: 95 ILDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE 154
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 155 RFGIRLTDVISPAERVKK 172
>gi|153834118|ref|ZP_01986785.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|156975422|ref|YP_001446329.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
gi|148869488|gb|EDL68486.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|156527016|gb|ABU72102.1| hypothetical protein VIBHAR_03153 [Vibrio harveyi ATCC BAA-1116]
Length = 136
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + D + V I + + ++++++ L
Sbjct: 24 PSIDVDEVLAAPLEELKDTSSPITDDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|163801853|ref|ZP_02195750.1| flagellar motor switch protein [Vibrio sp. AND4]
gi|159174361|gb|EDP59165.1| flagellar motor switch protein [Vibrio sp. AND4]
Length = 136
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + D + V I + + ++++++ L
Sbjct: 24 PSIDVDEVLAAPLEELKDTSSPITDDERRKLDSIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|172059106|ref|YP_001806758.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
gi|171991623|gb|ACB62542.1| flagellar motor switch protein FliN [Burkholderia ambifaria MC40-6]
Length = 163
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 81 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 141 NDKFGIRLTDIITPAERIRK 160
>gi|114320136|ref|YP_741819.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226530|gb|ABI56329.1| flagellar motor switch protein FliN [Alkalilimnicola ehrlichii
MLHE-1]
Length = 226
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + I + +++ ++ L G V+ + NG I E+ V +
Sbjct: 147 IMDIPVTLSMEIGRTQISIRHLLQLNQGSVVELDRLAGEPLDVMVNGTLIAHGEVVVVNE 206
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 207 RFGIRLTDVISAAERVKK 224
>gi|262393596|ref|YP_003285450.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
gi|262337190|gb|ACY50985.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
Length = 136
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + + + V I + + ++++++ L
Sbjct: 24 PSVDVDEVLAAPLEELKDTSSPITEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|21231366|ref|NP_637283.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768581|ref|YP_243343.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|188991609|ref|YP_001903619.1| Flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. campestris str. B100]
gi|21113029|gb|AAM41207.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573913|gb|AAY49323.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
gi|167733369|emb|CAP51570.1| Flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. campestris]
Length = 112
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 38/97 (39%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ ++ + +D D + V + + + +++++ L G V+
Sbjct: 12 ATFESLHAERDQDATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGE 71
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG I E+ + + IR+TD ++ ++
Sbjct: 72 PLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108
>gi|2315250|emb|CAA74716.1| flagellar switch protein [Rhodobacter sphaeroides]
gi|3435107|gb|AAC32320.1| flagellar protein FliN [Rhodobacter sphaeroides]
Length = 152
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 38/103 (36%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
L + + ++ L R + V + + + T++D++ L G V+
Sbjct: 46 LPPFPTGARMTDATRPLADRLGAENLRLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVE 105
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ NG I E+ VG+ + IR I +++
Sbjct: 106 LDRLAGDPLDVLVNGTPIAKGEVVMVGERFGIRFGQIIEPEKR 148
>gi|124265766|ref|YP_001019770.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
gi|124258541|gb|ABM93535.1| flagellar motor switch protein [Methylibium petroleiphilum PM1]
Length = 142
Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +K ++ L G V+ + NG I E+ V
Sbjct: 60 ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 119
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 120 KFGIRLTDIVTPSERM 135
>gi|311030118|ref|ZP_07708208.1| flagellar motor switch protein [Bacillus sp. m3-13]
Length = 410
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/313 (12%), Positives = 86/313 (27%), Gaps = 32/313 (10%)
Query: 14 HPILLAR-LTGKLGDKKT---IEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQ 66
++A + G G+ E S++ + + +DIS S
Sbjct: 114 DAAIIADLMLGGTGENPQNEFDEIHLSAVHEAMNQMMGSAATSMSTVFAKKIDISPPSVM 173
Query: 67 SGKF--SHIIHSFKENFVFSQASL-----SSWSSNFFIGCSNNLVITLLENLLGASHETI 119
F E+ + + + S+ L+E LL
Sbjct: 174 LIDFKAGDGTSEMPEDELLIKVAFSIKIGKLIDSSIMQILPYPFAKKLVEELL------- 226
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
E I + +Q ++ E + DY ++ R E
Sbjct: 227 -------HRDDETNQVSEVIQETEKPTSQANESSYEQRNQEQTASTADYYQREEERSVTE 279
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ T + + E+ +
Sbjct: 280 API--REHAYAGGHERPSNPA--PRTQQAVNVQPAVFSSFETTTVEESEPNNLNMLLDIP 335
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + K ++KD++ L G +I + N K I E+ + +++ +R
Sbjct: 336 LQVTVELGRTKRSVKDILELSTGSIIELDKLAGEPVDILVNNKLIAQGEVVVIDESFGVR 395
Query: 300 ITDRINFDQKSLK 312
+TD ++ + K
Sbjct: 396 VTDIVSQTDRIRK 408
Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/196 (11%), Positives = 62/196 (31%), Gaps = 2/196 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + ++ V I+ + S + F + +
Sbjct: 42 QDALGEIGNISFGSSATALSTLLNQKVQITTPKVTLVEKSRLESEFPDPYVAIRVSYTEG 101
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+S + + + + +LG + E ++ + + + + + ++
Sbjct: 102 FSGSNILVVEQKDAAIIADLMLGGTGENPQNEFDEIHLSAVHEAMNQMMGSAATSMSTVF 161
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKT 209
+ + SP D + +E + + ++ I + SS + I+P K
Sbjct: 162 AKKIDISPPSVMLIDFKAGDGTSEMPEDELLIKVAFSIKIGKLIDSSIMQILPYPFAKKL 221
Query: 210 TLISLSSQNKSENQSE 225
L +++ SE
Sbjct: 222 VEELLHRDDETNQVSE 237
>gi|152997439|ref|YP_001342274.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
gi|150838363|gb|ABR72339.1| flagellar motor switch protein FliN [Marinomonas sp. MWYL1]
Length = 153
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 189 TIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRIN 247
E + + + ++ + + S DL + V + +
Sbjct: 32 DSEGIEDEWAAAMSEQKVEPVKLETLTNPSVPSGGVGSDL-----DLIMDIPVVLSMELG 86
Query: 248 LKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ +++++ L G V+ + NG I E+ V Y IR+TD ++
Sbjct: 87 NTEIAIRNLMQLTQGSVVELDRFAGEPLDVLVNGTLIAHGEVVVVNDKYGIRLTDVVSPS 146
Query: 308 QKS 310
++
Sbjct: 147 ERI 149
>gi|49080528|gb|AAT50030.1| PA1444 [synthetic construct]
Length = 158
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + ++++++ L G VI + NG I E+ V +
Sbjct: 78 ILDIPVTISMEVGHTDISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVAVNE 137
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 138 KFGIRLTDVISPSERIKK 155
>gi|260767698|ref|ZP_05876633.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260617207|gb|EEX42391.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315179470|gb|ADT86384.1| flagellar motor switch protein [Vibrio furnissii NCTC 11218]
Length = 136
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + D + V I + K ++++++ L
Sbjct: 24 PDIDVDEVLAAPLDELKDTTSPISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|53717667|ref|YP_106653.1| flagellar motor switch protein [Burkholderia pseudomallei K96243]
gi|126440526|ref|YP_001057085.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
gi|126454703|ref|YP_001064315.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106a]
gi|134281531|ref|ZP_01768239.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
gi|167892139|ref|ZP_02479541.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
7894]
gi|217423854|ref|ZP_03455354.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
gi|237814423|ref|YP_002898874.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
MSHR346]
gi|242314847|ref|ZP_04813863.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106b]
gi|254174650|ref|ZP_04881311.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
10399]
gi|254184093|ref|ZP_04890684.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1655]
gi|254186559|ref|ZP_04893076.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pasteur 52237]
gi|254201358|ref|ZP_04907722.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
gi|254206700|ref|ZP_04913051.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
gi|254260996|ref|ZP_04952050.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710a]
gi|254298639|ref|ZP_04966090.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
406e]
gi|254357363|ref|ZP_04973637.1| flagellar motor switch protein FliN [Burkholderia mallei
2002721280]
gi|52208081|emb|CAH34011.1| probable flagellar motor switch protein [Burkholderia pseudomallei
K96243]
gi|126220019|gb|ABN83525.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 668]
gi|126228345|gb|ABN91885.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106a]
gi|134247198|gb|EBA47284.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 305]
gi|147747252|gb|EDK54328.1| flagellar motor switch protein FliN [Burkholderia mallei FMH]
gi|147752242|gb|EDK59308.1| flagellar motor switch protein FliN [Burkholderia mallei JHU]
gi|148026427|gb|EDK84512.1| flagellar motor switch protein FliN [Burkholderia mallei
2002721280]
gi|157808697|gb|EDO85867.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
406e]
gi|157934244|gb|EDO89914.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
Pasteur 52237]
gi|160695695|gb|EDP85665.1| flagellar motor switch protein FliN [Burkholderia mallei ATCC
10399]
gi|184214625|gb|EDU11668.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1655]
gi|217392917|gb|EEC32939.1| flagellar motor switch protein FliN [Burkholderia pseudomallei 576]
gi|237504588|gb|ACQ96906.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
MSHR346]
gi|242138086|gb|EES24488.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1106b]
gi|254219685|gb|EET09069.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710a]
Length = 165
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 83 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 142
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 143 NDKFGIRLTDIITPSERIRK 162
>gi|312126832|ref|YP_003991706.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor hydrothermalis 108]
gi|311776851|gb|ADQ06337.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor hydrothermalis 108]
Length = 376
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ E + + + + I + + +++++ G +I
Sbjct: 282 QFESFDEEEERRYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 340
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RITD +N +
Sbjct: 341 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 7/216 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ + +G + ++ V+I+ K+ + F
Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPIVSVLKWEELPKEFPVPYVAIKVV 86
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
+ V + + ++G + E +L LS +++ + + S
Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEELTELQLSAIQEA-MNQMVGSAST 145
Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
L+ ++ + +P + + + + + + MTI + + S + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKVAFRMTIGDLIDSQIMQLI 205
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
P + + L + + Q E +
Sbjct: 206 PVDFAKQLVDAMLKNALGTPAQIETSAQSQQESVKE 241
>gi|167834867|ref|ZP_02461750.1| flagellar motor switch protein FliN [Burkholderia thailandensis
MSMB43]
Length = 130
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 48 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 107
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 108 NDKFGIRLTDIITPSERIRK 127
>gi|160880834|ref|YP_001559802.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium phytofermentans ISDg]
gi|160429500|gb|ABX43063.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium phytofermentans ISDg]
Length = 401
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/287 (9%), Positives = 77/287 (26%), Gaps = 34/287 (11%)
Query: 35 SSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
S++ + + ++ VDI+ +I
Sbjct: 133 LSAISEAMNQMMGSASTSLSSMLEKKVDITPPVASIVDIPEVID---------------- 176
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC-- 149
+ + V + ++ + ++L ++ + N
Sbjct: 177 GGDIAEFLKSRFV-KVSFRMVIGDLVDSELMQLYPF-DFARELYEQFMKYTETETNAADG 234
Query: 150 -ISTTQESSPNLEDFYDIDYLKKNTNRLSN----------EFVTTINMNMTIENVASSFV 198
+E + + + + N + M++ + +
Sbjct: 235 YSKPKKEKTVTPDPVETSNNNSFTQDIGKNMNMQTPQMQPQMAQMQGMSLQGMAMPGMSM 294
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+PQ + + Q S L + + + + ++++++
Sbjct: 295 QQVPQGMVQNVNIAPAQFQPFVNTGSPLLQTENIDLLLDVPLEVTVELGRTSKSIREILD 354
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
G ++ + NGK + E+ + + + IR+TD I
Sbjct: 355 FAPGTIVELNRLAGEPIDVLVNGKYVAKGEVVVIEEAFGIRVTDIIK 401
Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/244 (10%), Positives = 68/244 (27%), Gaps = 12/244 (4%)
Query: 1 MRGQSIHKNTSPLHPILLARLTGKLGDKKTI----EKISSSLGYLYKKFLPKIFKEKMDL 56
M G + + L + D +++ + + ++
Sbjct: 1 MDGMLSQEEINALLNGMGTENVETAADLESLTDSEIDALGEMSNISMGTAATTLSSLVNQ 60
Query: 57 DVDISYTSCQSGKFSHIIHSFKENFVFS-QASLSSWSSNFFIGCSNNLVITLLENLLGAS 115
V I+ ++ ++ ++ VF N + V + + ++G
Sbjct: 61 KVTITTPKVCYAEWEDLLSAYDRPCVFIQIYYKDGLDGNNILVLKEKDVKIITDLMMGGD 120
Query: 116 HETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNR 175
+ + + + S L+ + + +P +D +
Sbjct: 121 GLNSEGDLTELHLSAISEAMNQMMGSASTSLSSMLEKKVDITP--PVASIVDIPEVIDGG 178
Query: 176 LSNEFV----TTINMNMTIEN-VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230
EF+ ++ M I + V S + + P + + + N ++ P
Sbjct: 179 DIAEFLKSRFVKVSFRMVIGDLVDSELMQLYPFDFARELYEQFMKYTETETNAADGYSKP 238
Query: 231 FARK 234
K
Sbjct: 239 KKEK 242
>gi|76810554|ref|YP_331657.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710b]
gi|76580007|gb|ABA49482.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
1710b]
Length = 143
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 61 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 121 NDKFGIRLTDIITPSERIRK 140
>gi|188592198|ref|YP_001796796.1| flim: flagellar motor switching and energizing component.
flin/mopa/spao family. [Cupriavidus taiwanensis LMG
19424]
gi|170938572|emb|CAP63559.1| FliM: flagellar motor switching and energizing component.
fliN/mopA/spaO family [Cupriavidus taiwanensis LMG
19424]
Length = 148
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 66 EMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 125
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 126 NDKFGIRLTDIITPSERIRK 145
>gi|121608106|ref|YP_995913.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
EF01-2]
gi|121552746|gb|ABM56895.1| flagellar motor switch protein FliN [Verminephrobacter eiseniae
EF01-2]
Length = 163
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 80 NRVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 139
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 140 NDKFGIRLTDVVTPSERL 157
>gi|88813209|ref|ZP_01128449.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
gi|88789531|gb|EAR20658.1| flagellar motor switch protein [Nitrococcus mobilis Nb-231]
Length = 138
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +++++ L G V+ + NG + E+ V +
Sbjct: 59 ILDVPVTLSMELGRTQIDIRNLLQLNQGSVVELDRLAGEPLDVMVNGTLVAHGEVVVVNE 118
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD ++ ++ K
Sbjct: 119 RFGIRLTDVVSQGERVRK 136
>gi|254458945|ref|ZP_05072368.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
gi|207084216|gb|EDZ61505.1| flagellar motor switch FliN [Campylobacterales bacterium GD 1]
Length = 288
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 22/236 (9%)
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTT 153
+ + NL +L + ++G + + +K I+ I ++ +S
Sbjct: 58 TAMVALTPNLAASLSDMMMGEDASDRDDVS-----DDDLDASKEIISNIFGAISNSLSAQ 112
Query: 154 QESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ---------- 203
+E I+++ ++++ ++ I ++ S F+ I+ +
Sbjct: 113 KEIPVLSFKIDSIEFVGEDSDVSLEDYSKMYVYKFMIGDLTSLFMFILDENLNNSLEGNT 172
Query: 204 -----ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+++ + S + S + ++ + + + + RI KK LKDV+
Sbjct: 173 KDNSHDSMSPSMSSVSSDYTSNVKLSGEEMNNIS-LIMDVKLPVRVRIGKKKMLLKDVLN 231
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ IG VI + + I E+ V N+ ++IT I ++ L
Sbjct: 232 MDIGSVIELNQLANDPLDILVDNHVIAQGEVVIVDGNFGVQITS-IGSKRERLTQL 286
>gi|152980125|ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein
[Janthinobacterium sp. Marseille]
gi|151280202|gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein
[Janthinobacterium sp. Marseille]
Length = 139
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 59 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 118
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 119 KFGIRLTDIITPAERIRK 136
>gi|254497500|ref|ZP_05110293.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
gi|254353315|gb|EET12057.1| flagellar motor switch protein FliN [Legionella drancourtii LLAP12]
Length = 106
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 38/94 (40%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q K ++ + V++ I K T+++++ L G ++P
Sbjct: 9 QPKQTTLPQEADSEKMDLILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVPLDRLAGDPLD 68
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + E+ V + +R+TD ++ ++
Sbjct: 69 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 102
>gi|86146128|ref|ZP_01064454.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|148976421|ref|ZP_01813127.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|218708831|ref|YP_002416452.1| flagellar motor switch protein [Vibrio splendidus LGP32]
gi|85836075|gb|EAQ54207.1| flagellar motor switch protein [Vibrio sp. MED222]
gi|145964244|gb|EDK29500.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|218321850|emb|CAV17825.1| Flagellar motor switch protein fliN [Vibrio splendidus LGP32]
Length = 136
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + L S + + + V I + + ++++++ L
Sbjct: 24 PSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|238796939|ref|ZP_04640443.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
gi|238719199|gb|EEQ11011.1| Flagellar motor switch protein fliN [Yersinia mollaretii ATCC
43969]
Length = 129
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 47 DLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 106
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IRITD I ++ +
Sbjct: 107 SDKFGIRITDIITPSERMYR 126
>gi|308048760|ref|YP_003912326.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
gi|307630950|gb|ADN75252.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
Length = 129
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 38/110 (34%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
L + Q + + + V I + + ++++++ L G
Sbjct: 18 AAALEEQAETVELEQFDAPMGGDSEQQRKLDAILDIPVTISMEVGRSQISIRNLLQLNQG 77
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
V+ + NG + E+ V + IR+TD I+ ++ K
Sbjct: 78 SVVELDRVAGEPLDVMVNGTLVAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|289666108|ref|ZP_06487689.1| flagellar protein [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289670557|ref|ZP_06491632.1| flagellar protein [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 112
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 37/97 (38%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ ++ ++ D + V + + + +++++ L G V+
Sbjct: 12 ATFESLQAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGE 71
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG I E+ + + IR+TD ++ ++
Sbjct: 72 PLDVYVNGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108
>gi|238782829|ref|ZP_04626858.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
43970]
gi|238716252|gb|EEQ08235.1| Flagellar motor switch protein fliN [Yersinia bercovieri ATCC
43970]
Length = 129
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 47 DLILDIPVKMTVELGRTKMTIKELLRLSQGSVVSLEGLAGEPLDILINGYLIAQGEVVVV 106
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IRITD I ++ +
Sbjct: 107 SDKFGIRITDIITPSERMYR 126
>gi|90411031|ref|ZP_01219045.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
gi|90328244|gb|EAS44555.1| flagellar motor switch protein [Photobacterium profundum 3TCK]
Length = 129
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
++S S+D + V I + + ++++++ L G V+
Sbjct: 29 LEELVDESTPISDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|325917743|ref|ZP_08179930.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
35937]
gi|325536042|gb|EGD07851.1| flagellar motor switch protein FliN [Xanthomonas vesicatoria ATCC
35937]
Length = 112
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 34/91 (37%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
++ D + V + + + +++++ L G V+ +
Sbjct: 18 QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NG I E+ + + IR+TD ++ ++
Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108
>gi|325474548|gb|EGC77734.1| flagellar switch protein FliY [Treponema denticola F0402]
Length = 393
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K +K+++ + G +I + N K I E+ + +
Sbjct: 315 IMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEE 374
Query: 295 NYTIRITDRINFDQKSLK 312
++ +RIT+ ++ ++
Sbjct: 375 SFGVRITEILSPAERISD 392
>gi|289208345|ref|YP_003460411.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
gi|288943976|gb|ADC71675.1| flagellar motor switch protein FliN [Thioalkalivibrio sp. K90mix]
Length = 203
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P L++ + +L + + V I I + +++++ L
Sbjct: 96 PDPEAEPLKPEELAASAGMSAEDINL-----QMVLDVPVTISMEIGRSRIPIRNLLQLNQ 150
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + + IR+TD I+ ++ K
Sbjct: 151 GSVVELDRLAGEALDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIRK 201
>gi|119476309|ref|ZP_01616660.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2143]
gi|119450173|gb|EAW31408.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2143]
Length = 152
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 35/78 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + + ++++++ L G VI + NG I E+ V +
Sbjct: 73 IMDIPVSISMEVGNTEISIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRMTDVISPSERIKK 150
>gi|42528262|ref|NP_973360.1| flagellar motor switch protein FliY [Treponema denticola ATCC
35405]
gi|4426949|gb|AAD20623.1| flagellar switch protein FliY [Treponema denticola]
gi|41819532|gb|AAS13279.1| flagellar motor switch protein FliY [Treponema denticola ATCC
35405]
Length = 393
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K +K+++ + G +I + N K I E+ + +
Sbjct: 315 IMDVYMEMTVELGRTKRMIKEILGMGEGHIIELDKLAGEPVDVLVNHKPIAKGEVVVIEE 374
Query: 295 NYTIRITDRINFDQKSLK 312
++ +RIT+ ++ ++
Sbjct: 375 SFGVRITEILSPAERISD 392
>gi|78047546|ref|YP_363721.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|294664067|ref|ZP_06729469.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|325928697|ref|ZP_08189869.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
gi|78035976|emb|CAJ23667.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|292606170|gb|EFF49419.1| flagellar motor switch/type III secretory pathway protein FliN
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|325540929|gb|EGD12499.1| flagellar motor switch protein FliN [Xanthomonas perforans 91-118]
Length = 112
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 35/91 (38%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
Q ++ D + V + + + +++++ L G V+ +
Sbjct: 18 QAEQDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NG I E+ + + IR+TD ++ ++
Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108
>gi|90579935|ref|ZP_01235743.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90438820|gb|EAS64003.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 129
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + ++D + V I + + ++++++ L G V+
Sbjct: 29 LEELTDDTVAITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|89899369|ref|YP_521840.1| flagellar motor switch FliN [Rhodoferax ferrireducens T118]
gi|89344106|gb|ABD68309.1| Flagellar motor switch FliN [Rhodoferax ferrireducens T118]
Length = 139
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 55 NRVLDIPVQLSVELGRTKVPIKHILQLGQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 114
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 115 NDKFGIRLTDVVTPSERL 132
>gi|166712024|ref|ZP_02243231.1| flagellar protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 112
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 34/91 (37%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
++ D + V + + + +++++ L G V+ +
Sbjct: 18 QAEHDQNAADLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NG I E+ + + IR+TD ++ ++
Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108
>gi|209522294|ref|ZP_03270921.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
gi|209497270|gb|EDZ97498.1| flagellar motor switch protein FliN [Burkholderia sp. H160]
Length = 153
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 71 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 130
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 131 NDKFGIRLTDIITPSERIRK 150
>gi|302037616|ref|YP_003797938.1| flagellar motor switch protein FliN [Candidatus Nitrospira
defluvii]
gi|300605680|emb|CBK42013.1| Flagellar motor switch protein FliN [Candidatus Nitrospira
defluvii]
Length = 124
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 34/76 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + +I + +++++ L G VI + N K + E+ V +
Sbjct: 45 VLDIPLQVTVQIGSTRMLIRELLQLGQGSVIELNKLAGEPMEVLVNNKLVARGEVVVVNE 104
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD ++ +Q+
Sbjct: 105 KFGIRLTDVVSPNQRI 120
>gi|297569683|ref|YP_003691027.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
AHT2]
gi|296925598|gb|ADH86408.1| flagellar motor switch protein FliN [Desulfurivibrio alkaliphilus
AHT2]
Length = 134
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 30/103 (29%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + + + + + + ++ L G VI
Sbjct: 28 PDFDELSADAGSPAPSTASTGSQNLDFLLDVPLEVSVELGRTSMIINKMLQLTQGSVIEL 87
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K + E+ V + + IR+T+ I+ +
Sbjct: 88 DKAAGEPVEIFVNQKLMGKGEVVVVNERFGIRVTEIISQADRI 130
>gi|23099023|ref|NP_692489.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
gi|22777251|dbj|BAC13524.1| flagellar motor switch protein [Oceanobacillus iheyensis HTE831]
Length = 389
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + K ++ D++ L G +I + N K + E+ +
Sbjct: 307 DMLLDVPLKVTVELGRTKQSISDILDLSAGSIIELDKLAGEPVDILVNEKLVAEGEVVVI 366
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +R+TD I+ +
Sbjct: 367 EENFGVRVTDIISQTDRI 384
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/198 (11%), Positives = 58/198 (29%), Gaps = 4/198 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK-ENFVFSQA 86
+G + ++ V+I+ S + + + I + E
Sbjct: 36 SSIEIDALGEIGNISFGSSATTLSTLLNQKVEITTPSVEVIEKADIDNEVTFEPVSVQVN 95
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ +S + + +LG T + N + ++ + + + +
Sbjct: 96 YIDGFSGKNVFVIKARDAAIIADIMLGGDGTTPDETLNDIHLSAVQETMNQMMGAAATSM 155
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ + SP D NT + + +T+ N + S+ + +IP
Sbjct: 156 STVFDMKVDISPPEIINGIEDN--ANTVVFDEDVYVKVFFRLTVGNLIDSNMMQLIPLSF 213
Query: 206 LLKTTLISLSSQNKSENQ 223
+ L + +
Sbjct: 214 ARQLVDQLLHAPTEEAAV 231
>gi|84388119|ref|ZP_00991015.1| flagellar motor switch protein [Vibrio splendidus 12B01]
gi|84377186|gb|EAP94056.1| flagellar motor switch protein [Vibrio splendidus 12B01]
Length = 136
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + L S + + + V I + + ++++++ L
Sbjct: 24 PSIDVDDVLAAPLDELTDSSSPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|126665007|ref|ZP_01735990.1| flagellar motor switch protein [Marinobacter sp. ELB17]
gi|126630377|gb|EBA00992.1| flagellar motor switch protein [Marinobacter sp. ELB17]
Length = 172
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + +++++ L G VI + NG I E+ V
Sbjct: 92 IMDIPVTISMEVGNTMIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND 151
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD ++ ++
Sbjct: 152 KFGIRLTDVMSPGERI 167
>gi|253996307|ref|YP_003048371.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
gi|253982986|gb|ACT47844.1| flagellar motor switch protein FliN [Methylotenera mobilis JLW8]
Length = 157
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 77 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 136
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 137 KFGIRLTDIITPAERIRK 154
>gi|78064700|ref|YP_367469.1| Type III secretion system outer membrane O protein [Burkholderia
sp. 383]
gi|77965445|gb|ABB06825.1| Type III secretion system outer membrane O protein [Burkholderia
sp. 383]
Length = 163
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 81 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 140
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 141 NDKFGIRLTDIITPAERIRK 160
>gi|330445374|ref|ZP_08309026.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489565|dbj|GAA03523.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 129
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
++S ++D + V I + + ++++++ L G V+
Sbjct: 29 LEELTDESTPITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|297538202|ref|YP_003673971.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
gi|297257549|gb|ADI29394.1| flagellar motor switch protein FliN [Methylotenera sp. 301]
Length = 157
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 77 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 136
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 137 KFGIRLTDIITPAERIRK 154
>gi|115350087|ref|YP_771926.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
gi|115280075|gb|ABI85592.1| flagellar motor switch protein FliN [Burkholderia ambifaria AMMD]
Length = 161
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 79 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 138
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 139 NDKFGIRLTDIITPAERIRK 158
>gi|54294678|ref|YP_127093.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Lens]
gi|53754510|emb|CAH15994.1| Flagellar motor switch protein FliN [Legionella pneumophila str.
Lens]
Length = 109
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q N + V++ I K T+++++ L G ++
Sbjct: 14 QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + E+ V + +R+TD ++ ++
Sbjct: 72 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105
>gi|297544697|ref|YP_003676999.1| MCP methylation inhibitor CheC / FliN fusion protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842472|gb|ADH60988.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 381
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 37/93 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
++ + + + I + K +KD++ L G +I +
Sbjct: 285 DEEPSIEGKEEKENLELILDVPLTITVELGRTKKLIKDILELSEGSIIELDKLAGEPVDI 344
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
ANGK I E+ + +N+ +RI D ++ ++
Sbjct: 345 LANGKYIAKGEVVVIDENFGVRIIDIVHQSKRI 377
>gi|237799246|ref|ZP_04587707.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022101|gb|EGI02158.1| flagellar motor switch protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 153
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 74 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 134 KFGIRLTDVISPSERIKK 151
>gi|90021819|ref|YP_527646.1| surface presentation of antigens (SpoA) protein [Saccharophagus
degradans 2-40]
gi|89951419|gb|ABD81434.1| Flagellar motor switch FliN [Saccharophagus degradans 2-40]
Length = 135
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + T+++++ L G VI + NG I E+ V +
Sbjct: 56 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 115
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 116 KFGIRMTDVISPSERIKK 133
>gi|26991046|ref|NP_746471.1| flagellar motor switch protein [Pseudomonas putida KT2440]
gi|24986078|gb|AAN69935.1|AE016632_6 flagellar motor switch protein FliN [Pseudomonas putida KT2440]
Length = 161
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ VNI + + +++++ L G VI + NG I E+ V +
Sbjct: 82 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 141
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 142 KFGIRLTDVISPSERIKK 159
>gi|150019114|ref|YP_001311368.1| flagellar motor switch protein [Clostridium beijerinckii NCIMB
8052]
gi|149905579|gb|ABR36412.1| CheC, inhibitor of MCP methylation [Clostridium beijerinckii NCIMB
8052]
Length = 398
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + K +++D++ L G +I + + NGK+I E+ V
Sbjct: 317 DLILDVPLDISVVLGRTKKSIQDILNLGTGSLIELDKLAEEPVEILVNGKQIALGEVVVV 376
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ IRIT+ ++ ++
Sbjct: 377 DENFGIRITNIVSSVERI 394
>gi|226941270|ref|YP_002796344.1| FliN [Laribacter hongkongensis HLHK9]
gi|226716197|gb|ACO75335.1| FliN [Laribacter hongkongensis HLHK9]
Length = 141
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VN+ + K +++++ L G V+ + NG I E+ V
Sbjct: 59 DMILDIPVNMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 118
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD I ++
Sbjct: 119 NDKFGIRLTDIITPAERL 136
>gi|89094447|ref|ZP_01167387.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
sp. MED92]
gi|89081339|gb|EAR60571.1| Surface presentation of antigens (SPOA) protein [Oceanospirillum
sp. MED92]
Length = 144
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +++ L G VI + NG I E+ V
Sbjct: 65 ILDIPVTLSMEVGQTDIPISNLLQLNQGSVIELDRVAGEPLDVMVNGTLIAHGEVVVVND 124
Query: 295 NYTIRITDRINFDQKS 310
Y IR+TD I+ ++
Sbjct: 125 RYGIRLTDVISPQERI 140
>gi|330961231|gb|EGH61491.1| flagellar motor switch protein [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 153
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 74 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 134 KFGIRLTDVISPSERIKK 151
>gi|302338091|ref|YP_003803297.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
11293]
gi|301635276|gb|ADK80703.1| flagellar motor switch protein FliN [Spirochaeta smaragdinae DSM
11293]
Length = 375
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K +KD++ + G +I + N K I E+ + +
Sbjct: 296 LMDVYMEMTVELGRTKRLIKDILGMGEGTIIELDKLAGEPVDILVNHKLIAKGEVVVIDE 355
Query: 295 NYTIRITDRINFDQKS 310
N+ +R+T+ ++ +
Sbjct: 356 NFGVRVTEIVSPMDRV 371
>gi|170737014|ref|YP_001778274.1| surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia MC0-3]
gi|169819202|gb|ACA93784.1| surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia MC0-3]
Length = 290
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/298 (13%), Positives = 82/298 (27%), Gaps = 41/298 (13%)
Query: 13 LHPILLARLTGKLGDKKTIE--KISSSLGYLYKKFLPKIFKEKMDLDV-DISYTSCQSGK 69
L P L R L D +I SL + + V +IS + +S
Sbjct: 31 LDPCTLGRPYHLLEDVLQDIKRRIDHSLHERF------NLRRGTSFVVTEISVAAMRSR- 83
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLST 129
V+ + + C L++ LL G S + +
Sbjct: 84 ---------NAAVWRTYAC--TRGQISVRCDRELLLALLACHYGTSLDEAVPTAPAPETG 132
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E++ + + + + L D + + V + ++
Sbjct: 133 AERRFSAQQHTALLTAFASAM---------LGDQAEPFSPNGDMLPGPGVRVLRMTISDR 183
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ V + + L L +Q+ + + V I + K
Sbjct: 184 LRKVGGDVEFALD-DMWLDHLFARLDAQHLRPAPDSAQANV------SIPVTISVHVLSK 236
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
L +++ ++ G V+P + N +Y L + IT +
Sbjct: 237 NMRLDELLRMRPGDVLPVRLP--ETVDVLVNNVRLYRAALAEHQG--ALWITSFEPVE 290
>gi|107021593|ref|YP_619920.1| flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
gi|116688063|ref|YP_833686.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
HI2424]
gi|170731413|ref|YP_001763360.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
gi|105891782|gb|ABF74947.1| Flagellar motor switch FliN [Burkholderia cenocepacia AU 1054]
gi|116646152|gb|ABK06793.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
HI2424]
gi|169814655|gb|ACA89238.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
Length = 162
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 80 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 139
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 140 NDKFGIRLTDIITPAERIRK 159
>gi|83721171|ref|YP_440588.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|83654996|gb|ABC39059.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
Length = 143
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 61 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 121 NDKFGIRLTDIITPSERIRK 140
>gi|77457774|ref|YP_347279.1| flagellar motor switch protein [Pseudomonas fluorescens Pf0-1]
gi|77381777|gb|ABA73290.1| putative flagellar motor switch protein [Pseudomonas fluorescens
Pf0-1]
Length = 152
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 1/147 (0%)
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225
D ++ L++E+ + +L T L + +N
Sbjct: 4 DMNTQDDQALADEWAAALEETGEAGQADIDALLAADAGTSSSNRLPMEEFGSVPKNNDPV 63
Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
L P + V+I + +++++ L G VI + NG I
Sbjct: 64 TLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 123
Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
E+ V + + IR+TD I+ ++ K
Sbjct: 124 HGEVVVVNEKFGIRLTDVISPSERIKK 150
>gi|134294172|ref|YP_001117907.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
gi|134137329|gb|ABO53072.1| flagellar motor switch protein FliN [Burkholderia vietnamiensis G4]
Length = 169
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG + E+ V
Sbjct: 87 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLLAQGEVVVV 146
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 147 NDKFGIRLTDIITPAERIRK 166
>gi|5921671|gb|AAD56295.1| FliN [Pseudomonas putida]
gi|313497807|gb|ADR59173.1| FliN [Pseudomonas putida BIRD-1]
Length = 160
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ VNI + + +++++ L G VI + NG I E+ V +
Sbjct: 81 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 140
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 141 KFGIRLTDVISPSERIKK 158
>gi|312135841|ref|YP_004003179.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor owensensis OL]
gi|311775892|gb|ADQ05379.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Caldicellulosiruptor owensensis OL]
Length = 376
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ E + + + + I + + +++++ G +I
Sbjct: 282 QFESFDEEEERKYPENI-ELILDVPLEITVELGRTQKLVREILEFSTGSIIELEKLAGEP 340
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +N+ +RITD +N +
Sbjct: 341 VDILVNGKVIAKGEVVVIDENFGVRITDIVNPSNRL 376
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/201 (11%), Positives = 63/201 (31%), Gaps = 7/201 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQA 86
+ + +G + ++ V+I+ K+ + F
Sbjct: 27 SDQDKDVLGEIGNISMGTAATTLSILLNQKVNITTPVVSVLKWDELPKEFPVPYVAIKVV 86
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISA 144
+ V + + ++G + E QL LS +++ + + S
Sbjct: 87 YKEGLDGVNLLILKKEDVEIIADLMMGGTGQIEFTEQLTELQLSAIQEA-MNQMVGSAST 145
Query: 145 VLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLII 201
L+ ++ + +P + + + + + I MTI + + S + +I
Sbjct: 146 SLSSMLNLKIDINPPEAFVIDFAQNAEEMIPELKRADEIVKIAFRMTIGDLIDSQIMQLI 205
Query: 202 PQETLLKTTLISLSSQNKSEN 222
P + + L + + +
Sbjct: 206 PVDFAKQLVDAMLRNTLGTSD 226
>gi|296135699|ref|YP_003642941.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
gi|295795821|gb|ADG30611.1| flagellar motor switch protein FliN [Thiomonas intermedia K12]
Length = 144
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 31/77 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 63 DLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVVLV 122
Query: 293 GKNYTIRITDRINFDQK 309
+ IR+TD ++ ++
Sbjct: 123 NDKFGIRLTDIVSPTER 139
>gi|167579275|ref|ZP_02372149.1| flagellar motor switch protein FliN [Burkholderia thailandensis
TXDOH]
gi|167617381|ref|ZP_02386012.1| flagellar motor switch protein FliN [Burkholderia thailandensis
Bt4]
Length = 165
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 83 DMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 142
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 143 NDKFGIRLTDIITPSERIRK 162
>gi|254491664|ref|ZP_05104843.1| flagellar motor switch protein FliN [Methylophaga thiooxidans
DMS010]
gi|224463142|gb|EEF79412.1| flagellar motor switch protein FliN [Methylophaga thiooxydans
DMS010]
Length = 155
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I I + ++++++ L G V+ + N I E+ V
Sbjct: 74 DMVMDIPVTISMEIGRTRISIRNLLQLSQGSVVELDRLAGEPMDVLVNDTLIAHGEVVVV 133
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 134 NDKFGIRLTDVISASERIKK 153
>gi|91776322|ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT]
gi|91710309|gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT]
Length = 142
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 62 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 121
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 122 KFGIRLTDIITPAERIRK 139
>gi|312879600|ref|ZP_07739400.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
12260]
gi|310782891|gb|EFQ23289.1| flagellar motor switch protein FliN [Aminomonas paucivorans DSM
12260]
Length = 374
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + + T+ +V+ + G V+ + NGK + E+ +
Sbjct: 292 DLIVDIPVRITVELGRARKTIGEVLGMGPGSVVELNRMAGEPVDVLVNGKLMARGEVVVI 351
Query: 293 GKNYTIRITDRINFDQKS 310
+++ IR+T+ ++ ++
Sbjct: 352 DESFGIRVTEIVSRAERI 369
>gi|52842018|ref|YP_095817.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|296107382|ref|YP_003619082.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
2300/99 Alcoy]
gi|52629129|gb|AAU27870.1| flagellar motor switch protein FliN [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|295649283|gb|ADG25130.1| flagellar motor switch protein FliN/FliY [Legionella pneumophila
2300/99 Alcoy]
gi|307610491|emb|CBX00063.1| flagellar motor switch protein FliN [Legionella pneumophila 130b]
Length = 109
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q N + V++ I K T+++++ L G ++
Sbjct: 14 QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + E+ V + +R+TD ++ ++
Sbjct: 72 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105
>gi|171316889|ref|ZP_02906098.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
gi|171097970|gb|EDT42788.1| flagellar motor switch protein FliN [Burkholderia ambifaria MEX-5]
Length = 172
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 90 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 149
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 150 NDKFGIRLTDIITPAERIRK 169
>gi|257095346|ref|YP_003168987.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047870|gb|ACV37058.1| flagellar motor switch protein FliN [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 145
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 31/77 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 63 DMILDIPVQLAVELGRTRITIKNLLQLAHGSVVELDAMAGEPLNVFVNGTLIAQGEVVVV 122
Query: 293 GKNYTIRITDRINFDQK 309
+ IR+TD + ++
Sbjct: 123 NDKFGIRLTDIVTPAER 139
>gi|294339870|emb|CAZ88233.1| Flagellar motor switch protein fliN [Thiomonas sp. 3As]
Length = 144
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 31/77 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 63 DLVMDIPVTLSVELGRTKIQIRELLQLAQGSVVDLDRLAGEPMDVLVNGFLIARGEVVLV 122
Query: 293 GKNYTIRITDRINFDQK 309
+ IR+TD ++ ++
Sbjct: 123 NDKFGIRLTDIVSPTER 139
>gi|152990357|ref|YP_001356079.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
gi|151422218|dbj|BAF69722.1| flagellar motor switch protein FliN [Nitratiruptor sp. SB155-2]
Length = 133
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVT 258
Q L L++ +S + D + + +++ I + L++V+
Sbjct: 17 QPELSPDELMAQQFAQESYGSETEEEDRIEKSKFSILLDVPLDVIVEIGSTQMPLEEVLK 76
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L V+ L NGK I EL V N+ ++IT + +++
Sbjct: 77 LNPNSVVELNRFIHEPVDLKVNGKVIAKGELYTVKNNFGLKITHVVTPEERL 128
>gi|148359335|ref|YP_001250542.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Corby]
gi|148281108|gb|ABQ55196.1| flagellar motor switch protein FliN [Legionella pneumophila str.
Corby]
Length = 109
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q N + V++ I K T+++++ L G ++
Sbjct: 14 QGNPLNPDPGNEKL--ELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLD 71
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG + E+ V + +R+TD ++ ++
Sbjct: 72 VLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERI 105
>gi|330808226|ref|YP_004352688.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376334|gb|AEA67684.1| Flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 152
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|326796457|ref|YP_004314277.1| flagellar motor switch protein FliN [Marinomonas mediterranea
MMB-1]
gi|326547221|gb|ADZ92441.1| flagellar motor switch protein FliN [Marinomonas mediterranea
MMB-1]
Length = 150
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VN+ + +++++ L G V+ + NG I E+ V
Sbjct: 69 DLIMDIPVNLSMELGGTDIAIRNLLQLTQGSVVELDRYAGEPLDVLVNGTLIAHGEVVVV 128
Query: 293 GKNYTIRITDRINFDQKS 310
Y IR+TD ++ ++
Sbjct: 129 NDKYGIRLTDVVSPSERI 146
>gi|114332023|ref|YP_748245.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
gi|114309037|gb|ABI60280.1| flagellar motor switch protein FliN [Nitrosomonas eutropha C91]
Length = 157
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
IP E L K + + + + V + + + +K+++ L
Sbjct: 46 IPDEDLTKPSSVFEQFSRNNVLNDTRNDIDM---ILDIPVQLTVELGRTRIAIKNLLQLA 102
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G VI + NG I E+ V + + IR+TD I ++ K
Sbjct: 103 QGSVIELDGMAGEPMDVLVNGCLIAQGEVVVVNEKFGIRLTDIITPSERIRK 154
>gi|254194758|ref|ZP_04901189.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
gi|169651508|gb|EDS84201.1| flagellar motor switch protein FliN [Burkholderia pseudomallei S13]
Length = 165
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 83 DLILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLINGCLIAQGEVVVV 142
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 143 NDKFGIRLTDIITPSERIRK 162
>gi|187925748|ref|YP_001897390.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
PsJN]
gi|187716942|gb|ACD18166.1| flagellar motor switch protein FliN [Burkholderia phytofirmans
PsJN]
Length = 154
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151
>gi|332296622|ref|YP_004438545.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermodesulfobium narugense DSM 14796]
gi|332179725|gb|AEE15414.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Thermodesulfobium narugense DSM 14796]
Length = 386
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + K TLKDV+ L+ G VI + N + I E+ +
Sbjct: 306 ENLLNIPLELSVSLGNAKMTLKDVLELRSGSVIELNKLAGEALEVMINDELIARGEVVVI 365
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ IRIT+ I+ ++
Sbjct: 366 DENFGIRITEIISPRERL 383
>gi|254246640|ref|ZP_04939961.1| Surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia PC184]
gi|124871416|gb|EAY63132.1| Surface presentation of antigens (SPOA) protein [Burkholderia
cenocepacia PC184]
Length = 164
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 82 EMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 141
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 142 NDKFGIRLTDIITPAERIRK 161
>gi|291613060|ref|YP_003523217.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
ES-1]
gi|291583172|gb|ADE10830.1| flagellar motor switch protein FliN [Sideroxydans lithotrophicus
ES-1]
Length = 135
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 29/78 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 53 DMILDIPVKLTVELGHTKMPIKNLLQLAQGSVVELAGLAGEPLDVLINGFLIAQGEVVVV 112
Query: 293 GKNYTIRITDRINFDQKS 310
IR+TD I ++
Sbjct: 113 NDKLGIRLTDIITPSERL 130
>gi|254785478|ref|YP_003072907.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
gi|237686139|gb|ACR13403.1| flagellar motor switch protein FliN [Teredinibacter turnerae T7901]
Length = 147
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + T+++++ L G VI + NG I E+ V +
Sbjct: 68 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 127
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 128 KFGIRMTDVISPSERIKK 145
>gi|170694406|ref|ZP_02885560.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
gi|170140829|gb|EDT09003.1| flagellar motor switch protein FliN [Burkholderia graminis C4D1M]
Length = 155
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 73 DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 133 NDKFGIRLTDIITPSERIRK 152
>gi|89075521|ref|ZP_01161932.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89048793|gb|EAR54364.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 129
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+++ ++D + V I + + ++++++ L G V+
Sbjct: 29 LEELTDETVPITDDERRKL-DTIMDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRIAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|322432978|ref|YP_004210227.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
gi|321165205|gb|ADW70909.1| flagellar motor switch protein FliN [Acidobacterium sp. MP5ACTX9]
Length = 261
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 79/265 (29%), Gaps = 22/265 (8%)
Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
+ L K F + ++ S + + + ++ +F S F +
Sbjct: 16 FCGALAKPFSDACTSTWHLAL-STEPVPTA---PALEDAVIFRCTFSGEVSGQGFALLRH 71
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
V+TL + L Q +S + +E
Sbjct: 72 AEVVTL--------GLQDMLDDTDAFGDEHAMALSSIFEASCNELCQHLSQKSPVTVQVE 123
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
+ + + E +++ + L TT + S+Q S
Sbjct: 124 RMSAPELP----------TDRLAELFLEAEGTKIRVSILLFFDQQLVTTYQNASAQTFSF 173
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ + +N+ R ++ +L++V+ L G V+ + L +G
Sbjct: 174 PEVTGTSTSNLNLVLDVELNVTLRFGQRQLSLREVLDLTSGSVVELDRQVDEPVELVLDG 233
Query: 282 KEIYSCELGRVGKNYTIRITDRINF 306
K + E + NY +RIT +
Sbjct: 234 KVVARGEAVIIDGNYGMRITQVLQQ 258
>gi|28899015|ref|NP_798620.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153836941|ref|ZP_01989608.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|260365239|ref|ZP_05777796.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
gi|260878789|ref|ZP_05891144.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AN-5034]
gi|260897384|ref|ZP_05905880.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
Peru-466]
gi|260899943|ref|ZP_05908338.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AQ4037]
gi|4322005|gb|AAD15908.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus]
gi|28807234|dbj|BAC60504.1| polar flagellar switch protein FliN [Vibrio parahaemolyticus RIMD
2210633]
gi|149749714|gb|EDM60459.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|308088279|gb|EFO37974.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
Peru-466]
gi|308094260|gb|EFO43955.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AN-5034]
gi|308107230|gb|EFO44770.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus
AQ4037]
gi|308115407|gb|EFO52947.1| flagellar motor switch protein FliN [Vibrio parahaemolyticus K5030]
gi|328474448|gb|EGF45253.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
Length = 136
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + + ++++++ L
Sbjct: 24 PSIDVDEVLAAPLEELKDTSRPITDDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|269103168|ref|ZP_06155865.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163066|gb|EEZ41562.1| flagellar motor switch protein FliN [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 128
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S S+D + V I + + ++++++ L G V+
Sbjct: 28 LEELTDDSAPVSDDERRKL-DSILDIPVTISMEVGRTQISIRNLLQLNQGSVVELDRVAG 86
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 87 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 126
>gi|149188093|ref|ZP_01866388.1| flagellar motor switch protein [Vibrio shilonii AK1]
gi|148838081|gb|EDL55023.1| flagellar motor switch protein [Vibrio shilonii AK1]
Length = 136
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P+ + + L S + + V I + + ++++++ L
Sbjct: 24 PEIDVDEVLAAPLDELQDSPAPISEDERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|332531131|ref|ZP_08407045.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
gi|332039416|gb|EGI75828.1| flagellar motor switch FliN [Hylemonella gracilis ATCC 19624]
Length = 122
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ ++S S++ + + V + + K +K ++ L G V
Sbjct: 17 AVEPGGVLSESARGDAPAAD-------INMVLDIPVQLSVELGRTKVPIKHILQLGQGSV 69
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NG I E+ V + IR+TD + ++
Sbjct: 70 VELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERL 115
>gi|157738161|ref|YP_001490845.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
gi|157700015|gb|ABV68175.1| flagellar motor switch protein FliY [Arcobacter butzleri RM4018]
Length = 289
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/287 (12%), Positives = 93/287 (32%), Gaps = 19/287 (6%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
++S L + K L ++ + + S + K + E + + SS
Sbjct: 1 MASDLSNILKSELANTLEQLLSKKTKVD--SVEKFKNDTNLTQLIE--CNVKLDMKGLSS 56
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCIST 152
+LG E + + + + + + S ++ Q +S
Sbjct: 57 RIHFYIPAVSATKFEYLMLGGMGELKESIDDETTDAINE-IISNICGSFSTLVNAQGLSD 115
Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN------------MTIENVASSFVLI 200
++ ++ + + EF +++ + + +
Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYKLMVVFDKLLLPYFSAITGIYQE 175
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
P+ + +T +S ++ + + + Y + + + R+ K LKD++
Sbjct: 176 EPKVQVTPSTPVSNNTGSSNNSSVTPTSKNL-ELLYNVKLKLSVRLGTKIVLLKDILRWD 234
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+G++I + NG +I E V + ++I IN D
Sbjct: 235 VGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 281
>gi|186477686|ref|YP_001859156.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
gi|184194145|gb|ACC72110.1| flagellar motor switch protein FliN [Burkholderia phymatum STM815]
Length = 154
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151
>gi|149377877|ref|ZP_01895606.1| flagellar motor switch protein [Marinobacter algicola DG893]
gi|149357819|gb|EDM46312.1| flagellar motor switch protein [Marinobacter algicola DG893]
Length = 172
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + +++++ L G VI + NG I E+ V +
Sbjct: 92 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 152 KFGIRLTDVISPGERI 167
>gi|71733965|ref|YP_275530.1| flagellar motor switch protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257484905|ref|ZP_05638946.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289629022|ref|ZP_06461976.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289651612|ref|ZP_06482955.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298487823|ref|ZP_07005863.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71554518|gb|AAZ33729.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157548|gb|EFH98628.1| Flagellar motor switch protein fliN [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325125|gb|EFW81194.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329384|gb|EFW85377.1| flagellar motor switch protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330866456|gb|EGH01165.1| flagellar motor switch protein [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330889049|gb|EGH21710.1| flagellar motor switch protein [Pseudomonas syringae pv. mori str.
301020]
gi|330986500|gb|EGH84603.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331011075|gb|EGH91131.1| flagellar motor switch protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 152
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|330972447|gb|EGH72513.1| flagellar motor switch protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 152
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|170722846|ref|YP_001750534.1| flagellar motor switch protein [Pseudomonas putida W619]
gi|169760849|gb|ACA74165.1| flagellar motor switch protein FliN [Pseudomonas putida W619]
Length = 154
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 1/147 (0%)
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE- 225
+ L++E+ + +L + L + +
Sbjct: 6 EITSPEDQALADEWAAALEETGDAGQADIDALLGGDGGSAGAGRLPMEEFASSPRPKENV 65
Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
L P + VNI + + +++++ L G VI + NG I
Sbjct: 66 SLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125
Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
E+ V + + IR+TD I+ ++ K
Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152
>gi|28869174|ref|NP_791793.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213967549|ref|ZP_03395697.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato T1]
gi|301382886|ref|ZP_07231304.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
Max13]
gi|302061096|ref|ZP_07252637.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
K40]
gi|302131288|ref|ZP_07257278.1| flagellar motor switch protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28852414|gb|AAO55488.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927850|gb|EEB61397.1| flagellar motor switch protein FliN [Pseudomonas syringae pv.
tomato T1]
gi|330876027|gb|EGH10176.1| flagellar motor switch protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330964685|gb|EGH64945.1| flagellar motor switch protein [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 152
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|77359749|ref|YP_339324.1| flagellar motor switch protein [Pseudoalteromonas haloplanktis
TAC125]
gi|76874660|emb|CAI85881.1| flagellar biosynthesis; component of motor switch and energizing
[Pseudoalteromonas haloplanktis TAC125]
Length = 132
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S D + V I + K +++++ L G V+
Sbjct: 32 LDELSDAKHEISGDEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 91 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130
>gi|255589691|ref|XP_002535051.1| flagellar motor switch protein, putative [Ricinus communis]
gi|223524127|gb|EEF27333.1| flagellar motor switch protein, putative [Ricinus communis]
Length = 150
Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + T+++++ L G VI + NG I E+ V +
Sbjct: 71 ILDIPVRISMEVGNTEITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 130
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 131 KFGIRMTDVISPSERIKK 148
>gi|330953759|gb|EGH54019.1| flagellar motor switch protein [Pseudomonas syringae Cit 7]
Length = 152
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|261855322|ref|YP_003262605.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
c2]
gi|261835791|gb|ACX95558.1| flagellar motor switch protein FliN [Halothiobacillus neapolitanus
c2]
Length = 139
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + I ++ ++ L G ++ + NG I E+ +
Sbjct: 58 EVLMDVPVTLSMEIGRTSLNIRSLLQLNQGSIVELDRLAGEPLDVLVNGTLIARGEVVVI 117
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I+ ++ K
Sbjct: 118 NEKFGIRLTDVISPAERLRK 137
>gi|212634375|ref|YP_002310900.1| flagellar motor switch protein [Shewanella piezotolerans WP3]
gi|212555859|gb|ACJ28313.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
Length = 126
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ + SE+ + V I + +++++ L G V+
Sbjct: 26 LDEFSSDAAPLSEEEASKL-DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAG 84
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 85 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124
>gi|66046675|ref|YP_236516.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
B728a]
gi|289678974|ref|ZP_06499864.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
FF5]
gi|63257382|gb|AAY38478.1| Surface presentation of antigens (SPOA) protein [Pseudomonas
syringae pv. syringae B728a]
gi|330899438|gb|EGH30857.1| flagellar motor switch protein [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330940698|gb|EGH43709.1| flagellar motor switch protein [Pseudomonas syringae pv. pisi str.
1704B]
gi|330976006|gb|EGH76072.1| flagellar motor switch protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 152
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|323527700|ref|YP_004229853.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
gi|323384702|gb|ADX56793.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1001]
Length = 155
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 73 DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 133 NDKFGIRLTDIITPSERIRK 152
>gi|242281270|ref|YP_002993399.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
2638]
gi|242124164|gb|ACS81860.1| flagellar motor switch protein FliN [Desulfovibrio salexigens DSM
2638]
Length = 229
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ + K + +++ L G V+ + NGK + E + +
Sbjct: 150 ILDIPLDVSAELGRAKMLINELLQLGTGSVVELTKLAGEPLEIYVNGKLVARGEAVVINE 209
Query: 295 NYTIRITDRINFDQKSLKNF 314
+ IR+TD I+ ++ +K+
Sbjct: 210 KFGIRLTDIISPIER-VKHL 228
>gi|71906404|ref|YP_283991.1| Type III secretion system outer membrane O protein [Dechloromonas
aromatica RCB]
gi|71846025|gb|AAZ45521.1| Type III secretion system outer membrane O protein [Dechloromonas
aromatica RCB]
Length = 147
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + K T+K+++ L G V+ + NG I E+ V
Sbjct: 65 DMILDIPVQITVELGRTKITIKNLLQLAHGSVVELDAMAGEPMDVMVNGTLIAQGEVVVV 124
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 125 NDKFGIRLTDIITPSERMRK 144
>gi|331016993|gb|EGH97049.1| flagellar motor switch protein [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 152
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|312962265|ref|ZP_07776757.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
WH6]
gi|311283602|gb|EFQ62191.1| flagellar motor switch protein FliN/FliY [Pseudomonas fluorescens
WH6]
Length = 155
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 76 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 136 KFGIRLTDVISPSERIKK 153
>gi|295678045|ref|YP_003606569.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
gi|295437888|gb|ADG17058.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1002]
Length = 154
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151
>gi|56460300|ref|YP_155581.1| flagellar motor switch protein [Idiomarina loihiensis L2TR]
gi|56179310|gb|AAV82032.1| Flagellar motor switch [Idiomarina loihiensis L2TR]
Length = 151
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ L ++ + +E+ + V I + + ++++++ L G
Sbjct: 41 HSGMDNVQTAELEELSEDKPVTEEEKRKL-DAILDIPVTISMEVGRSQISIRNLLQLNQG 99
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 100 SVVELERVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIRK 149
>gi|226313057|ref|YP_002772951.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
100599]
gi|226096005|dbj|BAH44447.1| flagellar motor switch protein FliY [Brevibacillus brevis NBRC
100599]
Length = 455
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 34/80 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + K +++++ L G +I + N K I E+ +
Sbjct: 374 NLLHDIPLQVTVELGRTKKLIREILDLSAGSIIQLDKLAGEHVDILVNNKLIAKGEVVVI 433
Query: 293 GKNYTIRITDRINFDQKSLK 312
+N+ +R+TD I+ + K
Sbjct: 434 DENFGVRVTDIISQIDRVQK 453
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 10/188 (5%), Positives = 48/188 (25%), Gaps = 6/188 (3%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSS 90
+ +G + + VDI+ + + F
Sbjct: 44 QDALGEIGNISFGSAATALSTLLSQKVDITTPTVSVVNVDELESEFPIPHVAVHVEYTDG 103
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + ++G + + ++ + + + ++
Sbjct: 104 FKGINLLVIRMEDAAVIADLMMGGDGRPASTEMSELHISAVQEAMNQMMGSAATSMSTIF 163
Query: 151 STTQESSPN-LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA----SSFVLIIPQET 205
+ +P ++ ++ + + ++ + + S+ + ++P
Sbjct: 164 NQFINITPPGIDVMDLAQGKGGDSFSDDDSPLVKVSFRLKVGEHGELIDSNIMQLLPLSF 223
Query: 206 LLKTTLIS 213
K
Sbjct: 224 AKKMIDRL 231
>gi|167034914|ref|YP_001670145.1| flagellar motor switch protein [Pseudomonas putida GB-1]
gi|166861402|gb|ABY99809.1| flagellar motor switch protein FliN [Pseudomonas putida GB-1]
Length = 154
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSE 225
+ L++E+ + + +L + L + N++
Sbjct: 6 EITSAEDQALADEWAAALEETGSAGQADIDALLGGDAGSSGSGRLPMEEFASSPKPNENV 65
Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
L P + VNI + + +++++ L G VI + NG I
Sbjct: 66 SLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125
Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
E+ V + + IR+TD I+ ++ K
Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152
>gi|302185373|ref|ZP_07262046.1| flagellar motor switch protein [Pseudomonas syringae pv. syringae
642]
Length = 152
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 73 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 132
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 133 KFGIRLTDVISPSERIKK 150
>gi|121596086|ref|YP_987982.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
gi|222112242|ref|YP_002554506.1| flagellar motor switch protein flin [Acidovorax ebreus TPSY]
gi|120608166|gb|ABM43906.1| flagellar motor switch protein FliN [Acidovorax sp. JS42]
gi|221731686|gb|ACM34506.1| flagellar motor switch protein FliN [Acidovorax ebreus TPSY]
Length = 149
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 68 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 127
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 128 KFGIRLTDVVTPSERL 143
>gi|259907614|ref|YP_002647970.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
gi|224963236|emb|CAX54720.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae Ep1/96]
gi|283477456|emb|CAY73372.1| Flagellar motor switch protein FliN [Erwinia pyrifoliae DSM 12163]
gi|310764880|gb|ADP09830.1| Flagellar motor switch protein FliN [Erwinia sp. Ejp617]
Length = 124
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 42 NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 101
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IRITD I ++ +
Sbjct: 102 SDKFGIRITDIITPSERMHR 121
>gi|163750542|ref|ZP_02157780.1| flagellar motor switch protein [Shewanella benthica KT99]
gi|161329697|gb|EDQ00686.1| flagellar motor switch protein [Shewanella benthica KT99]
Length = 127
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%)
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
E+ + + ++ + + + L + V I +
Sbjct: 4 EDTGDDWAAAMAEQAIEEAQAVELDELTDESQVFPADEAVKFDTIMDIPVTISMEVGRSF 63
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
++++++ L G V+ + NG I E+ V + IR+TD I+ ++
Sbjct: 64 ISIRNLLQLNQGSVVELDRIAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123
Query: 311 LK 312
K
Sbjct: 124 KK 125
>gi|83647848|ref|YP_436283.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
gi|83635891|gb|ABC31858.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
Length = 172
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + +++++ L G VI + NG I E+ V +
Sbjct: 92 ILDIPVTISMEVGNTQIAIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 151
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 152 KFGIRLTDVISPSERIKK 169
>gi|30248479|ref|NP_840549.1| flagellar motor switch FliN [Nitrosomonas europaea ATCC 19718]
gi|30138365|emb|CAD84374.1| possible flagellar motor switch FliN [Nitrosomonas europaea ATCC
19718]
Length = 157
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + +K+++ L G V+ + NG I E+ V
Sbjct: 75 DMILDIPVQLTVELGRTRIAIKNLLQLAQGSVVELNGMAGEPMDVLVNGCLIAQGEVVVV 134
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I ++ K
Sbjct: 135 NEKFGIRLTDIITPSERIRK 154
>gi|292489154|ref|YP_003532041.1| flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
gi|292900272|ref|YP_003539641.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291200120|emb|CBJ47246.1| flagellar motor switch protein [Erwinia amylovora ATCC 49946]
gi|291554588|emb|CBA22222.1| Flagellar motor switch protein FliN [Erwinia amylovora CFBP1430]
Length = 124
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 42 NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 101
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IRITD I ++ +
Sbjct: 102 SDKFGIRITDIITPSERMHR 121
>gi|289808440|ref|ZP_06539069.1| flagellar motor switch protein FliN [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 83
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + T+K+++ L G V+ + NG I E+ V
Sbjct: 1 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 60
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RITD I ++
Sbjct: 61 ADKYGVRITDIITPSERM 78
>gi|77918772|ref|YP_356587.1| putative flagellar motor switch protein FliN [Pelobacter
carbinolicus DSM 2380]
gi|77544855|gb|ABA88417.1| putative flagellar motor switch protein FliN [Pelobacter
carbinolicus DSM 2380]
Length = 103
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + I + +KD++ L+ G +I L N + I E V
Sbjct: 24 LLDIPLEVSVEIGSTRMPIKDLLQLQEGSIIELDKLAGEPLDLYVNSRLIARGEAVMVKD 83
Query: 295 NYTIRITDRINFDQKS 310
Y +R+TD ++ ++
Sbjct: 84 RYGLRLTDVVSPAERL 99
>gi|120554903|ref|YP_959254.1| flagellar motor switch protein [Marinobacter aquaeolei VT8]
gi|120324752|gb|ABM19067.1| flagellar motor switch protein FliN [Marinobacter aquaeolei VT8]
Length = 166
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + +++++ L G VI + NG I E+ V +
Sbjct: 86 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 146 KFGIRLTDVISPGERI 161
>gi|300311367|ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum
seropedicae SmR1]
gi|300074152|gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum
seropedicae SmR1]
Length = 151
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 71 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 131 KFGIRLTDIITPAERIRK 148
>gi|300113611|ref|YP_003760186.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
gi|299539548|gb|ADJ27865.1| flagellar motor switch protein FliN [Nitrosococcus watsonii C-113]
Length = 153
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + I + ++++++ L G V+ + NG I EL V
Sbjct: 72 ELILDIPVTMAMEIGRTRISIRNLLQLNQGSVVELDRLAGEPLDVLVNGCLIAHGELVVV 131
Query: 293 GKNYTIRITDRINFDQKS 310
+ + IR+TD I+ ++
Sbjct: 132 NEKFGIRLTDVISAPERV 149
>gi|300696947|ref|YP_003747608.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CFBP2957]
gi|299073671|emb|CBJ53191.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CFBP2957]
Length = 163
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 81 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 140
Query: 293 GKNYTIRITDRINFDQKS 310
+ + IR+TD I ++
Sbjct: 141 NEKFGIRLTDIITPSERI 158
>gi|147674715|ref|YP_001217647.1| flagellar motor switch protein [Vibrio cholerae O395]
gi|146316598|gb|ABQ21137.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
gi|227014021|gb|ACP10231.1| flagellar motor switch protein FliN [Vibrio cholerae O395]
Length = 138
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + K ++++++ L
Sbjct: 26 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 85
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 86 GSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136
>gi|330502774|ref|YP_004379643.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
gi|328917060|gb|AEB57891.1| flagellar motor switch protein [Pseudomonas mendocina NK-01]
Length = 155
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + T+++++ L G VI + NG I E+ V +
Sbjct: 76 ILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 136 KFGIRLTDVISPSERIKK 153
>gi|262167484|ref|ZP_06035190.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
gi|262024056|gb|EEY42751.1| flagellar motor switch protein FliN [Vibrio cholerae RC27]
Length = 136
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + K ++++++ L
Sbjct: 24 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|212704407|ref|ZP_03312535.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098]
gi|212672128|gb|EEB32611.1| hypothetical protein DESPIG_02462 [Desulfovibrio piger ATCC 29098]
Length = 234
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 7/178 (3%)
Query: 49 IFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLL 108
+E+ ++++ + F + +E L + V +LL
Sbjct: 54 SMEEQRGRLLELTPLPVRRRPFGSVADGIREASCCCAVDLEGLEEPALLVLDRAFVFSLL 113
Query: 109 ENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
E GA + R L+ +E LA++ + A + P + +
Sbjct: 114 EEFFGAGG--FERPGRRPLTALETMLARKFADRFLAAFDLAGKP-SSWHPRCG--HSLSL 168
Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--QETLLKTTLISLSSQNKSENQS 224
+ + V + + + L +P T L K
Sbjct: 169 PRLAVLVPDEQPVWHLAFRSLLGGRPGALHLCLPEDFSTHLAVRSALPGPGRKKNIPD 226
>gi|224157700|ref|XP_002337883.1| predicted protein [Populus trichocarpa]
gi|222869964|gb|EEF07095.1| predicted protein [Populus trichocarpa]
Length = 284
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + R+ + +KD++ L G V+ + N K + E+ V
Sbjct: 206 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 265
Query: 295 NYTIRITDRINFDQKS 310
Y +R+TD ++ ++
Sbjct: 266 KYGVRLTDIVSPIERI 281
>gi|302608146|emb|CBW44422.1| flagellar motor switching and energizing component [Marinobacter
hydrocarbonoclasticus]
Length = 166
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + +++++ L G VI + NG I E+ V +
Sbjct: 86 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 145
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 146 KFGIRLTDVISPGERI 161
>gi|239997092|ref|ZP_04717616.1| flagellar motor switch protein [Alteromonas macleodii ATCC 27126]
Length = 135
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ L +++ + V I + + ++++++ L G V+
Sbjct: 29 EDVQVAELDELTDDAPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVE 87
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 LDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 133
>gi|192361158|ref|YP_001982202.1| flagellar protein [Cellvibrio japonicus Ueda107]
gi|190687323|gb|ACE85001.1| flagellar protein [Cellvibrio japonicus Ueda107]
Length = 133
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + T+++++ L G VI + NG I E+ V +
Sbjct: 54 ILDIPVSISMEVGRTSITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 113
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 114 KFGIRMTDVISPAERIKK 131
>gi|329897651|ref|ZP_08272175.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC3088]
gi|328921100|gb|EGG28509.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC3088]
Length = 102
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VNI + K +KD++ LK G V+ L N + E+ V
Sbjct: 22 EVLQNIPVNISVEVGRTKIRIKDLLKLKQGSVLELERIAGEPLDLLVNNTVVAQGEVVLV 81
Query: 293 GKNYTIRITDRINFDQKS 310
+ Y +R+T+ I + +
Sbjct: 82 NERYGVRLTNVIPSEDRI 99
>gi|17548598|ref|NP_521938.1| flagellar motor switch protein FliN [Ralstonia solanacearum
GMI1000]
gi|17430846|emb|CAD17528.1| probable flagellar motor switch protein flin [Ralstonia
solanacearum GMI1000]
Length = 156
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 74 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 133
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I ++ K
Sbjct: 134 NEKFGIRLTDIITPSERIRK 153
>gi|218461631|ref|ZP_03501722.1| flagellar C-ring motor switch protein [Rhizobium etli Kim 5]
Length = 98
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
+ P LLA+LTG LGD+ + KI S+ G +Y +F P + K + LDV ++Y C+ G +
Sbjct: 12 AMDPALLAKLTGGLGDRGRVSKICSAFGEVYSEFFPDVIKSETGLDVTVNYLGCEIGYKN 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIG 98
H+I N A+L +WS N +
Sbjct: 72 HLIDDLSANVTLVDATLRNWSQNVTLA 98
>gi|83589636|ref|YP_429645.1| flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
gi|83572550|gb|ABC19102.1| Flagellar motor switch FliN [Moorella thermoacetica ATCC 39073]
Length = 124
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 31/77 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ + + + + + T+K+++ LK G VI L N + E+ +
Sbjct: 45 KRIADVPLRLKAELGRTRMTVKEILDLKDGSVIVLDKLAGEPVDLLVNDIPLAKGEVVVI 104
Query: 293 GKNYTIRITDRINFDQK 309
+ +RI +++
Sbjct: 105 NDAFGVRINSLAAVEEE 121
>gi|237755435|ref|ZP_04584060.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692399|gb|EEP61382.1| flagellar motor switch phosphatase FliY [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 173
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I I K +++++ L VI L NG + EL +V
Sbjct: 89 LLDIPITITVEIGSKSMPIEEILKLAPSSVIDLDRYLNEPIDLKVNGVLVAKGELYQVDD 148
Query: 295 NYTIRITDRINFDQKS 310
N+ I+IT+ + +++
Sbjct: 149 NFAIKITEILTKEERV 164
>gi|74317626|ref|YP_315366.1| flagellar motor switch/type III secretory pathway protein FliN
[Thiobacillus denitrificans ATCC 25259]
gi|74057121|gb|AAZ97561.1| flagellar motor switch/type III secretory pathway protein FliN
[Thiobacillus denitrificans ATCC 25259]
Length = 132
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 52 ILDIPVLLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 111
Query: 295 NYTIRITDRINFDQKSLK 312
+ +R+TD I ++ K
Sbjct: 112 KFGVRLTDIITPAERIRK 129
>gi|331006683|ref|ZP_08329961.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC1989]
gi|330419515|gb|EGG93903.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC1989]
Length = 150
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 219 KSENQSEDLIDPFA---RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + + + V I + T+++++ L G VI
Sbjct: 52 EEFDNDPTAGKAISPELDLILDIPVTISMEVGSTSITIRNLLQLNQGSVIELDRLAGEPL 111
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + + IR+TD I+ ++ K
Sbjct: 112 NVLVNGTLIAHGEVVVVNEKFGIRMTDVISPAERIKK 148
>gi|42524696|ref|NP_970076.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
HD100]
gi|39576906|emb|CAE78135.1| flagellar motor switch protein FliN [Bdellovibrio bacteriovorus
HD100]
Length = 122
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K + +++ L G VI + N K I E V +
Sbjct: 43 ILDIPLKVSVELGRTKMPVSELLNLTQGSVIELSKLAGEPMEVYVNDKLIARGEAVVVNE 102
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD I+ ++
Sbjct: 103 KFGVRLTDIISPAERV 118
>gi|304390238|ref|ZP_07372192.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304326720|gb|EFL93964.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 250
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P+ + + + + + Y + + + I K + DV+ L
Sbjct: 137 PKSAPAEEAKAAPEGPITQSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSP 196
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G VI + A + NG+ I E+ V + Y IRIT+ ++
Sbjct: 197 GSVIELDRSAGSAADVMVNGRLIARGEIVVVDEEYGIRITEIVSLAD 243
>gi|325920566|ref|ZP_08182488.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
19865]
gi|325548959|gb|EGD19891.1| flagellar motor switch protein FliN [Xanthomonas gardneri ATCC
19865]
Length = 112
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 34/91 (37%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ + D + V + + + +++++ L G V+ +
Sbjct: 18 QPERDLNATDLNLDVILDVPVTLSLEVGRARIPIRNLLQLNQGSVVELERGAGEPLDVYV 77
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
NG I E+ + + IR+TD ++ ++
Sbjct: 78 NGTLIAHGEVVVINDRFGIRLTDVVSPSERI 108
>gi|119469994|ref|ZP_01612799.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
gi|119446704|gb|EAW27977.1| flagellar motor switch protein [Alteromonadales bacterium TW-7]
Length = 132
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
++ + + + V I + K +++++ L G V+
Sbjct: 32 LDELSDEKSEITGEEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 91 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130
>gi|146307836|ref|YP_001188301.1| flagellar motor switch protein [Pseudomonas mendocina ymp]
gi|145576037|gb|ABP85569.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
Length = 155
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + T+++++ L G VI + NG I E+ V +
Sbjct: 76 ILDIPVSISMEVGNTDITIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 136 KFGIRLTDVISPSERIKK 153
>gi|319764507|ref|YP_004128444.1| flagellar motor switch protein flin [Alicycliphilus denitrificans
BC]
gi|317119068|gb|ADV01557.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
BC]
Length = 151
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 70 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 130 KFGIRLTDVVTPSERL 145
>gi|146296293|ref|YP_001180064.1| flagellar motor switch protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409869|gb|ABP66873.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 377
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 38/104 (36%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ +S + + E + + I + + +++++ G +I
Sbjct: 274 ERVYNVSPVQFESFDEEEERRYPENIELILDVPLEITVELGRTQKLVREILEFSTGSIIE 333
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK I E+ + +++ +RITD +N +
Sbjct: 334 LDKLAGEPVDILVNGKVIAKGEVVVIDESFGVRITDIVNPSNRL 377
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/206 (12%), Positives = 65/206 (31%), Gaps = 7/206 (3%)
Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFS 84
+ + +G + ++ V I+ K+ + F
Sbjct: 25 AISDQDKDVLGEIGNISMGTAATTLSILLNQKVSITTPIVSVLKWDELPKEFPVPYVAIK 84
Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQI 142
+ V + + ++G S E +L LS +++ + +
Sbjct: 85 VVYKEGLDGVNLLVLKKEDVEIIADLMMGGSGSIEFSEELSELQLSAIQEA-MNQMVGSA 143
Query: 143 SAVLNQCISTTQESSP--NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVL 199
S L+ ++ + SP + + + S + + + MTI + + S +
Sbjct: 144 STSLSSMLNLKIDISPPEAFVIDFAQNAEEMIPELKSADEIVKVAFRMTIGDLIDSQIMQ 203
Query: 200 IIPQETLLKTTLISLSSQNKSENQSE 225
+IP + + L+S + + E
Sbjct: 204 LIPVDFAKQLVNAMLNSTLSTSSVQE 229
>gi|330721398|gb|EGG99463.1| Flagellar motor switch protein FliN [gamma proteobacterium
IMCC2047]
Length = 132
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + T+++++ L G VI + NG I E+ V +
Sbjct: 53 ILDIPVTVSMEVGNTDITIRNLLQLNKGSVIELDRMAGEPLDVLVNGTLIAHGEVVVVNE 112
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD ++ ++ K
Sbjct: 113 KFGIRLTDVVSPSERIQK 130
>gi|157961197|ref|YP_001501231.1| flagellar motor switch protein [Shewanella pealeana ATCC 700345]
gi|157846197|gb|ABV86696.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
Length = 126
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 40/113 (35%)
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + + L N + + V I + +++++ L
Sbjct: 12 AMAEQAIEEAKAVELDEFNSDGAPLSEEEASKLDAIMDIPVTISMEVGRSFINIRNLLQL 71
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 72 NQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124
>gi|320529421|ref|ZP_08030509.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
gi|320138387|gb|EFW30281.1| flagellar motor switch protein FliN [Selenomonas artemidis F0399]
Length = 395
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 36/75 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + ++ + K ++KD++ L G ++ + NGK + E+ + +
Sbjct: 316 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 375
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ ++ ++
Sbjct: 376 NFGVRITEIVSPLER 390
>gi|313896159|ref|ZP_07829713.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975584|gb|EFR41045.1| flagellar motor switch protein FliN [Selenomonas sp. oral taxon 137
str. F0430]
Length = 399
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 36/75 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + ++ + K ++KD++ L G ++ + NGK + E+ + +
Sbjct: 320 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 379
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ ++ ++
Sbjct: 380 NFGVRITEIVSPLER 394
>gi|326319063|ref|YP_004236735.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375899|gb|ADX48168.1| flagellar motor switch protein FliN [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 148
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 67 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 126
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 127 KFGIRLTDVVTPSERL 142
>gi|229591842|ref|YP_002873961.1| flagellar motor switch protein [Pseudomonas fluorescens SBW25]
gi|229363708|emb|CAY51093.1| probable flagellar motor switch protein [Pseudomonas fluorescens
SBW25]
Length = 155
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 76 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 135
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 136 KFGIRLTDVISPSERIKK 153
>gi|315654592|ref|ZP_07907498.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
51333]
gi|315491056|gb|EFU80675.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii ATCC
51333]
Length = 250
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 1/102 (0%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ +S E + Y + + + I K + DV+ L G VI
Sbjct: 143 EEAKTAPEGPITQSTATPEQRAESMK-LLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIE 201
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ A + NG+ I E+ V + Y IRIT+ ++
Sbjct: 202 LDRSAGSAADVMVNGRLIARGEIVVVDEEYGIRITEIVSLAD 243
>gi|253998476|ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
gi|313200551|ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688]
gi|253985155|gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus sp. SIP3-4]
gi|312439867|gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688]
Length = 145
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 65 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 124
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 125 KFGIRLTDIITPAERIRK 142
>gi|300693351|ref|YP_003749324.1| flagellar motor switching and energizing component. flin/mopa/spao
family [Ralstonia solanacearum PSI07]
gi|299075388|emb|CBJ34683.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum PSI07]
Length = 169
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ S+ S + + V + + K +K+++ L G V+ +
Sbjct: 73 DDSKKPSPTQRNDI-DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDV 131
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
NG I E+ V + + IR+TD I ++ K
Sbjct: 132 LVNGYLIAQGEVVVVNEKFGIRLTDIITPSERIRK 166
>gi|104782810|ref|YP_609308.1| flagellar motor switch protein [Pseudomonas entomophila L48]
gi|95111797|emb|CAK16521.1| flagellar motor switch protein FliN [Pseudomonas entomophila L48]
Length = 154
Score = 76.2 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 1/147 (0%)
Query: 167 DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSS-QNKSENQSE 225
+ L++E+ + +L L + N++
Sbjct: 6 EISSPEEQALADEWAAALEETGDAGQADIDALLGGDAGHAGGDRLPMEEFASSPKLNENV 65
Query: 226 DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIY 285
L P + V+I + + +++++ L G VI + NG I
Sbjct: 66 SLEGPNLDVILDIPVSISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIA 125
Query: 286 SCELGRVGKNYTIRITDRINFDQKSLK 312
E+ V + + IR+TD I+ ++ K
Sbjct: 126 HGEVVVVNEKFGIRLTDVISPSERIKK 152
>gi|70729041|ref|YP_258775.1| flagellar motor switch protein [Pseudomonas fluorescens Pf-5]
gi|68343340|gb|AAY90946.1| flagellar motor switch protein FliN [Pseudomonas fluorescens Pf-5]
Length = 153
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + +++++ L G VI + NG I E+ V +
Sbjct: 74 ILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 133
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 134 KFGIRLTDVISPSERIKK 151
>gi|119775424|ref|YP_928164.1| flagellar motor switch protein [Shewanella amazonensis SB2B]
gi|119767924|gb|ABM00495.1| flagellar motor switch protein FliN [Shewanella amazonensis SB2B]
Length = 124
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+++++ S + + V I + ++++++ L G V+
Sbjct: 28 KDETKPLSSEEAAKL-DAILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAGEPLD 86
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 87 VMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122
>gi|221069290|ref|ZP_03545395.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
gi|264676602|ref|YP_003276508.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
gi|299531253|ref|ZP_07044663.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
gi|220714313|gb|EED69681.1| flagellar motor switch protein FliN [Comamonas testosteroni KF-1]
gi|262207114|gb|ACY31212.1| flagellar motor switch protein FliN [Comamonas testosteroni CNB-2]
gi|298720660|gb|EFI61607.1| flagellar motor switch protein FliN [Comamonas testosteroni S44]
Length = 144
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 63 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 123 KFGIRLTDVVTPSERL 138
>gi|330826723|ref|YP_004390026.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
K601]
gi|329312095|gb|AEB86510.1| flagellar motor switch protein FliN [Alicycliphilus denitrificans
K601]
Length = 151
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 70 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 129
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 130 KFGIRLTDVVTPSERL 145
>gi|27365288|ref|NP_760816.1| flagellar motor switch protein [Vibrio vulnificus CMCP6]
gi|37680657|ref|NP_935266.1| flagellar motor switch protein [Vibrio vulnificus YJ016]
gi|320155672|ref|YP_004188051.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
gi|27361435|gb|AAO10343.1| Flagellar motor switch protein fliN [Vibrio vulnificus CMCP6]
gi|37199406|dbj|BAC95237.1| polar flagellar switch protein FliN [Vibrio vulnificus YJ016]
gi|319930984|gb|ADV85848.1| flagellar motor switch protein FliN [Vibrio vulnificus MO6-24/O]
Length = 136
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P+ + + L + + V I + + ++++++ L
Sbjct: 24 PEIDVDEVLAAPLEELKDTSAPITADERRKLDTIMDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|91785620|ref|YP_560826.1| flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
gi|91689574|gb|ABE32774.1| Flagellar motor switch protein FliN [Burkholderia xenovorans LB400]
Length = 154
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151
>gi|327481258|gb|AEA84568.1| flagellar motor switch protein [Pseudomonas stutzeri DSM 4166]
Length = 160
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 35/78 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + + ++++++ L G V+ + NG I E+ V +
Sbjct: 81 ILDIPVSISMEVGSTEISIRNLLQLNQGSVVELDRLAGEPLDVLVNGTLIAHGEVVVVNE 140
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 141 KFGIRLTDVISPTERIKK 158
>gi|90406811|ref|ZP_01215003.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
gi|90312048|gb|EAS40141.1| flagellar motor switch protein [Psychromonas sp. CNPT3]
Length = 129
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + + +++++ L G V+ + NG I E+ V
Sbjct: 48 DSIMDIPVTISMEVGRSRINIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVV 107
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I+ +++ K
Sbjct: 108 NDKFGIRLTDVISQNERIRK 127
>gi|167623387|ref|YP_001673681.1| flagellar motor switch protein [Shewanella halifaxensis HAW-EB4]
gi|167353409|gb|ABZ76022.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
Length = 125
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
N+S SED + + V I + +++++ L G V+
Sbjct: 26 DEFSNESAPLSEDEVSKL-DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRIAGE 84
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 85 PLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 123
>gi|291538508|emb|CBL11619.1| flagellar motor switch protein FliN [Roseburia intestinalis XB6B4]
Length = 392
Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 34/97 (35%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ Q + + + + + + ++K+++ G +I
Sbjct: 296 VNVQPAQFQAFTGAVPGNFQPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELN 355
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ NGK + E+ + ++Y IRIT+ I
Sbjct: 356 RIAGEPIDVLVNGKFVAKGEVVVIEESYGIRITEIIK 392
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/211 (11%), Positives = 67/211 (31%), Gaps = 8/211 (3%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88
+ + + ++ V+IS +S I ++++ VF A
Sbjct: 31 QEKDAIGEISNISMGTAATTLFSLVNRKVEISTPVVAFANWSDICDAYEKPCVFIRIAYT 90
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + V + + ++G + + + + + L+
Sbjct: 91 VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 150
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIEN-VASSFVLIIPQ 203
++ + SP D D+ + +EF+ I+ + I + V S + + P
Sbjct: 151 MLNKVIDISPPSADLIDLQ--QTIDESQIDEFLAGEFVKISFRLEIGDLVDSEIMQLYPV 208
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
+ S+ + N + + + +
Sbjct: 209 SFAKEMCANVTSNMEEDSNSTAGMSEKENTQ 239
>gi|309779461|ref|ZP_07674222.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
gi|308921702|gb|EFP67338.1| flagellar motor switch protein FliN [Ralstonia sp. 5_7_47FAA]
Length = 151
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 46/144 (31%)
Query: 169 LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLI 228
N +++ + M + A+ P S + + +
Sbjct: 5 PTMNPEANADDIDVEMTMEEAMALEAAQRAAANPPAAAPAAAESSPVFKPLTADGLGGAQ 64
Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
+ V + + K +K+++ L G V+ + NG I E
Sbjct: 65 RNDIDMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGE 124
Query: 289 LGRVGKNYTIRITDRINFDQKSLK 312
+ V + + IR+TD I ++ K
Sbjct: 125 VVVVNEKFGIRLTDIITPSERIRK 148
>gi|260776476|ref|ZP_05885371.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607699|gb|EEX33964.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
Length = 136
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 41/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P+ + + L + + + + V I + + ++++++ L
Sbjct: 24 PEVDVDEVMAAQLDELQDTGSPISEDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|240145491|ref|ZP_04744092.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
L1-82]
gi|257202306|gb|EEV00591.1| flagellar motor switch phosphatase FliY [Roseburia intestinalis
L1-82]
gi|291536016|emb|CBL09128.1| flagellar motor switch protein FliN [Roseburia intestinalis M50/1]
Length = 392
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 34/97 (35%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ Q + + + + + + ++K+++ G +I
Sbjct: 296 VNVQPAQFQAFTGAVPGNFQPENIDLIMDVPLEVTVELGRTSKSIKEILDFTPGTIIELN 355
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ NGK + E+ + ++Y IRIT+ I
Sbjct: 356 RIAGEPIDVLVNGKFVAKGEVVVIEESYGIRITEIIK 392
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/211 (11%), Positives = 66/211 (31%), Gaps = 8/211 (3%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS-QASL 88
+ + + ++ V+IS +S I ++++ VF A
Sbjct: 31 QEKDAIGEISNISMGTAATTLFSLVNRKVEISTPVVAFANWSDICDAYEKPCVFIRIAYT 90
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + V + + ++G + + + + + L+
Sbjct: 91 VGLDGSNILVLKEHDVKVITDLMMGGDGTNTDGELGELHLSAISEAMNQMMGSAATSLSS 150
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIEN-VASSFVLIIPQ 203
+ + SP D D+ + +EF+ I+ + I + V S + + P
Sbjct: 151 MLDKVIDISPPSADLIDLQ--QTIDESQIDEFLAGEFVKISFRLEIGDLVDSEIMQLYPV 208
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
+ S+ + N + + + +
Sbjct: 209 SFAKEMCANVTSNMEEDSNSTAGMSEKENTQ 239
>gi|188997559|ref|YP_001931810.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932626|gb|ACD67256.1| flagellar motor switch protein FliN [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 194
Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
E S ++++ + + I + K ++++++ L VI
Sbjct: 84 PLKESEKKESFTKEEFSPEILNKL-DILLDIPITITVEVGSKSMSIEEILKLAPSSVIDL 142
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
L NG + EL +V N+ I+IT+ + +++
Sbjct: 143 DKYLNEPIDLKVNGVLVAKGELYQVDDNFAIKITEILTKEERV 185
>gi|296157440|ref|ZP_06840275.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
gi|295892212|gb|EFG71995.1| flagellar motor switch protein FliN [Burkholderia sp. Ch1-1]
Length = 154
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 132 NDKFGIRLTDIITPSERIRK 151
>gi|254506934|ref|ZP_05119073.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
16]
gi|323491453|ref|ZP_08096637.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
gi|323496547|ref|ZP_08101601.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
gi|219550219|gb|EED27205.1| flagellar motor switch phosphatase FliY [Vibrio parahaemolyticus
16]
gi|323314322|gb|EGA67402.1| flagellar motor switch protein [Vibrio brasiliensis LMG 20546]
gi|323318391|gb|EGA71348.1| flagellar motor switch protein [Vibrio sinaloensis DSM 21326]
Length = 136
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 41/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P+ + + L + + D + V I + + ++++++ L
Sbjct: 24 PEIDVDEVMSAQLDELEDTSSPISDDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|207728360|ref|YP_002256754.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
gi|206591606|emb|CAQ57218.1| flagellar motor switch protein flin [Ralstonia solanacearum MolK2]
Length = 154
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 31/78 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKS 310
+ + IR+TD I ++
Sbjct: 132 NEKFGIRLTDIITPSERI 149
>gi|292669770|ref|ZP_06603196.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
43541]
gi|292648567|gb|EFF66539.1| flagellar motor switch phosphatase FliY [Selenomonas noxia ATCC
43541]
Length = 393
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 36/75 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + ++ + K ++KD++ L G ++ + NGK + E+ + +
Sbjct: 314 ILDVPLQVNVELGRTKKSIKDILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 373
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ ++ ++
Sbjct: 374 NFGVRITEIVSPLER 388
>gi|94987083|ref|YP_595016.1| flagellar motor switch/type III secretory pathway protein [Lawsonia
intracellularis PHE/MN1-00]
gi|94731332|emb|CAJ54695.1| Flagellar motor switch/type III secretory pathway protein [Lawsonia
intracellularis PHE/MN1-00]
Length = 164
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ + + + +++ L G V+ + NGK + E + +
Sbjct: 85 ILDIPLDVSAELGRTRLLINELLQLGQGSVVELNKLAGEPLEVFVNGKLVARGEAVVINE 144
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD I+ ++
Sbjct: 145 KFGVRLTDIISPIERV 160
>gi|315657503|ref|ZP_07910385.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491975|gb|EFU81584.1| flagellar motor switch phosphatase FliY [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 250
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 36/89 (40%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ + + Y + + + I K + DV+ L G VI + A +
Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
NG+ I E+ V + Y IRIT+ ++
Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLAD 243
>gi|298346004|ref|YP_003718691.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
43063]
gi|298236065|gb|ADI67197.1| flagellar motor switch protein FliN [Mobiluncus curtisii ATCC
43063]
Length = 250
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 36/89 (40%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ + + Y + + + I K + DV+ L G VI + A +
Sbjct: 155 QSTATPEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRSAGSAADVMV 214
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQ 308
NG+ I E+ V + Y IRIT+ ++
Sbjct: 215 NGRLIARGEIVVVDEEYGIRITEIVSLAD 243
>gi|15642124|ref|NP_231756.1| flagellar motor switch protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121727203|ref|ZP_01680370.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
gi|153213272|ref|ZP_01948684.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
gi|153803022|ref|ZP_01957608.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
gi|153818985|ref|ZP_01971652.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
gi|153822883|ref|ZP_01975550.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|153828628|ref|ZP_01981295.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
gi|227082250|ref|YP_002810801.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
gi|254291361|ref|ZP_04962154.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
gi|254849210|ref|ZP_05238560.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
gi|297582023|ref|ZP_06943942.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
gi|298497853|ref|ZP_07007660.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
gi|9656675|gb|AAF95270.1| flagellar motor switch protein FliN [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121630448|gb|EAX62841.1| flagellar motor switch protein FliN [Vibrio cholerae V52]
gi|124116072|gb|EAY34892.1| flagellar motor switch protein FliN [Vibrio cholerae 1587]
gi|124121420|gb|EAY40163.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-3]
gi|126510480|gb|EAZ73074.1| flagellar motor switch protein FliN [Vibrio cholerae NCTC 8457]
gi|126519579|gb|EAZ76802.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|148875899|gb|EDL74034.1| flagellar motor switch protein FliN [Vibrio cholerae 623-39]
gi|150422691|gb|EDN14645.1| flagellar motor switch protein FliN [Vibrio cholerae AM-19226]
gi|227010138|gb|ACP06350.1| flagellar motor switch protein FliN [Vibrio cholerae M66-2]
gi|254844915|gb|EET23329.1| flagellar motor switch protein FliN [Vibrio cholerae MO10]
gi|297533718|gb|EFH72560.1| flagellar motor switch protein FliN [Vibrio cholerae RC385]
gi|297542186|gb|EFH78236.1| flagellar motor switch protein FliN [Vibrio cholerae MAK 757]
Length = 138
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + K ++++++ L
Sbjct: 26 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 85
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 86 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136
>gi|258621112|ref|ZP_05716146.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
gi|261209861|ref|ZP_05924162.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
gi|262166226|ref|ZP_06033963.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
gi|262170888|ref|ZP_06038566.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|258586500|gb|EEW11215.1| Flagellar motor switch protein fliN [Vibrio mimicus VM573]
gi|260841047|gb|EEX67572.1| flagellar motor switch protein FliN [Vibrio sp. RC341]
gi|261891964|gb|EEY37950.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|262025942|gb|EEY44610.1| flagellar motor switch protein FliN [Vibrio mimicus VM223]
Length = 136
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + K ++++++ L
Sbjct: 24 PDIDVDEILAAPLEELKNTAPPISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|83747641|ref|ZP_00944677.1| FliN [Ralstonia solanacearum UW551]
gi|207739722|ref|YP_002258115.1| flagellar motor switch protein flin [Ralstonia solanacearum
IPO1609]
gi|83725693|gb|EAP72835.1| FliN [Ralstonia solanacearum UW551]
gi|206593104|emb|CAQ60010.1| flagellar motor switch protein flin [Ralstonia solanacearum
IPO1609]
Length = 154
Score = 75.8 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 72 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 131
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I ++ K
Sbjct: 132 NEKFGIRLTDIITPSERIRK 151
>gi|299068764|emb|CBJ40004.1| flagellar motor switching and energizing component. fliN/mopA/spaO
family [Ralstonia solanacearum CMR15]
Length = 158
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 76 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 135
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I ++ K
Sbjct: 136 NEKFGIRLTDIITPSERIRK 155
>gi|307731350|ref|YP_003908574.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
gi|307585885|gb|ADN59283.1| flagellar motor switch protein FliN [Burkholderia sp. CCGE1003]
Length = 155
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 73 DMILDIPVQMTVELGRTKLAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 132
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I ++ K
Sbjct: 133 NDKFGIRLTDIITPSERIRK 152
>gi|121586780|ref|ZP_01676562.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
gi|153825567|ref|ZP_01978234.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
gi|229507790|ref|ZP_04397295.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
gi|229511973|ref|ZP_04401452.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|229513776|ref|ZP_04403238.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
gi|229519109|ref|ZP_04408552.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
gi|229522078|ref|ZP_04411495.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
gi|229524127|ref|ZP_04413532.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
VL426]
gi|229528863|ref|ZP_04418253.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
gi|229607335|ref|YP_002877983.1| flagellar motor switch protein [Vibrio cholerae MJ-1236]
gi|255745136|ref|ZP_05419085.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
gi|262153474|ref|ZP_06028604.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
gi|262191374|ref|ZP_06049564.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
gi|121548947|gb|EAX58986.1| flagellar motor switch protein FliN [Vibrio cholerae 2740-80]
gi|149740718|gb|EDM54817.1| flagellar motor switch protein FliN [Vibrio cholerae MZO-2]
gi|229332637|gb|EEN98123.1| flagellar motor switch protein FliN [Vibrio cholerae 12129(1)]
gi|229337708|gb|EEO02725.1| flagellar motor switch protein FliN [Vibrio cholerae bv. albensis
VL426]
gi|229341003|gb|EEO06008.1| flagellar motor switch protein FliN [Vibrio cholerae TM 11079-80]
gi|229343798|gb|EEO08773.1| flagellar motor switch protein FliN [Vibrio cholerae RC9]
gi|229348957|gb|EEO13914.1| flagellar motor switch protein FliN [Vibrio cholerae TMA 21]
gi|229351938|gb|EEO16879.1| flagellar motor switch protein FliN [Vibrio cholerae B33]
gi|229355295|gb|EEO20216.1| flagellar motor switch protein FliN [Vibrio cholerae BX 330286]
gi|229369990|gb|ACQ60413.1| flagellar motor switch protein FliN [Vibrio cholerae MJ-1236]
gi|255736966|gb|EET92362.1| flagellar motor switch protein FliN [Vibrio cholera CIRS 101]
gi|262030711|gb|EEY49345.1| flagellar motor switch protein FliN [Vibrio cholerae INDRE 91/1]
gi|262032749|gb|EEY51297.1| flagellar motor switch protein FliN [Vibrio cholerae CT 5369-93]
gi|327484653|gb|AEA79060.1| Flagellar motor switch protein FliN [Vibrio cholerae LMA3894-4]
Length = 136
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + K ++++++ L
Sbjct: 24 PDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|302392381|ref|YP_003828201.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetohalobium arabaticum DSM 5501]
gi|302204458|gb|ADL13136.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Acetohalobium arabaticum DSM 5501]
Length = 408
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 40/106 (37%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
++ + ++ + + + + R+ K +KD++ L G VI
Sbjct: 302 EESVDVQSVEFSQLGEGQTEQGQSKIDLIKDVPLEVTVRLGKTKMLIKDILELGNGSVIE 361
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
L NGK I E+ + +N+ R+TD ++ ++
Sbjct: 362 LDKLAGESVDLLVNGKLIAKGEVVVIDENFGFRVTDIVSPMERITN 407
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/203 (9%), Positives = 61/203 (30%), Gaps = 4/203 (1%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-LSS 90
+ +G + +D V+I+ + F +I ++ V +
Sbjct: 48 KDAIGEIGNISMGSAATALYSLLDETVEITAPEVELVTFQKLIQEYERPCVVVDVEYIEG 107
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + + ++G N + + + + S ++ +
Sbjct: 108 LEGSNLLIIEQQDAAIISDLMMGGDGNNPDAELNELHLSAVSEAMNQMMGSASTSMSTIM 167
Query: 151 S-TTQESSPNLEDFYDIDYLK-KNTNRLSNEFVTTINMNMTIENVA-SSFVLIIPQETLL 207
SP + ++ + K+ + ++ V ++ ++TI V S + ++P +
Sbjct: 168 QGDKVNISPPNAELLTLNTDEIKSRSFQPDDEVVKVSFDLTIGEVIDSEILQLMPLDFAK 227
Query: 208 KTTLISLSSQNKSENQSEDLIDP 230
+ +
Sbjct: 228 ELVAYLTDPDPSERAEEPQESGE 250
>gi|315636304|ref|ZP_07891554.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
gi|315479393|gb|EFU70076.1| flagellar motor switch protein FliY [Arcobacter butzleri JV22]
Length = 288
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 36/287 (12%), Positives = 94/287 (32%), Gaps = 20/287 (6%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSS 93
++S L + K L ++ + + S + K + E + + SS
Sbjct: 1 MASDLSNILKSELANTLEQLLSKKTKVD--SVEKFKNDTNLTQLIE--CNVKLDMKGLSS 56
Query: 94 NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCIST 152
+LG E + + + ++ S ++ Q +S
Sbjct: 57 RIHFYIPAVSATKFEYLMLGGMGELKETIDD-ETTDAVNEIVSNICGSFSTLVNAQGLSD 115
Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN------------MTIENVASSFVLI 200
++ ++ + + EF +++ + + +
Sbjct: 116 VGSIKSEIKSTIKVENSVLSAKDDAYEFTISLDDEKYRLMVVFDKLLLPYFSAITGIYQE 175
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
P+ ++ + +S ++ + + + + + Y + + + R+ K LKD++
Sbjct: 176 EPKVQVVPSAPVSNNTGSSNSSVTPTSKNL--ELLYNVKLKLSVRLGTKIVLLKDILRWD 233
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+G++I + NG +I E V + ++I IN D
Sbjct: 234 VGEIIELEQMVNEPLEILINGVKIGEGEAVIVEGKFGLKIKRIINED 280
>gi|332140590|ref|YP_004426328.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550612|gb|AEA97330.1| flagellar motor switch protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 135
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ L +++ + V I + + ++++++ L G V+
Sbjct: 29 EDVQVAELDELTDDAPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVE 87
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 LDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 133
>gi|261252330|ref|ZP_05944903.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
gi|260935721|gb|EEX91710.1| flagellar motor switch protein FliN [Vibrio orientalis CIP 102891]
Length = 136
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 40/111 (36%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + + + + V I + + ++++++ L
Sbjct: 24 PSIDVDEVMNAQLDELEDTSSPISEDERRKLDTILDIPVTISMEVGRSQISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|170725981|ref|YP_001760007.1| flagellar motor switch protein [Shewanella woodyi ATCC 51908]
gi|169811328|gb|ACA85912.1| flagellar motor switch protein FliN [Shewanella woodyi ATCC 51908]
Length = 129
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + +++++ L G V+ + NG I E+ V
Sbjct: 48 DAIMDIPVTISMEVGRSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVV 107
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 108 NDKFGIRLTDVISQTERIKK 127
>gi|120613023|ref|YP_972701.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
gi|120591487|gb|ABM34927.1| flagellar motor switch protein FliN [Acidovorax citrulli AAC00-1]
Length = 148
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
S S++ + + + V + + K +K ++ L G V+
Sbjct: 48 EPVRPFSSSNEAPVNDINM---------VLDIPVQLSVELGRTKVPIKYILQLAQGSVVE 98
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG I E+ V + IR+TD + ++
Sbjct: 99 LDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERL 142
>gi|262404471|ref|ZP_06081026.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
gi|262349503|gb|EEY98641.1| flagellar motor switch protein FliN [Vibrio sp. RC586]
Length = 136
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 39/111 (35%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P + + L + D + V I + K ++++++ L
Sbjct: 24 PDIDVDEILAAPLEELKNTAPAISDDERRKLDTIMDIPVTISMEVGRSKISIRNLLQLNQ 83
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 GSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 134
>gi|241763647|ref|ZP_04761697.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
gi|241367122|gb|EER61488.1| flagellar motor switch protein FliN [Acidovorax delafieldii 2AN]
Length = 145
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 64 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 123
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 124 KFGIRLTDVVTPSERL 139
>gi|89072282|ref|ZP_01158861.1| putative flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89051814|gb|EAR57266.1| putative flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 257
Score = 75.8 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 44/287 (15%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDL--------DVDISYTSCQSGKFSHIIHSFKENFV 82
+ K + L D ++ +S TS ++
Sbjct: 6 LGKPIHIIKDELANILSDSLLGLTDQIQKWVKTHELTMSVTSIDFQSPKQ-----GQHTA 60
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
F+ A CS L+I L + + + + ++ ++ + +L +R
Sbjct: 61 FTVAHNDG--GMMNFRCSAPLLIALADRFYHSPVNRLNSVKSQVITKSDLRLQERIGQLF 118
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
SA + + + + LS++ I +++T E ++ I
Sbjct: 119 SAQVAP-----------------EEMWQACDSSLSDDIGLVIQLSVTCEETIGDIIICID 161
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ T + + +L F+++ V ++T + K+ L V+ LK G
Sbjct: 162 SALIQTLTSVIG------LQPTSELNALFSQQLESTKVKLNTVLCEKQMPLDQVLQLKPG 215
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ + + +S + +++ + + IN +
Sbjct: 216 DIFDIDLMQSS--TISIGQEYLFNGHVAEQNGQLVL----IINTSKD 256
>gi|312173312|emb|CBX81567.1| Flagellar motor switch protein FliN [Erwinia amylovora ATCC
BAA-2158]
Length = 93
Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 11 NLILDIPVKMTVELGRTKMTIKELLRLSQGSVVALDGLAGEPLDILINGYLIAQGEVVVV 70
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IRITD I ++ +
Sbjct: 71 SDKFGIRITDIITPSERMHR 90
>gi|332669207|ref|YP_004452215.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
gi|332338245|gb|AEE44828.1| flagellar motor switch protein FliN [Cellulomonas fimi ATCC 484]
Length = 238
Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
L S + +Q Y + + + I + ++ V+ L G V+
Sbjct: 134 LRLRSPKVATPTTSQVPTPRANLRM-LYDVEMTLTAEIGRTRLPVRQVLDLAPGAVLELD 192
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ A + NG+ + E+ V + Y IR+T+ + +
Sbjct: 193 RTAGSPADVLVNGRLVARGEVVVVDEVYGIRVTEIVAGND 232
>gi|82702482|ref|YP_412048.1| surface presentation of antigens (SPOA) protein [Nitrosospira
multiformis ATCC 25196]
gi|82410547|gb|ABB74656.1| Surface presentation of antigens (SPOA) protein [Nitrosospira
multiformis ATCC 25196]
Length = 151
Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + ++ K +K+++ L G V+ + NG I E+ V
Sbjct: 69 DLVMDIPVQLTVQLGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGYLIAQGEVVVV 128
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I ++ K
Sbjct: 129 NEKFGIRLTDIITPSERIRK 148
>gi|113969633|ref|YP_733426.1| flagellar motor switch protein [Shewanella sp. MR-4]
gi|114046863|ref|YP_737413.1| flagellar motor switch protein [Shewanella sp. MR-7]
gi|113884317|gb|ABI38369.1| flagellar motor switch protein FliN [Shewanella sp. MR-4]
gi|113888305|gb|ABI42356.1| flagellar motor switch protein FliN [Shewanella sp. MR-7]
Length = 124
Score = 75.8 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S+ S+ + V I + ++++++ L G V+
Sbjct: 24 LDELVDDSQPISKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 82
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 83 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122
>gi|311695205|gb|ADP98078.1| flagellar motor switch protein FliN-like protein [marine bacterium
HP15]
Length = 163
Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + +++++ L G VI + NG I E+ V +
Sbjct: 83 ILDIPVTISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVNE 142
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 143 KFGIRLTDVISPGERI 158
>gi|295696125|ref|YP_003589363.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
tusciae DSM 2912]
gi|295411727|gb|ADG06219.1| CheC, inhibitor of MCP methylation / FliN fusion protein [Bacillus
tusciae DSM 2912]
Length = 395
Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+++ + + ++++V++ +G V+ + N K I E+ +
Sbjct: 311 DLLLDVSLTVSVELGRTHQSVREVLSWSLGSVVELDRLAGEPVDIYVNQKLIAKGEVVVI 370
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +R+TD ++ +
Sbjct: 371 DENFGVRVTDIVHPRDRM 388
>gi|284041526|ref|YP_003391866.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
gi|283945747|gb|ADB48491.1| flagellar motor switch protein FliN [Conexibacter woesei DSM 14684]
Length = 130
Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 30/72 (41%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ + V + I + T+ + + L+ G ++ L NG I E+ +
Sbjct: 28 RLSDVPVELAVEIGRTRMTVGETLELRPGSIVVLNRMAGEPVDLLVNGTPIAHGEVVVID 87
Query: 294 KNYTIRITDRIN 305
+ + +RITD +
Sbjct: 88 EEFGLRITDVLG 99
>gi|94500288|ref|ZP_01306821.1| flagellar motor switch protein [Oceanobacter sp. RED65]
gi|94427587|gb|EAT12564.1| flagellar motor switch protein [Oceanobacter sp. RED65]
Length = 185
Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + + +++++ L G VI + NG I E+ V
Sbjct: 106 ILDIPVSISMEVGNTQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVMVND 165
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 166 KFGIRLTDVISQAERIQK 183
>gi|332524238|ref|ZP_08400464.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
gi|332107573|gb|EGJ08797.1| flagellar motor switch protein [Rubrivivax benzoatilyticus JA2]
Length = 144
Score = 75.4 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +K ++ L G V+ + NG I E+ V
Sbjct: 63 ILDIPVQLTVELGRTRIPIKHILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 122
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 123 KFGIRLTDIVTPSERM 138
>gi|291519585|emb|CBK74806.1| flagellar motor switch protein FliN [Butyrivibrio fibrisolvens
16/4]
Length = 394
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ + +PQ T + S + +++ +
Sbjct: 281 MAGQQMPPYMYMPQPT---INVQPAQFTPFGPGFSAQFAQENIDLILDVPLDVTVELGRT 337
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
T++D++ G +I + NGK + E+ + +++ +RIT+ I
Sbjct: 338 NKTIQDILDFAPGTIIELNKIAGEPIDVLVNGKYVAKGEVVVIEESFGVRITEIIKE 394
>gi|302878291|ref|YP_003846855.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
ES-2]
gi|302581080|gb|ADL55091.1| flagellar motor switch protein FliN [Gallionella capsiferriformans
ES-2]
Length = 148
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 28/78 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 66 DMILDIPVQLTVELGRTKMPIKNLLQLAQGSVVELSGMAGEPLDVMINGFLIAQGEVVVV 125
Query: 293 GKNYTIRITDRINFDQKS 310
IR+TD ++
Sbjct: 126 NDKLGIRLTDITTPSERL 143
>gi|127512305|ref|YP_001093502.1| flagellar motor switch protein [Shewanella loihica PV-4]
gi|126637600|gb|ABO23243.1| flagellar motor switch protein FliN [Shewanella loihica PV-4]
Length = 127
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 43/122 (35%)
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
E+ + + ++ L + + L S + + V I +
Sbjct: 4 EDTGDDWAAAMAEQALEEAQAVELDELADSSKPLTEEEAAKLDTIMDIPVTISMEVGRSF 63
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+++++ L G V+ + NG I E+ V + IR+TD I+ ++
Sbjct: 64 INIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123
Query: 311 LK 312
K
Sbjct: 124 KK 125
>gi|120598258|ref|YP_962832.1| flagellar motor switch protein [Shewanella sp. W3-18-1]
gi|146293664|ref|YP_001184088.1| flagellar motor switch protein [Shewanella putrefaciens CN-32]
gi|120558351|gb|ABM24278.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
gi|145565354|gb|ABP76289.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
gi|319427063|gb|ADV55137.1| flagellar motor switch protein FliN [Shewanella putrefaciens 200]
Length = 127
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
Q + + S+ S+ + V I + ++++++ L G
Sbjct: 17 QALEEANAVALDELVDDSQPISKADAAKL-DTILDIPVTISMEVGRSFISIRNLLQLNQG 75
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 76 SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125
>gi|187926921|ref|YP_001893266.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
gi|241665250|ref|YP_002983609.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
gi|187728675|gb|ACD29839.1| flagellar motor switch protein FliN [Ralstonia pickettii 12J]
gi|240867277|gb|ACS64937.1| flagellar motor switch protein FliN [Ralstonia pickettii 12D]
Length = 150
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +K+++ L G V+ + NG I E+ V
Sbjct: 68 DMILDIPVQLTVELGRTKVPIKNLLQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVV 127
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ + IR+TD I ++ K
Sbjct: 128 NEKFGIRLTDIITPSERIRK 147
>gi|109899344|ref|YP_662599.1| flagellar motor switch protein [Pseudoalteromonas atlantica T6c]
gi|109701625|gb|ABG41545.1| flagellar motor switch protein FliN [Pseudoalteromonas atlantica
T6c]
Length = 131
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + S + V I + ++++++ L G V+ +
Sbjct: 36 EEDKEISPAEKRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDV 94
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
NG I E+ V + IR+TD I+ ++ K
Sbjct: 95 LVNGTLIAHGEVVVVNDKFGIRLTDVISQLERIKK 129
>gi|85060032|ref|YP_455734.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
gi|84780552|dbj|BAE75329.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
Length = 132
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K T+K+++ L G V+ + NG I E+ V
Sbjct: 51 DLIMDIPVKMTVELGRTKMTIKELLRLAQGSVVALDGLAGEPLDILINGYLIAQGEV-VV 109
Query: 293 GKNYTIRITDRINFDQKS 310
Y +RIT I ++
Sbjct: 110 ADKYGVRITSIITPSERM 127
>gi|293115680|ref|ZP_06604568.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
2876]
gi|292808782|gb|EFF67987.1| flagellar motor switch phosphatase FliY [Butyrivibrio crossotus DSM
2876]
Length = 426
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 8/73 (10%), Positives = 30/73 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + ++K+++ G ++ + NGK + E+ +
Sbjct: 354 DLIMDVPLEVTVELGRTTKSIKEILEFAPGTIVELNKIAGEPIDVLVNGKYVAKGEVVVI 413
Query: 293 GKNYTIRITDRIN 305
+++ ++IT+ +
Sbjct: 414 EESFGVKITEIVK 426
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/190 (9%), Positives = 57/190 (30%), Gaps = 13/190 (6%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + + + ++ V+I+ + + S+ + V
Sbjct: 34 GEETLTDEQKDAIGEISNISMGTAATTLSTLLNQTVNITTPKVTYMNWQELADSYDKPCV 93
Query: 83 -FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
+ S N + V + + ++G + + + + +
Sbjct: 94 FLQISYTSGLDGNNVLVLKERDVKIITDLMMGGPGNVSDEPIGELHLSAIGEAMNQMMGS 153
Query: 142 ISAVLNQCISTTQESSPNLEDFYDID------YLKKNTNRLSNEFVTTINMNMTIEN-VA 194
+ ++ + + SP + + D++ + R ++ MTI +
Sbjct: 154 AATSMSSMLGKKIDISPPIANLVDLNDNNKKDIPEFLQKRF-----VKVSFRMTIGTLID 208
Query: 195 SSFVLIIPQE 204
S + + P +
Sbjct: 209 SEIMQLYPFD 218
>gi|218288307|ref|ZP_03492606.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius LAA1]
gi|218241666|gb|EED08839.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Alicyclobacillus acidocaldarius LAA1]
Length = 381
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%)
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + + + Y + +N+ + K +++++ L G ++
Sbjct: 278 RPAFPDFDEGATPRDARPVANLS-LLYDVPLNVTVELGRAKKLIREILELAPGSILELDK 336
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K+I E+ + +N+ +R+TD + D++
Sbjct: 337 LAGEPVDIYVNQKKIAIGEVVVIDENFGVRVTDIVQADKRI 377
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/219 (8%), Positives = 55/219 (25%), Gaps = 5/219 (2%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL 88
+ +G + + VDI+ S + F +V Q
Sbjct: 36 ADEIDVLGEIGNICFGSAATSLSSLLGRRVDITTPVVSIIPRSEVESRFPTPYVLVQVDF 95
Query: 89 -SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + ++G + + + + + ++
Sbjct: 96 TEGLQGTNALAIEIEDARRIADLMMGREPSESTGELGELELSAVGEAMNQMMGSAATAMS 155
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETL 206
Q SP + E + + + + + S + ++P
Sbjct: 156 QLFGRYINISPPSVRVVTFTPDEAQAAFGLAEELVNVEFRLHVHELIDSHIMQLMPIPFA 215
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ S Q ++ + + + R+ V+
Sbjct: 216 ---RELVRSMQVHTDAIAPEPREGDERRDGDAPVSAGAE 251
>gi|285018172|ref|YP_003375883.1| flagellar motor switch/type III secretory pathway protein flin
[Xanthomonas albilineans GPE PC73]
gi|283473390|emb|CBA15895.1| probable flagellar motor switch/type III secretory pathway protein
flin [Xanthomonas albilineans]
Length = 112
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + +++++ L G V+ + NG I E+ +
Sbjct: 33 ILDVPITLSLEVGRSRIPIRNLLQLNQGSVVELERGAGEPLDVYVNGTLIAHGEVVTIND 92
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD ++ ++
Sbjct: 93 RFGVRLTDVVSPSERI 108
>gi|332994113|gb|AEF04168.1| flagellar motor switch protein [Alteromonas sp. SN2]
Length = 133
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+++ + V I + + ++++++ L G V+ +
Sbjct: 38 TDDTPITQEEKKKL-DTILDIPVTISMEVGRSQISIRNLLQLNQGSVVELDRVAGEPLDV 96
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
NG I E+ V + IR+TD I+ ++ K
Sbjct: 97 LVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 131
>gi|24374732|ref|NP_718775.1| flagellar motor switch protein [Shewanella oneidensis MR-1]
gi|24349392|gb|AAN56219.1|AE015759_11 flagellar motor switch protein FliN [Shewanella oneidensis MR-1]
Length = 124
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S+ S+ + V I + ++++++ L G V+
Sbjct: 24 LDELVDDSQPISKAEAAKL-DTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAG 82
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 83 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122
>gi|117919798|ref|YP_868990.1| flagellar motor switch protein [Shewanella sp. ANA-3]
gi|117612130|gb|ABK47584.1| flagellar motor switch protein FliN [Shewanella sp. ANA-3]
Length = 124
Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
++S+ S+ + V I + ++++++ L G V+
Sbjct: 24 LDELVDESQPISKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 82
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 83 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 122
>gi|255021380|ref|ZP_05293428.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
gi|254969243|gb|EET26757.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
Length = 150
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VN+ + K +++++ L G V+ + NG I E+ V
Sbjct: 69 DMILDIPVNLSVELGRTKIQIRNLLQLAQGSVVELERLAGEPMDVLVNGYLIAQGEVVLV 128
Query: 293 GKNYTIRITDRINFDQK 309
+ IR+TD I+ ++
Sbjct: 129 NDKFGIRLTDIISPAER 145
>gi|88800465|ref|ZP_01116029.1| flagellar motor switch protein [Reinekea sp. MED297]
gi|88776795|gb|EAR08006.1| flagellar motor switch protein [Reinekea sp. MED297]
Length = 165
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + + +++++ L G VI + NG+ I E+ V +
Sbjct: 86 ILDIPVTISMEVGATQIPIRNLLQLNQGSVIELDRLAGEPLDVLVNGRLIAHGEVVMVNE 145
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD ++ ++
Sbjct: 146 KFGIRLTDVVSQQERV 161
>gi|224370776|ref|YP_002604940.1| FliN [Desulfobacterium autotrophicum HRM2]
gi|223693493|gb|ACN16776.1| FliN [Desulfobacterium autotrophicum HRM2]
Length = 113
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 33/99 (33%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S + + + +++ + + + D++ L G ++
Sbjct: 10 SSQHGSDDEFDHEGQQTGRELDFILDIPLDLSVELGRARMLVNDLLQLGQGSIVELNKLA 69
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K I E+ V + + +R+TD I +
Sbjct: 70 GEPLEVYINRKLIARGEVVVVNEKFGVRLTDIITPMDRV 108
>gi|294678113|ref|YP_003578728.1| surface presentation of antigens protein family [Rhodobacter
capsulatus SB 1003]
gi|294476933|gb|ADE86321.1| surface presentation of antigens protein family [Rhodobacter
capsulatus SB 1003]
Length = 418
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/282 (9%), Positives = 83/282 (29%), Gaps = 15/282 (5%)
Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
+ + K+ ++ L + S + + + + + S I
Sbjct: 30 RAIVQAVSKVAQDMFQLPAQVLQVSEGRRTLADLPEAIDPFSLIAIIEGPE-ESMGIIAL 88
Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE--SS 157
+ L+E + P + ++ + + A++ + + T+ +
Sbjct: 89 PPETLSVLIEVQTTGNLGKGPPPPRKPT-RIDASMVVDFLDTTLAMIEESLVETEAVIWA 147
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE---NVASSFVLIIPQE----TLLKTT 210
+D + L + + + + +P +L +
Sbjct: 148 GGFRYASYLDDPRPLGLLLEDMGYRLWQLEIGFGVGFERKGKLIWAVPVNGRGHSLRRLP 207
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
++ + ++ + + +D ++ L V+ L+ G IP
Sbjct: 208 GLADEGPISPDREAAEWAHRLENSVMGASAQLDAVLHRVTLPLAAVMRLRAGMDIPIPSD 267
Query: 271 EKTCAILS-ANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
+ +++ + LG+ +R+ I +++ L
Sbjct: 268 ALENLTVEGVGRRKLSAARLGQHRGLRAVRL---IEHEEEEL 306
>gi|238927452|ref|ZP_04659212.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
43531]
gi|238884734|gb|EEQ48372.1| flagellar motor switch protein FliY [Selenomonas flueggei ATCC
43531]
Length = 396
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 36/75 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + ++ + K ++K+++ L G ++ + NGK + E+ + +
Sbjct: 317 ILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGEPVDIMVNGKYLAKGEVVVIDE 376
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ ++ ++
Sbjct: 377 NFGVRITEIVSPLER 391
>gi|56551540|ref|YP_162379.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761178|ref|ZP_04759267.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752860|ref|YP_003225753.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56543114|gb|AAV89268.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374797|gb|EER64258.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552223|gb|ACV75169.1| flagellar motor switch protein FliN [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 103
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
S+ S++ + + V + + +L +++ L G V+ +
Sbjct: 4 ESTAKGSKSAKSNRTKDL-GLLSDIPVKMSLEVGSTSLSLAELLDLAEGSVVELDRQANE 62
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
+ NGK I E+ V + +RI D ++ + S+
Sbjct: 63 LLDVVVNGKLIAKGEVVTVNGRFGVRIVDVVSNENNSV 100
>gi|114562368|ref|YP_749881.1| flagellar motor switch protein [Shewanella frigidimarina NCIMB 400]
gi|114333661|gb|ABI71043.1| flagellar motor switch protein FliN [Shewanella frigidimarina NCIMB
400]
Length = 127
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
Q + + S +++ + V I + ++++++ L G
Sbjct: 17 QALEEAEHVELDELVDDSRPITKEEAAKL-DGILDIPVTISMEVGRSFISIRNLLQLNQG 75
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 76 SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125
>gi|227876754|ref|ZP_03994863.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
35243]
gi|306817701|ref|ZP_07451443.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
35239]
gi|227842651|gb|EEJ52851.1| flagellar motor switch protein FliN [Mobiluncus mulieris ATCC
35243]
gi|304649515|gb|EFM46798.1| flagellar motor switch phosphatase FliY [Mobiluncus mulieris ATCC
35239]
Length = 248
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + + + + Y + + + I K + DV+ L G VI
Sbjct: 146 ESATTPPASQASATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 205
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ A + NG+ I E+ V + Y IRIT+ ++ ++ +
Sbjct: 206 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNRQ 248
>gi|294140211|ref|YP_003556189.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
gi|293326680|dbj|BAJ01411.1| flagellar motor switch protein FliN [Shewanella violacea DSS12]
Length = 127
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + ++++++ L G V+ + NG I E+ V
Sbjct: 46 DTIMDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVV 105
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 106 NDKFGIRLTDVISQTERIKK 125
>gi|255022968|ref|ZP_05294954.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J1-208]
Length = 115
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 40/103 (38%)
Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDV 256
+ +P ++ + + + ++ + ++ +Q+ R+ KTT K++
Sbjct: 1 MRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKEL 60
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
L++G V+ + K + C +G+ G ++
Sbjct: 61 NKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVK 103
>gi|302343740|ref|YP_003808269.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
2075]
gi|301640353|gb|ADK85675.1| flagellar motor switch protein FliN [Desulfarculus baarsii DSM
2075]
Length = 117
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + D++ L G V+ + N K I E+ V +
Sbjct: 38 ILDIPLEVTVELGRTSMLINDLLQLGQGSVVELNKLAGEPLEILVNRKLIARGEVVVVNE 97
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD ++ ++
Sbjct: 98 KFGVRLTDIVSPIERV 113
>gi|157376190|ref|YP_001474790.1| flagellar motor switch protein [Shewanella sediminis HAW-EB3]
gi|157318564|gb|ABV37662.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
Length = 127
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 44/122 (36%)
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
E+ + + ++ + + + L + + + V I +
Sbjct: 4 EDTGDDWAEAMAEQAIEEAQAVELDELTDTAAALSEEDVAKLDSIMDIPVTISMEVGRSF 63
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
++++++ L G V+ + NG I E+ V + IR+TD I+ ++
Sbjct: 64 ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI 123
Query: 311 LK 312
K
Sbjct: 124 KK 125
>gi|298530626|ref|ZP_07018028.1| flagellar motor switch protein FliN [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510000|gb|EFI33904.1| flagellar motor switch protein FliN [Desulfonatronospira
thiodismutans ASO3-1]
Length = 187
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + ++ + + +++ L G VI + NGK + E + +
Sbjct: 108 ILDIPLTVTAQLGGTQLLINELLQLGQGSVIELNKLAGEPMEVLVNGKLVARGEAVVINE 167
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD I+ ++
Sbjct: 168 KFGIRLTDIISPVERI 183
>gi|126175120|ref|YP_001051269.1| flagellar motor switch protein [Shewanella baltica OS155]
gi|153001444|ref|YP_001367125.1| flagellar motor switch protein [Shewanella baltica OS185]
gi|160876169|ref|YP_001555485.1| flagellar motor switch protein [Shewanella baltica OS195]
gi|217972624|ref|YP_002357375.1| flagellar motor switch protein [Shewanella baltica OS223]
gi|304409951|ref|ZP_07391570.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|307302336|ref|ZP_07582094.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|125998325|gb|ABN62400.1| flagellar motor switch protein FliN [Shewanella baltica OS155]
gi|151366062|gb|ABS09062.1| flagellar motor switch protein FliN [Shewanella baltica OS185]
gi|160861691|gb|ABX50225.1| flagellar motor switch protein FliN [Shewanella baltica OS195]
gi|217497759|gb|ACK45952.1| flagellar motor switch protein FliN [Shewanella baltica OS223]
gi|304351360|gb|EFM15759.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|306914374|gb|EFN44795.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|315268365|gb|ADT95218.1| flagellar motor switch protein FliN [Shewanella baltica OS678]
Length = 126
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S ++ + V I + ++++++ L G V+
Sbjct: 26 LDELVDDSRPITKAEAAKL-DTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVAG 84
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 85 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 124
>gi|91792692|ref|YP_562343.1| flagellar motor switch protein [Shewanella denitrificans OS217]
gi|91714694|gb|ABE54620.1| Flagellar motor switch FliN [Shewanella denitrificans OS217]
Length = 127
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 1/110 (0%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
Q + + S +++ + V I + ++++++ L G
Sbjct: 17 QAIEEAQQIELDELVDDSRPITKEEAAKL-DSILDIPVTISMEVGRSFISIRNLLQLNQG 75
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 76 SVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125
>gi|239628981|ref|ZP_04672012.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519127|gb|EEQ58993.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 368
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +N+ I + LKDV+ G V+ + + NG+ I E+ +
Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFNNGTVVELDKQADAPVDIIVNGQLIARGEVVVIDD 348
Query: 295 NYTIRITDRINF 306
N+ +RIT+ +N
Sbjct: 349 NFGVRITEIVNT 360
>gi|16078695|ref|NP_389514.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309510|ref|ZP_03591357.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221313834|ref|ZP_03595639.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221318757|ref|ZP_03600051.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323029|ref|ZP_03604323.1| flagellar motor switch protein [Bacillus subtilis subsp. subtilis
str. SMY]
gi|585146|sp|P24073|FLIY_BACSU RecName: Full=Flagellar motor switch phosphatase FliY; AltName:
Full=CheY-P phosphatase FliY; AltName: Full=Flagellar
motor switch protein FliY
gi|142926|gb|AAA22449.1| fliY [Bacillus subtilis]
gi|2634004|emb|CAB13505.1| flagellar motor switching and energizing phosphatase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 378
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 2/194 (1%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
+G + ++ VDI+ S S I +F E +
Sbjct: 39 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGF 98
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
S + + + + + ++G + + ++ + + + ++ S
Sbjct: 99 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
+ SP + D+ K +E + ++ N+ + + SS + + P
Sbjct: 159 KKIDISPPRVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218
Query: 211 LISLSSQNKSENQS 224
++S++ E ++
Sbjct: 219 SSLMNSESAEEEET 232
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 35/78 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + K ++K+++ L G +I + N + + E+ +
Sbjct: 297 DMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVI 356
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +R+TD ++ ++
Sbjct: 357 EENFGVRVTDILSQAERI 374
>gi|321315399|ref|YP_004207686.1| flagellar motor switch protein [Bacillus subtilis BSn5]
gi|291484185|dbj|BAI85260.1| flagellar motor switch protein [Bacillus subtilis subsp. natto
BEST195]
gi|320021673|gb|ADV96659.1| flagellar motor switch protein [Bacillus subtilis BSn5]
Length = 378
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 64/194 (32%), Gaps = 2/194 (1%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN-FVFSQASLSSW 91
+G + ++ VDI+ S S I +F E +
Sbjct: 39 DAIGEIGNISFGSSATALSTLLNQKVDITTPSVTVIPRSKISDAFPEPYVAIEVNYTEGF 98
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
S + + + + + ++G + + ++ + + + ++ S
Sbjct: 99 SGSNLLVVEQSDAAIIADLMIGGDGKGADPSLGEIHLSAVQEAMNQMMGSAATSMSTVFS 158
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQETLLKTT 210
+ SP + D+ K +E + ++ N+ + + SS + + P
Sbjct: 159 KKIDISPPRVELLDVTEEKGTDRIPDDEMLVKVSFNLKVGELIDSSIMQLYPLTFAKDLI 218
Query: 211 LISLSSQNKSENQS 224
++S++ E ++
Sbjct: 219 SSLMNSESAEEEET 232
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 35/78 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + K ++K+++ L G +I + N + + E+ +
Sbjct: 297 DMLLDIPLSITVELGRTKRSVKEILELSAGSIIELDKLAGEPVDILVNQRIVAKGEVVVI 356
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +R+TD ++ ++
Sbjct: 357 EENFGVRVTDILSQAERI 374
>gi|149184185|ref|ZP_01862503.1| hypothetical protein ED21_25743 [Erythrobacter sp. SD-21]
gi|148831505|gb|EDL49938.1| hypothetical protein ED21_25743 [Erythrobacter sp. SD-21]
Length = 298
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/286 (11%), Positives = 80/286 (27%), Gaps = 10/286 (3%)
Query: 19 ARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSF 77
L + ++ + + + E D + S + +
Sbjct: 18 DELLSRAATPPELDIEFARFVSGFAENAQLQLAELCDDRGIATSVVATELLPVGDWYEQM 77
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
S SL S + ++ E +LG S E +L L + A +
Sbjct: 78 GNARRHSYFSLGQESRGILVSVGIGELVAQFERILGGSGEVDERLG--ILPASAARFAHQ 135
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
++ + + S +E S + D + TI ++ + +
Sbjct: 136 FDDRVCEAMRRT-SDRREISASAIGDEAEDVAPFA--LGEKVWTATIAISSSKSDRPWQV 192
Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
L Q + + + + + ++ +++ + + ++ +
Sbjct: 193 RLAACQSMIAELVEKRAA--SPATGRTIGARGIGGSAIADVDLPLRAVLVDVPMSIARLA 250
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+L+ G VI L I +G + + +T
Sbjct: 251 SLEPGAVI--QVAVNRSVPLQIGQLTIAHGCVGELDDRVALELTHT 294
>gi|145298354|ref|YP_001141195.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851126|gb|ABO89447.1| polar flagellar switch protein FliN [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 121
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + L S + + V I + + ++++++ L
Sbjct: 8 ALEEQVIAEAKPAPLEELTDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQL 66
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 67 NQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 119
>gi|325273550|ref|ZP_08139780.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
gi|324101310|gb|EGB98926.1| flagellar motor switch protein [Pseudomonas sp. TJI-51]
Length = 82
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ VNI + + +++++ L G VI + NG I E+ V +
Sbjct: 3 ILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE 62
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 63 KFGIRLTDVISPSERIKK 80
>gi|160896095|ref|YP_001561677.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
gi|160361679|gb|ABX33292.1| flagellar motor switch protein FliN [Delftia acidovorans SPH-1]
Length = 143
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +K ++ L G V+ + NG I E+ V
Sbjct: 62 VLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVND 121
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 122 KFGIRLTDVVTPSERL 137
>gi|317133476|ref|YP_004092790.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Ethanoligenens harbinense YUAN-3]
gi|315471455|gb|ADU28059.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Ethanoligenens harbinense YUAN-3]
Length = 374
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 34/75 (45%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ +++ + + +++++ +G +I + + NG+ I E+ +
Sbjct: 297 ELIQEVPLDLSVEVGRSRKLVREILDFAVGSIIELDKQAGDPVDIIVNGQLIAQGEVVVI 356
Query: 293 GKNYTIRITDRINFD 307
+N+ +RIT+ I
Sbjct: 357 DENFGVRITEIIGKQ 371
>gi|88858100|ref|ZP_01132742.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
gi|88819717|gb|EAR29530.1| flagellar motor switch protein [Pseudoalteromonas tunicata D2]
Length = 131
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
N+ +++ + V I + K ++++++ L G V+
Sbjct: 31 LEELSNQPAEITQEEKRKL-DTILDIPVTISMEVGRSKISIRNLLQLNQGSVVELDRVAG 89
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 90 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 129
>gi|49184600|ref|YP_027852.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|65319043|ref|ZP_00392002.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str.
A2012]
gi|227815465|ref|YP_002815474.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. CDC 684]
gi|254683264|ref|ZP_05147125.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. CNEVA-9066]
gi|254734617|ref|ZP_05192329.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. Western North America USA6153]
gi|254741026|ref|ZP_05198714.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. Kruger B]
gi|254755269|ref|ZP_05207303.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. Vollum]
gi|254759805|ref|ZP_05211829.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. Australia 94]
gi|49178527|gb|AAT53903.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|227004068|gb|ACP13811.1| putative flagellar motor switch protein FliM [Bacillus anthracis
str. CDC 684]
Length = 200
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 4/139 (2%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKF-SHIIHSFK-ENFVFSQAS 87
+ ++ + K + +M + +++ ++ + F S + + +++
Sbjct: 51 EHLRSLQAIASTFGKQTSQTLSARMRIPIELEPSTVEQVPFTSEYVEKMPKDYYLYCVID 110
Query: 88 LS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
L I VI + E LG + R L+ E + L
Sbjct: 111 LGLPELGEIVIEIDLAFVIYIHECWLGGDSKR-NFTMRRPLTAFEFLTLDNIFMLLCKNL 169
Query: 147 NQCISTTQESSPNLEDFYD 165
Q + P
Sbjct: 170 EQSFESVVAIEPKFVTTER 188
>gi|195941369|ref|ZP_03086751.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi 80a]
gi|226320578|ref|ZP_03796138.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
gi|226233997|gb|EEH32718.1| flagellar switch protein FliY [Borrelia burgdorferi 29805]
gi|312148035|gb|ADQ30694.1| flagellar switch protein FliY [Borrelia burgdorferi JD1]
Length = 113
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 99 NFGVRITEIIKTKNE 113
>gi|85058023|ref|YP_453725.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
gi|84778543|dbj|BAE73320.1| flagellar motor switch protein FliN [Sodalis glossinidius str.
'morsitans']
Length = 134
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 33/76 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + T+++++ L V+P + + NG I E+ +G+
Sbjct: 54 ILDIPVKMTVELGRTRMTIRELLHLSQDAVVPLEGQAGEPLDILINGYLIARGEVVVMGE 113
Query: 295 NYTIRITDRINFDQKS 310
Y +RI D + ++
Sbjct: 114 QYGVRIADIVTPAERM 129
>gi|195952554|ref|YP_002120844.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
gi|195932166|gb|ACG56866.1| flagellar motor switch protein FliN [Hydrogenobaculum sp. Y04AAS1]
Length = 149
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ + ++I I T+K+++ L+ G V+ + + ANGK I EL V
Sbjct: 66 QRILDIPLSITVVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVV 125
Query: 293 GKNYTIRITDRINFDQKS 310
G+N+ IRI + I +++
Sbjct: 126 GENFGIRIAEIIEKEERV 143
>gi|332305667|ref|YP_004433518.1| flagellar motor switch protein FliN [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172996|gb|AEE22250.1| flagellar motor switch protein FliN [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 131
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ ++ + + V I + ++++++ L G V+ +
Sbjct: 36 EEDKDITPAEKRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRVAGEPLDV 94
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
NG I E+ V + IR+TD I+ ++ K
Sbjct: 95 LVNGTLIAHGEVVVVNDKFGIRLTDVISQLERIKK 129
>gi|107025883|ref|YP_623394.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia AU 1054]
gi|116692933|ref|YP_838466.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia HI2424]
gi|170737802|ref|YP_001779062.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
gi|105895257|gb|ABF78421.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia AU 1054]
gi|116650933|gb|ABK11573.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia HI2424]
gi|169819990|gb|ACA94572.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
Length = 384
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/297 (12%), Positives = 71/297 (23%), Gaps = 31/297 (10%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
+ P+ A D I ++L L + + V++ H
Sbjct: 101 IDPLAEAEWLADAADPAVPAVIRAALLADLCAPLTAVLQAATRQRVEL-LPPPDGVPAWH 159
Query: 73 IIHSFKENFVFSQASLSS----WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
L W + + + + A+ Y
Sbjct: 160 A-----SPAALR-FELRRADATWRCHGALLFDAPDALAVFFAAAPAALADARAAYANLP- 212
Query: 129 TVEKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
L +E + + RL I
Sbjct: 213 ------VPLVFEIGRTELTTAELADVVGGDIIAIERWQAHEQNLLCVARLPAAPAWEITG 266
Query: 187 NMTIENVASSFVLIIPQETLLKTT-LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ + + +P L T + + + + R L V++
Sbjct: 267 RPSGNRLTVERIREMP---LEPTRTDSAPPTTHDAPPAD------VPRSLDGLAVDLRFE 317
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
+ L ++ L+ G VI L ANG I + L VG+ +R+
Sbjct: 318 LPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 374
>gi|116626505|ref|YP_828661.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
Ellin6076]
gi|116229667|gb|ABJ88376.1| flagellar motor switch protein FliN [Candidatus Solibacter usitatus
Ellin6076]
Length = 282
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + + + +KDV+ L G ++ + N I E+
Sbjct: 200 MELLLDVELPVSISFGKTEILMKDVLKLTTGSIVELNRGVNEPVEVLVNHCLIARGEVVV 259
Query: 292 VGKNYTIRITDRINFDQKSLKNFL 315
V NY +RI +N Q L++
Sbjct: 260 VEGNYGVRIQQIVNR-QDRLRSIR 282
>gi|262273546|ref|ZP_06051360.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
gi|262222524|gb|EEY73835.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
Length = 116
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ VN+ + + + D++ + +G VI + NG + E+ V
Sbjct: 36 IRNIPVNLTLEVASTELKVGDLMNINVGSVIELDKLSGEPMDVRVNGTLLGHAEVVVVNN 95
Query: 295 NYTIRITDRINFDQKSLKNFLH 316
Y +R+ + ++ ++ L+ +
Sbjct: 96 KYGLRLVNVVD-EKDMLRGLAN 116
>gi|34498584|ref|NP_902799.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
gi|34104438|gb|AAQ60796.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
Length = 147
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + K +++++ L G V+ + NG I E+ V
Sbjct: 65 DMILDIPVQLTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVV 124
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD I ++
Sbjct: 125 NDKFGIRLTDIITPAERI 142
>gi|74055042|gb|AAZ95847.1| FliN [Aeromonas hydrophila]
Length = 130
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 1/113 (0%)
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + L S + + V I + + ++++++ L
Sbjct: 17 ALEEQVIAEAKPAPLEELTDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQL 75
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 76 NQGSVVELDRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128
>gi|83589657|ref|YP_429666.1| flagellar motor switch protein [Moorella thermoacetica ATCC 39073]
gi|83572571|gb|ABC19123.1| CheC, inhibitor of MCP methylation [Moorella thermoacetica ATCC
39073]
Length = 395
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I+ + ++D+++L G ++ + ++ NG I E+ V
Sbjct: 313 DLILDVPLDIEVILGTAMKRIQDILSLAPGAIVELDRLVEEPVQITVNGTPIAQGEVVIV 372
Query: 293 GKNYTIRITDRINFDQKSLKNFLH 316
+N+ +RIT + ++ + +
Sbjct: 373 NENFGVRITHILEPYER-INHLRQ 395
>gi|262276387|ref|ZP_06054196.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
gi|262220195|gb|EEY71511.1| flagellar motor switch protein FliN [Grimontia hollisae CIP 101886]
Length = 129
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+++ + D + V I + +++++ L G V+
Sbjct: 29 LDELVDETPPINADEARKL-DAILDIPVTISMEVGRTNINIRNLLQLNQGSVVELDRLAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 ESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|315127311|ref|YP_004069314.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
gi|315015825|gb|ADT69163.1| flagellar motor switch protein [Pseudoalteromonas sp. SM9913]
Length = 132
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ S + + V I + K +++++ L G V+
Sbjct: 32 LDELDDSKHELSGEEKRKL-DTILDIPVTISMEVGRSKINIRNLLQLNQGSVVELDRVAG 90
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 91 EPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQVERIKK 130
>gi|311992319|gb|ADQ26733.1| flagellar motor switch protein [Aeromonas hydrophila]
Length = 129
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ L S + + V I + + ++++++ L G V+
Sbjct: 24 EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 82
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 83 DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 127
>gi|224826625|ref|ZP_03699726.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
gi|224601226|gb|EEG07408.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
Length = 143
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 30/78 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + +++++ L G V+ + NG I E+ V
Sbjct: 61 DMILDIPVQLTVELGRTRIAIRNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVV 120
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD I ++
Sbjct: 121 NDKFGIRLTDIITPAERI 138
>gi|15594622|ref|NP_212411.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
gi|216264293|ref|ZP_03436285.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
gi|218249886|ref|YP_002374800.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
gi|221217725|ref|ZP_03589193.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
gi|223888953|ref|ZP_03623544.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
gi|224533125|ref|ZP_03673725.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
gi|224533729|ref|ZP_03674317.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
gi|225549081|ref|ZP_03770056.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
gi|225550166|ref|ZP_03771126.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
gi|225552071|ref|ZP_03773011.1| flagellar switch protein FliY [Borrelia sp. SV1]
gi|226321595|ref|ZP_03797121.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
gi|2494553|sp|Q44903|FLIN_BORBU RecName: Full=Flagellar motor switch protein FliN
gi|1165262|gb|AAA85601.1| FliN [Borrelia burgdorferi]
gi|1185057|gb|AAB58966.1| switch protein [Borrelia burgdorferi]
gi|2688189|gb|AAC66671.1| flagellar motor switch protein (fliN) [Borrelia burgdorferi B31]
gi|215980766|gb|EEC21573.1| flagellar switch protein FliY [Borrelia burgdorferi 156a]
gi|218165074|gb|ACK75135.1| flagellar switch protein FliY [Borrelia burgdorferi ZS7]
gi|221192402|gb|EEE18621.1| flagellar switch protein FliY [Borrelia burgdorferi 72a]
gi|223885769|gb|EEF56868.1| flagellar switch protein FliY [Borrelia burgdorferi 64b]
gi|224511852|gb|EEF82253.1| flagellar switch protein FliY [Borrelia burgdorferi WI91-23]
gi|224513022|gb|EEF83385.1| flagellar switch protein FliY [Borrelia burgdorferi CA-11.2a]
gi|225369278|gb|EEG98731.1| flagellar switch protein FliY [Borrelia burgdorferi 118a]
gi|225370307|gb|EEG99745.1| flagellar switch protein FliY [Borrelia burgdorferi 94a]
gi|225371069|gb|EEH00499.1| flagellar switch protein FliY [Borrelia sp. SV1]
gi|226232784|gb|EEH31537.1| flagellar switch protein FliY [Borrelia burgdorferi Bol26]
gi|312149461|gb|ADQ29532.1| flagellar switch protein FliY [Borrelia burgdorferi N40]
Length = 113
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 98
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 99 NFGVRITEIIKTKNE 113
>gi|149178716|ref|ZP_01857299.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
gi|148842414|gb|EDL56794.1| flagellar motor switch protein fliN [Planctomyces maris DSM 8797]
Length = 226
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 34/73 (46%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ + + +++V+ +K G V+P + NG+ I E+ +
Sbjct: 153 LQNVELDLCIELGRTELLIEEVLKMKEGVVVPLDKLAGDPVDILVNGRIIARGEVLVLND 212
Query: 295 NYTIRITDRINFD 307
N+ +R+ + I+ +
Sbjct: 213 NFCVRVAEIISPE 225
>gi|307699993|ref|ZP_07637044.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
gi|307615031|gb|EFN94249.1| flagellar motor switch protein FliN [Mobiluncus mulieris FB024-16]
Length = 248
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 41/103 (39%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + + + Y + + + I K + DV+ L G VI
Sbjct: 146 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 205
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ A + NG+ I E+ V + Y IRIT+ ++ ++ +
Sbjct: 206 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAEQQNRQ 248
>gi|51598537|ref|YP_072725.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219684645|ref|ZP_03539588.1| flagellar switch protein FliY [Borrelia garinii PBr]
gi|219685764|ref|ZP_03540575.1| flagellar switch protein FliY [Borrelia garinii Far04]
gi|51573108|gb|AAU07133.1| flagellar motor switch protein [Borrelia garinii PBi]
gi|219672007|gb|EED29061.1| flagellar switch protein FliY [Borrelia garinii PBr]
gi|219672703|gb|EED29731.1| flagellar switch protein FliY [Borrelia garinii Far04]
Length = 113
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 99 NFGVRITEIIKTKNE 113
>gi|149200771|ref|ZP_01877746.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
gi|149145104|gb|EDM33130.1| Flagellar motor switch FliN protein [Roseovarius sp. TM1035]
Length = 102
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V++ + + TL+D++ L G V+ + NG I E+ VG+
Sbjct: 24 LANVRVSMTVEVGNTQITLQDLLRLNEGSVVELDRMAGDPLDILVNGTPIAKGEVVVVGE 83
Query: 295 NYTIRITDRINFDQKS 310
+ IR D ++ Q+
Sbjct: 84 KFGIRFGDIVDPRQRI 99
>gi|296124301|ref|YP_003632079.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
3776]
gi|296016641|gb|ADG69880.1| flagellar motor switch protein FliN [Planctomyces limnophilus DSM
3776]
Length = 189
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 32/75 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + + + +V+ L+ G V+P + NGK + E+ +
Sbjct: 114 DALQDVELDIRIELGRTELLIDEVMQLREGAVVPLDKLAGDPVDILVNGKLLARGEVLVL 173
Query: 293 GKNYTIRITDRINFD 307
N+ +RI + + D
Sbjct: 174 NDNFCVRIAEILTQD 188
>gi|323341355|ref|ZP_08081599.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
25644]
gi|323091232|gb|EFZ33860.1| flagellar motor switch phosphatase FliY [Lactobacillus ruminis ATCC
25644]
Length = 409
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 35/78 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +N+ + K +++++++ G VI + NGK I E+ +
Sbjct: 328 DLLMDIPLNLSVVLGTSKKSVREILSFNTGSVIELEKLTDEPLDILLNGKLIAQGEVVVI 387
Query: 293 GKNYTIRITDRINFDQKS 310
N+ +RIT+ ++ Q+
Sbjct: 388 NDNFGVRITNILSQSQRI 405
>gi|134294004|ref|YP_001117740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
vietnamiensis G4]
gi|134137161|gb|ABO58275.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
vietnamiensis G4]
Length = 392
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/291 (12%), Positives = 74/291 (25%), Gaps = 19/291 (6%)
Query: 13 LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH 72
L P+ G D I ++L L + + V++ S
Sbjct: 109 LDPLAETEWLGDAADPAVPAVIRTALLADLAAPLAAVLQAATRQRVEL-LPPPASVPAW- 166
Query: 73 IIHSFKENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
+ F W + + + + A + + +++
Sbjct: 167 --RTAPAALRFELRRADGAWRCHGALLFDAPDALAV----FFAQPAPARPAPHAAYASLP 220
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
L +E + + R+ I +
Sbjct: 221 VPLVFEVGRTELTTAELA-DVVGGDIIAIERWRAHEQNLLCVARVPATPAWEITGRPSGT 279
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+ + +P L T + + + R L V++ +
Sbjct: 280 RLTVERIREMP---LEPTRTDTPPATAHDAPPDDA-----PRSLDGLAVDLRFELPPTSI 331
Query: 252 TLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ++ L+ G VI L ANG I + L VG+ +R+
Sbjct: 332 PLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 382
>gi|313905142|ref|ZP_07838511.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Eubacterium cellulosolvens 6]
gi|313470045|gb|EFR65378.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Eubacterium cellulosolvens 6]
Length = 578
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 39/96 (40%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S Q + +D ++ + I + + +KD++ L G ++
Sbjct: 477 SLKSPQYTDVPDGGEEVDDNREMLMKVPMEISVEVGRTRKPIKDILELTQGSLVVLDKMA 536
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
A L NG+ I ++ V N+ IRIT+ +N D
Sbjct: 537 GEQADLYVNGECIAHGDIVVVEDNFGIRITEILNKD 572
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 22/220 (10%), Positives = 65/220 (29%), Gaps = 10/220 (4%)
Query: 26 GDKKTIEKISSSLGYLYKKFL---PKIFKEKMDLDVDISYTSCQSGKFSHII-HSFKENF 81
GD E ++G + L + +I+ S + +
Sbjct: 2 GDTVFNEMELDAIGEIMNISLGASATAVSTMLGTSTNITTPKVSVQSRSEFVFKEIEPAV 61
Query: 82 VFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
+ S I S V ++ ++G + + +++ + +
Sbjct: 62 GVEIQYVEGLSGKNVIMFSREDVRIIVGMMMGMEIPPEEFELDEMNQSAIREVMNQMMGS 121
Query: 142 ISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASS----- 196
+ L++ + + S + + + K+ ++ + ++ I + SS
Sbjct: 122 SATALSEFLGYRVDISTPVSFEIANEKVFKDKYFSDDKQEVVVRFSLEIGDELSSEFLNI 181
Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLID-PFARKT 235
L + ++ L + + S + + P +
Sbjct: 182 MSLDLVKKLLEPYADTFSGTGDGSSVTAPGAREIPLEDEV 221
>gi|150390472|ref|YP_001320521.1| flagellar motor switch protein [Alkaliphilus metalliredigens QYMF]
gi|149950334|gb|ABR48862.1| CheC, inhibitor of MCP methylation [Alkaliphilus metalliredigens
QYMF]
Length = 393
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 1/111 (0%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P K + + Q+ + + L + A + +++ + + +V+
Sbjct: 283 PSLENSKINVQPVQFQSFDQQSNRGLPENIA-LIQDVPLSVTVELGRTVKKISEVLEFGP 341
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G +I + NG+ + E+ + +NY IRITD + ++ K
Sbjct: 342 GTIIELEKVVGEPLDILVNGQYVAKGEVVVIDENYGIRITDIVAPAKRLSK 392
>gi|269976281|ref|ZP_06183277.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
gi|269935610|gb|EEZ92148.1| flagellar motor switch protein FliN [Mobiluncus mulieris 28-1]
Length = 254
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 39/98 (39%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + + + Y + + + I K + DV+ L G VI
Sbjct: 152 ESATTPPASQATATAEQRAESMKLLYDVEMTLTAEIGRTKLAVHDVLDLSPGSVIELDRS 211
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ A + NG+ I E+ V + Y IRIT+ ++ +
Sbjct: 212 AGSAADVMVNGRLIAHGEIVVVDEEYGIRITEIVSLAE 249
>gi|117618193|ref|YP_855912.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559600|gb|ABK36548.1| flagellar motor switch protein FliN [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 130
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ L S + + V I + + ++++++ L G V+
Sbjct: 25 EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 83
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128
>gi|59712451|ref|YP_205227.1| flagellar motor switch protein [Vibrio fischeri ES114]
gi|197335660|ref|YP_002156670.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
gi|59480552|gb|AAW86339.1| flagellar motor switch component FliN [Vibrio fischeri ES114]
gi|197317150|gb|ACH66597.1| flagellar motor switch phosphatase FliY [Vibrio fischeri MJ11]
Length = 129
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ K+ +ED + V I + ++++++ L G V+
Sbjct: 29 LEDLEEKAPEFNEDERRKL-DTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAG 87
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 88 ESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 127
>gi|85711034|ref|ZP_01042094.1| flagellar motor switch protein [Idiomarina baltica OS145]
gi|85694947|gb|EAQ32885.1| flagellar motor switch protein [Idiomarina baltica OS145]
Length = 140
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + + ++++++ L G V+ + NG I E+ V
Sbjct: 59 DAILDIPVTISMEVGRSQISIRNLLQLNQGSVVELERVAGEPLDVLVNGTLIAHGEVVVV 118
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD I+ ++ K
Sbjct: 119 NDKFGIRLTDVISQIERIRK 138
>gi|325109025|ref|YP_004270093.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
5305]
gi|324969293|gb|ADY60071.1| flagellar motor switch protein FliN [Planctomyces brasiliensis DSM
5305]
Length = 227
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 33/76 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + +++VV+LK G V+P + NG+ I E+ +
Sbjct: 152 EMLQDVELDLRIELGRADLLIEEVVSLKTGSVVPLDKLAGDPVDILVNGRLIARGEVLVL 211
Query: 293 GKNYTIRITDRINFDQ 308
N+ +R+ + + +
Sbjct: 212 NDNFCVRVAEILTPKE 227
>gi|220913719|ref|YP_002489028.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
A6]
gi|219860597|gb|ACL40939.1| flagellar motor switch protein FliN [Arthrobacter chlorophenolicus
A6]
Length = 238
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ I + +++D + L+ G+VI A + NG+ I E+ V +
Sbjct: 162 ISNVEMSLTVEIGRTRMSVRDALALEPGKVIELDRSAGAPADVLLNGRLIAHGEVVVVDQ 221
Query: 295 NYTIRITDRINFDQ 308
+Y +RIT ++ +
Sbjct: 222 DYAVRITRILDTAE 235
>gi|111115102|ref|YP_709720.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|216263845|ref|ZP_03435839.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
gi|110890376|gb|ABH01544.1| flagellar motor switch protein [Borrelia afzelii PKo]
gi|215979889|gb|EEC20711.1| flagellar switch protein FliY [Borrelia afzelii ACA-1]
Length = 113
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 99 NFGVRITEIIKTKNE 113
>gi|330828807|ref|YP_004391759.1| flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
gi|328803943|gb|AEB49142.1| Flagellar motor switch phosphatase FliY [Aeromonas veronii B565]
Length = 130
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ L S + + V I + + ++++++ L G V+
Sbjct: 25 EAKPAPLEELKDDAPISAEERRKL-DTILDIPVTIAMEVGRSQISIRNLLQLNQGSVVEL 83
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 DRVAGEPLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQIERIKK 128
>gi|323493118|ref|ZP_08098249.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
20546]
gi|323312589|gb|EGA65722.1| putative flagellar motor switch protein [Vibrio brasiliensis LMG
20546]
Length = 272
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/286 (13%), Positives = 97/286 (33%), Gaps = 42/286 (14%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMD-LDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
I SL L + + ++ S + FS+ + ++N +
Sbjct: 25 HVIRDKLESLISSSCNNLTFQLQSWLKSCRIETSVNAVSLHSFSN--NEMEKNATSTFQH 82
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL- 146
+ F+ C +I L + GAS + ++LS + +L R Q++ L
Sbjct: 83 --NAGGKVFVHCDKATLIKLADCFYGASIDR----AEQNLSNSDLRLQDRIGQQVTQWLA 136
Query: 147 -NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET 205
+ + E + +++ +++ S + + ++
Sbjct: 137 PQEMWAN-GEFELAFGTGLY------------------VKIDIQLDDHCGSLHIKLDEQL 177
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ T +E L D F + V ++ ++ K+ L D+++L+ ++
Sbjct: 178 VNTLTEQL------DLQPNESLYDSFCQSLAATPVKLNVLLSQKRMPLSDLLSLQANDIL 231
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
P + +S + +++ + + IN D++ L
Sbjct: 232 PIELL--STVPVSIGDQHLFNGSVAEKEGQLVL----IINHDKEPL 271
>gi|206890622|ref|YP_002249867.1| flagellar motor switch protein FliN [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742560|gb|ACI21617.1| flagellar motor switch protein FliN [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 139
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + I + +++++ L G V+ + NGK + E+ V +
Sbjct: 60 ILDIPLELVVVIGRTRILVQELLQLTQGSVVALDKLAGEPMEVYVNGKLVGRGEVVVVNE 119
Query: 295 NYTIRITDRINFDQKS 310
+ IRITD I+ ++
Sbjct: 120 KFGIRITDIISPQERV 135
>gi|78485772|ref|YP_391697.1| Type III secretion system outer membrane O protein [Thiomicrospira
crunogena XCL-2]
gi|78364058|gb|ABB42023.1| Flagellar motor switch protein FliN [Thiomicrospira crunogena
XCL-2]
Length = 153
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + I K +++++++ G VI L NG I E+ +
Sbjct: 74 LLDIPVTLQLEIGRAKVSIRNLLSYTQGSVIEMDRLAGEPLDLLVNGTLIAHGEVVVIND 133
Query: 295 NYTIRITDRINFDQKSLK 312
+ +R+TD ++ ++ K
Sbjct: 134 KFGVRLTDVVSPQERIKK 151
>gi|330447939|ref|ZP_08311587.1| surface presentation of antigens family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328492130|dbj|GAA06084.1| surface presentation of antigens family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 255
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 89/287 (31%), Gaps = 44/287 (15%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKM--------DLDVDISYTSCQSGKFSHIIHSFKENFV 82
+ K ++ L + E + IS + ++
Sbjct: 4 LGKPIHTIKDELTNILNRSLTELTDQIQKWIKSTEFTISIVNIDFQSPQQ-----GQHSA 58
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
+ CS L+I+L + + + + ++ L+ + +L +R
Sbjct: 59 LTLKH--DDGGMINFRCSAPLLISLSDRFYNSPVSRLNSVKSQVLTASDFRLQQRLGHLF 116
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP 202
++V+ ED ++ + + I ++++ E+ + + I
Sbjct: 117 ASVIAP------------EDMWNECDNSLS-----GDIGLVIQLDVSCEDTLGTITICID 159
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ T + + N + F ++ V ++T + K+ L V+ LK G
Sbjct: 160 SCLIQTLTTVIGLQPIDNIN------EQFTKQLESTKVVLNTILCEKQMPLDQVLQLKPG 213
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
V + + + + +++ + + IN +
Sbjct: 214 DVFDIDLIQSSPISI--GQEHLFNGHVAEQNGQLVL----IINTSKD 254
>gi|224531833|ref|ZP_03672465.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
gi|224534427|ref|ZP_03675005.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
gi|224511298|gb|EEF81704.1| flagellar switch protein FliY [Borrelia valaisiana VS116]
gi|224514529|gb|EEF84845.1| flagellar switch protein FliY [Borrelia spielmanii A14S]
Length = 113
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 39 LMDVSMQLTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKIVARGEVVVIDE 98
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 99 NFGVRITEIIKTKNE 113
>gi|319944170|ref|ZP_08018446.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
51599]
gi|319742465|gb|EFV94876.1| flagellar motor switch protein FliN [Lautropia mirabilis ATCC
51599]
Length = 135
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + I +TT+ +V+ L G V+ + + NG I E+ V
Sbjct: 52 ERILDIPVQLSVEIGRTRTTINNVLQLAPGSVVELDAQAGAPMDVLINGYLIAQGEVVVV 111
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+TD + ++
Sbjct: 112 NDRFGIRLTDIVTPAERM 129
>gi|209695732|ref|YP_002263662.1| flagellar motor switch protein [Aliivibrio salmonicida LFI1238]
gi|208009685|emb|CAQ79984.1| polar flagellar switch protein FliN [Aliivibrio salmonicida
LFI1238]
Length = 127
Score = 73.5 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 35/95 (36%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
++ + + V I + ++++++ L G V+ +
Sbjct: 31 EETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVELDRIAGESLDV 90
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
NG I E+ V + IR+TD I+ ++ K
Sbjct: 91 MVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 125
>gi|190574231|ref|YP_001972076.1| putative flagellar motor switch protein [Stenotrophomonas
maltophilia K279a]
gi|254524027|ref|ZP_05136082.1| flagellar protein [Stenotrophomonas sp. SKA14]
gi|190012153|emb|CAQ45776.1| putative flagellar motor switch protein [Stenotrophomonas
maltophilia K279a]
gi|219721618|gb|EED40143.1| flagellar protein [Stenotrophomonas sp. SKA14]
Length = 111
Score = 73.5 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +++++ L G V+ + NG I E+ +
Sbjct: 32 ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD ++ ++
Sbjct: 92 RFGVRLTDVVSPSERI 107
>gi|304438437|ref|ZP_07398377.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304368520|gb|EFM22205.1| flagellar motor switch phosphatase FliY [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 397
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 36/75 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + ++ + K ++K+++ L G ++ + NGK + E+ + +
Sbjct: 318 ILDVPLQVNVELGRTKKSIKEILDLTKGSIVELDKLAGETVDIMVNGKYLAKGEVVVIDE 377
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ ++ ++
Sbjct: 378 NFGVRITEIVSPLER 392
>gi|194365649|ref|YP_002028259.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
R551-3]
gi|194348453|gb|ACF51576.1| flagellar motor switch protein FliN [Stenotrophomonas maltophilia
R551-3]
Length = 111
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + +++++ L G V+ + NG I E+ +
Sbjct: 32 ILDVPVTLSLEVGRARLPIRNLLQLNQGSVVELERGAGESLDVFVNGTLIAHGEVVVIND 91
Query: 295 NYTIRITDRINFDQKS 310
+ +R+TD ++ ++
Sbjct: 92 RFGVRLTDVVSPSERI 107
>gi|256376459|ref|YP_003100119.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
gi|255920762|gb|ACU36273.1| flagellar motor switch protein FliN [Actinosynnema mirum DSM 43827]
Length = 250
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 36/76 (47%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + + T++++++L G VI + A L NG+ I E+ +
Sbjct: 169 ELLHGVEMEVTAELGRTRLTVRELLSLSNGAVIELDRAAGSPADLLVNGRLIARGEVVVI 228
Query: 293 GKNYTIRITDRINFDQ 308
+N+ IR+T+ I
Sbjct: 229 DENFGIRVTEIIKPGD 244
>gi|283782105|ref|YP_003372860.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
gi|283440558|gb|ADB19000.1| flagellar motor switch protein FliN [Pirellula staleyi DSM 6068]
Length = 212
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 34/76 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+++++ + + L+DV+ L+ G V+ + NG+ I E+ +
Sbjct: 135 ELLRDVDLDLRIELGRTEMFLEDVLKLRRGSVVTLDKLAGDPVDIYVNGRLIARGEVLVL 194
Query: 293 GKNYTIRITDRINFDQ 308
N+ +R+ + ++ D
Sbjct: 195 NDNFCVRVAELLSGDD 210
>gi|256370969|ref|YP_003108793.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007553|gb|ACU53120.1| flagellar motor switch protein FliN [Acidimicrobium ferrooxidans
DSM 10331]
Length = 95
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 29/74 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + ++ ++ L G VI + NG + E+ V
Sbjct: 14 LRNVELELSVELGRARMPVRALLALTSGDVIELDRHANAPVDVLVNGTLVAKGEVVVVDD 73
Query: 295 NYTIRITDRINFDQ 308
+ +RI + I+ D+
Sbjct: 74 EFGVRILEIISSDE 87
>gi|261886179|ref|ZP_06010218.1| flagellar motor switch protein [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 101
Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + T+K+++ L++G VI L N + E+
Sbjct: 16 DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVVVY 75
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 76 EKNLAIRINEILDSK 90
>gi|323703179|ref|ZP_08114832.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
DSM 574]
gi|323531838|gb|EGB21724.1| flagellar motor switch protein FliN [Desulfotomaculum nigrificans
DSM 574]
Length = 131
Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 27/73 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I + L++V+ L +G VI + N ++ E+ V
Sbjct: 49 LADVQITISAELGETTLKLREVLNLDVGSVIDLNKSAGDAINIYFNDRKAAKGEVIVVND 108
Query: 295 NYTIRITDRINFD 307
++ +RI I
Sbjct: 109 SFAVRINSIIPPK 121
>gi|117928063|ref|YP_872614.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
11B]
gi|117648526|gb|ABK52628.1| flagellar motor switch protein FliN [Acidothermus cellulolyticus
11B]
Length = 123
Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + T++++++L G V+ + L NG I E+ +
Sbjct: 43 ELLQNVEMGVTAELGRTRMTVRELLSLAPGMVVELNRAAGSPIDLYVNGTLIARGEVVVI 102
Query: 293 GKNYTIRITDRINFDQKS 310
+ + +RI++ + D +
Sbjct: 103 DEEFGVRISEIVGPDSER 120
>gi|49184601|ref|YP_027853.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str.
Sterne]
gi|65319044|ref|ZP_00392003.1| COG1868: Flagellar motor switch protein [Bacillus anthracis str.
A2012]
gi|227815464|ref|YP_002815473.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC
684]
gi|49178528|gb|AAT53904.1| flagellar motor switch protein, C-terminus [Bacillus anthracis str.
Sterne]
gi|227003444|gb|ACP13187.1| flagellar motor switch protein FliM [Bacillus anthracis str. CDC
684]
Length = 120
Score = 73.1 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTL 253
+ + IP ++ + S + + K Q+ + I +K T+
Sbjct: 9 TVRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTM 68
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
++ ++ G +IP + + +GK ++C +G+ G +
Sbjct: 69 GEIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 113
>gi|332187865|ref|ZP_08389598.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
gi|332012026|gb|EGI54098.1| flagellar motor switch protein FliN [Sphingomonas sp. S17]
Length = 96
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R ++V + I + +L++++ L VI + + NG I E+ V
Sbjct: 19 RLLQDVDVKLTVEIGSTQLSLRELLALSESSVIELDRQANELLDVLVNGTLIGRGEVVTV 78
Query: 293 GKNYTIRITDRINFDQK 309
G + +R+T+ +N D++
Sbjct: 79 GDRFGVRMTELVNPDKR 95
>gi|307747018|gb|ADN90288.1| Hypothetical protein CJM1_0060 [Campylobacter jejuni subsp. jejuni
M1]
Length = 123
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + RI KK LKDV+T+ IG V+ + K I E+ V
Sbjct: 42 NLIMDVRLPVRVRIGNKKMLLKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIV 101
Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
N+ ++IT+ I ++ L+
Sbjct: 102 DGNFGVQITE-IGSKKERLEQLR 123
>gi|312884903|ref|ZP_07744593.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367380|gb|EFP94942.1| flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 138
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSE--DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
P+ + + L + QS D + V I + + ++++++ L
Sbjct: 24 PEIDVDEVMSAQLDELEDTSEQSSLSDDERRKIDSILDIPVTISMEVGRSQISIRNLLQL 83
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
G V+ + NG I E+ V + IR+TD I+ ++ K
Sbjct: 84 NQGSVVELERLAGESLDVLVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKK 136
>gi|71042010|pdb|1YAB|A Chain A, Structure Of T. Maritima Flin Flagellar Rotor Protein
gi|71042011|pdb|1YAB|B Chain B, Structure Of T. Maritima Flin Flagellar Rotor Protein
Length = 87
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + TLK V+ + G +I + NGK I E+ +
Sbjct: 5 ELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGEVVVI 64
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT+ ++ ++
Sbjct: 65 DENFGVRITEIVSPKERL 82
>gi|167770205|ref|ZP_02442258.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
17241]
gi|167667527|gb|EDS11657.1| hypothetical protein ANACOL_01548 [Anaerotruncus colihominis DSM
17241]
Length = 446
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
Q + + +++++ I K +KD++ G VI +
Sbjct: 344 PQFTVQQTDSPTSNANMDLLMGVSLDVSVEIGQTKRKIKDIIDFGQGTVIELNKQAGAPV 403
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLKN 313
+ NG+ + ++ + N+ +RIT+ + + +SLK
Sbjct: 404 DIVVNGRLLARGDVVVIDDNFGVRITEIVGTKELMESLKE 443
>gi|90415344|ref|ZP_01223278.1| flagellar motor switch protein FliN [marine gamma proteobacterium
HTCC2207]
gi|90332667|gb|EAS47837.1| flagellar motor switch protein FliN [marine gamma proteobacterium
HTCC2207]
Length = 108
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 28/79 (35%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
A + V I + ++D++ L G V+ L N + E+
Sbjct: 27 ADVLQNIPVTISVEVGRTSLKIRDLMRLTQGSVVELDRIAGEPLDLLVNNTLVAQGEVVL 86
Query: 292 VGKNYTIRITDRINFDQKS 310
V + Y +R+T I +
Sbjct: 87 VNERYGVRLTSVIPTADRV 105
>gi|83815329|ref|YP_446688.1| flagellar motor switch FliN [Salinibacter ruber DSM 13855]
gi|83756723|gb|ABC44836.1| possible flagellar motor switch FliN [Salinibacter ruber DSM 13855]
Length = 250
Score = 73.1 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/256 (9%), Positives = 62/256 (24%), Gaps = 54/256 (21%)
Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQES 156
+ + V E + G L + +Q + ++
Sbjct: 1 MALDPDWVPLFSEAMFGEEMAPDADGA--------LDLMQEISSQGFGTVQSTLAEEG-- 50
Query: 157 SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT------- 209
L + +E + ++++P +
Sbjct: 51 -LTLPEVQFDTAAPGQAPPSPDEAAWLVPFTAQRGGGELDGLVLLPDGAEASSDASTTTE 109
Query: 210 -----------------------TLISLSSQNKSENQSEDLIDPFARK------------ 234
S + ++ S +
Sbjct: 110 SAPQEAAAGADQSSGASQPAGGGAPSSSADESDGVEVSPAAFSELGDEEISGDGDSGTFK 169
Query: 235 -TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+++ + + ++ L DV+ L G V+ + ANG+ I E +
Sbjct: 170 LLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVID 229
Query: 294 KNYTIRITDRINFDQK 309
+ + +RIT+ + +
Sbjct: 230 EQFGVRITNLASEGHR 245
>gi|329849953|ref|ZP_08264799.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
C19]
gi|328841864|gb|EGF91434.1| flagellar motor switch protein FliN [Asticcacaulis biprosthecum
C19]
Length = 108
Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G V+ + + N + + E+ V
Sbjct: 32 VFDVPVNISAVLGKSYMSVSQLLKLGAGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDD 91
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I +
Sbjct: 92 RLGVTMTEIIKSED 105
>gi|160939655|ref|ZP_02087003.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
BAA-613]
gi|158437446|gb|EDP15210.1| hypothetical protein CLOBOL_04547 [Clostridium bolteae ATCC
BAA-613]
Length = 368
Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +N+ I + LKDV+ G V+ + + NG+ I E+ +
Sbjct: 289 IMDVPLNVSVEIGKTRRRLKDVLNFSNGTVVELDKQSDAPVDIIVNGQLIARGEVVVIDD 348
Query: 295 NYTIRITDRINF 306
N+ +RI++ +N
Sbjct: 349 NFGVRISEIVNT 360
>gi|323490152|ref|ZP_08095372.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
gi|323396200|gb|EGA89026.1| flagellar motor switch protein [Planococcus donghaensis MPA1U2]
Length = 351
Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
Q T S + + + + + + + + K +KD++ + G
Sbjct: 241 QSPEAPTVQNVQFSSFDNTDVASSETNNL-NLLLDIPLQVTVELGRTKRMVKDILEISQG 299
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+I + N K I E+ + +N+ +R+TD ++ ++ K
Sbjct: 300 SIIELDKLAGEPVDILINNKLIAVGEVVVIDENFGVRVTDVLSTAERISK 349
>gi|254683265|ref|ZP_05147126.1| flagellar motor switch protein FliM [Bacillus anthracis str.
CNEVA-9066]
gi|254734618|ref|ZP_05192330.1| flagellar motor switch protein FliM [Bacillus anthracis str.
Western North America USA6153]
gi|254741027|ref|ZP_05198715.1| flagellar motor switch protein FliM [Bacillus anthracis str. Kruger
B]
gi|254755270|ref|ZP_05207304.1| flagellar motor switch protein FliM [Bacillus anthracis str.
Vollum]
gi|254759806|ref|ZP_05211830.1| flagellar motor switch protein FliM [Bacillus anthracis str.
Australia 94]
Length = 111
Score = 72.7 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLK 254
+ IP ++ + S + + K Q+ + I +K T+
Sbjct: 1 MRIGIPFLSVEEIMDKLTSENIVEHSSDKRKKYTSEVEVKVNQVYKPVHVAIGEQKMTMG 60
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
++ ++ G +IP + + +GK ++C +G+ G +
Sbjct: 61 EIEQIEEGDIIPLHTKVSDELLGYVDGKHKFNCFIGKDGTRKAL 104
>gi|85859178|ref|YP_461380.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
gi|85722269|gb|ABC77212.1| flagellar motor switch protein [Syntrophus aciditrophicus SB]
Length = 163
Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 33/78 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + + +++ L G +I + + N + I E+ V +
Sbjct: 84 ILDIPLTLSVELGRCRMLISELLQLGQGSIIELVKLAGEPMDVYVNQRLIARGEVVVVNE 143
Query: 295 NYTIRITDRINFDQKSLK 312
+ IR+TD ++ ++ K
Sbjct: 144 KFGIRLTDIVSPAERVNK 161
>gi|94264048|ref|ZP_01287848.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|94266366|ref|ZP_01290065.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|93453018|gb|EAT03506.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
gi|93455559|gb|EAT05746.1| Surface presentation of antigens (SPOA) protein [delta
proteobacterium MLMS-1]
Length = 136
Score = 72.7 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 28/76 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + ++ L G V+ + N K + E+ V +
Sbjct: 57 LLDVPLEVTVELGRTSMIINKLLQLTQGSVVELDKAAGASVEIYVNRKLMGKGEVVVVNE 116
Query: 295 NYTIRITDRINFDQKS 310
+ IR+T+ I+ +
Sbjct: 117 RFGIRVTEIISQADRI 132
>gi|218778862|ref|YP_002430180.1| flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
AK-01]
gi|218760246|gb|ACL02712.1| Flagellar motor switch protein FliN [Desulfatibacillum alkenivorans
AK-01]
Length = 119
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ ++I + +KD++ L G V+ + NGK E+ V +
Sbjct: 40 ILDIPLDITVELGRTSMRIKDLLQLGQGAVVELTKLAGEPMEIFVNGKLFARGEVVVVNE 99
Query: 295 NYTIRITDRINFDQKSLKNFL 315
+ +R+TD ++ Q+ +K+
Sbjct: 100 KFGVRLTDIVSP-QERIKSLR 119
>gi|91224471|ref|ZP_01259733.1| type III secretion protein [Vibrio alginolyticus 12G01]
gi|91190813|gb|EAS77080.1| type III secretion protein [Vibrio alginolyticus 12G01]
Length = 322
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 38/99 (38%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+L K N ++ QL V + I + TL+ + L+ G V
Sbjct: 222 DQTLHIMEKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQP 281
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L ANGK I CEL V ++ +R+ + Q+
Sbjct: 282 VSKPVTLRANGKIIGECELVNVNEHLGVRVLELFGGTQE 320
>gi|225620313|ref|YP_002721570.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
gi|225215132|gb|ACN83866.1| flagellar motor switch protein [Brachyspira hyodysenteriae WA1]
Length = 84
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 33/71 (46%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ +N+ + + ++++++ L G +I L NGK I E+ + +
Sbjct: 1 MDVTINVTVELGRARLSIREILGLGEGSIIELQKLAGEPVDLLVNGKLIAKGEVVVIDEC 60
Query: 296 YTIRITDRINF 306
+ +R+TD ++
Sbjct: 61 FGVRVTDIVDS 71
>gi|254517015|ref|ZP_05129073.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
gi|219674520|gb|EED30888.1| flagellar motor switch protein FliN [gamma proteobacterium NOR5-3]
Length = 116
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + I + +KD++ L G ++ K L NG I E+
Sbjct: 35 DLLMDVQVTLSVEIGRTRLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVES 94
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ +R+ D ++ ++ K
Sbjct: 95 AGQFGLRLIDVVSPSERLKK 114
>gi|51246521|ref|YP_066405.1| flagellar motor switch protein (FliN) [Desulfotalea psychrophila
LSv54]
gi|50877558|emb|CAG37398.1| probable flagellar motor switch protein (FliN) [Desulfotalea
psychrophila LSv54]
Length = 123
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
Y + + + + K +KD++ + G VI L N + I E +G
Sbjct: 43 LYDVPLEVSVEVGRSKILIKDLLNMGEGYVIELNKVAGDPLDLYVNSRLIARGEAVMIGD 102
Query: 295 NYTIRITDRINFDQKS 310
+ IR+TD ++ +
Sbjct: 103 KFGIRLTDVVSASDRL 118
>gi|322421723|ref|YP_004200946.1| flagellar motor switch protein FliN [Geobacter sp. M18]
gi|320128110|gb|ADW15670.1| flagellar motor switch protein FliN [Geobacter sp. M18]
Length = 101
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K ++DV+ L G V+ + N K + E V
Sbjct: 22 IMDIPLQLTVELGRTKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAVVVND 81
Query: 295 NYTIRITDRINFDQKS 310
+ IR+ D ++ +++
Sbjct: 82 KFGIRLLDIVSPNERV 97
>gi|84514808|ref|ZP_01002171.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
SKA53]
gi|84510967|gb|EAQ07421.1| Flagellar motor switch FliN protein [Loktanella vestfoldensis
SKA53]
Length = 102
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+N+ ++ D + V + + + ++ +++ L G V+
Sbjct: 2 KEQKMENQDKDPKGPETDKLR-ALENIEVEMSVEVGRTEISISELLRLNEGSVVELDRLA 60
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG I E+ VG+ + IR +D ++ + +
Sbjct: 61 GEPLDILVNGTLIAKGEIVMVGERFGIRFSDIVDPENRV 99
>gi|28901395|ref|NP_801050.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|153836038|ref|ZP_01988705.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
AQ3810]
gi|260362949|ref|ZP_05775818.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|260880236|ref|ZP_05892591.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|260895353|ref|ZP_05903849.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|260901178|ref|ZP_05909573.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|28809942|dbj|BAC62883.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|29423527|gb|AAO73589.1| lateral flagellar FliM-like motor switch protein [Vibrio
parahaemolyticus]
gi|149750792|gb|EDM61537.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
AQ3810]
gi|308085727|gb|EFO35422.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|308092442|gb|EFO42137.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|308109388|gb|EFO46928.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|308112168|gb|EFO49708.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
Length = 272
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/305 (15%), Positives = 87/305 (28%), Gaps = 48/305 (15%)
Query: 8 KNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQ 66
+ PL LL + I +L L + + + V+ S TS
Sbjct: 10 SDIKPLDVELLGKPIH------IIRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVD 63
Query: 67 SGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
+FS + + F+ ++ L + GA+ E
Sbjct: 64 LHRFSPAMMDKDQTS----THKHQEGGMVFVHGDTQTLVKLADRFYGANTERSVAT---- 115
Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
L+ + +L +R I L E +
Sbjct: 116 LTASDLRLQERISRIIIGWLAPQDMWEA-CEYE------------------APRGIGLCV 156
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+N+T E S L + + DL +PF R V ++
Sbjct: 157 QLNITFEGYQGSMYLKLDTHLIQTLIEQL------ELQSDVDLYEPFCRSLESTPVRLNV 210
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ K L DVV+LK ++P +S + +++ + +
Sbjct: 211 VLSKKTMALSDVVSLKPDDIMPIELL--NTVPVSIGNQPLFTGRIAEQDGQLVL----IF 264
Query: 305 NFDQK 309
N D++
Sbjct: 265 NPDKE 269
>gi|325295397|ref|YP_004281911.1| flagellar motor switch protein FliN [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065845|gb|ADY73852.1| flagellar motor switch protein FliN [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 122
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 31/74 (41%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + I L++++ L ++ + NGK + +L + +NY
Sbjct: 44 DIPLEVSIEIGSTSLPLEEILKLHTNSIVELDRYIHEPVDIKINGKLVAKGKLYTIRENY 103
Query: 297 TIRITDRINFDQKS 310
I+IT I +++
Sbjct: 104 GIKITQIITPEERM 117
>gi|269796384|ref|YP_003315839.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
10542]
gi|269098569|gb|ACZ23005.1| flagellar motor switch protein FliN [Sanguibacter keddieii DSM
10542]
Length = 247
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R Y + + + I K ++ V+ L G VI + A L NG+ I E+ +
Sbjct: 169 RLLYDVEMTLSAEIGRAKLPVRQVLELVPGAVIELDRVAGSPADLMVNGRLIARGEVVVI 228
Query: 293 GKNYTIRITDRINFDQ 308
++Y +RIT+ ++ +
Sbjct: 229 DEDYGLRITEIVDLAE 244
>gi|315497631|ref|YP_004086435.1| flagellar motor switch protein flin [Asticcacaulis excentricus CB
48]
gi|315415643|gb|ADU12284.1| flagellar motor switch protein FliN [Asticcacaulis excentricus CB
48]
Length = 110
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 29/74 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G V+ + + N + + E+ V +
Sbjct: 34 VFDVPVNISAVLGKAYMSVSQLLKLGQGSVLELDRKVGEAIDIYVNNRLVARGEVVVVDE 93
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I +
Sbjct: 94 RLGVTMTEIIKSED 107
>gi|51893151|ref|YP_075842.1| hypothetical protein STH2013 [Symbiobacterium thermophilum IAM
14863]
gi|51856840|dbj|BAD40998.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 227
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 28/73 (38%)
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ + + + + L +++++ G VI + NG + E+
Sbjct: 145 ALRGVLLDIELTLSVELGKARLPLGEILSMGPGSVITLDRLASEPLNVKVNGLPAMTAEV 204
Query: 290 GRVGKNYTIRITD 302
+G+ Y IRI +
Sbjct: 205 IAIGEKYGIRIVE 217
>gi|119953076|ref|YP_945285.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
gi|119861847|gb|AAX17615.1| flagellar motor switch protein FliN [Borrelia turicatae 91E135]
Length = 114
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK I E+ + +
Sbjct: 40 LMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVIAKGEVVVIDE 99
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 100 NFGVRITEIIKIKNE 114
>gi|302670734|ref|YP_003830694.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
B316]
gi|302395207|gb|ADL34112.1| flagellar motor switch protein FliY [Butyrivibrio proteoclasticus
B316]
Length = 412
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 28/70 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + + D++ G +I + NGK + E+ + +
Sbjct: 342 IKDVPLEVTVELGRTAKPIADILDFAPGTIIELDKVAGEPVDVLVNGKFVAKGEVVVIEE 401
Query: 295 NYTIRITDRI 304
++ +R+T+ +
Sbjct: 402 SFGVRVTEIV 411
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 5/185 (2%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLS-S 90
+ + + ++ V+I+ + + H+I +++ VF Q +
Sbjct: 58 KDAIGEVANISMGSSATTLYSLVNQKVNITTPQVELANWEHVIDNYERPCVFIQIKYTVG 117
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHE-TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
+ + V+ + + ++G T ++ LS + + + + + L+
Sbjct: 118 LDGTNILILKEHDVMVITDLMMGGDGTNTEGEIGELQLSAISEA-MNQMMGAAATSLSTM 176
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNR-LSNEFVTTINMNMTIEN-VASSFVLIIPQETLL 207
I+ + SP D+ + I+ M + + V S+ + + P +
Sbjct: 177 INQKVDISPPQATLLDMINDDPSDIAEFLTGTFVRISFKMQVGDLVDSTLMQLYPIDFAK 236
Query: 208 KTTLI 212
Sbjct: 237 TLKDT 241
>gi|187918151|ref|YP_001883714.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
gi|119860999|gb|AAX16794.1| flagellar motor switch protein FliN [Borrelia hermsii DAH]
Length = 114
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 40 LMDVSMQVTVELGRTERKIKDILGMSEGTIITLDKLAGEPVDILVNGKVVAKGEVVVIDE 99
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 100 NFGVRITEIIKIKNE 114
>gi|168334558|ref|ZP_02692714.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Epulopiscium sp. 'N.t. morphotype B']
Length = 408
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K +++++ G +I + NGK I S E+ + +
Sbjct: 333 LLDVALEVSVELGRTKKKIREILDFSEGSIIELDKLVGEPIDILVNGKFIASGEVVVIDE 392
Query: 295 NYTIRITDRINFDQKS 310
N+ +RI I + +
Sbjct: 393 NFGVRIKSIIKPENRI 408
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 3/209 (1%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF-K 78
R + +G + ++ V I+ + +I S
Sbjct: 28 RSSSGHALTPDEIDALGEIGNINMGTAATTLFALLNHKVMITTPHVELLTAQELIDSVAP 87
Query: 79 ENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
+ S + + + V + + ++G + N + + +
Sbjct: 88 DIVTVSVDYTVGLTGTNLLMLKESDVRIIADLMMGGVGLDNGEELNELHLSAISEAMNQM 147
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN--VASS 196
I S ++Q + SP ++ K V ++ M I + + S
Sbjct: 148 IGSSSTSMSQMFDKKIDISPPHAVQFESAKDKIEQLISGENMVVKVSFRMQILDDIIDSE 207
Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSE 225
+ I+P + ++S + + S
Sbjct: 208 LMQILPMSFAKELVDNLMNSMSTMGDVSS 236
>gi|27382113|ref|NP_773642.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
gi|27355283|dbj|BAC52267.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
Length = 116
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 29/76 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + +++ L G V+ R + N K + E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRRVGEAIDIYVNNKLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I ++
Sbjct: 100 EDKLGVTMTEIIKTER 115
>gi|77463632|ref|YP_353136.1| flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
gi|221639475|ref|YP_002525737.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|332558488|ref|ZP_08412810.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
gi|77388050|gb|ABA79235.1| Flagellar motor switch FliN protein [Rhodobacter sphaeroides 2.4.1]
gi|221160256|gb|ACM01236.1| Flagellar switch protein [Rhodobacter sphaeroides KD131]
gi|332276200|gb|EGJ21515.1| Flagellar switch protein [Rhodobacter sphaeroides WS8N]
Length = 98
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + + T++D++ L G V+ + NG I E+ V
Sbjct: 18 RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77
Query: 293 GKNYTIRITDRINFDQK 309
G+ + IR I +++
Sbjct: 78 GERFGIRFGQIIEPEKR 94
>gi|74101639|gb|AAZ99729.1| FliNL [Aeromonas hydrophila]
Length = 125
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
Q+ V + + + +L +++ ++ G VI + NG+ + E+ V
Sbjct: 47 RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGEPLDVRVNGRLLAKGEVVVVNGK 106
Query: 296 YTIRITDRINFD 307
Y +R+ D I+ +
Sbjct: 107 YGLRLVDVIDTN 118
>gi|167626140|ref|YP_001676434.1| hypothetical protein Shal_4235 [Shewanella halifaxensis HAW-EB4]
gi|167356162|gb|ABZ78775.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4]
Length = 293
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/294 (10%), Positives = 81/294 (27%), Gaps = 28/294 (9%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ P+ L+ + +E + + L I ++ +S ++
Sbjct: 17 DVRPV--ALIKEKLARSRLLMQLESCRRPIMDAVNELLTPITRQGHYGLSKVSLSA---- 70
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
K + + + + + L G+ + R+ S
Sbjct: 71 KANVVTPQLHHAWFLLSYNRIDLGWWL---IDKCTLDQLASGYYGSCSSALQSPM-RAPS 126
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
E +L KR + + L P E D L+ N + +
Sbjct: 127 QSEYRLVKRLMMAVIRTL-----------PVTEIDEDKLELELVMNTTPIKAPVCCELAF 175
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ + + + L ++ Q +L A + Q+ + +
Sbjct: 176 PAAHAGPALCFYMAEHLLE-----LMAEQPSQYQADPELSLKLAHRLKQIPLRTLLELGH 230
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + + +L +G ++P + + ++ + ++T
Sbjct: 231 QSMPVTSLQSLAVGDILPMNLHSRCPVT--VGKRPLFYATVHTHEGQMVAKLTQ 282
>gi|126462464|ref|YP_001043578.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17029]
gi|126104128|gb|ABN76806.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17029]
Length = 98
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + + T++D++ L G V+ + NG I E+ V
Sbjct: 18 RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77
Query: 293 GKNYTIRITDRINFDQK 309
G+ + IR I +++
Sbjct: 78 GERFGIRFGQIIEPEKR 94
>gi|203284198|ref|YP_002221938.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|203287737|ref|YP_002222752.1| flagellar motor switch protein [Borrelia recurrentis A1]
gi|201083641|gb|ACH93232.1| flagellar motor switch protein [Borrelia duttonii Ly]
gi|201084957|gb|ACH94531.1| flagellar motor switch protein [Borrelia recurrentis A1]
Length = 114
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 33/75 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + + +KD++ + G +I + NGK + E+ + +
Sbjct: 40 LMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDE 99
Query: 295 NYTIRITDRINFDQK 309
N+ +RIT+ I +
Sbjct: 100 NFGVRITEIIKIKNE 114
>gi|146277688|ref|YP_001167847.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17025]
gi|145555929|gb|ABP70542.1| flagellar motor switch protein FliN [Rhodobacter sphaeroides ATCC
17025]
Length = 98
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + + T++D++ L G V+ + NG I E+ V
Sbjct: 18 RLLENIGVRLTVEVGRTEMTIRDLLRLSEGSVVELDRLAGDPLDVLVNGTPIAKGEVVMV 77
Query: 293 GKNYTIRITDRINFDQK 309
G+ + IR I +++
Sbjct: 78 GERFGIRFGQIIEPEKR 94
>gi|71282178|ref|YP_268252.1| flagellar motor switch protein [Colwellia psychrerythraea 34H]
gi|71147918|gb|AAZ28391.1| flagellar motor switch protein FliN [Colwellia psychrerythraea 34H]
Length = 131
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V I + ++++++ L G V+ + NG I E+ V
Sbjct: 50 DAILDIPVTISMEVGRSNISIRNLLQLNQGSVVELDRVAGESLDVLVNGTLIAHGEVVVV 109
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ IR+TD ++ ++ K
Sbjct: 110 NDKFGIRLTDVVSQVERIKK 129
>gi|294508624|ref|YP_003572683.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
gi|294344953|emb|CBH25731.1| flagellar motor switch protein FliN [Salinibacter ruber M8]
Length = 236
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 33/77 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + ++ L DV+ L G V+ + ANG+ I E +
Sbjct: 155 KLLADVDLEVRVELGRRELPLADVLKLTTGSVVELEKMVGEPLSVYANGRLIAEGEAVVI 214
Query: 293 GKNYTIRITDRINFDQK 309
+ + +RIT+ + +
Sbjct: 215 DEQFGVRITNLASEGHR 231
>gi|118475399|ref|YP_891558.1| flagellar motor switch protein [Campylobacter fetus subsp. fetus
82-40]
gi|118414625|gb|ABK83045.1| flagellar motor switch protein FliN [Campylobacter fetus subsp.
fetus 82-40]
Length = 101
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + T+K+++ L++G VI L N + E+
Sbjct: 16 DELLDIGVEFISELGTTSITVKELLKLEVGSVIDLEKPAGESVELYINNRIFGKGEVMVY 75
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 76 EKNLAIRINEILDSK 90
>gi|188583758|ref|YP_001927203.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
gi|179347256|gb|ACB82668.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
Length = 115
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + V + + + + D++ L G V+ + + N + + E+ V
Sbjct: 40 EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFD 307
+ + +T+ I D
Sbjct: 100 DERLGVTMTEIIKND 114
>gi|302387781|ref|YP_003823603.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
gi|302198409|gb|ADL05980.1| CheC, inhibitor of MCP methylation / FliN fusion protein
[Clostridium saccharolyticum WM1]
Length = 456
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ + + + + + + + I + +K+++ G ++
Sbjct: 361 PQNSLREGEANYEEQEENRELIMGVPLEVSVEIGRTRKLVKEILEFTKGSLVILDKLAGE 420
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L NG+ I ++ V N+ IRIT+ + +
Sbjct: 421 QVDLYVNGRCIAKGDVVVVDDNFGIRITEITKRNAE 456
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 56/185 (30%), Gaps = 4/185 (2%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI-IHSFKENFVFSQA 86
+ + ++ VDI+ + I + +
Sbjct: 7 SAFEIDAIGEILNISLGASATAVSTMLNARVDITTPVVRVLTKDEFEISNLEPAIGVEIT 66
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+S S + + + V +++ L+G N + ++ + + + L
Sbjct: 67 YISGLSGSNLMLLKRHDVKVIVDMLMGMETPEEEFELNELNISAICEVMNQMMGSSATAL 126
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE-FVTTINMNMTIEN-VASSFVLIIPQE 204
++ +S T S F + +E + + + I + + S F+ ++P
Sbjct: 127 SEFLSKTVNISTPTS-FEVGNINDFKDKYYHDENLMVVVGFTLKIADQLESEFINVMPPS 185
Query: 205 TLLKT 209
+
Sbjct: 186 LAKEL 190
>gi|126697843|ref|YP_001086740.1| putative flagellar motor switch protein [Clostridium difficile 630]
gi|255099441|ref|ZP_05328418.1| putative flagellar motor switch protein [Clostridium difficile
QCD-63q42]
gi|255305299|ref|ZP_05349471.1| putative flagellar motor switch protein [Clostridium difficile ATCC
43255]
gi|115249280|emb|CAJ67093.1| Flagellar motor switch phosphatase FliN [Clostridium difficile]
Length = 124
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ L + + I K TL+D++ L G +I + + K + ++ V
Sbjct: 43 QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELDTLADQDVEILIDNKVLAYGKVVVV 102
Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
N+ ++IT ++ ++ +K+ +
Sbjct: 103 DLNFGVKITSIVS-EEDMVKSLV 124
>gi|328469329|gb|EGF40275.1| putative flagellar motor switch protein [Vibrio parahaemolyticus
10329]
Length = 272
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 38/280 (13%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
I +L L + + + V+ S TS +FS + +
Sbjct: 27 IRDKLENLISESCSSLTNELQNWLSTNKVEASLTSVDLHRFSPAMMDKDQTS----THKH 82
Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
F+ ++ L + GA+ E L+ + +L +R I
Sbjct: 83 QEGGMVFVHGDTQTLVKLADRFYGANTERSVAT----LTASDLRLQERISRIIIG----- 133
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
Q+ E + + +N+T E S L + +
Sbjct: 134 WLAPQDMWEACEYE------------APRDIGLCVQLNITFEGYQGSMYLKLDTHLIQTL 181
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
DL +PF R V ++ ++ K L DVV+LK ++P
Sbjct: 182 IEQL------ELQSDVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIEL 235
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+S + +++ + + N D++
Sbjct: 236 L--NTVPVSIGNQPLFTGRIAEQDGQLVL----IFNPDKE 269
>gi|91223207|ref|ZP_01258473.1| putative flagellar motor switch protein [Vibrio alginolyticus
12G01]
gi|91192020|gb|EAS78283.1| putative flagellar motor switch protein [Vibrio alginolyticus
12G01]
Length = 272
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 38/299 (12%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDL-DVDISYTSCQSGKF 70
P+ L + I + +L L + + V+ S TS +F
Sbjct: 8 PISDSQLLDVELLGKPIHIIREKLDNLISESCSNLTTELQNWLSTGKVEASLTSVDLHRF 67
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+ + ++ + FI + + +I L + GAS E L+
Sbjct: 68 TSVEMDKEQTSTYQHQE----GGMVFIHGNPHTLIKLADRFYGASAERSAAT----LTAS 119
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
+ +L +R I E E + +N+
Sbjct: 120 DLRLQERISRIIIG-----WLAPGEMWDTGEYE------------TPRGIGINVQLNIAF 162
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
++ S L + + DL PF R V ++ ++ KK
Sbjct: 163 DDHQGSIHLKLDGHLIQTLIEQL------ELQPDTDLFQPFCRSLETTPVRLNVVLSKKK 216
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
L DVV L+ ++P +S + +++ + + N D++
Sbjct: 217 MPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL----IFNPDKE 269
>gi|254228244|ref|ZP_04921673.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
Ex25]
gi|262394134|ref|YP_003285988.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
gi|151939317|gb|EDN58146.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio sp.
Ex25]
gi|262337728|gb|ACY51523.1| type III secretion inner membrane protein YscQ [Vibrio sp. Ex25]
Length = 322
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
K N ++ QL V + I + TL+ + L+ G V L
Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTL 288
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
ANGK I CEL V ++ +R+ + Q+
Sbjct: 289 RANGKIIGECELVNVNEHLGVRVLELFGGTQE 320
Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285
+ L V + + TL + +L++G VI F K AI + + ++
Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216
Query: 286 SCEL 289
C+L
Sbjct: 217 RCQL 220
>gi|197120187|ref|YP_002140614.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
gi|253702496|ref|YP_003023685.1| flagellar motor switch protein FliN [Geobacter sp. M21]
gi|197089547|gb|ACH40818.1| flagellar motor switch protein FliN [Geobacter bemidjiensis Bem]
gi|251777346|gb|ACT19927.1| flagellar motor switch protein FliN [Geobacter sp. M21]
Length = 101
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K ++DV+ L G V+ + N K + E V
Sbjct: 22 IMDIPLQLTVELGRSKLLVRDVLQLNQGSVVELTKLAGEPLDVFVNSKLVARGEAVVVND 81
Query: 295 NYTIRITDRINFDQKS 310
+ IR+ D ++ +++
Sbjct: 82 KFGIRLLDIVSPNERV 97
>gi|117926841|ref|YP_867458.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
gi|117610597|gb|ABK46052.1| flagellar motor switch protein FliN [Magnetococcus sp. MC-1]
Length = 137
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ DL + + + R+ +KD++ L G ++ +
Sbjct: 44 DVSTDGDLPKNL-ELLMDVPLEVSVRLGSVSYQIKDLLRLNKGSLVELEKEADDPLEIYV 102
Query: 280 NGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
N + + E+ + IRITD ++ ++
Sbjct: 103 NDRLLAYGEVVMIKDKLGIRITDIVSLKERL 133
>gi|148266211|ref|YP_001232917.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
gi|146399711|gb|ABQ28344.1| flagellar motor switch protein FliN [Geobacter uraniireducens Rf4]
Length = 103
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 216 SQNKSENQSEDLIDPFA----RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
N+ + E + + + + + K +KD++ L G V+
Sbjct: 1 MVNEKIDSDELNNNSLEVKNLEFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLA 60
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K + E + + IR+ D ++ +++
Sbjct: 61 GEPLDVFVNSKLVARGEAVVINDKFGIRLVDIVSPNERV 99
>gi|222053614|ref|YP_002535976.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
gi|221562903|gb|ACM18875.1| flagellar motor switch protein FliN [Geobacter sp. FRC-32]
Length = 100
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 217 QNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ E + + + + K +KD++ L G V+
Sbjct: 1 MTETGELEEQKNAEMKNLDFILDIPLQLTVELGRTKLLVKDILQLNQGAVVELSKLAGEP 60
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
+ N K + E + + IR+ D ++ +++ K
Sbjct: 61 LDVFVNSKLVARGEAVVINDKFGIRLVDIVSPNERVEKAL 100
>gi|88704279|ref|ZP_01101993.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
gi|88701330|gb|EAQ98435.1| Flagellar motor switch protein fliN [Congregibacter litoralis KT71]
Length = 117
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + I K +KD++ L G ++ K L NG I E+
Sbjct: 36 DLLMDVQVTLSVEIGRTKLPIKDLLALNQGSIVSLDRGVKEPLDLMVNGTLIARGEVVES 95
Query: 293 GKNYTIRITDRINFDQKSLK 312
+ +R+ D ++ ++ K
Sbjct: 96 AGQFGLRLIDVVSPSERLKK 115
>gi|254973938|ref|ZP_05270410.1| putative flagellar motor switch protein [Clostridium difficile
QCD-66c26]
gi|255091324|ref|ZP_05320802.1| putative flagellar motor switch protein [Clostridium difficile CIP
107932]
gi|255312982|ref|ZP_05354565.1| putative flagellar motor switch protein [Clostridium difficile
QCD-76w55]
gi|255515741|ref|ZP_05383417.1| putative flagellar motor switch protein [Clostridium difficile
QCD-97b34]
gi|255648835|ref|ZP_05395737.1| putative flagellar motor switch protein [Clostridium difficile
QCD-37x79]
gi|260682052|ref|YP_003213337.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260685650|ref|YP_003216783.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
gi|306518950|ref|ZP_07405297.1| putative flagellar motor switch protein [Clostridium difficile
QCD-32g58]
gi|260208215|emb|CBA60574.1| putative flagellar motor switch protein [Clostridium difficile
CD196]
gi|260211666|emb|CBE01937.1| putative flagellar motor switch protein [Clostridium difficile
R20291]
Length = 124
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ L + + I K TL+D++ L G +I + + K + ++ V
Sbjct: 43 QRILDLKLELSVVIGRTKMTLRDILNLHKGSLIELNTLADQDVEILIDNKVLAYGKVVVV 102
Query: 293 GKNYTIRITDRINFDQKSLKNFL 315
N+ ++IT ++ ++ +K+ +
Sbjct: 103 DLNFGVKITSIVS-EEDMVKSLV 124
>gi|39995530|ref|NP_951481.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
gi|39982293|gb|AAR33754.1| flagellar motor switch protein FliN [Geobacter sulfurreducens PCA]
gi|298504530|gb|ADI83253.1| flagellar motor switch protein FliN [Geobacter sulfurreducens
KN400]
Length = 101
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 36/93 (38%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
K E + +L + + + + K +KDV+ L G V+ +
Sbjct: 5 TKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDV 64
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
N K + E V + + +R+ D ++ +++
Sbjct: 65 FVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 97
>gi|328468942|gb|EGF39902.1| type III secretion system protein [Vibrio parahaemolyticus 10329]
Length = 321
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
QL V + I + TL+ + L+ G V L ANGK I CEL V +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305
Query: 296 YTIRITDRINFDQK 309
+R+ + Q+
Sbjct: 306 LGVRVLELFGGTQE 319
>gi|260365111|ref|ZP_05777682.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus K5030]
gi|260876606|ref|ZP_05888961.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AN-5034]
gi|260895033|ref|ZP_05903529.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus Peru-466]
gi|260900956|ref|ZP_05909351.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ4037]
gi|308086011|gb|EFO35706.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus Peru-466]
gi|308093588|gb|EFO43283.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AN-5034]
gi|308110725|gb|EFO48265.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ4037]
gi|308111696|gb|EFO49236.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus K5030]
Length = 321
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
QL V + I + TL+ + L+ G V L ANGK I CEL V +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305
Query: 296 YTIRITDRINFDQK 309
+R+ + Q+
Sbjct: 306 LGVRVLELFGGTQE 319
>gi|153836164|ref|ZP_01988831.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ3810]
gi|149750439|gb|EDM61184.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
parahaemolyticus AQ3810]
Length = 321
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
QL V + I + TL+ + L+ G V L ANGK I CEL V +
Sbjct: 246 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 305
Query: 296 YTIRITDRINFDQK 309
+R+ + Q+
Sbjct: 306 LGVRVLELFGGTQE 319
>gi|28898445|ref|NP_798050.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
2210633]
gi|28806662|dbj|BAC59934.1| putative translocation protein in type III secretion [Vibrio
parahaemolyticus RIMD 2210633]
Length = 328
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
QL V + I + TL+ + L+ G V L ANGK I CEL V +
Sbjct: 253 QQLPVELTFDIGHQTVTLEQLNQLQPGYVFELNQPVSKPVTLRANGKIIGECELVNVNDH 312
Query: 296 YTIRITDRINFDQK 309
+R+ + Q+
Sbjct: 313 LGVRVLELFGGTQE 326
>gi|124516301|gb|EAY57809.1| flagellar motor switch protein FliN [Leptospirillum rubarum]
gi|206603144|gb|EDZ39624.1| flagellar motor switch protein FliN [Leptospirillum sp. Group II
'5-way CG']
Length = 125
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 32/76 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + R+ + +KD++ L G V+ + N K + E+ V
Sbjct: 47 LLDVPLTVSVRVGTARMLIKDLLQLGQGSVVELDKLAGEPMEILINDKLVARGEVVMVND 106
Query: 295 NYTIRITDRINFDQKS 310
Y +R+TD ++ ++
Sbjct: 107 KYGVRLTDIVSPIERI 122
>gi|254417867|ref|ZP_05031591.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
gi|196184044|gb|EDX79020.1| flagellar motor switch protein FliN [Brevundimonas sp. BAL3]
Length = 110
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 29/74 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ VNI + ++ ++ L G V+ + + N + I E+ V
Sbjct: 34 VFEVPVNISAVLGKSHMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLIARGEVVVVDD 93
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I +
Sbjct: 94 RLGVTMTEIIKTED 107
>gi|262284526|gb|ACY41063.1| VscQ [Vibrio alginolyticus]
Length = 322
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
K N ++ QL V + I + TL+ + L+ G V L
Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKPVTL 288
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
ANGK I CEL V ++ +R+ + Q+
Sbjct: 289 RANGKIIGECELVNVNEHLGVRVLELFGGTQE 320
Score = 37.3 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285
+ L V + + TL + +L++G VI F K AI + + ++
Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216
Query: 286 SCEL 289
C+L
Sbjct: 217 RCQL 220
>gi|146342732|ref|YP_001207780.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
gi|146195538|emb|CAL79565.1| flagellar motor switch protein [Bradyrhizobium sp. ORS278]
Length = 115
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 29/77 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + +++ L G V+ + + N + + E+ V
Sbjct: 39 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 98
Query: 293 GKNYTIRITDRINFDQK 309
+ +T+ I D+
Sbjct: 99 EDKLGVTMTEIIKSDRN 115
>gi|239628948|ref|ZP_04671979.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519094|gb|EEQ58960.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 315
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 103/293 (35%), Gaps = 33/293 (11%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVF--SQASLSSWSSNFFIGCSNNLVI 105
I + +V ++ + + + V + + + +++ + S ++
Sbjct: 24 NILGSLLGRNVKMTVSGVEETDTDGLAECLPHFNVVIEGRRTANGLTADQLLVFSKEDMV 83
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYD 165
L ++G +T L +LST+++ ++ A ++ + + E + + +
Sbjct: 84 RLTNYIMGVPIDTDSPLDEIALSTLKEVASQCMTAAVAELNDFLGRDMGEFITRISAYDN 143
Query: 166 IDYLKKNTNR-LSNEFVTTINMNMTIENV-----------ASSFVLIIPQETLLKTTLIS 213
+ ++ T + ++ TI+ V VL IP
Sbjct: 144 TERVQDLTRVWGMGSPFVIVRLHYTIDGVVDSDAYILASQTMRQVLGIPV-MEEMPMPAI 202
Query: 214 LSSQNKSENQ------------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
K + + I +K + +++ RI ++KD
Sbjct: 203 QEHMGKPKEAVSVQEVAFPEFKYTPLQYDREQIGDDKKKLLDITLDVSVRIGSTVCSVKD 262
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
V++ K GQV+ + + A + ANG+ I ++ G ++ RI + + +
Sbjct: 263 VLSFKEGQVLVLDKQAGSPADVVANGELIGRGDVLVSGDHFGARIIEIVGKRE 315
>gi|189426341|ref|YP_001953518.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
gi|189422600|gb|ACD96998.1| flagellar motor switch protein FliN [Geobacter lovleyi SZ]
Length = 99
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 36/93 (38%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+KS+ + + + + + K +KD++ L G V+ +
Sbjct: 3 DKSDATEAEQEKKNLEFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPLDI 62
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
N K + E V + + +R+ D ++ +++
Sbjct: 63 FVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 95
>gi|268679181|ref|YP_003303612.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
deleyianum DSM 6946]
gi|268617212|gb|ACZ11577.1| surface presentation of antigens (SPOA) protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 103
Score = 70.8 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++V+ + T++ ++ L+ G VI L N K E+
Sbjct: 18 ENLLDISVDFVAELGTTTLTIQRLLKLEKGSVIDLEKPAGESVELYINNKIFGKGEVMVY 77
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 78 EKNLAIRINEILDSK 92
>gi|225849133|ref|YP_002729297.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643402|gb|ACN98452.1| flagellar motor switch protein FliN [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 192
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTY-------QLNVNIDTRINLKKTTLKDVVTLKIGQ 263
I + +S+ + +D L + I I K T++++V L
Sbjct: 76 PIKDQPKIESKEEKKDRFQNLPADIEKKLNLLLDLPITITVEIGSKVMTIEEIVKLSPSS 135
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLHKR 318
V+ L NG + EL +V + I+I + + +++ N + K+
Sbjct: 136 VVDLDRFITEPIDLKVNGVLVAKGELYQVEDQFAIKIKEILTKEERV--NLISKQ 188
>gi|32475801|ref|NP_868795.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
baltica SH 1]
gi|32446344|emb|CAD76172.1| flagellar motor switch protein fliN (fragment) [Rhodopirellula
baltica SH 1]
gi|327540989|gb|EGF27545.1| protein containing Flagellar motor switch FliN [Rhodopirellula
baltica WH47]
Length = 141
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ +++ + + L++V+ L+ G V+ + NG+ I E+ +
Sbjct: 66 DLLGEVEMDLRIELGRTQMRLEEVLRLRAGSVVALDKLAGDPVDIYVNGRLIARGEVLVM 125
Query: 293 GKNYTIRITDRIN 305
N+ +R+T+ +
Sbjct: 126 NDNFCVRVTELVG 138
>gi|27904580|ref|NP_777706.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46395830|sp|Q89AZ3|FLIN_BUCBP RecName: Full=Flagellar motor switch protein FliN
gi|27903977|gb|AAO26811.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 134
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V++ + K T+KD++ L+ ++ + NG I + EL
Sbjct: 57 IMDVPVHLTIEVGTVKITIKDLLELRSKSILVLDKHAGDPLNILVNGYVIATGELVVTEN 116
Query: 295 NYTIRITDRIN 305
Y IRI + I+
Sbjct: 117 KYGIRIINIID 127
>gi|145297436|ref|YP_001140277.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850208|gb|ABO88529.1| lateral flagellar motor switch protein, lfiN [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 125
Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
Q+ V + + + +L +++ ++ G VI + NG+ + E+ V
Sbjct: 47 RQIPVKVTLEVASTEVSLGELMRVEEGAVIELDKLAGETLDVRVNGRLLAKGEVVVVNGK 106
Query: 296 YTIRITDRINFD 307
Y +R+ D I+ +
Sbjct: 107 YGLRLVDVIDTN 118
>gi|254459518|ref|ZP_05072934.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
gi|206676107|gb|EDZ40594.1| conserved hypothetical protein [Rhodobacteraceae bacterium
HTCC2083]
Length = 351
Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 74/265 (27%), Gaps = 14/265 (5%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
L + + L + ++ + ++ E++ L S + +I
Sbjct: 24 LARAADQAFSLALRVNSIRQSRLDLADVVDQIDEDWALFPL-LHDDGSVGVMCLEPACII 82
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS--TTQESSPNLEDF 163
+E R L+ +K LA + ++ + T +
Sbjct: 83 AFVETQTMGRVSA-AVAQPRRLTQTDKALAVAFLEGFLRRFDEALKGAPTAYWTRGYRTE 141
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
+ +L +M + + + L K +
Sbjct: 142 DAVATRHMVVLQLDGAEYRGFDMQIEVVEAERPINM----RLFLPIKEKFAKQNAKKKPT 197
Query: 224 SE-----DLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI-L 277
+ R NV +D + L ++ TL+ G ++P +
Sbjct: 198 KTGVALLESEHTIRRSAMAANVEMDAIMCKVMLPLSELNTLQPGHLVPLPQDAAKQVHLV 257
Query: 278 SANGKEIYSCELGRVGKNYTIRITD 302
++G+ S LG++ +++
Sbjct: 258 DSSGRSAQSVRLGQLHGMRAVKLLH 282
>gi|78777364|ref|YP_393679.1| flagellar motor switch protein [Sulfurimonas denitrificans DSM
1251]
gi|78497904|gb|ABB44444.1| Surface presentation of antigens (SPOA) protein [Sulfurimonas
denitrificans DSM 1251]
Length = 111
Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + + ++ +++ LK G +I NG+ + E+ K
Sbjct: 29 LLDMEVEFISDLGETELSVGEILQLKKGSIIDLKKPAGESVETYVNGRILGRGEVMVYEK 88
Query: 295 NYTIRITDRINF 306
N IRI + ++
Sbjct: 89 NLAIRINEVLDS 100
>gi|242309380|ref|ZP_04808535.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
98-5489]
gi|239523951|gb|EEQ63817.1| flagellar motor switch protein FliN [Helicobacter pullorum MIT
98-5489]
Length = 119
Score = 70.4 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 211 LISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
Q + ++ + V + K LK+++ + G +I
Sbjct: 6 FTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVLFHAELGSTKIALKEILQFEKGSIIDL 65
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ NG+ + E+ KN IR+ + ++ +
Sbjct: 66 QKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEVLDSN 105
>gi|294084393|ref|YP_003551151.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663966|gb|ADE39067.1| flagellar motor switch protein FliN [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 112
Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 40/92 (43%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+S E + R ++V++ + + ++D++ L G VI +
Sbjct: 18 ESAGIDERISKENMRVLENIDVSLTVEVGSAEIKIRDLLRLNEGSVIELDRLAGDPLDIL 77
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
ANG I E+ VG+ + IR ++ + +++
Sbjct: 78 ANGTMIAKGEVVMVGERFGIRFSEIVAPEKRM 109
>gi|251772434|gb|EES53001.1| flagellar motor switch protein FliN [Leptospirillum
ferrodiazotrophum]
Length = 125
Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I R+ + +KD++ L G V+ + N + + ++ V
Sbjct: 47 LLDVPLTISVRVGESRMLIKDLLQLGQGSVVELDKLAGEPMEVLINDQLVARGDVVLVND 106
Query: 295 NYTIRITDRINFDQKSLK 312
Y IR+TD ++ + K
Sbjct: 107 KYGIRLTDIVSPIDRVKK 124
>gi|148253397|ref|YP_001237982.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
gi|146405570|gb|ABQ34076.1| flagellar motor switch protein [Bradyrhizobium sp. BTAi1]
Length = 115
Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 29/77 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + +++ L G V+ + + N + + E+ V
Sbjct: 39 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 98
Query: 293 GKNYTIRITDRINFDQK 309
+ +T+ I D+
Sbjct: 99 EDKLGVTMTEIIKSDRN 115
>gi|119947194|ref|YP_944874.1| surface presentation of antigens (SPOA) protein [Psychromonas
ingrahamii 37]
gi|119865798|gb|ABM05275.1| surface presentation of antigens (SPOA) protein [Psychromonas
ingrahamii 37]
Length = 120
Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V++ + K TLK+++ +K V+ + NGK E+
Sbjct: 46 LNDIPVHVTVEVGAKTVTLKELLEIKNDSVLMLTKENGKALDIKVNGKLFAYGEVVVANG 105
Query: 295 NYTIRITDRINFDQK 309
+Y ++ITD +N D
Sbjct: 106 HYGVKITDIVNKDID 120
>gi|78224291|ref|YP_386038.1| flagellar motor switch FliN [Geobacter metallireducens GS-15]
gi|78195546|gb|ABB33313.1| Flagellar motor switch FliN [Geobacter metallireducens GS-15]
Length = 101
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 31/76 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + K +KDV+ L G V+ + N K + E V +
Sbjct: 22 ILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVNE 81
Query: 295 NYTIRITDRINFDQKS 310
+ IR+ D ++ +++
Sbjct: 82 KFGIRLVDIVSPNERV 97
>gi|87307405|ref|ZP_01089550.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
3645]
gi|87290145|gb|EAQ82034.1| flagellar motor switch protein fliN [Blastopirellula marina DSM
3645]
Length = 212
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + L+DV+ + G V+ + NG+ I E+ +
Sbjct: 135 DLVRDVELDVKIELGRTNMYLEDVLKMNKGSVVSLDKLAGDPVDIYVNGRMIARGEVLVL 194
Query: 293 GKNYTIRITDRINFD 307
N+ +RI + I D
Sbjct: 195 NDNFCVRIAELIVGD 209
>gi|225850287|ref|YP_002730521.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
gi|225646085|gb|ACO04271.1| flagellar motor switch protein FliN [Persephonella marina EX-H1]
Length = 190
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + I L++++ L ++ L NGK I EL V
Sbjct: 105 DLLMDIPLEVSVEIGSTHLPLEEILKLNPNNIVELDKFINQPVDLKVNGKLIAKGELYTV 164
Query: 293 GKNYTIRITDRINFDQKS 310
++ I+IT I ++
Sbjct: 165 EDHFGIKITSIITVQERM 182
>gi|327398388|ref|YP_004339257.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
gi|327181017|gb|AEA33198.1| flagellar motor switch protein FliN [Hippea maritima DSM 10411]
Length = 329
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 29/289 (10%)
Query: 18 LARLTGKLGDKKTIEKI-SSSLGYLYKKF---LPKIFKEKMDLDVDISYTS--CQSGKFS 71
+ L G + K + ++ K L +E + S
Sbjct: 11 IDSLLGGNAEDKQKDNTYGDAINENVSKLFDLLNSSIEEVTKTAFSLEVVSKFIDLNIIQ 70
Query: 72 HIIHSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
SF V + + +S F + + L + +L E +L + L +
Sbjct: 71 KNEISFDGKIVINVDVTTGEKNSKFVVLINKKFASILSDLMLMGPGEAKEELESEDLDAL 130
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK---------KNTNRLSNEFV 181
++ L + +S + + IS ++ + N+ +
Sbjct: 131 KE-LFSQIFGHLSTQVKEAISPFISFEVKEATKEPLEIDSDKLYKSQYDVAIPNIENDLI 189
Query: 182 TTINMNMTIENV-----ASSFVLII----PQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
I+ + ++ + +I P + + + + Q +
Sbjct: 190 DIISPKIELDEIFKQQEPQEETIIEHEEVPFKEVEEELFKEAAPQASKATL--EAPKNL- 246
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+++++ RI K +KD++ LK G +I + + NG
Sbjct: 247 NLIMDIDLDVKIRIGDKNMLIKDILDLKDGSIIELDKNIEEPMDILVNG 295
>gi|163853487|ref|YP_001641530.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218532345|ref|YP_002423161.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240140907|ref|YP_002965387.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
gi|254563417|ref|YP_003070512.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
gi|163665092|gb|ABY32459.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218524648|gb|ACK85233.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240010884|gb|ACS42110.1| flagellar motor switch protein [Methylobacterium extorquens AM1]
gi|254270695|emb|CAX26699.1| flagellar motor switch protein [Methylobacterium extorquens DM4]
Length = 115
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + V + + + + D++ L G V+ + + N + + E+ V
Sbjct: 40 EQVFDVPVVVSAVLGSSRMPIGDLLRLGPGAVLELDRKVGEAIDIFVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFD 307
+ + +T+ I D
Sbjct: 100 EERLGVTMTEIIKND 114
>gi|94495437|ref|ZP_01302017.1| flagellar motor switch [Sphingomonas sp. SKA58]
gi|94424825|gb|EAT09846.1| flagellar motor switch [Sphingomonas sp. SKA58]
Length = 111
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 33/97 (34%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ + S+ + + + V + + L +V+ L G ++ +
Sbjct: 8 PRMERPEDPVSKMTNNRQFKLLADIPVRMSVEVGSTSLRLAEVMDLAEGSIVELDRQADD 67
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG I E+ V Y IRI D + +
Sbjct: 68 LLDIMVNGALIAKGEVVTVNGRYGIRIVDIAATENRL 104
>gi|148976244|ref|ZP_01812968.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
gi|145964338|gb|EDK29593.1| flagellar motor switch protein [Vibrionales bacterium SWAT-3]
Length = 127
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
++ + + + V+I + K L +++ LK G V+ E + NG
Sbjct: 41 GADKEHVSNIS-LLKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKING 99
Query: 282 KEIYSCELGRVGKNYTIRITDRINF 306
+ E+ Y +R+ I
Sbjct: 100 TAFGTGEIVSKNGQYGVRLLSIIKK 124
>gi|258404715|ref|YP_003197457.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
5692]
gi|257796942|gb|ACV67879.1| flagellar motor switch protein FliN [Desulfohalobium retbaense DSM
5692]
Length = 109
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 31/73 (42%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + + + + +KD++ L+ G VI + N + I E V +
Sbjct: 33 VPLQVSAELGTTRILVKDLLQLREGSVIELEKLAGEPLDVFVNSRLIARAEAVVVNEKIG 92
Query: 298 IRITDRINFDQKS 310
+R+TD ++ ++
Sbjct: 93 LRLTDVVSPSERL 105
>gi|83591881|ref|YP_425633.1| flagellar motor switch protein [Rhodospirillum rubrum ATCC 11170]
gi|83574795|gb|ABC21346.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
Length = 115
Score = 70.1 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 27/76 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
Y + V + + + ++ L G V+ + + N + + E+ V
Sbjct: 39 EAVYDIPVQVSAVLGKAHMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 98
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I D+
Sbjct: 99 DDRLGVTMTEIIKSDR 114
>gi|86151489|ref|ZP_01069704.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123915|ref|YP_004065919.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841836|gb|EAQ59083.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017637|gb|ADT65730.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 102
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 78 EKNLAIRINEILDSK 92
>gi|57168489|ref|ZP_00367623.1| flagellar switch protein [Campylobacter coli RM2228]
gi|305432908|ref|ZP_07402066.1| flagellar switch protein FliN [Campylobacter coli JV20]
gi|57020297|gb|EAL56971.1| flagellar switch protein [Campylobacter coli RM2228]
gi|304444062|gb|EFM36717.1| flagellar switch protein FliN [Campylobacter coli JV20]
Length = 102
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 78 EKNLAIRINEILDSK 92
>gi|119714992|ref|YP_921957.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
gi|119535653|gb|ABL80270.1| flagellar motor switch protein FliN [Nocardioides sp. JS614]
Length = 246
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 6/156 (3%)
Query: 154 QESSPNLEDFYDIDYLK--KNTNRLSNEFVTTIN---MNMTIENVASSFVLIIPQETLLK 208
P+L+ + + V I + + +E L++P+ L
Sbjct: 86 AALQPSLDAAATALGARSGAARQVDPDTVVDEIAEPFVIVPLEGSDVVAALLVPEALLAH 145
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ + S + +++ + I + T+++++ L G V+
Sbjct: 146 PADDTPALPTTSAAAPTGDRRGI-EMLHGVDMEVTVEIGRARMTVRELLDLAPGAVLELD 204
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ A L NG+ I E+ + +++ +RIT+ +
Sbjct: 205 RAAGSPADLLVNGRLIARGEVVVIDEDFGLRITEIV 240
>gi|90422463|ref|YP_530833.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB18]
gi|90104477|gb|ABD86514.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB18]
Length = 116
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 218 NKSENQSEDLIDPFA---RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ + A + + V + + K + +++ L G V+ +
Sbjct: 22 GDVGYSDDEQVSRIAADLEAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEA 81
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ N + + E+ V + +T+ I ++
Sbjct: 82 IDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 115
>gi|254461964|ref|ZP_05075380.1| flagellar motor switch protein FliN [Rhodobacterales bacterium
HTCC2083]
gi|206678553|gb|EDZ43040.1| flagellar motor switch protein FliN [Rhodobacteraceae bacterium
HTCC2083]
Length = 99
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + + T+ +++ L G V+ + NG I E+ V
Sbjct: 19 RALENIEVQMSIEVGRTEITIANLLRLNEGSVVELDRLAGEPLDILVNGTMIAKGEVVMV 78
Query: 293 GKNYTIRITDRINFDQKS 310
G+ + IR +D ++ +++
Sbjct: 79 GERFGIRFSDIVDPEKRV 96
>gi|154174584|ref|YP_001408856.1| flagellar motor switch protein [Campylobacter curvus 525.92]
gi|112803666|gb|EAU01010.1| flagellar motor switch protein FliN [Campylobacter curvus 525.92]
Length = 105
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++V+ + ++ +++ + G VI L N + E+
Sbjct: 20 DELMDISVDFIAELGTTTISINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVY 79
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 80 EKNLAIRINEILDSK 94
>gi|114570294|ref|YP_756974.1| hypothetical protein Mmar10_1744 [Maricaulis maris MCS10]
gi|114340756|gb|ABI66036.1| surface presentation of antigens (SPOA) protein [Maricaulis maris
MCS10]
Length = 99
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 37/93 (39%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+++++ + +++ + + V I + K ++ + + G VIP E
Sbjct: 2 AKHQARDDDPQVLECDVSQISSVEVEISVLLGRSKMPIQQFLRMGRGAVIPLDSGEDDQV 61
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ AN I ++ G + IT + ++
Sbjct: 62 WILANNHPIARGDVVIQGDRIAVSITGPADANE 94
>gi|225871942|ref|YP_002753396.1| putative flagellar motor switch protein FliN [Acidobacterium
capsulatum ATCC 51196]
gi|225793597|gb|ACO33687.1| putative flagellar motor switch protein FliN [Acidobacterium
capsulatum ATCC 51196]
Length = 248
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 28/76 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ R ++ +++++ G V+ L K + E+ V
Sbjct: 164 DLLLDIEVDASLRFGSRELAIRELLETGPGDVLELDRHITDPVDLVVGDKIVARGEVVLV 223
Query: 293 GKNYTIRITDRINFDQ 308
N+ +R+T+ +
Sbjct: 224 NGNFGLRVTEVAEPKK 239
>gi|254445213|ref|ZP_05058689.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
DG1235]
gi|198259521|gb|EDY83829.1| flagellar motor switch protein FliN [Verrucomicrobiae bacterium
DG1235]
Length = 82
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + ++ + +++V+ L G VI K L N K I E+ V
Sbjct: 11 LMDVRVKLTVQLGSCRMPMREVMELVPGSVIQLNQEAKDPVGLYINDKLIAYGEVVVVED 70
Query: 295 NYTIRITDRINF 306
N+ I+IT+ N
Sbjct: 71 NFGIKITEMANG 82
>gi|170751437|ref|YP_001757697.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
gi|170657959|gb|ACB27014.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
Length = 110
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + V + + + + D++ L G V+ + + N + + E+ V
Sbjct: 36 EQLFDVPVMVSAVLGSARMPIGDLLRLAPGAVLELDRKVGEAIDVFVNNRLVARGEVVLV 95
Query: 293 GKNYTIRITDRINFD 307
+ +T+ + +
Sbjct: 96 EDRLGVTMTEIVKGE 110
>gi|225569964|ref|ZP_03778989.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
15053]
gi|225161434|gb|EEG74053.1| hypothetical protein CLOHYLEM_06059 [Clostridium hylemonae DSM
15053]
Length = 460
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 36/89 (40%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+ + +L + + + + I K +KDV+ L G ++ L
Sbjct: 367 EQSAEETELQESNLELIMGVPLEVSVEIGRTKKLVKDVLELNKGSLVVLDKLAGEQVDLF 426
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
NG+ I ++ V N+ IRIT+ + +
Sbjct: 427 VNGQCIAQGDVVVVDDNFGIRITEILADE 455
Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 10/178 (5%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI-IHSFKENFVFSQASLSS 90
+ + +D VDI+ Q + + +
Sbjct: 11 IDAIGEILNISLGASATAISTMLDARVDITTPIVQVRNKEEFEFGNLEPAVGVEIIYIEG 70
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + + N V ++E L+G L + Q+ +
Sbjct: 71 LTGSNIMLLKRNDVRVIVEMLMG----MEIPEEEFELDEMNISAICEVKNQMMGASATAL 126
Query: 151 STTQE--SSPNLEDFYDIDYLKKNTN--RLSNEFVTTINMNMTIEN-VASSFVLIIPQ 203
S + + +DI+ ++ + I + I + + S F+ ++P
Sbjct: 127 SELLGKAVNISTPVSFDIESPEQFKEKYFTEESPMVVIGFTLRIADKMESEFMNLMPI 184
>gi|291562033|emb|CBL40849.1| flagellar motor switch protein FliN [butyrate-producing bacterium
SS3/4]
Length = 445
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+S ++ + I I K +KD++ G ++ A L
Sbjct: 351 ESSGSENGEESANQEMLMKVPLEISVEIGRTKKLVKDILEFTQGSLVVLDKMAGEQADLY 410
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
NG+ + ++ V N+ IRITD + D
Sbjct: 411 VNGQCVARGDIVVVEDNFGIRITDIVTRD 439
>gi|57237406|ref|YP_178419.1| flagellar motor switch protein [Campylobacter jejuni RM1221]
gi|86149060|ref|ZP_01067292.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86153799|ref|ZP_01072002.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597432|ref|ZP_01100667.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
84-25]
gi|121613695|ref|YP_001000063.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|153951316|ref|YP_001398601.1| flagellar motor switch protein [Campylobacter jejuni subsp. doylei
269.97]
gi|157414648|ref|YP_001481904.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|167005020|ref|ZP_02270778.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|205355997|ref|ZP_03222765.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218562010|ref|YP_002343789.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|283955776|ref|ZP_06373267.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|2274910|emb|CAA04057.1| flagellar switch protein [Campylobacter jejuni]
gi|57166210|gb|AAW34989.1| flagellar switch protein FliN [Campylobacter jejuni RM1221]
gi|85840418|gb|EAQ57675.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85842760|gb|EAQ59972.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87250239|gb|EAQ73197.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
81-176]
gi|88190493|gb|EAQ94467.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
84-25]
gi|112359716|emb|CAL34502.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|152938762|gb|ABS43503.1| flagellar switch protein FliN [Campylobacter jejuni subsp. doylei
269.97]
gi|157385612|gb|ABV51927.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
81116]
gi|205346121|gb|EDZ32756.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|283792731|gb|EFC31509.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
1336]
gi|284925623|gb|ADC27975.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315057775|gb|ADT72104.1| Flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni S3]
gi|315927846|gb|EFV07171.1| Flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930658|gb|EFV09679.1| flagellar motor switch protein FliN [Campylobacter jejuni subsp.
jejuni 305]
gi|315931571|gb|EFV10537.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
327]
Length = 102
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 18 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 78 EKNLAIRINEILDSK 92
>gi|39654324|pdb|1O6A|A Chain A, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagelar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
gi|39654325|pdb|1O6A|B Chain B, Crystal Structure Of A C-Terminal Fragment Of The Putative
Flagelar Motor Switch Protein Flin (Tm0680) From
Thermotoga Maritima At 1.85 A Resolution
Length = 96
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + TLK V+ G +I + NGK I E+ +
Sbjct: 14 ELLLDIPLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVI 73
Query: 293 GKNYTIRITDRINFDQKS 310
+N+ +RIT+ ++ ++
Sbjct: 74 DENFGVRITEIVSPKERL 91
>gi|91978306|ref|YP_570965.1| flagellar motor switch protein [Rhodopseudomonas palustris BisB5]
gi|91684762|gb|ABE41064.1| Flagellar motor switch FliN [Rhodopseudomonas palustris BisB5]
Length = 116
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 38/109 (34%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
+P L L+ +E + + + + V + + K + +++ L
Sbjct: 8 VPLPDLNSADAPLLADVGYNEEEQTSRVAADLEAVFDVPVQVSAVLGRSKMDVGELLKLG 67
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
G V+ R + N + + E+ V + +T+ I ++
Sbjct: 68 PGAVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAERN 116
>gi|23013050|ref|ZP_00053002.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 94
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 27/78 (34%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
Y ++V + + + ++ L G V+ + L N K + E+
Sbjct: 17 REAVYDVSVELSAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKRVCRAEVVV 76
Query: 292 VGKNYTIRITDRINFDQK 309
V + + IT+ +
Sbjct: 77 VEDHLAVTITEVLKRAAD 94
>gi|320354330|ref|YP_004195669.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
2032]
gi|320122832|gb|ADW18378.1| flagellar motor switch protein FliN [Desulfobulbus propionicus DSM
2032]
Length = 126
Score = 69.7 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 37/106 (34%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
T L+ + + + + + + + + LKD++ + G V
Sbjct: 17 TEETAELLKEEQPQPAGRGDHAPLTRELEFLFDVPLQVSVEVGRARILLKDLLQMGEGYV 76
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ L N + I E +VG + I++T+ ++ +
Sbjct: 77 VELDKLAGEPLDLYVNARLIARGEAVKVGDKFGIKLTEVVSQSDRI 122
>gi|304412522|ref|ZP_07394128.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS183]
gi|307307181|ref|ZP_07586919.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
BA175]
gi|304349164|gb|EFM13576.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS183]
gi|306910420|gb|EFN40851.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
BA175]
Length = 293
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 21/291 (7%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
R + +K ++ L + L + + + + +
Sbjct: 19 RPIMLVQEKLARTRLLQQL-EQLHRPLIDAINNILSPLLRQGHPAVSGSTLTEPRTPVIP 77
Query: 80 NFVFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
++ L + + + L N G + + R+ S E +LAK+
Sbjct: 78 EHCYAWFVLKHQQNTLGYWRIDRCTLDQLASNYYGNTSTPLSSPL-RNPSQSEFRLAKKL 136
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ + L PN + ++ + + N T ++ +
Sbjct: 137 LLSVVDEL-----------PNSTIDTNTLEVELIKGHMPLTVSAVWSFNFTNGSLTPPML 185
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+ + L L+ Q K S DL A L + + + ++ +
Sbjct: 186 FCLT-----EHLLGHLAEQPKKSEISADLPAKLAVWLKSLPIKMQLTLGQHSIPVQSLSQ 240
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
LK G ++P KT + ++ + ++T + +++
Sbjct: 241 LKTGDILPINLYPKTLLSI--GNTTLFHASVHSHEGQMVAKLTQDVYQNEE 289
>gi|283780013|ref|YP_003370768.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
DSM 6068]
gi|283438466|gb|ADB16908.1| surface presentation of antigens (SPOA) protein [Pirellula staleyi
DSM 6068]
Length = 329
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R ++ V + + + LK +V L G +I F + L E+ E +V
Sbjct: 238 RSILRIEVPVRVTLATTQLPLKRIVELGPGSIIQFEKPCDSELSLQVGEHEVAIGEAVKV 297
Query: 293 GKNYTIRITDRINFDQKS 310
G+ + +R+T + ++
Sbjct: 298 GEKFGLRLTSMVMPPERF 315
>gi|254440105|ref|ZP_05053599.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
307]
gi|198255551|gb|EDY79865.1| flagellar motor switch protein FliN [Octadecabacter antarcticus
307]
Length = 98
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 33/78 (42%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + ++ +++ L G V+ + NG +I E+ V
Sbjct: 18 RALENIEVEMSIEVGRTDISISELLRLNEGSVVELNRLAGEPLDILVNGTKIAKGEVVMV 77
Query: 293 GKNYTIRITDRINFDQKS 310
G+ + IR ++ ++ + +
Sbjct: 78 GERFGIRFSEIVDPESRV 95
>gi|302383917|ref|YP_003819740.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
ATCC 15264]
gi|302194545|gb|ADL02117.1| flagellar motor switch protein FliN [Brevundimonas subvibrioides
ATCC 15264]
Length = 109
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + T+ ++ L G V+ + + N + + E+ V
Sbjct: 33 VFDVPVNISAVLGKAHMTVAQLLKLNRGSVLELDRKVGEAIDIFVNNRLVARGEVVVVED 92
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I +
Sbjct: 93 RLGVTMTEIIKTED 106
>gi|157164107|ref|YP_001466298.1| flagellar motor switch protein [Campylobacter concisus 13826]
gi|112800863|gb|EAT98207.1| flagellar motor switch protein FliN [Campylobacter concisus 13826]
Length = 105
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++V+ + ++ +++ + G VI L N + E+
Sbjct: 20 DELMDISVDFIAELGTTTVSINELLKFEAGSVIDLEKPAGESVELYINNRIFGKGEVMVY 79
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 80 EKNLAIRINEILDSK 94
>gi|220925886|ref|YP_002501188.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
2060]
gi|219950493|gb|ACL60885.1| flagellar motor switch protein FliN [Methylobacterium nodulans ORS
2060]
Length = 116
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + V + + + + D++ L G V+ + + N + + E+ V
Sbjct: 41 EQVFDVPVVVSAVLGASRMPIGDLLRLGPGTVLELDRKVGEAIDIYVNNRLVARGEVVLV 100
Query: 293 GKNYTIRITDRINFD 307
+ + +T+ + D
Sbjct: 101 EERLGVTMTEIVKSD 115
>gi|329888111|ref|ZP_08266709.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
gi|328846667|gb|EGF96229.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
Length = 110
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G V+ + + N + + E+ V
Sbjct: 34 VFDVPVNISAVLGKANMSVAQLLKLNKGSVLELDRKVGEAIDIFVNNRLVARGEVVVVED 93
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I +
Sbjct: 94 RLGVTMTEIIKTED 107
>gi|299131951|ref|ZP_07025146.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
gi|298592088|gb|EFI52288.1| flagellar motor switch protein FliN [Afipia sp. 1NLS2]
Length = 119
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 33/102 (32%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ E + I + + V + + K + D++ L G V+
Sbjct: 17 ETEAPPLDQAAYSEEEERSARIASDLEAVFDVPVQVSAVLGRSKMDVSDLLKLGPGTVLE 76
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
R + N + + E+ V + +T+ I ++
Sbjct: 77 LDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 118
>gi|223038755|ref|ZP_03609048.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
gi|222880157|gb|EEF15245.1| flagellar motor switch protein FliN [Campylobacter rectus RM3267]
Length = 118
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V+ + + ++K ++ L++G VI L N + E+
Sbjct: 33 DELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVY 92
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 93 EKNLAIRINEILDSK 107
>gi|170743228|ref|YP_001771883.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
gi|168197502|gb|ACA19449.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
Length = 116
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + V + + + + D++ L G V+ + + N + + E+ V
Sbjct: 41 EQVFDVPVVVSAVLGASRMPVGDLLRLGPGTVLELDRKVGEAIDIFVNNRLVARGEVVLV 100
Query: 293 GKNYTIRITDRINFD 307
+ + +T+ + D
Sbjct: 101 EERLGVTMTEIVKSD 115
>gi|255022967|ref|ZP_05294953.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
Length = 503
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/274 (9%), Positives = 75/274 (27%), Gaps = 28/274 (10%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
+ + ++ V + + + + + + + S+ S N +
Sbjct: 231 STVLSKLLNRKVSLQIPTARVIDSKEFEFN-ERPCLVTSVEFVEGLRSSNTFIISKNAAL 289
Query: 106 TLLENLLGASHETIPQLYNRSLS-TVEKKLAKRTIAQISAVLNQCISTTQESSP-NLEDF 163
+ + ++ L + ++L + + + +++ + T + SP +E
Sbjct: 290 IMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEMLGTKIDISPPTMEFC 349
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSEN- 222
D + + + + + + P L +
Sbjct: 350 NFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAKEMAQLTLGIQAKEVAEK 409
Query: 223 -----------------------QSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ++ + + ++ V ++ K L+ ++
Sbjct: 410 EATTPAEIIEPEKPAEPVHQAVIEEKETLSEMEQILEEIPVTLEVVFGTAKVKLEKFISW 469
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
VI +L+ NG I L RV
Sbjct: 470 CEKDVIILKESMNEPLVLALNGVTIGKGILVRVD 503
>gi|149916493|ref|ZP_01905010.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b]
gi|149809595|gb|EDM69451.1| hypothetical protein RAZWK3B_12402 [Roseobacter sp. AzwK-3b]
Length = 342
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 14/209 (6%)
Query: 97 IGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI----ST 152
+ ++E + + RS++ + + + I ++ +
Sbjct: 84 ARLDAQFLAAVIEVQTMGAVQRGDAPE-RSVTPTDAAMVAPLMDAILKGYDEYLTSGAEK 142
Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
S D + + + I ++ S L++P+
Sbjct: 143 VARSDWRFGDMVEDARTLALALEMPEYDLFRITADLADGAKTGSLSLLLPRA---PRRDP 199
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
S+++++ V +D + L + L G +P
Sbjct: 200 VTSARDRAFAG-----PTLEASALNAPVMLDAVLARLSMPLNKLCALTPGMQLPVPREAL 254
Query: 273 TCAILS-ANGKEIYSCELGRVGKNYTIRI 300
A L A + LG++ +R+
Sbjct: 255 NKAELLGAGQHLVAPVRLGQLNGWRAVRL 283
>gi|315638616|ref|ZP_07893790.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
gi|315481240|gb|EFU71870.1| flagellar switch protein FliN [Campylobacter upsaliensis JV21]
Length = 104
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 20 EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 80 EKNLAIRINEILDSK 94
>gi|144233|gb|AAA23038.1| putative [Caulobacter crescentus CB15]
Length = 101
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G ++ + + N + + E+ V +
Sbjct: 26 VFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 85
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 86 RLGVTMTEIIKDGD 99
>gi|57242711|ref|ZP_00370648.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
gi|57016640|gb|EAL53424.1| flagellar switch protein [Campylobacter upsaliensis RM3195]
Length = 104
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 20 EDILDITVDFVSELGTTNMSVSELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 79
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 80 EKNLAIRINEILDSK 94
>gi|15606680|ref|NP_214060.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
gi|6225365|sp|O67495|FLIN_AQUAE RecName: Full=Flagellar motor switch protein FliN
gi|2983912|gb|AAC07462.1| flagellar switch protein FliN [Aquifex aeolicus VF5]
Length = 112
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 31/79 (39%)
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ + V ++ + TL +++ + IG VI K + NGK I EL
Sbjct: 34 ELIQHFSDIPVEVEVVVGRANKTLGELLAMGIGSVIEIDREPKDLVDIKVNGKLIAKGEL 93
Query: 290 GRVGKNYTIRITDRINFDQ 308
+ ++I + + +
Sbjct: 94 VIIDGKIGVKIKEVVKEQR 112
>gi|148926444|ref|ZP_01810127.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145844607|gb|EDK21713.1| flagellar motor switch protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|307747287|gb|ADN90557.1| Flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
M1]
Length = 105
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 21 EDILDITVDFVSELGTTNMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 80
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 81 EKNLAIRINEILDSK 95
>gi|32490801|ref|NP_871055.1| hypothetical protein WGLp052 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166007|dbj|BAC24198.1| fliN [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 135
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTY---QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
L + S + K + S+ + + + + + K T++D++ LK ++
Sbjct: 28 LKANSEEIKEIDSSKIKNKKLSEDINLILDIPIKMTIELGRTKMTIRDLLLLKRDSIVTL 87
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + E+ + + Y I+I D I +++
Sbjct: 88 DGEIGEPLDILINDYLVARGEVVVMKERYGIKILDIITPEERI 130
>gi|118581838|ref|YP_903088.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
2379]
gi|118504548|gb|ABL01031.1| flagellar motor switch protein FliN [Pelobacter propionicus DSM
2379]
Length = 99
Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 217 QNKSENQSEDLIDPFA-RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ +E ID + + + + K +KD++ L G V+
Sbjct: 1 MSDKPESNETEIDRKNLDFILDIPLQVTVELGRTKLLVKDILQLNQGAVVELTKLAGEPL 60
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N K + E V + + +R+ D ++ +++
Sbjct: 61 DIFVNSKLVARGEAVVVNEKFGVRLVDIVSPNERV 95
>gi|209884355|ref|YP_002288212.1| flagellar motor switch phosphatase FliY [Oligotropha
carboxidovorans OM5]
gi|209872551|gb|ACI92347.1| flagellar motor switch phosphatase FliY [Oligotropha
carboxidovorans OM5]
Length = 119
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
+P ++ + ++ E +S + + + V + + K + D++ L
Sbjct: 12 LPDLNAIEAPPLDQAAYADDEERSARIASDL-EAVFDVPVQVSAVLGRSKMDVSDLLKLG 70
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G V+ R + N + + E+ V + +T+ I ++
Sbjct: 71 PGTVLELDRRVGEAIDIYVNNRLVARGEVVLVEDKLGVTMTEIIKAER 118
>gi|225159020|ref|ZP_03725330.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
gi|224802399|gb|EEG20661.1| flagellar motor switch protein FliN [Opitutaceae bacterium TAV2]
Length = 101
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
S SE+ + V + ++ + ++++V+ L G ++ R
Sbjct: 7 ASDSGSETKVSENDRKAL-DLVLDVKVRVTVQLGSCQLSMREVLALSPGTIVQLAQRATD 65
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
L N K + E+ V +N+ I+IT+ +
Sbjct: 66 PVGLFVNDKLVAYGEVVVVEENFGIKITEIVGGQ 99
>gi|307720981|ref|YP_003892121.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
gi|306979074|gb|ADN09109.1| flagellar motor switch protein FliN [Sulfurimonas autotrophica DSM
16294]
Length = 104
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + T+ +V+ L+ G +I NG+ + E+ K
Sbjct: 21 ILDMEVEFVADLGETELTVAEVLKLEKGSIIDLKKPAGESVESYVNGRILGKGEVMVYEK 80
Query: 295 NYTIRITDRINF 306
N IRI + ++
Sbjct: 81 NLAIRINEVLDS 92
>gi|282890884|ref|ZP_06299401.1| putative type III secretion system protein [Parachlamydia
acanthamoebae str. Hall's coccus]
gi|281499238|gb|EFB41540.1| putative type III secretion system protein [Parachlamydia
acanthamoebae str. Hall's coccus]
Length = 462
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I + + T+K +V L+ G ++ + L NGK + EL +G
Sbjct: 393 IDDIPLVITAEVGRIQMTVKKLVELQPGNLLELNVHPEDGIDLVVNGKRVARGELLSIGD 452
Query: 295 NYTIRITDR 303
+R+ +
Sbjct: 453 ALGVRVLEI 461
Score = 38.9 bits (89), Expect = 0.92, Method: Composition-based stats.
Identities = 24/226 (10%), Positives = 61/226 (26%), Gaps = 34/226 (15%)
Query: 73 IIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEK 132
+ F E +V + +SS + S ++ L+ LL + +
Sbjct: 65 LFSDFGEPYVIREFRISSIEGPVWWVMSQQDLLFLMGFLLKNQTHPEFEADHD------- 117
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
+ +S L + + I + N + ++
Sbjct: 118 -FLNAFVQFLSLELIHAFKSV-----EFDHSLSIQIKDPASQPEGNSLCVDVTAKVS--- 168
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL---NVNIDTRINLK 249
P+ ++ ++S + + + +T V +
Sbjct: 169 ---------PEHSVKGRLILSDQFYKEWKAHYAQANENAMYQTPNADYLEVVVHLEAGKT 219
Query: 250 KTTLKDVVTLKIGQVIPFL----HREKT--CAILSANGKEIYSCEL 289
+ L +G ++ + +L+ NGK + +L
Sbjct: 220 TLKAGEWKKLALGDLLILDSCSLKPGEDAGRVLLTINGKPFFRGKL 265
>gi|255321915|ref|ZP_05363065.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
gi|255301019|gb|EET80286.1| flagellar motor switch protein FliN [Campylobacter showae RM3277]
Length = 118
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V+ + + ++K ++ L++G VI L N + E+
Sbjct: 33 DELMDIGVDFISELGTTTISVKQLLKLEVGSVIDLEKPAGESVELFINNRIFGKGEVMVY 92
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 93 EKNLAIRINEILDSK 107
>gi|86748400|ref|YP_484896.1| flagellar motor switch protein [Rhodopseudomonas palustris HaA2]
gi|86571428|gb|ABD05985.1| Flagellar motor switch FliN [Rhodopseudomonas palustris HaA2]
Length = 116
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 29/76 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + +++ L G V+ R + N + + E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I ++
Sbjct: 100 EDKLGVTMTEIIKAER 115
>gi|115522993|ref|YP_779904.1| flagellar motor switch protein [Rhodopseudomonas palustris BisA53]
gi|115516940|gb|ABJ04924.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
Length = 116
Score = 68.9 bits (167), Expect = 9e-10, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 29/76 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + +++ L G V+ + + N + I E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGTVLELDRKVGEAIDIYVNNRLIARGEVVLV 99
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I ++
Sbjct: 100 EDKLGVTMTEIIAAER 115
>gi|92116306|ref|YP_576035.1| flagellar motor switch protein [Nitrobacter hamburgensis X14]
gi|91799200|gb|ABE61575.1| Flagellar motor switch FliN [Nitrobacter hamburgensis X14]
Length = 116
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 28/76 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + ++ L G V+ R + N + + E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I ++
Sbjct: 100 EDKLGVTMTEIIKAEK 115
>gi|283955174|ref|ZP_06372676.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
414]
gi|283793387|gb|EFC32154.1| flagellar switch protein FliN [Campylobacter jejuni subsp. jejuni
414]
Length = 102
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V+ + + ++ +++ L++G VI L N + E+
Sbjct: 18 EDILDITVDFVSELGTANMSVAELLKLEVGSVIDLEKPAGESVELYINKRIFGKGEVMVY 77
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 78 EKNLAIRINEILDSK 92
>gi|23015636|ref|ZP_00055406.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 108
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 1/108 (0%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
+P L Y + V + + + ++ L
Sbjct: 1 MPDFELNDFKPDGEEQGRGDVPDMPRSARDL-EAVYDIPVQVSAVLGKATMQVNQLLKLG 59
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G V+ + + N + + E+ V + +T+ I D+
Sbjct: 60 RGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDR 107
>gi|295690737|ref|YP_003594430.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
gi|295432640|gb|ADG11812.1| flagellar motor switch protein FliN [Caulobacter segnis ATCC 21756]
Length = 110
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G ++ + + N + + E+ V +
Sbjct: 35 VFDVPVNISAVLGRAHMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 95 RLGVTMTEIIKDGD 108
>gi|16125160|ref|NP_419724.1| flagellar motor switch protein [Caulobacter crescentus CB15]
gi|221233890|ref|YP_002516326.1| flagellar motor switch protein [Caulobacter crescentus NA1000]
gi|462113|sp|Q03593|FLIN_CAUCR RecName: Full=Flagellar motor switch protein FliN
gi|144250|gb|AAA66328.1| flagellar switch protein [Caulobacter crescentus CB15]
gi|13422174|gb|AAK22892.1| flagellar motor switch protein FliN [Caulobacter crescentus CB15]
gi|220963062|gb|ACL94418.1| flagellar motor switch protein FliN [Caulobacter crescentus NA1000]
Length = 110
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G ++ + + N + + E+ V +
Sbjct: 35 VFDVPVNISAVLGRANMSVAQLLQLGQGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 95 RLGVTMTEIIKDGD 108
>gi|39934342|ref|NP_946618.1| flagellar motor switch protein [Rhodopseudomonas palustris CGA009]
gi|192289870|ref|YP_001990475.1| flagellar motor switch protein [Rhodopseudomonas palustris TIE-1]
gi|316935485|ref|YP_004110467.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
DX-1]
gi|39648190|emb|CAE26710.1| putative flagellar motor switch protein [Rhodopseudomonas palustris
CGA009]
gi|192283619|gb|ACE99999.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
TIE-1]
gi|315603199|gb|ADU45734.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
DX-1]
Length = 115
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + +++ L G V+ R + N + + E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSKMDVGELLKLGPGAVLELDRRVGEAIDIYVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFD 307
+ +T+ I D
Sbjct: 100 EDKLGVTMTEIIKAD 114
>gi|269967238|ref|ZP_06181302.1| type III secretion protein [Vibrio alginolyticus 40B]
gi|269828094|gb|EEZ82364.1| type III secretion protein [Vibrio alginolyticus 40B]
Length = 322
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 36/92 (39%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
K N ++ QL V + I + TL+ + L+ G V L
Sbjct: 229 EKETNMNDVNTSEMLTDHQQLPVELTFDIGHQTITLEQLNQLQPGYVFELNQPVSKLVTL 288
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
ANGK I CEL V ++ +R+ + Q+
Sbjct: 289 RANGKIIGECELVNVNEHLGVRVVELFGGTQE 320
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR--EKTCAILSANGKEIY 285
+ L V + + TL + +L++G VI F K AI + + ++
Sbjct: 159 SAALQARHLALPVWLS--LGRTHLTLSEFNSLELGDVIFFDDGYIAKQQAIFQVSNQNLW 216
Query: 286 SCEL 289
C+L
Sbjct: 217 RCQL 220
>gi|78043764|ref|YP_359850.1| flagellar motor switch protein FliN [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995879|gb|ABB14778.1| flagellar motor switch protein FliN [Carboxydothermus
hydrogenoformans Z-2901]
Length = 124
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I R+ + T++ ++ LK G V+ L +G+ E+ + +
Sbjct: 43 LNNIKMEIVARMGTTELTVRQLLALKEGDVLELDKSIGDLIDLFIDGRRFAVGEVVVINE 102
Query: 295 NYTIRITDRINFD 307
Y +RIT + D
Sbjct: 103 MYGVRITGYSDED 115
>gi|237753160|ref|ZP_04583640.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
BAA-430]
gi|229375427|gb|EEO25518.1| flagellar motor switch protein FliN [Helicobacter winghamensis ATCC
BAA-430]
Length = 119
Score = 68.9 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 29/73 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K L +++ + G +I + NG+ I E+ K
Sbjct: 33 LLDMEVVFRSELGSTKIPLSEILQFEKGSIIDLQKPAGESVEIFINGRIIGKGEVMVYEK 92
Query: 295 NYTIRITDRINFD 307
N IR+ + ++ +
Sbjct: 93 NLAIRVNEILDSN 105
>gi|288960027|ref|YP_003450367.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
gi|288912335|dbj|BAI73823.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
Length = 105
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
Y + V I + + ++ L G V+ + + N + + E+ V
Sbjct: 29 EAVYDIPVQISAVLGKSTMQVAQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 88
Query: 293 GKNYTIRITDRINFDQ 308
I +T+ I D+
Sbjct: 89 EDRLGITMTEIIKSDR 104
>gi|56695927|ref|YP_166278.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3]
gi|56677664|gb|AAV94330.1| hypothetical protein SPO1026 [Ruegeria pomeroyi DSS-3]
Length = 388
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/257 (8%), Positives = 72/257 (28%), Gaps = 17/257 (6%)
Query: 61 SYTSCQSGK--FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
S + + + E+ ++ S + V +L+
Sbjct: 51 SVIGATQARRELDELGRAVAEDRLYLMLSGPE-GALGAACMDRACVTAILQQQTMGQVVA 109
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN--LEDFYDIDYLKKNTNRL 176
+ R+ + + + I + + + E + + L
Sbjct: 110 GGFVE-RAFTGTDAAMVAPLIDALLPRARDMVDQPLDRVCLTGYEFCARAESRRALLLLL 168
Query: 177 SNEFVTTINMNMTI--ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
+ ++ I LI+P ++ +
Sbjct: 169 EYDRYRVFDLTAEIAGGKAQGQITLILPDRPEAALEGAEGAAAPQGL--------HLDAA 220
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVG 293
+ ++D I+ + L ++ G ++P + I++ G+++ LG+
Sbjct: 221 FGVVRADLDAVISRIRLPLAAFAGMQPGDLLPLVGLKLDRTEIVTIEGRQVALARLGQCR 280
Query: 294 KNYTIRITDRINFDQKS 310
+R+ +++ ++
Sbjct: 281 GMRAVRLNEKLPDPERI 297
>gi|182412235|ref|YP_001817301.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
gi|177839449|gb|ACB73701.1| flagellar motor switch protein FliN [Opitutus terrae PB90-1]
Length = 84
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 32/74 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + ++ + +++V+ L G V+ L N + + E+ V
Sbjct: 9 VLDVKVKVTVQLGSVQLPMREVLELSPGSVVQLTQHASDPVGLFVNDQLVAYGEVVVVED 68
Query: 295 NYTIRITDRINFDQ 308
N+ I+IT+ + ++
Sbjct: 69 NFGIKITELVGSEK 82
>gi|34498456|ref|NP_902671.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472]
gi|34104311|gb|AAQ60670.1| hypothetical protein CV_3001 [Chromobacterium violaceum ATCC 12472]
Length = 280
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 14/200 (7%)
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
L++ +L+ GA + E++L + ++ L + I
Sbjct: 88 FDRGLLLGILDYRFGARAGASDGELPAE-TETERRLGRTLAERLLPRLARAIH------- 139
Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
L D + ++ + ++++ + + + L +LS Q
Sbjct: 140 QLSRASLPDASRPQPLGYPDQAAWQLEVDLSDGDAKLGTLRLRLNAAAFDALLQNLSGQR 199
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+ D FA + + +D R+ ++ L V+ L+ G V+P + A +
Sbjct: 200 PRLLGNPD-SANFAERVR---IRLDARLLEQELPLGAVLDLRPGSVLPVAMQPH--AEVC 253
Query: 279 ANGKEIYSCELGRVGKNYTI 298
A G ++ ++ +
Sbjct: 254 AQGSPLFRAQVVERQGKLCL 273
>gi|83945474|ref|ZP_00957821.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83851050|gb|EAP88908.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 105
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 32/91 (35%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+SL++ K + + + V I + K + + + G VIP E
Sbjct: 5 VSLTAYGKGHAPDSNSDAHSMSQLGAVQVEISVLLGRSKLPIHQFLRMGRGAVIPLDAAE 64
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ AN I E+ G + ITD
Sbjct: 65 HDEVWILANNHPIARGEIIIQGDRVAVSITD 95
>gi|319403949|emb|CBI77537.1| Flagellar motor switch protein fliY [Bartonella rochalimae ATCC
BAA-1498]
Length = 170
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + ++ L G VI + + NG+ I E+ +
Sbjct: 94 ELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVL 153
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I+
Sbjct: 154 EDDPSRFGVSLTEIIDK 170
>gi|149184186|ref|ZP_01862504.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
gi|148831506|gb|EDL49939.1| flagellar motor switch protein [Erythrobacter sp. SD-21]
Length = 96
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 28/71 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++V + + K L+DV+ L VI + NGK I E+ G
Sbjct: 11 IQDIDVRLTVELGRKSMRLRDVLALGESSVIELDRLTDEPLDMFVNGKLIARGEVIAQGN 70
Query: 295 NYTIRITDRIN 305
+ IR+ + +
Sbjct: 71 RFAIRVLEIVG 81
>gi|116328051|ref|YP_797771.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116331496|ref|YP_801214.1| endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116120795|gb|ABJ78838.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116125185|gb|ABJ76456.1| Endoflagellar motor switch protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 174
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
L + + ++ + + +N+ + + +KDV L G
Sbjct: 68 ISAALGPSPTPSAPRSATRQSASTQSTNL-NLLMDVNLALTVELGRTNMFIKDVNGLNEG 126
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
V+ + ANG + +L + Y I+IT+ ++ ++
Sbjct: 127 IVVELDKNVGEDLDILANGHLVGRGKLVAMDDFYGIQITEIVDQSRRL 174
>gi|254228802|ref|ZP_04922225.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262396479|ref|YP_003288332.1| putative flagellar motor switch protein [Vibrio sp. Ex25]
gi|151938749|gb|EDN57584.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262340073|gb|ACY53867.1| putative flagellar motor switch protein [Vibrio sp. Ex25]
Length = 272
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/301 (14%), Positives = 88/301 (29%), Gaps = 42/301 (13%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
P+ I L + I + L L + + V+ S TS +F
Sbjct: 8 PISDIQLLDVELLGKPIHIIREKLEGLISESCSSLTIELQNWLSTSKVEASLTSVDLHRF 67
Query: 71 SHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTV 130
+ I + + F+ ++ +I L + GAS E L+
Sbjct: 68 TPIKMDKDQTSTYQHQE----GGMVFVHGDSHTLIKLADRFYGASTERSATT----LTAS 119
Query: 131 EKKLAKRTIAQISAVLN--QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
+ +L +R I L + + + +N+
Sbjct: 120 DLRLQERISRIIIGWLAPGEMW-------------------EMGEYEAPRGIGINVQLNI 160
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
++ S L + + DL PF R V ++ ++
Sbjct: 161 AFDDHQGSIHLKLDSHLIQTLIEQL------ELQPDTDLYQPFCRSLETTPVRLNVVLSK 214
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
KK L DVV L+ ++P +S + +++ + + N D+
Sbjct: 215 KKMPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL----IFNPDK 268
Query: 309 K 309
+
Sbjct: 269 E 269
>gi|144901008|emb|CAM77872.1| Surface presentation of antigens (SPOA) protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 90
Score = 68.5 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 26/78 (33%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
Y +NV + + ++ L G V+ + L N K I E+
Sbjct: 13 QEAVYGVNVECIAVLGTANLPIAQLLKLGRGAVVELDRKVNDPVDLYVNRKHIARAEVVV 72
Query: 292 VGKNYTIRITDRINFDQK 309
V + + +T+ +
Sbjct: 73 VEDHLAVTVTEVLKRAAD 90
>gi|319898626|ref|YP_004158719.1| flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
gi|319402590|emb|CBI76135.1| Flagellar motor switch protein fliY [Bartonella clarridgeiae 73]
Length = 171
Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ V + + + ++ L G VI + + NG+ I E+
Sbjct: 94 KELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIV 153
Query: 292 VGK---NYTIRITDRINF 306
+ + I +T+ I+
Sbjct: 154 LEDDPSRFGISLTEIIDK 171
>gi|288960009|ref|YP_003450349.1| flagellar motor switch protein [Azospirillum sp. B510]
gi|288912317|dbj|BAI73805.1| flagellar motor switch protein [Azospirillum sp. B510]
Length = 100
Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%)
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ D + V I I ++D++ L G V+ K + G
Sbjct: 10 ASDPNDGDASSFAIGDAPVEIKVVIGTAMLRVRDLLKLGRGAVVELDRHLKDPTDVYVEG 69
Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQK 309
+ E+ + + +TD I ++
Sbjct: 70 VLVARGEVAIIDDKIGVTLTDFIKSSRE 97
>gi|149191148|ref|ZP_01869406.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
gi|148834986|gb|EDL51965.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
Length = 127
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I + K L +++ LK G V+ E + NG + E+
Sbjct: 53 LKSIPVDITVEVARKTLILDELLNLKAGSVVMLEKHEGDPVDIKINGTAFGTGEIVSKNG 112
Query: 295 NYTIRITDRINF 306
Y +R+ I
Sbjct: 113 QYGVRLLSIIKK 124
>gi|83309599|ref|YP_419863.1| flagellar motor switch protein [Magnetospirillum magneticum AMB-1]
gi|82944440|dbj|BAE49304.1| Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magneticum AMB-1]
Length = 108
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 1/108 (0%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
+P L Y + V + + + ++ L
Sbjct: 1 MPDFELNDFKPEVEEQGRGDVPDMPRSARDL-EAVYDIPVQVSAVLGKATMQVNQLLKLG 59
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G V+ + + N + + E+ V + +T+ I D+
Sbjct: 60 RGAVVELDRKVGEAIDIYVNNRLVARGEVVVVEDRLGVTMTEIIKTDR 107
>gi|126176170|ref|YP_001052319.1| hypothetical protein Sbal_3982 [Shewanella baltica OS155]
gi|125999375|gb|ABN63450.1| conserved hypothetical protein [Shewanella baltica OS155]
Length = 293
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 21/291 (7%)
Query: 20 RLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE 79
R + +K ++ L + L + + + + +
Sbjct: 19 RPIMLVQEKLARTRLLQQL-EQLHRPLIDAINNILSPLLRQGHPAVSGSTLTEPRTPVVP 77
Query: 80 NFVFSQASLSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRT 138
++ L + + + L N G + + R+ S E +LAK+
Sbjct: 78 EHCYAWFVLKHQQNTLGYWRIDRCTLDQLASNYYGNTSTPLSSPL-RNPSQSEFRLAKKL 136
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ + L PN + ++ + + N ++ +
Sbjct: 137 LLSVVDEL-----------PNSTIDTNTLEVELIKGHMPLTVSAVWSFNFINGSLTPPML 185
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+ + L L+ Q K S DL A L + + + ++ +
Sbjct: 186 FCLT-----EHLLGHLAEQPKKSEISADLPTKLAVWLKSLPIKMQLTLGQHSIPVQSLSQ 240
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
LK G ++P KT + ++ + ++T + +++
Sbjct: 241 LKTGDILPINLYPKTLLSI--GNTTLFHASVHSHEGQMVAKLTQDVYQNEE 289
>gi|222823212|ref|YP_002574785.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
gi|222538433|gb|ACM63534.1| flagellar motor switch protein FliN [Campylobacter lari RM2100]
Length = 98
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 31/75 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++V+ + + ++++++ L++G VI L N + E+
Sbjct: 13 EDILDISVDFVSELGTTNMSVRELLKLEVGSVIDLEKPAGESVELYLNKRIFGKGEVMVY 72
Query: 293 GKNYTIRITDRINFD 307
KN IRI + ++
Sbjct: 73 EKNLAIRINEILDSK 87
>gi|150388449|ref|YP_001318498.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
QYMF]
gi|149948311|gb|ABR46839.1| flagellar motor switch protein FliN [Alkaliphilus metalliredigens
QYMF]
Length = 143
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 45/131 (34%), Gaps = 1/131 (0%)
Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA 232
E + + I + + P K ++ + Q + S+ + + +
Sbjct: 4 DMISQEEIDALLKGSTNISSDNDRIDEVQPSTKQSKVSVQPIQFQAFEQVSSKGVPENIS 63
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + +V+ G +I + NG+ + E+ +
Sbjct: 64 T-IQDVPLSVTVELGRTVKKISEVLEFGPGTIIEVEKLVGEHVDILVNGQYVAKGEVVVI 122
Query: 293 GKNYTIRITDR 303
+NY RIT+
Sbjct: 123 DENYGTRITEI 133
>gi|85713558|ref|ZP_01044548.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85699462|gb|EAQ37329.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 116
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 28/76 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + + + ++ L G V+ R + N + + E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I ++
Sbjct: 100 EDKLGVTMTEIIKAEK 115
>gi|307293812|ref|ZP_07573656.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
L-1]
gi|306879963|gb|EFN11180.1| flagellar motor switch protein FliN [Sphingobium chlorophenolicum
L-1]
Length = 112
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 28/78 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + L +V+ L G V+ + + NG I E+ V
Sbjct: 28 RLLADIPVRMSVEVGSTSLRLAEVMDLAEGSVVELDRQADDLLDIMVNGALIAKGEVVTV 87
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRI + + +
Sbjct: 88 NGRYGIRIVEIAAAESRL 105
>gi|319406966|emb|CBI80603.1| Flagellar motor switch protein fliY [Bartonella sp. 1-1C]
Length = 170
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + ++ L G VI + + NG+ I E+ +
Sbjct: 94 ELIMSIPVEVQVVLGSTTMPVATLMDLGRGAVITLDKQIGDPIDIVVNGRIIARGEVIVL 153
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I+
Sbjct: 154 EDDPSRFGVSLTEIIDK 170
>gi|167644980|ref|YP_001682643.1| flagellar motor switch protein [Caulobacter sp. K31]
gi|167347410|gb|ABZ70145.1| flagellar motor switch protein FliN [Caulobacter sp. K31]
Length = 111
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + ++ ++ L G ++ + + N + + E+ V +
Sbjct: 35 VFDVPVNISAVLGRAHMSVAQLLQLSAGSILELDRKVGEAIDIYVNNRLVARGEVVVVDE 94
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 95 RLGVTMTEIIKDGD 108
>gi|114797692|ref|YP_760111.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
15444]
gi|114737866|gb|ABI75991.1| flagellar motor switch protein FliN [Hyphomonas neptunium ATCC
15444]
Length = 89
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 7/80 (8%), Positives = 32/80 (40%)
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ + V +D + + +++++ L G+++ + + +G+ + +L
Sbjct: 8 ALEKMLMDVPVRVDVVLGEARIPMEELMALSPGEIVALERQTNEPVDIYVSGRLVARGKL 67
Query: 290 GRVGKNYTIRITDRINFDQK 309
+ +++ I+ +
Sbjct: 68 VVTDGQLGVTLSEIIDSRPE 87
>gi|291286233|ref|YP_003503049.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290883393|gb|ADD67093.1| surface presentation of antigens (SPOA) protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 95
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 34/77 (44%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++ +ID + K +++++ + G ++ F NGK + E+
Sbjct: 8 KNEFGEVLFDIDVELGRKMVKVRELLNWEKGTILKFTKTSGEPVDFLVNGKPLALGEIMV 67
Query: 292 VGKNYTIRITDRINFDQ 308
+ + + +RIT+ + +
Sbjct: 68 LDERFAVRITEILEKED 84
>gi|75674794|ref|YP_317215.1| flagellar motor switch protein [Nitrobacter winogradskyi Nb-255]
gi|74419664|gb|ABA03863.1| surface presentation of antigens (SPOA) protein [Nitrobacter
winogradskyi Nb-255]
Length = 116
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 28/76 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + + + ++ L G V+ R + N + + E+ V
Sbjct: 40 EAVFDVPVQVSAVLGRSRMDVGALLKLGPGSVLELDRRVGEAIDIYVNNRLVARGEVVLV 99
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I ++
Sbjct: 100 EDKLGVTMTEIIKAEK 115
>gi|312883879|ref|ZP_07743596.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368337|gb|EFP95872.1| type III secretion system protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 321
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
++ + QL V + + + TL+ + +L+ G + +
Sbjct: 230 ETNMNDITNNEALTDH-QQLPVELTFDVGQQTITLEQLNSLQPGFTFELNQPISSPVTMR 288
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
ANGK I CEL + + +R+ + + Q+
Sbjct: 289 ANGKIIGECELVNINERLGVRVIELLGETQE 319
>gi|148554379|ref|YP_001261961.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
gi|148499569|gb|ABQ67823.1| flagellar motor switch protein FliN [Sphingomonas wittichii RW1]
Length = 107
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 29/78 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + + + + L +++ L G V+ + + NG + E+ V
Sbjct: 23 RLLADIPLRLSVEVGSTSLRLAELMDLNAGSVVELDRQANELLDIMVNGTLVAKGEVVTV 82
Query: 293 GKNYTIRITDRINFDQKS 310
+ IR+ D + D +
Sbjct: 83 NGKFGIRVVDIVAADARL 100
>gi|315452517|ref|YP_004072787.1| flagellar motor switch protein FliN [Helicobacter felis ATCC 49179]
gi|315131569|emb|CBY82197.1| flagellar motor switch protein (FliN) [Helicobacter felis ATCC
49179]
Length = 139
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + L +V+ + G VI NG+ I E+
Sbjct: 55 KGLLDMEVTFMAELGSTSIPLGEVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVY 114
Query: 293 GKNYTIRITDRINFD 307
KN IR+ + ++ +
Sbjct: 115 EKNLAIRLNEVLDSN 129
>gi|197104325|ref|YP_002129702.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
HLK1]
gi|196477745|gb|ACG77273.1| flagellar motor switch protein FliN [Phenylobacterium zucineum
HLK1]
Length = 111
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + V+I + ++ ++ L G V+ + + N + + E+ V +
Sbjct: 35 VFDVPVSISAVLGRSTLSVAQLLQLAQGSVLELDRKVGEAIDIYVNNRLVARGEVVIVDE 94
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 95 RLGVTMTEIIKDGD 108
>gi|45657709|ref|YP_001795.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600949|gb|AAS70432.1| flagellar motor switch protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 178
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+N+ + + +KDV L G V+ + ANG+ + +L +
Sbjct: 101 NLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM 160
Query: 293 GKNYTIRITDRINFDQKS 310
Y I+IT+ ++ ++
Sbjct: 161 DDFYGIQITEIVDQSRRL 178
>gi|266621917|ref|ZP_06114852.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
gi|288866390|gb|EFC98688.1| putative surface presentation of antigens protein [Clostridium
hathewayi DSM 13479]
Length = 318
Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 90/303 (29%), Gaps = 48/303 (15%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
L + V + + F + ++ + ++
Sbjct: 24 LASLLGRNARAAVT-ELGETDRETLTEYLPHF-NVVIEAERTAEGLRVPQLYVFDRADML 81
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEK-------KLAKRTIAQISAVLNQCISTTQESSP 158
+ ++G T L +LST+++ + + + + ++
Sbjct: 82 KISNFIMGLPVNTESPLDEIALSTLKEVASQCMGAAMENLGDFLGREMGEVLTRVTAFDS 141
Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
I K + I ++ IE V S+ VL I E L + I + Q
Sbjct: 142 AERILDTISLWDKVPHL------LLIRFHLEIEGVLSAEVLGIATEELQEIFGIPVMGQE 195
Query: 219 KSENQSEDLID---------------------------------PFARKTYQLNVNIDTR 245
+ ++ + +K + +++ R
Sbjct: 196 PAAEEAVHTEELPFRKKEKTVAFREVSFPEFKYVPLDNQVDHIGEERKKLRDITLDVSVR 255
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
I ++KD++ L+ GQ++ + + A + NGK I ++ + RI + I
Sbjct: 256 IGGTVCSVKDILALQKGQILTLDKQAGSPADVVVNGKLIGKSDVLVTDDKFAARIIEIIG 315
Query: 306 FDQ 308
Sbjct: 316 KRD 318
>gi|163784306|ref|ZP_02179216.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159880424|gb|EDP74018.1| chemotaxis protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 193
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 34/99 (34%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ E++ D + + I + + L+D++ L V+
Sbjct: 87 LQEQKTQGETPVFEEVKDEKLELLMDIPLEISVEVGGRDILLEDILKLNPNTVLELDKYI 146
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NGK + EL N+ ++IT + ++
Sbjct: 147 NEPVDIKINGKLVAKGELYTAENNFGVKITSIVTVQERM 185
>gi|224417683|ref|ZP_03655689.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|253827033|ref|ZP_04869918.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313141227|ref|ZP_07803420.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
98-5491]
gi|253510439|gb|EES89098.1| flagellar motor switch protein [Helicobacter canadensis MIT
98-5491]
gi|313130258|gb|EFR47875.1| flagellar motor switch protein FliN [Helicobacter canadensis MIT
98-5491]
Length = 119
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 211 LISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
Q + ++ + V + K L +++ + G +I
Sbjct: 6 FTLAKIQAPKQEDLARYLEGIMNNYGGLLDMKVAFHAELGSAKIPLLEILRFEKGSIIDL 65
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ NG+ + E+ KN IR+ + ++ +
Sbjct: 66 QKPAGESVEIYINGRIVGKGEVMVYEKNLAIRVNEILDSN 105
>gi|239787545|emb|CAX84014.1| Flagellar motor switch/type III secretory pathway protein
[uncultured bacterium]
Length = 117
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
Y++ V + + + ++ L G V+ ++AN + I E+
Sbjct: 40 MEAVYEVPVEVTAVLGTASLQVSQILKLGRGAVVELDRIVGEPVDINANNRLIARGEVVV 99
Query: 292 VGKNYTIRITDRINFD 307
V I+ITD I +
Sbjct: 100 VEDRLAIQITDIIRSN 115
>gi|255030382|ref|ZP_05302333.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28]
Length = 199
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 6/155 (3%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF 180
L + SP + + N+
Sbjct: 167 LKDSFKSVHPISPEIVNIET--NPALLRVTSPNDM 199
>gi|225181580|ref|ZP_03735021.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
1]
gi|225167688|gb|EEG76498.1| flagellar motor switch protein FliN [Dethiobacter alkaliphilus AHT
1]
Length = 141
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 36/78 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + + + DVV+L G ++ F ++ NGK I E+ V
Sbjct: 60 ERILDIPLRVSVSLGKTEKPILDVVSLAPGAIVDFDRNVGEPVDITLNGKLIARGEVVVV 119
Query: 293 GKNYTIRITDRINFDQKS 310
G+++ +RI+ I Q+
Sbjct: 120 GEHFGVRISQIITPQQRI 137
>gi|296274017|ref|YP_003656648.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098191|gb|ADG94141.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
Length = 293
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/285 (14%), Positives = 91/285 (31%), Gaps = 24/285 (8%)
Query: 38 LGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ--ASLSSWSSNF 95
+ L ++ + T C++ + + V + SS +
Sbjct: 1 MASDLSNILRDELSNTLEQLLS-QPTKCENVEKADFSKVDSSQCVEIDVKFEFKNISSTW 59
Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL-NQCISTTQ 154
+ +LG + + + + + + + IS + Q
Sbjct: 60 NFFIPTSSAARFEYLMLGGTGDLKEHIDDEITDAINE-IVSNICGSISTSVNAQGFPDIS 118
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV-LIIPQETLLKTTLIS 213
+ I+ K N N F +N++ I V SF +I+P + +
Sbjct: 119 GLKHEILGSKIIECNGKENN--DNTFSFKLNLDNKISEVIISFDDVILPFLSEITGKEAD 176
Query: 214 LSSQNKSENQ---------------SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+S N+S +Q S++ + + + + R+ K LKD++
Sbjct: 177 AASNNESSSQGFPSLPTSNGIDSLLSDESSKNLK-LLFDIKLKLSVRLGTKLFLLKDILK 235
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
IG++I + NG +I E V + ++I +
Sbjct: 236 WDIGEIIELEQMVNEPLDILVNGIKIGEGEAVIVEGKFGLKIKNI 280
>gi|296282258|ref|ZP_06860256.1| flagellar motor switch protein FliN [Citromicrobium bathyomarinum
JL354]
Length = 118
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V + + K L++++ L ++ + NG+ I E+ G
Sbjct: 11 IQEIDVRLTVELGRKNLPLREIMALGENSLVELDRLTDEPLDIMVNGRLIARGEVVAQGN 70
Query: 295 NYTIRITD 302
+ IRI +
Sbjct: 71 RFAIRILE 78
>gi|319405390|emb|CBI79009.1| Flagellar motor switch protein fliY [Bartonella sp. AR 15-3]
Length = 170
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + ++ L G VI + + NG+ I E+ +
Sbjct: 94 ELIMSIPVEVQVVLGSTTMPVSTLMDLGRGAVITLDKQIGDPIDIVVNGRVIARGEVIVL 153
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I+
Sbjct: 154 EDDPSRFGVSLTEIIDK 170
>gi|294013061|ref|YP_003546521.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
UT26S]
gi|292676391|dbj|BAI97909.1| flagellar motor switch protein FliN/FliY [Sphingobium japonicum
UT26S]
Length = 112
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 28/78 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + V + + L +V+ L G V+ + + NG I E+ V
Sbjct: 28 RLLADIPVRMSVEVGSTSLRLAEVMDLSEGSVVELDRQADDLLDIMVNGALIAKGEVVTV 87
Query: 293 GKNYTIRITDRINFDQKS 310
Y IRI + + +
Sbjct: 88 NGRYGIRIVEIAAAESRL 105
>gi|34557441|ref|NP_907256.1| flagellar motor switch protein [Wolinella succinogenes DSM 1740]
gi|34483157|emb|CAE10156.1| PUTATIVE FLAGELLAR MOTOR SWITCH PROTEIN [Wolinella succinogenes]
Length = 117
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 28/73 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + K TL +++ + G +I NG+ I E+ K
Sbjct: 34 LLDMEVIFTAELGATKITLAEILKFEKGSIIDLQKPAGESVETFVNGRIIGKGEVMVYEK 93
Query: 295 NYTIRITDRINFD 307
N IRI + ++ +
Sbjct: 94 NLAIRINEILDSN 106
>gi|149908777|ref|ZP_01897437.1| flagellar motor switch protein [Moritella sp. PE36]
gi|149808051|gb|EDM67992.1| flagellar motor switch protein [Moritella sp. PE36]
Length = 122
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 31/70 (44%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + +++ + K + D++ L G VI L NG+ + + E+ V
Sbjct: 45 HNIPIDVTLEVASTKLVIGDLMMLSSGAVIELDKLADEPLDLKVNGQLLATAEVVVVNGK 104
Query: 296 YTIRITDRIN 305
Y +++ D ++
Sbjct: 105 YGVKLIDVVD 114
>gi|114777575|ref|ZP_01452556.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
gi|114552046|gb|EAU54563.1| flagellar protein [Mariprofundus ferrooxydans PV-1]
Length = 98
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 29/94 (30%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + +E + + I + K L + L G VI
Sbjct: 1 MSDTATATEHPQTANLEAIMHVPLEISVELGRIKLPLHTIARLNRGMVIEMNKEANAEVQ 60
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ ANG E+ G +RIT+ + +
Sbjct: 61 ILANGSIFAKGEVVSTGDKLGVRITEIVPASARI 94
>gi|85710187|ref|ZP_01041252.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
gi|85688897|gb|EAQ28901.1| flagellar motor switch protein [Erythrobacter sp. NAP1]
Length = 102
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 32/73 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ + V + + + LKDV+ + G V+P ++ANG+ + E+
Sbjct: 9 KRFGDVTVRLSVELGRTEMPLKDVLAIDEGSVVPLNRLTDELLDVTANGRVVARGEVIAQ 68
Query: 293 GKNYTIRITDRIN 305
+ +RI + +
Sbjct: 69 DGRFALRIVELVG 81
>gi|87308873|ref|ZP_01091012.1| probable flagellar motor switch protein fliN [Blastopirellula
marina DSM 3645]
gi|87288584|gb|EAQ80479.1| probable flagellar motor switch protein fliN [Blastopirellula
marina DSM 3645]
Length = 309
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/312 (10%), Positives = 98/312 (31%), Gaps = 54/312 (17%)
Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGK---FSHIIHSFKENFVFSQASLSSWSSN-- 94
+++ F K+ +V +C+ GK + + + ++S+
Sbjct: 3 EQFRRMAD--FTAKLKDEV---LAACEVGKDEASEALSRALGNPMTLAVGEAGAYSAAVA 57
Query: 95 -------FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ I L+ G + + S +A ++ L
Sbjct: 58 PEEAGLAIVLKVDLEAAIVLIPASSGLLPDWYAEPDATGESK---------LATLAQELG 108
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + + + + + +++ +T EN +S +L+ P
Sbjct: 109 MLLLPEEFMPLDFKAGKIENIRAGLKKAGCTDAAACVSLPLTGENGSSEALLVWPAPQAD 168
Query: 208 KTTLISLSSQNKSENQS----------------------------EDLIDPFARKTYQLN 239
+ + Q ++ + + +A+ ++
Sbjct: 169 AIFKSTAAPQQPTDTPKNDPNLAVEVKPAPAPTPATPPPRTEPVGQRNLPHYAKSLLKIA 228
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ ++ + KK ++++ L IG +I F + L I E ++G + +R
Sbjct: 229 IEVNVTLASKKMRVREITELGIGSIIQFDKSCEESIDLEVGEHRIAQGEAVKIGDKFGMR 288
Query: 300 ITDRINFDQKSL 311
+T+ + +++ +
Sbjct: 289 VTNVLLPEERFI 300
>gi|294828018|ref|NP_712250.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
str. 56601]
gi|293385864|gb|AAN49268.2| flagellar motor switch protein [Leptospira interrogans serovar Lai
str. 56601]
Length = 178
Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+N+ + + +KDV L G V+ + ANG+ + +L +
Sbjct: 101 NLLMDVNLALTVELGRTNMFIKDVNGLNEGVVVELDKNVGEDLDILANGRLVGRGKLVAM 160
Query: 293 GKNYTIRITDRINFDQKS 310
Y I+IT+ ++ ++
Sbjct: 161 DDFYGIQITEIVDQSRRL 178
>gi|238762374|ref|ZP_04623345.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638]
gi|238699359|gb|EEP92105.1| Flagellar motor switch protein [Yersinia kristensenii ATCC 33638]
Length = 291
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 71/206 (34%), Gaps = 16/206 (7%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHE--TIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
N L++ +L + G + E T+ L N + E++L + +I+ ++
Sbjct: 85 GNIAFDIDRTLLLNILNDYYGLTKEKSTVSVLDNTPKTQTEERLKNKLSIEIADLILN-- 142
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
P + I + ++ + F L+I + +
Sbjct: 143 ------QPVFGEPLVIKNNNSTPIVS---WSYQMDFLLKDYENVG-FTLLIDTPNVDRLL 192
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + + F + QL + + ++++ TL D++ +K G +IP
Sbjct: 193 NTLHTGIKEEKKTQTLSVTQFNQLVSQLPIQLTSQLSCSDLTLFDLMAIKEGDIIPTSLP 252
Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
E+ + + ++S +
Sbjct: 253 ERFP--VFIGKQPLFSAVVTESRGKL 276
>gi|56384263|gb|AAV85781.1| FliN [Azospirillum brasilense]
Length = 109
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 27/76 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
Y + V I + + ++ L G V+ + + N + + E+ V
Sbjct: 33 EAVYDIPVQISAVLGKSTMQVSQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 92
Query: 293 GKNYTIRITDRINFDQ 308
I +T+ I D+
Sbjct: 93 EDRLGITMTEIIKSDR 108
>gi|269960159|ref|ZP_06174535.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835130|gb|EEZ89213.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 272
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
P+ I L + I + SL L + + + ++ + + + +F
Sbjct: 8 PISDIKLLDVELLGKPIHIIREKLESLISESCSSLTNELQNWLSSNKIEANLVAVELHRF 67
Query: 71 SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
S + + +I +I L + GA+ E
Sbjct: 68 S--------PTLLDKDQTSTYQHQDGGMVYIHGDAQALIKLADRFYGAATERTSTS---- 115
Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
L+ + +L +R I L + +
Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QPCEYETPRGIGLHA 156
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+++ E+ + L + + + + DL PF R V ++
Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDADLYQPFCRSLESTPVRLNV 210
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ K L DVV L+ ++P +S + ++S + +
Sbjct: 211 VLSKKTMALSDVVGLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264
Query: 305 NFDQK 309
N D++
Sbjct: 265 NPDKE 269
>gi|183220986|ref|YP_001838982.1| flagellar motor switch protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911081|ref|YP_001962636.1| endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167775757|gb|ABZ94058.1| Endoflagellar motor switch protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779408|gb|ABZ97706.1| Flagellar motor switch protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 172
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 31/74 (41%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + +KDV+ L G V+ + ANGK + +L + Y
Sbjct: 93 DVTLQLTIELGRTTMFIKDVLQLSEGTVVELDKNIGEELDILANGKLVGRGKLIVLDDYY 152
Query: 297 TIRITDRINFDQKS 310
++IT ++ ++
Sbjct: 153 GVQITQIVDPMERL 166
>gi|330447938|ref|ZP_08311586.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492129|dbj|GAA06083.1| flagellar motor switch protein FliN [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 121
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 32/78 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ V + + + +L +++ G VI + NG + E+ + +
Sbjct: 44 KKIPVTVTLEVASTEISLGELMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVINEK 103
Query: 296 YTIRITDRINFDQKSLKN 313
Y +R+ D ++ ++ N
Sbjct: 104 YGLRLIDVVDSPLNTMDN 121
>gi|103488405|ref|YP_617966.1| flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
gi|98978482|gb|ABF54633.1| Flagellar motor switch FliN [Sphingopyxis alaskensis RB2256]
Length = 111
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+++ + + TL +++ L G VI + ANG I E+ V
Sbjct: 27 DLLAGVSLRVSVEVGSTSMTLAELLALGEGSVIELDRAATDLLDIYANGTLIAKGEIVSV 86
Query: 293 GKNYTIRITDRINF 306
Y I++ + +
Sbjct: 87 DGRYGIQVAEVVAP 100
>gi|284989542|ref|YP_003408096.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
43160]
gi|284062787|gb|ADB73725.1| flagellar motor switch protein FliN [Geodermatophilus obscurus DSM
43160]
Length = 249
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 33/72 (45%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + I + T+ ++++L G+V+ A L NG I E+ V
Sbjct: 165 DLLRHVAMEVTVEIGRTRMTVGELLSLHPGEVVELDRAASAPADLLVNGTLIARGEVVVV 224
Query: 293 GKNYTIRITDRI 304
+++ +RI++ +
Sbjct: 225 DEDFGLRISEIV 236
>gi|182679718|ref|YP_001833864.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635601|gb|ACB96375.1| flagellar motor switch protein FliN [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 109
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
L+ + ++DL + ++ V + + + +++ L G VIP HR
Sbjct: 9 LNMDHGETTTAKDLNNRNLDTILRIPVTVQVVLGSASMPVSNLLKLGRGAVIPLDHRVGE 68
Query: 274 CAILSANGKEIYSCELGRV---GKNYTIRITDRINF 306
+ NG+ I E+ V + + +T+ +
Sbjct: 69 PVDIVVNGRVIARGEVVVVEDDNSRFGVSLTEIVGP 104
>gi|119503673|ref|ZP_01625756.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
gi|119460735|gb|EAW41827.1| flagellar motor switch protein [marine gamma proteobacterium
HTCC2080]
Length = 112
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 32/78 (41%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + ++ T+K+++ L G V+ F L NG + E+
Sbjct: 30 DLLMDVPVYLTVEVGRRRMTIKELLALASGSVVTFDRSVTEPMDLMVNGTLVARGEVVSA 89
Query: 293 GKNYTIRITDRINFDQKS 310
+ +R+ D ++ ++
Sbjct: 90 EGQFGLRLVDVVSPKERL 107
>gi|226225726|ref|YP_002759832.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
gi|226088917|dbj|BAH37362.1| flagellar motor switch protein FliN [Gemmatimonas aurantiaca T-27]
Length = 141
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + + + T+++++ L G VI + + E+ +G+
Sbjct: 60 LLDLTLPVSIELGRTSMTVQEILRLGRGSVIQLDRLAGEPIDIYVGDRRFAEGEVVVLGE 119
Query: 295 NYTIRITDRI 304
++ +RIT +
Sbjct: 120 HFGVRITRVL 129
>gi|260767962|ref|ZP_05876896.1| putative flagellar motor switch protein [Vibrio furnissii CIP
102972]
gi|260615992|gb|EEX41177.1| putative flagellar motor switch protein [Vibrio furnissii CIP
102972]
Length = 256
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 33/221 (14%)
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
F+ ++++ITL + GA+ + L++ +++L +R ++
Sbjct: 69 GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 119
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
QE + + + N +++ + LI+ + +
Sbjct: 120 APQEMW------------QLHEGDIGNGIGLKAELSVRYADQHGVLTLIMESQLVQTLID 167
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ +L F R V ++ ++ K L DV+ L ++P
Sbjct: 168 QL------DLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSDVLRLTPNDILPIDLL- 220
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ +S + ++S + + +N D++SL+
Sbjct: 221 -STVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 256
>gi|121602197|ref|YP_989410.1| flagellar motor switch protein fliY [Bartonella bacilliformis
KC583]
gi|120614374|gb|ABM44975.1| flagellar motor switch protein fliY [Bartonella bacilliformis
KC583]
Length = 139
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ ++ + + V + + + +++ L G VI + +
Sbjct: 48 SSKTQENTNDASNNTELVMSIPVEVQIVLGSTTMPVANLMNLGRGSVITLNKQIGDPIDI 107
Query: 278 SANGKEIYSCELGRVGK---NYTIRITDRINF 306
NG+ I E+ + + + +T+ I+
Sbjct: 108 VVNGRIIARGEVIVLEDDSSRFGVSLTEVIDK 139
>gi|269105050|ref|ZP_06157745.1| type III secretion inner membrane protein YscQ [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268160685|gb|EEZ39183.1| type III secretion inner membrane protein YscQ [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 321
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 35/93 (37%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q K N ++ QL + + + + TL+ + L+ G
Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISDPVT 286
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ ANGK I CEL + + +R+ + Q+
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319
>gi|227873537|ref|ZP_03991782.1| possible flagellar motor switch protein FliY [Oribacterium sinus
F0268]
gi|227840627|gb|EEJ51012.1| possible flagellar motor switch protein FliY [Oribacterium sinus
F0268]
Length = 472
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF------------------ARKTYQLNVNIDTRI 246
L I ++++ LI P ++ + I I
Sbjct: 346 MLELIRDIQGGKNKEAKSSEPSLIKPLNSREFENEGGGAGENPDNREMLMKVPLEISVEI 405
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ +KD++ G ++ A L NG+ I ++ V +N+ IRIT+ +
Sbjct: 406 GRTRKLVKDILDFTQGSLVVLDKMAGEQADLYVNGECIAKGDIVVVEENFGIRITEILKK 465
Query: 307 D 307
D
Sbjct: 466 D 466
>gi|95929862|ref|ZP_01312603.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
gi|95134158|gb|EAT15816.1| Flagellar motor switch FliN [Desulfuromonas acetoxidans DSM 684]
Length = 107
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ +T + + +E+ EDL + + +++ + K +++++ + G VI
Sbjct: 1 MEETEATPAPAPDAAESHDEDLKNL--ELLLDIPLDVSVEVGRTKILVRELLQMDEGYVI 58
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ N + I E+ V +R+TD I+ ++
Sbjct: 59 ELGKNANEPLDVYVNSRLIARGEVVLVDDKLGLRLTDVISPAERI 103
>gi|307944139|ref|ZP_07659480.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
gi|307772485|gb|EFO31705.1| flagellar motor switch phosphatase FliY [Roseibium sp. TrichSKD4]
Length = 112
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 29/76 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V I + K + D++ L G V+ + + N + + E+ V
Sbjct: 37 EAVFDVPVRISAVLGSSKMHVSDLLKLASGTVLELDRKVGEAIDIYVNDRLVARGEVVLV 96
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I D+
Sbjct: 97 EDKLGVTMTEIIKTDR 112
>gi|153831629|ref|ZP_01984296.1| putative flagellar motor switch protein [Vibrio harveyi HY01]
gi|148872139|gb|EDL70956.1| putative flagellar motor switch protein [Vibrio harveyi HY01]
Length = 272
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
P+ I L + I + SL L + + + ++ + + + +F
Sbjct: 8 PISDIKLLDVELLGKPIHIIREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRF 67
Query: 71 SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
S + + +I +I L + GA+ E
Sbjct: 68 S--------PTLLDKDQTSTYQHQDGGMVYIHGDAQALIKLADRFYGAATERTSTS---- 115
Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
L+ + +L +R I L + +
Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QTCEYETPRGIGLHA 156
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+++ E+ + L + + + + DL PF R V ++
Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDTDLYQPFCRSLESTPVRLNV 210
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ K L DVV L+ ++P +S + ++S + +
Sbjct: 211 VLSKKTMALSDVVRLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264
Query: 305 NFDQK 309
N D++
Sbjct: 265 NPDKE 269
>gi|269967104|ref|ZP_06181171.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269828241|gb|EEZ82508.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 218
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 37/251 (14%)
Query: 59 DISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHET 118
+ S TS +F+ + ++ + FI + + +I L + GAS E
Sbjct: 2 EASLTSVDLHRFTSVEMDKEQTSTYQHQE----GGMVFIHGNPHTLIKLADRFYGASAER 57
Query: 119 IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
L+ + +L +R I E E
Sbjct: 58 SAAT----LTASDLRLQERISRIIIG-----WLAPGEMWDTGEYE------------TPR 96
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
+ +N+ ++ S L + + DL PF R
Sbjct: 97 GIGINVQLNIAFDDHQGSIHLKLDGHLIQTLIEQL------ELQPDTDLFQPFCRSLETT 150
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V ++ ++ KK L DVV L+ ++P +S + +++ + +
Sbjct: 151 PVRLNVVLSKKKMPLSDVVGLQPNDILPIELL--NTVPVSIGNQSLFTGRIAEQDGQLVL 208
Query: 299 RITDRINFDQK 309
N D++
Sbjct: 209 ----IFNPDKE 215
>gi|114798836|ref|YP_758975.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
ATCC 15444]
gi|114739010|gb|ABI77135.1| putative flagellar motor switch protein FliN [Hyphomonas neptunium
ATCC 15444]
Length = 99
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + + + + R Y + V + I K+ ++++++ L+ VI + L
Sbjct: 5 DGQDRRDPSGRNSYRRSIYSVPVTVTVSIGQKRLSVQEILELQPDSVIALSSKVDDPVDL 64
Query: 278 SANGKEIYSCELGRV-GKNYTIRITDRINFDQK 309
+ K I EL ++I + I +
Sbjct: 65 FIDDKLIAKGELVETDDGQIAVKIVEIIEKAIE 97
>gi|162147463|ref|YP_001601924.1| flagellar motor switch protein fliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545572|ref|YP_002277801.1| flagellar motor switch protein FliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786040|emb|CAP55622.1| putative flagellar motor switch protein fliN [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533249|gb|ACI53186.1| flagellar motor switch protein FliN [Gluconacetobacter
diazotrophicus PAl 5]
Length = 125
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
Y + V I I + ++ L G V+ + + AN + I E+
Sbjct: 45 MEAVYDIPVKITAVIGSATMPVSQLLKLGRGAVVELDRKLGEAVDIYANNRLIARGEVVV 104
Query: 292 VGKN-YTIRITDRINF 306
V N + +T+ I+
Sbjct: 105 VDDNHIGVTMTEIISS 120
>gi|268043519|gb|ACY92085.1| flagellar motor switch protein [Allochromatium vinosum DSM 180]
Length = 120
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 6/92 (6%)
Query: 6 IHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSC 65
P R+ + + ++L + +IS
Sbjct: 34 TDGQARPYDFATQDRIVRG------RMPTLDMINERFARYLRVHLFNLLRRSSEISVIGA 87
Query: 66 QSGKFSHIIHSFKENFVFSQASLSSWSSNFFI 97
+ KFS HS + +
Sbjct: 88 RVTKFSEYRHSLYVPTSLNLVRVYPLHGIGVA 119
>gi|224825753|ref|ZP_03698857.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
gi|224601977|gb|EEG08156.1| flagellar motor switch protein FliN [Lutiella nitroferrum 2002]
Length = 119
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 32/83 (38%)
Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
+ ++ V + + +L D+V + G V+ + NG I E
Sbjct: 35 RDMSHFLRKIPVTLTLEVGSADISLADLVNIGQGSVLELDKLAGEPLDIKVNGSVIGRAE 94
Query: 289 LGRVGKNYTIRITDRINFDQKSL 311
+ G NY +R+ + + D +L
Sbjct: 95 VVVAGDNYGLRVVELNDLDLDTL 117
>gi|319409197|emb|CBI82841.1| Flagellar motor switch protein fliY [Bartonella schoenbuchensis R1]
Length = 165
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + +++ L G VI + + NG+ I E+ +
Sbjct: 89 ELIMSIPVEVQIVLGSTTMPVANLMDLGRGSVITLDKQIGDPIDIIVNGRIIARGEVIVL 148
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ +
Sbjct: 149 EDDPSRFGVSLTEVMGK 165
>gi|167626139|ref|YP_001676433.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
gi|167356161|gb|ABZ78774.1| flagellar motor switch protein FliN [Shewanella halifaxensis
HAW-EB4]
Length = 118
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 28/68 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+QL V++ + + +L ++ + G V+ + NG + E+ V
Sbjct: 41 HQLPVHVTLELASVEMSLGELAQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100
Query: 296 YTIRITDR 303
Y +R+ +
Sbjct: 101 YGVRLLEV 108
>gi|254470176|ref|ZP_05083580.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
gi|211960487|gb|EEA95683.1| flagellar motor switch protein [Pseudovibrio sp. JE062]
Length = 111
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 29/76 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K + D++ L G V+ + + N + I E+ V
Sbjct: 36 EAVFDVPVQLAAVLGHTKMKVSDLLHLDTGIVMELDRKVGEAIDVYVNNRLIARGEVVLV 95
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I D+
Sbjct: 96 EDKLGVTMTEIIKADK 111
>gi|330505665|ref|YP_004382534.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
gi|328919951|gb|AEB60782.1| flagellar motor switch protein FliN [Pseudomonas mendocina NK-01]
Length = 123
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
++ VN+ + + TLK+++ + G VI + NG E+ + NY
Sbjct: 47 KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106
Query: 297 TIRITD 302
+RI +
Sbjct: 107 GLRIVE 112
>gi|212637764|ref|YP_002314289.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
gi|212559248|gb|ACJ31702.1| Surface presentation of antigens (SPOA) protein [Shewanella
piezotolerans WP3]
Length = 115
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+QL V + + + +L ++ + G V+ + NG + E+ V
Sbjct: 38 HQLPVQVTLELASAEMSLGELTQMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 97
Query: 296 YTIRITDR 303
Y +R+ +
Sbjct: 98 YGVRLLEV 105
>gi|32477467|ref|NP_870461.1| flagellar motor switch protein fliN [fragment] [Rhodopirellula
baltica SH 1]
gi|32448018|emb|CAD77538.1| probable flagellar motor switch protein fliN [Fragment]
[Rhodopirellula baltica SH 1]
Length = 144
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ ++++K S + K ++ ++ + KK L+ ++ L G ++ F
Sbjct: 45 RMSENATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDV 104
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDR-INFDQ 308
L A G I + E ++G + +R+ + + +
Sbjct: 105 HCDRPLTLRAGGHPIATGETVKIGDKFGLRVREIGVPKED 144
>gi|157959918|ref|YP_001499952.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
gi|157844918|gb|ABV85417.1| flagellar motor switch protein FliN [Shewanella pealeana ATCC
700345]
Length = 118
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+QL V + + + +L ++ + G V+ + NG + E+ V
Sbjct: 41 HQLPVQVTLELASAEMSLGELTKMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100
Query: 296 YTIRITDR 303
Y +R+ +
Sbjct: 101 YGVRLLEV 108
>gi|32267076|ref|NP_861108.1| flagellar motor switch protein [Helicobacter hepaticus ATCC 51449]
gi|32263128|gb|AAP78174.1| flagellar motor switch protein FliN [Helicobacter hepaticus ATCC
51449]
Length = 117
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 28/73 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + K L +++ + G +I + NG+ I E+ +
Sbjct: 34 LLDMEALFNAELGSTKIPLGEILRFEKGSIIDLGKPAGESVEIFINGRVIGKGEVMVYER 93
Query: 295 NYTIRITDRINFD 307
N IRI + ++ +
Sbjct: 94 NLAIRINEILDSN 106
>gi|224372351|ref|YP_002606723.1| flagellar motor switch protein [Nautilia profundicola AmH]
gi|223588496|gb|ACM92232.1| surface presentation of antigens (spoa) protein [Nautilia
profundicola AmH]
Length = 103
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
V ++ + TL++++ L+ G VI E A + NG+ I E+
Sbjct: 20 NLLDTEVLFESDLGRVDITLREILALQKGSVIDLQKPEGESAEVYINGRIIGKGEVMVYE 79
Query: 294 KNYTIRITDRINFDQ 308
KN IR+ + ++ +Q
Sbjct: 80 KNLAIRLNEVLDANQ 94
>gi|68164512|gb|AAY87241.1| predicted flagellar motor switch protein [uncultured bacterium
BAC17H8]
Length = 110
Score = 66.6 bits (161), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 39/97 (40%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+++ + + R ++V + + + ++D++ L G VI
Sbjct: 11 AATETMDAETAARVSAENMRLLENIDVALTVEVGKAEIKIRDLLRLNEGSVIELDRLAGD 70
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ ANG I E+ VG+ + IR T+ ++ +
Sbjct: 71 PLDILANGTMIAKGEVVMVGERFGIRFTEIVDPAARM 107
>gi|58038896|ref|YP_190860.1| flagellar motor switch protein [Gluconobacter oxydans 621H]
gi|58001310|gb|AAW60204.1| Flagellar motor switch protein FliN [Gluconobacter oxydans 621H]
Length = 105
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
L K Q E S D + Y + V + + + ++ L G V
Sbjct: 1 MLDKDDFSVEKEQFSKEEISGDKTPNDLQAIYDIPVTLSAVLGRATMPINQLLKLGRGAV 60
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFD 307
+ + + N + I E+ V + + +T+ + +
Sbjct: 61 VELDRKIGDPIDILVNNRLIARGEVVMVDETRLGVTMTEIVKSE 104
>gi|254502033|ref|ZP_05114184.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
gi|222438104|gb|EEE44783.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
Length = 111
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 5/108 (4%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
IP + L + + E + + V I + K + D++ L
Sbjct: 9 IPLDELE-----APDRAGEQEEIPHPQSAADLEAVFDVPVRISAVLGHSKMHVSDLLKLA 63
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G V+ + + N + + E+ V + +T+ I D+
Sbjct: 64 SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 111
>gi|327399029|ref|YP_004339898.1| surface presentation of antigens (SPOA) protein [Hippea maritima
DSM 10411]
gi|327181658|gb|AEA33839.1| surface presentation of antigens (SPOA) protein [Hippea maritima
DSM 10411]
Length = 95
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 28/72 (38%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ + + + + +KD++ K G +I ++ K + E+ + +
Sbjct: 17 DIPLKMVFDLATTQVKVKDLLKWKEGDIIETNKMAGEYININIENKPLGMGEVIVLDNKF 76
Query: 297 TIRITDRINFDQ 308
IRIT+ D
Sbjct: 77 AIRITNIFTKDD 88
>gi|91795009|ref|YP_564660.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217]
gi|91717011|gb|ABE56937.1| hypothetical protein Sden_3662 [Shewanella denitrificans OS217]
Length = 293
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 23/280 (8%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDIS---YTSCQSGKFSHIIHSFKENFVFSQASLSS 90
S + F + + + I+ Y S + S I + +
Sbjct: 29 ARSRIVKRLSHFKRPVIDAVNRIFMPITRQGYPSLSTITLSEIDSPVQAETHLGWFACRH 88
Query: 91 WSSNFFI-GCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
+ L G+ + R S E +L KR + VL
Sbjct: 89 QQKTLAWWRVDRCTLEQLASGYYGSQKNPLSSPL-RQPSQSEFRLIKRLFINVFEVL--- 144
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
P E + ++ N + E + T ++A + + + L
Sbjct: 145 --------PFEELDLEELEIELVKNHATIEADAVWALEFTQGSLAPALHIYMASSLL--- 193
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + S DL A Q+ V + + + + + +K G ++P
Sbjct: 194 --GLVQDMPNQKPISTDLPTKLANWLTQMPVKLRLTLGHQDIPVDSIDQMKAGDILPINL 251
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
K+ +L+ K ++S + ++T N +
Sbjct: 252 YPKS--VLAVGTKALFSATVHSHDGQMLAKLTQDTNHYED 289
>gi|83716202|ref|YP_438370.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|167576641|ref|ZP_02369515.1| flagellar motor switch protein FliN [Burkholderia thailandensis
TXDOH]
gi|167614816|ref|ZP_02383451.1| flagellar motor switch protein FliN [Burkholderia thailandensis
Bt4]
gi|257141401|ref|ZP_05589663.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
gi|83650027|gb|ABC34091.1| flagellar motor switch protein FliN [Burkholderia thailandensis
E264]
Length = 115
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 30/77 (38%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + + +L +++ + G V+ ++ NG + E+
Sbjct: 36 RHLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 95
Query: 292 VGKNYTIRITDRINFDQ 308
G+NY ++I D N
Sbjct: 96 SGENYGLKIIDLENLGD 112
>gi|323493117|ref|ZP_08098248.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
gi|323312588|gb|EGA65721.1| flagellar motor switch protein FliN [Vibrio brasiliensis LMG 20546]
Length = 122
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K L D++ G VI + NG + E+ V +
Sbjct: 45 KNIPVTVTLEVASKDIPLGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104
Query: 296 YTIRITDRINF 306
Y +R+ D ++
Sbjct: 105 YGLRLIDVVDS 115
>gi|160939628|ref|ZP_02086976.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
BAA-613]
gi|158437419|gb|EDP15183.1| hypothetical protein CLOBOL_04520 [Clostridium bolteae ATCC
BAA-613]
Length = 320
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/302 (10%), Positives = 94/302 (31%), Gaps = 41/302 (13%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLVI 105
I + V +S + + + V ++ + S++ + +I
Sbjct: 19 NILGSLLGRSVKMSVSKVEETDMGSLAEGLPHFNVAIESRKAVGGMSADQLYIFAKEDMI 78
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEK-------KLAKRTIAQISAVLNQ------CIST 152
L ++G + L +LST+++ + +
Sbjct: 79 RLTNYIMGVPVDAQSPLDEIALSTLKEVASQCVGAAMDELNDFLGRDMRDTITRISAFDN 138
Query: 153 TQESSPNLEDFYDIDYLKKN------TNRLSNEFVTTINMNMT-IENVASSFVLIIPQET 205
T+ + + D + + ++ + + ++ + +
Sbjct: 139 TERIQDIIRSWNAEDSVLLMGLHYVIDGVVESDAYIVAAQALKQVLGISDMADMPCQETG 198
Query: 206 LLKTTLISLSSQNKSENQS-------------------EDLIDPFARKTYQLNVNIDTRI 246
+ + Q ++ ++ I +K + +++ R+
Sbjct: 199 GQTPGMPAAGMQTAEHKEAIAVQEVSFPEFKYTPIVYAKEQIGEEKKKLLDITLDVSVRL 258
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
++KD+++LK GQ++ + + A + NG+ I ++ G + RI + +
Sbjct: 259 GSTVCSVKDILSLKEGQLLVLDKQAGSPADVVVNGELIGRGDVLVTGDRFGARIIEVVGK 318
Query: 307 DQ 308
+
Sbjct: 319 RE 320
>gi|54307254|ref|YP_128274.1| putative flagellar motor switch protein [Photobacterium profundum
SS9]
gi|46911674|emb|CAG18472.1| putative flagellar motor switch protein [Photobacterium profundum
SS9]
Length = 117
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ VN+ + + + D++ + +G VI + NG + E+ V
Sbjct: 37 IRNIPVNLTLEVASTELMVGDLMNIGLGTVIELDKISGEAMDVKVNGTLLGHAEVVIVNN 96
Query: 295 NYTIRITDRINFDQKSLKNF 314
Y +R+ ++ D LK
Sbjct: 97 KYGLRLVSVVD-DNDMLKGL 115
>gi|330505664|ref|YP_004382533.1| surface presentation of antigens (SpoA) protein [Pseudomonas
mendocina NK-01]
gi|328919950|gb|AEB60781.1| surface presentation of antigens (SpoA) protein [Pseudomonas
mendocina NK-01]
Length = 279
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 77/276 (27%), Gaps = 28/276 (10%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS 71
P + + I L Y + + F +++++
Sbjct: 12 PADSLTRLKPQKLGRHYHKIPHYIRELSSKYPRIISDYFLRNYRINLELLRVDVHEQVDK 71
Query: 72 HIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE 131
++ L+ LE G +P +ST E
Sbjct: 72 EAECLYRSPL-----------GKVGFAMDRPLLTEALECYYGG--TCLPNHEETPVSTSE 118
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE 191
+++ R +S + + I Q D E+V N I
Sbjct: 119 QRMRTRLGLDVSQLFARSILAGQTFGKLEPYDNTYDETTW-------EYVAQFNFTSHIT 171
Query: 192 NVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT 251
+S + + + + + T ++ + + QL V +D + +
Sbjct: 172 GSQASIFIYLDTQLVDELTSRLTPPAPAAQAGNSL------NQIRQLPVRLDCVVASLQM 225
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
L V+ L+ G ++P + N ++++
Sbjct: 226 PLSQVLALRPGDILPMRLL--ERCDVQINQQKLFRG 259
>gi|308273527|emb|CBX30129.1| hypothetical protein N47_D29380 [uncultured Desulfobacterium sp.]
Length = 71
Score = 66.2 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 27/67 (40%)
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + D++ L G +I + + K I E+ V + IR+T+
Sbjct: 1 MELGQTRMLINDLLQLGQGSIIELNKQIGDPIDIFICDKLIAKGEVVVVDDKFGIRLTNI 60
Query: 304 INFDQKS 310
I+ ++
Sbjct: 61 ISPTERI 67
>gi|224825754|ref|ZP_03698858.1| surface presentation of antigens (SPOA) protein [Lutiella
nitroferrum 2002]
gi|224601978|gb|EEG08157.1| surface presentation of antigens (SPOA) protein [Lutiella
nitroferrum 2002]
Length = 291
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 73/213 (34%), Gaps = 12/213 (5%)
Query: 91 WSSNFF-IGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + L++ +L+ G R + E++LA+ +++A L
Sbjct: 79 LDGAGIGVNVARPLLLRILDYRYGGRASPALPAAQPPRE-TETERRLARMLGERLTARLV 137
Query: 148 QCISTTQES-SPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETL 206
Q + P L+ ++ L + + + AS L +
Sbjct: 138 QAVRRLSRRPLPTLKAPPAVETLPFPPGDAPA-WHMQLTLGEAGSGGASQIGLALDAAVF 196
Query: 207 LKT-TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + L + + L PFA + + + R+ K+ TL +++ L++G V+
Sbjct: 197 AQVLRQLPLQAALPGPAAGKTLARPFAEQLS---IRLSARLMEKRLTLGEILDLRVGSVL 253
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
P + A + +++ + +
Sbjct: 254 PVSL--QQQADVYIGRTRVFTAAVAESHGKLCL 284
>gi|126176171|ref|YP_001052320.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS155]
gi|125999376|gb|ABN63451.1| surface presentation of antigens (SPOA) protein [Shewanella baltica
OS155]
Length = 118
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 30/88 (34%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S++ + QL V + + + +L ++ + G VI
Sbjct: 20 SESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPL 79
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDR 303
+ NG + E+ V Y +R+ +
Sbjct: 80 DIRVNGALLGRGEVVEVAGRYGVRLLEI 107
>gi|304412523|ref|ZP_07394129.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|307307182|ref|ZP_07586920.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
gi|304349165|gb|EFM13577.1| flagellar motor switch protein FliN [Shewanella baltica OS183]
gi|306910421|gb|EFN40852.1| flagellar motor switch protein FliN [Shewanella baltica BA175]
Length = 118
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 30/88 (34%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S++ + QL V + + + +L ++ + G VI
Sbjct: 20 SESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPL 79
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDR 303
+ NG + E+ V Y +R+ +
Sbjct: 80 DIRVNGALLGRGEVVEVAGRYGVRLLEI 107
>gi|315179666|gb|ADT86580.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 272
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 76/221 (34%), Gaps = 33/221 (14%)
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
F+ ++++ITL + GA+ + L++ +++L +R ++
Sbjct: 85 GGALFVRLDSHMLITLADRFYGANMARSQSV----LTSSDRRLQERIGKVVAH-----WV 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
QE + + + N +++ + LI+ + +
Sbjct: 136 APQEMW------------QLHEGDIGNGIGLKAELSVRYADQHGVLTLIMESQLVQTLID 183
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ +L F R V ++ ++ K L +V+ L ++P
Sbjct: 184 QL------DLQPNTELNAQFRRSLQHTPVRLNVLLSKKTMPLSEVLRLTPNDILPIDLL- 236
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ +S + ++S + + +N D++SL+
Sbjct: 237 -STVPVSIGHERLFSGRIAEQEGQLVL----ILNQDKESLR 272
>gi|170737013|ref|YP_001778273.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
gi|169819201|gb|ACA93783.1| flagellar motor switch protein FliN [Burkholderia cenocepacia
MC0-3]
Length = 113
Score = 66.2 bits (160), Expect = 7e-09, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 29/71 (40%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
R ++ V + + L D+++ + G + ++ NG + E+
Sbjct: 34 MRMLRRIPVRLTLEVGEATVPLADLLSYETGSTVELNRLAGEPLVIKVNGTPVGLGEVVV 93
Query: 292 VGKNYTIRITD 302
G++Y +RI +
Sbjct: 94 SGEHYGLRIIE 104
>gi|156976198|ref|YP_001447104.1| flagellar motor switch protein [Vibrio harveyi ATCC BAA-1116]
gi|156527792|gb|ABU72877.1| hypothetical protein VIBHAR_04969 [Vibrio harveyi ATCC BAA-1116]
Length = 272
Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 50/305 (16%)
Query: 12 PLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKF 70
P+ I L + I + SL L + + + ++ + + + +F
Sbjct: 8 PISDIKLLDVELLGKPIHIIREKLESLISESCSGLTNELQNWLSTNKIEANLVAVELHRF 67
Query: 71 SHIIHSFKENFVF----SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS 126
S + + +I +I L + GA+ E
Sbjct: 68 S--------PTLLDKDQTSTYQHQDGGMVYIYGDAQALIKLADRFYGAATERTSTS---- 115
Query: 127 LSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTI 184
L+ + +L +R I L + +
Sbjct: 116 LTASDLRLQERISRIIINWLAPQEMW-------------------QTCEYETPRGIGLHA 156
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+++ E+ + L + + + + DL PF R V ++
Sbjct: 157 ELSIAFEDFQGAIHLKLDSTMIQTLIEQL------ALHNDTDLYQPFCRSLESTPVRLNV 210
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ K L DVV L+ ++P +S + ++S + +
Sbjct: 211 VLSKKTMALSDVVGLQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IF 264
Query: 305 NFDQK 309
N D++
Sbjct: 265 NPDKE 269
>gi|86157133|ref|YP_463918.1| surface presentation of antigens (SPOA) protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773644|gb|ABC80481.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 324
Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/311 (10%), Positives = 73/311 (23%), Gaps = 47/311 (15%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ-AS 87
+ LG + + + +V ++ +
Sbjct: 15 AELAAAPRRLGAAVAVAAARALSDLVGAEVSVTGRPVPG-------RALPRPAAARIAID 67
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-------------------S 128
L + + LV+ L++ + G P + +
Sbjct: 68 LPALPGTAILEVEPALVVRLVDRMAGGDGGPAPAAALTPVEATALELLALAALDGACGVA 127
Query: 129 TVEKKLAKRTIAQISA-------VLNQCISTTQESSPNLEDFYDIDYLK---------KN 172
VE++LA R + L + + L + L+
Sbjct: 128 EVEERLAPRLARATAEPAGALALELEIAAGQARGHARLLVPPAAVRALRGPADLDRRVPV 187
Query: 173 TNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI---SLSSQNKSENQSEDLID 229
L + +++ P + +
Sbjct: 188 PGSLRRGTAALTAAELDALE-PGDVLVVDPPADGRDALALPGGLRALGRIDGEGFHVEET 246
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ QL V ++ + L +V L+ G V+ + L + + EL
Sbjct: 247 EMIERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLVTLRLGERAVARGEL 306
Query: 290 GRVGKNYTIRI 300
V +RI
Sbjct: 307 VDVEGAVGVRI 317
>gi|197104747|ref|YP_002130124.1| fliN family protein [Phenylobacterium zucineum HLK1]
gi|196478167|gb|ACG77695.1| fliN family protein [Phenylobacterium zucineum HLK1]
Length = 108
Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 26/76 (34%)
Query: 227 LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYS 286
DP + +NV I + ++ ++ + G VIP + AN +
Sbjct: 21 WSDPSVSQVKAVNVEIQVVLGRASLPMQQLLRMGRGAVIPLDATVNEEVWILANNHPVAR 80
Query: 287 CELGRVGKNYTIRITD 302
E+ I +T
Sbjct: 81 GEIQISDDKIAIAVTR 96
>gi|91200231|emb|CAJ73275.1| strong similar to flagellar motor switch protein FliN [Candidatus
Kuenenia stuttgartiensis]
Length = 120
Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 28/78 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + +KD++ L G ++ T L GK + E+ V
Sbjct: 39 DLILDVTVPVSVELGRANMLIKDILALSQGSIVELEKVAGTPVELLVRGKLLARGEVVVV 98
Query: 293 GKNYTIRITDRINFDQKS 310
+ + ++IT +
Sbjct: 99 EERFGLKITAICGPQDRV 116
>gi|114797535|ref|YP_758983.1| SPOA family protein [Hyphomonas neptunium ATCC 15444]
gi|114737709|gb|ABI75834.1| SPOA family protein [Hyphomonas neptunium ATCC 15444]
Length = 246
Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 12/214 (5%)
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK---LAKRTIAQ-ISAVLNQCISTTQ 154
S L + + + + ++ + ++ K ++ +
Sbjct: 26 VSPGLCAIATDGA--GAARIVAKRLSQDFESAKEASALFLKLMFEAPAVSLWRATAEALE 83
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
+ D ++ N ++ I ++ E + L+ + L
Sbjct: 84 GHQADTLASPLSDPMQAAGNFETDSRYLVIAYSVMPEALQCQIWLVFDLDYL--MGCAHE 141
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ + +EN+ ++ ++ ++ T+ + LK+G +IP +
Sbjct: 142 AERRAAENKRPSTSRQLRDSVMSSSIRVEAVLDKISMTIGECSRLKVGDLIPLPDTDPGS 201
Query: 275 AIL---SANGK-EIYSCELGRVGKNYTIRITDRI 304
L + NG+ EI CE+G + +++ +
Sbjct: 202 VRLNAETVNGQIEIGQCEMGVWKRQRALKLKQPV 235
>gi|163802008|ref|ZP_02195904.1| type III secretion protein [Vibrio sp. AND4]
gi|159174149|gb|EDP58957.1| type III secretion protein [Vibrio sp. AND4]
Length = 321
Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q K N ++ QL + + + + TL+ + L+ G
Sbjct: 227 QEKESNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPVSNPVT 286
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
+ ANGK I CEL + + +R+ + Q+ +
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQEPV 321
>gi|114569234|ref|YP_755914.1| flagellar motor switch protein [Maricaulis maris MCS10]
gi|114339696|gb|ABI64976.1| flagellar motor switch protein FliN [Maricaulis maris MCS10]
Length = 118
Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 26/74 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + + ++ L G V+ + + N + + E+ V
Sbjct: 43 VFDVPVNISAVLGKAHIDVNSLLKLTSGSVVELDRKIGEAIDIYVNNRLVARGEVVVVDD 102
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 103 RLGVTMTEIIKDGD 116
>gi|258514013|ref|YP_003190235.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257777718|gb|ACV61612.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 128
Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + T+++V+ L G +I +S N ++ E+ +
Sbjct: 42 KHIEDVPVIVTAELGGAALTVREVLNLSPGMLIKLDVLAGELVTMSINNQKFGRGEVMVI 101
Query: 293 GKNYTIRITDRINF 306
NY IRIT
Sbjct: 102 NDNYGIRITSVFKP 115
>gi|167590549|ref|ZP_02382937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ubonensis Bu]
Length = 211
Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 54/212 (25%), Gaps = 14/212 (6%)
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
W + + + + A + + L
Sbjct: 3 WRCHGAVLFDAPDALAV----FFAERPAARPDARAVYAGLPVPLVFEIGRTELTTAELA- 57
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+E + + RL I + + + +P L T
Sbjct: 58 DVVAGDIIAIEHWRAHEQNLLCVARLPAAPAWEITGRPSGNRLTVERIREMP---LEPTR 114
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + E R L V++ + L ++ L+ G VI
Sbjct: 115 TDTPPTLSPDAPPHEA-----PRTLDALAVDLRFELPSTSMPLGELAVLQPGAVIELQQG 169
Query: 271 EKTCA-ILSANGKEIYSCELGRVGKNYTIRIT 301
L ANG I + L VG+ +R+
Sbjct: 170 INQSVIHLVANGMLIGTGHLIAVGQKLGVRVV 201
>gi|308050041|ref|YP_003913607.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
gi|307632231|gb|ADN76533.1| flagellar motor switch protein FliN [Ferrimonas balearica DSM 9799]
Length = 118
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 26/68 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V + + + +L +++ L G ++ L NG + E+ V
Sbjct: 41 SHLPVQVSLELASAELSLGELMALGEGDIVALDRMVGEPLDLRVNGTLLGRGEVVEVNGR 100
Query: 296 YTIRITDR 303
Y +R+ +
Sbjct: 101 YGVRLLEV 108
>gi|308182740|ref|YP_003926867.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
gi|308064925|gb|ADO06817.1| flagellar motor switch protein [Helicobacter pylori PeCan4]
Length = 123
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT------YQLNVNIDTRINLKKTTLK 254
+P+ K + + S+ + +L + + + + L
Sbjct: 1 MPETESNKLKIAEKEKERASKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
++ + G VI NG+ I E+ +N IR+ + ++ +
Sbjct: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113
>gi|254299707|ref|ZP_04967156.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
gi|157809331|gb|EDO86501.1| flagellar motor switch protein [Burkholderia pseudomallei 406e]
Length = 111
Score = 65.8 bits (159), Expect = 9e-09, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 31/77 (40%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++ V + + +L +++ + G V+ ++ NG + E+
Sbjct: 32 RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 91
Query: 292 VGKNYTIRITDRINFDQ 308
G+NY +++ D N
Sbjct: 92 SGENYGLKVIDLENLGD 108
>gi|163800129|ref|ZP_02194030.1| flagellar motor switch protein [Vibrio sp. AND4]
gi|159175572|gb|EDP60366.1| flagellar motor switch protein [Vibrio sp. AND4]
Length = 122
Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ +
Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104
Query: 296 YTIRITDRINF 306
Y +R+ + +
Sbjct: 105 YGLRLIEVHDS 115
>gi|328542766|ref|YP_004302875.1| flagellar motor switch phosphatase FliY [polymorphum gilvum
SL003B-26A1]
gi|326412512|gb|ADZ69575.1| Flagellar motor switch phosphatase FliY [Polymorphum gilvum
SL003B-26A1]
Length = 112
Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 32/102 (31%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
L + E + + V I + + + D++ L G V+
Sbjct: 11 LDELESPGRRSDDGEEGVHVQSAADLEAVFDVPVRISAVLGHSRMHVSDLLKLAAGTVLE 70
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + N + + E+ V + +T+ I D+
Sbjct: 71 LDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 112
>gi|90577376|ref|ZP_01233187.1| flagellar motor switch protein [Vibrio angustum S14]
gi|90440462|gb|EAS65642.1| flagellar motor switch protein [Vibrio angustum S14]
Length = 121
Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 217 QNKSENQSEDLIDPFARK----TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
Q + ++ L +++ ++ V + ++ + +L +++ G VI
Sbjct: 21 QLEQFEETPQLDSSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKLNG 80
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ NG + E+ + + Y +R+ D + ++
Sbjct: 81 EPLDVKVNGSLMGHAEVVVINEKYGLRLIDVVESPLNTMDG 121
>gi|118593639|ref|ZP_01551015.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
gi|118433750|gb|EAV40411.1| flagellar motor switch protein [Stappia aggregata IAM 12614]
Length = 111
Score = 65.4 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
IP + L S+ + DL + + V I + + + D++ L
Sbjct: 9 IPLDELEAPERRLDDSETHVPQSAADL-----EAVFDVPVRISAVLGHSRMHVSDLLKLA 63
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
G V+ + + N + + E+ V + +T+ I D+
Sbjct: 64 SGTVLELDRKVGEAIDIYVNDRLVARGEVVLVEDKLGVTMTEIIKTDR 111
>gi|89072283|ref|ZP_01158862.1| flagellar motor switch protein [Photobacterium sp. SKA34]
gi|89051815|gb|EAR57267.1| flagellar motor switch protein [Photobacterium sp. SKA34]
Length = 121
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 38/103 (36%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ L +++ + ++ V + ++ + +L +++ G VI
Sbjct: 19 DLQLEQFDETPQLDNSMSQRSLSFFKKIPVTVTLEVSSTEISLGELMKAGEGSVIELDKL 78
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKN 313
+ NG + E+ + + Y +R+ D + ++ +
Sbjct: 79 NGEPLDVKVNGSLMGHAEVVVINEKYGLRLIDVVESPLNTMDS 121
>gi|209966468|ref|YP_002299383.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|209959934|gb|ACJ00571.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 105
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 24/75 (32%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ V + R+ ++ + ++ L V+ L N + + EL
Sbjct: 17 RNSILSVPVQVSVRLGRRRMRISQLLRLGPSDVVDLERMVGEPVDLFVNDRLVARGELVV 76
Query: 292 VGKNYTIRITDRINF 306
V + I + +
Sbjct: 77 VDGRLGLTIVELMPQ 91
>gi|146309435|ref|YP_001189900.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
gi|145577636|gb|ABP87168.1| flagellar motor switch protein FliN [Pseudomonas mendocina ymp]
Length = 123
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
++ VN+ + + TLK+++ + G VI + NG E+ + NY
Sbjct: 47 KIPVNVTLEVASTEITLKELMDVDAGSVIALDKLAGEPLDVKVNGALFAKAEVVVMNGNY 106
Query: 297 TIRITD 302
+RI +
Sbjct: 107 GLRIVE 112
>gi|312884810|ref|ZP_07744502.1| flagellar motor switch/type III secretory pathway protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367462|gb|EFP95022.1| flagellar motor switch/type III secretory pathway protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 120
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ V
Sbjct: 43 KNIPVTVTLEVASKEVALGDLMKAGEGSVIELDKMNGEPLDVKVNGSLMGHAEVVVVNDK 102
Query: 296 YTIRITDRINF 306
Y +R+ D ++
Sbjct: 103 YGLRLIDVVDE 113
>gi|16126414|ref|NP_420978.1| hypothetical protein CC_2175 [Caulobacter crescentus CB15]
gi|221235194|ref|YP_002517630.1| hypothetical protein CCNA_02257 [Caulobacter crescentus NA1000]
gi|13423672|gb|AAK24146.1| FliN family protein [Caulobacter crescentus CB15]
gi|220964366|gb|ACL95722.1| fliN family protein [Caulobacter crescentus NA1000]
Length = 103
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 26/69 (37%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ +NV I + ++ ++ + G VIP + + AN I E+
Sbjct: 23 QVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTHDEVWILANNHPIARGEIQISD 82
Query: 294 KNYTIRITD 302
I++T
Sbjct: 83 DRIAIQVTR 91
>gi|120597290|ref|YP_961864.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
gi|120557383|gb|ABM23310.1| flagellar motor switch protein FliN [Shewanella sp. W3-18-1]
Length = 128
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTL 259
P + L KS ++ + QL V + + + +L ++ +
Sbjct: 14 PILSDDDFLLDDDIFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRM 73
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
G VI + NG + E+ V Y +R+ +
Sbjct: 74 GEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 117
>gi|308050040|ref|YP_003913606.1| surface presentation of antigens (SPOA) protein [Ferrimonas
balearica DSM 9799]
gi|307632230|gb|ADN76532.1| surface presentation of antigens (SPOA) protein [Ferrimonas
balearica DSM 9799]
Length = 287
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 28/226 (12%)
Query: 87 SLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + L + G + S E +L KR + L
Sbjct: 87 ERQPLTWWG---IDRCSLDQLASSYYGG-GQRPLSCPLTPPSQSELRLVKRLMVAALDAL 142
Query: 147 -NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIP--Q 203
+ LE + + + +P Q
Sbjct: 143 AQERWDIDALDLEVLEPGQTLPAP------------LRWQFD-------WARESALPKMQ 183
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
L L SL+ + DL R+ +QL + + ++ + + + L+ G+
Sbjct: 184 WMLSDAALASLTRTPMQAPVAPDLAQRLKRRLHQLPIRLSCQLGGQSMPTEALAGLQPGE 243
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
++P ++ ++ G+ I+ + ++T ++ +
Sbjct: 244 ILPLTLVRRSP--VAVGGRPIFHATVHAHEGQLVAKLTHELHQHED 287
>gi|144897407|emb|CAM74271.1| flagellar motor switch protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 107
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 27/76 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
Y + V + + + ++ L G V+ + + N + + E+ V
Sbjct: 31 EAVYDIPVQVSAVLGKANMQVNQLLKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 90
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I D+
Sbjct: 91 EDRLGVTMTEIIKTDR 106
>gi|167567195|ref|ZP_02360111.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia oklahomensis EO147]
gi|167574619|ref|ZP_02367493.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia oklahomensis C6786]
Length = 115
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 30/71 (42%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++ V + + TL +++ ++ G V+ ++ NG + E+
Sbjct: 36 MQLLAKIPVQLTLEVGSATITLAELMAIEEGSVLELDRLAGEPLLIKINGTPVGHAEVVV 95
Query: 292 VGKNYTIRITD 302
G NY +++ D
Sbjct: 96 SGDNYGLKLLD 106
>gi|313682523|ref|YP_004060261.1| surface presentation of antigens (spoa) protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155383|gb|ADR34061.1| surface presentation of antigens (SPOA) protein [Sulfuricurvum
kujiense DSM 16994]
Length = 114
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ +D + V + + TL +++ L+ G VI
Sbjct: 10 SLHHEHGFDPEKELSWMDY--DGLLDMEVEFVSDLGQTTLTLDEILKLEKGSVIDLGKPA 67
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
N + I E+ KN IRI + ++
Sbjct: 68 GESVESYVNRRIIGKGEVMVYEKNLAIRINEVLDS 102
>gi|304392514|ref|ZP_07374454.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
gi|303295144|gb|EFL89504.1| flagellar motor switch protein FliN [Ahrensia sp. R2A130]
Length = 171
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P+ K + + + +++D + + + D++ L I
Sbjct: 27 PRYDFDKVADALADVSPAASRSPVSPKRDATNSLWSIPLDVDVVLGHARLPVSDLMNLSI 86
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCEL---GRVGKNYTIRITD 302
G + R + ANG I +L G+ + +R+T
Sbjct: 87 GDTLSLDRRIGDPVEIVANGTTIAWGQLCAVDESGERFGVRLTK 130
>gi|163850081|ref|YP_001638124.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218528684|ref|YP_002419500.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240137214|ref|YP_002961683.1| flagellar motor switch protein fliN [Methylobacterium extorquens
AM1]
gi|254559226|ref|YP_003066321.1| flagellar motor switch protein fliN [Methylobacterium extorquens
DM4]
gi|163661686|gb|ABY29053.1| flagellar motor switch protein FliN [Methylobacterium extorquens
PA1]
gi|218520987|gb|ACK81572.1| flagellar motor switch protein FliN [Methylobacterium
chloromethanicum CM4]
gi|240007180|gb|ACS38406.1| flagellar motor switch protein fliN [Methylobacterium extorquens
AM1]
gi|254266504|emb|CAX22268.1| flagellar motor switch protein fliN [Methylobacterium extorquens
DM4]
Length = 108
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V + + + D++ L G V+P HR + NG+ I E+ V
Sbjct: 25 DSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIV 84
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 85 EEDNSRFGVSLTEVVGP 101
>gi|255028593|ref|ZP_05300544.1| flagellar motor switch protein FliM [Listeria monocytogenes LO28]
Length = 99
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 39/98 (39%)
Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
S+ + +P ++ + + + ++ + ++ +Q+ R+ KTT K
Sbjct: 1 STMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWK 60
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ L++G V+ + K + C +G+
Sbjct: 61 ELNKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKK 98
>gi|126444393|ref|YP_001061223.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei 668]
gi|134280738|ref|ZP_01767448.1| flagellin [Burkholderia pseudomallei 305]
gi|167725907|ref|ZP_02409143.1| flagellar motor switch protein FliN [Burkholderia pseudomallei
DM98]
gi|254182912|ref|ZP_04889505.1| lateral flagellar export/assembly protein [Burkholderia
pseudomallei 1655]
gi|125657198|gb|ABN48686.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei]
gi|126223884|gb|ABN87389.1| flagellar motor switch/type III secretory pathway protein
[Burkholderia pseudomallei 668]
gi|134247760|gb|EBA47844.1| flagellin [Burkholderia pseudomallei 305]
gi|184213446|gb|EDU10489.1| lateral flagellar export/assembly protein [Burkholderia
pseudomallei 1655]
Length = 115
Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 31/77 (40%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++ V + + +L +++ + G V+ ++ NG + E+
Sbjct: 36 RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTTVGHAEVVV 95
Query: 292 VGKNYTIRITDRINFDQ 308
G+NY ++I D N
Sbjct: 96 SGENYGLKIIDLENLGD 112
>gi|153832536|ref|ZP_01985203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
harveyi HY01]
gi|148871331|gb|EDL70203.1| type III secretion apparatus protein, YscQ/HrcQ family [Vibrio
harveyi HY01]
Length = 321
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 35/93 (37%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q K N ++ QL + + + + TL+ + L+ G
Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 286
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ ANGK I CEL + + +R+ + Q+
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319
>gi|255022052|ref|ZP_05294058.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
gi|254968538|gb|EET26094.1| Flagellar motor switch protein FliN [Acidithiobacillus caldus ATCC
51756]
Length = 120
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + + K+++ L G VI + NG+ E V
Sbjct: 36 DLLVNVPMRISVELGRTRMPFKNILQLSQGSVIELNRAVGEPLTIYINGEIFAYGEAVLV 95
Query: 293 G-KNYTIRITDRINFDQ 308
+ + +R+T +N +
Sbjct: 96 NQERFGVRLTALVNKED 112
>gi|269963171|ref|ZP_06177506.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832135|gb|EEZ86259.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 321
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
++ + + QL + + + + TL+ + L+ G +
Sbjct: 230 ETNMNDINSSEALTDH-QQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVTMR 288
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
ANGK I CEL + + +R+ + Q+
Sbjct: 289 ANGKIIGECELVNINERLGVRVLELFGGSQE 319
>gi|291276711|ref|YP_003516483.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
12198]
gi|290963905|emb|CBG39742.1| putative flagellar motor switch protein FliN [Helicobacter mustelae
12198]
Length = 112
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + K T+K+++ + G VI + N + + E+
Sbjct: 28 EGLLDIEAVFTAELGSTKLTIKEILNFERGSVIDLGKPAGESVDVFINTRIVGRGEVMVY 87
Query: 293 GKNYTIRITDRINFD 307
KN IR+ + ++ +
Sbjct: 88 EKNLAIRLNEILDSN 102
>gi|153831591|ref|ZP_01984258.1| flagellar motor switch protein [Vibrio harveyi HY01]
gi|148872101|gb|EDL70918.1| flagellar motor switch protein [Vibrio harveyi HY01]
Length = 122
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ +
Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104
Query: 296 YTIRITDRINF 306
Y +R+ D +
Sbjct: 105 YGLRLIDVHDS 115
>gi|41834183|gb|AAS13321.1| VscQ [Vibrio harveyi]
Length = 321
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 35/93 (37%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q K N ++ QL + + + + TL+ + L+ G
Sbjct: 227 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 286
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ ANGK I CEL + + +R+ + Q+
Sbjct: 287 MRANGKIIGECELVNINERLGVRVLELFGGSQE 319
>gi|254294568|ref|YP_003060591.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
gi|254043099|gb|ACT59894.1| flagellar motor switch protein FliN [Hirschia baltica ATCC 49814]
Length = 115
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 26/69 (37%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ V++ I + +++ L G V+ R + N + + E+ V
Sbjct: 43 DVPVSVQAVIGRTTMEVSELMHLGEGSVLELDRRVGEAIDIYVNSRLVARGEIVVVDDRL 102
Query: 297 TIRITDRIN 305
+ +T+ I
Sbjct: 103 GVTMTEIIK 111
>gi|146294565|ref|YP_001184989.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
gi|145566255|gb|ABP77190.1| flagellar motor switch protein FliN [Shewanella putrefaciens CN-32]
Length = 124
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 2/104 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARK--TYQLNVNIDTRINLKKTTLKDVVTL 259
P + L KS ++ + QL V + + + +L ++ +
Sbjct: 10 PILSDDDFLLDDDIFSEKSLSKQDTQSRKLKNNNFFQQLPVQVTLELASAEMSLGELNRM 69
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
G VI + NG + E+ V Y +R+ +
Sbjct: 70 GEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEI 113
>gi|326386954|ref|ZP_08208567.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
19370]
gi|326208563|gb|EGD59367.1| flagellar motor switch protein [Novosphingobium nitrogenifigens DSM
19370]
Length = 93
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++V + + + LKDV+ L V+ + NGK I E+
Sbjct: 9 DLIMDVDVRLTVELGKTEMKLKDVLALTEESVVVLDRMTDELLDVMVNGKLIARGEVVAQ 68
Query: 293 GKNYTIRITDRINFD 307
G + +RI + + D
Sbjct: 69 GDRFGLRIVELVGQD 83
>gi|156974016|ref|YP_001444923.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
gi|156525610|gb|ABU70696.1| hypothetical protein VIBHAR_01727 [Vibrio harveyi ATCC BAA-1116]
Length = 322
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 35/93 (37%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q K N ++ QL + + + + TL+ + L+ G
Sbjct: 228 QEKETNMNDINSSEALTDHQQLPIELTFDVGQQTITLEQLNALQPGFTFELNQPISNPVT 287
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+ ANGK I CEL + + +R+ + Q+
Sbjct: 288 MRANGKIIGECELVNINERLGVRVLELFGGSQE 320
>gi|260427005|ref|ZP_05780984.1| surface presentation of antigens protein [Citreicella sp. SE45]
gi|260421497|gb|EEX14748.1| surface presentation of antigens protein [Citreicella sp. SE45]
Length = 355
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/269 (11%), Positives = 80/269 (29%), Gaps = 21/269 (7%)
Query: 43 KKFLPKIFKEKMDLDVDISYT----SCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
K L + D+ D++ S + ++ + + +
Sbjct: 4 AKALRRALSRTADVLWDLALVTHGVSQEMADQDGVVEMLPSGTLLLLLDGPGGALGLAM- 62
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
++ L+E +P + R ++ + + + L + + P
Sbjct: 63 IDREIMTGLIEVQTLLQVTQMP-VEERPITQTDAAMMAPLVDGTLDRLERYLEG-HPLRP 120
Query: 159 NLEDFYDIDYLKKNTNR-----LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
F ++ + +++++ + + +L++P
Sbjct: 121 QFAGFRFGAMVEDARTAGLLLDAAGYRAFNVSVDLALGRRKGTILLVLP--------DRP 172
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ + +E+ P RK L V +D + L L+ G +IP
Sbjct: 173 DAGKADAEDGDAATPGPHERKMKLLPVRMDAVLCSLTIPLSAAQRLRAGDLIPLPPEALD 232
Query: 274 CAIL-SANGKEIYSCELGRVGKNYTIRIT 301
+ G + LG++ +R++
Sbjct: 233 SVEFVAGAGPAVAGGRLGQMNGMRAVRLS 261
>gi|170748132|ref|YP_001754392.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
gi|170654654|gb|ACB23709.1| flagellar motor switch protein FliN [Methylobacterium radiotolerans
JCM 2831]
Length = 130
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V + + + +++ L G ++P HR + NG+ I E+ V
Sbjct: 47 DSILRIPVLMQVVLGSATMPVSNLMKLGRGAIVPLDHRVGEPVDVVVNGRVIARGEVVVV 106
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 107 EDDNSRFGVSLTEIVGP 123
>gi|167905066|ref|ZP_02492271.1| flagellar motor switch protein FliN [Burkholderia pseudomallei NCTC
13177]
Length = 115
Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 31/77 (40%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++ V + + +L +++ + G V+ ++ NG + E+
Sbjct: 36 RQLLAKIPVQLTLEVGTATVSLAELMNIDEGTVLELDRLAGEPLLVKVNGTAVGHAEVVV 95
Query: 292 VGKNYTIRITDRINFDQ 308
G+NY ++I D N
Sbjct: 96 SGENYGLKIIDLENLGD 112
>gi|188579886|ref|YP_001923331.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
gi|179343384|gb|ACB78796.1| flagellar motor switch protein FliN [Methylobacterium populi BJ001]
Length = 108
Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V + + + D++ L G V+P HR + NG+ I E+ V
Sbjct: 25 DSILRIPVLMQVVLGSATMPVADLMKLGRGAVVPLDHRVGEPVDVMVNGRVIARGEIVIV 84
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 85 EEDNSRFGVSLTEVVGP 101
>gi|83859386|ref|ZP_00952907.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
gi|83852833|gb|EAP90686.1| flagellar motor switch protein [Oceanicaulis alexandrii HTCC2633]
Length = 125
Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 26/74 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + VNI + + ++ L G V+ + + N + + E+ V
Sbjct: 50 VFDVPVNISAVLGKAHVDVNSLLRLTSGSVLELDRKVGEAIDIYVNSRLVARGEVVVVDD 109
Query: 295 NYTIRITDRINFDQ 308
+ +T+ I
Sbjct: 110 RLGVTMTEIIKDGD 123
>gi|260779322|ref|ZP_05888214.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605486|gb|EEX31781.1| flagellar motor switch protein FliN [Vibrio coralliilyticus ATCC
BAA-450]
Length = 122
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K L D++ G VI + NG + E+ V +
Sbjct: 45 KNIPVTVTLEVASKDIALGDLMKAGEGSVIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104
Query: 296 YTIRITDRINF 306
Y +R+ D ++
Sbjct: 105 YGLRLIDIVDS 115
>gi|320107040|ref|YP_004182630.1| surface presentation of antigens (SPOA) protein [Terriglobus
saanensis SP1PR4]
gi|319925561|gb|ADV82636.1| surface presentation of antigens (SPOA) protein [Terriglobus
saanensis SP1PR4]
Length = 100
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + ++ + ++ LK+++ L G VI
Sbjct: 1 MEQVNENDPTVTPAL-DLLMDIELDATLQFGAREMQLKEILALSPGDVIELDRNVSDPVD 59
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDR 303
L + + E+ + + + +T+
Sbjct: 60 LVIGDRIVARGEVVVLNGYFALNVTEV 86
>gi|296283237|ref|ZP_06861235.1| flagellar motor switch protein [Citromicrobium bathyomarinum JL354]
Length = 126
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 34/76 (44%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+++ V + + + T+ +++++ G+V+ + + + + I E+ +
Sbjct: 51 DAVHEVPVKMQAVLGRARMTVSELMSIAPGRVVELDRKVGEPVDIFVSNRLIARGEVVLI 110
Query: 293 GKNYTIRITDRINFDQ 308
K + +T+ ++ D
Sbjct: 111 DKALGVTLTEIVHEDD 126
>gi|237751015|ref|ZP_04581495.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
gi|229373460|gb|EEO23851.1| flagellar motor switch protein FliN [Helicobacter bilis ATCC 43879]
Length = 128
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + L +++ + G +I + N + + E+
Sbjct: 39 EGLLDMKVLFSADLGTTQIPLNEILKYEKGSIIDLQKPAGASVEIFVNDRVVGKGEVMVY 98
Query: 293 GKNYTIRITDRINFD 307
+N IRI + ++ +
Sbjct: 99 ERNLAIRINEILDSN 113
>gi|34498457|ref|NP_902672.1| flagellar motor switch protein [Chromobacterium violaceum ATCC
12472]
gi|34104312|gb|AAQ60671.1| probable flagellar motor switch protein [Chromobacterium violaceum
ATCC 12472]
Length = 116
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++ V + + +L D+ + G V+ + NG I E+ G
Sbjct: 39 LRKIPVKLTLEVGSADISLADLCQISAGSVVELDKIAGEPLDIKVNGTVIGRAEVVVSGD 98
Query: 295 NYTIRITD 302
NY +R+ +
Sbjct: 99 NYGLRVVE 106
>gi|322379168|ref|ZP_08053561.1| flagellar motor switch protein [Helicobacter suis HS1]
gi|322379653|ref|ZP_08053972.1| flagellar motor switch protein [Helicobacter suis HS5]
gi|321147915|gb|EFX42496.1| flagellar motor switch protein [Helicobacter suis HS5]
gi|321148399|gb|EFX42906.1| flagellar motor switch protein [Helicobacter suis HS1]
Length = 117
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 28/75 (37%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + L++V+ + G VI NG+ I E+
Sbjct: 33 KGLLDMEITFMAELGSTFIPLREVLRFERGSVIDLQKPAGESVDTFVNGRVIGKGEVMVY 92
Query: 293 GKNYTIRITDRINFD 307
KN IR+ + ++ +
Sbjct: 93 EKNLAIRLNEVLDSN 107
>gi|91795010|ref|YP_564661.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
gi|91717012|gb|ABE56938.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
Length = 122
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 26/68 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
QL V + + + L D+ + G VI + NG + E+ VG
Sbjct: 45 QQLPVKVSLELASVELPLGDLTRMGEGDVIALDRMVGEALDIRVNGALLGKGEVVEVGGR 104
Query: 296 YTIRITDR 303
Y +R+ +
Sbjct: 105 YGVRLLEV 112
>gi|315121855|ref|YP_004062344.1| putative flagellar motor switch protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495257|gb|ADR51856.1| putative flagellar motor switch protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 136
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
PQ L ++ S+ N +S D I + VNI + + ++V L
Sbjct: 32 PQNDLDDSSEKISSNSNNIFEKSSDNI----DLIMNIPVNIQIILGSCCMQISNLVNLSK 87
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINFD 307
G VI R ++ N ++I E+ + ++ +R+ + +N
Sbjct: 88 GDVITLDKRVGEAVDITINNQKIAKGEITIMEDDDTHFGVRVIELLNSK 136
>gi|134300237|ref|YP_001113733.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
reducens MI-1]
gi|134052937|gb|ABO50908.1| surface presentation of antigens (SPOA) protein [Desulfotomaculum
reducens MI-1]
Length = 128
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 26/74 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V I + K ++V+ L +G V+ + N + E+ V
Sbjct: 49 IEDVKVTISAELGEKILKFREVLNLDVGTVLDMEKSAGDAINVYINDIKAAQGEIIIVND 108
Query: 295 NYTIRITDRINFDQ 308
+ +RI + +
Sbjct: 109 KFAVRINSITSPKK 122
>gi|169831901|ref|YP_001717883.1| surface presentation of antigens (SPOA) protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169638745|gb|ACA60251.1| surface presentation of antigens (SPOA) protein [Candidatus
Desulforudis audaxviator MP104C]
Length = 127
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 27/66 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V++ + T+++ ++L G VI + NG ++ E+ +
Sbjct: 47 LDDVEVDVSAELGQTAMTVREFLSLHEGSVIGLDRAAGETIDVVVNGVKLARGEVLVIND 106
Query: 295 NYTIRI 300
+ +RI
Sbjct: 107 LFVLRI 112
>gi|116514990|ref|YP_802619.1| hypothetical protein BCc_047 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|116256844|gb|ABJ90526.1| flagellar motor switch protein, C-ring protein [Buchnera aphidicola
str. Cc (Cinara cedri)]
Length = 134
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ V + ++ KK T+++++ K G ++ + N I EL
Sbjct: 59 ALSSIPVYLTIELSKKKITIQELLQFKKGSILELEDNINKPLNIFINNYLIAIGELVVNN 118
Query: 294 KNYTIRITDRI 304
Y ++IT +
Sbjct: 119 DCYGVQITKLL 129
>gi|254473327|ref|ZP_05086724.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
gi|211957443|gb|EEA92646.1| flagellar motor switch protein FliN [Pseudovibrio sp. JE062]
Length = 138
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
+ S++ +D + V++ + + ++ L G VIP HR +
Sbjct: 44 EKGVSDENVDRNLDAVLGIPVDMQVVLGSATMPVASLLKLGRGAVIPLDHRVGEPVDIVV 103
Query: 280 NGKEIYSCELGRV---GKNYTIRITDRINFD 307
NG+ + E+ V + + +T+ +
Sbjct: 104 NGRTVARGEIVVVEDDNSRFGVSLTEIVGAK 134
>gi|327542145|gb|EGF28638.1| flagellar motor switch protein fliN [Rhodopirellula baltica WH47]
Length = 99
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++++K S + K ++ ++ + KK L+ ++ L G ++ F
Sbjct: 5 ATEDKPTEPSPPTSSMYKEKVLKIRTTVNVTLAEKKEPLRKILALVPGSMLTFDVHCDRP 64
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR-INFDQ 308
L A G I + E ++G + +R+ + + +
Sbjct: 65 LTLRAGGHPIATGETVKIGDKFGLRVREIGVPKED 99
>gi|170704156|ref|ZP_02894757.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria IOP40-10]
gi|170130934|gb|EDS99660.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria IOP40-10]
Length = 193
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 10/192 (5%)
Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170
+ A+ + +++ L + + +E + +
Sbjct: 1 MFFATPVATRADTRAAYASLPVPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNL 59
Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230
R+ I + + + +P L T + S+ + +
Sbjct: 60 LCVARVPAAPAWEITGRPSGNRLTVERIREMP---LEPTRTDTPSATTHDASADDA---- 112
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCEL 289
R L V++ + L ++ L+ G VI L ANG I + +L
Sbjct: 113 -PRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGQL 171
Query: 290 GRVGKNYTIRIT 301
VG+ +R+
Sbjct: 172 IAVGQKLGVRVV 183
>gi|157373223|ref|YP_001471823.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
gi|157315597|gb|ABV34695.1| flagellar motor switch protein FliN [Shewanella sediminis HAW-EB3]
Length = 118
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+QL V + + + +L ++ + G V+ + NG + E+ V
Sbjct: 41 HQLPVQVTLELASAEMSLGELTRMGEGDVVALDRMVGEPLDIRVNGALLGRGEVVEVNGR 100
Query: 296 YTIRITDR 303
Y +R+ +
Sbjct: 101 YGVRLLEV 108
>gi|149194013|ref|ZP_01871111.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
gi|149135966|gb|EDM24444.1| flagellar motor switch protein [Caminibacter mediatlanticus TB-2]
Length = 101
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 33/74 (44%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
V ++ I + ++++++ LK G +I A + NG+ I E+
Sbjct: 17 NLIDTEVLFESDIGRVEMSIREILDLKRGSIIDLKKPAGESAEVYVNGRIIGKGEVMVYE 76
Query: 294 KNYTIRITDRINFD 307
KN IR+ + ++ +
Sbjct: 77 KNLAIRLNEVLDAN 90
>gi|304311654|ref|YP_003811252.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
gi|301797387|emb|CBL45607.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
Length = 379
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + ++ + TL ++ L+ G V P + + N + EL +G
Sbjct: 305 LSQLPVELSLQVGQLQITLGELENLQPGYVFPMSSQNDELTLTVLVNQQPAGLGELVSIG 364
Query: 294 KNYTIRITD 302
+RIT+
Sbjct: 365 NQLGVRITE 373
>gi|15611598|ref|NP_223249.1| flagellar motor switch protein [Helicobacter pylori J99]
gi|208434503|ref|YP_002266169.1| flagellar switch protein [Helicobacter pylori G27]
gi|210134785|ref|YP_002301224.1| flagellar motor switch protein [Helicobacter pylori P12]
gi|217032361|ref|ZP_03437856.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
gi|254779424|ref|YP_003057529.1| flagellar motor switch protein [Helicobacter pylori B38]
gi|298736276|ref|YP_003728802.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
gi|4155061|gb|AAD06097.1| putative FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
gi|208432432|gb|ACI27303.1| flagellar switch protein [Helicobacter pylori G27]
gi|210132753|gb|ACJ07744.1| flagellar motor switch protein [Helicobacter pylori P12]
gi|216945928|gb|EEC24544.1| hypothetical protein HPB128_25g9 [Helicobacter pylori B128]
gi|254001335|emb|CAX29320.1| Flagellar motor switch protein fliN [Helicobacter pylori B38]
gi|298355466|emb|CBI66338.1| flagellar motor switch protein FliN [Helicobacter pylori B8]
gi|317009438|gb|ADU80018.1| flagellar motor switch protein [Helicobacter pylori India7]
Length = 123
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT------YQLNVNIDTRINLKKTTLK 254
+P+ K + + ++ + +L + + + + L
Sbjct: 1 MPETEANKLKIAEKEKEKANKERELELSTYLEELICDYKNLLDMEIVFSAELGSTQIPLL 60
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
++ + G VI NG+ I E+ +N IR+ + ++ +
Sbjct: 61 QILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIRLNEILDSN 113
>gi|332162916|ref|YP_004299493.1| flagellar motor switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667146|gb|ADZ43790.1| Flagellar motor switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862339|emb|CBX72499.1| hypothetical protein YEW_GP28300 [Yersinia enterocolitica W22703]
Length = 272
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/206 (12%), Positives = 68/206 (33%), Gaps = 16/206 (7%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQ--LYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
N +L++ +L + G + E + N + E +L + +I+ ++
Sbjct: 66 GNIAFDIERSLLLNILNDYYGLTKEKNNSSIVDNTPKTQTEDRLKNKLSIEIADLILN-- 123
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
P + I + ++ + F L+I + +
Sbjct: 124 ------QPMFGEPLVIKNNNATPIV---NWSYRMDFLLKDYEDGG-FTLLIDTPHVDRLL 173
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + F + QL + + ++++ + T D++ +K G +IP
Sbjct: 174 NTLHTESKEKKKTQTLSEKQFNQLVSQLPIRLTSQLSCSELTFFDLMAIKEGDIIPASLP 233
Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
E+ + + ++S +
Sbjct: 234 ERFP--VFIGKQPLFSAVVTESRGKL 257
>gi|209964122|ref|YP_002297037.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|7025357|gb|AAF35847.1|AF220003_1 polar flagellar motor switch protein FpiN [Rhodospirillum centenum]
gi|209957588|gb|ACI98224.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 108
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 27/76 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
Y + V I + + ++ L G V+ + + N + + E+ V
Sbjct: 32 ESVYDIPVQISAVLGKCTMQVSSLMKLGRGAVVELDRKVGEAIDIYVNNRLVARGEVVVV 91
Query: 293 GKNYTIRITDRINFDQ 308
+ +T+ I D+
Sbjct: 92 EDRLGVTMTEIIKSDR 107
>gi|156976197|ref|YP_001447103.1| flagellar motor switch/type III secretory pathway protein [Vibrio
harveyi ATCC BAA-1116]
gi|156527791|gb|ABU72876.1| hypothetical protein VIBHAR_04968 [Vibrio harveyi ATCC BAA-1116]
Length = 122
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ +
Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104
Query: 296 YTIRITDRINF 306
Y +R+ + +
Sbjct: 105 YGLRLINVHDS 115
>gi|15616703|ref|NP_239915.1| flagellar motor switch protein FliN [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386788|sp|P57183|FLIN_BUCAI RecName: Full=Flagellar motor switch protein FliN
gi|25403545|pir||A84939 flagellar motor switch protein fliN [imported] - Buchnera sp.
(strain APS)
gi|10038766|dbj|BAB12801.1| flagellar motor switch protein fliN [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 133
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + VNI + + +KD + G ++ K + NG I S E+
Sbjct: 51 KKTILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVV 110
Query: 292 VGKNYTIRITDRINF 306
+ + Y IRIT+ N
Sbjct: 111 LEEKYGIRITNIKNS 125
>gi|219681459|ref|YP_002467844.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682015|ref|YP_002468399.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471134|ref|ZP_05635133.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219621748|gb|ACL29904.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624302|gb|ACL30457.1| flagellar motor switch protein FliN [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085823|gb|ADP65905.1| flagellar motor switch protein FliN [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086396|gb|ADP66477.1| flagellar motor switch protein FliN [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086975|gb|ADP67055.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087552|gb|ADP67631.1| flagellar motor switch protein FliN [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 133
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + VNI + + +KD + G ++ K + NG I S E+
Sbjct: 51 KKTILNVPVNITVELGTSRIKIKDFLKFSKGSMLILNESIKEPLNIFMNGHLIASGEIVV 110
Query: 292 VGKNYTIRITDRINF 306
+ + Y IRIT+ N
Sbjct: 111 LEEKYGIRITNIKNS 125
>gi|115523173|ref|YP_780084.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
gi|115517120|gb|ABJ05104.1| flagellar motor switch protein FliN [Rhodopseudomonas palustris
BisA53]
Length = 132
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-- 292
++ V + + + D++ L G VIP HR + NG+ + + V
Sbjct: 51 ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVED 110
Query: 293 -GKNYTIRITDRINFD 307
+ + +T+ + +
Sbjct: 111 ENSRFGVSLTEIVGGN 126
>gi|27381990|ref|NP_773519.1| flagellar motor switch protein [Bradyrhizobium japonicum USDA 110]
gi|27355160|dbj|BAC52144.1| fliN [Bradyrhizobium japonicum USDA 110]
Length = 124
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V + + + +++ L G V+P HR + NG+ + E+ V
Sbjct: 42 DAILRIPVTMQVVLGSATIPVANLMKLGRGAVVPLDHRVGEPVDVVVNGRIVARGEVVVV 101
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 102 EEDNSRFGVSLTEIVGP 118
>gi|254228803|ref|ZP_04922226.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
sp. Ex25]
gi|262396478|ref|YP_003288331.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
gi|151938750|gb|EDN57585.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
sp. Ex25]
gi|262340072|gb|ACY53866.1| flagellar motor switch protein FliN [Vibrio sp. Ex25]
Length = 123
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ V
Sbjct: 46 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDK 105
Query: 296 YTIRITDRINF 306
Y +R+ D +
Sbjct: 106 YGLRLIDVHDS 116
>gi|317010802|gb|ADU84549.1| flagellar motor switch protein [Helicobacter pylori SouthAfrica7]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|258622512|ref|ZP_05717534.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|262173378|ref|ZP_06041055.1| putative flagellar motor switch protein [Vibrio mimicus MB-451]
gi|258585212|gb|EEW09939.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|261890736|gb|EEY36723.1| putative flagellar motor switch protein [Vibrio mimicus MB-451]
Length = 267
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/209 (12%), Positives = 59/209 (28%), Gaps = 33/209 (15%)
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--QC 149
F+ N ++I L + GA+ + + L+ + ++ +R I L
Sbjct: 87 GGRVFVHADNVVLIKLADRFYGAN----EERDSTKLTNSDLRIQERISKLIITKLAPDDM 142
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
+ + +N + + + A L + +
Sbjct: 143 WA-------------------MSDFAPTNGVGLHAELIIQFDGFAGRVHLKLDSNLIQTL 183
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ DL PF V ++ + K L D+V+LK G +
Sbjct: 184 VEQL------ELQSNTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIEL 237
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + ++S + +
Sbjct: 238 PSDIPISI--GHQPLFSGRIAERDDQLVL 264
>gi|28901396|ref|NP_801051.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|153835984|ref|ZP_01988651.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|260362950|ref|ZP_05775819.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|260880237|ref|ZP_05892592.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|260895354|ref|ZP_05903850.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|260901179|ref|ZP_05909574.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|28809943|dbj|BAC62884.1| flagellar motor switch protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149750738|gb|EDM61483.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ3810]
gi|308085589|gb|EFO35284.1| flagellar motor switch protein [Vibrio parahaemolyticus Peru-466]
gi|308092578|gb|EFO42273.1| flagellar motor switch protein [Vibrio parahaemolyticus AN-5034]
gi|308109379|gb|EFO46919.1| flagellar motor switch protein [Vibrio parahaemolyticus AQ4037]
gi|308111949|gb|EFO49489.1| flagellar motor switch protein [Vibrio parahaemolyticus K5030]
gi|328469330|gb|EGF40276.1| flagellar motor switch protein [Vibrio parahaemolyticus 10329]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ V
Sbjct: 46 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLLGHAEVVVVNDK 105
Query: 296 YTIRITDRINF 306
Y +R+ D +
Sbjct: 106 YGLRLIDVHDS 116
>gi|308184367|ref|YP_003928500.1| flagellar motor switch protein [Helicobacter pylori SJM180]
gi|308060287|gb|ADO02183.1| flagellar motor switch protein [Helicobacter pylori SJM180]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|307637271|gb|ADN79721.1| flagellar motor switch protein [Helicobacter pylori 908]
gi|317014005|gb|ADU81441.1| flagellar motor switch protein [Helicobacter pylori Gambia94/24]
gi|325995862|gb|ADZ51267.1| Flagellar motor switch protein [Helicobacter pylori 2018]
gi|325997457|gb|ADZ49665.1| Flagellar motor switch protein [Helicobacter pylori 2017]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|158422265|ref|YP_001523557.1| FliN protein [Azorhizobium caulinodans ORS 571]
gi|158329154|dbj|BAF86639.1| FliN protein [Azorhizobium caulinodans ORS 571]
Length = 120
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V + + + +++ L G ++P HR + NG+ I E+ V
Sbjct: 38 ESVMRIPVLLQVVLGSASMPVANLMKLGRGAIVPLDHRVGEPVDVVVNGRIIARGEVMVV 97
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 98 EEDNSRFGVTLTEIVGP 114
>gi|154252628|ref|YP_001413452.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
DS-1]
gi|154156578|gb|ABS63795.1| flagellar motor switch protein FliN [Parvibaculum lavamentivorans
DS-1]
Length = 117
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
+ +P + + + + ++ E + + + VN+ + + +++
Sbjct: 8 VALPDLANIDSLPPAEAGPSEHEEEQVRTAQDL-EAVFDVPVNVSAVLGKTHIEVSNLLK 66
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L G ++ + + N + + E+ V + +T+ +
Sbjct: 67 LGRGAIVELDRKVGEAIDIYVNDRLVARGEVVVVDDRLGVTMTEIVKG 114
>gi|217033529|ref|ZP_03438958.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
gi|216944054|gb|EEC23485.1| hypothetical protein HP9810_905g48 [Helicobacter pylori 98-10]
gi|297379785|gb|ADI34672.1| flagellar motor switch protein FliN [Helicobacter pylori v225d]
gi|308061915|gb|ADO03803.1| flagellar motor switch protein [Helicobacter pylori Cuz20]
gi|308063626|gb|ADO05513.1| flagellar motor switch protein [Helicobacter pylori Sat464]
gi|317177583|dbj|BAJ55372.1| flagellar motor switch protein [Helicobacter pylori F16]
gi|317179052|dbj|BAJ56840.1| flagellar motor switch protein [Helicobacter pylori F30]
gi|317181899|dbj|BAJ59683.1| flagellar motor switch protein [Helicobacter pylori F57]
gi|332673619|gb|AEE70436.1| flagellar switch protein [Helicobacter pylori 83]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|207091787|ref|ZP_03239574.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_AG0C1]
gi|317012399|gb|ADU83007.1| flagellar motor switch protein [Helicobacter pylori Lithuania75]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|188527569|ref|YP_001910256.1| flagellar motor switch protein [Helicobacter pylori Shi470]
gi|188143809|gb|ACD48226.1| flagellar motor switch protein [Helicobacter pylori Shi470]
gi|261838173|gb|ACX97939.1| flagellar motor switch protein [Helicobacter pylori 51]
gi|315586731|gb|ADU41112.1| flagellar switch protein [Helicobacter pylori 35A]
gi|317180355|dbj|BAJ58141.1| flagellar motor switch protein [Helicobacter pylori F32]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|15645209|ref|NP_207379.1| flagellar motor switch protein [Helicobacter pylori 26695]
gi|2313688|gb|AAD07636.1| flagellar switch protein (fliN) [Helicobacter pylori 26695]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|90422604|ref|YP_530974.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
gi|90104618|gb|ABD86655.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
Length = 131
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-- 292
++ V + + + D++ L G VIP HR + NG+ + + V
Sbjct: 51 ILRIPVTVQVLLGSATMPVADLMKLGRGAVIPLDHRVGEPVEVVVNGRIVARGAVVVVED 110
Query: 293 -GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 111 ENSRFGVSLTEIVGG 125
>gi|239815265|ref|YP_002944175.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
gi|239801842|gb|ACS18909.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
Length = 151
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
++Q + +D +Q+ + + ++ +++ K QV+
Sbjct: 57 AANQGGDASILKDWNP-----LHQIKARLQVCVGAVSLSVGELLGAKEHQVLRLDREIDH 111
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITD 302
L+ GK + +L V ++ +RIT+
Sbjct: 112 PVDLTIEGKVVARGQLVAVDGHFAVRITE 140
>gi|147678413|ref|YP_001212628.1| flagellar motor switch/type III secretory pathway protein
[Pelotomaculum thermopropionicum SI]
gi|146274510|dbj|BAF60259.1| flagellar motor switch/type III secretory pathway protein
[Pelotomaculum thermopropionicum SI]
Length = 126
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 205 TLLKTTLISLSSQNKSENQSE------------DLIDPFARKTYQLNVNIDTRINLKKTT 252
T + + + + + D + + + I +
Sbjct: 3 TEEEIRSFLARASSSDADIKKVQFPPLTPVKGMDRVKTSMSHLEDVQIEISVELGQTVMK 62
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+++V+ L+ G VI + N + E+ + ++ +RIT
Sbjct: 63 VREVLGLEQGSVIRLDKAIGEAVEVVLNEQRFARGEVVVINDSFGVRITSI 113
>gi|91223206|ref|ZP_01258472.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269967105|ref|ZP_06181172.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
gi|91192019|gb|EAS78282.1| flagellar motor switch protein [Vibrio alginolyticus 12G01]
gi|269828242|gb|EEZ82509.1| flagellar motor switch protein [Vibrio alginolyticus 40B]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ V
Sbjct: 46 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELEKLNGEPLDVKVNGSLMGHAEVVVVNDK 105
Query: 296 YTIRITDRINF 306
Y +R+ D +
Sbjct: 106 YGLRLIDVHDS 116
>gi|261839587|gb|ACX99352.1| flagellar motor switch protein [Helicobacter pylori 52]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|108562988|ref|YP_627304.1| flagellar motor switch protein [Helicobacter pylori HPAG1]
gi|107836761|gb|ABF84630.1| flagellar switch protein [Helicobacter pylori HPAG1]
Length = 123
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIVFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|258624665|ref|ZP_05719600.1| putative flagellar motor switch protein [Vibrio mimicus VM603]
gi|258583057|gb|EEW07871.1| putative flagellar motor switch protein [Vibrio mimicus VM603]
Length = 267
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 33/209 (15%)
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN--QC 149
F+ N ++I L + GA+ + + L+ + ++ +R I L
Sbjct: 87 GGRVFVHADNVVLIKLADRFYGAN----EERDSTKLTNSDLRIQERISKLIITKLAPDDM 142
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
+ +P N + + + A L + +
Sbjct: 143 W-AISDFAPT------------------NGVGLHAELIIQFDGFAGRVHLKLDSNLIQTL 183
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ DL PF V ++ + K L D+V+LK G +
Sbjct: 184 VEQL------ELQSNTDLYQPFCHSLKSTRVRLNVVLIKKIMPLSDIVSLKPGDIFSIEL 237
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + ++S + +
Sbjct: 238 PSDIPISI--GHQPLFSGRIAERDDQLVL 264
>gi|217976218|ref|YP_002360365.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
gi|217501594|gb|ACK49003.1| flagellar motor switch protein FliN [Methylocella silvestris BL2]
Length = 110
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V + + + ++ L G VIP HR + NG+ I E+ V
Sbjct: 29 ETILRIPVVVQVVLGSAVMPVSHLLKLGRGAVIPLDHRVGEPVDVVVNGRIIARGEIVVV 88
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 89 EDDNSRFGVSLTEIVGP 105
>gi|319781691|ref|YP_004141167.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167579|gb|ADV11117.1| flagellar motor switch protein FliN [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 128
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+ + + + + + + + V+I + + + D++ L+ G
Sbjct: 19 RAIEELRGVLHEEEQRPDAAFRAASSANSSVIMNIPVDIQIILGSTEMPVSDLMALQKGS 78
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308
+ R + NG++I E+ + + IR+T+ I +
Sbjct: 79 TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126
>gi|258622511|ref|ZP_05717533.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|258624666|ref|ZP_05719601.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|262173377|ref|ZP_06041054.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
gi|258583058|gb|EEW07872.1| flagellar motor switch protein [Vibrio mimicus VM603]
gi|258585211|gb|EEW09938.1| flagellar motor switch protein [Vibrio mimicus VM573]
gi|261890735|gb|EEY36722.1| flagellar motor switch protein FliN [Vibrio mimicus MB-451]
Length = 123
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ TL +++ G VI + NG + E+ V
Sbjct: 45 KGIPVVVTLEVASKEITLGELMKAGEGTVIELDKLNGEPLDVKVNGSLMGHAEIVIVNDK 104
Query: 296 YTIRITDRINF 306
Y + +TD ++
Sbjct: 105 YGLHLTDVLSS 115
>gi|295690199|ref|YP_003593892.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
ATCC 21756]
gi|295432102|gb|ADG11274.1| surface presentation of antigens (SPOA) protein [Caulobacter segnis
ATCC 21756]
Length = 83
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +NV I + ++ ++ + G VIP + + AN I E+
Sbjct: 1 MTQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60
Query: 292 VGKNYTIRITD 302
I++T
Sbjct: 61 SDDRIAIQVTR 71
>gi|254503358|ref|ZP_05115509.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
gi|222439429|gb|EEE46108.1| flagellar motor switch protein FliN [Labrenzia alexandrii DFL-11]
Length = 130
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VNI + + +++ L G VIP HR + NG+ I E+ V
Sbjct: 47 DTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVV 106
Query: 293 ---GKNYTIRITDRINFDQKSLK 312
+ + +T+ I+ L+
Sbjct: 107 EDDNSRFGVSLTEIISSQTSPLE 129
>gi|269960158|ref|ZP_06174534.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
gi|269835129|gb|EEZ89212.1| flagellar motor switch protein [Vibrio harveyi 1DA3]
Length = 122
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D++ G VI + NG + E+ +
Sbjct: 45 KSIPVTVTLEVASKEIPLGDLMKAGEGTVIELDKLNGEPLDVKVNGSLMGQAEVVVINDK 104
Query: 296 YTIRITDRINF 306
Y +R+ + +
Sbjct: 105 YGLRLINVHDS 115
>gi|225181599|ref|ZP_03735040.1| surface presentation of antigens (SPOA) protein [Dethiobacter
alkaliphilus AHT 1]
gi|225167707|gb|EEG76517.1| surface presentation of antigens (SPOA) protein [Dethiobacter
alkaliphilus AHT 1]
Length = 150
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V +D + T+++++ L+ +I A L NGK + S E+ + N
Sbjct: 72 ESVPVTLDLELGAATLTVREILALQKDSIIRLDKLAGENAALCVNGKPLASGEVVVINDN 131
Query: 296 YTIRITDR 303
+ R+ +
Sbjct: 132 FGFRVAEV 139
>gi|170741400|ref|YP_001770055.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
gi|168195674|gb|ACA17621.1| flagellar motor switch protein FliN [Methylobacterium sp. 4-46]
Length = 125
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ V I + + +++ L G ++P HR + NG+ I E+ V
Sbjct: 43 DSVLRIPVLIQVVLGSATMPVANLMKLGRGAIVPLDHRVGEPVDIMVNGRVIARGEVVVV 102
Query: 293 ---GKNYTIRITDRINF 306
+ + +T+ +
Sbjct: 103 EEDNSRFGVSLTEIVGP 119
>gi|171323088|ref|ZP_02911720.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171091517|gb|EDT37147.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 193
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 10/192 (5%)
Query: 111 LLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK 170
+ A+ + +++ L + + +E + +
Sbjct: 1 MFFATPAATRADTRAAYASLPVPLVFEIGRTELT-MAELADVVGGDIIAIEHWRAHEQNL 59
Query: 171 KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP 230
R+ I + + + +P L T + S+ + +
Sbjct: 60 LCVARVPAAPAWEITGRPSGNRLTVERIREMP---LEPTRTDTPSATTHDASADDA---- 112
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCEL 289
R L V++ + L ++ L+ G VI L ANG I + +L
Sbjct: 113 -PRSLDGLAVDLRFELPPTSIPLGELGALQPGAVIELQQGINQSVIHLVANGMLIGTGQL 171
Query: 290 GRVGKNYTIRIT 301
VG+ +R+
Sbjct: 172 IAVGQKLGVRVV 183
>gi|224436496|ref|ZP_03657510.1| flagellar motor switch protein [Helicobacter cinaedi CCUG 18818]
gi|313143005|ref|ZP_07805198.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
18818]
gi|313128036|gb|EFR45653.1| flagellar motor switch protein FliN [Helicobacter cinaedi CCUG
18818]
Length = 116
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K L +++ + G +I NG+ I E+ +
Sbjct: 34 LLDMEVIFNAELGNTKIALGEILRFEKGSIIDLGKPAGESIETFINGRVIGKGEVMVYER 93
Query: 295 NYTIRITDRINFD 307
N IRI + ++ +
Sbjct: 94 NLAIRINEILDSN 106
>gi|167647122|ref|YP_001684785.1| hypothetical protein Caul_3160 [Caulobacter sp. K31]
gi|167349552|gb|ABZ72287.1| surface presentation of antigens (SPOA) protein [Caulobacter sp.
K31]
Length = 83
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +NV I + ++ ++ + G VIP + + AN I E+
Sbjct: 1 MSQVNAVNVEISVLLGRSILPMQQLLRMGRGAVIPLDAKTNDEVWILANNHPIARGEIQI 60
Query: 292 VGKNYTIRITD 302
I++T
Sbjct: 61 SDDRIAIQVTR 71
>gi|21672366|ref|NP_660433.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008469|sp|Q8KA38|FLIN_BUCAP RecName: Full=Flagellar motor switch protein FliN
gi|21622971|gb|AAM67644.1| flagellar motor switch protein FliN [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 133
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + + +NI + K +KD++ G ++ +++ + AN K I E+
Sbjct: 51 KKILFDIEMNITVELGKSKVKIKDLLNFSKGSMLFLQRKKEDPLKVFANNKLIALGEIVF 110
Query: 292 VGKNYTIRITDR 303
Y IRI
Sbjct: 111 SNNKYGIRIISI 122
>gi|310823556|ref|YP_003955914.1| type III secretion system apparatus protein yscq/hrcq [Stigmatella
aurantiaca DW4/3-1]
gi|309396628|gb|ADO74087.1| Type III secretion system apparatus protein YscQ/HrcQ [Stigmatella
aurantiaca DW4/3-1]
Length = 379
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 26/276 (9%)
Query: 18 LARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L R LG++ + ++ + L + + ++ K
Sbjct: 22 LTRAHVVLGERPQVSRMGQQALQSICESLGRELGCDVSAASHVAEAVVVPAK------GL 75
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKR 137
+ VF LS+ + + ++ LE L G P L+ +E+
Sbjct: 76 SLSAVFVFLELSATGGSAVLELEPPVLFAALERLAGGPARPGPMT---RLTRLEEASLAY 132
Query: 138 TIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSF 197
+ + P L ++ + + + + +++ +
Sbjct: 133 LVLAALMAFRTQGELQRWWGPRLAGM-TVNRMDALARLDGRKAHLGVELVLSVGQRTAGA 191
Query: 198 VLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVV 257
L++P L T ++ S + ++ + ++ ++
Sbjct: 192 RLVLPAVVLESTCRKLPVQRDSSRAP----------EILAASLGARCFLGCRQLLPSELE 241
Query: 258 TLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
TL +G V+ F L+ G L G
Sbjct: 242 TLAVGDVVVF-----EGVRLT-GGAPRGPGRLVTRG 271
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 25/67 (37%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V ++ + L ++ TL+ GQ++P +L + + EL +
Sbjct: 313 PVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGA 372
Query: 299 RITDRIN 305
RI +
Sbjct: 373 RILSLLP 379
>gi|148260473|ref|YP_001234600.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
gi|146402154|gb|ABQ30681.1| flagellar motor switch protein FliN [Acidiphilium cryptum JF-5]
Length = 132
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
L +S + D Y + V + + + ++ L G V+
Sbjct: 30 LPLAPVSRRTAGDGPETQRPSRDL--EAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVE 87
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFDQK 309
+ + N + I E+ + + I +T+ + D+
Sbjct: 88 LDRKAGDPIDIFVNNRLIARGEVVMLDETKLGITMTEIVKSDRN 131
>gi|288962690|ref|YP_003452984.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
gi|288914956|dbj|BAI76440.1| flagellar motor switch protein FliN/FliY [Azospirillum sp. B510]
Length = 112
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
Y + V++ + + ++ L G V+ + + N + + E+
Sbjct: 32 MNAIYNVPVDVQVVLGRTSMLVAQLLKLGRGAVLELERKVDEPVEVLVNHRLVARGEVVI 91
Query: 292 VGK-NYTIRITDRINFDQKS 310
V + +T+ + + +
Sbjct: 92 VEDQRLGVTLTEIVRTELEI 111
>gi|46447034|ref|YP_008399.1| type III secretion system protein [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400675|emb|CAF24124.1| putative flagellar motor switch protein (= type III secretion
translocase SctQ) [Candidatus Protochlamydia amoebophila
UWE25]
Length = 445
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 34/67 (50%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
Q+ VN+ + + ++ ++ L+ G ++ + + L+ NGK + EL R+G+
Sbjct: 376 NQIPVNLTVEVGRIQMSMDHLLKLEPGNMLELNIKPEDGVDLTINGKIVGRGELLRIGEV 435
Query: 296 YTIRITD 302
+R+ +
Sbjct: 436 LGVRVLE 442
>gi|171320709|ref|ZP_02909722.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171094036|gb|EDT39134.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 272
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/236 (9%), Positives = 66/236 (27%), Gaps = 22/236 (9%)
Query: 83 FSQASLSSWSSNFFI-GCSNNLVIT----LLENLLGASHETIPQLYNRSLSTVE--KKLA 135
+ + WSS + C +L +L+ L + + + + + + +
Sbjct: 47 IAPLAPPPWSSAAHVWSCGPHLQWATEPRMLDRL---ARRALDLPDDFAATPADHCADVL 103
Query: 136 KRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVAS 195
+ ++ + +S D + S + + + N
Sbjct: 104 RAFGKSMTDDMAAALSAICG--AAAPDARRLPQSDAAKPLASRYGGVHVRLVLGPSNARL 161
Query: 196 SFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKD 255
S + P + ++ + ++ + R+ + + +
Sbjct: 162 SVLFAAPFWWARHVRRDAAPTRANTLTPRTAALESIRTRV-------CARLGVVELPVAQ 214
Query: 256 VVTLKIGQVIPFLHREKTCAILSANG---KEIYSCELGRVGKNYTIRITDRINFDQ 308
++ L G V+ + L + LGR + +I++ +
Sbjct: 215 LLDLMPGDVLVIAEQLDPVVSLVTGNTGQVPVGFGRLGRTDRQLSIQLQSLVEPKD 270
>gi|170750204|ref|YP_001756464.1| surface presentation of antigens (SPOA) protein [Methylobacterium
radiotolerans JCM 2831]
gi|170656726|gb|ACB25781.1| surface presentation of antigens (SPOA) protein [Methylobacterium
radiotolerans JCM 2831]
Length = 122
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V++ + + L ++ + G VI + + AN I ++ G ++
Sbjct: 29 KVDLTVVLGRARMPLHMLLRMGRGAVIELEASDSDMVEILANDHPIARGQIVVTGDRISV 88
Query: 299 RITDRINFDQKSLK 312
+T+ I ++
Sbjct: 89 EVTELIRKAASIVE 102
>gi|167949199|ref|ZP_02536273.1| flagellar motor switch protein FliM [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 111
Score = 63.1 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 206 LLKTTLISLSS-QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + Q+ + E + + + + + TL+++ L G +
Sbjct: 1 MEPIRELLDAGVQSDRGERDERWERSLREEILGAKIELKSILTETCVTLRELSKLDKGDI 60
Query: 265 IPFLHREKTCAILSANGKEI 284
IP ++A +
Sbjct: 61 IPIELP--EEVEVTAAEVPV 78
>gi|260893866|ref|YP_003239963.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
KC4]
gi|260866007|gb|ACX53113.1| surface presentation of antigens (SPOA) protein [Ammonifex degensii
KC4]
Length = 114
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 30/76 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + T+++++ L+ G VI L +G++ E+ +
Sbjct: 28 ELLHGVTLEVTALLGEATLTVQELLELREGSVIRLDRVAGEAVDLLLDGQKFGRGEVMVL 87
Query: 293 GKNYTIRITDRINFDQ 308
+ + +R+ +
Sbjct: 88 NERFVVRVLQVFPPQE 103
>gi|118589948|ref|ZP_01547352.1| probable flagellar motor switch protein [Stappia aggregata IAM
12614]
gi|118437445|gb|EAV44082.1| probable flagellar motor switch protein [Stappia aggregata IAM
12614]
Length = 130
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VNI + + +++ L G VIP HR + NG+ I E+ V
Sbjct: 47 DTILGIPVNIQVVLGSATMLVSNLLKLGRGAVIPLNHRVGEPIDIVVNGRVIARGEVVVV 106
Query: 293 ---GKNYTIRITDRINFD 307
+ + +T+ I+
Sbjct: 107 EDDNSRFGVSLTEIISAQ 124
>gi|153003619|ref|YP_001377944.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. Fw109-5]
gi|152027192|gb|ABS24960.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. Fw109-5]
Length = 334
Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 49/261 (18%)
Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L + + LV+ L++ L G E + L++VE +
Sbjct: 74 VDLPALPGTASVEVEPALVVALVDRLAGGKGEALGATS---LTSVESAALELFALAALDG 130
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNT--------------NRLSNEFVTTINMNMTIE 191
Q + + SP L L V + +
Sbjct: 131 ACQLAAVEETLSPRLCRATPEPSAALAVELTLTAGELSGRARLLLPAAAVRALRGAPAFD 190
Query: 192 NVASSFVLII------------------------------PQETLLKTTLISLSSQNKSE 221
A+ L+ P+ +L
Sbjct: 191 GDAAGIGLVASVRGGAAALRTEELEALAAGDVVVLDGGAGPRALVLPGGARLSGRHED-- 248
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
++ QL V ++ + + TL ++ L+ G ++P + L A
Sbjct: 249 GTFHVEEIEMTQRMAQLPVVLEVELARVEVTLAELARLEPGGILPLALDRRGLVTLRAGE 308
Query: 282 KEIYSCELGRVGKNYTIRITD 302
+ + EL V +RI D
Sbjct: 309 RAVARGELVDVDGAVGVRIID 329
>gi|209963529|ref|YP_002296444.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|209956995|gb|ACI97631.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 119
Score = 62.7 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R + + VN+ + + ++ L G V+ + + N + I E+ V
Sbjct: 40 RAIFNVPVNVQVVLGRTTMPVSQLLKLGRGAVVELNRKVGEAVDVFVNDRLIARGEVVIV 99
Query: 293 -GKNYTIRITDRINFD 307
+ +T+ + +
Sbjct: 100 DDGRLGVTMTEIVKAE 115
>gi|213023115|ref|ZP_03337562.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 67
Score = 62.7 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L ++ LK G V+P I +G + + + G V Y +R+ IN
Sbjct: 3 LRLSQILKLKPGDVLPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 56
>gi|330963707|gb|EGH63967.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 356
Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
L + + ++ + TL + + G ++P L NG+ I +L
Sbjct: 281 LDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLV 340
Query: 291 RVGKNYTIRI 300
+G +R+
Sbjct: 341 SIGDGLGVRL 350
>gi|149189861|ref|ZP_01868141.1| flagellar motor switch protein [Vibrio shilonii AK1]
gi|148836347|gb|EDL53304.1| flagellar motor switch protein [Vibrio shilonii AK1]
Length = 122
Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K+ L D+++ G +I + NG + E+ V +
Sbjct: 45 KNIPVTVTLEVASKEVALGDLMSAGEGSIIELDKLNGEPLDVKVNGSLMGHAEVVVVNEK 104
Query: 296 YTIRITDRINF 306
Y +R+ D ++
Sbjct: 105 YGLRLIDVVDS 115
>gi|330876195|gb|EGH10344.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 356
Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
L + + ++ + TL + + G ++P L NG+ I +L
Sbjct: 281 LDTSLDDLPLTLVCQLGTVELTLAQLREMAPGSLLPLATPAHDEVDLMVNGRRIGRGQLV 340
Query: 291 RVGKNYTIRI 300
+G +R+
Sbjct: 341 SIGDGLGVRL 350
>gi|330809246|ref|YP_004353708.1| flagellar motor switch protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327377354|gb|AEA68704.1| Putative Flagellar motor switch protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 101
Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
L + + Q+ + + V + ++ ++ ++ LK G V
Sbjct: 9 ELEEARVAVNDGQSPLIKRD-------MNLIKHVVVELVVQLGHASMSVDELFALKAGDV 61
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ L + A L +GK + L V N+ I++T+ +
Sbjct: 62 VKLLEQVHEPASLCLDGKPVARGNLVAVDDNFGIQLTEIL 101
>gi|222147562|ref|YP_002548519.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
gi|221734550|gb|ACM35513.1| flagellar motor switch protein FliN [Agrobacterium vitis S4]
Length = 220
Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 7/78 (8%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L+ G +I + + NG+ I E+ +
Sbjct: 141 DLIMDIPIDVQIVLGSSRMPVSGLMNLEEGAIIALDKKIGEPVEIMVNGRRIARGEITVL 200
Query: 293 GK---NYTIRITDRINFD 307
+ +++ + ++
Sbjct: 201 ENDDTRFGVKLIEVMSTK 218
>gi|94968663|ref|YP_590711.1| flagellar motor switch FliN [Candidatus Koribacter versatilis
Ellin345]
gi|94550713|gb|ABF40637.1| Flagellar motor switch FliN [Candidatus Koribacter versatilis
Ellin345]
Length = 252
Score = 62.7 bits (151), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 28/269 (10%)
Query: 36 SSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNF 95
+ + + E+ + + S F
Sbjct: 5 EHFFEQWAGAICDTLRPITGKPWTSRVNKADELGAGD-----TESIFLTFSVSEPLSGMF 59
Query: 96 FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE 155
S + + L L S + +++ Q + +
Sbjct: 60 RSALSRSAALQL-NFLFTGSESSEWNTE-------QQETIDELSRQFAGQFAAALKPELG 111
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLS 215
+ + + + V L L
Sbjct: 112 ----EVHLELQKDAPFTGSGDGYRLALSQADGIELFAV----------LELDDALRKKLQ 157
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNI-DTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ + + R ++ L+D++ L+ G V+ +
Sbjct: 158 PDPAAVSADNHSVQSTNLDLLLDVELDVTLRFGQREMLLQDILELQSGSVVELDREIQDP 217
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303
L +G+ I + V NY +R+ +
Sbjct: 218 VELLLDGRVIARGSVVVVDGNYGLRVAEV 246
>gi|256158145|ref|ZP_05456061.1| Flagellar motor switch FliN protein [Brucella ceti M490/95/1]
gi|256252904|ref|ZP_05458440.1| Flagellar motor switch FliN protein [Brucella ceti B1/94]
gi|261219992|ref|ZP_05934273.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
gi|265996663|ref|ZP_06109220.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
gi|260918576|gb|EEX85229.1| flagellar motor switch protein FliN [Brucella ceti B1/94]
gi|262550960|gb|EEZ07121.1| flagellar motor switch protein FliN [Brucella ceti M490/95/1]
Length = 98
Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
++ + + P + V++ + + ++ L G VI +
Sbjct: 5 ARKSHAARKKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPV 64
Query: 276 ILSANGKEIYSCELGRVGK---NYTIRITDRINF 306
+ NG+ I E+ + + + +T+ I
Sbjct: 65 DIVVNGRVIARGEVIVLEDDSSRFGVSLTEIIGK 98
>gi|157738168|ref|YP_001490852.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
gi|315636311|ref|ZP_07891561.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
gi|157700022|gb|ABV68182.1| flagellar motor switch protein FliN [Arcobacter butzleri RM4018]
gi|315479400|gb|EFU70083.1| flagellar switch protein FliN [Arcobacter butzleri JV22]
Length = 95
Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 30/80 (37%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ + +D + ++ + + L G +I + + N + I +
Sbjct: 4 SERVYDLLVDTEIVVDVMLGSTNISVGEFLKLTEGDIISLHKPAGSGGEIYVNSRIIGTG 63
Query: 288 ELGRVGKNYTIRITDRINFD 307
++ + + +R+ D ++ D
Sbjct: 64 DIIVIDEKLAVRVQDAMDSD 83
>gi|109947927|ref|YP_665155.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
gi|109715148|emb|CAK00156.1| flagellar motor switch protein [Helicobacter acinonychis str.
Sheeba]
Length = 123
Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + + + L ++ + G VI NG+ I E+
Sbjct: 39 KNLLDMEIIFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVF 98
Query: 293 GKNYTIRITDRINFD 307
+N IR+ + ++ +
Sbjct: 99 ERNLAIRLNEILDSN 113
>gi|1399288|gb|AAB03253.1| FliM [Treponema phagedenis]
Length = 110
Score = 62.3 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 6/63 (9%), Positives = 17/63 (26%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K + S + + + ++ V + S + I S + +
Sbjct: 48 SKEQMRTLSLMHETFARLTTTSLSAQLRSMVHVHVASVDQLTYEEFIRSIPTPTTIAVIN 107
Query: 88 LSS 90
+
Sbjct: 108 MDP 110
>gi|331005447|ref|ZP_08328826.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
gi|330420723|gb|EGG95010.1| flagellar motor switch FliN [gamma proteobacterium IMCC1989]
Length = 104
Score = 62.3 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 29/69 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + + + + + ++T+K G V+ + + NGK + + V
Sbjct: 34 LKDLKIKMQVSLGETEIQVDKLMTMKEGSVVKLDREANSPLDIFINGKLVARGVMVVVDD 93
Query: 295 NYTIRITDR 303
++ ++IT+
Sbjct: 94 DFGVQITEI 102
>gi|154253216|ref|YP_001414040.1| surface presentation of antigens (SPOA) protein [Parvibaculum
lavamentivorans DS-1]
gi|154157166|gb|ABS64383.1| surface presentation of antigens (SPOA) protein [Parvibaculum
lavamentivorans DS-1]
Length = 78
Score = 62.3 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 26/77 (33%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ V + + + ++ + G VI R+ + AN I E+
Sbjct: 1 MNSVNNVFVELSVVLGKSTMPIHQLLKMGRGAVIELGTRQDEEIWVLANNVPIARGEIIV 60
Query: 292 VGKNYTIRITDRINFDQ 308
G+ + IT + +
Sbjct: 61 QGERVAVSITTVLAGGE 77
>gi|260767961|ref|ZP_05876895.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260615991|gb|EEX41176.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315179665|gb|ADT86579.1| Flagellar motor switch/type III secretory pathway protein [Vibrio
furnissii NCTC 11218]
Length = 122
Score = 62.3 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ V + + K L +++ G VI + NG + E+ V
Sbjct: 45 RNIPVTVTLEVASKAIALGELMKAGEGSVIELDKLNGEPLDVKVNGALLGHAEVVVVNDK 104
Query: 296 YTIRITDRINF 306
Y +R+ D ++
Sbjct: 105 YGLRLIDVLDS 115
>gi|86356303|ref|YP_468195.1| flagellar motor switch protein [Rhizobium etli CFN 42]
gi|86280405|gb|ABC89468.1| flagellar motor switch protein [Rhizobium etli CFN 42]
Length = 214
Score = 62.3 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 135 ELIMDIPIDVQIMLGTSRMQVSSLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 194
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 195 DNDDTRFGVKLIEVLSTKK 213
>gi|22127343|ref|NP_670766.1| flagellar switch protein [Yersinia pestis KIM 10]
gi|45442781|ref|NP_994320.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
91001]
gi|51597652|ref|YP_071843.1| flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
gi|108809074|ref|YP_652990.1| flagellar switch protein [Yersinia pestis Antiqua]
gi|108810733|ref|YP_646500.1| flagellar switch protein [Yersinia pestis Nepal516]
gi|145597802|ref|YP_001161878.1| flagellar switch protein [Yersinia pestis Pestoides F]
gi|150260264|ref|ZP_01916992.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165925127|ref|ZP_02220959.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939068|ref|ZP_02227620.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008730|ref|ZP_02229628.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212179|ref|ZP_02238214.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399118|ref|ZP_02304642.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419195|ref|ZP_02310948.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425214|ref|ZP_02316967.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466356|ref|ZP_02331060.1| flagellar switch protein [Yersinia pestis FV-1]
gi|170022956|ref|YP_001719461.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186896786|ref|YP_001873898.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|218927897|ref|YP_002345772.1| flagellar switch protein [Yersinia pestis CO92]
gi|229837393|ref|ZP_04457556.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
gi|229840606|ref|ZP_04460765.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842843|ref|ZP_04462995.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900930|ref|ZP_04516054.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
gi|270487689|ref|ZP_06204763.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|294502774|ref|YP_003566836.1| flagellar switch protein [Yersinia pestis Z176003]
gi|21960426|gb|AAM87017.1|AE013950_2 hypothetical [Yersinia pestis KIM 10]
gi|45437647|gb|AAS63197.1| flagellar switch protein [Yersinia pestis biovar Microtus str.
91001]
gi|51590934|emb|CAH22590.1| Flagellar switch protein [Yersinia pseudotuberculosis IP 32953]
gi|108774381|gb|ABG16900.1| flagellar switch protein [Yersinia pestis Nepal516]
gi|108780987|gb|ABG15045.1| flagellar switch protein [Yersinia pestis Antiqua]
gi|115346508|emb|CAL19384.1| flagellar switch protein [Yersinia pestis CO92]
gi|145209498|gb|ABP38905.1| flagellar switch protein [Yersinia pestis Pestoides F]
gi|149289672|gb|EDM39749.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165913024|gb|EDR31649.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923327|gb|EDR40478.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992069|gb|EDR44370.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206925|gb|EDR51405.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166963189|gb|EDR59210.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051622|gb|EDR63030.1| flagellar motor switch protein FliN [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167055977|gb|EDR65758.1| flagellar motor switch protein FliN [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749490|gb|ACA67008.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
YPIII]
gi|186699812|gb|ACC90441.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis
PB1/+]
gi|229682269|gb|EEO78361.1| Flagellar motor switch protein fliN [Yersinia pestis Nepal516]
gi|229690110|gb|EEO82167.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696972|gb|EEO87019.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705516|gb|EEO91526.1| Flagellar motor switch protein fliN [Yersinia pestis Pestoides A]
gi|262360806|gb|ACY57527.1| flagellar switch protein [Yersinia pestis D106004]
gi|262364751|gb|ACY61308.1| flagellar switch protein [Yersinia pestis D182038]
gi|270336193|gb|EFA46970.1| flagellar motor switch protein FliN [Yersinia pestis KIM D27]
gi|294353233|gb|ADE63574.1| flagellar switch protein [Yersinia pestis Z176003]
gi|320016726|gb|ADW00298.1| Flagellar motor switch protein fliN [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 137
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 28/85 (32%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+ D ++ V + + + L +++T+ VI +
Sbjct: 43 EKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIR 102
Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
NG E+ + + Y +RI +
Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127
>gi|326403666|ref|YP_004283748.1| flagellar motor switch protein FliN [Acidiphilium multivorum
AIU301]
gi|325050528|dbj|BAJ80866.1| flagellar motor switch protein FliN [Acidiphilium multivorum
AIU301]
Length = 106
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
L +S + D Y + V + + + ++ L G V+
Sbjct: 4 LPLAPVSRRTAGDGPETQRPSRDL--EAVYDVPVLVSAVLGRSTMQVSQLLKLGRGAVVE 61
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGK-NYTIRITDRINFDQK 309
+ + N + I E+ + + I +T+ + D+
Sbjct: 62 LDRKAGDPIDIFVNNRLIARGEVVMLDETKLGITMTEIVKSDRN 105
>gi|327478783|gb|AEA82093.1| flagellar motor switch protein FliN [Pseudomonas stutzeri DSM 4166]
Length = 123
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
++ VN+ + + +LK+++ VI + NG E+ + NY
Sbjct: 47 KIPVNVTLEVASAEISLKELMECDTSSVIVLDKLAGEPLDVKVNGTLFAKAEVVVMNGNY 106
Query: 297 TIRITD 302
+RI +
Sbjct: 107 GLRIVE 112
>gi|296124273|ref|YP_003632051.1| surface presentation of antigens (SPOA) protein [Planctomyces
limnophilus DSM 3776]
gi|296016613|gb|ADG69852.1| surface presentation of antigens (SPOA) protein [Planctomyces
limnophilus DSM 3776]
Length = 396
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
Query: 155 ESSPNLEDFYDIDY-LKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLIS 213
E + +L + ++ ++++ S++ + Q+ + ++
Sbjct: 238 EWEEASANLETERRQNSSAERQLPDSQTAVAPVDSPVDDLLSNYEGLAAQDPMESAAPLA 297
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ + ++ + V + R+ K+ L ++ L G ++ F +
Sbjct: 298 QETMPQQSVT----SQLMLQRLSGVRVQLSVRLAEKRMPLAALLQLSPGALVTFSKPCED 353
Query: 274 CAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ ++ E ++G+++ +++ +
Sbjct: 354 LLDIYIGNRQYAQGEAVKIGEHFGVKVNRLGPPPE 388
>gi|170743412|ref|YP_001772067.1| surface presentation of antigens (SPOA) protein [Methylobacterium
sp. 4-46]
gi|168197686|gb|ACA19633.1| surface presentation of antigens (SPOA) protein [Methylobacterium
sp. 4-46]
Length = 101
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+L V++ + + + ++ + G VI + + AN I ++ G
Sbjct: 4 LEELKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDSDMVDILANDHPIARGQIVVTGN 63
Query: 295 NYTIRITDRINFDQ 308
++ +T+ I
Sbjct: 64 RISVEVTELIRKAD 77
>gi|296534812|ref|ZP_06897160.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
gi|296264860|gb|EFH11137.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
Length = 110
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
Y + V + + + ++ L G V+ + + N + + E+ V
Sbjct: 32 NAVYDIPVQVSAVLGRATMQVSQLLKLGRGAVVELDRKLGEAVDIYVNNRLVARGEVVMV 91
Query: 293 GKNY-TIRITDRINFDQ 308
G+N + +T+ + D+
Sbjct: 92 GENRLGVTMTEIVKTDR 108
>gi|153949693|ref|YP_001399619.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
gi|152961188|gb|ABS48649.1| flagellar motor switch protein FliN [Yersinia pseudotuberculosis IP
31758]
Length = 137
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 28/85 (32%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+ D ++ V + + + L +++T+ VI +
Sbjct: 43 EKTATKTDEQKRKMSLFSRIPVTLTLEVASVELPLSELLTVNNDSVIELDKLAGEPLDIR 102
Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
NG E+ + + Y +RI +
Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127
>gi|260768788|ref|ZP_05877722.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|260616818|gb|EEX42003.1| flagellar motor switch protein FliN [Vibrio furnissii CIP 102972]
gi|315180491|gb|ADT87405.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 128
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 31/73 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + ++ ++ LK++++++ VI +E + NG + +
Sbjct: 53 IRDIPVEVTVEVSRRRLPLKEIMSIEPASVIMLDKQEGEPVDIKINGVLFGTGNIIIQDG 112
Query: 295 NYTIRITDRINFD 307
Y +++ +N +
Sbjct: 113 KYGVQVLALVNNE 125
>gi|197121157|ref|YP_002133108.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. K]
gi|196171006|gb|ACG71979.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter sp. K]
Length = 324
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/268 (10%), Positives = 66/268 (24%), Gaps = 46/268 (17%)
Query: 75 HSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS------- 126
++ V L + + LV+ +++ + G P
Sbjct: 54 RAWPRPAVARIALDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAASLTPVEATALE 113
Query: 127 ------------LSTVEKKLAKRTIAQISAVLNQCISTTQESS----------------- 157
++ +E++L+ R A + E
Sbjct: 114 LLALAALDGACGVAELEERLSPRLAR---ADAEPAGALAVELEVTAGPARGRARLLLPPA 170
Query: 158 --PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI--- 212
L ++D + + +++ P ++
Sbjct: 171 AVRALRGPAELDRQLPVPGSVRRGRAALTAAELDALE-PGDVLVVDPPADGRDALVLPGG 229
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ A + QL V ++ + L +V L+ G V+ +
Sbjct: 230 LRALGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRR 289
Query: 273 TCAILSANGKEIYSCELGRVGKNYTIRI 300
L + + EL V +RI
Sbjct: 290 GLVTLRLGERAVARGELVDVEGAVGVRI 317
>gi|146309434|ref|YP_001189899.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
gi|145577635|gb|ABP87167.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
Length = 321
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 17/195 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIST 152
L+ LE G + + +ST E+++ R +S + + I
Sbjct: 124 GKVGFAIDRALLTEALECYYGGTCLPNHEAP--PVSTSEQRMRTRLGLDVSQLFARSILA 181
Query: 153 TQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLI 212
Q + E+V + I +S + + + + + T
Sbjct: 182 GQTFGKLEPYDNAYEEATW-------EYVAEFHFTSHITGSQASIFIYLDTQLVDELTNR 234
Query: 213 SLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+++ + + QL V +D + + L V+ L+ G ++P
Sbjct: 235 LTPPAPVAQSGNSL------NQIRQLPVRLDCMVASLQMPLAQVLALRPGDILPMRLL-- 286
Query: 273 TCAILSANGKEIYSC 287
+ N ++++
Sbjct: 287 ERCDVQINQQKLFRG 301
>gi|325295419|ref|YP_004281933.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065867|gb|ADY73874.1| surface presentation of antigens (SPOA) protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 80
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++++I I K TL ++ LK G +I F + + + NG++ EL V
Sbjct: 9 EDFKDVSLSISLCIGKKFLTLNKILKLKEGDLIEFDKKLEDYLDVYLNGQKFGIGELVIV 68
Query: 293 GKNYTIRITDRI 304
Y++R+ D +
Sbjct: 69 NDKYSLRLVDLV 80
>gi|120597291|ref|YP_961865.1| hypothetical protein Sputw3181_0460 [Shewanella sp. W3-18-1]
gi|146294564|ref|YP_001184988.1| hypothetical protein Sputcn32_3479 [Shewanella putrefaciens CN-32]
gi|120557384|gb|ABM23311.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
gi|145566254|gb|ABP77189.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
Length = 293
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 60/211 (28%), Gaps = 19/211 (9%)
Query: 99 CSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP 158
+ L N G S T R S E +LA++ + + L T
Sbjct: 98 IDRCTLDQLASNYYG-SMSTPLNSPLRDPSQSEFRLARKLLLSVVDKLPNNTIDTSALEV 156
Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQN 218
L + + N + E+ + + + L L+ Q
Sbjct: 157 ELIKGQMELAVS-----------AVWSFNFSQESQTPPMLFCLT-----EHLLGHLAEQP 200
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
K S DL A L V I + + + L G ++P KT +
Sbjct: 201 KKSEVSADLPAKLAIWLKNLPVKIQVTLGQHNIPVHSLGQLNTGDILPINLYPKTLLSI- 259
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
++ + ++T + ++
Sbjct: 260 -GSTPLFHATVHSHEGLMVAKLTQDVYQYEE 289
>gi|220926099|ref|YP_002501401.1| surface presentation of antigens (SPOA) protein [Methylobacterium
nodulans ORS 2060]
gi|219950706|gb|ACL61098.1| surface presentation of antigens (SPOA) protein [Methylobacterium
nodulans ORS 2060]
Length = 101
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V++ + + + ++ + G VI + + AN I ++ G
Sbjct: 4 LEDLKVDLTVVLGRTRMPIHMLLRMGRGAVIELDATDTDMVEILANDHPIARGQIVVTGN 63
Query: 295 NYTIRITDRINFDQ 308
++ +T+ I +
Sbjct: 64 RISVEVTELIRKAE 77
>gi|163758005|ref|ZP_02165093.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
gi|162284294|gb|EDQ34577.1| flagellar motor switch protein FliN [Hoeflea phototrophica DFL-43]
Length = 241
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + + ++ L G I + + NGK I E+ +
Sbjct: 159 DLVMGIPVDVQIILGSSRMAVSSLMELSEGATIALDRKIGEPVEIMVNGKMIGRGEITVL 218
Query: 293 GK---NYTIRITDRINFDQ 308
+ +RI + I Q
Sbjct: 219 DSDDTKFAVRIIEVIGAPQ 237
>gi|260779321|ref|ZP_05888213.1| putative flagellar motor switch protein [Vibrio coralliilyticus
ATCC BAA-450]
gi|260605485|gb|EEX31780.1| putative flagellar motor switch protein [Vibrio coralliilyticus
ATCC BAA-450]
Length = 271
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/266 (12%), Positives = 85/266 (31%), Gaps = 44/266 (16%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVI 105
L K + +I+ S + S + + S FI + +I
Sbjct: 46 LQNWLKTH-HAEANINLVSLHTFTPSEM-----DKSFISTFRHDG-GGRVFIHTDSQTLI 98
Query: 106 TLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQCISTTQESSPNLEDF 163
L ++ + + + SL+ + +L ++ I L + S E P
Sbjct: 99 KLADSFY----DAKMERSHTSLNNSDLRLQEKIGRLIINWLAPEEMWSD-CEFEP----- 148
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
+ +++ + + + + L L++ ++
Sbjct: 149 -------------AQGTGLYATIDVNLNDHQGTIHV------KLDELLVATLTEQLDLQP 189
Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
E + +PF + V ++ ++ K L ++++L+ V+P + +
Sbjct: 190 KESMYEPFCQSLASTPVKLNVLLSKKTMPLSELISLQPNDVLPIELLSSAPVSI--GQEH 247
Query: 284 IYSCELGRVGKNYTIRITDRINFDQK 309
++S + + +N D++
Sbjct: 248 LFSGRVAENDGQLVL----ILNQDKE 269
>gi|294678996|ref|YP_003579611.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
1003]
gi|294477816|gb|ADE87204.1| flagellar motor switch protein FliN [Rhodobacter capsulatus SB
1003]
Length = 90
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291
Q+ + I + + ++D++ +K ++P R + L K I EL G
Sbjct: 12 SQVPIEITISVGKARPLVRDLLRMKRDSILPLDRRVEDPVELYVGDKLIARGELTEMEGD 71
Query: 292 VGKNYTIRITDRIN 305
+R+T+ ++
Sbjct: 72 SNGQLAVRLTEVVD 85
>gi|170698146|ref|ZP_02889225.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
gi|170136911|gb|EDT05160.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
Length = 309
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 3/125 (2%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQL 238
+ V ++ + L T + + + ++D A + L
Sbjct: 182 DAVLIETISPEM--RVGEQQLCE-ISIEGNTMTMHEQASEMRGDSQPGMMDGQAFQVDAL 238
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V ++ ++ T+ DV L G V+P + + ANG+ + EL +VG+ +
Sbjct: 239 PVKLEFAFRQRELTVADVARLHPGAVLPLDAGAEHEVKIYANGRYLALGELIQVGERLAV 298
Query: 299 RITDR 303
I
Sbjct: 299 EIQSI 303
>gi|220915858|ref|YP_002491162.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219953712|gb|ACL64096.1| type III secretion system apparatus protein YscQ/HrcQ
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 324
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 69/265 (26%), Gaps = 40/265 (15%)
Query: 75 HSFKENFVFSQ-ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRS------- 126
++ V L + + LV+ +++ + G P
Sbjct: 54 RAWPRPAVARIALDLPALPGTAILEVEPALVVRVVDRMAGGDGAPAPAASLTPVEVTALE 113
Query: 127 ------------LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174
++ +E++L+ R + ++ E + L
Sbjct: 114 LLALAALDGACGVAELEERLSPRLARADAEP-AGALAVELEVTAGPARGRARLLLPPAAV 172
Query: 175 RL---SNEFVTTINM--NMTIENV-----------ASSFVLIIPQETLLKTTLI---SLS 215
R E + M ++ +++ P ++ +
Sbjct: 173 RALRGPAELDRQLPMPGSVRRGRAALTAAELDALEPGDVLVVDPPADGRDALVLPGGLRA 232
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
A + QL V ++ + L +V L+ G V+ +
Sbjct: 233 LGRIDGEGFHVEETEMAERHAQLPVTLEVELARVDVPLAEVARLEPGSVLALNLDRRGLV 292
Query: 276 ILSANGKEIYSCELGRVGKNYTIRI 300
L + I EL V +RI
Sbjct: 293 TLRLGERAIARGELVDVEGAVGVRI 317
>gi|237800782|ref|ZP_04589243.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023640|gb|EGI03697.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 353
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
L + + ++ + TL + + G ++P L NG+ + EL
Sbjct: 278 LDTSLDDLPLTLVCQLGSVELTLAQLREMAPGSLLPLAGLAHDEVDLMVNGRRVGRGELV 337
Query: 291 RVGKNYTIRI 300
+G +R+
Sbjct: 338 TIGDGLGVRL 347
>gi|162419818|ref|YP_001604860.1| flagellar switch protein [Yersinia pestis Angola]
gi|162352633|gb|ABX86581.1| flagellar motor switch protein FliN [Yersinia pestis Angola]
Length = 137
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 28/85 (32%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
+ D ++ V + + + L +++T+ VI +
Sbjct: 43 EKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIQ 102
Query: 279 ANGKEIYSCELGRVGKNYTIRITDR 303
NG E+ + + Y +RI +
Sbjct: 103 VNGIMFGQAEVVVINEKYGLRIINI 127
>gi|149177723|ref|ZP_01856323.1| probable flagellar motor switch protein fliN [Planctomyces maris
DSM 8797]
gi|148843373|gb|EDL57736.1| probable flagellar motor switch protein fliN [Planctomyces maris
DSM 8797]
Length = 295
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 85/287 (29%), Gaps = 43/287 (14%)
Query: 45 FLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLV 104
L F + D + + +F+ + + + + I S L
Sbjct: 22 ALADSFNQCFDYQYRLEMGESGVWSPEELEEAFQGPGLVTLVRIGGEAMVGLIPASLPL- 80
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
+ + + S ++ + ++ I L E D
Sbjct: 81 -----------PDWYSEPGDSQTSRLQTLALEWSMNLIPMDL----GDVDEFKTYFVDSL 125
Query: 165 DIDYLKKNTNRLSNEFVTTINMNMTIENVASS-------FVLIIPQE---TLLKTTLISL 214
+ T +E+ + +++ S +I P +
Sbjct: 126 LSE----VTACAPSEWAALMRIHLFSSEEESDGQSPSAVIPVIWPLTKPPVTESVEPEAD 181
Query: 215 SSQNKSENQSEDLIDPFAR------------KTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ S + + + + +L V ++ KK + ++++ G
Sbjct: 182 PAPQPSPSSTPQATPQMVQATPANSNRNPLNRISKLPVQAIVKLASKKIEMNQLLSICPG 241
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
+I F + L N + E ++G+++ ++I DR+ F ++
Sbjct: 242 SLITFDKPCEDPLELYINNQVYCLGEAVKIGEHFGLKI-DRVGFKEE 287
>gi|283834474|ref|ZP_06354215.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220]
gi|291070021|gb|EFE08130.1| flagellar motor switch protein [Citrobacter youngae ATCC 29220]
Length = 287
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 61/208 (29%), Gaps = 14/208 (6%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ L++ LL N G + + L + E +L R IS ++
Sbjct: 76 GHLAFDIDRALLLMLLGNFYGLTSSLADEKSQDDLPTKTETRLRSRLALDISNIIFN--K 133
Query: 152 TTQESSPNLEDFYDIDYLK---KNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
L+ + T L +E + + + + LI +
Sbjct: 134 NISGIPLTLKPDSSTVQTHWAYQLTFVLGDEENCSFRILLDDSHTDYILNLI------RR 187
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ Q + + L + ++ +I + D+ T+K G ++P
Sbjct: 188 SEHGEKKKQIDKASAEARKKTLIKEIIHTLPLTMNVKIAEIPLNVADLTTIKPGDILPIA 247
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
+ + E+++ +
Sbjct: 248 MPDTFP--VYIGKSELFNALIVEDKDKL 273
>gi|115379115|ref|ZP_01466239.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
gi|115363898|gb|EAU63009.1| type III secretion apparatus protein, YscQ/HrcQ family [Stigmatella
aurantiaca DW4/3-1]
Length = 342
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/262 (11%), Positives = 72/262 (27%), Gaps = 30/262 (11%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW 91
++ S+ + L + + + + VF LS+
Sbjct: 3 QQALQSICESLGRELGCDVSAASHVAEAVVVPA----------KGLSLSAVFVFLELSAT 52
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ + ++ LE L G P L+ +E+ +
Sbjct: 53 GGSAVLELEPPVLFAALERLAGGPARPGPMT---RLTRLEEASLAYLVLAALMAFRTQGE 109
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
+ P L ++ + + + + +++ + L++P L T
Sbjct: 110 LQRWWGPRLAGM-TVNRMDALARLDGRKAHLGVELVLSVGQRTAGARLVLPAVVLESTCR 168
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
++ S + ++ + ++ ++ TL +G V+ F
Sbjct: 169 KLPVQRDSSRAP----------EILAASLGARCFLGCRQLLPSELETLAVGDVVVF---- 214
Query: 272 KTCAILSANGKEIYSCELGRVG 293
L+ G L G
Sbjct: 215 -EGVRLT-GGAPRGPGRLVTRG 234
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 25/67 (37%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V ++ + L ++ TL+ GQ++P +L + + EL +
Sbjct: 276 PVEVEIELTRLLLPLSELATLRPGQLLPLRINVSEPVVLRVGDRGVARAELVDIDGEIGA 335
Query: 299 RITDRIN 305
RI +
Sbjct: 336 RILSLLP 342
>gi|296274024|ref|YP_003656655.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
gi|296098198|gb|ADG94148.1| surface presentation of antigens (SPOA) protein [Arcobacter
nitrofigilis DSM 7299]
Length = 95
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +D + T+KD + L G ++ + N + I + ++ +
Sbjct: 9 DLLVDTQITVDVMLGSANITIKDFLDLGEGDILSLDKAAGAGGDIYVNSRIIGTGDIIVI 68
Query: 293 GKNYTIRITDRINFD 307
+ +R+ D ++ D
Sbjct: 69 DEKLAVRVQDAMDSD 83
>gi|89068715|ref|ZP_01156101.1| Flagellar motor switch protein FliN [Oceanicola granulosus
HTCC2516]
gi|89045678|gb|EAR51740.1| Flagellar motor switch protein FliN [Oceanicola granulosus
HTCC2516]
Length = 132
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
++P+ + + + + N + + ++ + + + ++ L
Sbjct: 23 LLPELEAPEEQTVLENMVGEQVNGDGGRS---IEAMLNVGLEVNIVLGRSRMPISQLLKL 79
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY-TIRITDRIN 305
G +I R + + + + +L RVG N + +T+ +
Sbjct: 80 SRGSIIELDKRIGEPVDMIVSDRLVARGDLVRVGDNRVGVTLTEIVK 126
>gi|323143898|ref|ZP_08078560.1| putative type III secretion apparatus protein, YscQ/HrcQ family
[Succinatimonas hippei YIT 12066]
gi|322416325|gb|EFY06997.1| putative type III secretion apparatus protein, YscQ/HrcQ family
[Succinatimonas hippei YIT 12066]
Length = 315
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ S Q + + + I+ + K L + L G V+ +
Sbjct: 225 LLSSLQKTDSGDDMADSEELTT-IEDVELTINFSLESIKLPLSSIKELTEGSVLDLNNSA 283
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ GK I + VG ++IT
Sbjct: 284 LENIAVKLEGKTIGYGRIIEVGGKNALQITRI 315
>gi|226326426|ref|ZP_03801944.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
gi|225205209|gb|EEG87563.1| hypothetical protein PROPEN_00274 [Proteus penneri ATCC 35198]
Length = 313
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + + K ++ + L G I I+ NG + S EL ++
Sbjct: 238 QSINSIPVTVSFLLASKTLLIEQIEALAPGDKIELPENAYQHIIIKVNGISVASGELVKI 297
Query: 293 GKNYTIRITDRINFDQ 308
G N+ + I + +
Sbjct: 298 GDNFAVEIQRSFSAQE 313
>gi|331005464|ref|ZP_08328843.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
gi|330420740|gb|EGG95027.1| hypothetical protein IMCC1989_1978 [gamma proteobacterium IMCC1989]
Length = 255
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 16/185 (8%)
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
++ + T KL R + + L + ++ + ++SN
Sbjct: 86 SKIAPKIEPTYNSKLFNRLVEECLKSLQ-----VNLINDFFDENNTSKNPQNLEKQVSNL 140
Query: 180 FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLN 239
+ T+ N L I + L S + + +
Sbjct: 141 TIVTLKNN--------EISLKIFFSSFL--IDHIASEYIQKNKAKKGNLYSIKNSLANEK 190
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTI 298
++ T+ +++++K G VI + +G++++ LG N+ I
Sbjct: 191 ISFSVEYGNASLTVDEIMSIKTGDVIRLTKKIGDSVSAHNLSGEKLFDGSLGVNDNNFAI 250
Query: 299 RITDR 303
++T +
Sbjct: 251 KVTGK 255
>gi|307946346|ref|ZP_07661681.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
gi|307770010|gb|EFO29236.1| flagellar motor switch protein FliN [Roseibium sp. TrichSKD4]
Length = 88
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 30/79 (37%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ V+I + + + ++ + G VI E + AN + + ++
Sbjct: 1 MTTLDDIFVDISVVLGKSEMPIHQLLRMGRGAVIDLDVSEDDDVEIYANKTLVATGQVVL 60
Query: 292 VGKNYTIRITDRINFDQKS 310
+G+ I +T+ + +
Sbjct: 61 LGERIGISVTEVLRRGPEI 79
>gi|190890354|ref|YP_001976896.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
gi|190695633|gb|ACE89718.1| flagellar motor switch protein [Rhizobium etli CIAT 652]
Length = 195
Score = 60.8 bits (146), Expect = 3e-07, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194
>gi|315126004|ref|YP_004068007.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
gi|315014518|gb|ADT67856.1| flagellar motor switch protein FliN [Pseudoalteromonas sp. SM9913]
Length = 110
Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + + + TL ++ K G V+ + NG E+ V
Sbjct: 37 QDVPLLVTLEVASTEITLGELSQAKEGDVLKLDKVAGEALDVKVNGVFFAKAEVVMVEGQ 96
Query: 296 YTIR 299
Y ++
Sbjct: 97 YGLK 100
>gi|83944188|ref|ZP_00956644.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
EE-36]
gi|83845055|gb|EAP82936.1| surface presentation of antigens (SPOA) protein [Sulfitobacter sp.
EE-36]
Length = 114
Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + +++ + + + +++ L G VI R + N + + +L RV
Sbjct: 35 DAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRV 94
Query: 293 -GKNYTIRITDRINFDQKSLKNF 314
G + + + + + + + +
Sbjct: 95 QGDSLGVALREIV---KDFVSDI 114
>gi|254418697|ref|ZP_05032421.1| Surface presentation of antigens protein, putative [Brevundimonas
sp. BAL3]
gi|196184874|gb|EDX79850.1| Surface presentation of antigens protein, putative [Brevundimonas
sp. BAL3]
Length = 83
Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 24/71 (33%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++V I + + ++ + G VIP E + AN + E+
Sbjct: 1 MSQINAVDVEISVVLGRMVLPMSQLLRMGRGAVIPLDASEGDEVWILANNHPVARGEIEI 60
Query: 292 VGKNYTIRITD 302
I +T
Sbjct: 61 RDDRIAITVTR 71
>gi|218508216|ref|ZP_03506094.1| flagellar motor switch protein [Rhizobium etli Brasil 5]
Length = 195
Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194
>gi|54124953|gb|AAV30221.1| AscQ [Aeromonas hydrophila]
Length = 308
Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 21/239 (8%)
Query: 88 LSSWSSNFFIGCSNNLVITLLENL---LGAS--HETIPQLYNRSLSTVEKKLAKRTIAQI 142
+ +L + L+E L LG + +L +
Sbjct: 72 APDLQQAALLSLPESLRLALIERLGQPLGGLTCSALAAHAIGEETAEPALQLLLKREGAT 131
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-MTIENV-------- 193
A+ P + + + V ++ + +V
Sbjct: 132 LALWLAEPGPLLGKLPPRPIQQRLPLPLALSLQWGAMRVAIADLETLACGDVLLPPPSPL 191
Query: 194 -ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
++ + P + + + L + L V + + +
Sbjct: 192 LGQQLLVCVEGRPFAYCQPHPQHLELTAMHNAAPDDALDPS---QLEGLPVQVTFEVGRQ 248
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ TL+ G +I + +NG + + L + +R+ + Q
Sbjct: 249 TLDWHTLTTLQPGSLIDLGAPIDGEVRIISNGHLLGNGRLVEIQGRLGVRVESLKSESQ 307
>gi|296447444|ref|ZP_06889369.1| flagellar motor switch protein FliN [Methylosinus trichosporium
OB3b]
gi|296255064|gb|EFH02166.1| flagellar motor switch protein FliN [Methylosinus trichosporium
OB3b]
Length = 123
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
L+S+ D ++ V + + + +++ L G ++P
Sbjct: 17 PRIDAGLASEEPRAGMDVDSRKL--ESILRIPVVMQVIVGSVTMPVSNLMKLGRGAIVPL 74
Query: 268 LHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINF 306
+ + NG+ I E+ V + + +T+ I
Sbjct: 75 DQKIGEPVDVVVNGRLIARGEVVVVEDDNTRFGVSLTEIIEP 116
>gi|325107429|ref|YP_004268497.1| surface presentation of antigens (SPOA) protein [Planctomyces
brasiliensis DSM 5305]
gi|324967697|gb|ADY58475.1| surface presentation of antigens (SPOA) protein [Planctomyces
brasiliensis DSM 5305]
Length = 295
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
AR+ LNV + R+ K L ++ L G ++ F L N + E +
Sbjct: 211 ARRLMNLNVKVSVRLAEMKIELSTLINLCPGTLLVFPKSCDDLLDLYVNNRLYAQGEAVK 270
Query: 292 VGKNYTIRITDR 303
+G+ + +++ +
Sbjct: 271 IGEKFGLKVNEI 282
>gi|153949575|ref|YP_001399620.1| lateral flagellar export/assembly protein [Yersinia
pseudotuberculosis IP 31758]
gi|152961070|gb|ABS48531.1| lateral flagellar export/assembly protein [Yersinia
pseudotuberculosis IP 31758]
Length = 292
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/207 (13%), Positives = 67/207 (32%), Gaps = 17/207 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR--SLSTVEKKLAKRTIAQISAVLNQCI 150
N L++ +L + G S E + L+ E++L + +I+ +
Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKKTTTTEKLSPLTKTEERLKNKLGLEITDLF---- 140
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
+ + I + I+ + + + F + I + +
Sbjct: 141 -----LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYHKSG-FSIFIDAPHIDRFI 192
Query: 211 LISLSSQNKSENQSEDLI-DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ KS ++ L +L V + ++++ TL +++ LK G +I
Sbjct: 193 NTIKTKSEKSVEKNVSLSEKQLEHLVKKLPVTLTSQLSNINLTLAELMALKEGDIISASL 252
Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296
E + + ++S +
Sbjct: 253 PEYFP--VFIGKEALFSAAITENRGKL 277
>gi|83955111|ref|ZP_00963767.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
gi|83840440|gb|EAP79613.1| flagellar motor switch protein [Sulfitobacter sp. NAS-14.1]
Length = 114
Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + +++ + + + +++ L G VI R + N + + +L RV
Sbjct: 35 DAIFGVKLDVRVVLGRSRMPISELLNLTKGSVIELDRRVGEPVDIMINDRMVARGDLVRV 94
Query: 293 -GKNYTIRITDRINFDQKSLKNF 314
G + + + + + + +
Sbjct: 95 QGDSLGVALREIV---KDFVSEI 114
>gi|153011535|ref|YP_001372749.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
49188]
gi|151563423|gb|ABS16920.1| flagellar motor switch protein FliN [Ochrobactrum anthropi ATCC
49188]
Length = 115
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + +++ L G VI + + NG+ I E+ +
Sbjct: 39 ELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 99 EDDSSRFGVSLTEIIGK 115
>gi|10955563|ref|NP_052404.1| type III secretion system protein [Yersinia enterocolitica]
gi|28373030|ref|NP_783678.1| type III secretion system protein [Yersinia enterocolitica]
gi|32470291|ref|NP_863526.1| type III secretion system protein [Yersinia enterocolitica]
gi|122815815|ref|YP_001004081.1| type III secretion system protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332163585|ref|YP_004424927.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|14579349|gb|AAK69226.1|AF336309_21 YscQ [Yersinia enterocolitica]
gi|4324350|gb|AAD16827.1| YscQ [Yersinia enterocolitica W22703]
gi|23630602|gb|AAN37558.1| YscQ [Yersinia enterocolitica]
gi|121663689|emb|CAL10051.1| putative type III secretion protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|310923234|emb|CBW54700.1| YscQ, T3SS component [Yersinia enterocolitica (type O:8)]
gi|325667815|gb|ADZ44458.1| type III secretion system protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 307
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S E P QL V + + + + +L+ G +I
Sbjct: 215 FIGMSHESDELNPKPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
L ANG+ + L + +RI
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300
>gi|260466629|ref|ZP_05812817.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
WSM2075]
gi|259029635|gb|EEW30923.1| flagellar motor switch protein FliN [Mesorhizobium opportunistum
WSM2075]
Length = 128
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+ + + + + + + + V++ + + + D++ L+ G
Sbjct: 19 RAIEELRGVLHEEEQRPDAAFRAAAGANSSVIMNIPVDVQIILGSTEMAVSDLMALQKGS 78
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308
+ R + NG++I E+ + + IR+T+ I +
Sbjct: 79 TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126
>gi|168699680|ref|ZP_02731957.1| hypothetical protein GobsU_09164 [Gemmata obscuriglobus UQM 2246]
Length = 117
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 29/74 (39%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I R+ + +++TL G V+ L+ G E+ V
Sbjct: 37 ESLRDVPITITARLGRAVLPIGEILTLGPGSVVELEEVISAPVELTVRGVPFAVGEVVVV 96
Query: 293 GKNYTIRITDRINF 306
G+++ +RI + +
Sbjct: 97 GEHFAVRIKNLLPP 110
>gi|294496838|ref|YP_003560535.1| type III secretion protein [Yersinia pestis Z176003]
gi|262364006|gb|ACY64343.1| type III secretion protein [Yersinia pestis D182038]
gi|294352426|gb|ADE66483.1| type III secretion protein [Yersinia pestis Z176003]
Length = 305
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S E +P QL V + + + + +L+ G +I
Sbjct: 213 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 271
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
L ANG+ + L + +RI
Sbjct: 272 RLLANGRLLGHGRLVEIQGRLGVRIER 298
>gi|16082731|ref|NP_395177.1| type III secretion system protein [Yersinia pestis CO92]
gi|31795278|ref|NP_857739.1| type III secretion system protein [Yersinia pestis KIM]
gi|31795480|ref|NP_857934.1| type III secretion system protein [Yersinia pestis KIM]
gi|45478541|ref|NP_995368.1| type III secretion system protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51593912|ref|YP_068479.1| type III secretion system protein [Yersinia pseudotuberculosis IP
32953]
gi|108793661|ref|YP_636811.1| type III secretion system protein [Yersinia pestis Antiqua]
gi|145597139|ref|YP_001154603.1| type III secretion system protein [Yersinia pestis Pestoides F]
gi|149192696|ref|YP_001293928.1| type III secretion system protein [Yersinia pestis CA88-4125]
gi|162417770|ref|YP_001604475.1| type III secretion system protein [Yersinia pestis Angola]
gi|165927755|ref|ZP_02223587.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165940056|ref|ZP_02228590.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011716|ref|ZP_02232614.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214457|ref|ZP_02240492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401907|ref|ZP_02307393.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422402|ref|ZP_02314155.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422438|ref|ZP_02314191.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167422900|ref|ZP_02314653.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426869|ref|ZP_02318622.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186897577|ref|YP_001874688.1| type III secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|229896859|ref|ZP_04512019.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|229900214|ref|ZP_04515350.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|270491107|ref|ZP_06208179.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|322836569|ref|YP_004210065.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
gi|1176912|sp|P42713|YSCQ_YERPE RecName: Full=Yop proteins translocation protein Q
gi|55977795|sp|P40296|YSCQ_YERPS RecName: Full=Yop proteins translocation protein Q
gi|2465658|gb|AAB72200.1| YscQ [Yersinia pestis]
gi|2996238|gb|AAC62561.1| Yop proteins translocation protein Q [Yersinia pestis KIM 10]
gi|3822068|gb|AAC69788.1| type III secretion protein [Yersinia pestis KIM 10]
gi|5832463|emb|CAB54920.1| putative type III secretion protein [Yersinia pestis CO92]
gi|45357163|gb|AAS58559.1| putative type III secretion protein YscQ [Yersinia pestis biovar
Microtus str. 91001]
gi|51591609|emb|CAF25413.1| yscQ; putative type III secretion protein [Yersinia
pseudotuberculosis IP 32953]
gi|108782208|gb|ABG16263.1| type III secretion protein [Yersinia pestis Antiqua]
gi|145212907|gb|ABP42313.1| type III secretion protein [Yersinia pestis Pestoides F]
gi|148872354|gb|ABR14844.1| putative type III secretion protein [Yersinia pestis CA88-4125]
gi|162354790|gb|ABX88737.1| type III secretion apparatus protein YscQ [Yersinia pestis Angola]
gi|165911966|gb|EDR30609.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920191|gb|EDR37492.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989323|gb|EDR41624.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204350|gb|EDR48830.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958190|gb|EDR55211.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958639|gb|EDR55660.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|166958675|gb|EDR55696.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167048635|gb|EDR60043.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054168|gb|EDR63995.1| type III secretion apparatus protein YscQ [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|186700603|gb|ACC91231.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
pseudotuberculosis PB1/+]
gi|229686734|gb|EEO78814.1| putative type III secretion protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229700130|gb|EEO88169.1| putative type III secretion protein [Yersinia pestis Pestoides A]
gi|262363849|gb|ACY60569.1| type III secretion protein [Yersinia pestis D106004]
gi|270334850|gb|EFA45629.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|317374481|gb|ADV16656.1| type III secretion inner membrane protein [Yersinia pestis]
gi|321161343|gb|ADW67049.1| type III secretion apparatus protein YscQ [Yersinia pestis Java 9]
Length = 307
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S E +P QL V + + + + +L+ G +I
Sbjct: 215 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
L ANG+ + L + +RI
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300
>gi|318608198|emb|CBY78172.1| type III secretion inner membrane protein (YscQ,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 307
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S E P QL V + + + + +L+ G +I
Sbjct: 215 FIGMSHESDELNPKPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
L ANG+ + L + +RI
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300
>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum
bv. viciae 3841]
Length = 195
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 116 DLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194
>gi|284006889|emb|CBA72158.1| type III secretion component protein SctQ [Arsenophonus nasoniae]
Length = 325
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 221 ENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
++ + I + + L+ + L G +I + AN
Sbjct: 214 SETDNLANQSL-TNLEEIQIPIRFEVGRQYIELQALTHLSEGSLIDLAVPVNGDVRIIAN 272
Query: 281 GKEIYSCELGRVGKNYTIRITDRINFDQKSL 311
+ + + +L + I++ + + L
Sbjct: 273 QQPLGTGQLVEIQGRLGIKVVELFAKKTEPL 303
>gi|329889094|ref|ZP_08267437.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
gi|328844395|gb|EGF93959.1| flagellar motor switch protein fliN [Brevundimonas diminuta ATCC
11568]
Length = 83
Score = 60.0 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++V I + ++ ++ + G VIP EK + AN + E+
Sbjct: 1 MSQIEAVDVEISVVLGRSVLPMQQLLRMGRGAVIPLDASEKDEVWILANNHPVARGEIEI 60
Query: 292 VGKNYTIRITD 302
I +T
Sbjct: 61 RDDRIAITVTR 71
>gi|475122|gb|AAA27677.1| yscQ [Yersinia pseudotuberculosis]
Length = 307
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S E +P QL V + + + + +L+ G +I
Sbjct: 215 FIGMSHESDELNPEPLTD-LNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEV 273
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
L ANG+ + L + +RI
Sbjct: 274 RLLANGRLLGHGRLVEIQGRLGVRIER 300
>gi|83594500|ref|YP_428252.1| surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
gi|83577414|gb|ABC23965.1| Surface presentation of antigens (SPOA) protein [Rhodospirillum
rubrum ATCC 11170]
Length = 93
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 223 QSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
E +++ Y + V I + + ++ L G V+ + + AN
Sbjct: 2 ADEQDSKRISKQAVYTVPVEISVVLGKAVLRVNQLLKLGRGAVVELEQKISEPVEIYAND 61
Query: 282 KEIYSCEL-GRVGKNYTIRITDRINF 306
+ E+ G + +T+ +
Sbjct: 62 ILVARGEVIITDGDKIGVTLTELVRS 87
>gi|170022957|ref|YP_001719462.1| flagellar motor switch protein [Yersinia pseudotuberculosis YPIII]
gi|169749491|gb|ACA67009.1| flagellar motor switch protein [Yersinia pseudotuberculosis YPIII]
Length = 299
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
N L++ +L + G S E + L+ E++L + +I+
Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSPEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
+ + + I + I+ + N + F + I
Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + K+ ++ L + +L V + ++++ TL +++ LK G
Sbjct: 193 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 252
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+I E + + ++S +
Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284
>gi|209547919|ref|YP_002279836.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533675|gb|ACI53610.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 195
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 116 ELIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 175
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 176 DNDDTRFGVKLIEVLSTKK 194
>gi|163800130|ref|ZP_02194031.1| putative flagellar motor switch protein [Vibrio sp. AND4]
gi|159175573|gb|EDP60367.1| putative flagellar motor switch protein [Vibrio sp. AND4]
Length = 272
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/295 (11%), Positives = 85/295 (28%), Gaps = 53/295 (17%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMD--------LDVDISYTSCQSGKFSHIIHSFK 78
D + + K + +K + + + ++ + + +FS
Sbjct: 16 DAELLGKPIHIIREKLEKLISESCSSLTNELQNWLNTSKIEADLFAVELHRFS------- 68
Query: 79 ENFVFSQASLSSWS----SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + S++ +I + L + + + SL+ + +L
Sbjct: 69 -PTLLVKDQTSAYQHQDGGMVYIHTDTQALTKLADRFY----SAANERVSTSLTASDLRL 123
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
+R I+ Q+ + +++ E +
Sbjct: 124 QERISRIITN-----WLAPQDMW------------QTCEYEAPRGIGLHTEISIAFEGLQ 166
Query: 195 SSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLK 254
S L + + + + +L PF R V ++ ++ K L
Sbjct: 167 GSIHLKLDSTMIQTLIEQL------ALHNETNLYQPFCRSLESTPVRLNVVLSKKTMALS 220
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
DVV L+ ++P +S + ++S + + N D++
Sbjct: 221 DVVELQPDDILPIELL--NTVPVSIGNQTLFSGRVAEQDGQLVL----IFNPDKE 269
>gi|118591116|ref|ZP_01548515.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
gi|118436192|gb|EAV42834.1| hypothetical protein SIAM614_15857 [Stappia aggregata IAM 12614]
Length = 88
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 29/75 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ V+I + + + ++ + G VI E + AN + ++ +G+
Sbjct: 5 DEIKVDISVVLGENEMPVHQLLRMGRGAVIDLDVAEDEDVKIYANNTLVAKGQVVLLGER 64
Query: 296 YTIRITDRINFDQKS 310
I IT+ +
Sbjct: 65 IGISITEVLMRPPDI 79
>gi|207109202|ref|ZP_03243364.1| flagellar motor switch protein [Helicobacter pylori HPKX_438_CA4C1]
Length = 78
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 25/68 (36%)
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + + L ++ + G VI NG+ I E+ +N IR
Sbjct: 1 MFFSAELGSTQIPLLQILRFEKGSVIDLQKPAGESVDTFVNGRVIGKGEVMVFERNLAIR 60
Query: 300 ITDRINFD 307
+ + ++ +
Sbjct: 61 LNEILDSN 68
>gi|157147123|ref|YP_001454442.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895]
gi|157084328|gb|ABV14006.1| hypothetical protein CKO_02900 [Citrobacter koseri ATCC BAA-895]
Length = 294
Score = 60.0 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 23/211 (10%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL--STVEKKLAKRTIAQISAVL--NQ 148
N L++ +L + G S ++ + SL + E++L + +++ ++ +
Sbjct: 85 GNVAFVIDRILLLNILHDYYGLSKDSSHVAPDESLRVTKTEERLRSKLGQELTQLVICKE 144
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLK 208
+ + + + + I + SF +++ + +
Sbjct: 145 TFGENLDIKVDYS-------------TVISHWSWCITFTLE-GYDHGSFTILLDHHHVDQ 190
Query: 209 TTLISLSSQNKSENQSED---LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
I S + R L + + R+ T+ + +K G +I
Sbjct: 191 MLAILRSPDAADSRAVKSVPLNPAQIERLFDSLPLKLSGRLASLNLTVAQISDIKPGDII 250
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNY 296
P + ++I+ +
Sbjct: 251 PIA--INEPLPVFIGKEQIFEAAIVEDRSKL 279
>gi|13472566|ref|NP_104133.1| flagellar motor switch protein FliN [Mesorhizobium loti MAFF303099]
gi|14023312|dbj|BAB49919.1| flagellar motor switch protein; FliN [Mesorhizobium loti
MAFF303099]
Length = 128
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
+ + + + + + + + V++ + + + D++ L+ G
Sbjct: 19 RAIEELRGVLHEEEQRPDAAFRAAAGANSNVIMNIPVDVQIILGSTEMAVADLMALQKGS 78
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVG---KNYTIRITDRINFDQ 308
+ R + NG++I E+ + + IR+T+ I +
Sbjct: 79 TVALNRRIGEPVDVVVNGRKIARGEITVLESDPSRFGIRLTEIIAGTK 126
>gi|188583911|ref|YP_001927356.1| surface presentation of antigens (SPOA) protein [Methylobacterium
populi BJ001]
gi|179347409|gb|ACB82821.1| surface presentation of antigens (SPOA) protein [Methylobacterium
populi BJ001]
Length = 101
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+L V++ + L ++ + G VI E + AN I ++ G
Sbjct: 4 LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63
Query: 295 NYTIRITDRINFDQ 308
++ +T+ I +
Sbjct: 64 RISVEVTELIRKAE 77
>gi|241203097|ref|YP_002974193.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856987|gb|ACS54654.1| flagellar motor switch protein FliN [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 194
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 115 DLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 174
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 175 DNDDTRFGVKLIEVLSTKK 193
>gi|114706763|ref|ZP_01439663.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
gi|114537711|gb|EAU40835.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Fulvimarina pelagi HTCC2506]
Length = 131
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++V + + + ++ +++ L G ++ + + NG+ I E+ +
Sbjct: 43 DLVLDVSVTMQVVLGSARMSVSELLKLNRGSIVKLDTKVGDPIDVVVNGRVIARGEIVVL 102
Query: 293 ---GKNYTIRITDR 303
+ + + +T+
Sbjct: 103 DQDDQQFGVTLTEV 116
>gi|299135189|ref|ZP_07028380.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
gi|298590166|gb|EFI50370.1| surface presentation of antigens (SPOA) protein [Afipia sp. 1NLS2]
Length = 80
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 25/75 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++V++ + + + V+ L G +I E+ + AN + S +
Sbjct: 4 IDNVSVDLMVVLGTTRMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRN 63
Query: 295 NYTIRITDRINFDQK 309
+ + +
Sbjct: 64 RIAVEVKRMLPKTAD 78
>gi|299066544|emb|CBJ37734.1| putative flagellar motor switch protein [Ralstonia solanacearum
CMR15]
Length = 132
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 30/68 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + + T+ +++ K QV+ + L GK + +L V +
Sbjct: 58 LHRVKAQLTVCVGTATLTVGELMAAKAQQVLRLDSKVAQPVDLLLEGKVVARGQLVAVDE 117
Query: 295 NYTIRITD 302
++ +RIT+
Sbjct: 118 HFGVRITE 125
>gi|288550130|ref|ZP_05969371.2| flagellar motor switch protein [Enterobacter cancerogenus ATCC
35316]
gi|288316311|gb|EFC55249.1| flagellar motor switch protein [Enterobacter cancerogenus ATCC
35316]
Length = 293
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 33/264 (12%)
Query: 39 GYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIG 98
++ L F +K+ ++V + QS F+ I +N +
Sbjct: 42 FDIFDARLSIYFLKKLRVNV-----ALQSMTFA--IDQTYKNTQLFSTPF----GSMAFS 90
Query: 99 CSNNLVITLLENLLGASHETIPQLYN--RSLSTVEKKLAKRTIAQISAVL--NQCISTTQ 154
L++ +L + G E+ + + + ++ E +L + ++ +L +
Sbjct: 91 IERTLLLQILHDYYGLGKESRNKSLDVHQPVTKTEDRLKNKIGLDLTRLLIDKETFGQDV 150
Query: 155 ESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISL 214
E + + N++ + + SF L+ +
Sbjct: 151 EIKSD-------------NTTVINQWSWCVTFTLE-GYEQGSFTLLFDNAHVDHLLAKLR 196
Query: 215 SSQNKSENQSED--LIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
S + R Y L + + + T+ + +K G +IP E
Sbjct: 197 SPDADQATSRQAPPTPTQIERIFYGLPLKLHGHVTSLNLTVAQLARIKPGDIIPVNINEN 256
Query: 273 TCAILSANGKEIYSCELGRVGKNY 296
+ ++I+ ++
Sbjct: 257 IP--VYIGKEQIFDAKIAEDRGKL 278
>gi|167568051|ref|ZP_02360967.1| translocation protein in type III secretion [Burkholderia
oklahomensis EO147]
Length = 349
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+V + ++ L + +L+ G V+ + L GK L VG
Sbjct: 280 DAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGLVTLQVAGKPFARGTLLDVGGRL 339
Query: 297 TIRITDRIN 305
+RI +
Sbjct: 340 AVRIEHLLP 348
>gi|149191149|ref|ZP_01869407.1| flagellar basal-body rod protein B [Vibrio shilonii AK1]
gi|148834987|gb|EDL51966.1| flagellar basal-body rod protein B [Vibrio shilonii AK1]
Length = 255
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 25/233 (10%)
Query: 69 KFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLS 128
FS H +N + + ++ + + F LL L + + + RS S
Sbjct: 47 SFSEA-HKPPKNSIKTVLNIEDF-GHVFFFIEPQAADILLYKHL--NTPSPTRKSKRSSS 102
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
++ L I+ + + D+ ++ TTI +
Sbjct: 103 DTTLTQTHL---RLFQKLTMAITNILTADASHYAVEHTDH-------QPSDIGTTITFS- 151
Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
+ ++ + K + S++ + V + +
Sbjct: 152 -FDEQQIDITFMLDDRYVKKLRDVMESNETFD-------REEILNNLRYQPVELGCVMLH 203
Query: 249 KKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ TL ++ L+ G +P + + NG + +L + + I
Sbjct: 204 GQCTLHELSKLQPGDFMPMTLCKN--LTVKVNGHPTFFGKLQSINSELGVEID 254
>gi|254294399|ref|YP_003060422.1| hypothetical protein Hbal_2042 [Hirschia baltica ATCC 49814]
gi|254042930|gb|ACT59725.1| surface presentation of antigens (SPOA) protein [Hirschia baltica
ATCC 49814]
Length = 80
Score = 59.7 bits (143), Expect = 6e-07, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + I + K ++ ++ + G VIP E + AN I EL G+
Sbjct: 1 MDAVEIEITVLLGRSKIPMQQLLRMGRGAVIPLDASEYDEVWILANNHPIARGELVIDGE 60
Query: 295 NYTIRITDRINFDQ 308
++ +T +
Sbjct: 61 RVSVSVTGAAQVED 74
>gi|239834453|ref|ZP_04682781.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
3301]
gi|239822516|gb|EEQ94085.1| flagellar motor switch protein FliN [Ochrobactrum intermedium LMG
3301]
Length = 115
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + +++ L G VI + + NG+ I E+ +
Sbjct: 39 ELIMGIPVDVQVVLGGTTMPVANLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 99 EDDSSRFGVSLTEIIGK 115
>gi|163853607|ref|YP_001641650.1| surface presentation of antigens (SPOA) protein [Methylobacterium
extorquens PA1]
gi|218532467|ref|YP_002423283.1| surface presentation of antigens (SPOA) protein [Methylobacterium
chloromethanicum CM4]
gi|240141029|ref|YP_002965509.1| putative flagellar motor switch protein FliN [Methylobacterium
extorquens AM1]
gi|254563543|ref|YP_003070638.1| flagellar motor switch protein FliN [Methylobacterium extorquens
DM4]
gi|163665212|gb|ABY32579.1| surface presentation of antigens (SPOA) protein [Methylobacterium
extorquens PA1]
gi|218524770|gb|ACK85355.1| surface presentation of antigens (SPOA) protein [Methylobacterium
chloromethanicum CM4]
gi|240011006|gb|ACS42232.1| putative flagellar motor switch protein FliN [Methylobacterium
extorquens AM1]
gi|254270821|emb|CAX26826.1| putative flagellar motor switch protein FliN [Methylobacterium
extorquens DM4]
Length = 101
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+L V++ + L ++ + G VI E + AN I ++ G
Sbjct: 4 LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63
Query: 295 NYTIRITDRINFDQ 308
++ +T+ I +
Sbjct: 64 RISVEVTELIRKAE 77
>gi|152990379|ref|YP_001356101.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
SB155-2]
gi|151422240|dbj|BAF69744.1| flagellar motor switch protein FliN/FliY [Nitratiruptor sp.
SB155-2]
Length = 83
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 31/68 (45%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++ + R+ K + ++++LK G VI + + N K++ E+ +
Sbjct: 14 LEDISLKMSVRLGSTKKMIIEILSLKEGDVIELERNTEDYIDVMLNEKKMAIGEIVVIND 73
Query: 295 NYTIRITD 302
Y +RI D
Sbjct: 74 KYGVRIVD 81
>gi|167572946|ref|ZP_02365820.1| translocation protein in type III secretion [Burkholderia
oklahomensis C6786]
Length = 361
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 24/69 (34%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+V + ++ L + +L+ G V+ + L GK L VG
Sbjct: 292 DAHVRVVAQVATIDVPLARLASLRAGDVLDGPAQPDGFVTLQVAGKPFARGTLLDVGGRL 351
Query: 297 TIRITDRIN 305
+RI +
Sbjct: 352 AVRIEHLLP 360
>gi|313673294|ref|YP_004051405.1| surface presentation of antigens (spoa) protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940050|gb|ADR19242.1| surface presentation of antigens (SPOA) protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 94
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 31/76 (40%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ + + +++ + K T+ ++++ + G +I + N K +
Sbjct: 3 KEYVIKHFSDVIMDVTVELGRKLCTIGELLSWEQGTIIKLNKTSGEVVDMLVNNKPLAIG 62
Query: 288 ELGRVGKNYTIRITDR 303
E+ + + + R++D
Sbjct: 63 EIMVLDEKFAFRLSDI 78
>gi|254499104|ref|ZP_05111794.1| putative surface presentation of antigens (SPOA) protein
[Legionella drancourtii LLAP12]
gi|254351643|gb|EET10488.1| putative surface presentation of antigens (SPOA) protein
[Legionella drancourtii LLAP12]
Length = 101
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V RI T+ ++ LK GQ + + + N + I EL
Sbjct: 31 VGDIEVQCTVRIGTLNLTIAELKELKSGQELHLEQKTHEPVEIVLNERVIARGELMSHED 90
Query: 295 NYTIRITDRIN 305
++ ++IT+ +
Sbjct: 91 HFAVQITEIYS 101
>gi|254470456|ref|ZP_05083860.1| putative surface presentation of antigens protein [Pseudovibrio sp.
JE062]
gi|211960767|gb|EEA95963.1| putative surface presentation of antigens protein [Pseudovibrio sp.
JE062]
Length = 88
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 29/79 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++V+I + + + ++ + G VI E + AN + ++
Sbjct: 1 MNRFDDISVDISVVLGKSEMPVHQLLRMGRGAVIELDTHEADDVTILANNTPVAEGQVTV 60
Query: 292 VGKNYTIRITDRINFDQKS 310
VG I IT + +
Sbjct: 61 VGDKVGIVITKVLQRAVEM 79
>gi|289624376|ref|ZP_06457330.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646625|ref|ZP_06477968.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868640|gb|EGH03349.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 351
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T+ + ++N S ++ D +L + + ++ + TL + +
Sbjct: 248 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345
>gi|209884877|ref|YP_002288734.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
gi|209873073|gb|ACI92869.1| surface presentation of antigens [Oligotropha carboxidovorans OM5]
Length = 80
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 25/72 (34%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++V++ + K + V+ L G +I E+ + AN + S +
Sbjct: 4 LDNVSVDLMVVLGTTKMPIHQVMRLSRGAIIELDATEQDEVKVLANNLPVASGAVVVNRN 63
Query: 295 NYTIRITDRINF 306
+ + +
Sbjct: 64 RIAVEVKRMLPK 75
>gi|320328889|gb|EFW84888.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330879023|gb|EGH13172.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 351
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T+ + ++N S ++ D +L + + ++ + TL + +
Sbjct: 248 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345
>gi|23009135|ref|ZP_00050297.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Magnetospirillum magnetotacticum MS-1]
Length = 101
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+L V++ + L ++ + G VI E + AN I ++ G
Sbjct: 4 LDELQVDLKVVLGRSHMPLHMLLRMGRGAVIELEATETDMVEILANDHPIARGQIVVTGN 63
Query: 295 NYTIRITDRINFDQ 308
++ +T+ I +
Sbjct: 64 RISVEVTELIRKAE 77
>gi|218679322|ref|ZP_03527219.1| putative flagellar motor switch protein [Rhizobium etli CIAT 894]
Length = 178
Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats.
Identities = 7/79 (8%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 99 ELIMDIPIDVQIMLGTNRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVL 158
Query: 293 GK---NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 159 DNDDTRFGVKLIEVLSTKK 177
>gi|110632666|ref|YP_672874.1| flagellar motor switch protein FliN [Mesorhizobium sp. BNC1]
gi|110283650|gb|ABG61709.1| flagellar motor switch protein FliN [Chelativorans sp. BNC1]
Length = 121
Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
TL K S+ ++ + D + V + + + T+ +++ L+ G
Sbjct: 15 TLDKAIEEMRSALHEEAQPNMDAEK--TGFLVDIPVELQIVLGSAEMTVSELMALQRGST 72
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDR 303
+ R + NG+ I E+ + + +R+T+
Sbjct: 73 VSLDRRIGEPVEIMVNGRLIARGEITILENDPSRFGVRLTEI 114
>gi|320324516|gb|EFW80593.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
Length = 344
Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T+ + ++N S ++ D +L + + ++ + TL + +
Sbjct: 241 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 299
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 300 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 338
>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040365|gb|ACT57161.1| putative flagellar motor switch protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 147
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V + + + ++V L G VI R ++ N ++I E+ +
Sbjct: 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIM 129
Query: 293 GK---NYTIRITDRINFD 307
+ ++ +R+ + +N
Sbjct: 130 EEDDTHFGVRVIEILNAQ 147
>gi|298487103|ref|ZP_07005153.1| type III secretion system apparatus protein [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298158346|gb|EFH99416.1| type III secretion system apparatus protein [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 301
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T+ + ++N S ++ D +L + + ++ + TL + +
Sbjct: 198 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 256
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 257 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 295
>gi|71733523|ref|YP_274730.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554076|gb|AAZ33287.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 301
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T+ + ++N S ++ D +L + + ++ + TL + +
Sbjct: 198 PLRTVSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 256
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 257 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 295
>gi|39545586|gb|AAR27893.1| AscQ [Aeromonas hydrophila]
Length = 307
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 30/237 (12%)
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVE------KKLAKRTIAQ 141
+L + L+E L + + L +L+ + + + + +
Sbjct: 72 APDLQQAALFSLPESLQLALIERL----GQPLGNLSCSALAPIATNEAAGQPALQLLLKR 127
Query: 142 ISAVLNQCISTTQES---SPNLEDFYDIDYLKKNTNRLSNEFVTTINMN-MTIENV---- 193
A L ++ P + + + V + ++ +V
Sbjct: 128 EGATLAFWLAEPGPLFGKLPTRPSQQRLTLPLTLSLQWGAMRVAISELETLSYGDVLLPL 187
Query: 194 -----ASSFVLII---PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+L + P L + + A + L + +
Sbjct: 188 PHPLLGQQLLLCVEGRPFAYCLPHQQHLELTAMHNAADDNLD----ATQLDNLPIQVTFE 243
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + + TL+ G +I + +NG ++ S L + +R+
Sbjct: 244 VGRQTLDWHSLTTLQPGSLIDLGTPIDGEVRIISNGHQLGSGRLVEIQGRLGVRVES 300
>gi|150395475|ref|YP_001325942.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
gi|150026990|gb|ABR59107.1| flagellar motor switch protein FliN [Sinorhizobium medicae WSM419]
Length = 215
Score = 58.9 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++I + + + ++ L G I + + NG+ I E+ +
Sbjct: 137 DLIMDIPIDIQIVLGTSRMQVSSLMNLTEGATIALDRKIGEPVEIMVNGRVIGRGEITVL 196
Query: 293 GK---NYTIRITDR 303
+ +++ +
Sbjct: 197 EGDVTRFGVKLLEI 210
>gi|148558477|ref|YP_001257190.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
25840]
gi|148369762|gb|ABQ62634.1| putative flagellar motor switch protein FliN [Brucella ovis ATCC
25840]
Length = 115
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + ++ L G VI + + NG+ I E+ +
Sbjct: 39 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 99 EDDSSRFGVSLTEIIGK 115
>gi|330985214|gb|EGH83317.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 351
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T + ++N S ++ D +L + + ++ + TL + +
Sbjct: 248 PLRTFSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345
>gi|257487957|ref|ZP_05641998.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331008646|gb|EGH88702.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 351
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
P T + ++N S ++ D +L + + ++ + TL + +
Sbjct: 248 PLRTFSPHYVSHTFNRNDSMSEMTD-GSDLDTSLDELPLTLVCQLGSVELTLAQLREMAP 306
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
G ++P L NG+ I EL +G +R+
Sbjct: 307 GSLLPLAGSRHDEVDLMVNGRRIGRGELVSIGDGLGVRL 345
>gi|189022343|ref|YP_001932084.1| Flagellar motor switch FliN protein [Brucella abortus S19]
gi|225628599|ref|ZP_03786633.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
gi|237816638|ref|ZP_04595630.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
gi|254691435|ref|ZP_05154689.1| Flagellar motor switch FliN protein [Brucella abortus bv. 6 str.
870]
gi|254695266|ref|ZP_05157094.1| Flagellar motor switch FliN protein [Brucella abortus bv. 3 str.
Tulya]
gi|254698365|ref|ZP_05160193.1| Flagellar motor switch FliN protein [Brucella abortus bv. 2 str.
86/8/59]
gi|254699434|ref|ZP_05161262.1| Flagellar motor switch FliN protein [Brucella suis bv. 5 str. 513]
gi|254706319|ref|ZP_05168147.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
M163/99/10]
gi|254711389|ref|ZP_05173200.1| Flagellar motor switch FliN protein [Brucella pinnipedialis B2/94]
gi|254711988|ref|ZP_05173799.1| Flagellar motor switch FliN protein [Brucella ceti M644/93/1]
gi|254715058|ref|ZP_05176869.1| Flagellar motor switch FliN protein [Brucella ceti M13/05/1]
gi|254720634|ref|ZP_05182445.1| Flagellar motor switch FliN protein [Brucella sp. 83/13]
gi|256029981|ref|ZP_05443595.1| Flagellar motor switch FliN protein [Brucella pinnipedialis
M292/94/1]
gi|256043046|ref|ZP_05445991.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256111968|ref|ZP_05452919.1| Flagellar motor switch FliN protein [Brucella melitensis bv. 3 str.
Ether]
gi|256256621|ref|ZP_05462157.1| Flagellar motor switch FliN protein [Brucella abortus bv. 9 str.
C68]
gi|256262890|ref|ZP_05465422.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
63/9]
gi|260544316|ref|ZP_05820137.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
gi|260564278|ref|ZP_05834763.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
16M]
gi|260568541|ref|ZP_05839010.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
gi|260757054|ref|ZP_05869402.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
870]
gi|260759575|ref|ZP_05871923.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
292]
gi|260762819|ref|ZP_05875151.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
86/8/59]
gi|260882864|ref|ZP_05894478.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
C68]
gi|261215631|ref|ZP_05929912.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
Tulya]
gi|261216765|ref|ZP_05931046.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
gi|261313766|ref|ZP_05952963.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M163/99/10]
gi|261318995|ref|ZP_05958192.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
gi|261319632|ref|ZP_05958829.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
gi|261749885|ref|ZP_05993594.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
gi|265985678|ref|ZP_06098413.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
gi|265987002|ref|ZP_06099559.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M292/94/1]
gi|265989484|ref|ZP_06102041.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993417|ref|ZP_06105974.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
Ether]
gi|294853147|ref|ZP_06793819.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
07-0026]
gi|297249978|ref|ZP_06933679.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
str. B3196]
gi|306837358|ref|ZP_07470237.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
gi|306841072|ref|ZP_07473795.1| flagellar motor switch protein FliN [Brucella sp. BO2]
gi|306846303|ref|ZP_07478864.1| flagellar motor switch protein FliN [Brucella sp. BO1]
gi|189020917|gb|ACD73638.1| Flagellar motor switch FliN protein [Brucella abortus S19]
gi|225616445|gb|EEH13493.1| flagellar motor switch protein FliN [Brucella ceti str. Cudo]
gi|237787451|gb|EEP61667.1| flagellar motor switch protein FliN [Brucella abortus str. 2308 A]
gi|260097587|gb|EEW81461.1| flagellar motor switch FliN protein [Brucella abortus NCTC 8038]
gi|260151921|gb|EEW87014.1| flagellar motor switch FliN protein [Brucella melitensis bv. 1 str.
16M]
gi|260155206|gb|EEW90287.1| flagellar motor switch FliN protein [Brucella suis bv. 4 str. 40]
gi|260669893|gb|EEX56833.1| flagellar motor switch protein FliN [Brucella abortus bv. 4 str.
292]
gi|260673240|gb|EEX60061.1| flagellar motor switch protein FliN [Brucella abortus bv. 2 str.
86/8/59]
gi|260677162|gb|EEX63983.1| flagellar motor switch protein FliN [Brucella abortus bv. 6 str.
870]
gi|260872392|gb|EEX79461.1| flagellar motor switch protein FliN [Brucella abortus bv. 9 str.
C68]
gi|260917238|gb|EEX84099.1| flagellar motor switch protein FliN [Brucella abortus bv. 3 str.
Tulya]
gi|260921854|gb|EEX88422.1| flagellar motor switch protein FliN [Brucella ceti M13/05/1]
gi|261292322|gb|EEX95818.1| flagellar motor switch protein FliN [Brucella ceti M644/93/1]
gi|261298218|gb|EEY01715.1| flagellar motor switch protein FliN [Brucella pinnipedialis B2/94]
gi|261302792|gb|EEY06289.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M163/99/10]
gi|261739638|gb|EEY27564.1| flagellar motor switch protein FliN [Brucella suis bv. 5 str. 513]
gi|262764287|gb|EEZ10319.1| flagellar motor switch protein FliN [Brucella melitensis bv. 3 str.
Ether]
gi|263000153|gb|EEZ12843.1| flagellar motor switch protein FliN [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092727|gb|EEZ16936.1| flagellar motor switch FliN protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659199|gb|EEZ29460.1| flagellar motor switch protein FliN [Brucella pinnipedialis
M292/94/1]
gi|264664270|gb|EEZ34531.1| flagellar motor switch protein FliN [Brucella sp. 83/13]
gi|294818802|gb|EFG35802.1| flagellar motor switch protein FliN/FliY [Brucella sp. NVSL
07-0026]
gi|297173847|gb|EFH33211.1| flagellar motor switch protein FliN/FliY [Brucella abortus bv. 5
str. B3196]
gi|306273298|gb|EFM55167.1| flagellar motor switch protein FliN [Brucella sp. BO1]
gi|306288910|gb|EFM60213.1| flagellar motor switch protein FliN [Brucella sp. BO2]
gi|306407550|gb|EFM63750.1| flagellar motor switch protein FliN [Brucella sp. NF 2653]
gi|326410310|gb|ADZ67374.1| Flagellar motor switch FliN protein [Brucella melitensis M28]
gi|326553603|gb|ADZ88242.1| Flagellar motor switch FliN protein [Brucella melitensis M5-90]
Length = 115
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + ++ L G VI + + NG+ I E+ +
Sbjct: 39 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 99 EDDSSRFGVSLTEIIGK 115
>gi|186896785|ref|YP_001873897.1| putative flagellar motor switch protein [Yersinia
pseudotuberculosis PB1/+]
gi|186699811|gb|ACC90440.1| putative flagellar motor switch protein [Yersinia
pseudotuberculosis PB1/+]
Length = 299
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
N L++ +L + G S E + L+ E++L + +I+
Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
+ + + I + I+ + N + F + I
Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + K+ ++ L + +L V + ++++ TL +++ LK G
Sbjct: 193 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEYLVKKLPVTLTSQLSNINLTLAELMALKEG 252
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+I E + + ++S +
Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284
>gi|51597651|ref|YP_071842.1| flagellar motor switch protein. [Yersinia pseudotuberculosis IP
32953]
gi|51590933|emb|CAH22589.1| Putative flagellar motor switch protein [Yersinia
pseudotuberculosis IP 32953]
Length = 303
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
N L++ +L + G S E + L+ E++L + +I+
Sbjct: 89 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 148
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
+ + + I + I+ + N + F + I
Sbjct: 149 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 196
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + K+ ++ L + +L V + ++++ TL +++ LK G
Sbjct: 197 PHIDRLIDTIKTKSEKAVEKNVSLSERQLEYLVKKLPVTLTSQLSNINLTLAELMALKEG 256
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+I E + + ++S +
Sbjct: 257 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 288
>gi|254234793|ref|ZP_04928116.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
gi|126166724|gb|EAZ52235.1| translocation protein in type III secretion [Pseudomonas aeruginosa
C3719]
Length = 309
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|319795615|ref|YP_004157255.1| type III secretion system apparatus protein yscq/hrcq [Variovorax
paradoxus EPS]
gi|315598078|gb|ADU39144.1| type III secretion system apparatus protein YscQ/HrcQ [Variovorax
paradoxus EPS]
Length = 379
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 7/137 (5%)
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFA--- 232
+ ++ I A + + + + S+ + + A
Sbjct: 244 TPLDAAIVVS--AQIGRRAGFRLFAFAEGSRITIQQSLHSAMKQDPAAPIAAAESGASLP 301
Query: 233 -RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK-TCAILSANGKEIYSCELG 290
+ L V + + + +L ++ L+ G V + + A+G + L
Sbjct: 302 IDRLDALEVMLRFEVGDIELSLGELKALRPGHVFDLGQPLNRSPIRILAHGNVLGKGYLV 361
Query: 291 RVGKNYTIRITDRINFD 307
VG +R+++ +
Sbjct: 362 AVGDRLGVRVSEFAPGE 378
>gi|253988530|ref|YP_003039886.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211637888|emb|CAR66517.1| type iii secretion component protein sctq [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779980|emb|CAQ83141.1| type iii secretion component protein sctq [Photorhabdus
asymbiotica]
Length = 309
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ + + L + +L+ G ++ + N K + S L +
Sbjct: 235 LNSLEIHVSFEVGRQTLDLHTLTSLQPGSLLDLGVPPDGEVRILVNQKCLGSGRLVDIQG 294
Query: 295 NYTIRITDRINFDQK 309
+R+ +R+ +++
Sbjct: 295 RLGVRV-ERLAMEKE 308
Score = 36.9 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 25/113 (22%), Gaps = 22/113 (19%)
Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK 234
S+ + L P I Q +
Sbjct: 112 APSSSACVLLRFERQ--GATLPLWLTEPS----PLLAILPKRQPG--------------E 151
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF--LHREKTCAILSANGKEIY 285
+ + + + TL + TL+ G V+ + T + G
Sbjct: 152 YLTIPLLLSLQWGAINLTLNEFRTLESGDVLLLPPQQQPDTPLLGYLEGHPWA 204
>gi|218892350|ref|YP_002441217.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
gi|218772576|emb|CAW28359.1| translocation protein in type III secretion [Pseudomonas aeruginosa
LESB58]
Length = 309
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|107101126|ref|ZP_01365044.1| hypothetical protein PaerPA_01002158 [Pseudomonas aeruginosa PACS2]
gi|254240039|ref|ZP_04933361.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
gi|126193417|gb|EAZ57480.1| translocation protein in type III secretion [Pseudomonas aeruginosa
2192]
Length = 309
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|23499886|ref|NP_699326.1| flagellar motor switch protein FliN [Brucella suis 1330]
gi|23463461|gb|AAN33331.1| flagellar motor switch protein FliN, putative [Brucella suis 1330]
Length = 106
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + ++ L G VI + + NG+ I E+ +
Sbjct: 30 DLIMGIPVDVQVVLGGTTMPVSSLMKLGCGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 90 EDDSSRFGVSLTEIIGK 106
>gi|17989457|ref|NP_542090.1| flagellar motor switch protein FLIN [Brucella melitensis bv. 1 str.
16M]
gi|62317076|ref|YP_222929.1| flagellar motor switch protein FliN [Brucella abortus bv. 1 str.
9-941]
gi|83269069|ref|YP_418360.1| flagellar motor switch FliN [Brucella melitensis biovar Abortus
2308]
gi|161620209|ref|YP_001594095.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
gi|225685984|ref|YP_002733956.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
23457]
gi|254731810|ref|ZP_05190388.1| Flagellar motor switch FliN protein [Brucella abortus bv. 4 str.
292]
gi|256014913|ref|YP_003104922.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
gi|17985336|gb|AAL54354.1| flagellar motor switch protein flin [Brucella melitensis bv. 1 str.
16M]
gi|62197269|gb|AAX75568.1| flagellar motor switch protein FliN, hypothetical [Brucella abortus
bv. 1 str. 9-941]
gi|82939343|emb|CAJ12288.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Brucella melitensis biovar
Abortus 2308]
gi|161337020|gb|ABX63324.1| flagellar motor switch protein FliN [Brucella canis ATCC 23365]
gi|225642089|gb|ACO02002.1| flagellar motor switch protein FliN [Brucella melitensis ATCC
23457]
gi|255997573|gb|ACU49260.1| flagellar motor switch protein FliN [Brucella microti CCM 4915]
Length = 106
Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + ++ L G VI + + NG+ I E+ +
Sbjct: 30 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 90 EDDSSRFGVSLTEIIGK 106
>gi|296535009|ref|ZP_06897289.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
gi|296264664|gb|EFH11009.1| flagellar motor switch protein FliN [Roseomonas cervicalis ATCC
49957]
Length = 93
Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
++S + + + VN+ + K+ + + L G VI F +
Sbjct: 1 MSESAPTENPFLAERKPRIMDIPVNVQVVLGNKRLPMAALFNLSRGSVIEFDKKVGEPID 60
Query: 277 LSANGKEIYSCEL-GRVGKNYTIRITDRINF 306
L AN + I E+ +I IT+ ++
Sbjct: 61 LMANERLIARGEIQITDDGRLSISITEIVSS 91
>gi|27550058|gb|AAO18041.1| LscQ [Photorhabdus luminescens]
Length = 309
Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 25/70 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
L V++ + + L+ + +L+ G ++ + N K + S L +
Sbjct: 233 TDLNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGVVRILVNQKCLGSGRLVDI 292
Query: 293 GKNYTIRITD 302
+RI
Sbjct: 293 EGRLGVRIEH 302
>gi|238762375|ref|ZP_04623346.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
gi|238699360|gb|EEP92106.1| Flagellar switch protein [Yersinia kristensenii ATCC 33638]
Length = 105
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 30/90 (33%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
++ + + S+ ++ V + + L +++++ VI
Sbjct: 3 FSVPTASVPAVDNSQHEQQRKISLFSRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKL 62
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ NG E+ V + Y +RI
Sbjct: 63 AGEPLDIKINGIMFGQAEVVVVNEKYGLRI 92
>gi|49083573|gb|AAT51064.1| PA1694 [synthetic construct]
Length = 310
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|149203109|ref|ZP_01880080.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
TM1035]
gi|149143655|gb|EDM31691.1| surface presentation of antigens (SPOA) protein [Roseovarius sp.
TM1035]
Length = 98
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 4/96 (4%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ +E ++ + + I + + ++D++ L V+ R
Sbjct: 1 MDNKTGGNETHVNDLQNPFSSVPIEITVSVGKARPLIRDLLKLGKNAVLVLDRRVDDAVE 60
Query: 277 LSANGKEIYSCEL----GRVGKNYTIRITDRINFDQ 308
L + I +L G +R+T+ N
Sbjct: 61 LYVGERLIARGQLEELAGDQQGQIAVRVTEVANLQD 96
>gi|92117688|ref|YP_577417.1| hypothetical protein Nham_2162 [Nitrobacter hamburgensis X14]
gi|91800582|gb|ABE62957.1| surface presentation of antigens (SPOA) protein [Nitrobacter
hamburgensis X14]
Length = 87
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 25/75 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V++ + + V+ L G +I E+ + AN + S +
Sbjct: 11 LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVVVNRN 70
Query: 295 NYTIRITDRINFDQK 309
+ + +
Sbjct: 71 RIAVEVKQMLPRTPD 85
>gi|116049644|ref|YP_791551.1| type III secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115584865|gb|ABJ10880.1| translocation protein in type III secretion [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 309
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|77464888|ref|YP_354392.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
gi|126463730|ref|YP_001044844.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
gi|77389306|gb|ABA80491.1| hypothetical protein RSP_1310 [Rhodobacter sphaeroides 2.4.1]
gi|126105394|gb|ABN78072.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17029]
Length = 88
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
Q+ + I + + +++++ L+ V+P R L K I EL G
Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDKLIGRGELTELEG 68
Query: 291 RVGKNYTIRITDRIN 305
+R+T+ N
Sbjct: 69 EQAGQLAVRLTEVAN 83
>gi|15596891|ref|NP_250385.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
gi|9947667|gb|AAG05083.1|AE004596_9 translocation protein in type III secretion [Pseudomonas aeruginosa
PAO1]
Length = 309
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|163844318|ref|YP_001621973.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
gi|163675041|gb|ABY39151.1| flagellar motor switch protein FliN [Brucella suis ATCC 23445]
Length = 106
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + ++ L +G VI + + NG+ I E+ +
Sbjct: 30 DLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 89
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 90 EDDSPRFGVSLTEIIGK 106
>gi|296389922|ref|ZP_06879397.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
Length = 309
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDSALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|313110380|ref|ZP_07796269.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
gi|310882771|gb|EFQ41365.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
[Pseudomonas aeruginosa 39016]
Length = 309
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 30/75 (40%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + + + + L + TL+ G ++ + AN + + EL R+
Sbjct: 234 ELDQLPIPVSFEVGRRTLDLHTLSTLQPGSLLDLDCALDGEVRILANQRCLGIGELVRLQ 293
Query: 294 KNYTIRITDRINFDQ 308
+R+T D+
Sbjct: 294 DRLGVRVTRLFGHDE 308
>gi|300024613|ref|YP_003757224.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526434|gb|ADJ24903.1| surface presentation of antigens (SPOA) protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 140
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V + + K + + L G V+ + NG I E+ + +
Sbjct: 62 IAGLPVMMKVVLGSAKMPVATLAKLAKGSVVKLDKMVGDPVDILVNGHLIARGEVVILNE 121
>gi|312115254|ref|YP_004012850.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311220383|gb|ADP71751.1| surface presentation of antigens (SPOA) protein [Rhodomicrobium
vannielii ATCC 17100]
Length = 120
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ ++ +++ + + V L G VIP + + NG+ I E+ +
Sbjct: 41 ERVLRIPLSLKVLLGSASMPIYQVTKLGRGAVIPLDRKVGDAVDVMINGRIIAKGEIVVL 100
Query: 293 GK---NYTIRITDRIN 305
+ + + +T+ I+
Sbjct: 101 DEEGSRFGVTLTEMID 116
>gi|75675922|ref|YP_318343.1| hypothetical protein Nwi_1730 [Nitrobacter winogradskyi Nb-255]
gi|74420792|gb|ABA04991.1| Surface presentation of antigens (SPOA) protein [Nitrobacter
winogradskyi Nb-255]
Length = 97
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 26/76 (34%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V++ + + V+ L G +I E+ + AN + S +
Sbjct: 21 LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILANNLPVASGVVMVNRN 80
Query: 295 NYTIRITDRINFDQKS 310
T+ + +
Sbjct: 81 RITVEVKQMLPRAPDR 96
>gi|225849155|ref|YP_002729319.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643799|gb|ACN98849.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 83
Score = 58.1 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + V + ++ + ++ +K G +IP + I+ E+ +
Sbjct: 8 KLLKDVEVEVRVELSTIVRNFEFLLNIKEGDIIPLEKSLEDFLIMHVGNIPFAIGEMTNI 67
Query: 293 GKNYTIRITDRINFD 307
+ Y IRI D I D
Sbjct: 68 NEKYGIRIVDLIKED 82
>gi|323139659|ref|ZP_08074701.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
gi|322395091|gb|EFX97650.1| flagellar motor switch protein FliN [Methylocystis sp. ATCC 49242]
Length = 124
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
+ + + ++ V + + + ++ L G VIP HR + NG
Sbjct: 32 DTDKSQLRRI-DSILRIPVVVQVVVGSATLPVSSLLKLGRGAVIPLDHRVGDPVDIVVNG 90
Query: 282 KEIYSCELGRV---GKNYTIRITDRINFDQKSLK 312
+ I E+ V G + + +T+ + L
Sbjct: 91 RTIARGEVVVVEEDGARFGVSLTEICEPQNEQLN 124
>gi|327254532|gb|EGE66148.1| surface presentation of antigens family protein [Escherichia coli
STEC_7v]
Length = 123
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112
>gi|302383505|ref|YP_003819328.1| surface presentation of antigens (SPOA) protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302194133|gb|ADL01705.1| surface presentation of antigens (SPOA) protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 83
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 23/71 (32%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ ++V + + + ++ + G VIP E + AN + +
Sbjct: 1 MSQIEAVDVELSVVLGRSVLPMSQLLKMGRGAVIPLDASEHDEVWILANNHPVARGMIEI 60
Query: 292 VGKNYTIRITD 302
I +T
Sbjct: 61 REDRIAITVTR 71
>gi|148256234|ref|YP_001240819.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
gi|146408407|gb|ABQ36913.1| hypothetical protein BBta_4891 [Bradyrhizobium sp. BTAi1]
Length = 99
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 28/90 (31%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ S D P ++ V++ + + V+ L G +I E
Sbjct: 3 MSSVTESSRDFGGPAVSTLDKVTVDLMVVLGTCSMPIHQVLRLSRGAIIELDATEADDVK 62
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ AN I + + + + + +
Sbjct: 63 VLANNLPIANGVVLVDRNRIAVEVKEMLPR 92
>gi|22127342|ref|NP_670765.1| hypothetical protein y3467 [Yersinia pestis KIM 10]
gi|45442782|ref|NP_994321.1| flagellar motor switch protein [Yersinia pestis biovar Microtus
str. 91001]
gi|108810734|ref|YP_646501.1| flagellar motor switch protein [Yersinia pestis Nepal516]
gi|145597803|ref|YP_001161879.1| flagellar motor switch protein [Yersinia pestis Pestoides F]
gi|150260263|ref|ZP_01916991.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165924818|ref|ZP_02220650.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939061|ref|ZP_02227613.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009073|ref|ZP_02229971.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212096|ref|ZP_02238131.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167419140|ref|ZP_02310893.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425206|ref|ZP_02316959.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167466355|ref|ZP_02331059.1| flagellar motor switch protein [Yersinia pestis FV-1]
gi|229837394|ref|ZP_04457557.1| Flagellar motor switch protein fliM [Yersinia pestis Pestoides A]
gi|229840607|ref|ZP_04460766.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842842|ref|ZP_04462994.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
Orientalis str. India 195]
gi|229900931|ref|ZP_04516055.1| Flagellar motor switch protein fliM [Yersinia pestis Nepal516]
gi|294502775|ref|YP_003566837.1| hypothetical protein YPZ3_0665 [Yersinia pestis Z176003]
gi|21960425|gb|AAM87016.1|AE013950_1 hypothetical [Yersinia pestis KIM 10]
gi|45437648|gb|AAS63198.1| Flagellar motor switch protein [Yersinia pestis biovar Microtus
str. 91001]
gi|108774382|gb|ABG16901.1| flagellar motor switch protein [Yersinia pestis Nepal516]
gi|145209499|gb|ABP38906.1| flagellar motor switch protein [Yersinia pestis Pestoides F]
gi|149289671|gb|EDM39748.1| lateral flagellar motor switch (C ring) protein [Yersinia pestis
CA88-4125]
gi|165913017|gb|EDR31642.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923018|gb|EDR40169.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992412|gb|EDR44713.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206842|gb|EDR51322.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963134|gb|EDR59155.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167055969|gb|EDR65750.1| lateral flagellar export/assembly protein [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229682270|gb|EEO78362.1| Flagellar motor switch protein fliM [Yersinia pestis Nepal516]
gi|229690109|gb|EEO82166.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696973|gb|EEO87020.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705517|gb|EEO91527.1| Flagellar motor switch protein fliM [Yersinia pestis Pestoides A]
gi|262360807|gb|ACY57528.1| hypothetical protein YPD4_0619 [Yersinia pestis D106004]
gi|262364752|gb|ACY61309.1| hypothetical protein YPD8_0619 [Yersinia pestis D182038]
gi|294353234|gb|ADE63575.1| hypothetical protein YPZ3_0665 [Yersinia pestis Z176003]
gi|320016725|gb|ADW00297.1| Flagellar motor switch protein fliM [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 299
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
N L++ +L + G S E + L+ E++L + +I+
Sbjct: 85 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 144
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
+ + + I + I+ + N + F + I
Sbjct: 145 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 192
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + K+ ++ L + +L V + ++++ TL +++ LK G
Sbjct: 193 PHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 252
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+I E + + ++S +
Sbjct: 253 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 284
>gi|218927898|ref|YP_002345773.1| putative flagellar motor switch protein [Yersinia pestis CO92]
gi|115346509|emb|CAL19385.1| putative flagellar motor switch protein [Yersinia pestis CO92]
Length = 303
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 24/214 (11%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNR---------SLSTVEKKLAKRTIAQIS 143
N L++ +L + G S E + L+ E++L + +I+
Sbjct: 89 GNIAFDIDRLLLLNILNDYYGLSQEKYGLSQEKKTTTTGKLSPLTKTEERLKNKLGLEIT 148
Query: 144 AVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQ 203
+ + + I + I+ + N + F + I
Sbjct: 149 DLF---------LNQPFFGEHLIINNSTAALIA--CWSYRIDFFLKDYNKSG-FSIFIDA 196
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + K+ ++ L + +L V + ++++ TL +++ LK G
Sbjct: 197 PHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAELMALKEG 256
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+I E + + ++S +
Sbjct: 257 DIISASLPEYFP--VFIGKEALFSAAITENRGKL 288
>gi|256059634|ref|ZP_05449831.1| Flagellar motor switch FliN protein [Brucella neotomae 5K33]
gi|261323604|ref|ZP_05962801.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
gi|261299584|gb|EEY03081.1| flagellar motor switch protein FliN [Brucella neotomae 5K33]
Length = 115
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++ + + ++ L G VI + + NG+ I E+ +
Sbjct: 39 DLIMGIPVDVQMVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEVIVL 98
Query: 293 GK---NYTIRITDRINF 306
+ + +T+ I
Sbjct: 99 EDDSSRFGVSLTEIIGK 115
>gi|28628131|gb|AAO34615.1| HrcQ [Erwinia chrysanthemi]
Length = 413
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + R TL+D+ L G V+ A L + + EL V ++
Sbjct: 337 LALTVRCGYLTLTLQDLQQLAPGSVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 396
Query: 300 ITDRINFDQKS 310
IT R+ D +
Sbjct: 397 ITRRLGVDGEI 407
>gi|159184368|ref|NP_353589.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
C58]
gi|3913685|sp|Q57259|FLIN_AGRT5 RecName: Full=Flagellar motor switch protein FliN
gi|39092|emb|CAA46543.1| FliN homologue [Agrobacterium tumefaciens]
gi|1480839|gb|AAC45323.1| FliN [Agrobacterium tumefaciens]
gi|2459704|gb|AAB71780.1| FliN [Agrobacterium tumefaciens]
gi|159139682|gb|AAK86374.2| flagellar motor switch protein FliN [Agrobacterium tumefaciens str.
C58]
Length = 179
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 7/80 (8%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +++ + + + +++L+ G I + + NG+ I E+
Sbjct: 99 MEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITV 158
Query: 292 VGK---NYTIRITDRINFDQ 308
+ + +++ + ++ +
Sbjct: 159 LEDDDTRFGVKLIEVLSTRK 178
>gi|260574385|ref|ZP_05842389.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
gi|259023281|gb|EEW26573.1| surface presentation of antigens (SPOA) protein [Rhodobacter sp.
SW2]
Length = 89
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291
Q+ + I + + ++D++ L+ V+P R L + I EL G
Sbjct: 11 SQVPIEITISVGKARPQVRDLLKLQRDAVLPLDRRVDDPVELYVGDRLIARGELQELDGD 70
Query: 292 VGKNYTIRITDRIN 305
+R+T+ N
Sbjct: 71 QAGQLAVRLTEVAN 84
>gi|662861|gb|AAA79753.1| flagellar protein [Pseudomonas aeruginosa]
Length = 65
Score = 57.7 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + ++ L+D++ ++ G VIP ++ ANG + +LG N ++I
Sbjct: 1 LGATVVRRQLKLRDILHMQPGDVIPVEMP--EHMVMRANGVPAFKVKLGAHKGNLALQIL 58
Query: 302 DRINF 306
+ +
Sbjct: 59 EAVER 63
>gi|255654316|ref|ZP_05399725.1| flagellar motor switch protein [Clostridium difficile QCD-23m63]
gi|296452606|ref|ZP_06894300.1| flagellar motor switch protein [Clostridium difficile NAP08]
gi|296880982|ref|ZP_06904928.1| flagellar motor switch protein [Clostridium difficile NAP07]
gi|296258567|gb|EFH05468.1| flagellar motor switch protein [Clostridium difficile NAP08]
gi|296428003|gb|EFH13904.1| flagellar motor switch protein [Clostridium difficile NAP07]
Length = 104
Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + VN+ I T+K+++ LK G +I + AN + E
Sbjct: 27 NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESII 86
Query: 292 VGKNYTIRITDRINFD 307
+ ++R++ + D
Sbjct: 87 TNEKLSVRLSKIEDSD 102
>gi|85706152|ref|ZP_01037247.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
gi|85669316|gb|EAQ24182.1| flagellar motor switch protein FliN [Roseovarius sp. 217]
Length = 100
Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 4/97 (4%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + S + + I + + +++D++ L V+ R
Sbjct: 1 MMDVGPDDSGGFTSDLQNPFSSVPIEITVSVGKARPSIRDLLKLGKNAVLVLDRRVDDMV 60
Query: 276 ILSANGKEIYSCEL----GRVGKNYTIRITDRINFDQ 308
L + + L G +R+T+ N
Sbjct: 61 ELYVGERLVARGRLEELDGDQQGQIAVRVTEVANLQD 97
>gi|328543417|ref|YP_004303526.1| surface presentation of antigens protein [polymorphum gilvum
SL003B-26A1]
gi|326413162|gb|ADZ70225.1| Putative surface presentation of antigens protein [Polymorphum
gilvum SL003B-26A1]
Length = 88
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 32/75 (42%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+++V+I + + + ++ + G VI E+ + AN + ++ +G+
Sbjct: 5 DEISVDISVVLGTTEMPVHQLLRMGRGAVIDLDVAEEDDVKIFANNTLVAKGQVVLLGER 64
Query: 296 YTIRITDRINFDQKS 310
+ IT+ + +
Sbjct: 65 IGVSITEVLMRAPEV 79
>gi|89069802|ref|ZP_01157137.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
gi|89044603|gb|EAR50719.1| hypothetical protein OG2516_09959 [Oceanicola granulosus HTCC2516]
Length = 96
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
+ + I + + ++ +++TL V+P L + I EL G
Sbjct: 17 LRAVPIEITIVVGRARPSVGELLTLDQNAVLPLDRGVDDPVELYVGDRLIARGELQEHAG 76
Query: 291 RVGKNYTIRITDR 303
+R+T+
Sbjct: 77 GEPGQLAVRLTEV 89
>gi|332559787|ref|ZP_08414109.1| FliN2 [Rhodobacter sphaeroides WS8N]
gi|332277499|gb|EGJ22814.1| FliN2 [Rhodobacter sphaeroides WS8N]
Length = 88
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
Q+ + I + + +++++ L+ V+P R L + I EL G
Sbjct: 9 LTQVPIEITISVGRARPPVRELLRLQRDAVLPLDRRVDDPVELYVGDRLIGRGELTELEG 68
Query: 291 RVGKNYTIRITDRIN 305
+R+T+ N
Sbjct: 69 EQAGQLAVRLTEVAN 83
>gi|323975948|gb|EGB71042.1| flagellar motor switch protein FliN [Escherichia coli TW10509]
Length = 123
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112
>gi|306813324|ref|ZP_07447517.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli NC101]
gi|305854087|gb|EFM54526.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli NC101]
Length = 123
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112
>gi|331645399|ref|ZP_08346503.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli M605]
gi|331045561|gb|EGI17687.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli M605]
Length = 283
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGFPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + SSF +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|34498080|ref|NP_902295.1| surface presentation of antigens protein SpaO [Chromobacterium
violaceum ATCC 12472]
gi|34103935|gb|AAQ60295.1| surface presentation of antigens; secretory proteins
[Chromobacterium violaceum ATCC 12472]
Length = 296
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 21/228 (9%)
Query: 93 SNFFIGCSNNLVITLLENLLG----ASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
S C L + + LG QL R + ++ + + + A
Sbjct: 79 SELIAACEAPLSWPVADMPLGRIVAGERREGSQLPQRPMLRMDTPQGEVWLEKAPAPAEA 138
Query: 149 CISTTQESSP---NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI---ENVASSFVLIIP 202
P + + + + T+ ++
Sbjct: 139 ARDRVPGWLPMPLRFLLGDSMVSPSLLRRAKAGDVLLISRPAQTVSCNGRAIGTY----- 193
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
Q T + + + +L V ++ + + TL ++ L
Sbjct: 194 QWTEEGIIMEWQNEMAAAAETRPL------ADLDRLPVRLEFVLQQSEVTLDELRELCRS 247
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
V+P + L ANG + EL ++ + + +
Sbjct: 248 NVLPLSADAERRVELRANGALLGRGELVQLDGRLGVEVAQWLGGSGDV 295
>gi|170679793|ref|YP_001742353.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
SMS-3-5]
gi|300936106|ref|ZP_07151046.1| putative flagellar motor switch protein FliN [Escherichia coli MS
21-1]
gi|170517511|gb|ACB15689.1| lateral flagellar export/assembly protein LfiN [Escherichia coli
SMS-3-5]
gi|300458726|gb|EFK22219.1| putative flagellar motor switch protein FliN [Escherichia coli MS
21-1]
Length = 123
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112
>gi|238752882|ref|ZP_04614347.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
gi|238708921|gb|EEQ01174.1| Flagellar switch protein [Yersinia rohdei ATCC 43380]
Length = 112
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
T L I S N S ++ + I F ++ V + + L +++T+
Sbjct: 6 ISTPLPVEPIEAPSVNDSLHEQQRKISLF----SRIPVTLTLEVASVDIPLSELMTVNSD 61
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
VI + NG E+ + + Y +RI
Sbjct: 62 SVIELDKLAGEPLDIKVNGIMFGQAEVVVINEKYGLRIVS 101
>gi|325291949|ref|YP_004277813.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
gi|45479284|gb|AAS66686.1| FliN [Agrobacterium sp. H13-3]
gi|325059802|gb|ADY63493.1| flagellar motor switch protein FliN [Agrobacterium sp. H13-3]
Length = 179
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 7/80 (8%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +++ + + + +++L+ G I + + NG+ I E+
Sbjct: 99 MDLIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITV 158
Query: 292 VGK---NYTIRITDRINFDQ 308
+ + +++ + ++ +
Sbjct: 159 LEDDDTRFGVKLIEVMSTRK 178
>gi|37527632|ref|NP_930976.1| type III secretion system protein [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787067|emb|CAE16142.1| Type III secretion component protein SctQ [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 310
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 25/70 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
L V++ + + L+ + +L+ G ++ + N K + S L +
Sbjct: 234 TDLNDLEVHVSFEVGRQTLDLQTLTSLQPGSLLDLGVPSDGAVRILVNQKCLGSGRLVDI 293
Query: 293 GKNYTIRITD 302
+R+
Sbjct: 294 EGRLGVRVEH 303
>gi|188494288|ref|ZP_03001558.1| flagellar motor switch protein FliN [Escherichia coli 53638]
gi|188489487|gb|EDU64590.1| flagellar motor switch protein FliN [Escherichia coli 53638]
Length = 127
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116
>gi|218133675|ref|ZP_03462479.1| hypothetical protein BACPEC_01544 [Bacteroides pectinophilus ATCC
43243]
gi|217991050|gb|EEC57056.1| hypothetical protein BACPEC_01544 [Bacteroides pectinophilus ATCC
43243]
Length = 220
Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/151 (11%), Positives = 47/151 (31%), Gaps = 9/151 (5%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL-SSWSSNFFIGCSNNLVI 105
++ VDI+ + + + V Q S N + N V
Sbjct: 67 ATTLSSLLNQRVDITTPHVSISTWDDLARQYDRPCVMMQISYKEGIDGNNVLILRENDVK 126
Query: 106 TLLENLLGASH--ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
+ + ++G + +L + LS + + + + + ++ + + SP + +
Sbjct: 127 IITDLMMGGPGNADPNEELTDLHLSAIGEA-MNQMMGSAATSMSSMFNRKIDISPPVSNL 185
Query: 164 YDIDYLKKNTNRLSNEFV---TTINMNMTIE 191
++ + + +TI
Sbjct: 186 VEVYNNDTEDL--PDFLKGKFVEVMFKLTIG 214
>gi|297621834|ref|YP_003709971.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
gi|297377135|gb|ADI38965.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
Length = 165
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ ++I + K +++ ++ L+ G I R ++ L NG + EL +VG+N
Sbjct: 97 NDIPLSIILEVGRLKMSMQTLMDLQPGNTIELDIRPESGIDLVVNGSRVAKGELLQVGEN 156
Query: 296 YTIRITD 302
IRI +
Sbjct: 157 LGIRILE 163
>gi|311087551|gb|ADP67630.1| flagellar motor switch protein FliM [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 183
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 7 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 66
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 67 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 126
Query: 142 ISAVLNQCISTTQ 154
I+ ++
Sbjct: 127 ITNAFSEIYKKYF 139
>gi|311085822|gb|ADP65904.1| flagellar motor switch protein FliM [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
Length = 178
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 1/133 (0%)
Query: 23 GKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFV 82
G+ + KI + + K F + V++ S + G +
Sbjct: 2 GESKNLHDEIKILEKINRHFSDEFTKFFSNFLKNSVELVSCSIKIGSCTSNKEIITNLRC 61
Query: 83 FSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYN-RSLSTVEKKLAKRTIAQ 141
+ + + FI N + +++ L G + R +++ E + K+ +
Sbjct: 62 LNLIEILPYKKKSFIIFPYNFLSNIIDILFGGQGDFKDHTKKIRDITSTESLVNKKIMKF 121
Query: 142 ISAVLNQCISTTQ 154
I+ ++
Sbjct: 122 ITNAFSEIYKKYF 134
>gi|170021378|ref|YP_001726332.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|218703507|ref|YP_002411026.1| lateral flagellar motor switch C ring FliN-like protein
[Escherichia coli UMN026]
gi|256020210|ref|ZP_05434075.1| Lateral flagellar export/assembly protein, Flagellar motor switch
(C ring) (FliN-like) [Shigella sp. D9]
gi|260853449|ref|YP_003227340.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli O26:H11 str. 11368]
gi|260866395|ref|YP_003232797.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli O111:H- str. 11128]
gi|300817290|ref|ZP_07097508.1| putative flagellar motor switch protein FliN [Escherichia coli MS
107-1]
gi|300898059|ref|ZP_07116428.1| putative flagellar motor switch protein FliN [Escherichia coli MS
198-1]
gi|301646792|ref|ZP_07246646.1| putative flagellar motor switch protein FliN [Escherichia coli MS
146-1]
gi|307136839|ref|ZP_07496195.1| putative lateral flagellar motor switching and energizing component
[Escherichia coli H736]
gi|307315215|ref|ZP_07594794.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|59889763|emb|CAH19118.1| Lateral flagellar export/assembly protein (FliN-like) [Escherichia
coli]
gi|169756306|gb|ACA79005.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|218430604|emb|CAR11470.1| Lateral flagellar export/assembly protein, Flagellar motor switch
(C ring) (FliN-like) [Escherichia coli UMN026]
gi|257752098|dbj|BAI23600.1| predicted lateral flagellar motor switching and energizing
component [Escherichia coli O26:H11 str. 11368]
gi|257762751|dbj|BAI34246.1| predicted lateral flagellar motor switching and energizing
component [Escherichia coli O111:H- str. 11128]
gi|284920027|emb|CBG33083.1| lateral flagellar export/assembly protein (FliN-like) [Escherichia
coli 042]
gi|300358237|gb|EFJ74107.1| putative flagellar motor switch protein FliN [Escherichia coli MS
198-1]
gi|300530266|gb|EFK51328.1| putative flagellar motor switch protein FliN [Escherichia coli MS
107-1]
gi|301075027|gb|EFK89833.1| putative flagellar motor switch protein FliN [Escherichia coli MS
146-1]
gi|306905396|gb|EFN35933.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|315059470|gb|ADT73797.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
gi|315616846|gb|EFU97463.1| flagellar motor switch family protein [Escherichia coli 3431]
gi|323158012|gb|EFZ44113.1| surface presentation of antigens family protein [Escherichia coli
EPECa14]
gi|323178513|gb|EFZ64091.1| surface presentation of antigens family protein [Escherichia coli
1180]
gi|323181528|gb|EFZ66948.1| surface presentation of antigens family protein [Escherichia coli
1357]
gi|323191517|gb|EFZ76778.1| surface presentation of antigens family protein [Escherichia coli
RN587/1]
gi|323379972|gb|ADX52240.1| surface presentation of antigens (SPOA) protein [Escherichia coli
KO11]
Length = 123
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112
>gi|327254533|gb|EGE66149.1| lateral flagellar export/assembly protein [Escherichia coli
STEC_7v]
Length = 283
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESRFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|163744332|ref|ZP_02151692.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
gi|161381150|gb|EDQ05559.1| flagellar motor switch protein [Oceanibulbus indolifex HEL-45]
Length = 154
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G ++ + L + + + +L +V
Sbjct: 76 NAMLNVGLDVQIVLGQARMPISRLLELTRGSIVELNRKIGAPVDLMVSDRLVARGDLVKV 135
Query: 293 G-KNYTIRITDRIN 305
G + +T +
Sbjct: 136 GEDRLGVSLTQIVK 149
>gi|170680472|ref|YP_001742354.1| lateral flagellar export/assembly protein LfiM [Escherichia coli
SMS-3-5]
gi|300936107|ref|ZP_07151047.1| surface presentation of antigens protein [Escherichia coli MS 21-1]
gi|170518190|gb|ACB16368.1| lateral flagellar export/assembly protein LfiM [Escherichia coli
SMS-3-5]
gi|300458727|gb|EFK22220.1| surface presentation of antigens protein [Escherichia coli MS 21-1]
Length = 283
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + SSF +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|84502360|ref|ZP_01000496.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
gi|84389172|gb|EAQ01969.1| Flagellar motor switch protein FliN [Oceanicola batsensis HTCC2597]
Length = 128
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 7/74 (9%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +NI + + + ++ L G +I + + N + + +L ++
Sbjct: 49 DAMLNVGLNIQIVLGRTRMPISQLLKLSRGSIIELDKKIGEPVDIVINDRLVARGDLVKL 108
Query: 293 G-KNYTIRITDRIN 305
+ + + + +
Sbjct: 109 DEERVGVSLIEIVK 122
>gi|283784011|ref|YP_003363876.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
gi|282947465|emb|CBG87012.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
Length = 123
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 27/73 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++ V + ++ + L D++ + VI + N + E+ V +
Sbjct: 45 LKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNE 104
Query: 295 NYTIRITDRINFD 307
Y +R+ + +
Sbjct: 105 KYGLRVLEFNTQE 117
>gi|331671783|ref|ZP_08372579.1| flagellar switch protein [Escherichia coli TA280]
gi|331070772|gb|EGI42131.1| flagellar switch protein [Escherichia coli TA280]
Length = 127
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116
>gi|323171042|gb|EFZ56691.1| surface presentation of antigens family protein [Escherichia coli
LT-68]
Length = 123
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 42 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 101
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 102 VNEKYGLRVLE 112
>gi|225850265|ref|YP_002730499.1| flagellar motor switch phosphatase FliY [Persephonella marina
EX-H1]
gi|225646313|gb|ACO04499.1| flagellar motor switch phosphatase FliY [Persephonella marina
EX-H1]
Length = 79
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + + K +++TLK G +I + L + EL +
Sbjct: 10 LKDVTVKVTGEVGRVKKLFIEIITLKEGDIIKLDKHIEDYVELYVKDQLFAVGELIVANE 69
Query: 295 NYTIRITD 302
Y IR+ D
Sbjct: 70 KYGIRVVD 77
>gi|83646013|ref|YP_434448.1| flagellar motor switch/type III secretory pathway protein [Hahella
chejuensis KCTC 2396]
gi|83634056|gb|ABC30023.1| Flagellar motor switch/type III secretory pathway protein [Hahella
chejuensis KCTC 2396]
Length = 397
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 25/68 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ L V + + + TL + +L GQ I L + I EL +VG
Sbjct: 300 LHDLPVEVVFEVARRTATLTQIQSLAPGQTIALDKPLSGAVTLLVQSQAIAEAELVQVGD 359
Query: 295 NYTIRITD 302
RIT
Sbjct: 360 QIGARITR 367
>gi|260429524|ref|ZP_05783501.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
gi|260420147|gb|EEX13400.1| flagellar motor switch protein FliN [Citreicella sp. SE45]
Length = 95
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ + I + + ++D++ L G V+ R + L + I L G
Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGEGSVLTLDKRLEDPVELYVGDRLIGIGALEVLEGGEN 78
Query: 294 KNYTIRITDRIN 305
+R+T+ ++
Sbjct: 79 GQLAVRLTEVVD 90
>gi|291532052|emb|CBK97637.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
siraeum 70/3]
Length = 400
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
PQ + ++ + + + + I I K +KD++
Sbjct: 312 PQPAVNYRNAQLAQFESFEAPLGSEQKENLQ-LLMDVPLQISVEIGSTKKKIKDILEFSQ 370
Query: 262 GQVIPFLHREKTCAILSANGKEIYSCEL 289
G +I + + NG I ++
Sbjct: 371 GTIIELERQAGAPVDVMVNGNLIARGDV 398
>gi|332162917|ref|YP_004299494.1| flagellar switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325667147|gb|ADZ43791.1| Flagellar switch protein [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862338|emb|CBX72498.1| flagellar motor switch protein fliN [Yersinia enterocolitica
W22703]
Length = 129
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 24/65 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ V + + L +++++ VI + NG E+ V +
Sbjct: 52 SRIPVTLTLEVASVDIPLSELMSVNNDSVIELDKLAGEPLDIKINGIMFGQAEVVVVNEK 111
Query: 296 YTIRI 300
Y +RI
Sbjct: 112 YGLRI 116
>gi|293403338|ref|ZP_06647429.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
gi|298378949|ref|ZP_06988830.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
gi|331640695|ref|ZP_08341842.1| flagellar switch protein [Escherichia coli H736]
gi|331645398|ref|ZP_08346502.1| flagellar switch protein [Escherichia coli M605]
gi|331666528|ref|ZP_08367402.1| flagellar switch protein [Escherichia coli TA271]
gi|332281372|ref|ZP_08393785.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|291429191|gb|EFF02211.1| lateral flagellar motor switch protein [Escherichia coli FVEC1412]
gi|298280062|gb|EFI21566.1| lateral flagellar motor switch protein [Escherichia coli FVEC1302]
gi|331040069|gb|EGI12277.1| flagellar switch protein [Escherichia coli H736]
gi|331045560|gb|EGI17686.1| flagellar switch protein [Escherichia coli M605]
gi|331065752|gb|EGI37636.1| flagellar switch protein [Escherichia coli TA271]
gi|332103724|gb|EGJ07070.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 127
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116
>gi|145284339|gb|ABP51920.1| AscQ [Aeromonas veronii bv. sobria]
Length = 308
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ QL + + + + + +L+ G +I + +NG + L +
Sbjct: 232 TELEQLPIQVSFEVGRQTLDWHTLTSLQPGALIDLDTPLDGEVRIISNGHSLGVGRLVEI 291
Query: 293 GKNYTIRITDRINFDQ 308
+R+ N Q
Sbjct: 292 QGRLGVRVERLDNESQ 307
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289
+ + + T+ ++ TL IG V+ P + ++ G+ C+
Sbjct: 158 PLTLSLQWGEMGLTMDELATLAIGDVLLPPPHPQLGQQLLICVEGRPFAYCQP 210
>gi|116626496|ref|YP_828652.1| surface presentation of antigens (SPOA) protein [Candidatus
Solibacter usitatus Ellin6076]
gi|116229658|gb|ABJ88367.1| surface presentation of antigens (SPOA) protein [Candidatus
Solibacter usitatus Ellin6076]
Length = 82
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V+I+ ++ + T +DV+ L+ G VI + G S E+ +
Sbjct: 10 LGDVPVDIEVELDRRIMTTRDVLQLEEGCVIGTSRSAGENIDIYIGGVLCGSGEIVVIEN 69
Query: 295 NYTIRITD 302
+RITD
Sbjct: 70 TLGVRITD 77
>gi|293408349|ref|ZP_06652188.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471527|gb|EFF14010.1| conserved hypothetical protein [Escherichia coli B354]
Length = 127
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 26/71 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
++ V + ++ + L D++ + VI + N + E+
Sbjct: 46 MTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVV 105
Query: 292 VGKNYTIRITD 302
V + Y +R+ +
Sbjct: 106 VNEKYGLRVLE 116
>gi|157147124|ref|YP_001454443.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
gi|157084329|gb|ABV14007.1| hypothetical protein CKO_02901 [Citrobacter koseri ATCC BAA-895]
Length = 132
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 25/67 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ V + + +L +++++ V+ + NG E+ +
Sbjct: 55 SRIPVTLTLEVASVNISLAELMSVNSDSVVELDKMAGEPLDIKVNGILFGKAEVVVLNDK 114
Query: 296 YTIRITD 302
Y +RI +
Sbjct: 115 YGLRIIE 121
>gi|331671784|ref|ZP_08372580.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli TA280]
gi|331070773|gb|EGI42132.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli TA280]
Length = 283
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + SSF +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPTLIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|56695120|ref|YP_165467.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
gi|56676857|gb|AAV93523.1| flagellar motor switch protein FliN [Ruegeria pomeroyi DSS-3]
Length = 109
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + + + I + + ++D++ L V+ R +
Sbjct: 10 PKRYRDMSDPQKPIEAKNPFNSVPIEITVSVGRARPLIRDLIGLGENAVLTLDKRVEDPV 69
Query: 276 ILSANGKEIYSCEL----GRVGKNYTIRITDR 303
L + + +L G +R+T+
Sbjct: 70 DLYVGDRLVARGQLEELTGEQAGQLAVRLTEI 101
>gi|323191518|gb|EFZ76779.1| lateral flagellar export/assembly protein [Escherichia coli
RN587/1]
Length = 283
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 66/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + SSF +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + + + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSMPLTLNVKIAELSLNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|293408350|ref|ZP_06652189.1| predicted protein [Escherichia coli B354]
gi|291471528|gb|EFF14011.1| predicted protein [Escherichia coli B354]
Length = 283
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKDHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + SSF +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|114764046|ref|ZP_01443285.1| flagellar motor switch protein FliN [Pelagibaca bermudensis
HTCC2601]
gi|114543404|gb|EAU46419.1| flagellar motor switch protein FliN [Roseovarius sp. HTCC2601]
Length = 95
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ + I + + ++D++ L G V+ R + L + I L G
Sbjct: 19 VPIEITVSVGRARPLVRDLLKLGAGSVLTLDKRLEDPVELYVGDRLIGIGALEVVDGGEN 78
Query: 294 KNYTIRITDRIN 305
+R+T+ ++
Sbjct: 79 GQLAVRLTEVVD 90
>gi|167574618|ref|ZP_02367492.1| hypothetical protein BoklC_32595 [Burkholderia oklahomensis C6786]
Length = 324
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 48/169 (28%), Gaps = 12/169 (7%)
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E++ A++ + V C P D + + ++
Sbjct: 161 TERRFARKVATNLVRVTAHC------IDPAATRADDAPIPRAAAHSRHPVLFVACDVEDA 214
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ + + + + Q + + A + + ++ +
Sbjct: 215 LRRTVGEIQFALDEGWQQRLFAGLTAGQRRGAPARKQ-PRLLAGALR---IRLTAQLMER 270
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ D++ LK G V+P A + A ++YS + +
Sbjct: 271 RIPFGDLLHLKPGSVLPVRLHAN--ARVLAGDSQLYSASIVEHNGKLCL 317
>gi|261341514|ref|ZP_05969372.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
gi|288316312|gb|EFC55250.1| flagellar switch protein [Enterobacter cancerogenus ATCC 35316]
Length = 133
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 27/72 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ V + + + +L +++T+ VI + NG E +
Sbjct: 56 SRIPVTLTLEVASVEVSLAELMTVGHDSVIELDKMAGEPLDIKVNGILFGKAEAVVLNDK 115
Query: 296 YTIRITDRINFD 307
Y +RI + + +
Sbjct: 116 YGLRILEFNSKE 127
>gi|229155335|ref|ZP_04283445.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
gi|228628050|gb|EEK84767.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 4342]
Length = 119
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|319790414|ref|YP_004152047.1| surface presentation of antigens (SPOA) protein [Thermovibrio
ammonificans HB-1]
gi|317114916|gb|ADU97406.1| surface presentation of antigens (SPOA) protein [Thermovibrio
ammonificans HB-1]
Length = 83
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
++L + + + + I + K V+ LK G +I + ++ N
Sbjct: 2 EVEKELTEKL-ERFSDIELKISLVVGRKVMPFSKVLKLKEGDIITLDKKLDDYLEVTLND 60
Query: 282 KEIYSCELGRVGKNYTIRITDRI 304
+E EL + ++R+ D +
Sbjct: 61 QEFGIGELIVINDKVSLRLVDLV 83
>gi|251789494|ref|YP_003004215.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
Ech1591]
gi|247538115|gb|ACT06736.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya zeae
Ech1591]
Length = 387
Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 27/71 (38%)
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + R TL+D+ L G V+ A L + + EL V ++
Sbjct: 311 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 370
Query: 300 ITDRINFDQKS 310
IT R+ D +
Sbjct: 371 ITRRLGVDGEI 381
>gi|301646793|ref|ZP_07246647.1| surface presentation of antigens protein [Escherichia coli MS
146-1]
gi|301075028|gb|EFK89834.1| surface presentation of antigens protein [Escherichia coli MS
146-1]
Length = 283
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAYTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|307136840|ref|ZP_07496196.1| surface presentation of antigens (SPOA) protein [Escherichia coli
H736]
gi|331640696|ref|ZP_08341843.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli H736]
gi|331040070|gb|EGI12278.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli H736]
Length = 283
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|170021377|ref|YP_001726331.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|188494740|ref|ZP_03002010.1| lateral flagellar export/assembly protein [Escherichia coli 53638]
gi|169756305|gb|ACA79004.1| surface presentation of antigens (SPOA) protein [Escherichia coli
ATCC 8739]
gi|188489939|gb|EDU65042.1| lateral flagellar export/assembly protein [Escherichia coli 53638]
Length = 283
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|42780857|ref|NP_978104.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|196039079|ref|ZP_03106386.1| putative flagellar motor switch protein FliN [Bacillus cereus
NVH0597-99]
gi|206974765|ref|ZP_03235680.1| putative flagellar motor switch protein FliN [Bacillus cereus
H3081.97]
gi|217959247|ref|YP_002337795.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|222095387|ref|YP_002529447.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|229138464|ref|ZP_04267053.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
gi|229195976|ref|ZP_04322729.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
gi|42736777|gb|AAS40712.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
gi|196030224|gb|EDX68824.1| putative flagellar motor switch protein FliN [Bacillus cereus
NVH0597-99]
gi|206746784|gb|EDZ58176.1| putative flagellar motor switch protein FliN [Bacillus cereus
H3081.97]
gi|217067606|gb|ACJ81856.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH187]
gi|221239445|gb|ACM12155.1| flagellar motor switch protein FliN [Bacillus cereus Q1]
gi|228587535|gb|EEK45600.1| Flagellar motor switch protein FliN [Bacillus cereus m1293]
gi|228645001|gb|EEL01244.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST26]
Length = 119
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|324325782|gb|ADY21042.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 119
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99
>gi|323975947|gb|EGB71041.1| lfiM protein [Escherichia coli TW10509]
Length = 283
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESRFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQVKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|254973889|ref|ZP_05270361.1| flagellar motor switch protein [Clostridium difficile QCD-66c26]
gi|255091274|ref|ZP_05320752.1| flagellar motor switch protein [Clostridium difficile CIP 107932]
gi|255305249|ref|ZP_05349421.1| flagellar motor switch protein [Clostridium difficile ATCC 43255]
gi|255312933|ref|ZP_05354516.1| flagellar motor switch protein [Clostridium difficile QCD-76w55]
gi|255515692|ref|ZP_05383368.1| flagellar motor switch protein [Clostridium difficile QCD-97b34]
gi|255648786|ref|ZP_05395688.1| flagellar motor switch protein [Clostridium difficile QCD-37x79]
gi|260682006|ref|YP_003213291.1| flagellar motor switch protein [Clostridium difficile CD196]
gi|260685604|ref|YP_003216737.1| flagellar motor switch protein [Clostridium difficile R20291]
gi|306518903|ref|ZP_07405250.1| flagellar motor switch protein [Clostridium difficile QCD-32g58]
gi|260208169|emb|CBA60487.1| flagellar motor switch protein [Clostridium difficile CD196]
gi|260211620|emb|CBE01855.1| flagellar motor switch protein [Clostridium difficile R20291]
Length = 104
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + VN+ I T+K+++ LK G +I + AN + E
Sbjct: 27 NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESII 86
Query: 292 VGKNYTIRITDRINFD 307
+ ++R++ + D
Sbjct: 87 TNEKLSVRLSKIEDSD 102
>gi|255099392|ref|ZP_05328369.1| flagellar motor switch protein [Clostridium difficile QCD-63q42]
Length = 104
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + VN+ I T+K+++ LK G +I + AN + E
Sbjct: 27 NQNVFNAKVNVAVSIGNTTETIKNILDLKEGSIIKLSKNVDEKLDIYANDRLFAYGESII 86
Query: 292 VGKNYTIRITDRINFD 307
+ ++R++ + D
Sbjct: 87 TNERLSVRLSKIEDPD 102
>gi|110632471|ref|YP_672679.1| surface presentation of antigens (SPOA) protein [Mesorhizobium sp.
BNC1]
gi|110283455|gb|ABG61514.1| surface presentation of antigens (SPOA) protein [Chelativorans sp.
BNC1]
Length = 354
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 222 NQSEDLID----------PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
D + P A L V +D + ++ TL+++ L G +
Sbjct: 254 EIDSDWSEFGAGAIYDEPPLADPIEDLPVRLDFLFSTQRITLEELRALGPGATLRLNVDL 313
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ANG L ++G + ++++
Sbjct: 314 TRPVTILANGAPAGRGYLVQIGDHMGVQLSH 344
>gi|34498061|ref|NP_902276.1| translocation protein in type III secretion [Chromobacterium
violaceum ATCC 12472]
gi|34103916|gb|AAQ60276.1| translocation protein in type III secretion [Chromobacterium
violaceum ATCC 12472]
Length = 290
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/163 (9%), Positives = 47/163 (28%), Gaps = 5/163 (3%)
Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-----NVASSFVL 199
+++ + + + ++ + + + + ++ N L
Sbjct: 126 EMDETETAITAGVSLIAGWSMVEMASVRKLVVGDALLLRYSFDVAAGKFGLFNRQPIASL 185
Query: 200 IIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
+ ET + T +S + + L + + + + + L + L
Sbjct: 186 MQDGETGIFTVETLMSDFEDWMDITPTLSPAEEQALGDAMITVTVEVAKMELPLHQLGNL 245
Query: 260 KIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ G ++ L A + I L + +RI
Sbjct: 246 QPGTLLSSAVSSDGLVTLKAGSRPIARGTLLDIDSRLAVRIEH 288
>gi|307131229|ref|YP_003883245.1| HrcQ [Dickeya dadantii 3937]
gi|306528758|gb|ADM98688.1| HrcQ [Dickeya dadantii 3937]
Length = 382
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 26/71 (36%)
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + R TL+D+ L G V+ A L + + EL V ++
Sbjct: 306 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEGRLGLQ 365
Query: 300 ITDRINFDQKS 310
IT R+ D
Sbjct: 366 ITRRLGVDGDI 376
>gi|256020211|ref|ZP_05434076.1| surface presentation of antigens (SPOA) protein [Shigella sp. D9]
gi|260853450|ref|YP_003227341.1| putative lateral flagellar export/assembly protein [Escherichia
coli O26:H11 str. 11368]
gi|260866396|ref|YP_003232798.1| putative lateral flagellar export/assembly protein [Escherichia
coli O111:H- str. 11128]
gi|300817289|ref|ZP_07097507.1| surface presentation of antigens protein [Escherichia coli MS
107-1]
gi|307315214|ref|ZP_07594793.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|331666529|ref|ZP_08367403.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli TA271]
gi|332281373|ref|ZP_08393786.1| lateral flagellar export/assembly protein [Shigella sp. D9]
gi|257752099|dbj|BAI23601.1| predicted lateral flagellar export/assembly protein [Escherichia
coli O26:H11 str. 11368]
gi|257762752|dbj|BAI34247.1| predicted lateral flagellar export/assembly protein [Escherichia
coli O111:H- str. 11128]
gi|300530265|gb|EFK51327.1| surface presentation of antigens protein [Escherichia coli MS
107-1]
gi|306905395|gb|EFN35932.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|315059471|gb|ADT73798.1| Lateral flagellar C-ring switch protein [Escherichia coli W]
gi|323158011|gb|EFZ44112.1| lateral flagellar export/assembly protein [Escherichia coli
EPECa14]
gi|323178512|gb|EFZ64090.1| lateral flagellar export/assembly protein [Escherichia coli 1180]
gi|323181529|gb|EFZ66949.1| lateral flagellar export/assembly protein [Escherichia coli 1357]
gi|323379971|gb|ADX52239.1| surface presentation of antigens (SPOA) protein [Escherichia coli
KO11]
gi|331065753|gb|EGI37637.1| putative surface presentation of antigens (SPOA) protein
[Escherichia coli TA271]
gi|332103725|gb|EGJ07071.1| lateral flagellar export/assembly protein [Shigella sp. D9]
Length = 283
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|188997537|ref|YP_001931788.1| surface presentation of antigens (SPOA) protein
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932604|gb|ACD67234.1| surface presentation of antigens (SPOA) protein
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 87
Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+K E +N+ I + K + ++ LK G +I +
Sbjct: 1 MHKDMEVDEIYKK--ISLIKNINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVN 58
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ +++ EL V + Y +R+ D I
Sbjct: 59 IYFLNEKVGFGELVNVNEKYGVRLVDLIK 87
>gi|167576642|ref|ZP_02369516.1| hypothetical protein BthaT_00820 [Burkholderia thailandensis TXDOH]
Length = 297
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/182 (10%), Positives = 52/182 (28%), Gaps = 13/182 (7%)
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
ET +T E++LA+R +++ + + I P +
Sbjct: 122 ETAAHAPPIPETTTERRLAERLAGELARTVARAI-------PFDARPDGETPPPDGGHAR 174
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
+ + + SS +++ +
Sbjct: 175 RTHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 230
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+L + + ++ DV+ L+ G V+P A + + ++++ +
Sbjct: 231 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 288
Query: 297 TI 298
+
Sbjct: 289 CL 290
>gi|49480933|ref|YP_035883.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143689|ref|YP_083134.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|218902878|ref|YP_002450712.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH820]
gi|228914342|ref|ZP_04077957.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926800|ref|ZP_04089868.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933048|ref|ZP_04095911.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945367|ref|ZP_04107722.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229121316|ref|ZP_04250547.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
gi|49332489|gb|AAT63135.1| flagellar motor switch protein FliN [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977158|gb|AAU18708.1| flagellar motor switch protein N [Bacillus cereus E33L]
gi|218538442|gb|ACK90840.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH820]
gi|228662161|gb|EEL17770.1| Flagellar motor switch protein FliN [Bacillus cereus 95/8201]
gi|228814339|gb|EEM60605.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228826649|gb|EEM72420.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832913|gb|EEM78482.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845336|gb|EEM90372.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 119
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|196033597|ref|ZP_03101009.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
gi|195994031|gb|EDX57987.1| putative flagellar motor switch protein FliN [Bacillus cereus W]
Length = 119
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 34/95 (35%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 5 VSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVE 64
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 65 KNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|108763665|ref|YP_633788.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
gi|108467545|gb|ABF92730.1| type III secretion system apparatus protein YscQ/HrcQ [Myxococcus
xanthus DK 1622]
Length = 416
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 32/99 (32%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+L + + +++ L V+++ + L ++ LK G ++P
Sbjct: 318 EGFSLTRAQGRGIPQESDMVVVNKQEEGMPPLPVDVEIELTRVMIPLSELAALKPGALLP 377
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRIN 305
+L + + EL + R+ +
Sbjct: 378 LHINASEPVVLRVGDRAVARAELVEIEGEVGARVLALLP 416
>gi|27380367|ref|NP_771896.1| hypothetical protein bsl5256 [Bradyrhizobium japonicum USDA 110]
gi|27353531|dbj|BAC50521.1| bsl5256 [Bradyrhizobium japonicum USDA 110]
Length = 80
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 9/72 (12%), Positives = 23/72 (31%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++ V++ + + V+ L G +I E + AN + S +
Sbjct: 4 LDKVTVDLMVVLGTTTMPIHQVLRLSRGAIIELDATEADEVKVLANNLPVASGVVLVDRN 63
Query: 295 NYTIRITDRINF 306
+ + +
Sbjct: 64 RIAVEVKQMLPR 75
>gi|114765261|ref|ZP_01444393.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Pelagibaca bermudensis
HTCC2601]
gi|114542396|gb|EAU45424.1| Flagellar motor switch FliN protein:Surface presentation of
antigens (SPOA) protein [Roseovarius sp. HTCC2601]
Length = 114
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 6/74 (8%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +N+ + + + ++ L G +I + N + + +L ++
Sbjct: 35 DAMLNVGLNVQIVLGQTRMPIAQLLKLSRGSIIELDKSIGQPVEVVINDRLVARGDLVKL 94
Query: 293 -GKNYTIRITDRIN 305
+ + + +
Sbjct: 95 EDDRLGVSLIEIVK 108
>gi|306813323|ref|ZP_07447516.1| Lateral flagellar export/assembly protein Flagellar motor switch
C-ring (FliM-like) [Escherichia coli NC101]
gi|305854086|gb|EFM54525.1| Lateral flagellar export/assembly protein Flagellar motor switch
C-ring (FliM-like) [Escherichia coli NC101]
Length = 283
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKSHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + SSF +++ +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESSFRILLDDAHTDFILN 183
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 184 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLAQIKAGDILPIS 243
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 244 LGETFPVAI--GQSELFSALIVEDKDKL 269
>gi|283834475|ref|ZP_06354216.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
gi|291070022|gb|EFE08131.1| flagellar motor switch protein FliN [Citrobacter youngae ATCC
29220]
Length = 123
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 202 PQETLLKTTLISLSSQNK-SENQSEDLIDPFARK-------TYQLNVNIDTRINLKKTTL 253
P++ L + ++ + + + +E L+ + ++ V + ++ + L
Sbjct: 4 PEDILEQGFELAPEATTPPAPSVTETLVARLEDRFSESMSLLKRIPVTLTLEVSSVEVML 63
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
D++ + VI + N + E+ V + Y +R+ +
Sbjct: 64 ADLLNIDDDTVIEMDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLE 112
>gi|167567194|ref|ZP_02360110.1| hypothetical protein BoklE_31835 [Burkholderia oklahomensis EO147]
Length = 341
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 49/169 (28%), Gaps = 12/169 (7%)
Query: 130 VEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMT 189
E++ A++ + V C P D + + ++
Sbjct: 178 TERRFARKIATNLVRVTTHC------IDPAAMRADDAPIPRAAAHSRHPVLFVACDVEDA 231
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ + + + + Q + + P A + + ++ +
Sbjct: 232 LRRTVGKIQFALDEGWQQRLFAGLTAGQRRGAPARKQ-PRPLAGALR---IRLTAQLMER 287
Query: 250 KTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ D++ LK G V+P A + A ++YS + +
Sbjct: 288 RIPFGDLLHLKPGSVLPVRLHAN--ARVLAGDSQLYSASIVEHNGKLCL 334
>gi|171320710|ref|ZP_02909723.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171094037|gb|EDT39135.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 111
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 32/74 (43%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ V++D + +K+++TL+ G ++ + C + N + + E+ V
Sbjct: 37 DLVGDVIVSLDVHLGSVDLAVKELMTLQSGSLVTLDRQLDDCVDVRLNERTVARAEIVAV 96
Query: 293 GKNYTIRITDRINF 306
+ IRI + +
Sbjct: 97 DDRFGIRIVEIVEE 110
>gi|13475304|ref|NP_106868.1| translocation protein in type III secretion system, hrcQ
[Mesorhizobium loti MAFF303099]
gi|14026055|dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ
[Mesorhizobium loti MAFF303099]
Length = 354
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 27/76 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + L ++ + G + + + ANG+ I ++ R+
Sbjct: 279 EDLDDVEIMLVFECGRWPIPLGELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRI 338
Query: 293 GKNYTIRITDRINFDQ 308
G IR+ R+ +
Sbjct: 339 GDTLGIRLRGRLGCND 354
>gi|15964405|ref|NP_384758.1| flagellar motor switch protein [Sinorhizobium meliloti 1021]
gi|15073582|emb|CAC45224.1| Flagellar motor switch protein [Sinorhizobium meliloti 1021]
Length = 210
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +++ + + + ++ L G I + + NG+ I E+
Sbjct: 131 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 190
Query: 292 VGK---NYTIRITDRINFDQ 308
+ + +++ + +
Sbjct: 191 LEGDVTRFGVKLLEIKGTKK 210
>gi|83646773|ref|YP_435208.1| flagellar motor switch protein FliM-like protein [Hahella
chejuensis KCTC 2396]
gi|83634816|gb|ABC30783.1| flagellar motor switch protein FliM-like protein [Hahella
chejuensis KCTC 2396]
Length = 252
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 23/174 (13%)
Query: 129 TVEKKLAKRTIAQISAVLNQCI--STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
V KL R + Q + L + + E + + + +
Sbjct: 93 DVSHKLVARLVNQALSELAESWGAADPVEMESLAYAQEYASGWIQVSIAWPSASIV---- 148
Query: 187 NMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRI 246
L+ + + K + ++ R +L+ + R+
Sbjct: 149 ------------LLWSPKVVEKHFPAGAEFNRGALKP----LESLLRSCGELSAKLSVRL 192
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIR 299
N + T+ +V +L+ G VI H+ A++ +G + LG +++
Sbjct: 193 NSVELTINEVTSLQAGDVIKLDHKLTEPALVFTQDGALRFRASLGECEGRKSVK 246
>gi|228984849|ref|ZP_04145019.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229090727|ref|ZP_04221960.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
gi|301053302|ref|YP_003791513.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|228692669|gb|EEL46395.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-42]
gi|228774799|gb|EEM23195.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|300375471|gb|ADK04375.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
Length = 119
Score = 55.8 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|126734122|ref|ZP_01749869.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
CCS2]
gi|126716988|gb|EBA13852.1| surface presentation of antigens (SPOA) protein [Roseobacter sp.
CCS2]
Length = 94
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----G 290
+ + + I + + ++D++ L ++P + + + + I EL G
Sbjct: 14 LHNIPIEISVTVGKARPLVRDLLQLSENAILPLDSKIEDPVEIYIGDRLIARGELQEADG 73
Query: 291 RVGKNYTIRITDR 303
+R+T+
Sbjct: 74 AEPGQLAVRLTEV 86
>gi|47565433|ref|ZP_00236474.1| flagellar motor switch protein fliN, putative [Bacillus cereus
G9241]
gi|47557423|gb|EAL15750.1| flagellar motor switch protein fliN, putative [Bacillus cereus
G9241]
Length = 119
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKTSITLGDVKELKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|229172410|ref|ZP_04299969.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
gi|300117312|ref|ZP_07055102.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|228610881|gb|EEK68144.1| Flagellar motor switch protein FliN [Bacillus cereus MM3]
gi|298725147|gb|EFI65799.1| flagellar motor switch protein [Bacillus cereus SJ1]
Length = 119
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|222084856|ref|YP_002543385.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
gi|221722304|gb|ACM25460.1| flagellar motor switch protein [Agrobacterium radiobacter K84]
Length = 179
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ +++ + + + ++ L G +I R ++ NG+ I E+ +
Sbjct: 100 DLIMDIPIDVQIVLGSSRMQVSGLMNLTEGAIIALDKRIGEPVEITVNGRCIGRGEITVL 159
Query: 293 ---GKNYTIRITD 302
+ I++ +
Sbjct: 160 EHDDTRFGIKLIE 172
>gi|229017050|ref|ZP_04173969.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
gi|229023231|ref|ZP_04179741.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
gi|228738025|gb|EEL88511.1| Flagellar motor switch protein FliN [Bacillus cereus AH1272]
gi|228744223|gb|EEL94306.1| Flagellar motor switch protein FliN [Bacillus cereus AH1273]
Length = 119
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGGRNEAEKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSDIKVGIGEATVMDEKFGIIISEI 99
>gi|2916786|emb|CAA11953.1| flagellar C-ring protein [Sinorhizobium meliloti]
Length = 198
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +++ + + + ++ L G I + + NG+ I E+
Sbjct: 119 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 178
Query: 292 VGK---NYTIRITDRINFDQ 308
+ + +++ + +
Sbjct: 179 LEGDVTRFGVKLLEIKGSKK 198
>gi|89111158|dbj|BAE80248.1| HrcQ [Acidovorax avenae subsp. avenae]
Length = 309
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ V + I+ L ++ L G V+P + L +G+ + + L
Sbjct: 223 ADIGGIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 282
Query: 292 VGKNYTIRI 300
+G+N +RI
Sbjct: 283 IGENLGVRI 291
>gi|118477198|ref|YP_894349.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|196044991|ref|ZP_03112224.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB108]
gi|225863622|ref|YP_002749000.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB102]
gi|229183956|ref|ZP_04311171.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
gi|118416423|gb|ABK84842.1| flagellar motor switch protein N [Bacillus thuringiensis str. Al
Hakam]
gi|196023993|gb|EDX62667.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB108]
gi|225786375|gb|ACO26592.1| putative flagellar motor switch protein FliN [Bacillus cereus
03BB102]
gi|228599481|gb|EEK57086.1| Flagellar motor switch protein FliN [Bacillus cereus BGSC 6E1]
Length = 119
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKELKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|255262994|ref|ZP_05342336.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
gi|255105329|gb|EET48003.1| flagellar motor switch protein FliN [Thalassiobium sp. R2A62]
Length = 94
Score = 55.4 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK- 294
+ + + I T+++++ L ++ + + K I EL +
Sbjct: 14 SDVPIEVTISIGRTHPTVRELLDLNENAILVLDKNIQDPVDIFVGDKLIARGELQELEDT 73
Query: 295 ---NYTIRITDRINF 306
+R+T+ I+
Sbjct: 74 NISQLAVRLTEIIDP 88
>gi|260432139|ref|ZP_05786110.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415967|gb|EEX09226.1| flagellar motor switch protein FliN [Silicibacter lacuscaerulensis
ITI-1157]
Length = 95
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ + + + + ++D++ + V+ R + L + + L G
Sbjct: 18 IPIEVTVSVGRARPLIRDLLNMGENAVLTLDKRVEDPVDLYVGDQLVARGLLEEMEGEHA 77
Query: 294 KNYTIRITDR 303
+R+T+
Sbjct: 78 GQLAVRLTEI 87
>gi|227820848|ref|YP_002824818.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
NGR234]
gi|227339847|gb|ACP24065.1| predicted flagellar motor switch protein FliN [Sinorhizobium fredii
NGR234]
Length = 210
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 7/75 (9%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +++ + + + ++ L G I + + NG+ I E+
Sbjct: 131 MDLIMDIPIDVQIVLGTSRMQVSGLMGLTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 190
Query: 292 VGK---NYTIRITDR 303
+ + +++ +
Sbjct: 191 LEGDVTRFGVKLIEI 205
>gi|317051547|ref|YP_004112663.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
gi|316946631|gb|ADU66107.1| flagellar motor switch protein FliN [Desulfurispirillum indicum S5]
Length = 109
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 27/63 (42%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+ N+D + TL++V+ LK G ++ + N + + E+ + N+
Sbjct: 26 DIMFNLDVELGRIAMTLREVLELKEGSIVELKKTAGESVDVMVNQCLLATAEIVVIEDNF 85
Query: 297 TIR 299
IR
Sbjct: 86 AIR 88
>gi|237755392|ref|ZP_04584019.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237692433|gb|EEP61414.1| flagellar motor switch protein FliN/FliY [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 87
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
++ +N+ I + K + ++ LK G +I +
Sbjct: 1 MHEDMEVDGIYKK--ISLIKDINIPIVIELASLKKNFEFLLNLKEGDIIDLEKNIEDFVN 58
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRIN 305
+ + ++ EL V Y R+ D I
Sbjct: 59 IYFSNEKAGFGELVNVNGKYGARLVDLIK 87
>gi|229096249|ref|ZP_04227222.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
gi|228687209|gb|EEL41114.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-29]
Length = 119
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEASKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|39936231|ref|NP_948507.1| hypothetical protein RPA3168 [Rhodopseudomonas palustris CGA009]
gi|192291948|ref|YP_001992553.1| hypothetical protein Rpal_3578 [Rhodopseudomonas palustris TIE-1]
gi|316933600|ref|YP_004108582.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris DX-1]
gi|39650086|emb|CAE28609.1| possible flgaellar switch protein FliN [Rhodopseudomonas palustris
CGA009]
gi|192285697|gb|ACF02078.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris TIE-1]
gi|315601314|gb|ADU43849.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris DX-1]
Length = 80
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 24/76 (31%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V++ + + V+ L G +I E + AN I S +
Sbjct: 4 LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRN 63
Query: 295 NYTIRITDRINFDQKS 310
+ + +
Sbjct: 64 RIAVEVKQMLPRSPDR 79
>gi|310816847|ref|YP_003964811.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
Y25]
gi|308755582|gb|ADO43511.1| Flagellar motor switch protein fliN [Ketogulonicigenium vulgare
Y25]
Length = 98
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ + + + + + ++++++ L+ V+ R + + I EL
Sbjct: 18 ALWNVPIEVTIAVGRSRPSVRELLALEENAVLQLDRRIDDPVEIYIGDRLIARGELQESE 77
Query: 294 ---KNYTIRITDRINFDQKSL 311
+R+T+ + L
Sbjct: 78 DEPGQLAVRLTEVATTPGEHL 98
>gi|307311547|ref|ZP_07591188.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
gi|307318902|ref|ZP_07598333.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
gi|17380371|sp|O54245|FLIN_RHIME RecName: Full=Flagellar motor switch protein FliN
gi|306895316|gb|EFN26071.1| flagellar motor switch protein FliN [Sinorhizobium meliloti AK83]
gi|306899564|gb|EFN30193.1| flagellar motor switch protein FliN [Sinorhizobium meliloti BL225C]
Length = 198
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ +++ + + + ++ L G I + + NG+ I E+
Sbjct: 119 MDLIMDIPIDVQIVLGTSRMQVSGLMALTEGATIALDRKIGEPVEIMVNGRVIGRGEITV 178
Query: 292 VGK---NYTIRITDRINFDQ 308
+ + +++ + +
Sbjct: 179 LEGDVTRFGVKLLEIKGTKK 198
>gi|30261768|ref|NP_844145.1| flagellar motor switch protein [Bacillus anthracis str. Ames]
gi|47527001|ref|YP_018350.1| flagellar motor switch protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184602|ref|YP_027854.1| flagellar motor switch protein [Bacillus anthracis str. Sterne]
gi|65319045|ref|ZP_00392004.1| COG1886: Flagellar motor switch/type III secretory pathway protein
[Bacillus anthracis str. A2012]
gi|165869551|ref|ZP_02214210.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0488]
gi|167633242|ref|ZP_02391567.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0442]
gi|167638867|ref|ZP_02397142.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0193]
gi|170706439|ref|ZP_02896899.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0389]
gi|177650412|ref|ZP_02933379.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0174]
gi|190566442|ref|ZP_03019360.1| putative flagellar motor switch protein FliN [Bacillus anthracis
Tsiankovskii-I]
gi|227815463|ref|YP_002815472.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. CDC 684]
gi|229603959|ref|YP_002866157.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0248]
gi|254683266|ref|ZP_05147127.1| flagellar motor switch protein [Bacillus anthracis str. CNEVA-9066]
gi|254723849|ref|ZP_05185635.1| flagellar motor switch protein [Bacillus anthracis str. A1055]
gi|254734619|ref|ZP_05192331.1| flagellar motor switch protein [Bacillus anthracis str. Western
North America USA6153]
gi|254741028|ref|ZP_05198716.1| flagellar motor switch protein [Bacillus anthracis str. Kruger B]
gi|254755271|ref|ZP_05207305.1| flagellar motor switch protein [Bacillus anthracis str. Vollum]
gi|254759807|ref|ZP_05211831.1| flagellar motor switch protein [Bacillus anthracis str. Australia
94]
gi|30255996|gb|AAP25631.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. Ames]
gi|47502149|gb|AAT30825.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. 'Ames Ancestor']
gi|49178529|gb|AAT53905.1| flagellar motor switch protein FliN, putative [Bacillus anthracis
str. Sterne]
gi|164714991|gb|EDR20509.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0488]
gi|167513331|gb|EDR88702.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0193]
gi|167531280|gb|EDR93958.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0442]
gi|170128537|gb|EDS97404.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0389]
gi|172083556|gb|EDT68616.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0174]
gi|190562577|gb|EDV16544.1| putative flagellar motor switch protein FliN [Bacillus anthracis
Tsiankovskii-I]
gi|227006606|gb|ACP16349.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. CDC 684]
gi|229268367|gb|ACQ50004.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0248]
Length = 119
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|90424838|ref|YP_533208.1| hypothetical protein RPC_3347 [Rhodopseudomonas palustris BisB18]
gi|90106852|gb|ABD88889.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB18]
Length = 80
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 24/76 (31%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V++ + + V+ L G +I E + AN I S +
Sbjct: 4 LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGMVLVDRN 63
Query: 295 NYTIRITDRINFDQKS 310
+ + +
Sbjct: 64 RIAVEVKRMLPRSPDR 79
>gi|170686292|ref|ZP_02877514.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0465]
gi|170669989|gb|EDT20730.1| putative flagellar motor switch protein FliN [Bacillus anthracis
str. A0465]
Length = 119
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMELEDFAGKRNEASKAHIDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|209964576|ref|YP_002297491.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
gi|15077432|gb|AAK83160.1|AF332661_1 lateral flagellum motor switch protein FliNL [Rhodospirillum
centenum]
gi|209958042|gb|ACI98678.1| flagellar motor switch protein FliN [Rhodospirillum centenum SW]
Length = 103
Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
Q + + +L + Y V + + ++D++ L G ++
Sbjct: 7 IDAMFGGQAEPKKADSELPE--ISAIYDTEVEVSVVLGTSTIRVRDLLKLGRGAIVELDR 64
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + + +G+ + E+ V +
Sbjct: 65 KIDDLSDIIVSGRMVGRGEVTIVEDKIAV 93
>gi|46398253|gb|AAS91807.1| AscQ [Aeromonas hydrophila]
Length = 308
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 24/69 (34%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ QL + + + + + +++ G +I + +NG + L +
Sbjct: 232 TELEQLPIQVSFEVGRQTLDWHTLTSMQPGALIDLGTPLDGEVRIISNGHSLGVGRLVEI 291
Query: 293 GKNYTIRIT 301
+RI
Sbjct: 292 QGRLGVRIE 300
Score = 35.8 bits (81), Expect = 8.6, Method: Composition-based stats.
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 245 RINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289
+ T+ ++ L IG V+ P + + G+ C+
Sbjct: 164 QWGEMGLTMDELGALAIGDVLLPPPHPQLGQQLTICVEGRPFAYCQP 210
>gi|85716139|ref|ZP_01047114.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
gi|85696972|gb|EAQ34855.1| flagellar motor switch protein [Nitrobacter sp. Nb-311A]
Length = 80
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 25/76 (32%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V++ + + V+ L G +I E+ + N I S +
Sbjct: 4 LDKVSVDLMVVLGTTSMPVHQVMRLSRGAIIELDATEQDEVKILVNNLPIASGVVMVNRN 63
Query: 295 NYTIRITDRINFDQKS 310
T+ + +
Sbjct: 64 RITVEVKQMLPRAPDR 79
>gi|325519944|gb|EGC99199.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. TJI49]
Length = 134
Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 4/126 (3%)
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
I + + + +P L T + + + + +R
Sbjct: 2 PAVPAWEITGRPSGNRLTVQRIREMP---LEPTRTDTSHTGAPDVSGAAASTGDTSRPLD 58
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVGKN 295
L V++ + L ++ L+ G VI L ANG I + +L VG+
Sbjct: 59 GLAVDLRFELPPTSMPLGELSALQPGAVIELQQGINQSVIHLVANGMLIGTGQLIAVGQK 118
Query: 296 YTIRIT 301
+R+
Sbjct: 119 LGVRVV 124
>gi|218703508|ref|YP_002411027.1| lateral flagellar motor switch C-ring FliM-like protein
[Escherichia coli UMN026]
gi|293403339|ref|ZP_06647430.1| predicted protein [Escherichia coli FVEC1412]
gi|298378950|ref|ZP_06988831.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302]
gi|300898058|ref|ZP_07116427.1| surface presentation of antigens protein [Escherichia coli MS
198-1]
gi|59889764|emb|CAH19119.1| Lateral flagellar export/assembly protein (FliM-like) [Escherichia
coli]
gi|218430605|emb|CAR11471.1| Lateral flagellar export/assembly protein Flagellar motor switch
C-ring (FliM-like) [Escherichia coli UMN026]
gi|284920028|emb|CBG33084.1| lateral flagellar export/assembly protein (FliM-like) [Escherichia
coli 042]
gi|291429192|gb|EFF02212.1| predicted protein [Escherichia coli FVEC1412]
gi|298280063|gb|EFI21567.1| flagellar motor switch protein FliM [Escherichia coli FVEC1302]
gi|300358236|gb|EFJ74106.1| surface presentation of antigens protein [Escherichia coli MS
198-1]
Length = 283
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 16/207 (7%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 76 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET--LLKT 209
+ L+ I + + + + + +S +L+ T +L
Sbjct: 136 SGIALKLKLDSSTVITH-----------WAYQLTFTLADDEESSFRILLDDAHTDFILNL 184
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 185 IRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSLNVADLTQIKAGDILPISL 244
Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 245 GETFPVAI--GQSELFSALIVEDKDKL 269
>gi|91977550|ref|YP_570209.1| hypothetical protein RPD_3082 [Rhodopseudomonas palustris BisB5]
gi|91684006|gb|ABE40308.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisB5]
Length = 80
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 24/76 (31%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+++V++ + + V+ L G +I E + AN I S +
Sbjct: 4 LDKVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPIASGVVLVDRN 63
Query: 295 NYTIRITDRINFDQKS 310
+ + +
Sbjct: 64 RIAVEVKQMLTRSPDR 79
>gi|315616845|gb|EFU97462.1| lateral flagellar export/assembly protein [Escherichia coli 3431]
gi|323171043|gb|EFZ56692.1| lateral flagellar export/assembly protein [Escherichia coli LT-68]
Length = 249
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 18/208 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++ LL N G + L + E +L R I ++ +
Sbjct: 42 GHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQT 101
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQE---TLLK 208
+ L+ I + + + + + S F +++ +L
Sbjct: 102 SGIALKLKLDSSTVITH-----------WAYQLTFTLA-GDEESCFRILLDDAHTDFILN 149
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
S S+ + +S + L + ++ +I + D+ +K G ++P
Sbjct: 150 LIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLTQIKAGDILPIS 209
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNY 296
E + E++S +
Sbjct: 210 LGETFPVAI--GQSELFSALIVEDKDKL 235
>gi|229115204|ref|ZP_04244614.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
gi|228668344|gb|EEL23776.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-3]
Length = 119
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + ++ +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEDFAGKRNEMSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|146278776|ref|YP_001168935.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145557017|gb|ABP71630.1| surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 88
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GR 291
Q+ + I + + +++++ L+ V+ R L + I EL G
Sbjct: 10 SQVPIEITISVGRARPPVRELLKLQRDAVLALDRRVDDPVDLYVGDRLIGRGELTELEGD 69
Query: 292 VGKNYTIRITDRIN 305
+R+T+ N
Sbjct: 70 QAGQLAVRLTEVAN 83
>gi|163939574|ref|YP_001644458.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|229011057|ref|ZP_04168251.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
gi|229166619|ref|ZP_04294371.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
gi|163861771|gb|ABY42830.1| flagellar motor switch protein FliN [Bacillus weihenstephanensis
KBAB4]
gi|228616873|gb|EEK73946.1| Flagellar motor switch protein FliN [Bacillus cereus AH621]
gi|228750229|gb|EEM00061.1| Flagellar motor switch protein FliN [Bacillus mycoides DSM 2048]
Length = 119
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99
>gi|171915735|ref|ZP_02931205.1| type III secretion system protein [Verrucomicrobium spinosum DSM
4136]
Length = 342
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
T L + +P A QL V + + TL+ + +L G
Sbjct: 240 AATWQDKKLTIQQFIMSDPAPTPAATEPLA-LVDQLEVELTFLVGTHAATLEQLRSLAPG 298
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
I + ANG+ I EL +G +RIT+
Sbjct: 299 ACIELPTPASQAVTICANGRAIGKGELLDIGNRIGVRITE 338
>gi|30019809|ref|NP_831440.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|206970895|ref|ZP_03231847.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH1134]
gi|218234143|ref|YP_002366449.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|218896698|ref|YP_002445109.1| putative flagellar motor switch protein FliN [Bacillus cereus
G9842]
gi|228907397|ref|ZP_04071255.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
200]
gi|228920474|ref|ZP_04083819.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228952147|ref|ZP_04114239.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228958045|ref|ZP_04119780.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964748|ref|ZP_04125855.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971758|ref|ZP_04132379.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978367|ref|ZP_04138744.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
gi|229043520|ref|ZP_04191229.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
gi|229069315|ref|ZP_04202605.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
gi|229078946|ref|ZP_04211498.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
gi|229127091|ref|ZP_04256088.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
gi|229144377|ref|ZP_04272782.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
gi|229149969|ref|ZP_04278195.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
gi|229178172|ref|ZP_04305543.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
gi|229189862|ref|ZP_04316872.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
gi|296502365|ref|YP_003664065.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|29895354|gb|AAP08641.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
gi|206734531|gb|EDZ51701.1| putative flagellar motor switch protein FliN [Bacillus cereus
AH1134]
gi|218162100|gb|ACK62092.1| putative flagellar motor switch protein FliN [Bacillus cereus
B4264]
gi|218543513|gb|ACK95907.1| putative flagellar motor switch protein FliN [Bacillus cereus
G9842]
gi|228593536|gb|EEK51345.1| Flagellar motor switch protein FliN [Bacillus cereus ATCC 10876]
gi|228605302|gb|EEK62752.1| Flagellar motor switch protein FliN [Bacillus cereus 172560W]
gi|228633491|gb|EEK90094.1| Flagellar motor switch protein FliN [Bacillus cereus m1550]
gi|228639008|gb|EEK95433.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST24]
gi|228656207|gb|EEL12048.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-Cer4]
gi|228704360|gb|EEL56794.1| Flagellar motor switch protein FliN [Bacillus cereus Rock4-2]
gi|228713802|gb|EEL65687.1| Flagellar motor switch protein FliN [Bacillus cereus F65185]
gi|228725742|gb|EEL76990.1| Flagellar motor switch protein FliN [Bacillus cereus AH676]
gi|228781384|gb|EEM29585.1| Flagellar motor switch protein FliN [Bacillus thuringiensis Bt407]
gi|228787848|gb|EEM35806.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794998|gb|EEM42497.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801562|gb|EEM48444.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807501|gb|EEM54028.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228839104|gb|EEM84400.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228852258|gb|EEM97054.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
200]
gi|296323417|gb|ADH06345.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|326939377|gb|AEA15273.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 119
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|330953281|gb|EGH53541.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 85
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ ++ + TL + + G V+PF + L NG+ I EL +G +R+
Sbjct: 20 TLICQLGSMELTLAQLREMAPGSVLPFTSQAHDEVDLMVNGRRIGRGELVTIGDGLGVRL 79
>gi|86749492|ref|YP_485988.1| hypothetical protein RPB_2372 [Rhodopseudomonas palustris HaA2]
gi|86572520|gb|ABD07077.1| Surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris HaA2]
Length = 80
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/76 (11%), Positives = 23/76 (30%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
++V++ + + V+ L G +I E + AN + S +
Sbjct: 4 LDNVSVDLMVVLGTTSMPIHQVLRLSRGAIIELDATEADEVKILANNMPVASGVVLVDRN 63
Query: 295 NYTIRITDRINFDQKS 310
+ + +
Sbjct: 64 RIAVEVKQMLTRSPDR 79
>gi|326315334|ref|YP_004233006.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
avenae subsp. avenae ATCC 19860]
gi|323372170|gb|ADX44439.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 373
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ V + I+ L ++ L G V+P + L +G+ + + L
Sbjct: 287 ADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 346
Query: 292 VGKNYTIRI 300
+G++ +RI
Sbjct: 347 IGESLGVRI 355
>gi|283836562|ref|ZP_06356303.1| putative surface presentation of antigens protein [Citrobacter
youngae ATCC 29220]
gi|291067491|gb|EFE05600.1| putative surface presentation of antigens protein [Citrobacter
youngae ATCC 29220]
Length = 250
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 13/172 (7%)
Query: 139 IAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFV 198
+ L S S L + ++ + V + ++ +
Sbjct: 84 FTHGWSALASA-SVQPRLSCPLILGWQELTYEQLRTCVPG-AVLILPSHLEFGEKS---- 137
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTT 252
+ L + +++ D + + + + + T
Sbjct: 138 -CWLLAAETRIKLFIEQGKYTVSEIEQNVEDHIVQSHSPLNSLGDVRITLTFEVGCTSLT 196
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
++ +LK+G V+ C L ANG S L +G +RI +
Sbjct: 197 FAELASLKVGDVLTADVLLNNCVKLRANGSVFASGNLLMLGDTPAVRIDKLL 248
>gi|237678818|emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii]
Length = 371
Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 28/77 (36%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
L + + ++ + ++ G V + ANG+ I ++ R
Sbjct: 295 EADIDSLEITLVFECGRWPMSIGTLRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVR 354
Query: 292 VGKNYTIRITDRINFDQ 308
+G+ +R+ R+ +
Sbjct: 355 IGEELAVRLRGRLTVND 371
>gi|222082188|ref|YP_002541553.1| type III secretion apparatus protein, YscQ/HrcQ family
[Agrobacterium radiobacter K84]
gi|221726867|gb|ACM29956.1| type III secretion apparatus protein, YscQ/HrcQ family
[Agrobacterium radiobacter K84]
Length = 336
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ V + I + L ++ ++ G V P ++ + G+ I E+ +
Sbjct: 266 IGDIPVKLVFDIARIELPLSELESIAEGHVFPLDRPKQDAVEIVTQGRIIGRGEIVTLDG 325
Query: 295 NYTIRIT 301
+R+T
Sbjct: 326 LTAVRVT 332
>gi|75763361|ref|ZP_00743099.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228900346|ref|ZP_04064575.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
4222]
gi|228938877|ref|ZP_04101477.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|229109220|ref|ZP_04238819.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
gi|74489152|gb|EAO52630.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228674230|gb|EEL29475.1| Flagellar motor switch protein FliN [Bacillus cereus Rock1-15]
gi|228820726|gb|EEM66751.1| Flagellar motor switch protein FliN [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228859233|gb|EEN03664.1| Flagellar motor switch protein FliN [Bacillus thuringiensis IBL
4222]
Length = 109
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 30/86 (34%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + +++ + ++ TL DV LK+G V+ +
Sbjct: 4 EDFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDV 63
Query: 278 SANGKEIYSCELGRVGKNYTIRITDR 303
+ ++ E + + + I I++
Sbjct: 64 YLSNMKVGIGEAIVMDEKFGIIISEI 89
>gi|291528000|emb|CBK93586.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
rectale M104/1]
Length = 192
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/185 (5%), Positives = 49/185 (26%), Gaps = 3/185 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ I + + + +I+ + K + + +
Sbjct: 5 SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 63
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146
+ N + + ++G + + + ++ + I+ +
Sbjct: 64 TKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 123
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ ++ + L + + + + +T+ + + S + + P
Sbjct: 124 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 183
Query: 206 LLKTT 210
+ +
Sbjct: 184 VKQII 188
>gi|126697799|ref|YP_001086696.1| flagellar motor switch protein [Clostridium difficile 630]
gi|115249236|emb|CAJ67049.1| Flagellar motor switch protein FliN [Clostridium difficile]
Length = 104
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 30/76 (39%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + VN+ I T+K+++ LK G +I + AN + E
Sbjct: 27 NQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFAYGESII 86
Query: 292 VGKNYTIRITDRINFD 307
+ ++R++ + D
Sbjct: 87 TNETLSVRLSKIEDSD 102
>gi|168263750|ref|ZP_02685723.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168822288|ref|ZP_02834288.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205341310|gb|EDZ28074.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347591|gb|EDZ34222.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|320086103|emb|CBY95877.1| Secretion system apparatus protein ssaQ [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 322
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|62180009|ref|YP_216426.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62127642|gb|AAX65345.1| Secretion system apparatus SsaQ [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322714476|gb|EFZ06047.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 322
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 9/122 (7%)
Query: 186 MNMTIENVASSFVLI-----IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNV 240
+ + S VL+ + + L++ L+S + + +
Sbjct: 197 FAIQLPGGIYSRVLLTEDNTMKFDELVQDIETLLASGSPMSKSDGTSSVELEQ----IPQ 252
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ I + + LK G V+P + N + I EL G + +RI
Sbjct: 253 QVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRI 312
Query: 301 TD 302
T
Sbjct: 313 TR 314
>gi|289805113|ref|ZP_06535742.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 275
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 199 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 258
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 259 NEFMVRITR 267
>gi|168463172|ref|ZP_02697103.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|195634559|gb|EDX52911.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
Length = 322
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|255023255|ref|ZP_05295241.1| flagellar motor switch protein FliM [Listeria monocytogenes FSL
J1-208]
Length = 176
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 4/130 (3%)
Query: 29 KTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSH-IIHSFKENF-VFSQA 86
+ ++ + K + +++ + + T F+ I + + +F
Sbjct: 48 AEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCII 107
Query: 87 SLS-SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
L I +I + E L G + + R LS E+ K + +
Sbjct: 108 DLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKL-SERRLLSVFEELTLKSILEKFCEA 166
Query: 146 LNQCISTTQE 155
L +
Sbjct: 167 LKDSFKSVHP 176
>gi|167551613|ref|ZP_02345367.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|168240931|ref|ZP_02665863.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|194448655|ref|YP_002045421.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197264125|ref|ZP_03164199.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|200389410|ref|ZP_03216021.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|224584071|ref|YP_002637869.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|194406959|gb|ACF67178.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197242380|gb|EDY25000.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|199601855|gb|EDZ00401.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205323619|gb|EDZ11458.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205339429|gb|EDZ26193.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|224468598|gb|ACN46428.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 322
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|145301462|ref|YP_001144301.1| type III secretion system protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|38201228|emb|CAD56763.1| ascQ protein [Aeromonas salmonicida subsp. salmonicida]
gi|66947959|emb|CAE83096.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida]
gi|142856344|gb|ABO92553.1| AscQ protein [Aeromonas salmonicida subsp. salmonicida A449]
Length = 308
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 24/70 (34%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ QL + + + + + +L+ G +I + +NG + L +
Sbjct: 232 TELDQLPIQVSFEVGRQTLDWHTLTSLQPGALIDLGTPLDGEVRIISNGHLLGVGRLVEI 291
Query: 293 GKNYTIRITD 302
+R+
Sbjct: 292 QGRLGVRVER 301
Score = 36.5 bits (83), Expect = 5.5, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 245 RINLKKTTLKDVVTLKIGQVI--PFLHREKTCAILSANGKEIYSCEL 289
+ T+ ++ TL IG V+ P + ++ G+ C+
Sbjct: 164 QWGEMGLTMDELATLAIGDVLLPPPDPQLGQQLLICVEGRPFAYCQP 210
>gi|229102363|ref|ZP_04233071.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
gi|228681010|gb|EEL35179.1| Flagellar motor switch protein FliN [Bacillus cereus Rock3-28]
Length = 109
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/86 (12%), Positives = 31/86 (36%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ ++ +++ + ++ TL DV LK+G V+ +
Sbjct: 4 EDFAGKRNEVSKAHIDTVSDISIELGVKLGKSSITLGDVKQLKVGDVLEVEKNLGHKVDV 63
Query: 278 SANGKEIYSCELGRVGKNYTIRITDR 303
+ ++ E + + + I I++
Sbjct: 64 YLSNMKVGIGEAIVMDEKFGIIISEI 89
>gi|205352866|ref|YP_002226667.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857076|ref|YP_002243727.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|205272647|emb|CAR37557.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206708879|emb|CAR33209.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|309243394|gb|ADO51970.1| SsaQ [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|326627938|gb|EGE34281.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 322
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|56413611|ref|YP_150686.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362535|ref|YP_002142172.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127868|gb|AAV77374.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197094012|emb|CAR59508.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 322
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|198245358|ref|YP_002215714.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197939874|gb|ACH77207.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326623461|gb|EGE29806.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 322
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|161614165|ref|YP_001588130.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363529|gb|ABX67297.1| hypothetical protein SPAB_01907 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 322
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|194445909|ref|YP_002040670.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194404572|gb|ACF64794.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
Length = 322
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|115525436|ref|YP_782347.1| hypothetical protein RPE_3435 [Rhodopseudomonas palustris BisA53]
gi|115519383|gb|ABJ07367.1| surface presentation of antigens (SPOA) protein [Rhodopseudomonas
palustris BisA53]
Length = 82
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 24/75 (32%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+++V++ + + V+ L G +I E + AN + S +
Sbjct: 7 DKVSVDLMVVLGTTSMPVHQVLRLSRGAIIELDATEADEVKILANNMPVASGMVLVDRNR 66
Query: 296 YTIRITDRINFDQKS 310
+ + +
Sbjct: 67 IAVEVKRMLPRSPDR 81
>gi|291524573|emb|CBK90160.1| Chemotaxis protein CheC, inhibitor of MCP methylation [Eubacterium
rectale DSM 17629]
Length = 192
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/185 (5%), Positives = 48/185 (25%), Gaps = 3/185 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ I + + + +I+ + K + + +
Sbjct: 5 SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 63
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146
+ N + + ++G + + ++ + I+ +
Sbjct: 64 TKGLDGTNLLIIKLNDALVIANLMMGGDGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 123
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ ++ + L + + + + +T+ + + S + + P
Sbjct: 124 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 183
Query: 206 LLKTT 210
+ +
Sbjct: 184 VKQII 188
>gi|254702551|ref|ZP_05164379.1| Flagellar motor switch FliN protein [Brucella suis bv. 3 str. 686]
gi|261753129|ref|ZP_05996838.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
gi|261742882|gb|EEY30808.1| flagellar motor switch protein FliN [Brucella suis bv. 3 str. 686]
Length = 107
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ V++ + + ++ L G VI + + NG+ I E+
Sbjct: 39 DLIMGIPVDVQVVLGGTTMPVSSLMKLGRGAVITLDKQIGDPVDIVVNGRVIARGEV 95
>gi|16760493|ref|NP_456110.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141747|ref|NP_805089.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213162229|ref|ZP_03347939.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213416629|ref|ZP_03349773.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213647286|ref|ZP_03377339.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213854185|ref|ZP_03382717.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289827207|ref|ZP_06545930.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25511809|pir||AB0697 probable type III secretion protein ssaQ [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502789|emb|CAD01947.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137375|gb|AAO68938.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 322
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|204927926|ref|ZP_03219127.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204323268|gb|EDZ08464.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
Length = 322
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|283784012|ref|YP_003363877.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
gi|282947466|emb|CBG87013.1| lateral flagellar C-ring switch protein [Citrobacter rodentium
ICC168]
Length = 288
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 20/211 (9%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL-STVEKKLAKRTIAQISAVLNQCIS 151
+ +L++TLL N G +L + E +L R I A++ +
Sbjct: 76 GHLAFDIDRSLLLTLLGNFYGLDASLTEINSQDNLPTKTETRLKSRLAMDIGALIFNKNT 135
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQET------ 205
+ + L+ + + + + +L+ T
Sbjct: 136 SGVPLALKLDSS-----------TVQTHWAYQLTFVLGDNEDGGFRILLDDAHTDYILNL 184
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ ++ + + + L + + +I ++ D+ T++ G ++
Sbjct: 185 IRRSEHNQGKPAADKAAVAVEKKKLVKEIIHTLPLKMQVKIAELPLSVADLATIRPGDIL 244
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNY 296
PF + + E+++ +
Sbjct: 245 PFTLPDSFPVSI--GKSELFTALIVEDKDKL 273
>gi|213581368|ref|ZP_03363194.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 244
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 168 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 227
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 228 NEFMVRITR 236
>gi|168239302|ref|ZP_02664360.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194737381|ref|YP_002114431.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194712883|gb|ACF92104.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197288023|gb|EDY27410.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 322
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|89111191|dbj|BAE80280.1| HrcQ [Acidovorax avenae subsp. avenae]
Length = 309
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ V + I+ L ++ L G V+P + L +G+ + + L
Sbjct: 223 ADIGSIRVPVAIEIDTAHIRLDELAALDAGSVVPLAVPARDATVRLVCHGQVVGTGRLVV 282
Query: 292 VGKNYTIRI 300
+G++ +RI
Sbjct: 283 IGESLGVRI 291
>gi|238923825|ref|YP_002937341.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
gi|238875500|gb|ACR75207.1| flagellar motor switch protein [Eubacterium rectale ATCC 33656]
Length = 197
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/185 (5%), Positives = 49/185 (26%), Gaps = 3/185 (1%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
+ I + + + +I+ + K + + +
Sbjct: 10 SRENADIIGEVANICIGNAATTLSMILQKPTNITTPIVEVLKKEDALDH-DDRILIKVPY 68
Query: 88 LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK-LAKRTIAQISAVL 146
+ N + + ++G + + + ++ + I+ +
Sbjct: 69 TKGLDGTNLLIIKLNDALVIANLMMGGNGSNVSDMTLDEITLSAISEAMNQMCGTIATSM 128
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN-VASSFVLIIPQET 205
+ ++ + L + + + + +T+ + + S + + P
Sbjct: 129 SSLLNEPTDIGFPLINSSYQKTFDIPDELCNGTDIVKVTFRLTVGDLIDSDLLQLYPISI 188
Query: 206 LLKTT 210
+ +
Sbjct: 189 VKQII 193
>gi|327478784|gb|AEA82094.1| surface presentation of antigens (SPOA) protein [Pseudomonas
stutzeri DSM 4166]
Length = 279
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/246 (11%), Positives = 73/246 (29%), Gaps = 28/246 (11%)
Query: 44 KFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103
+ + F ++++++ Q + ++++ L
Sbjct: 44 RLIGDYFLRNYRINLELNRIDVQEERGEE-------PDCIYRSAM----GKVGFSIDRAL 92
Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
+ LE G + +ST E+++ R I+ + + I + +
Sbjct: 93 LTEALECYYGGTVIASQDTP--PISTSEQRMRNRLGMDITDIFARSILSGETFGKLDSYR 150
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
D + E+V I SS L + E + + T
Sbjct: 151 NDYEETSW-------EYVAEYEYISHITGSRSSIYLYLDTELVDELTSRLAGPPVPRLPG 203
Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
+ L V +D + + L V+ L++ ++ R + N ++
Sbjct: 204 NPI------DHIKHLPVRLDCVVAAAQMPLAQVLALQLDDILML--RPLDRYEVRINQQK 255
Query: 284 IYSCEL 289
++ +
Sbjct: 256 LFRGTI 261
>gi|27376929|ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
gi|12620525|gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum]
gi|27350071|dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110]
Length = 373
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 27/77 (35%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ + + L + T+ G V + ANG+ I ++ R
Sbjct: 297 EADIDSIEITLVFECGRWPMPLGTLRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVR 356
Query: 292 VGKNYTIRITDRINFDQ 308
+G+ +R+ R+ +
Sbjct: 357 IGEELAVRLRGRLALND 373
>gi|159024056|gb|ABW87284.1| HrcQ [Xanthomonas fuscans subsp. fuscans]
Length = 304
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q+ + A +L + + ++ +L + L+ GQ++
Sbjct: 203 MILEATPTMQHDTFEPDVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259
Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L G+ I L VG++ ++I
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296
>gi|16764768|ref|NP_460383.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167995052|ref|ZP_02576142.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|3024662|sp|P74860|SSAQ_SALTY RecName: Full=Secretion system apparatus protein SsaQ
gi|16419939|gb|AAL20342.1| secretion system apparatus protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205327192|gb|EDZ13956.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261246624|emb|CBG24434.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993307|gb|ACY88192.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157953|emb|CBW17448.1| putative type III secretion protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912403|dbj|BAJ36377.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|323129690|gb|ADX17120.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988305|gb|AEF07288.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 322
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + + + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|126730034|ref|ZP_01745846.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
gi|126709414|gb|EBA08468.1| hypothetical protein SSE37_16688 [Sagittula stellata E-37]
Length = 95
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ + I + + +++++ L G V+ + L K I L G
Sbjct: 19 VPIEITVSVGKARPLVRELLQLNEGSVLALDKQLDDPVELYVGEKLIGIGVLEVVEGDGQ 78
Query: 294 KNYTIRITDRIN 305
+R+T+ ++
Sbjct: 79 GQLAVRLTEVVD 90
>gi|304321126|ref|YP_003854769.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
HTCC2503]
gi|303300028|gb|ADM09627.1| hypothetical protein PB2503_07859 [Parvularcula bermudensis
HTCC2503]
Length = 90
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL--GRV 292
Y + + + + K +LK++ V+P L R L +G+ I + EL G
Sbjct: 13 LYDIELPVSVVVGRMKMSLKELSEWAPDTVVPLLSRADEPVELVVDGQVIATGELCEGDT 72
Query: 293 G-KNYTIRITDRINFDQK 309
G ++ +RI D + +
Sbjct: 73 GPESLALRILDLKEENAE 90
>gi|218663132|ref|ZP_03519062.1| putative flagellar motor switch protein [Rhizobium etli IE4771]
Length = 77
Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 7/76 (9%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK- 294
+ +++ + + + ++ L G I + + NG+ I E+ +
Sbjct: 1 MDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDND 60
Query: 295 --NYTIRITDRINFDQ 308
+ +++ + ++ +
Sbjct: 61 DTRFGVKLIEVLSTKK 76
>gi|322615098|gb|EFY12021.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619939|gb|EFY16812.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622251|gb|EFY19096.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627773|gb|EFY24563.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632882|gb|EFY29626.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636627|gb|EFY33330.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641180|gb|EFY37822.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644885|gb|EFY41418.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650279|gb|EFY46693.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655852|gb|EFY52154.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660178|gb|EFY56417.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665256|gb|EFY61444.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669513|gb|EFY65661.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673439|gb|EFY69541.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677367|gb|EFY73431.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679970|gb|EFY76009.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687442|gb|EFY83414.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194105|gb|EFZ79304.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198586|gb|EFZ83687.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202912|gb|EFZ87947.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208632|gb|EFZ93570.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211168|gb|EFZ96015.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217609|gb|EGA02324.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323218958|gb|EGA03468.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223788|gb|EGA08092.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229411|gb|EGA13534.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232634|gb|EGA16730.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240328|gb|EGA24372.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242683|gb|EGA26704.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245894|gb|EGA29882.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252458|gb|EGA36305.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256477|gb|EGA40210.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260040|gb|EGA43665.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267196|gb|EGA50681.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271480|gb|EGA54901.1| type III secretion system protein SsaQ [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 322
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|134280726|ref|ZP_01767436.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
gi|134247748|gb|EBA47832.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
Length = 310
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)
Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
G + P + + E +R +++A L + ++ P E
Sbjct: 128 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 187
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
++ + + SS +++ + +
Sbjct: 188 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 238
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
P + QL + + ++ DV+ L+ G V+P A + + ++++
Sbjct: 239 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 292
Query: 288 ELGRVGKNYTI 298
+ +
Sbjct: 293 SIAEHNGKLCL 303
>gi|126445346|ref|YP_001061224.1| hypothetical protein BURPS668_A0218 [Burkholderia pseudomallei 668]
gi|126224837|gb|ABN88342.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
Length = 310
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)
Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
G + P + + E +R +++A L + ++ P E
Sbjct: 128 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 187
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
++ + + SS +++ + +
Sbjct: 188 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 238
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
P + QL + + ++ DV+ L+ G V+P A + + ++++
Sbjct: 239 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 292
Query: 288 ELGRVGKNYTI 298
+ +
Sbjct: 293 SIAEHNGKLCL 303
>gi|167743202|ref|ZP_02415976.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 14]
Length = 213
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 135 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 193
Query: 295 NYTIRIT 301
+ +
Sbjct: 194 QLAVEVK 200
>gi|168233613|ref|ZP_02658671.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194468585|ref|ZP_03074569.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197247910|ref|YP_002146624.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|194454949|gb|EDX43788.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197211613|gb|ACH49010.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|205332385|gb|EDZ19149.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 322
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + + + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|229029444|ref|ZP_04185527.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
gi|228731903|gb|EEL82802.1| Flagellar motor switch protein FliN [Bacillus cereus AH1271]
Length = 119
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 36/96 (37%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSITLGDVKELKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|323186822|gb|EFZ72142.1| flagellar motor switch protein fliN domain protein [Escherichia
coli RN587/1]
Length = 102
Score = 53.5 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V + + + T+K+++ L G V+ + N
Sbjct: 55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN 102
>gi|167923337|ref|ZP_02510428.1| type III secretion system protein BsaV [Burkholderia pseudomallei
BCC215]
Length = 335
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 257 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 315
Query: 295 NYTIRIT 301
+ +
Sbjct: 316 QLAVEVK 322
>gi|289806090|ref|ZP_06536719.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 74
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
S ++ ++ D R+ + + L ++ LK G V+P
Sbjct: 3 ENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPA 56
>gi|125657199|gb|ABN48687.1| hypothetical protein Bpse6_01001805 [Burkholderia pseudomallei]
Length = 289
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)
Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
G + P + + E +R +++A L + ++ P E
Sbjct: 107 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 166
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
++ + + SS +++ + +
Sbjct: 167 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 217
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
P + QL + + ++ DV+ L+ G V+P A + + ++++
Sbjct: 218 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 271
Query: 288 ELGRVGKNYTI 298
+ +
Sbjct: 272 SIAEHNGKLCL 282
>gi|1526984|emb|CAA68198.1| secretion system apparatus, SsaQ [Salmonella enterica subsp.
enterica serovar Typhimurium]
Length = 216
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + + + + LK G V+P + N + I EL G
Sbjct: 140 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 199
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 200 NEFMVRITR 208
>gi|134282102|ref|ZP_01768808.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
gi|134246631|gb|EBA46719.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
Length = 331
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 253 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 311
Query: 295 NYTIRIT 301
+ +
Sbjct: 312 QLAVEVK 318
>gi|167725908|ref|ZP_02409144.1| hypothetical protein BpseD_43225 [Burkholderia pseudomallei DM98]
Length = 289
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)
Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
G + P + + E +R +++A L + ++ P E
Sbjct: 107 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 166
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
++ + + SS +++ + +
Sbjct: 167 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 217
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
P + QL + + ++ DV+ L+ G V+P A + + ++++
Sbjct: 218 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 271
Query: 288 ELGRVGKNYTI 298
+ +
Sbjct: 272 SIAEHNGKLCL 282
>gi|167850203|ref|ZP_02475711.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei B7210]
gi|254193901|ref|ZP_04900333.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
gi|169650652|gb|EDS83345.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
Length = 327
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 249 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 307
Query: 295 NYTIRIT 301
+ +
Sbjct: 308 QLAVEVK 314
>gi|76818002|ref|YP_335737.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710b]
gi|254264677|ref|ZP_04955542.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
gi|76582475|gb|ABA51949.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710b]
gi|254215679|gb|EET05064.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
Length = 319
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 299
Query: 295 NYTIRIT 301
+ +
Sbjct: 300 QLAVEVK 306
>gi|238898596|ref|YP_002924277.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466355|gb|ACQ68129.1| type III surface presentation of antigens protein [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 229
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
++NK + + Q+ V + + K T++ + + G+VIP +
Sbjct: 134 AGNENKVHEHHPEDQKKSSSLCAQVPVTLTFILQKNKVTVEKLEKMYEGEVIPLEPSIEE 193
Query: 274 CAILSANGKEIYSCE-LGRVGKNYTIRITDRINFD 307
+ AN I + LG + +T
Sbjct: 194 RIEIRANNVRIARGKLLGMENGALGVELTQLYQSK 228
>gi|170738280|ref|YP_001779540.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
gi|169820468|gb|ACA95050.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
cenocepacia MC0-3]
Length = 364
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELG 290
+L + + I L + L+ G VI L A G+ I EL
Sbjct: 285 QTSLDELELPVSFEIETVTLPLAQLSALRPGYVIELRGTLRDARIRLLAYGQLIGIGELV 344
Query: 291 RVGKNYTIRITDRINFDQ 308
VG+ +R+ D
Sbjct: 345 TVGEQLGVRVIDVFGSHD 362
>gi|83646772|ref|YP_435207.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
gi|83634815|gb|ABC30782.1| flagellar motor switch protein [Hahella chejuensis KCTC 2396]
Length = 111
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFL 268
+ L N+ + DP + V +D + T+ ++ L V+
Sbjct: 16 VEEVILEPMNEGGAGDKLKSDPL-DLVKNVKVTLDVYLGDANLTVAELTALTSESVVKMN 74
Query: 269 HREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L +GK + +L V + I+IT+
Sbjct: 75 KQLNDPIELLLDGKVVARGKLVAVDDVFGIQITET 109
>gi|238913179|ref|ZP_04657016.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 322
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + + + + LK G V+P + N + I EL G
Sbjct: 246 ELEQIPQQVLFEVGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|259418090|ref|ZP_05742009.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
gi|259346996|gb|EEW58810.1| surface presentation of antigens protein [Silicibacter sp.
TrichCH4B]
Length = 98
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ V + + + ++D+V L ++ + + L + + +L G
Sbjct: 21 VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEGDQA 80
Query: 294 KNYTIRITDR 303
+R+T+
Sbjct: 81 GQLAVRLTEI 90
>gi|226195953|ref|ZP_03791539.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
gi|225931846|gb|EEH27847.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
Length = 327
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 249 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 307
Query: 295 NYTIRIT 301
+ +
Sbjct: 308 QLAVEVK 314
>gi|171319017|ref|ZP_02908144.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171095772|gb|EDT40725.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 329
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYS 286
+ +V + + + + TL ++ L+ GQ++ + G +
Sbjct: 247 EQDVTMELEDRHVELSVELAICRLTLGELANLRAGQMLRLAKAADEMSVDIRYRGTRVAR 306
Query: 287 CELGRVGKNYTIRIT 301
L + +RI
Sbjct: 307 GSLVEINGLLGVRID 321
>gi|254182911|ref|ZP_04889504.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
gi|254299706|ref|ZP_04967155.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
gi|157809502|gb|EDO86672.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
gi|184213445|gb|EDU10488.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
Length = 282
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 20/191 (10%)
Query: 113 GASHETIPQLYNRSLSTV----EKKLAKRTIAQISAVLNQCISTTQESS-PNLEDFYDID 167
G + P + + E +R +++A L + ++ P E
Sbjct: 100 GETASAPPTPAETAATHAPPIPETTTERRLAERLAAELARTVARAIPFDAPAGEPPAPSS 159
Query: 168 YLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL 227
++ + + SS +++ + +
Sbjct: 160 GAHLFAI---------CSIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSVKRER 210
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
P + QL + + ++ DV+ L+ G V+P A + + ++++
Sbjct: 211 PSP----STQLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTA 264
Query: 288 ELGRVGKNYTI 298
+ +
Sbjct: 265 SIAEHNGKLCL 275
>gi|53722559|ref|YP_111544.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|126458287|ref|YP_001076113.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|242311185|ref|ZP_04810202.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
gi|254186857|ref|ZP_04893373.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
gi|52212973|emb|CAH39011.1| surface presentation of antigens protein [Burkholderia pseudomallei
K96243]
gi|126232055|gb|ABN95468.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|157934541|gb|EDO90211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
gi|242134424|gb|EES20827.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
Length = 323
Score = 53.1 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 303
Query: 295 NYTIRIT 301
+ +
Sbjct: 304 QLAVEVK 310
>gi|254511535|ref|ZP_05123602.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
gi|221535246|gb|EEE38234.1| Surface presentation of antigens protein [Rhodobacteraceae
bacterium KLH11]
Length = 95
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 10/91 (10%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++++ + +PF + + + + + ++D++ + V+ R +
Sbjct: 1 MSDPQSRNPEKSNPFEA----VPIEVTVSVGRARPLIRDLLNMGENAVLTLDRRIEDPVD 56
Query: 277 LSANGKEIYSCEL----GRVGKNYTIRITDR 303
L + + L G +R+T+
Sbjct: 57 LYVGDQLVARGLLEEMEGDQAGQLAVRLTEI 87
>gi|296162489|ref|ZP_06845280.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. Ch1-1]
gi|295887302|gb|EFG67129.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. Ch1-1]
Length = 323
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSANGKEIYSCELGRVG 293
+ + + ++ ++ L+ G ++ F + L G EL +
Sbjct: 247 IDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTLLCQGIPFARGELIDIE 306
Query: 294 KNYTIRITDRINFD 307
+R+T D
Sbjct: 307 GAMGVRVTRLTQED 320
>gi|167574751|ref|ZP_02367625.1| RhcQ protein [Burkholderia oklahomensis C6786]
Length = 104
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 26/69 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ + +TTL ++ ++ G V+ + A+G I E +G
Sbjct: 32 LDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVTIGYGEFVEIGS 91
Query: 295 NYTIRITDR 303
+ +
Sbjct: 92 RVAVELIRM 100
>gi|126443367|ref|YP_001063162.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
gi|126222858|gb|ABN86363.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
Length = 323
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 303
Query: 295 NYTIRIT 301
+ +
Sbjct: 304 QLAVEVK 310
>gi|229132592|ref|ZP_04261440.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
gi|228650824|gb|EEL06811.1| Flagellar motor switch protein FliN [Bacillus cereus BDRD-ST196]
Length = 119
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ L DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIKLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99
>gi|120609153|ref|YP_968831.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
citrulli AAC00-1]
gi|120587617|gb|ABM31057.1| type III secretion system apparatus protein YscQ/HrcQ [Acidovorax
citrulli AAC00-1]
gi|255047056|gb|AAW81013.2| HrcQ [Acidovorax citrulli]
Length = 352
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ V + I+ + L ++ L G ++P + L +G+ + + L
Sbjct: 267 TDIGGIRVPVAIEIDTARIRLDELAALDAGAIVPLAVAARDATVRLVCHGQVVGTGRLVV 326
Query: 292 VGKNYTIRI 300
+G + +RI
Sbjct: 327 IGDHLGVRI 335
>gi|119385378|ref|YP_916434.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
gi|119375145|gb|ABL70738.1| surface presentation of antigens (SPOA) protein [Paracoccus
denitrificans PD1222]
Length = 85
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG---RV 292
Q+ V I R+ + T+ ++ L+ ++ + K I EL
Sbjct: 11 DQIQVEITIRLGGTQLTVAELSRLRPDDILTLDQDMSDGVEICVGDKVIARGELVSGDET 70
Query: 293 GKNYTIRI 300
+RI
Sbjct: 71 DNRLCVRI 78
>gi|217425190|ref|ZP_03456685.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
gi|217391795|gb|EEC31822.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
Length = 323
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 245 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 303
Query: 295 NYTIRIT 301
+ +
Sbjct: 304 QLAVEVK 310
>gi|167828748|ref|ZP_02460219.1| type III secretion system protein BsaV [Burkholderia pseudomallei
9]
Length = 294
Score = 53.1 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 216 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 274
Query: 295 NYTIRIT 301
+ +
Sbjct: 275 QLAVEVK 281
>gi|299822269|ref|ZP_07054155.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
gi|299815798|gb|EFI83036.1| flagellar motor switch domain protein [Listeria grayi DSM 20601]
Length = 98
Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 34/71 (47%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ + VN+ R+ K+ +KD+ L +G ++ + + + K++ E +
Sbjct: 27 KQVENIGVNLIVRLGKKQMPVKDIARLNVGDILEVEKKPGHKVEIFLDEKKVGIGEAILM 86
Query: 293 GKNYTIRITDR 303
+N+ I I++
Sbjct: 87 DENFGIVISEI 97
>gi|152975178|ref|YP_001374695.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023930|gb|ABS21700.1| surface presentation of antigens (SPOA) protein [Bacillus
cytotoxicus NVH 391-98]
Length = 119
Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+S + + + E +++ + ++ L DV LK+G V+
Sbjct: 9 SLMSLEEYAIQREEQAKAHI-DTVSDISIELGVKLGKASVQLGDVKNLKVGDVLEVEKNL 67
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 68 GHKVDVYLSDIKVGIGEAIVMDEQFGIIISEI 99
>gi|254301455|ref|ZP_04968899.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
gi|157810889|gb|EDO88059.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
Length = 319
Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 299
Query: 295 NYTIRIT 301
+ +
Sbjct: 300 QLAVEVK 306
>gi|271500422|ref|YP_003333447.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
dadantii Ech586]
gi|270343977|gb|ACZ76742.1| type III secretion system apparatus protein YscQ/HrcQ [Dickeya
dadantii Ech586]
Length = 394
Score = 52.7 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIR 299
+ + R TL+D+ L G V+ A L + + EL V ++
Sbjct: 318 LALTVRCGYLTLTLQDLQQLAPGTVLTLQQAIPGEATLYHGEQPLAQGELVNVEGRLGLQ 377
Query: 300 ITD 302
IT
Sbjct: 378 ITR 380
>gi|167915492|ref|ZP_02502583.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 112]
Length = 215
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 137 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 195
Query: 295 NYTIRIT 301
+ +
Sbjct: 196 QLAVEVK 202
>gi|91782702|ref|YP_557908.1| putative type III secretion protein, FliN like [Burkholderia
xenovorans LB400]
gi|91686656|gb|ABE29856.1| Putative type III secretion protein, FliN like protein
[Burkholderia xenovorans LB400]
Length = 323
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 223 QSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILS 278
E + + + + ++ ++ L+ G ++ F + L
Sbjct: 232 TDETQPVEMTSELLPIDSITFAFEAVLGTLSLSVAELAHLREGSIVAFRLPARERKVTLL 291
Query: 279 ANGKEIYSCELGRVGKNYTIRITDRINFD 307
G EL + +R+T D
Sbjct: 292 CQGIPFARGELIDIEGALGVRVTRLTQED 320
>gi|188532667|ref|YP_001906464.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
gi|188027709|emb|CAO95562.1| HrcQ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
Length = 338
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 199 LIIPQETLLKTTL-ISLSSQNKSENQSEDLIDPFA----RKTYQLNVNIDTRINLKKTTL 253
L +P LL I L+S E+ ++ + + R+ L ++++ R TL
Sbjct: 220 LQLPHHFLLNHLENIPLNSAGDDESTNDPQSEYLSGEESRRLASLPLSLEVRCGRTVMTL 279
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ L+ G V+ + A L I EL V +
Sbjct: 280 GELQQLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321
>gi|237510407|ref|ZP_04523122.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
gi|235002612|gb|EEP52036.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
Length = 319
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 241 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 299
Query: 295 NYTIRIT 301
+ +
Sbjct: 300 QLAVEVK 306
>gi|229160726|ref|ZP_04288718.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
gi|228622741|gb|EEK79575.1| Flagellar motor switch protein FliN [Bacillus cereus R309803]
Length = 119
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 37/96 (38%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++++ ++ TL DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFARKRNEAGKAHIDTVSDISIDLGVKLGKSSITLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
>gi|167820376|ref|ZP_02452056.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 91]
Length = 233
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 155 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 213
Query: 295 NYTIRIT 301
+ +
Sbjct: 214 QLAVEVK 220
>gi|83647781|ref|YP_436216.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
2396]
gi|83635824|gb|ABC31791.1| putative type III secretion protein YscQ [Hahella chejuensis KCTC
2396]
Length = 318
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 1/105 (0%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
L L+ ++ + + +D L + ++ + TL ++ + G
Sbjct: 211 LDDHKLVLVTPMTSDTQHTPEPLDA-PSDLGNLELKLEFHLGSLNLTLAELSQMTEGAAF 269
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NG+ + CEL + R+ D +
Sbjct: 270 DLGLSLEAPVAMKVNGQTLARCELVEIDGRLGARVVRLTGGDSEV 314
>gi|328545472|ref|YP_004305581.1| flagellar motor switch protein [polymorphum gilvum SL003B-26A1]
gi|326415213|gb|ADZ72276.1| Probable flagellar motor switch protein [Polymorphum gilvum
SL003B-26A1]
Length = 136
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ VNI + + +++ L G VIP HR + NG+ + E+ V
Sbjct: 53 DTILGIPVNIQVVLGSATMLVANLLKLGRGAVIPLNHRVGEPVDIVVNGRVVARGEVVVV 112
Query: 293 ---GKNYTIRITDRINFDQKSLK 312
+ + +T+ I+ +L
Sbjct: 113 EDDNSRFGVSLTEIISAQSTTLD 135
>gi|229588260|ref|YP_002870379.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
gi|229360126|emb|CAY46983.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
Length = 337
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/264 (10%), Positives = 67/264 (25%), Gaps = 40/264 (15%)
Query: 42 YKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSN 101
Y + L + + +S + + + W
Sbjct: 110 YVRLLETDRTKAFGCRLSVSLGQTRVEGY----VWLSPESFLALCDAGPWRGRAG-PMPA 164
Query: 102 NLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLE 161
+ + + R + + + R + VL Q
Sbjct: 165 SFRLAI------------AVTLGRLQLPIAQARSLRVGDVL--VLEQSF----------- 199
Query: 162 DFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSE 221
+ ++ I++ + L + ++ E
Sbjct: 200 --FLAQGNGYVQVGTH-------RLHGCIDDDSGPLCLTLTSIEETSVDEEFIAPHYAGE 250
Query: 222 NQSEDLIDPFARK-TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
E + D F + +L++ ++ R TL ++ L G V+ A L
Sbjct: 251 EDDEPVTDVFGHEPFDELSMALNVRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYG 310
Query: 281 GKEIYSCELGRVGKNYTIRITDRI 304
+ I +L V ++++ +
Sbjct: 311 DRPIGQGQLVEVDGRLGLQLSRVM 334
>gi|207108700|ref|ZP_03242862.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_CA4C1]
Length = 57
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ IG V+ + + K I E+ V N+ I+ITD I ++ L+ +
Sbjct: 1 MDIGSVVELDQLVNDPLEILVDDKVIAKGEVVIVDGNFGIQITD-IGTKKERLEQLKN 57
>gi|167724227|ref|ZP_02407463.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei DM98]
Length = 182
Score = 52.7 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 104 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 162
Query: 295 NYTIRIT 301
+ +
Sbjct: 163 QLAVEVK 169
>gi|229058413|ref|ZP_04196797.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
gi|228719922|gb|EEL71512.1| Flagellar motor switch protein FliN [Bacillus cereus AH603]
Length = 119
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 35/96 (36%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + +SL + + + +++ + ++ L DV LK+G V+
Sbjct: 4 EVSPVSLMGLEEFAGKRNEAGKAHIDTVSDISIELGVKLGKSSIQLGDVKQLKVGDVLEV 63
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + ++ E + + + I I++
Sbjct: 64 EKNLGHKVDVYLSDMKVGIGEAIVMDEKFGIIISEI 99
>gi|323388135|gb|ADX60331.1| type III secretion protein RscQab [Pseudomonas fluorescens]
Length = 330
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%)
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNID 243
+ I++ + L + +SQ + E ++D F + +LN+ +
Sbjct: 207 RLQGCIDDESGPLCLTLVSIEETSVDEDFATSQYPGDELDEPVVDVFGHEPFDELNMALT 266
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
R TL ++ L G V+ A L + I +L V ++++
Sbjct: 267 VRCGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRV 326
Query: 304 I 304
I
Sbjct: 327 I 327
>gi|99082785|ref|YP_614939.1| surface presentation of antigens (SPOA) protein [Ruegeria sp.
TM1040]
gi|99039065|gb|ABF65677.1| Flagellar motor switch protein fliN [Ruegeria sp. TM1040]
Length = 98
Score = 52.7 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ V + + + ++D+V L ++ + + L + + +L G
Sbjct: 21 VPVEVIVSVGKARPLIRDLVNLGENAILTLDKKVEDPVDLYVGDRLVARGQLEEMEGDQA 80
Query: 294 KNYTIRITDR 303
+R+T+
Sbjct: 81 GQLAVRLTEI 90
>gi|167898810|ref|ZP_02486211.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 7894]
Length = 264
Score = 52.3 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 186 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 244
Query: 295 NYTIRIT 301
+ +
Sbjct: 245 QLAVEVK 251
>gi|53716432|ref|YP_106204.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 23344]
gi|124382042|ref|YP_001025752.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10229]
gi|126447332|ref|YP_001077837.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10247]
gi|254176060|ref|ZP_04882718.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 10399]
gi|254359171|ref|ZP_04975443.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
2002721280]
gi|52422402|gb|AAU45972.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 23344]
gi|126240186|gb|ABO03298.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10247]
gi|148028358|gb|EDK86318.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
2002721280]
gi|160697102|gb|EDP87072.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
ATCC 10399]
gi|261826615|gb|ABM99775.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
NCTC 10229]
Length = 645
Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ Q + + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 546 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 605
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 606 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 642
>gi|315301935|ref|ZP_07872938.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
gi|313629696|gb|EFR97826.1| flagellar motor switch protein [Listeria ivanovii FSL F6-596]
Length = 99
Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 39/98 (39%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + L E E R+ + VN+ R+ ++ + D+ L IG V+
Sbjct: 1 MEQIFQVELPEWEPKETTQESREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + K++ E + +N+ I I++
Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98
>gi|167907138|ref|ZP_02494343.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei NCTC 13177]
Length = 260
Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 182 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGQPFGRGELIQVGE 240
Query: 295 NYTIRIT 301
+ +
Sbjct: 241 QLAVEVK 247
>gi|167615480|ref|ZP_02384115.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis Bt4]
Length = 205
Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ + + ++ ++ ++ L+ G V+ + L A G+ I L
Sbjct: 127 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 186
Query: 292 VGKNYTIRITDRINFD 307
VG + +RI D
Sbjct: 187 VGAHLGVRIDRMAGDD 202
>gi|85060063|ref|YP_455765.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
gi|45504774|gb|AAS66864.1| SpaO [Sodalis glossinidius]
gi|84780583|dbj|BAE75360.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
Length = 338
Score = 52.3 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 9/68 (13%), Positives = 28/68 (41%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + ++ + + +L ++ + G+V+ + + ANG + EL ++
Sbjct: 262 LANLPLTLEFILQRRYLSLGEIQQFRQGKVLELDPEGEKHIEIRANGHLLALGELVQLED 321
Query: 295 NYTIRITD 302
+ + +
Sbjct: 322 RLGVELME 329
>gi|167567223|ref|ZP_02360139.1| RhcQ protein [Burkholderia oklahomensis EO147]
Length = 104
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 26/69 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ +++ + +TTL ++ ++ G V+ + A+G I E +G
Sbjct: 32 LDDIPISLMFVVGRLRTTLGELRSMTPGDVLELGRNPHGQVSIEAHGVMIGYGEFVEIGS 91
Query: 295 NYTIRITDR 303
+ +
Sbjct: 92 RVAVELIRM 100
>gi|149189862|ref|ZP_01868142.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
gi|148836348|gb|EDL53305.1| putative flagellar motor switch protein [Vibrio shilonii AK1]
Length = 270
Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/283 (7%), Positives = 74/283 (26%), Gaps = 38/283 (13%)
Query: 31 IEKISSSLGYLYKKFLPKIFKEKMDLD-VDISYTSCQSGKFSHIIHSFKENFVFSQASLS 89
I L + L + + V + + + + + S S
Sbjct: 25 IRNKLEELLINSCQQLSLELQAWLKTQQVLVELDHV---SLTELPQTNVDVTSVSVLKHS 81
Query: 90 SWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQC 149
++ +++ L + T + L+ + +L +R
Sbjct: 82 D-DGMLYVSMEPTMLMRLSDQFY----STSMERSGGELTNSDLRLLQRIAKCA------- 129
Query: 150 ISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKT 209
S + +++ + + + + + +
Sbjct: 130 -SQWIAPETTWKQHEFEVIPG---------IGIAAKLSIYVRSQQALLAVTLDSALIQTL 179
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ N F ++ V ++ +++ L V+ LK ++P
Sbjct: 180 IDELELTPNPHMASD------FNHALHKTPVRLNVQLSKTVLPLTQVLKLKADDILPIEL 233
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLK 312
+ + +++ + + +N D+++ +
Sbjct: 234 LNNAPVNI--GKETLFTGRVAEQEGQLVL----ILNDDKETNR 270
>gi|217965209|ref|YP_002350887.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|226223324|ref|YP_002757431.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes Clip81459]
gi|255022686|ref|ZP_05294672.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J1-208]
gi|217334479|gb|ACK40273.1| flagellar motor switch protein [Listeria monocytogenes HCC23]
gi|225875786|emb|CAS04489.1| Putative flagellar motor switch protein fliY C-terminal part
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|307570232|emb|CAR83411.1| flagellar motor switch protein, putative [Listeria monocytogenes
L99]
gi|313610127|gb|EFR85446.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-208]
gi|313620062|gb|EFR91575.1| flagellar motor switch protein [Listeria innocua FSL S4-378]
gi|313624708|gb|EFR94663.1| flagellar motor switch protein [Listeria innocua FSL J1-023]
gi|332311118|gb|EGJ24213.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 100
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 39/99 (39%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + L E E R+ + VN+ R+ K+ + D+ L IG V
Sbjct: 1 MMEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDV 60
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + + K++ E + +N+ I I++
Sbjct: 61 LEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 99
>gi|313634370|gb|EFS00965.1| flagellar motor switch protein [Listeria seeligeri FSL N1-067]
gi|313639055|gb|EFS04042.1| flagellar motor switch protein [Listeria seeligeri FSL S4-171]
Length = 99
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 39/98 (39%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + L E E R+ + VN+ R+ ++ + D+ L IG V+
Sbjct: 1 MEQIFQVELPEWEPKETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + K++ E + +N+ I I++
Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98
>gi|218663134|ref|ZP_03519064.1| flagellar C-ring protein [Rhizobium etli IE4771]
Length = 47
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 272 KTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNFLH 316
+ +SAN KE+Y CE GR G+NY +R+ D +N D + +++ ++
Sbjct: 3 EVRVEVSANSKELYICEFGRSGENYMVRVKDTMNSDDELIRHLMN 47
>gi|225871935|ref|YP_002753389.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
gi|225793506|gb|ACO33596.1| putative flagellar protein [Acidobacterium capsulatum ATCC 51196]
Length = 116
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILS 278
++E S L + Q + ++ R+ ++ +KDV+ L+ G +
Sbjct: 31 EAETASLSLRRTIEERVTQAPLRLEIRLPIRGLRVKDVLALRKGAIFETQWPADEDIPGD 90
Query: 279 ANGKEIYSCELGRVGKNYTIRITD 302
G+++ E + K +R+T
Sbjct: 91 CGGQQLVWAEFEVIDKKLAVRVTR 114
>gi|239815264|ref|YP_002944174.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
gi|239801841|gb|ACS18908.1| surface presentation of antigens (SPOA) protein [Variovorax
paradoxus S110]
Length = 322
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 3/110 (2%)
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDL--IDPFARKTYQLNVNIDTRINLKKT 251
+ L +P + ++ + L +P + V + + +
Sbjct: 189 GGVWRLGLPHGAVAAVLASESAAAKPPLRSGDHLLPKEPLDQALADRRVALRVMLKGAEL 248
Query: 252 TLKDVVTLKIGQVIPFLHREKTCAILS-ANGKEIYSCELGRVGKNYTIRI 300
L + L++ V+P H A + A+G + LG+ I +
Sbjct: 249 NLGQLQELRVDDVVPLEHLLDAPAHVVGADGGRVCDGWLGQSDGRMAIEL 298
>gi|294665991|ref|ZP_06731254.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604239|gb|EFF47627.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 304
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q+ + A +L + + ++ +L + L+ GQ++
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259
Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L G+ I L VG++ ++I
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296
>gi|213023716|ref|ZP_03338163.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 140
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 64 ELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACG 123
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 124 NEFMVRITR 132
>gi|5679187|gb|AAD46901.1|AF160974_4 HrcQ homolog [Xanthomonas campestris pv. glycines]
gi|30524903|gb|AAP34348.1|AF499777_16 HrcQ [Xanthomonas axonopodis pv. glycines]
Length = 304
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q+ + A +L + + ++ +L + L+ GQ++
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259
Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L G+ I L VG++ ++I
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296
>gi|238757864|ref|ZP_04619046.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
35236]
gi|238703849|gb|EEP96384.1| Secretion system apparatus protein ssaQ [Yersinia aldovae ATCC
35236]
Length = 269
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 32/83 (38%)
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA 279
E D P A L + + +L + L++G ++P + L
Sbjct: 169 EERDDVDNPPPLAVSIDDLPQILLVEVGQVDISLGALRALRVGDLLPVAAQFGGEVKLRL 228
Query: 280 NGKEIYSCELGRVGKNYTIRITD 302
NG+ + + EL G ++ +RI
Sbjct: 229 NGRVLGAGELVGCGDSFLVRINR 251
>gi|284801023|ref|YP_003412888.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994165|ref|YP_003415933.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|284056585|gb|ADB67526.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059632|gb|ADB70571.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
Length = 100
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 39/99 (39%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + + L E E R+ + VN+ R+ K+ + D+ L IG V
Sbjct: 1 MMEQVFQVELPEWEPKETPQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDV 60
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + + K++ E + +N+ I I++
Sbjct: 61 LEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 99
>gi|167724362|ref|ZP_02407598.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei DM98]
Length = 216
Score = 51.9 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ Q + + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 117 LQAGLQADASPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 176
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 177 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 213
>gi|294625839|ref|ZP_06704455.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599867|gb|EFF43988.1| HrcQ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 304
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q+ + A +L + + ++ +L + L+ GQ++
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259
Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L G+ I L VG++ ++I
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296
>gi|227820524|ref|YP_002824495.1| type III secretion system translocation protein, RhcQ
[Sinorhizobium fredii NGR234]
gi|227339523|gb|ACP23742.1| type III secretion system translocation protein, RhcQ
[Sinorhizobium fredii NGR234]
Length = 351
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
L S + Q L + + I + LK++ + G V+
Sbjct: 256 LKSSWEFSAMSKQQPPSSGEL-EPLADLPIELVFEIGRAEFPLKEIARMGEGTVLHASPS 314
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ + ANG+ + EL R+G+ IR+
Sbjct: 315 LSSPVSILANGRLVGKGELIRIGEGLGIRVVR 346
>gi|46562140|ref|YP_009161.1| type III secretion system protein YopQ family [Desulfovibrio
vulgaris str. Hildenborough]
gi|46447677|gb|AAS94343.1| type III secretion system protein, YopQ family [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235511|gb|ADP88364.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris RCH1]
Length = 484
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/278 (8%), Positives = 58/278 (20%), Gaps = 25/278 (8%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITL 107
+ V + + S + S T
Sbjct: 146 TALATLLGTTVRAEAMETPPAASTDAAPGVASGTSAGHDAPPPGSCAVVLALSVPTGDTK 205
Query: 108 LENLLGASHETIPQLYNRS--------LSTVEKKLAKRTIAQISAVLNQCISTTQE-SSP 158
G + + + V +L ++ L + E +P
Sbjct: 206 GGTAAGGTTPAPDTGGDGDNRDSGSAGHTVVPLRLTLPV--ALATSLAAQLMALPERHTP 263
Query: 159 NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN----VASSFVLII-PQETL------- 206
+ + ++E T ++ + + L+ P
Sbjct: 264 REDIPVTVTIEAGRMRLAAHELATLAVDDVLLPEDYPALRGRIALMTGPHAFACSLTEGR 323
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLKDVVTLKIGQV 264
+ + S+ V+I + + L D+ L G
Sbjct: 324 ATVLDATPAPNTPESPMSDQQTPEVPAGLDTAALEVDIVFELERRTMKLNDLAALAPGYT 383
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L G+ I L + +++
Sbjct: 384 FALGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLH 421
>gi|307944365|ref|ZP_07659706.1| putative surface presentation of antigens (spoa) protein [Roseibium
sp. TrichSKD4]
gi|307772711|gb|EFO31931.1| putative surface presentation of antigens (spoa) protein [Roseibium
sp. TrichSKD4]
Length = 348
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
A K ++ VN+ + + ++ L+ G V+ + L NG++I L
Sbjct: 272 AGKVDEIKVNLVVSAGELQLPIGELRELETGSVLRLPVGQPGNVNLMVNGQKIGEGVLVT 331
Query: 292 VGKNYTIRITD 302
+ + I+
Sbjct: 332 ISGQTAVEISK 342
>gi|171316783|ref|ZP_02905994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MEX-5]
gi|171098041|gb|EDT42857.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MEX-5]
Length = 377
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRV 292
L V ++ I+ + + ++ G VI L+A+ + I EL V
Sbjct: 299 AIGALEVPVNFEIDTVALPIDQLAAMRQGYVIELSRTTSDMQVRLTAHSQVIGHGELVSV 358
Query: 293 GKNYTIRITDRINFDQ 308
G + +RI D
Sbjct: 359 GDHLGVRILQMAQRDD 374
>gi|2196899|gb|AAB61257.1| FliY [Treponema pallidum]
Length = 113
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 2/89 (2%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
P A +G G ++ S + V IS +
Sbjct: 26 PAAGASFSGG-GLSSAQSELLQSFCQANVGSFCPSLESLTGKTVSISPPRVEISSKEEFS 84
Query: 75 HSFKENFVFSQASLS-SWSSNFFIGCSNN 102
+ V + ++ + +
Sbjct: 85 RVIPDMLVATVIDFEGEFAGDHLFLMAPE 113
>gi|83717892|ref|YP_438371.1| hypothetical protein BTH_II0169 [Burkholderia thailandensis E264]
gi|83651717|gb|ABC35781.1| conserved hypothetical protein [Burkholderia thailandensis E264]
Length = 319
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 51/182 (28%), Gaps = 12/182 (6%)
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
T +T E++LA+R +++ + + + + +
Sbjct: 143 ATAAHAPPIPETTTERRLAERLAGELARTVARA------IPFDAPPDDETPPPPDGGHAR 196
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
+ + + SS +++ +
Sbjct: 197 RAHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 252
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+L + + ++ DV+ L+ G V+P A + + ++++ +
Sbjct: 253 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 310
Query: 297 TI 298
+
Sbjct: 311 CL 312
>gi|254994095|ref|ZP_05276285.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J2-064]
Length = 99
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 40/98 (40%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + L E+ E R+ + VN+ R+ K+ + D+ L IG V+
Sbjct: 1 MEQVFQVELPEWEPKESSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVL 60
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + K++ E + +N+ I I++
Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98
>gi|289433971|ref|YP_003463843.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170215|emb|CBH26755.1| flagellar motor switch domain protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 99
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 40/98 (40%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + L +E E R+ + VN+ R+ ++ + D+ L IG V+
Sbjct: 1 MEQIFQVELPEWEPNETTQEGREKGTIRQVENIGVNLIVRLGKREMPVGDIAELSIGDVL 60
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + K++ E + +N+ I I++
Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98
>gi|83716524|ref|YP_438950.1| surface presentation of antigens domain-containing protein
[Burkholderia thailandensis E264]
gi|257142054|ref|ZP_05590316.1| surface presentation of antigens domain-containing protein
[Burkholderia thailandensis E264]
gi|83650349|gb|ABC34413.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis E264]
Length = 423
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ + + ++ ++ ++ L+ G V+ + L A G+ I L
Sbjct: 345 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 404
Query: 292 VGKNYTIRITDRINFD 307
VG + +RI D
Sbjct: 405 VGAHLGVRIDRMAGDD 420
>gi|82470759|gb|ABB77411.1| HrcQ [Pantoea stewartii subsp. stewartii]
Length = 336
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 188 MTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSE-DLIDPFARK----TYQLNVNI 242
+ I L +P ++ + + ++E + A L +++
Sbjct: 209 VNIAGYELVGTLQLPHHFVITHLERTALNPYETEGSDAVSKREHLASDDHFSLAMLPLSL 268
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ R + TL ++ L+ G V+ + A L I EL V
Sbjct: 269 EVRCGRTRLTLGELQHLQPGSVLTLDNMTPGEADLYYGETLIAQGELVDVEG 320
>gi|1648935|gb|AAB17683.1| putative [Sinorhizobium fredii]
gi|19749327|gb|AAL98697.1| Y4yK [Sinorhizobium fredii]
gi|52631920|gb|AAU85370.1| RhcQ [Sinorhizobium fredii]
Length = 382
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 34/101 (33%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
S + ++E + P + + + +L D+ + G V
Sbjct: 282 PFRPQSRPLEYAHMTETESQLRPSDADLDDIEIVLVFECGRWPISLGDLRSAGDGHVFEL 341
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQ 308
+ ANG+ I ++ R+G IR+ R+ +
Sbjct: 342 GRPIDGLVDIVANGRCIGRGDIVRIGDELGIRLRGRLACND 382
>gi|124381914|ref|YP_001025863.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
10229]
gi|126447935|ref|YP_001077948.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
10247]
gi|254359076|ref|ZP_04975348.1| type III secretion system protein BsaV [Burkholderia mallei
2002721280]
gi|126240789|gb|ABO03901.1| type III secretion system protein BsaV [Burkholderia mallei NCTC
10247]
gi|148028263|gb|EDK86223.1| type III secretion system protein BsaV [Burkholderia mallei
2002721280]
gi|261826559|gb|ABN00415.2| type III secretion system protein BsaV [Burkholderia mallei NCTC
10229]
Length = 335
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T++ + +G V+P + ANG+ EL +VG+
Sbjct: 257 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 315
Query: 295 NYTIRIT 301
+ +
Sbjct: 316 QLAVEVK 322
>gi|254469380|ref|ZP_05082785.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
gi|211961215|gb|EEA96410.1| Surface presentation of antigens protein [Pseudovibrio sp. JE062]
Length = 350
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE---KTCAILSANGKEIYSCELGR 291
Q++V + ++ ++ ++ ++ + G ++ +T + A GK I L +
Sbjct: 273 LSQMSVPVRFEVDEREISIAELESWAAGTLVNIDVPALNEETPVYVRAAGKRIAKGHLVQ 332
Query: 292 VGKNYTIRITDR 303
+ + +RI+
Sbjct: 333 IDERVALRISKT 344
>gi|167577332|ref|ZP_02370206.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis TXDOH]
Length = 226
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+ + + ++ ++ ++ L+ G V+ + L A G+ I L
Sbjct: 148 ADLGDVELPVHVELDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQTIGGGRLVA 207
Query: 292 VGKNYTIRITDRINFD 307
VG + +RI D
Sbjct: 208 VGAHLGVRIDRMAGDD 223
>gi|167004217|ref|ZP_02269984.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
gi|243060412|gb|EES42598.1| type III secretion system protein BsaV [Burkholderia mallei PRL-20]
Length = 331
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T++ + +G V+P + ANG+ EL +VG+
Sbjct: 253 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 311
Query: 295 NYTIRIT 301
+ +
Sbjct: 312 QLAVEVK 318
>gi|21241176|ref|NP_640758.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21106483|gb|AAM35294.1| HrcQ protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 304
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ + Q+ + A +L + + ++ +L + L+ GQ++
Sbjct: 203 MILEATPTMQHDTFEPEVAQS---ASNVAELELPVQLEVDQLALSLSTLSGLQPGQILEL 259
Query: 268 LHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L G+ I L VG++ ++I
Sbjct: 260 SVPVDQADIRLVVYGQTIGIGRLVTVGEHLGVQILSM 296
>gi|53716455|ref|YP_106127.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
23344]
gi|67641438|ref|ZP_00440217.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia mallei GB8 horse 4]
gi|254176163|ref|ZP_04882821.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
10399]
gi|254200993|ref|ZP_04907358.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
gi|254204957|ref|ZP_04911310.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
gi|52422425|gb|AAU45995.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
23344]
gi|147748605|gb|EDK55680.1| type III secretion system protein BsaV [Burkholderia mallei FMH]
gi|147754543|gb|EDK61607.1| type III secretion system protein BsaV [Burkholderia mallei JHU]
gi|160697205|gb|EDP87175.1| type III secretion system protein BsaV [Burkholderia mallei ATCC
10399]
gi|238522378|gb|EEP85823.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia mallei GB8 horse 4]
Length = 327
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T++ + +G V+P + ANG+ EL +VG+
Sbjct: 249 IDALPVTLEFVLHDERVTVEQLAGCHLGMVLPLRGAPGE-VTIRANGRPFGRGELIQVGE 307
Query: 295 NYTIRIT 301
+ +
Sbjct: 308 QLAVEVK 314
>gi|238563925|ref|ZP_04610802.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
GB8 horse 4]
gi|238519669|gb|EEP83138.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
GB8 horse 4]
Length = 160
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ Q + + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 61 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 120
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 121 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 157
>gi|167614817|ref|ZP_02383452.1| hypothetical protein BthaB_00940 [Burkholderia thailandensis Bt4]
gi|257141402|ref|ZP_05589664.1| hypothetical protein BthaA_19664 [Burkholderia thailandensis E264]
Length = 298
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 51/182 (28%), Gaps = 12/182 (6%)
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
T +T E++LA+R +++ + + + + +
Sbjct: 122 ATAAHAPPIPETTTERRLAERLAGELARTVARA------IPFDAPPDDETPPPPDGGHAR 175
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
+ + + SS +++ +
Sbjct: 176 RAHLFAICTIEGAASRTVGEICFALDPVWQQRLFDHLKSSMSRARSV--RRERSLPST-- 231
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+L + + ++ DV+ L+ G V+P A + + ++++ +
Sbjct: 232 RLRLKLTAQLMEMSVPFGDVLRLRPGTVLPVRLHA--PARVMTHDAQLFTASIAEHNGKL 289
Query: 297 TI 298
+
Sbjct: 290 CL 291
>gi|254185166|ref|ZP_04891755.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
gi|184215758|gb|EDU12739.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
Length = 335
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG+ EL +VG+
Sbjct: 257 IDALPVTLEFVLHDERVTVAQLAGCHPGMVLPLRGAPGE-VTIRANGRPFGCGELIQVGE 315
Query: 295 NYTIRIT 301
+ +
Sbjct: 316 QLAVEVK 322
>gi|16799781|ref|NP_470049.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|16413158|emb|CAC95938.1| lin0706 [Listeria innocua Clip11262]
Length = 78
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTGNVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|16799776|ref|NP_470044.1| flagellar motor switch protein [Listeria innocua Clip11262]
gi|46906944|ref|YP_013333.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091655|ref|ZP_00229451.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|254824027|ref|ZP_05229028.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|254853103|ref|ZP_05242451.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|254932027|ref|ZP_05265386.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|255521906|ref|ZP_05389143.1| flagellar motor switch protein fliY C-terminal part [Listeria
monocytogenes FSL J1-175]
gi|290893990|ref|ZP_06556965.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|300764505|ref|ZP_07074498.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|16413153|emb|CAC95933.1| lin0701 [Listeria innocua Clip11262]
gi|46880210|gb|AAT03510.1| flagellar motor switch domain protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47019974|gb|EAL10711.1| flagellar motor switch domain protein [Listeria monocytogenes str.
4b H7858]
gi|164520176|gb|ABY60143.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520178|gb|ABY60144.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520180|gb|ABY60145.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520184|gb|ABY60147.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520186|gb|ABY60148.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520188|gb|ABY60149.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520190|gb|ABY60150.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520192|gb|ABY60151.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520194|gb|ABY60152.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520198|gb|ABY60154.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520204|gb|ABY60157.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520206|gb|ABY60158.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520210|gb|ABY60160.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520212|gb|ABY60161.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520214|gb|ABY60162.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520218|gb|ABY60164.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520220|gb|ABY60165.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520222|gb|ABY60166.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520224|gb|ABY60167.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520226|gb|ABY60168.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520228|gb|ABY60169.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520230|gb|ABY60170.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520234|gb|ABY60172.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520242|gb|ABY60176.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520244|gb|ABY60177.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520246|gb|ABY60178.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520252|gb|ABY60181.1| flagellar motor switch protein [Listeria monocytogenes]
gi|258606452|gb|EEW19060.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|290556436|gb|EFD89975.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|293583579|gb|EFF95611.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293593255|gb|EFG01016.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|300514859|gb|EFK41913.1| flagellar motor switch domain protein [Listeria monocytogenes FSL
N1-017]
gi|328467260|gb|EGF38340.1| flagellar motor switch protein [Listeria monocytogenes 1816]
Length = 99
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 39/98 (39%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + + L E E R+ + VN+ R+ K+ + D+ L IG V+
Sbjct: 1 MEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVL 60
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ + + K++ E + +N+ I I++
Sbjct: 61 EVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 98
>gi|16802735|ref|NP_464220.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|47095259|ref|ZP_00232870.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|224498775|ref|ZP_03667124.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
gi|224502002|ref|ZP_03670309.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|254829350|ref|ZP_05234037.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|254830316|ref|ZP_05234971.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
gi|254900071|ref|ZP_05259995.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911376|ref|ZP_05261388.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
gi|254935703|ref|ZP_05267400.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|255025859|ref|ZP_05297845.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
gi|16410082|emb|CAC98771.1| lmo0693 [Listeria monocytogenes EGD-e]
gi|47016330|gb|EAL07252.1| flagellar motor switch domain protein [Listeria monocytogenes str.
1/2a F6854]
gi|164520174|gb|ABY60142.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520182|gb|ABY60146.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520196|gb|ABY60153.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520200|gb|ABY60155.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520202|gb|ABY60156.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520208|gb|ABY60159.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520216|gb|ABY60163.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520232|gb|ABY60171.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520236|gb|ABY60173.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520238|gb|ABY60174.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520240|gb|ABY60175.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520248|gb|ABY60179.1| flagellar motor switch protein [Listeria monocytogenes]
gi|164520250|gb|ABY60180.1| flagellar motor switch protein [Listeria monocytogenes]
gi|258601763|gb|EEW15088.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258608286|gb|EEW20894.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|293589313|gb|EFF97647.1| flagellar motor switch domain-containing protein [Listeria
monocytogenes J2818]
Length = 99
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E +
Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87
Query: 293 GKNYTIRITDR 303
+N+ I I++
Sbjct: 88 DENFGIVISEI 98
>gi|218887526|ref|YP_002436847.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758480|gb|ACL09379.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 409
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V + + + T+ D+ L G L+ G+ + + L +G
Sbjct: 332 VNALGVTVVFELERRPMTVGDLAALAPGYTFALGADPLGPVTLTVGGRAVGTGRLVDLGG 391
Query: 295 NYTIRITDR 303
+++
Sbjct: 392 TLGVQVLRM 400
>gi|260899856|ref|ZP_05908251.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
gi|221271468|dbj|BAH15020.1| putative type III secretion system apparatus protein VscQ2 [Vibrio
parahaemolyticus]
gi|308107308|gb|EFO44848.1| conserved domain protein [Vibrio parahaemolyticus AQ4037]
gi|328469630|gb|EGF40566.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
10329]
Length = 71
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 31/66 (46%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + ID I TL++++ L+ G +I ++ +L + + I + L ++ Y
Sbjct: 1 MKIAIDVVIAHCSMTLEELLHLQKGNMIKIDDFVQSEVMLKSGNELIATGTLIKIDDQYG 60
Query: 298 IRITDR 303
+ I +
Sbjct: 61 VSIDNV 66
>gi|126442961|ref|YP_001063273.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
gi|126222452|gb|ABN85957.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
Length = 424
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421
>gi|187919911|ref|YP_001888942.1| surface presentation of antigens (SPOA) protein [Burkholderia
phytofirmans PsJN]
gi|187718349|gb|ACD19572.1| surface presentation of antigens (SPOA) protein [Burkholderia
phytofirmans PsJN]
Length = 327
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 224 SEDLIDPFARKT---YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC-AILSA 279
+ + L + D I TL +++ L+ G + L
Sbjct: 234 DANQSAEMTSELIPASALTFSFDAVIGTLSLTLDELMRLRTGSTVSLQQPVGRHAIRLLC 293
Query: 280 NGKEIYSCELGRVGKNYTIRITD 302
G EL + +RI D
Sbjct: 294 QGIPFARGELIDIDDALGVRIVD 316
>gi|254193852|ref|ZP_04900284.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
gi|169650603|gb|EDS83296.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei S13]
Length = 428
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 349 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 408
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 409 VGEHLGVRIIRM 420
>gi|167566299|ref|ZP_02359215.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia oklahomensis EO147]
Length = 144
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
+ + + I+ ++ ++ L+ G V+ + L A G+ I EL VG
Sbjct: 68 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 127
Query: 294 KNYTIRITDRINFD 307
+ +RI D
Sbjct: 128 AHLGVRINRMAGDD 141
>gi|254186718|ref|ZP_04893234.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
gi|157934402|gb|EDO90072.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pasteur 52237]
Length = 428
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 349 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 408
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 409 VGEHLGVRIIRM 420
>gi|116872082|ref|YP_848863.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740960|emb|CAK20080.1| flagellar motor switch protein FliN, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 99
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
R+ + VN+ R+ K+ + D+ L IG V+ + + + K++ E +
Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILM 87
Query: 293 GKNYTIRITDR 303
+N+ I I++
Sbjct: 88 DENFGIVISEI 98
>gi|299066543|emb|CBJ37733.1| protein of unknown function [Ralstonia solanacearum CMR15]
Length = 321
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQV 264
LI +E + +++ +N + L + L++G V
Sbjct: 218 MRLIGPCVATTDGAATERRSEALLTPVLSALSAEPLSMTVELNPVELGLGTLTGLQVGDV 277
Query: 265 IPFLHREKTCAILSA-NGKEIYSCELGRVGKNYTIRI 300
I H + ++ A +G + LGR+ I +
Sbjct: 278 IRIPHALEMPLLVRADDGALLCQAFLGRLDGQKAIEL 314
>gi|238752881|ref|ZP_04614346.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380]
gi|238708920|gb|EEQ01173.1| Flagellar motor switch protein [Yersinia rohdei ATCC 43380]
Length = 292
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 72/207 (34%), Gaps = 17/207 (8%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHET--IPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
N L++ LL + G + E I + N ++ E++L + I+ ++
Sbjct: 85 GNVAFDIDRTLLLNLLNDYYGLTKEKNIISDVENLPITQTEERLKNKLSLDITDLILN-- 142
Query: 151 STTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTT 210
P + DI + ++ + +F L+I + +
Sbjct: 143 ------QPEFGELLDIKNNNSPPIA---NWSYRMDFWLK-GYEKCAFTLLIDLPHVDRFL 192
Query: 211 LISLSSQNKSENQSEDLI-DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
+ + +++ F + +L + + ++++ + T D++ LK G +IP
Sbjct: 193 SKLNNEHQSEKKKNQTFSIKQFDQLVKKLPIRLTSKLSCSELTFSDLMKLKEGDIIPATL 252
Query: 270 REKTCAILSANGKEIYSCELGRVGKNY 296
E + + ++S +
Sbjct: 253 PEHFP--VFIGKESLFSAVVSESRGKL 277
>gi|134282037|ref|ZP_01768743.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
gi|134246566|gb|EBA46654.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
Length = 424
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421
>gi|167573401|ref|ZP_02366275.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia oklahomensis C6786]
Length = 139
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
+ + + I+ ++ ++ L+ G V+ + L A G+ I EL VG
Sbjct: 63 LGDVELPVHVEIDTLSLSIAELAALRPGYVLELPLSARDVPVRLVAYGQTIGGGELVAVG 122
Query: 294 KNYTIRITDRINFD 307
+ +RI D
Sbjct: 123 AHLGVRINRMAGDD 136
>gi|237510474|ref|ZP_04523189.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
gi|235002679|gb|EEP52103.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
Length = 424
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 325 SLAGLPADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 384
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 385 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 421
>gi|76819487|ref|YP_335588.1| SctQ [Burkholderia pseudomallei 1710b]
gi|76583960|gb|ABA53434.1| SctQ [Burkholderia pseudomallei 1710b]
Length = 435
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 356 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 415
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 416 VGEHLGVRIIRM 427
>gi|167898939|ref|ZP_02486340.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 7894]
Length = 174
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE 271
+ Q + + P ++ + + I+ ++ ++ L+ G V+
Sbjct: 75 LPAGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAA 134
Query: 272 KT-CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
+ L A G+ I L VG + +RI D
Sbjct: 135 RDVPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 171
>gi|116872087|ref|YP_848868.1| flagellar motor switch protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|315281359|ref|ZP_07869999.1| conserved domain protein [Listeria marthii FSL S4-120]
gi|116740965|emb|CAK20085.1| flagellar motor switch protein, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|313614998|gb|EFR88502.1| conserved domain protein [Listeria marthii FSL S4-120]
Length = 78
Score = 50.8 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HNIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|329902178|ref|ZP_08273067.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
gi|327548849|gb|EGF33478.1| type III secretion protein [Oxalobacteraceae bacterium IMCC9480]
Length = 317
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 8/138 (5%)
Query: 173 TNRLSNE--FVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLID- 229
L + F + + I + S V P L + + S + ++
Sbjct: 178 DIVLPDTCWFDCSGTGRIRIGSWQLSVVYTAPAGMTLLSLETRMDSLGTIVDTDSLVVSP 237
Query: 230 -----PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
A L + + + TTL + TL G V+P ++A G+ +
Sbjct: 238 SLAGTHDAGGLDTLPLQLHFDMGCCHTTLGGLRTLVAGSVLPIEGGSPAAIGITAGGRTL 297
Query: 285 YSCELGRVGKNYTIRITD 302
EL V IRI
Sbjct: 298 GQGELVEVNGKLAIRIIH 315
>gi|161503488|ref|YP_001570600.1| type III secretion system protein [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864835|gb|ABX21458.1| hypothetical protein SARI_01564 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 322
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 27/69 (39%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL ++ I + + LK G V+P + NG+ I EL G
Sbjct: 246 ELEQLPQSVLFEIGRASVEIGQLRQLKAGDVLPVGGCFAPEVTIRLNGRVIGQGELIACG 305
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 306 NEFMVRITR 314
>gi|317486825|ref|ZP_07945641.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
wadsworthia 3_1_6]
gi|316921988|gb|EFV43258.1| YscQ/HrcQ family type III secretion apparatus protein [Bilophila
wadsworthia 3_1_6]
Length = 388
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 33/99 (33%)
Query: 204 ETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQ 263
T+L + N + T +L V + + + T++DV TL G
Sbjct: 284 ATILSVLNPEEGPMSDENNTAAGAAPSEGVDTGELEVTLTFELERRLMTVRDVETLAPGY 343
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
F L ANGK + L + +++
Sbjct: 344 TFAFGGDALAPVTLYANGKSVGKGRLVDLNGTLGVQVVS 382
Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 33/106 (31%), Gaps = 3/106 (2%)
Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNK 219
L + ++ + +++ + AS+ IP L +L +
Sbjct: 148 LHVPLAVRNVRMIEAAEPAVCALPLTLHVPVGAGASAEAYPIPVRLCLPDRESALELVER 207
Query: 220 SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ A + V + + ++ ++ +L+ V+
Sbjct: 208 LDALPRRRALGLA---GDVPVPVSLEAGRMRLSVNELSSLEPDDVL 250
>gi|194292013|ref|YP_002007920.1| sctq: non flagellar t3S system conserved protein. flin/mopa/spao
family. [Cupriavidus taiwanensis LMG 19424]
gi|193225917|emb|CAQ71864.1| SctQ: non flagellar T3S system conserved protein. FliN/MopA/SpaO
family [Cupriavidus taiwanensis LMG 19424]
Length = 399
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRV 292
+ QL V + + L ++ + G V +++ + ANG I + L V
Sbjct: 324 RLDQLEVTLRFEVGDVAVPLAELRAVAPGYVFELPQPLKQSEVRIVANGNRIGTGTLIAV 383
Query: 293 GKNYTIRIT 301
G +RIT
Sbjct: 384 GNRLGVRIT 392
>gi|317407760|gb|EFV87687.1| YscQ/HrcQ family type III secretion apparatus protein
[Achromobacter xylosoxidans C54]
Length = 396
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGKN 295
Q+ V + + + TL + TL +G+V C + ANG E+ EL V N
Sbjct: 324 QVPVRLGFDLGERLITLDRLRTLALGEVFELDRPVADGCVRIRANGMEVGLGELVEVEGN 383
Query: 296 YTIRITD 302
+R+
Sbjct: 384 IGVRLKS 390
>gi|167467560|ref|ZP_02332264.1| type III secretion system protein [Yersinia pestis FV-1]
Length = 270
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L + I L ++ L +GQ + + NG+ + L R
Sbjct: 191 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 250
Query: 294 KNYTIRI 300
+ +RI
Sbjct: 251 EKLVVRI 257
>gi|162419017|ref|YP_001608229.1| type III secretion system protein [Yersinia pestis Angola]
gi|162351832|gb|ABX85780.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis Angola]
Length = 294
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L + I L ++ L +GQ + + NG+ + L R
Sbjct: 215 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 274
Query: 294 KNYTIRI 300
+ +RI
Sbjct: 275 EKLVVRI 281
>gi|51594681|ref|YP_068872.1| type III secretion system protein [Yersinia pseudotuberculosis IP
32953]
gi|51587963|emb|CAH19566.1| type III secretion system apparatus protein, SsaQ [Yersinia
pseudotuberculosis IP 32953]
Length = 306
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L + I L ++ L +GQ + + NG+ + L R
Sbjct: 227 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 286
Query: 294 KNYTIRI 300
+ +RI
Sbjct: 287 EKLVVRI 293
>gi|150260682|ref|ZP_01917410.1| type III secretion system apparatus protein [Yersinia pestis
CA88-4125]
gi|218927476|ref|YP_002345351.1| type III secretion system protein [Yersinia pestis CO92]
gi|115346087|emb|CAL18955.1| type III secretion system apparatus protein [Yersinia pestis CO92]
gi|149290090|gb|EDM40167.1| type III secretion system apparatus protein [Yersinia pestis
CA88-4125]
Length = 306
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L + I L ++ L +GQ + + NG+ + L R
Sbjct: 227 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 286
Query: 294 KNYTIRI 300
+ +RI
Sbjct: 287 EKLVVRI 293
>gi|167820507|ref|ZP_02452187.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 91]
Length = 199
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 107 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 166
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 167 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 196
>gi|22124443|ref|NP_667866.1| type III secretion system protein [Yersinia pestis KIM 10]
gi|45440279|ref|NP_991818.1| type III secretion system protein [Yersinia pestis biovar Microtus
str. 91001]
gi|108810003|ref|YP_653919.1| type III secretion system protein [Yersinia pestis Antiqua]
gi|108813558|ref|YP_649325.1| type III secretion system protein [Yersinia pestis Nepal516]
gi|145600948|ref|YP_001165024.1| type III secretion system protein [Yersinia pestis Pestoides F]
gi|165926685|ref|ZP_02222517.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165936446|ref|ZP_02225014.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. IP275]
gi|166010408|ref|ZP_02231306.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166213947|ref|ZP_02239982.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167402221|ref|ZP_02307694.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167418911|ref|ZP_02310664.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167426186|ref|ZP_02317939.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|229836524|ref|ZP_04456690.1| type III secretion system apparatus protein [Yersinia pestis
Pestoides A]
gi|229840132|ref|ZP_04460291.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842213|ref|ZP_04462368.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904048|ref|ZP_04519161.1| type III secretion system apparatus protein [Yersinia pestis
Nepal516]
gi|270488966|ref|ZP_06206040.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|294502342|ref|YP_003566404.1| type III secretion protein [Yersinia pestis Z176003]
gi|21957230|gb|AAM84117.1|AE013654_6 putative type III secretion system component [Yersinia pestis KIM
10]
gi|45435135|gb|AAS60695.1| type III secretion system apparatus protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108777206|gb|ABG19725.1| type III secretion system apparatus protein [Yersinia pestis
Nepal516]
gi|108781916|gb|ABG15974.1| type III secretion system apparatus protein [Yersinia pestis
Antiqua]
gi|145212644|gb|ABP42051.1| type III secretion system apparatus protein [Yersinia pestis
Pestoides F]
gi|165915562|gb|EDR34171.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. IP275]
gi|165921308|gb|EDR38532.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165990498|gb|EDR42799.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166204922|gb|EDR49402.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166962905|gb|EDR58926.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167048402|gb|EDR59810.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167054897|gb|EDR64699.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|229679818|gb|EEO75921.1| type III secretion system apparatus protein [Yersinia pestis
Nepal516]
gi|229690523|gb|EEO82577.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696498|gb|EEO86545.1| type III secretion system apparatus protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706208|gb|EEO92216.1| type III secretion system apparatus protein [Yersinia pestis
Pestoides A]
gi|262360422|gb|ACY57143.1| type III secretion protein [Yersinia pestis D106004]
gi|262364372|gb|ACY60929.1| type III secretion protein [Yersinia pestis D182038]
gi|270337470|gb|EFA48247.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pestis KIM D27]
gi|294352801|gb|ADE63142.1| type III secretion protein [Yersinia pestis Z176003]
gi|320013866|gb|ADV97437.1| type III secretion system apparatus protein [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 320
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L + I L ++ L +GQ + + NG+ + L R
Sbjct: 241 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 300
Query: 294 KNYTIRI 300
+ +RI
Sbjct: 301 EKLVVRI 307
>gi|161502065|ref|YP_001569177.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|973277|gb|AAC43944.1| SpaO [Salmonella enterica]
gi|973281|gb|AAC43947.1| SpaO [Salmonella enterica]
gi|160863412|gb|ABX20035.1| hypothetical protein SARI_00082 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 303
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 37/90 (41%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E QL V ++ + K+ TL D+ + Q++ +
Sbjct: 209 QHIEEEKNETETAEILPGLSQLPVKLEFVLYRKQVTLADLEAIGQQQLLSLPTNAECNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHKWLSE 298
>gi|186893684|ref|YP_001870796.1| type III secretion system protein [Yersinia pseudotuberculosis
PB1/+]
gi|186696710|gb|ACC87339.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
pseudotuberculosis PB1/+]
Length = 320
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 23/67 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L + I L ++ L +GQ + + NG+ + L R
Sbjct: 241 QLEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLACQTHCYGEVNICLNGQSVGRGSLLRCD 300
Query: 294 KNYTIRI 300
+ +RI
Sbjct: 301 EKLVVRI 307
>gi|4206077|gb|AAD11410.1| SctQ [Burkholderia pseudomallei]
Length = 310
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 291 VGEHLGVRIIRM 302
>gi|167724021|ref|ZP_02407257.1| SctQ [Burkholderia pseudomallei DM98]
Length = 359
Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|167915304|ref|ZP_02502395.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 112]
Length = 347
Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 268 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 327
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 328 VGEHLGVRIIRM 339
>gi|238023707|ref|YP_002907939.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
glumae BGR1]
gi|237878372|gb|ACR30704.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
glumae BGR1]
Length = 445
Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG 293
++ + + I+ L + +L G V+ L +G+ + EL VG
Sbjct: 368 VGKVELPVQFEIDTVALPLDQLSSLGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVG 427
Query: 294 KNYTIRITDR 303
++ +RI
Sbjct: 428 EHLGVRIIRM 437
>gi|293416352|ref|ZP_06658991.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
gi|291431708|gb|EFF04691.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
Length = 299
Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
++ + QL V++D + K+ TL + L G+V+ + + ANG I
Sbjct: 213 QETEQHVVQDLGQLPVSLDFVLFRKQVTLTGLQELYQGKVLALPAEAEKRTEIRANGALI 272
Query: 285 YSCELGRVGKNYTIRITDRI 304
EL ++ + + IT+ +
Sbjct: 273 GYGELVQLDNSLGVEITEWV 292
>gi|134282546|ref|ZP_01769250.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
gi|134246103|gb|EBA46193.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 305]
Length = 337
Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 258 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 317
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 318 VGEHLGVRIIRM 329
>gi|254301601|ref|ZP_04969045.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
gi|157811292|gb|EDO88462.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
Length = 359
Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|48479064|gb|AAT44855.1| putative type III secretory pathway and flagellar biosynthesis
protein [Burkholderia pseudomallei]
Length = 310
Score = 50.0 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 291 VGEHLGVRIIRM 302
>gi|167923137|ref|ZP_02510228.1| SctQ [Burkholderia pseudomallei BCC215]
gi|217425374|ref|ZP_03456868.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
gi|217391625|gb|EEC31653.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 576]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|167742990|ref|ZP_02415764.1| SctQ [Burkholderia pseudomallei 14]
gi|167828536|ref|ZP_02460007.1| SctQ [Burkholderia pseudomallei 9]
gi|167898603|ref|ZP_02486004.1| SctQ [Burkholderia pseudomallei 7894]
gi|226199135|ref|ZP_03794697.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
gi|254264504|ref|ZP_04955369.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
gi|225928910|gb|EEH24935.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei Pakistan 9]
gi|254215506|gb|EET04891.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|237509496|ref|ZP_04522211.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
gi|235001701|gb|EEP51125.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei MSHR346]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|254183804|ref|ZP_04890396.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
gi|184214337|gb|EDU11380.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1655]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|126457706|ref|YP_001075941.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|167849994|ref|ZP_02475502.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei B7210]
gi|242313295|ref|ZP_04812312.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
gi|126231474|gb|ABN94887.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|242136534|gb|EES22937.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106b]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|126442929|ref|YP_001062994.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
gi|126222420|gb|ABN85925.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 668]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|167820161|ref|ZP_02451841.1| SctQ [Burkholderia pseudomallei 91]
Length = 359
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|53722430|ref|YP_111415.1| type III secretion-associated protein [Burkholderia pseudomallei
K96243]
gi|52212844|emb|CAH38878.1| putative type III secretion-associated protein [Burkholderia
pseudomallei K96243]
Length = 310
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 231 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 290
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 291 VGEHLGVRIIRM 302
>gi|16802740|ref|NP_464225.1| flagellar motor switch protein [Listeria monocytogenes EGD-e]
gi|46906949|ref|YP_013338.1| flagellar motor switch protein [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091660|ref|ZP_00229456.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 4b H7858]
gi|47095264|ref|ZP_00232875.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|217965204|ref|YP_002350882.1| hypothetical protein LMHCC_1927 [Listeria monocytogenes HCC23]
gi|224498780|ref|ZP_03667129.1| flagellar motor switch protein [Listeria monocytogenes Finland
1988]
gi|224501997|ref|ZP_03670304.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-561]
gi|226223329|ref|YP_002757436.1| flagellar switch protein [Listeria monocytogenes Clip81459]
gi|254824022|ref|ZP_05229023.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|254829355|ref|ZP_05234042.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|254830311|ref|ZP_05234966.1| flagellar motor switch protein [Listeria monocytogenes 10403S]
gi|254853098|ref|ZP_05242446.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|254900066|ref|ZP_05259990.1| flagellar motor switch protein [Listeria monocytogenes J0161]
gi|254911381|ref|ZP_05261393.1| flagellar motor switch protein [Listeria monocytogenes J2818]
gi|254932022|ref|ZP_05265381.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|254935708|ref|ZP_05267405.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|254994392|ref|ZP_05276582.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-064]
gi|255027497|ref|ZP_05299483.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-003]
gi|255030383|ref|ZP_05302334.1| flagellar motor switch protein [Listeria monocytogenes LO28]
gi|255521911|ref|ZP_05389148.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-175]
gi|284801028|ref|YP_003412893.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284994170|ref|YP_003415938.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|290893995|ref|ZP_06556970.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|300764510|ref|ZP_07074503.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
gi|16410087|emb|CAC98776.1| lmo0698 [Listeria monocytogenes EGD-e]
gi|46880215|gb|AAT03515.1| putative flagellar motor switch protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016335|gb|EAL07257.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 1/2a F6854]
gi|47019979|gb|EAL10716.1| flagellar motor switch protein, putative [Listeria monocytogenes
str. 4b H7858]
gi|217334474|gb|ACK40268.1| conserved domain protein [Listeria monocytogenes HCC23]
gi|225875791|emb|CAS04494.1| Putative flagellar switch protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258601768|gb|EEW15093.1| flagellar motor switch protein [Listeria monocytogenes FSL N3-165]
gi|258606447|gb|EEW19055.1| flagellar motor switch protein [Listeria monocytogenes FSL R2-503]
gi|258608291|gb|EEW20899.1| flagellar motor switch protein [Listeria monocytogenes F6900]
gi|284056590|gb|ADB67531.1| flagellar motor switch protein [Listeria monocytogenes 08-5578]
gi|284059637|gb|ADB70576.1| flagellar motor switch protein [Listeria monocytogenes 08-5923]
gi|290556441|gb|EFD89980.1| flagellar motor switch protein [Listeria monocytogenes FSL J2-071]
gi|293583574|gb|EFF95606.1| flagellar motor switch protein [Listeria monocytogenes HPB2262]
gi|293589318|gb|EFF97652.1| flagellar motor switch protein [Listeria monocytogenes J2818]
gi|293593250|gb|EFG01011.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-194]
gi|300514864|gb|EFK41918.1| flagellar motor switch protein [Listeria monocytogenes FSL N1-017]
gi|307570237|emb|CAR83416.1| flagellar motor switch protein, putative [Listeria monocytogenes
L99]
gi|313610116|gb|EFR85439.1| conserved domain protein [Listeria monocytogenes FSL F2-208]
gi|313620067|gb|EFR91580.1| conserved domain protein [Listeria innocua FSL S4-378]
gi|328467264|gb|EGF38344.1| flagellar motor switch protein [Listeria monocytogenes 1816]
gi|328475660|gb|EGF46409.1| flagellar motor switch protein [Listeria monocytogenes 220]
gi|332311123|gb|EGJ24218.1| Flagellar motor switch protein [Listeria monocytogenes str. Scott
A]
Length = 78
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|15644623|ref|NP_228488.1| flagellar motor switch protein FliY [Thermotoga maritima MSB8]
Length = 162
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 2/151 (1%)
Query: 9 NTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSG 68
+ + +L TG + + + + +G + + D+ I+ + +
Sbjct: 8 SQEEIDKLLSDSDTGGVLTPEE-KDMIGEIGNIAMGSAATTLSMILGRDIHITVPTVREE 66
Query: 69 KFSHIIHSFKENFVFSQAS-LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSL 127
K ++ F V + LV + + ++G S E + +
Sbjct: 67 KMKNVKSDFSGEQVVVSVEYTEGLEGLNVLVLDKKLVAVIADLMMGGSGEVETEELDEIK 126
Query: 128 STVEKKLAKRTIAQISAVLNQCISTTQESSP 158
+ + + + + L++ + T SP
Sbjct: 127 LSAVGEAMNQMMGSAATSLSELLGITINISP 157
>gi|167841182|ref|ZP_02467866.1| translocation protein in type III secretion [Burkholderia
thailandensis MSMB43]
Length = 327
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+V I + L + L+ G ++ L G+ L +
Sbjct: 260 DASVRIVAQAAAIDVPLDRLAALRSGDILEGPAIGDGLCTLKIGGRPFARGMLLDIDGRL 319
Query: 297 TIRITDRI 304
IRI +
Sbjct: 320 AIRIEHFV 327
>gi|217422634|ref|ZP_03454137.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 576]
gi|217394865|gb|EEC34884.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 576]
Length = 432
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429
>gi|167923472|ref|ZP_02510563.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei BCC215]
Length = 209
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 117 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 176
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 177 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 206
>gi|53722641|ref|YP_111626.1| type III secretion protein [Burkholderia pseudomallei K96243]
gi|76818024|ref|YP_335836.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 1710b]
gi|254264905|ref|ZP_04955770.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
gi|52213055|emb|CAH39093.1| putative type III secretion protein [Burkholderia pseudomallei
K96243]
gi|76582497|gb|ABA51971.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 1710b]
gi|254215907|gb|EET05292.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1710a]
Length = 428
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 336 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 395
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 396 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 425
>gi|251768328|ref|ZP_02270322.2| type III secretion inner membrane protein SctQ [Burkholderia mallei
PRL-20]
gi|243060179|gb|EES42365.1| type III secretion inner membrane protein SctQ [Burkholderia mallei
PRL-20]
Length = 100
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Query: 214 LSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
Q + + P ++ + + I+ ++ ++ L+ G V+ +
Sbjct: 3 AGLQADAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARD 62
Query: 274 -CAILSANGKEIYSCELGRVGKNYTIRITDRINFD 307
L A G+ I L VG + +RI D
Sbjct: 63 VPVRLVAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 97
>gi|226198463|ref|ZP_03794031.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei Pakistan 9]
gi|225929520|gb|EEH25539.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei Pakistan 9]
Length = 432
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429
>gi|254301370|ref|ZP_04968814.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
gi|157811448|gb|EDO88618.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 406e]
Length = 432
Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 340 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 399
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 400 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 429
>gi|212711702|ref|ZP_03319830.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
30120]
gi|212685804|gb|EEB45332.1| hypothetical protein PROVALCAL_02777 [Providencia alcalifaciens DSM
30120]
Length = 309
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVTLK 260
+I + + E + + F + + L V + + T+ ++ TL+
Sbjct: 197 EGIFMIEQLAVAEDEQIDSAMEEEFVDETVRPFHLHGLTVKLTFVLGHSDITVGELDTLQ 256
Query: 261 IGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN--YTIRITDRINFDQKSL 311
G V ++ + AN + I EL +G + + I ++ K L
Sbjct: 257 PGTVYSIGENKEREVKVYANKQLIAEGELTYIGDSDELGLEIKRLVSLGDKRL 309
>gi|126458111|ref|YP_001076229.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 1106a]
gi|242311035|ref|ZP_04810052.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 1106b]
gi|126231879|gb|ABN95292.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 1106a]
gi|242134274|gb|EES20677.1| type III secretion apparatus protein, YscQ/HrcQ family
[Burkholderia pseudomallei 1106b]
Length = 436
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 344 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 403
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 404 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 433
>gi|255023254|ref|ZP_05295240.1| flagellar motor switch protein [Listeria monocytogenes FSL J1-208]
Length = 78
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|312958827|ref|ZP_07773346.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
gi|311286597|gb|EFQ65159.1| type III secretion system rscQ [Pseudomonas fluorescens WH6]
Length = 335
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 1/121 (0%)
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARK-TYQLNVNID 243
++ I++ + L + + + E ++D F + +L++ +
Sbjct: 212 RLHGDIDDETGTACLTLTSIEETFVDEHFTAPDYSEPVEDEPVVDVFGHEPFDELSMALT 271
Query: 244 TRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
R TL ++ L G V+ A L + I +L V ++++
Sbjct: 272 VRCGTLNLTLGELRNLGPGSVLGITGYAPGVAGLYYGDRPIGQGQLVEVDGRLGLQVSRV 331
Query: 304 I 304
+
Sbjct: 332 L 332
>gi|292488066|ref|YP_003530943.1| surface presentation of antigens protein SpaO [Erwinia amylovora
CFBP1430]
gi|292899277|ref|YP_003538646.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291199125|emb|CBJ46239.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291553490|emb|CBA20535.1| Surface presentation of antigens protein SpaO [Erwinia amylovora
CFBP1430]
Length = 307
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GK 294
L + I+ ++ K TL ++ T++ G + P + + N K EL +
Sbjct: 226 SDLPIEIEFVLDSKSVTLAELDTIEPGTLFPLNDCAEQRVKIYLNRKFFARGELVALDNG 285
Query: 295 NYTIRITDR 303
N + I
Sbjct: 286 NLAVEIKQV 294
>gi|167906945|ref|ZP_02494150.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei NCTC 13177]
Length = 359
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGR 291
+ +L + + I+ + + L+ G VI L +G+ + EL
Sbjct: 280 TRIGELELPVQFEIDTVSLPIDQLSALEPGYVIELPVAVTDARLRLVVHGQTVGYGELVA 339
Query: 292 VGKNYTIRITDR 303
VG++ +RI
Sbjct: 340 VGEHLGVRIIRM 351
>gi|167567945|ref|ZP_02360861.1| SctQ [Burkholderia oklahomensis EO147]
gi|167573181|ref|ZP_02366055.1| SctQ [Burkholderia oklahomensis C6786]
Length = 431
Score = 49.6 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
L S ++ L A + +L + + I+ + + L+ G VI
Sbjct: 325 ILLKEFSMSEDADQADAGLAVATADEPARIGELELPVQFEIDTVSLPIDQLSVLEPGYVI 384
Query: 266 PFLHR-EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ +G+ + EL VG++ +RI
Sbjct: 385 ELPVAVADARLRIVVHGQTVGFGELVAVGEHLGVRIIRM 423
>gi|167840285|ref|ZP_02466969.1| Surface presentation of antigens (SPOA) protein domain protein
[Burkholderia thailandensis MSMB43]
Length = 187
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+++ + I+ ++ ++ L+ G V+ + L A G+ I L
Sbjct: 109 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDAPVRLVAYGQAIGGGRLVA 168
Query: 292 VGKNYTIRITDRINFD 307
VG + +RI D
Sbjct: 169 VGAHLGVRIDRMAGDD 184
>gi|332159960|ref|YP_004296537.1| type III secretion system apparatus protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325664190|gb|ADZ40834.1| Type III secretion system apparatus protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 315
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + I L D+ L +GQ + + + +G+ + L
Sbjct: 241 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGRLLCCD 300
Query: 294 KNYTIRITD 302
+ +RI
Sbjct: 301 EQLVVRIDQ 309
>gi|167577438|ref|ZP_02370312.1| type III secretion system protein BsaV [Burkholderia thailandensis
TXDOH]
Length = 320
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ + ++ T+ + G V+P + ANG+ EL +VG
Sbjct: 242 IDALPVTLEFVLQDERVTVAQLARCHPGLVLPL-RGVPGEVTIRANGQPFGIGELIQVGD 300
Query: 295 NYTIRIT 301
+ +
Sbjct: 301 QLAVEVK 307
>gi|167907267|ref|ZP_02494472.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei NCTC 13177]
Length = 217
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 125 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 184
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 185 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 214
>gi|330862414|emb|CBX72573.1| hypothetical protein YEW_HJ33330 [Yersinia enterocolitica W22703]
Length = 316
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + I L D+ L +GQ + + + +G+ + L
Sbjct: 242 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGRLLCCD 301
Query: 294 KNYTIRITD 302
+ +RI
Sbjct: 302 EQLVVRIDQ 310
>gi|255018475|ref|ZP_05290601.1| flagellar motor switch protein [Listeria monocytogenes FSL F2-515]
Length = 64
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
++ K L+ ++ VI +L+ NG I L RV ++ I++T
Sbjct: 1 LEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGIQMT 60
Query: 302 DRIN 305
+ +
Sbjct: 61 ELVR 64
>gi|975754|gb|AAC43845.1| SpaO [Salmonella enterica]
Length = 303
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E QL V ++ ++ K TL D+ + Q++ +
Sbjct: 209 QHIEEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|167850342|ref|ZP_02475850.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei B7210]
Length = 227
Score = 49.6 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 135 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 194
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 195 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 224
>gi|325927674|ref|ZP_08188902.1| HrcQ protein [Xanthomonas perforans 91-118]
gi|325541875|gb|EGD13389.1| HrcQ protein [Xanthomonas perforans 91-118]
Length = 304
Score = 49.6 bits (117), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%)
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200
+ L + + + + +T +V A VL
Sbjct: 134 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 193
Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
P L S + Q+ + +L + + ++ +L +
Sbjct: 194 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 250
Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L+ GQ++ L G+ I + L VG++ ++I
Sbjct: 251 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296
>gi|284007672|emb|CBA73390.1| type III secretion inner membrane protein YscQ,SpaO [Arsenophonus
nasoniae]
Length = 234
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
N S + QL + ++ + + +L + + + G + L
Sbjct: 143 QDDHNASPESSTAIFD-LNQLALKVNFILQRQTFSLNTIKSWQTGTQLRLNSDAHCAIAL 201
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFDQK 309
NG+ EL +VG+ + + ++ +Q+
Sbjct: 202 EINGQIFAKGELIQVGEQLAVELHTLLSTEQE 233
>gi|213615825|ref|ZP_03371651.1| type III secretion system protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 158
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ Q+ + I + + LK G V+P + N + I EL G
Sbjct: 82 ELEQIPQQVLFEIGRASLEIGQLRQLKTGNVLPVGGCFAPEVTIRVNDRIIGQGELIACG 141
Query: 294 KNYTIRITD 302
+ +RIT
Sbjct: 142 NEFMVRITR 150
>gi|975758|gb|AAC43848.1| SpaO [Salmonella enterica]
Length = 303
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E QL V ++ ++ K TL D+ + Q++ +
Sbjct: 209 QHIEEEKNETETAGILPGLNQLPVKLEFVLHRKNVTLADLEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|313624713|gb|EFR94668.1| conserved domain protein [Listeria innocua FSL J1-023]
Length = 78
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|83717115|ref|YP_439032.1| type III secretion system protein BsaV [Burkholderia thailandensis
E264]
gi|167615589|ref|ZP_02384224.1| type III secretion system protein BsaV [Burkholderia thailandensis
Bt4]
gi|257142140|ref|ZP_05590402.1| type III secretion system protein BsaV [Burkholderia thailandensis
E264]
gi|83650940|gb|ABC35004.1| type III secretion system protein BsaV [Burkholderia thailandensis
E264]
Length = 320
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ + ++ T+ + G V+P + ANG+ EL +VG
Sbjct: 242 IDALPVTLEFVLQDERVTVAQLAGCHPGLVLPL-RGVPGEVTIRANGQPFGIGELIQVGD 300
Query: 295 NYTIRIT 301
+ +
Sbjct: 301 QLAVEVK 307
>gi|325917012|ref|ZP_08179251.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
vesicatoria ATCC 35937]
gi|325536763|gb|EGD08520.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
vesicatoria ATCC 35937]
Length = 345
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 202 PQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKI 261
PQ+ LL+T + + + L L + + ++ +L + L+
Sbjct: 241 PQQMLLET---APAMHQDTPESDTSLS---TTDVAALELPVHLEVDQLALSLSVLSGLQP 294
Query: 262 GQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
GQ++ L G+ I L VG + ++I
Sbjct: 295 GQILELSVPVDQADIRLVVYGQTIGVGRLLAVGDHLGVQILSM 337
>gi|260768787|ref|ZP_05877721.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
gi|260616817|gb|EEX42002.1| hypothetical protein VFA_001844 [Vibrio furnissii CIP 102972]
Length = 253
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 8/90 (8%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + Q + + + + NI+ + + ++ DV + +G I
Sbjct: 164 ELLDYFSDGLKKQKDFNVHDVQHQLNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY 223
Query: 271 EKTCAILSANGKEIYSCELGR-VGKNYTIR 299
++ + ++ +L ++
Sbjct: 224 --DLLDVNVENQTLFKGQLIVGENAQLGVK 251
>gi|163732489|ref|ZP_02139934.1| flagellar motor switch protein FliN, putative [Roseobacter
litoralis Och 149]
gi|161393849|gb|EDQ18173.1| flagellar motor switch protein FliN, putative [Roseobacter
litoralis Och 149]
Length = 97
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVG 293
+ + + + + ++D+VTL V+ L + I L G
Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVDDPVDLYIGDRLIARGMLEEKEGDQS 80
Query: 294 KNYTIRITDRIN 305
+R+T+ I+
Sbjct: 81 GQLIVRLTEVID 92
>gi|153950005|ref|YP_001402769.1| type III secretion system protein [Yersinia pseudotuberculosis IP
31758]
gi|152961500|gb|ABS48961.1| type III secretion apparatus protein, YscQ/HrcQ family [Yersinia
pseudotuberculosis IP 31758]
Length = 320
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%)
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISL 214
L + L++ E ++M ++ + PQ + +
Sbjct: 156 WQSGLVAGWCHLSLRQLQQLRPGEG-LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRM 214
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNV-------NIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ Q +E A V + I L ++ L +GQ +
Sbjct: 215 TIQQINEASDPLACGSRAESLPLAAVQFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ NG+ + L R + +RI
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRI 307
>gi|289433976|ref|YP_003463848.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|315301943|ref|ZP_07872944.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|289170220|emb|CBH26760.1| flagellar motor switch protein fliN, putative [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313629685|gb|EFR97817.1| conserved domain protein [Listeria ivanovii FSL F6-596]
gi|313639060|gb|EFS04047.1| conserved domain protein [Listeria seeligeri FSL S4-171]
Length = 78
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HNIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|973269|gb|AAC43938.1| SpaO [Salmonella enterica]
Length = 303
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 37/90 (41%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E QL V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|973273|gb|AAC43941.1| SpaO [Salmonella enterica]
Length = 303
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 37/90 (41%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E QL V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEEKNETETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|78045979|ref|YP_362154.1| HrcQ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78034409|emb|CAJ22054.1| HrcQ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 304
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%)
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200
+ L + + + + +T +V A VL
Sbjct: 134 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 193
Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
P L S + Q+ + +L + + ++ +L +
Sbjct: 194 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 250
Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L+ GQ++ L G+ I + L VG++ ++I
Sbjct: 251 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296
>gi|167915629|ref|ZP_02502720.1| type III secretion inner membrane protein SctQ [Burkholderia
pseudomallei 112]
Length = 238
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 146 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 205
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 206 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 235
>gi|315126003|ref|YP_004068006.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
gi|315014517|gb|ADT67855.1| flagellar motor switch protein FliM [Pseudoalteromonas sp. SM9913]
Length = 301
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 68/260 (26%), Gaps = 30/260 (11%)
Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
DV+IS S + S + + F+ +
Sbjct: 57 LFNDSRFDVEISPCSHSTINSW-FKES--PRIFLACPLFAPTQGEAFLALDFQSAHKTAD 113
Query: 110 NLLGASHETIPQLYNR------SLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
LG + LS E ++ R L + + Q E
Sbjct: 114 LCLGGQFNNSDNSSHDYSPTTNELSATESRICGRL-------LQRQVQGIQGLLFR-ERS 165
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
+ ++K+ + +E+ S+ L +P Q
Sbjct: 166 ALLGEIQKSHALPEALQYLAFKVRFILESQVISWFLWLPISF----------FCAADSEQ 215
Query: 224 SEDLIDPFARKTYQL-NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
D + V + KK TLK + G V+P A+ + K
Sbjct: 216 DPASSDTLNTDMWAQFAVQGQIEMAKKKVTLKQLKACVAGGVLPIEL--NEAALFNLGHK 273
Query: 283 EIYSCELGRVGKNYTIRITD 302
+I+ ++ +IT
Sbjct: 274 QIFKGQVVEQEAGLAFQITQ 293
>gi|170026116|ref|YP_001722621.1| type III secretion system protein [Yersinia pseudotuberculosis
YPIII]
gi|169752650|gb|ACA70168.1| type III secretion system apparatus protein YscQ/HrcQ [Yersinia
pseudotuberculosis YPIII]
Length = 320
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 9/153 (5%)
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIE-NVASSFVLIIPQETLLKTTLISL 214
L + L++ E ++M ++ + PQ + +
Sbjct: 156 WQSGLVAGWCHLSLRQLQQLRPGEG-LRLSMAAELDKEACWLWHHASPQIYIKLEGGNRM 214
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNV-------NIDTRINLKKTTLKDVVTLKIGQVIPF 267
+ Q +E A V + I L ++ L +GQ +
Sbjct: 215 TIQQINEASDPLACGSRAESLPLAAVQFEDLPQTLVMEIGRLTLPLGEIKQLAVGQTLAC 274
Query: 268 LHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ NG+ + L R + +RI
Sbjct: 275 QTHCYGEVNICLNGQSVGRGSLLRCDEQLVVRI 307
>gi|285018282|ref|YP_003375993.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
GPE PC73]
gi|283473500|emb|CBA16003.1| probable xanthomonas secretion apparatus protein [Xanthomonas
albilineans]
Length = 346
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 222 NQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG 281
S + V + L ++ L+ G V+P ++ ANG
Sbjct: 268 ESSPIWVGEL-------PVELSFAFEPLALKLAELSALRPGDVVPLESGV--RLLIHANG 318
Query: 282 KEIYSCELGRVGKNYTIRITDRINFDQ 308
+ + EL V +T +
Sbjct: 319 RPVGEAELVEVEGVLAAEVTAIHLKSE 345
>gi|300936201|ref|ZP_07151137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 21-1]
gi|300458658|gb|EFK22151.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 21-1]
Length = 315
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 27/75 (36%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++IP L + + NG EL V
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIIPLLPEAEKNIEIRVNGALTGYGELVEVDDK 299
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 300 LGVEIHSWLSGNNNV 314
>gi|254499105|ref|ZP_05111795.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12]
gi|254351644|gb|EET10489.1| hypothetical protein LDG_3178 [Legionella drancourtii LLAP12]
Length = 234
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
D + V + + K ++ + +++G V+ H T L + + E
Sbjct: 159 DSLDEALAEHTVKLCLELLPSKLSVNHLAGIQVGDVLSTTHPLSTPLRLICGNELLAQAE 218
Query: 289 LGRVGKNYTI 298
LG + +I
Sbjct: 219 LGYSAHHKSI 228
>gi|259908639|ref|YP_002648995.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|224964261|emb|CAX55768.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
gi|283478611|emb|CAY74527.1| Surface presentation of antigens protein SpaO [Erwinia pyrifoliae
DSM 12163]
Length = 308
Score = 49.3 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + D + + L + I+ ++ K TTL ++ T++ G P + +
Sbjct: 209 TDQQEEYRDEEETLHKW-SDLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKI 267
Query: 278 SANGKEIYSCELGRV-GKNYTIRITDR 303
N K EL + N + I
Sbjct: 268 YLNRKFFARGELVALDNGNLAVEIRQI 294
>gi|310767461|gb|ADP12411.1| Type III secretion apparatus [Erwinia sp. Ejp617]
Length = 308
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL 277
+ + D + + L + I+ ++ K TTL ++ T++ G P + +
Sbjct: 209 TDQQEEYRDEEETLHKW-SDLPIEIEFVLDSKSTTLAELDTIEPGTAFPLNQCAEQRVKI 267
Query: 278 SANGKEIYSCELGRV-GKNYTIRITDR 303
N K EL + N + I
Sbjct: 268 YLNRKFFARGELVALDNGNLAVEIRQI 294
>gi|33596842|ref|NP_884485.1| putative type III secretion protein [Bordetella parapertussis
12822]
gi|33573543|emb|CAE37534.1| putative type III secretion protein [Bordetella parapertussis]
Length = 359
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
Q+ V + + ++ TL + +L G ++ ANG + S L +
Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345
Query: 295 NYTI 298
+
Sbjct: 346 RIGV 349
>gi|315498407|ref|YP_004087211.1| surface presentation of antigens (spoa) protein [Asticcacaulis
excentricus CB 48]
gi|315416419|gb|ADU13060.1| surface presentation of antigens (SPOA) protein [Asticcacaulis
excentricus CB 48]
Length = 93
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 241 NIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + ++ ++ + G VIP RE + AN + E+ + +I +
Sbjct: 20 EISVLLGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEKISIVV 79
Query: 301 TD 302
T
Sbjct: 80 TR 81
>gi|315180490|gb|ADT87404.1| hypothetical flagellar motor switch protein [Vibrio furnissii NCTC
11218]
Length = 108
Score = 49.3 bits (116), Expect = 9e-04, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
+ + + Q + I + + NI+ + + ++ DV + +G I
Sbjct: 19 ELLDYFSDGLKKQKDFNIHDVQHQLNDIPFNINVVLMKSELSINDVNAIAVGDFIELQKY 78
Query: 271 EKTCAILSANGKEIYSCELGR-VGKNYTIR 299
++ + ++ +L ++
Sbjct: 79 --DLLDVNVENQTLFKGQLIVGENAQLGVK 106
>gi|33600616|ref|NP_888176.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
gi|33568215|emb|CAE32128.1| putative type III secretion protein [Bordetella bronchiseptica
RB50]
Length = 359
Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
Q+ V + + ++ TL + +L G ++ ANG + S L +
Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345
Query: 295 NYTI 298
+
Sbjct: 346 RIGV 349
>gi|238759390|ref|ZP_04620555.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
gi|238702417|gb|EEP94969.1| Type III secretion apparatus protein [Yersinia aldovae ATCC 35236]
Length = 311
Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + + E L + +L V + + + L+++ ++ G
Sbjct: 201 VIEENIDNIEEVEETVPTLDEVLPENLPSHFDVTKLTVKLTFVLGHSEIPLEELAHIQPG 260
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
V + + AN + + EL +G
Sbjct: 261 AVYSLGADKDREVKVYANKQLVAEGELVYIGD 292
>gi|259909717|ref|YP_002650073.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
gi|224965339|emb|CAX56871.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcQ protein [Erwinia pyrifoliae Ep1/96]
gi|283479803|emb|CAY75719.1| Type III secretion protein HrcQa [Erwinia pyrifoliae DSM 12163]
Length = 341
Score = 48.9 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTL 253
L +P LL + + + +E F + L ++++ R TL
Sbjct: 223 LQLPHHFLLNHLESTALNSADDDALNEGSQPEFLSGEERPQLASLPLSLEVRCGRTALTL 282
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ L+ G V+ + A L I EL V +
Sbjct: 283 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 324
>gi|261344592|ref|ZP_05972236.1| putative surface presentation of antigens protein [Providencia
rustigianii DSM 4541]
gi|282567506|gb|EFB73041.1| putative surface presentation of antigens protein [Providencia
rustigianii DSM 4541]
Length = 309
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
L V + + + +L ++ ++ G + ++ + AN + EL +G
Sbjct: 230 NVNDLTVKLTFVLGHSEVSLAELNHMQPGTIFSIGENKEREVKVYANKQLFAEGELTYIG 289
Query: 294 KN--YTIRITDRINFDQKSL 311
++ + IT ++ K L
Sbjct: 290 ESEELGLEITRLVSLGDKRL 309
>gi|33593241|ref|NP_880885.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|29603233|emb|CAC79578.1| bscQ [Bordetella pertussis Tohama I]
gi|33563616|emb|CAE42517.1| putative type III secretion protein [Bordetella pertussis Tohama I]
gi|332382650|gb|AEE67497.1| putative type III secretion protein [Bordetella pertussis CS]
Length = 359
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
Q+ V + + ++ TL + +L G ++ ANG + S L +
Sbjct: 286 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 345
Query: 295 NYTI 298
+
Sbjct: 346 RIGV 349
>gi|167743329|ref|ZP_02416103.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
pseudomallei 14]
Length = 177
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 219 KSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAIL 277
+ + P ++ + + I+ ++ ++ L+ G V+ + L
Sbjct: 85 DAPPRDARYAAPEPADLGEVALPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRL 144
Query: 278 SANGKEIYSCELGRVGKNYTIRITDRINFD 307
A G+ I L VG + +RI D
Sbjct: 145 VAYGQAIGGGRLVAVGAHLGVRIDRMAGDD 174
>gi|16520043|ref|NP_444163.1| component RhcQ of type III secretion apparatus [Sinorhizobium
fredii NGR234]
gi|2494558|sp|P55719|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK
gi|2182736|gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium
fredii NGR234]
Length = 358
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 28/76 (36%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + + +L ++ + G V + ANG+ I ++ R+
Sbjct: 283 ADLDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRI 342
Query: 293 GKNYTIRITDRINFDQ 308
G + IR+ R+ +
Sbjct: 343 GDDLGIRLRGRLACND 358
>gi|312597800|gb|ADQ89915.1| RscQ [Pseudomonas fluorescens]
Length = 367
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 31/101 (30%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
E ++ + +E + + L + + R + TL ++ L G
Sbjct: 263 AEAAEHPESAYAAADTEEAPMTEPVAAEVPERFDDLPLALTIRCGHLQLTLGELRNLAPG 322
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
V+ A L + + EL V ++I
Sbjct: 323 AVLQVQGVAPGTAALFYGERALAHGELVEVDGRLGLQIAHV 363
>gi|313634375|gb|EFS00970.1| conserved domain protein [Listeria seeligeri FSL N1-067]
Length = 78
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + ID + K + ++ +K G V ++ +GK I E+
Sbjct: 5 HSIPLRIDFELGRTKQPIASLLDVKKGTVFRLEDSVANVVKITISGKCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++IT
Sbjct: 65 MFVKITK 71
>gi|89898774|ref|YP_515884.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
gi|89332146|dbj|BAE81739.1| type III secretion flagellar motor switch domain [Chlamydophila
felis Fe/C-56]
Length = 371
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 225 EDLIDPFARKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSA 279
E+ ++ + + + ++ T+++ + L G ++ L
Sbjct: 288 EEPVEETSESLPAAPLPGNCKLVAEVSRYSLTVEEFLKLSQGSILNLNGVHPSRGVDLIL 347
Query: 280 NGKEIYSCELGRVGKNYTIRITDR 303
NG ++ E+ +G IR+ +
Sbjct: 348 NGAKVGRGEIVSLGDVLGIRVLEV 371
>gi|330812431|ref|YP_004356893.1| type III secretion protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380539|gb|AEA71889.1| putative type III secretion protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 367
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 31/101 (30%)
Query: 203 QETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
E ++ + +E + + L + + R + TL ++ L G
Sbjct: 263 AEAAEHPESAYAAADTEEAPMTEPVAAEVPERFDDLPLALTIRCGHLQLTLGELRNLAPG 322
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
V+ A L + + EL V ++I
Sbjct: 323 AVLQVQGVAPGTAALFYGERALAHGELVEVDGRLGLQIAHV 363
>gi|310766419|gb|ADP11369.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
pathway-hrcQ protein [Erwinia sp. Ejp617]
Length = 338
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTL 253
L +P LL + + + +E F + L ++++ R TL
Sbjct: 220 LQLPHHFLLNHLESTALNSADDDALTEGSQPEFLSGEERPQLASLPLSLEVRCGRTALTL 279
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ L+ G V+ + A L I EL V +
Sbjct: 280 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321
>gi|167840169|ref|ZP_02466853.1| type III secretion system protein BsaV [Burkholderia thailandensis
MSMB43]
Length = 168
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ ++ ++ T+ + G V+P + ANG EL +VG+
Sbjct: 90 VAALPVTLEFVLHDERVTVAQLAGCHPGLVLPLRGAPGE-VTIRANGLPFGRGELIQVGE 148
Query: 295 NYTIRIT 301
+ +
Sbjct: 149 QLAVEVK 155
>gi|312884809|ref|ZP_07744501.1| putative flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367461|gb|EFP95021.1| putative flagellar motor switch protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 272
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
+ + +T + + + Q+ + + + N+S + F Q +
Sbjct: 154 IWVQLMITTKEAHGVIDIFLDQQLIDTLSAELELTPNESMYED------FCLSLTQTPIK 207
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
++ ++ K L ++++L+ ++P A + ++ + +
Sbjct: 208 LNIVLSKKTMPLSNLLSLRPNDILPIDLSSTAPAH--VGEEYLFRGRVAERDSQLVL--- 262
Query: 302 DRINFDQK 309
I+ D++
Sbjct: 263 -IISNDKE 269
>gi|91791431|ref|YP_561082.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
gi|91713433|gb|ABE53359.1| surface presentation of antigens (SPOA) protein [Shewanella
denitrificans OS217]
Length = 103
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 26/74 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
Q + ++ I ++ ++ LK ++ + + L I L V +
Sbjct: 30 LEQTKIELNVNIGDVSMSISELKELKENSIVKLAQKVDSEFELKWKDVVIAKGRLVAVDE 89
Query: 295 NYTIRITDRINFDQ 308
+ IT + +Q
Sbjct: 90 YLALEITQVTSNEQ 103
>gi|238787476|ref|ZP_04631274.1| Type III secretion system apparatus protein [Yersinia frederiksenii
ATCC 33641]
gi|238724263|gb|EEQ15905.1| Type III secretion system apparatus protein [Yersinia frederiksenii
ATCC 33641]
Length = 307
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 23/68 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + I L+++ L +GQ + R + +G+ + S L
Sbjct: 234 LDDLPQTLVMEIGRLTLPLREIKQLAVGQTLACQTRCYGEVNIRLHGQPVGSGSLLSCDG 293
Query: 295 NYTIRITD 302
+RI
Sbjct: 294 ELVVRIEQ 301
>gi|163738044|ref|ZP_02145460.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
gi|163742560|ref|ZP_02149946.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
2.10]
gi|161384145|gb|EDQ08528.1| flagellar motor switch protein FliN [Phaeobacter gallaeciensis
2.10]
gi|161388660|gb|EDQ13013.1| surface presentation of antigens (SPOA) protein [Phaeobacter
gallaeciensis BS107]
Length = 98
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
+ ++D+V L ++ R + L + + +L G +R+T+
Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89
Query: 303 R 303
Sbjct: 90 I 90
>gi|118592625|ref|ZP_01550015.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
gi|118434676|gb|EAV41327.1| hypothetical protein SIAM614_01014 [Stappia aggregata IAM 12614]
Length = 360
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/177 (10%), Positives = 54/177 (30%), Gaps = 10/177 (5%)
Query: 133 KLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIEN 192
++ + ++ E +P ++++ V +
Sbjct: 184 RMIPIQVERLVGTAELMWVEICELAPGDCILISEAAAADQLTVIASDRV----FAFEEVD 239
Query: 193 VASSFVLIIPQETLL-KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN--IDTRINLK 249
S +P + LL K+ + + E+ + ++ + + + + R+
Sbjct: 240 EGWSCAKTVPLKQLLFKSRDAGETLLDNCESALPEFLEEVGKFVPEAPLKIGLSFRLGSA 299
Query: 250 KTTLKDVVTLKIGQVIPFLHREKT---CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ ++ + G + + AN I +L RVG +R++
Sbjct: 300 NLSATEIANWRPGAIANLPDSLNESNTEVKVVANDTTIAQGDLVRVGDRVGVRLSRI 356
>gi|84621751|ref|YP_449123.1| HrcQ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|12802688|gb|AAK08059.1|AF320050_3 HrcQ [Xanthomonas oryzae pv. oryzae]
gi|9711592|dbj|BAB07861.1| HrcQ [Xanthomonas oryzae pv. oryzae]
gi|84365691|dbj|BAE66849.1| HrcQ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 304
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + Q+ + +L + + ++ +L + L+ GQ+
Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256
Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G+ I + L VG++ ++I
Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296
>gi|330819400|ref|YP_004348262.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
gladioli BSR3]
gi|327371395|gb|AEA62750.1| Type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
gladioli BSR3]
Length = 474
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHRE-KTCAILSANGKEIYSCELGRVG 293
+ + + I+ L + L G V+ L +G+ + EL VG
Sbjct: 397 VGAIELPVQFEIDTVALPLDQLSALGPGYVVELPVPAADAQLRLVVHGQTVGFGELVTVG 456
Query: 294 KNYTIRITDR 303
++ +RI
Sbjct: 457 EHLGVRIIRM 466
>gi|7288130|dbj|BAA92825.1| hrpD1 [Xanthomonas oryzae pv. oryzae]
gi|24251297|gb|AAN46416.1| HrcQ [Xanthomonas oryzae pv. oryzae]
gi|50428355|dbj|BAD29992.1| HrcQ [Xanthomonas oryzae pv. oryzae]
Length = 304
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + Q+ + +L + + ++ +L + L+ GQ+
Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256
Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G+ I + L VG++ ++I
Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296
>gi|254475007|ref|ZP_05088393.1| Surface presentation of antigens protein [Ruegeria sp. R11]
gi|214029250|gb|EEB70085.1| Surface presentation of antigens protein [Ruegeria sp. R11]
Length = 98
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
+ ++D+V L ++ R + L + + +L G +R+T+
Sbjct: 30 GKARPLIRDLVNLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMEGEQAGQLAVRLTE 89
Query: 303 R 303
Sbjct: 90 I 90
>gi|299069227|emb|CBJ40487.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum CMR15]
Length = 361
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 285 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 344
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 345 EQLGLQI 351
>gi|219566951|dbj|BAH04982.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
Length = 354
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 278 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 337
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 338 EQLGLQI 344
>gi|170690584|ref|ZP_02881751.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
graminis C4D1M]
gi|170145019|gb|EDT13180.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
graminis C4D1M]
Length = 446
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVG 293
+L++ + ++ L + L+ G V+ L +G+ I EL VG
Sbjct: 369 IGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVADAQLKLVTHGQTIGYGELVTVG 428
Query: 294 KNYTIRITDRINFD 307
+ IRI + D
Sbjct: 429 DHLGIRILRMAHGD 442
>gi|76152315|gb|ABA39816.1| HrcQ [Erwinia pyrifoliae]
Length = 338
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFAR-----KTYQLNVNIDTRINLKKTTL 253
L +P LL + + + +E F + L ++++ R TL
Sbjct: 220 LQLPHHFLLNHLESTALNSADDDALNEGSQPEFLSGEDNPQLASLPLSLEVRCGRTALTL 279
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ L+ G V+ + A L I EL V +
Sbjct: 280 GELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVEGH 321
>gi|6708103|gb|AAF25800.1|AF172245_2 BscQ [Bordetella bronchiseptica]
Length = 123
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR-EKTCAILSANGKEIYSCELGRVGK 294
Q+ V + + ++ TL + +L G ++ ANG + S L +
Sbjct: 50 DQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERPIADGPVMVRANGLLLGSGRLVDIDG 109
Query: 295 NYTI 298
+
Sbjct: 110 RIGV 113
>gi|212702681|ref|ZP_03310809.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
gi|212673953|gb|EEB34436.1| hypothetical protein DESPIG_00709 [Desulfovibrio piger ATCC 29098]
Length = 398
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA-ILSANGKEIYSCELGRVG 293
L + + I L ++ L G + + + G+ + L VG
Sbjct: 309 VGALELPVVFEIGRLHLRLDELAALVPGHTLALGGETPSPVVDIRVAGQLLAQGRLVDVG 368
Query: 294 KNYTIRITDRINFDQK 309
++IT +
Sbjct: 369 GIPGVQITRMHAAGRD 384
>gi|8996040|gb|AAF82339.1|AF005744_18 YsaQ [Yersinia enterocolitica]
gi|15088608|gb|AAK84119.1|AF369954_17 YsaQ [Yersinia enterocolitica]
Length = 312
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + +++ E L + +L V + + + L+++ ++ G
Sbjct: 202 VIEENIDDMQETEDTVPTLDEVLPEYLPSRFDVAKLTVKLTFVLGHSEILLEELAHIQPG 261
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
V + + AN + + EL +G
Sbjct: 262 SVYSLGADKDREVKVYANKQLVAEGELIYIGD 293
>gi|318607489|emb|CBY28987.1| type III secretion inner membrane protein (YscQ,homologous to
flagellar export components) [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 316
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 24/69 (34%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + I L D+ L +GQ + + + +G+ + L
Sbjct: 242 ELEQLPQTLVMEIGRLTIPLADIKQLAVGQTLACQTQFYGEVNIRLHGQPVGRGSLLCCD 301
Query: 294 KNYTIRITD 302
+ +RI
Sbjct: 302 EQLVVRIDQ 310
>gi|331654352|ref|ZP_08355352.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli M718]
gi|331047734|gb|EGI19811.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli M718]
Length = 315
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 32/94 (34%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ +++ D +L V I+ + K L ++ L ++I L +
Sbjct: 221 KKSEIEINDENDDQMINSYEELPVKIEFVLGKKVMNLYEIDELCAKRIISLLPESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEIHSWLSRNNNV 314
>gi|123443728|ref|YP_001007699.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090689|emb|CAL13565.1| type III secretion apparatus protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 312
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPF--ARKTYQLNVNIDTRINLKKTTLKDVVTLKIG 262
+ + +++ E L + +L V + + + L+++ ++ G
Sbjct: 202 VIEENIDDMQETEDTVPTLDEVLPEYLPSRFDVAKLTVKLTFVLGHSEILLEELAHIQPG 261
Query: 263 QVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
V + + AN + + EL +G
Sbjct: 262 SVYSLGADKDREVKVYANKQLVAEGELIYIGD 293
>gi|167030913|gb|ABZ05781.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
Length = 389
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 25/75 (33%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
D L V + R TL ++ L G V+ A+L + S
Sbjct: 291 SDNVTENLPPLPVTLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQALLYHGDIALASG 350
Query: 288 ELGRVGKNYTIRITD 302
+L V ++IT
Sbjct: 351 DLVDVKGRLGLQITQ 365
>gi|300693807|ref|YP_003749780.1| type III secretion system apparatus protein hrcq [Ralstonia
solanacearum PSI07]
gi|299075844|emb|CBJ35153.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum PSI07]
Length = 355
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 279 LEQLEVPVHLELAVMGMPLSELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 339 EQLGLQI 345
>gi|58579705|ref|YP_198721.1| hypothetical protein XOO0082 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58424299|gb|AAW73336.1| hrpD1 [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 334
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + Q+ + +L + + ++ +L + L+ GQ+
Sbjct: 230 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 286
Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G+ I + L VG++ ++I
Sbjct: 287 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 326
>gi|332280452|ref|ZP_08392865.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
gi|332102804|gb|EGJ06150.1| surface presentation of antigens protein SpaO [Shigella sp. D9]
Length = 190
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 96 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 155
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189
>gi|111146916|gb|ABH07401.1| HrcQ [Xanthomonas oryzae pv. oryzicola]
Length = 304
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + Q+ + +L + + ++ +L + L+ GQ+
Sbjct: 200 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 256
Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G+ I + L VG++ ++I
Sbjct: 257 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 296
>gi|167584012|ref|ZP_02376400.1| type III secretion inner membrane protein SctQ [Burkholderia
ubonensis Bu]
Length = 144
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
+++ + I+ ++ ++ L+ G V+ + L A G+ I L
Sbjct: 66 ADLGDVDLPVHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVA 125
Query: 292 VGKNYTIRITDRINFD 307
VG + +RI D
Sbjct: 126 VGAHLGVRIDRMAGDD 141
>gi|50121008|ref|YP_050175.1| type III secretion system protein [Pectobacterium atrosepticum
SCRI1043]
gi|42560423|gb|AAS20383.1| HrcQ [Pectobacterium atrosepticum]
gi|49611534|emb|CAG74982.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
Length = 405
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 28/84 (33%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
D L + + R TL ++ L G V+ A L + S
Sbjct: 307 SDNVTESLPPLPITLHIRCGSLTMTLAELQHLASGSVLTLRDVVPGQAWLYHGDIALASG 366
Query: 288 ELGRVGKNYTIRITDRINFDQKSL 311
+L V ++IT R + + L
Sbjct: 367 DLVDVEGRLGLQITQRFSTPKPML 390
>gi|4494847|gb|AAD21320.1| HrcQ [Xanthomonas euvesicatoria]
Length = 268
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 12/166 (7%)
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMN--MTIENV----ASSFVLI 200
+ L + + + + +T +V A VL
Sbjct: 98 QPAWLAALRVNTRLRIGGRTASAALLQSLRPGDVLLHCTASAAVTSGDVLWGIAGGVVLR 157
Query: 201 IPQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
P L S + Q+ + +L + + ++ +L +
Sbjct: 158 APVRLNLQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSG 214
Query: 259 LKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
L+ GQ++ L G+ I + L VG++ ++I
Sbjct: 215 LQPGQILELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 260
>gi|300310128|ref|YP_003774220.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
gi|300072913|gb|ADJ62312.1| type III secretion system protein [Herbaspirillum seropedicae SmR1]
Length = 400
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 23/66 (34%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
+L + + + +L + L V+ +++ G E+ E+ V
Sbjct: 330 ELPLTLQVELGRLSLSLSQLRALGEQVVLELHGASAQALRITSAGVELGRGEVVSVDGRL 389
Query: 297 TIRITD 302
+RI
Sbjct: 390 GVRIVR 395
>gi|209920318|ref|YP_002294402.1| putative type III secretion protein [Escherichia coli SE11]
gi|209913577|dbj|BAG78651.1| putative type III secretion protein [Escherichia coli SE11]
Length = 190
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 96 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 155
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189
>gi|325921928|ref|ZP_08183739.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
gardneri ATCC 19865]
gi|325547630|gb|EGD18673.1| type III secretion system apparatus protein YscQ/HrcQ [Xanthomonas
gardneri ATCC 19865]
Length = 321
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 42/165 (25%), Gaps = 12/165 (7%)
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEF--VTTINMNMTIE----NVASSFVLII 201
+ + L + + + + VL
Sbjct: 152 PAWMSALRVTTRLRIGQRTAAAALLQSLRPGDVLLHALATAPVRSGELLWGIPGGAVLRA 211
Query: 202 PQETLL--KTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTL 259
P L + + Q+ A L + + ++ +L + L
Sbjct: 212 PVRLTLQQMILETAPTMQHDMPASDSSSP---ATDVAALELPVQLEVDQLALSLSVLSGL 268
Query: 260 KIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ GQ++ L G+ I L VG++ ++I
Sbjct: 269 QPGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 313
>gi|300950615|ref|ZP_07164517.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 116-1]
gi|300958196|ref|ZP_07170350.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 175-1]
gi|301643798|ref|ZP_07243835.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 146-1]
gi|307139551|ref|ZP_07498907.1| surface presentation of antigens protein SpaO [Escherichia coli
H736]
gi|331643551|ref|ZP_08344682.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli H736]
gi|300315148|gb|EFJ64932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 175-1]
gi|300450095|gb|EFK13715.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 116-1]
gi|301077831|gb|EFK92637.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 146-1]
gi|309703223|emb|CBJ02558.1| type III secretion system protein [Escherichia coli ETEC H10407]
gi|331037022|gb|EGI09246.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli H736]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|301026122|ref|ZP_07189596.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 196-1]
gi|299879817|gb|EFI88028.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 196-1]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|312171086|emb|CBX79345.1| Type III secretion protein HrcQa [Erwinia amylovora ATCC BAA-2158]
Length = 338
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L ++++ R TL ++ L+ G V+ + A L I EL V
Sbjct: 260 QLASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319
Query: 294 KN 295
+
Sbjct: 320 GH 321
>gi|256024630|ref|ZP_05438495.1| surface presentation of antigens protein SpaO [Escherichia sp.
4_1_40B]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|292487017|ref|YP_003529887.1| type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
gi|292900598|ref|YP_003539967.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|89474869|gb|AAB06004.2| HrcQ [Erwinia amylovora]
gi|291200446|emb|CBJ47575.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552434|emb|CBA19479.1| Type III secretion protein HrcQa [Erwinia amylovora CFBP1430]
Length = 338
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ L ++++ R TL ++ L+ G V+ + A L I EL V
Sbjct: 260 QLASLPLSLEVRCGRTALTLGELQRLQAGSVVTLDNVTPGEAGLYHGDTLIARGELVDVE 319
Query: 294 KN 295
+
Sbjct: 320 GH 321
>gi|293416109|ref|ZP_06658749.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
gi|291432298|gb|EFF05280.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B185]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKSESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|15803390|ref|NP_289423.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 EDL933]
gi|15832980|ref|NP_311753.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. Sakai]
gi|195936472|ref|ZP_03081854.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. EC4024]
gi|217327510|ref|ZP_03443593.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
str. TW14588]
gi|254794807|ref|YP_003079644.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. TW14359]
gi|261226167|ref|ZP_05940448.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256579|ref|ZP_05949112.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
FRIK966]
gi|12517368|gb|AAG57982.1|AE005515_4 typeIII secretion apparatus protein [Escherichia coli O157:H7 str.
EDL933]
gi|13363198|dbj|BAB37149.1| type III secretion protein EpaO [Escherichia coli O157:H7 str.
Sakai]
gi|217319877|gb|EEC28302.1| type III secretion apparatus protein EpaO [Escherichia coli O157:H7
str. TW14588]
gi|254594207|gb|ACT73568.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
TW14359]
gi|320189200|gb|EFW63859.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. EC1212]
gi|326339059|gb|EGD62874.1| surface presentation of antigens protein SpaO [Escherichia coli
O157:H7 str. 1044]
Length = 328
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 28/84 (33%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 234 KKSESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 293
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 294 IRVNGALTGYGELVEVDDKLGVEI 317
>gi|17549082|ref|NP_522422.1| Hrp conserved protein HRCQ [Ralstonia solanacearum GMI1000]
gi|6066702|emb|CAB58248.1| HrpQ protein [Ralstonia solanacearum]
gi|17431333|emb|CAD18012.1| hrp conserved protein hrcq [Ralstonia solanacearum GMI1000]
gi|1097281|prf||2113360G hrpQ gene
Length = 354
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 278 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVSVRLVCHGQTLGHGQLVAVG 337
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 338 EQLGLQI 344
>gi|329889297|ref|ZP_08267640.1| type III secretion system protein [Brevundimonas diminuta ATCC
11568]
gi|328844598|gb|EGF94162.1| type III secretion system protein [Brevundimonas diminuta ATCC
11568]
Length = 209
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKN 295
+ + + LK + L+ G ++P + L + G+ L +G+
Sbjct: 135 DTPIAVTVDLGETAVPLKTLTELRPGAILPLTGLDAEMRVTLRSAGQAFARGRLVSLGEA 194
Query: 296 YTIRITDRINFDQ 308
Y + I + +
Sbjct: 195 YAVLIDAVADPKE 207
>gi|224584669|ref|YP_002638467.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|224469196|gb|ACN47026.1| type III secretion protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 299
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 223 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 282
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 283 TLGVEIHEWLSE 294
>gi|166714029|ref|ZP_02245236.1| hrpD1 [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 317
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + Q+ + +L + + ++ +L + L+ GQ+
Sbjct: 213 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 269
Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G+ I + L VG++ ++I
Sbjct: 270 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 309
>gi|157154771|ref|YP_001464198.1| type III secretion apparatus protein EpaO2 [Escherichia coli
E24377A]
gi|300820662|ref|ZP_07100813.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 119-7]
gi|309793923|ref|ZP_07688348.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 145-7]
gi|157076801|gb|ABV16509.1| type III secretion apparatus protein EpaO2 [Escherichia coli
E24377A]
gi|300526926|gb|EFK47995.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 119-7]
gi|308122330|gb|EFO59592.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 145-7]
Length = 190
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 30/94 (31%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 96 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIK 155
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 156 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 189
>gi|973297|gb|AAC43959.1| SpaO [Salmonella enterica]
gi|975742|gb|AAC43836.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 36/90 (40%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E L V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|975746|gb|AAC43839.1| SpaO [Salmonella enterica]
gi|975750|gb|AAC43842.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 36/90 (40%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E ++E L V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEEKNETETADILPGLNHLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPVNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|83747859|ref|ZP_00944892.1| HrcQ [Ralstonia solanacearum UW551]
gi|83725506|gb|EAP72651.1| HrcQ [Ralstonia solanacearum UW551]
Length = 355
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 338
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 339 EQLGLQI 345
>gi|300697462|ref|YP_003748123.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum CFBP2957]
gi|299074186|emb|CBJ53731.1| type III secretion system apparatus protein HrcQ [Ralstonia
solanacearum CFBP2957]
Length = 355
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 279 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDATVRLVCHGQTLGHGQLVAVG 338
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 339 EQLGLQI 345
>gi|254465587|ref|ZP_05078998.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
gi|206686495|gb|EDZ46977.1| Surface presentation of antigens protein [Rhodobacterales bacterium
Y4I]
Length = 98
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
+ ++D+V+L ++ R + L + + +L G +R+T+
Sbjct: 30 GKARPLIRDLVSLGENAILTLDKRVEDPVDLYVGDRLVARGQLEELEGEQAGQLAVRLTE 89
Query: 303 R 303
Sbjct: 90 I 90
>gi|170018890|ref|YP_001723844.1| surface presentation of antigens protein SpaO [Escherichia coli
ATCC 8739]
gi|169753818|gb|ACA76517.1| type III secretion system apparatus protein YscQ/HrcQ [Escherichia
coli ATCC 8739]
gi|323941616|gb|EGB37796.1| YscQ/HrcQ family protein type III secretion lipoprotein
[Escherichia coli E482]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|157162321|ref|YP_001459639.1| surface presentation of antigens protein SpaO [Escherichia coli HS]
gi|157068001|gb|ABV07256.1| type III secretion apparatus protein EpaO [Escherichia coli HS]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|62181393|ref|YP_217810.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|62129026|gb|AAX66729.1| surface presentation of antigens; secretory proteins [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|322715877|gb|EFZ07448.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 303
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|207739217|ref|YP_002257610.1| hrp protein hrcq [Ralstonia solanacearum IPO1609]
gi|206592590|emb|CAQ59496.1| hrp conserved protein hrcq [Ralstonia solanacearum IPO1609]
Length = 362
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQPQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 345
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 346 EQLGLQI 352
>gi|188574346|ref|YP_001911275.1| type III secretion apparatus protein, YscQ/HrcQ family [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188518798|gb|ACD56743.1| type III secretion apparatus protein, YscQ/HrcQ family [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 273
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
S + Q+ + +L + + ++ +L + L+ GQ+
Sbjct: 169 MQQMILEASPTMQHDTFEPEVAPSTS---NVAELELPVQLEVDQLALSLSTLSGLQPGQI 225
Query: 265 IPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G+ I + L VG++ ++I
Sbjct: 226 LELSVPVDQADIRLVVYGQTIGTGRLLAVGEHLGVQILSM 265
>gi|168235931|ref|ZP_02660989.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|194738216|ref|YP_002115843.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|194713718|gb|ACF92939.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197290676|gb|EDY30030.1| type III secretion apparatus protein, YscQ/HrcQ family protein
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
Length = 303
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ T+ Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|188496341|ref|ZP_03003611.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli 53638]
gi|188491540|gb|EDU66643.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli 53638]
Length = 315
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|32454377|gb|AAP82990.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
Length = 303
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLVGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|253688596|ref|YP_003017786.1| type III secretion system apparatus protein YscQ/HrcQ
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251755174|gb|ACT13250.1| type III secretion system apparatus protein YscQ/HrcQ
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 386
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 185 NMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDT 244
+T S +P S + E + D L V +
Sbjct: 246 TFTITDMETVS-----MPSSATDTMFADPHSEASAFEFTQK--SDNVTESLPPLPVTLHL 298
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
R TL ++ L G V+ A L + S +L V ++IT R
Sbjct: 299 RCGSLTMTLTELQHLASGSVLTLRDVVPGQAWLYYGDIALASGDLVDVEGRLGLQITQR 357
>gi|323530324|ref|YP_004232476.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1001]
gi|323387326|gb|ADX59416.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1001]
Length = 454
Score = 47.7 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
+L++ + ++ L + L+ G V+ L +G+ I EL VG
Sbjct: 377 IGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTVG 436
Query: 294 KNYTIRITDRINFD 307
+ IRI + D
Sbjct: 437 DHLGIRILRMAHGD 450
>gi|168820412|ref|ZP_02832412.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205342820|gb|EDZ29584.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|320087296|emb|CBY97061.1| Surface presentation of antigens protein spaO [Salmonella enterica
subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 303
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|32454381|gb|AAP82992.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
Length = 303
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|307725659|ref|YP_003908872.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1003]
gi|307586184|gb|ADN59581.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
sp. CCGE1003]
Length = 511
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRV 292
+ +L++ + ++ L + L+ G V+ L +G+ I EL V
Sbjct: 433 EIGELDLPVQFEVDTVALPLSQLYALRPGYVLELPTPVAEAQLKLVTHGQTIGYGELVTV 492
Query: 293 GKNYTIRITDRINFD 307
G + IRI + D
Sbjct: 493 GDHLGIRILRMAHGD 507
>gi|204928363|ref|ZP_03219563.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|204322685|gb|EDZ07882.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|322614291|gb|EFY11222.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621645|gb|EFY18498.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624506|gb|EFY21339.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628837|gb|EFY25620.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633436|gb|EFY30178.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635988|gb|EFY32696.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639696|gb|EFY36381.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646879|gb|EFY43382.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650647|gb|EFY47052.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654740|gb|EFY51059.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658961|gb|EFY55214.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664472|gb|EFY60666.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668279|gb|EFY64436.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673741|gb|EFY69842.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322677802|gb|EFY73865.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681368|gb|EFY77400.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322683770|gb|EFY79780.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323193841|gb|EFZ79044.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200311|gb|EFZ85393.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203186|gb|EFZ88215.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323205567|gb|EFZ90532.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210078|gb|EFZ94981.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216381|gb|EGA01108.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221128|gb|EGA05559.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323226950|gb|EGA11132.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230766|gb|EGA14884.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234883|gb|EGA18969.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238922|gb|EGA22972.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323241622|gb|EGA25653.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248231|gb|EGA32167.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251185|gb|EGA35058.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256069|gb|EGA39807.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263204|gb|EGA46742.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264293|gb|EGA47799.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271119|gb|EGA54547.1| type III secretion system protein SpaO [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 303
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ T+ Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELETMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|194442226|ref|YP_002042132.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|198245837|ref|YP_002216860.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205353834|ref|YP_002227635.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858153|ref|YP_002244804.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|60415909|sp|P0A1K7|SPAO_SALDU RecName: Full=Surface presentation of antigens protein SpaO
gi|60415910|sp|P0A1K8|SPAO_SALEN RecName: Full=Surface presentation of antigens protein SpaO
gi|973257|gb|AAC43935.1| SpaO [Salmonella enterica subsp. enterica serovar Dublin]
gi|973265|gb|AAC43962.1| SpaO [Salmonella enterica subsp. enterica serovar Gallinarum]
gi|975778|gb|AAC43854.1| SpaO [Salmonella enterica subsp. enterica serovar Enteritidis]
gi|194400889|gb|ACF61111.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|197940353|gb|ACH77686.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205273615|emb|CAR38602.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206709956|emb|CAR34310.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326628943|gb|EGE35286.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 303
Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|300906598|ref|ZP_07124289.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 84-1]
gi|301303010|ref|ZP_07209137.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 124-1]
gi|300401637|gb|EFJ85175.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 84-1]
gi|300841674|gb|EFK69434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 124-1]
gi|315256735|gb|EFU36703.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 85-1]
Length = 315
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|973293|gb|AAC43956.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 35/90 (38%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E + QL V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|975762|gb|AAC43851.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 35/90 (38%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E + QL V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|161615803|ref|YP_001589768.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168261986|ref|ZP_02683959.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|161365167|gb|ABX68935.1| hypothetical protein SPAB_03594 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|205349239|gb|EDZ35870.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|16766197|ref|NP_461812.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167550260|ref|ZP_02344017.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993126|ref|ZP_02574221.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230961|ref|ZP_02656019.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194471466|ref|ZP_03077450.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197264022|ref|ZP_03164096.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|730795|sp|P40699|SPAO_SALTY RecName: Full=Surface presentation of antigens protein SpaO
gi|404290|emb|CAA51924.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|973261|gb|AAC43965.1| SpaO [Salmonella enterica subsp. enterica serovar Senftenberg]
gi|975774|gb|AAC43863.1| SpaO [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16421439|gb|AAL21771.1| surface presentation of antigens [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194457830|gb|EDX46669.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197242277|gb|EDY24897.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205324834|gb|EDZ12673.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328724|gb|EDZ15488.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334615|gb|EDZ21379.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|261248027|emb|CBG25860.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995019|gb|ACY89904.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159450|emb|CBW18968.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913909|dbj|BAJ37883.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321223440|gb|EFX48506.1| Surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323131243|gb|ADX18673.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|332989763|gb|AEF08746.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|218988951|gb|ACL13614.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. salamae serovar Sofia]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 35/90 (38%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E + QL V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|973285|gb|AAC43950.1| SpaO [Salmonella enterica]
gi|973289|gb|AAC43953.1| SpaO [Salmonella enterica]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 35/90 (38%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
Q+ E + QL V ++ + K TL ++ + Q++ +
Sbjct: 209 QHIEEENNTTETAEILPGLNQLPVKLEFVLYRKNVTLAELEAIGQQQLLSLPTNAELNVE 268
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ ANG + + EL ++ + I + ++
Sbjct: 269 IMANGVLLGNGELVQMNDTLGVEIHEWLSE 298
>gi|326624622|gb|EGE30967.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 261
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 185 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 244
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 245 TLGVEIHEWLSE 256
>gi|168242628|ref|ZP_02667560.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168463974|ref|ZP_02697891.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194450652|ref|YP_002046851.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|200389219|ref|ZP_03215831.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|238909658|ref|ZP_04653495.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|194408956|gb|ACF69175.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|195633160|gb|EDX51574.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|199606317|gb|EDZ04862.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205338000|gb|EDZ24764.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|197247897|ref|YP_002147788.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197211600|gb|ACH48997.1| type III secretion apparatus protein, YscQ/HrcQ family [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|56414843|ref|YP_151918.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197363771|ref|YP_002143408.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|32454369|gb|AAP82986.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454371|gb|AAP82987.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454379|gb|AAP82991.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|56129100|gb|AAV78606.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|189490720|gb|ACE00521.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267491|gb|ACF35726.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267493|gb|ACF35727.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267495|gb|ACF35728.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267497|gb|ACF35729.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267499|gb|ACF35730.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267501|gb|ACF35731.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267503|gb|ACF35732.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267505|gb|ACF35733.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267507|gb|ACF35734.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267509|gb|ACF35735.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267511|gb|ACF35736.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267513|gb|ACF35737.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267515|gb|ACF35738.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267517|gb|ACF35739.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267519|gb|ACF35740.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267521|gb|ACF35741.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267523|gb|ACF35742.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267525|gb|ACF35743.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267527|gb|ACF35744.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267529|gb|ACF35745.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267531|gb|ACF35746.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267533|gb|ACF35747.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267535|gb|ACF35748.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267537|gb|ACF35749.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267539|gb|ACF35750.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267541|gb|ACF35751.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267543|gb|ACF35752.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|194267545|gb|ACF35753.1| SpaO [Salmonella enterica subsp. enterica serovar Paratyphi A]
gi|197095248|emb|CAR60799.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|293449186|ref|ZP_06663607.1| type III secretion protein SctQ [Escherichia coli B088]
gi|291322276|gb|EFE61705.1| type III secretion protein SctQ [Escherichia coli B088]
gi|323183416|gb|EFZ68813.1| surface presentation of antigens family protein [Escherichia coli
1357]
Length = 173
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 79 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172
>gi|94496751|ref|ZP_01303326.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
gi|94423764|gb|EAT08790.1| hypothetical protein SKA58_16468 [Sphingomonas sp. SKA58]
Length = 93
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 240 VNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V + ++ L + ++ G V+P + A G+ I + ++ VG +Y +
Sbjct: 25 VQLRFELDQTDVPLSRLQAVQQGGVLPLQDRDGALPVRIIAGGRAIAAGQIVSVGDSYGV 84
Query: 299 RITDRINF 306
I +
Sbjct: 85 LIETVLKE 92
>gi|329942356|ref|ZP_08291166.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
gi|332286998|ref|YP_004421899.1| secretion and cellular translocation protein Q [Chlamydophila
psittaci 6BC]
gi|313847595|emb|CBY16583.1| possible flagellar or type III secretion protein [Chlamydophila
psittaci RD1]
gi|325507164|gb|ADZ18802.1| secretion and cellular translocation protein Q [Chlamydophila
psittaci 6BC]
gi|328815266|gb|EGF85254.1| hypothetical protein G5Q_0041 [Chlamydophila psittaci Cal10]
gi|328914228|gb|AEB55061.1| type III secretion translocase SctQ [Chlamydophila psittaci 6BC]
Length = 371
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287
+ + + T+++ + L G ++ L NG ++
Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLNLSQGSILNLNGIHPSRGVDLVLNGAKVGRG 355
Query: 288 ELGRVGKNYTIRITDR 303
E+ +G IR+ +
Sbjct: 356 EIVSLGDVLGIRVLEV 371
>gi|183600579|ref|ZP_02962072.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
gi|188019856|gb|EDU57896.1| hypothetical protein PROSTU_04165 [Providencia stuartii ATCC 25827]
Length = 308
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL---GR 291
+ + + + + TL ++ ++ G V ++ + AN + I EL G
Sbjct: 230 VNAMTIKLTFVLGQTEITLNELADIQPGAVYSIGENKEREVKVYANKQLIAEGELIYIGE 289
Query: 292 VGKNYTIRITD 302
+ + IT
Sbjct: 290 SDE-LGLEITR 299
>gi|300815708|ref|ZP_07095932.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 107-1]
gi|300531637|gb|EFK52699.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 107-1]
Length = 173
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 79 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172
>gi|16761668|ref|NP_457285.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143152|ref|NP_806494.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213052435|ref|ZP_03345313.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213419312|ref|ZP_03352378.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213425707|ref|ZP_03358457.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580301|ref|ZP_03362127.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213649909|ref|ZP_03379962.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213853009|ref|ZP_03382541.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289829393|ref|ZP_06547005.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|2494557|sp|Q56022|SPAO_SALTI RecName: Full=Surface presentation of antigens protein SpaO
gi|25354379|pir||AG0851 surface presentation of antigens protein (associated with type III
secretion and virulence) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|975770|gb|AAC43860.1| SpaO [Salmonella enterica subsp. enterica serovar Typhi]
gi|16503969|emb|CAD05998.1| surface presentation of antigens protein (associated with type III
secretion and virulence) [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138785|gb|AAO70354.1| antigen presentation protein SpaO [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|32454373|gb|AAP82988.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454375|gb|AAP82989.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
gi|32454383|gb|AAP82993.1| invasion protein SpaO [Salmonella enterica subsp. enterica serovar
Paratyphi A]
Length = 303
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|284007399|emb|CBA72809.1| type III secretion apparatus protein YscQ,HrcQ,SpaO [Arsenophonus
nasoniae]
Length = 292
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 30/73 (41%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + ++ + +K L ++ + G+V+P + + ANG I + +
Sbjct: 220 DDIPITLEYILQKRKIPLLELENIFQGKVLPCDLAAENNVKIVANGVLIAKGNIIWIEDR 279
Query: 296 YTIRITDRINFDQ 308
+ IT + ++
Sbjct: 280 LGVEITHLFHNEK 292
>gi|85058546|ref|YP_454248.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
gi|84779066|dbj|BAE73843.1| type III secretion apparatus SpaO [Sodalis glossinidius str.
'morsitans']
Length = 304
Score = 47.3 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GK 294
++ V ++ + L ++ L+ G V + + N + + EL + +
Sbjct: 227 SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGELVTLEDE 286
Query: 295 NYTIRIT 301
+ IT
Sbjct: 287 RLAVEIT 293
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
L +P E L+ + + + + + D+V
Sbjct: 116 LALPGEDLIVHVADWPKQAFPQAQTASAWLKRL-------PFELRCVLGCSRLAALDLVR 168
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCE 288
L G ++ L+ NG+ I+SC
Sbjct: 169 LDTGDLLLITRP---ELHLAVNGRAIFSCH 195
>gi|227114169|ref|ZP_03827825.1| type III secretion protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 385
Score = 46.9 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 26/79 (32%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
D L V + R TL ++ L G V+ A L + S
Sbjct: 287 RDNVTESLPPLPVTLHLRCGSLTMTLAELQHLASGSVLTLRDVVPGQAWLYHGDIALASG 346
Query: 288 ELGRVGKNYTIRITDRINF 306
+L V ++IT R +
Sbjct: 347 DLVDVEGRLGLQITQRFSS 365
>gi|126738562|ref|ZP_01754267.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
gi|126720361|gb|EBA17067.1| flagellar motor switch protein FliN [Roseobacter sp. SK209-2-6]
Length = 98
Score = 46.9 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITD 302
+ ++D+V L ++ R + L + + +L G +R+T+
Sbjct: 30 GKARPLIRDLVGLGENAILTLDKRVEDPVDLYVGDRLVARGQLEEMDGEQAGQLAVRLTE 89
Query: 303 R 303
Sbjct: 90 I 90
>gi|84785904|gb|ABC62091.1| secretion and cellular translocation protein Q [Chlamydophila
psittaci]
Length = 371
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287
+ + + T+++ + L G ++ L NG ++
Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLNLSQGSILNLNGIHPSRGVDLVLNGAKVGRG 355
Query: 288 ELGRVGKNYTIRITDR 303
E+ +G IR+ +
Sbjct: 356 EIVSLGDVLGIRVLEV 371
>gi|85059282|ref|YP_454984.1| type III secretion system protein [Sodalis glossinidius str.
'morsitans']
gi|84779802|dbj|BAE74579.1| putative type III secretion apparatus [Sodalis glossinidius str.
'morsitans']
Length = 350
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + + T+ D+ L +G V+P R AIL + + I EL
Sbjct: 269 LNALPQQVRVDVGELSLTVGDLRRLAVGDVVPVTGRFTPYAILRLHNQTIGQGELVSCDG 328
Query: 295 NYTIRITD 302
+RIT
Sbjct: 329 ALLVRITR 336
>gi|254255056|ref|ZP_04948373.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
gi|124899701|gb|EAY71544.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
Length = 311
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 25/75 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + ID ++ T++ DV G +P + ++ G + EL +
Sbjct: 236 VSDLPIRIDFVLHRCTTSVSDVDAFAHGTFLPLAADAERRVEITTGGTVLAVGELVELDG 295
Query: 295 NYTIRITDRINFDQK 309
+ I +
Sbjct: 296 RLGVEIHQVARARRD 310
>gi|159045806|ref|YP_001534600.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
gi|157913566|gb|ABV94999.1| flagellar motor switch protein FliN [Dinoroseobacter shibae DFL 12]
Length = 89
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + T+++++ L+ V+ R + L I L
Sbjct: 12 LVGVPIALSVSVGQAHPTVRELLALEKDAVLLLDKRIEDPVELYVGTHLIARGVLEEDAD 71
Query: 295 --NYTIRITDRINFDQ 308
++R+T+ I+ ++
Sbjct: 72 SHRLSVRLTEVISPER 87
>gi|94987608|ref|YP_595541.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731857|emb|CAJ55220.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 368
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 26/70 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L++ + + + T++++ L G + L NGK I L +
Sbjct: 298 VSGLDLPVVFELERQFMTVQNIGLLAPGYTFALSVDVQAPVTLRVNGKAIGVGRLVDLNG 357
Query: 295 NYTIRITDRI 304
+ +++ +
Sbjct: 358 SLGVQVVQVM 367
>gi|153215435|ref|ZP_01950019.1| conserved domain protein [Vibrio cholerae 1587]
gi|153827945|ref|ZP_01980612.1| conserved domain protein [Vibrio cholerae 623-39]
gi|124114729|gb|EAY33549.1| conserved domain protein [Vibrio cholerae 1587]
gi|148876526|gb|EDL74661.1| conserved domain protein [Vibrio cholerae 623-39]
Length = 71
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 30/66 (45%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + ID I TL +++ L+ G ++ ++ +L + + I + L ++ +
Sbjct: 1 MKIAIDVVIAHCSMTLDELLHLQKGNMVKVEDFVQSAVMLKSGNELIATGTLIKIDDQFA 60
Query: 298 IRITDR 303
+ I +
Sbjct: 61 VSIDNV 66
>gi|300898066|ref|ZP_07116434.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 198-1]
gi|300358204|gb|EFJ74074.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 198-1]
Length = 239
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 164 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 223
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 224 LGVEIHSWLSGNNNV 238
>gi|320202507|gb|EFW77077.1| surface presentation of antigens protein SpaO [Escherichia coli
EC4100B]
Length = 173
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 79 KKNESEIYDENDEQMIHSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 138
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172
>gi|51103201|gb|AAT96342.1| HrcQ-like protein [Pseudomonas viridiflava]
Length = 354
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 206 LLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
L + + S +++ + F L++ + R +L + +L +G V+
Sbjct: 257 LDDIDEHDSAHEADSAEANDNDLQRFN----DLSMALTVRAGNLSLSLGQLRSLAVGSVL 312
Query: 266 PFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
F A+L + + EL V ++IT
Sbjct: 313 TFNGCTPGHAMLHHGERVLAHGELVDVEGRLGLQITRM 350
>gi|301027455|ref|ZP_07190792.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 69-1]
gi|300394963|gb|EFJ78501.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli MS 69-1]
Length = 315
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
I S ++ I+ F L V I+ + K L ++ L ++I L
Sbjct: 219 DIKKSESEINDENDYQQINSFE----DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPE 274
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NG EL V + I ++ +
Sbjct: 275 AEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 314
>gi|238786391|ref|ZP_04630319.1| Type III secretion system apparatus protein [Yersinia bercovieri
ATCC 43970]
gi|238712699|gb|EEQ04783.1| Type III secretion system apparatus protein [Yersinia bercovieri
ATCC 43970]
Length = 305
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + I L ++ L +GQ + + NG+ + S L R G+
Sbjct: 235 LDHLPQTLVMEIGRIAVPLGEIKQLAVGQTLNCQTSVYGEVNIRLNGQPVGSGSLLRCGE 294
Query: 295 NYTIRITD 302
+ +RI
Sbjct: 295 DLVVRIDQ 302
>gi|153847524|ref|ZP_01993940.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus
AQ3810]
gi|149744726|gb|EDM56194.1| acetolactate synthase II large subunit [Vibrio parahaemolyticus
AQ3810]
Length = 237
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 32/180 (17%)
Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL--NQCISTTQESS 157
++ L + GA+ E L+ + +L +R I L E
Sbjct: 7 DTQTLVKLADRFYGANTERSVAT----LTASDLRLQERISRIIIGWLAPQDMWEA-CEYE 61
Query: 158 PNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
+ +N+T E S L + +
Sbjct: 62 ------------------APRGIGLCVQLNITFEGYQGSMYLKLDTHLIQTLIEQL---- 99
Query: 218 NKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPF-LHREKTCAI 276
DL +PF R V ++ ++ K L DVV+LK ++P
Sbjct: 100 --ELQSDVDLYEPFCRSLESTPVRLNVVLSKKTMALSDVVSLKPDDIMPIYDALYDGGVE 157
>gi|120586839|ref|YP_961184.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120564253|gb|ABM29996.1| type III secretion system apparatus protein YscQ/HrcQ
[Desulfovibrio vulgaris DP4]
Length = 475
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 2/96 (2%)
Query: 209 TTLISLSSQNKSENQSEDLIDPFARKTYQL--NVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ + S+ V+I + + L D+ L G
Sbjct: 317 VLDATPAPNTPESPMSDQQTPEVPAGLDTAALEVDIVFELERRTMKLNDLAALAPGYTFA 376
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
L G+ I L + +++
Sbjct: 377 LGTDPLAPVTLRVQGRNIGRGRLVDLDGTPGVQVLH 412
>gi|284922804|emb|CBG35892.1| type III secretion system protein [Escherichia coli 042]
Length = 315
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 211 LISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
I S ++ I+ F L V I+ + K L ++ L ++I L
Sbjct: 219 DIKKSESEINDENDYQQINSFE----DLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPE 274
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ + NG EL V + I ++ +
Sbjct: 275 AEKNIEIRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 314
>gi|325261315|ref|ZP_08128053.1| chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium
sp. D5]
gi|324032769|gb|EGB94046.1| chemotaxis protein CheC, inhibitor of MCP methylation [Clostridium
sp. D5]
Length = 203
Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 15/160 (9%), Positives = 42/160 (26%), Gaps = 9/160 (5%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK----ENFVFSQASL 88
I S LG + M+ ++I + + ++ + S
Sbjct: 13 DILSELGNIGTGNAVSSLSAMMERPIEIGIPNIRLVRYQDVFESLGIQEALQTGILIQVK 72
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
F +L+ +LG + + L +EK L + +
Sbjct: 73 GQLQGMFLFLMDEAFTWAVLKTMLGGADHCLT-----CLDEMEKSLLSELGNIMCGSYIR 127
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNM 188
++ ++ + + ++ ++
Sbjct: 128 ALAQLTGMETDVSVPDMCIDMGGAILGVPLARHLKVSDSI 167
>gi|110677671|ref|YP_680678.1| flagellar motor switch protein FliN, putative [Roseobacter
denitrificans OCh 114]
gi|109453787|gb|ABG29992.1| flagellar motor switch protein FliN, putative [Roseobacter
denitrificans OCh 114]
Length = 97
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG---- 293
+ + + + + ++D+VTL V+ + L + I L
Sbjct: 21 VPIEVTVCVGKARPLIRDLVTLGENAVLSLDKSVEDPVDLYIGDRLIARGMLEEKDDDQS 80
Query: 294 KNYTIRITDRIN 305
+R+T+ I+
Sbjct: 81 GQLIVRLTEVID 92
>gi|330809245|ref|YP_004353707.1| flagellar motor switch protein FliM-like protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327377353|gb|AEA68703.1| Putative flagellar motor switch protein FliM-like protein
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 243
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAIL-SANGKEIYSCELG 290
+ V + R+ L ++ ++ L+ G + + A G I L
Sbjct: 170 KQALGNARVKLSVRLPLASLSIGEMRDLRPGDTLRASALLADPVSVQLAEGPVIAGGYLA 229
Query: 291 RVGKNYTIRI 300
+ +++
Sbjct: 230 KQHGQVAVQL 239
>gi|229827373|ref|ZP_04453442.1| hypothetical protein GCWU000182_02761 [Abiotrophia defectiva ATCC
49176]
gi|229788311|gb|EEP24425.1| hypothetical protein GCWU000182_02761 [Abiotrophia defectiva ATCC
49176]
Length = 208
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 6/150 (4%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL---- 88
+ LG + ++ VD++ F + L
Sbjct: 15 DVLRELGNIGAGNATTALSSMLNTKVDMNVPKVDLLGFDELHEIMGGAETIVVGILVTLD 74
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ L++ L G T P+ L + K IS
Sbjct: 75 ADIDGMMMFMMKTKSAFGLVDILFGRPVGTTPEDA--ELDEMSLSALKELGNIISGAYIS 132
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
+S+ + N Y + +
Sbjct: 133 SLSSMTNLTINQSIPYLSIDMAGAILSVPA 162
>gi|329850252|ref|ZP_08265097.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
C19]
gi|328840567|gb|EGF90138.1| flagellar motor switch protein fliN [Asticcacaulis biprosthecum
C19]
Length = 71
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
+ ++ ++ + G VIP RE + AN + E+ + +I +T
Sbjct: 3 LGRSVLPMQQLLRMGRGAVIPLDAREHDEVWILANNHPVARGEIQIFEEKISIVVTK 59
>gi|182440970|dbj|BAG24095.1| HrcQ [Pseudomonas cichorii]
Length = 354
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 27/72 (37%)
Query: 232 ARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGR 291
+ L + + R +L + +L +G V+ F A+L + + EL
Sbjct: 279 MERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGHAMLFHGERALAHGELVD 338
Query: 292 VGKNYTIRITDR 303
V ++IT
Sbjct: 339 VEGRLGLQITRM 350
>gi|262274302|ref|ZP_06052113.1| putative Type III secretion protein Spa33 [Grimontia hollisae CIP
101886]
gi|262220865|gb|EEY72179.1| putative Type III secretion protein Spa33 [Grimontia hollisae CIP
101886]
Length = 71
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 28/64 (43%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ + +D I TL ++ L G+++ ++ +L + + + + L +V Y
Sbjct: 1 MKIALDVVIAHCNLTLDELNQLNKGKMLKIDDFVQSEVMLKSGNELVATGRLIKVDDQYA 60
Query: 298 IRIT 301
I +
Sbjct: 61 ITVD 64
>gi|324119903|gb|EGC13782.1| type III secretion protein SctQ [Escherichia coli E1167]
Length = 134
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 40 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 99
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 100 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 133
>gi|51103118|gb|AAT96261.1| HrcQ-like protein [Pseudomonas viridiflava]
gi|51103160|gb|AAT96302.1| HrcQ-like protein [Pseudomonas viridiflava]
Length = 354
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
++ L++ + R +L + +L +G V+ F A+L + + EL V
Sbjct: 280 QRFNDLSMALTVRAGNLSLSLGQLRSLAVGSVLTFNGCTPGHAMLHHGERVLAHGELVDV 339
Query: 293 GKNYTIRITDR 303
++IT
Sbjct: 340 EGRLGLQITRM 350
>gi|289810465|ref|ZP_06541094.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 223
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 147 LNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMND 206
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 207 TLGVEIHEWLSE 218
>gi|293412213|ref|ZP_06654936.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B354]
gi|291468984|gb|EFF11475.1| YscQ/HrcQ family type III secretion apparatus protein [Escherichia
coli B354]
Length = 315
Score = 46.6 bits (109), Expect = 0.006, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 300 LGVEIHSWLSGNNNV 314
>gi|330957489|gb|EGH57749.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 135
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 1/100 (1%)
Query: 208 KTTLISLSSQNKSENQSEDLIDPFAR-KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ + + E + L + + R + TL ++ L G V+
Sbjct: 35 PDDEYAEQASGYAPADDERQDEQDESPALDSLELELTLRCGELRLTLAELRRLDAGSVLE 94
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
A L + + EL V ++IT +
Sbjct: 95 VSGVAPGHATLCHGEQVVAEGELVDVEGRLGLQITRLVTR 134
>gi|218706363|ref|YP_002413882.1| surface presentation of antigens protein SpaO [Escherichia coli
UMN026]
gi|298382090|ref|ZP_06991687.1| type III secretion inner membrane protein [Escherichia coli
FVEC1302]
gi|331674343|ref|ZP_08375103.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli TA280]
gi|218433460|emb|CAR14362.1| Type III secretion apparatus protein [Escherichia coli UMN026]
gi|298277230|gb|EFI18746.1| type III secretion inner membrane protein [Escherichia coli
FVEC1302]
gi|331068437|gb|EGI39832.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli TA280]
Length = 315
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 300 LGVEIHSWLSGNNNV 314
>gi|188534037|ref|YP_001907834.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029079|emb|CAO96947.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 309
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT---YQLNVNIDTRI 246
I++ + + + +L ED K L+V I+ +
Sbjct: 177 IQHQSGYLQIGSKKIFILDFVDKKEIVVLDKLTDYEDHYRDEEEKLFSWSDLSVEIEFVL 236
Query: 247 NLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG-KNYTIRITDR 303
+ K TL ++ + G ++P + + N K EL + N + I
Sbjct: 237 DSKSYTLTELDAIHPGMILPLNQDAEKRVKIYLNKKFFARGELVALESGNLAVEINQI 294
>gi|975766|gb|AAC43857.1| SpaO [Salmonella enterica subsp. enterica serovar Typhisuis]
Length = 303
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
QL V ++ + K TL ++ + Q++ + + ANG + + EL ++
Sbjct: 227 LNQLPVKLEFVLYRKNVTLAELEVMGQQQLLSLPTNAELNVEIMANGVLLGNGELVQMND 286
Query: 295 NYTIRITDRINF 306
+ I + ++
Sbjct: 287 TLGVEIHEWLSE 298
>gi|331678848|ref|ZP_08379522.1| typeIII secretion apparatus protein [Escherichia coli H591]
gi|331073678|gb|EGI44999.1| typeIII secretion apparatus protein [Escherichia coli H591]
Length = 134
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 30/94 (31%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L ++ L ++I L +
Sbjct: 40 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLPESEKNIK 99
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 100 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 133
>gi|62184686|ref|YP_219471.1| type III secretion system protein [Chlamydophila abortus S26/3]
gi|62147753|emb|CAH63497.1| possible flagellar or type III secretion protein [Chlamydophila
abortus S26/3]
Length = 371
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 233 RKTYQLNVN----IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSC 287
+ + + T+++ + L G ++ L NG ++
Sbjct: 296 EALPAAPLPGNYKLVAEASRYSLTVEEFLHLSQGSILNLNGIHPSRGVDLILNGAKVGRG 355
Query: 288 ELGRVGKNYTIRITDR 303
E+ +G IR+ +
Sbjct: 356 EIVSLGDVLGIRVLEV 371
>gi|15042141|gb|AAK81922.1|AF292566_6 RscQB [Pseudomonas fluorescens]
Length = 133
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 3/119 (2%)
Query: 186 MNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTR 245
+ MT+ A + I + + + E ++ + ++ R
Sbjct: 15 LTMTVGRCALTLTSIEETSVDEEFIAPHYAGEEDDEPVTDVFGHEPFDELSMA---LNVR 71
Query: 246 INLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
TL ++ L G V+ A L + I +L V ++++ +
Sbjct: 72 CGTLNLTLGELRNLAPGAVLGIAGYAPGMAGLYYGDRPIGQGQLVEVDGRLGLQLSRVM 130
>gi|323978517|gb|EGB73599.1| YscQ/HrcQ family protein type III secretion lipoprotein
[Escherichia coli TW10509]
Length = 315
Score = 46.2 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 300 LGVEIHSWLSGNNNV 314
>gi|167573309|ref|ZP_02366183.1| type III secretion system protein BsaV [Burkholderia oklahomensis
C6786]
Length = 320
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ + ++ T+ + + G V+P + ANG+ EL +VG+
Sbjct: 242 IDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGE 300
Query: 295 NYTIRIT 301
+ +
Sbjct: 301 QLAVEVK 307
>gi|323966656|gb|EGB62088.1| YscQ/HrcQ family protein type III secretion lipoprotein
[Escherichia coli M863]
gi|327251617|gb|EGE63303.1| type III secretion apparatus protein, YscQ/HrcQ family [Escherichia
coli STEC_7v]
Length = 315
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 240 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 299
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 300 LGVEIHSWLSGNNNV 314
>gi|331669597|ref|ZP_08370443.1| typeIII secretion apparatus protein [Escherichia coli TA271]
gi|331063265|gb|EGI35178.1| typeIII secretion apparatus protein [Escherichia coli TA271]
Length = 113
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 19 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPESEKNIE 78
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 79 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 112
>gi|51103053|gb|AAT96199.1| HrcQb [Pseudomonas viridiflava]
Length = 186
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 218 NKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ SE ++ L +++ R TL + L G ++ A
Sbjct: 95 HNSETADDEQSQAVTEPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHA 154
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 155 TLCHGERVVAEGELVDVDGRLGLQITRMVTQ 185
>gi|167566199|ref|ZP_02359115.1| type III secretion system protein BsaV [Burkholderia oklahomensis
EO147]
Length = 326
Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V ++ + ++ T+ + + G V+P + ANG+ EL +VG+
Sbjct: 248 IDALPVTLEFVLQDERVTVAQLASCHPGLVLPVRGAPGE-VTIRANGRPFGCGELIQVGE 306
Query: 295 NYTIRIT 301
+ +
Sbjct: 307 QLAVEVK 313
>gi|293406355|ref|ZP_06650281.1| type III secretion inner membrane protein [Escherichia coli
FVEC1412]
gi|291426361|gb|EFE99393.1| type III secretion inner membrane protein [Escherichia coli
FVEC1412]
Length = 308
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 233 EDLPVKIEFVLGKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 292
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 293 LGVEIHSWLSGNNNV 307
>gi|218674848|ref|ZP_03524517.1| type III secretion system translocation protein [Rhizobium etli
GR56]
gi|327192840|gb|EGE59766.1| type III secretion system translocation protein [Rhizobium etli
CNPAF512]
Length = 339
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 24/71 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + L+ + T+ G V + A G+ I E+ V
Sbjct: 269 VDSIPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328
Query: 295 NYTIRITDRIN 305
+R+T +
Sbjct: 329 LSAVRVTALHD 339
>gi|299822274|ref|ZP_07054160.1| flagellar motor switch protein [Listeria grayi DSM 20601]
gi|299815803|gb|EFI83041.1| flagellar motor switch protein [Listeria grayi DSM 20601]
Length = 82
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 22/67 (32%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++ + ID + + +++ LK G + + G I E+
Sbjct: 5 NEIPLQIDFELGRTNQQVGNLLDLKKGTIFRLECSTANVVKIVIAGTCIGYGEILTKDGK 64
Query: 296 YTIRITD 302
++I
Sbjct: 65 LFVKIVK 71
>gi|268592376|ref|ZP_06126597.1| putative surface presentation of antigens protein [Providencia
rettgeri DSM 1131]
gi|291312162|gb|EFE52615.1| putative surface presentation of antigens protein [Providencia
rettgeri DSM 1131]
Length = 310
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 182 TTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVN 241
E + L+ P+ Q ++N+
Sbjct: 189 VLARFQKQDEGLLMIEELVAPESEEEFVFPEEDEMQEIVRP----------FNVKEMNIK 238
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN--YTIR 299
+ + T+ ++ ++ G + ++ + AN + I EL +G + +
Sbjct: 239 LTFVLGHSDITVDELSKMEPGYIYSIGENKEREVKVYANKQFIAEGELIYIGNSDELGLE 298
Query: 300 ITDRINFDQKSL 311
IT ++ K +
Sbjct: 299 ITHVVSLGDKRV 310
>gi|76574804|gb|ABA47278.1| HrcQ [Pseudomonas cichorii]
Length = 354
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ L + + R +L + +L +G V+ F A+L + + EL V
Sbjct: 280 ERFNDLALALTLRAGNLSLSLGQLRSLSVGSVLTFNGCAPGNAMLFHGERALAHGELVDV 339
Query: 293 GKNYTIRITDR 303
++IT
Sbjct: 340 EGRLGLQITRM 350
>gi|21492904|ref|NP_659979.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
gi|21467329|gb|AAM54992.1| type III secretion system translocation protein [Rhizobium etli CFN
42]
Length = 339
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 24/71 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + L+ + T+ G V + A G+ I E+ V
Sbjct: 269 VDSIPIKLVFDAGRLELPLRTLETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328
Query: 295 NYTIRITDRIN 305
+R+T +
Sbjct: 329 LSAVRVTALHD 339
>gi|207724581|ref|YP_002254978.1| hrp protein hrcq [Ralstonia solanacearum MolK2]
gi|206589803|emb|CAQ36764.1| hrp conserved protein hrcq [Ralstonia solanacearum MolK2]
Length = 362
Score = 45.8 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVG 293
QL V + + + L ++ L+ V+ + + L +G+ + +L VG
Sbjct: 286 LEQLEVPVHLELAVMGMPLAELAALQRQHVLTLPVKIRDVTVRLVCHGQTLGHGQLVAVG 345
Query: 294 KNYTIRI 300
+ ++I
Sbjct: 346 EQLGLQI 352
>gi|94968672|ref|YP_590720.1| surface presentation of antigens (SPOA) protein [Candidatus
Koribacter versatilis Ellin345]
gi|94550722|gb|ABF40646.1| surface presentation of antigens (SPOA) protein [Candidatus
Koribacter versatilis Ellin345]
Length = 109
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 220 SENQSEDLIDPFARKTYQL----NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
+ + + + + + T++ ++ L+ G V+ + T
Sbjct: 21 QNESGAKQSEDIRSEGMNSFRHLQCTVTLELPVPRFTVRQMLELRPGAVVDTCWSQATDL 80
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITD 302
L NG + E V Y +R+T+
Sbjct: 81 PLRVNGALLAWSEFEVVDNRYGVRLTE 107
>gi|330940700|gb|EGH43711.1| flagellar motor switch protein FliM [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 98
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 11/78 (14%)
Query: 5 SIHKNTSP-----LHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVD 59
N+ P R+ + + ++ + D
Sbjct: 25 QTDNNSEPGSVKSYDLTSQDRIVRG------RMPTLEMINEQFARYTRISMFNLLRRSAD 78
Query: 60 ISYTSCQSGKFSHIIHSF 77
++ Q KF +HS
Sbjct: 79 VAVGGVQVMKFGEYVHSL 96
>gi|307310519|ref|ZP_07590167.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
gi|306909414|gb|EFN39909.1| surface presentation of antigens (SPOA) protein [Escherichia coli
W]
Length = 113
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 19 KKNESEIYDENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIE 78
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 79 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 112
>gi|34500876|gb|AAQ73904.1| HrcQ [Pectobacterium carotovorum subsp. carotovorum]
Length = 379
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 25/75 (33%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
D L V + R TL ++ L G V+ + A L + S
Sbjct: 281 SDNVTENLPPLPVTLHIRCGSLTMTLTELQHLASGSVLTLRDVVQGQAWLYHGDIALASG 340
Query: 288 ELGRVGKNYTIRITD 302
+L V ++IT
Sbjct: 341 DLVDVEGRLGLQITQ 355
>gi|146305086|ref|YP_001185551.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
gi|145573287|gb|ABP82819.1| surface presentation of antigens (SPOA) protein [Pseudomonas
mendocina ymp]
Length = 133
Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 200 IIPQETLLKTTLISLSSQN---KSENQSEDLIDPFARKTYQLNVNIDTRI--NLKKTTLK 254
+P+ + + L Q + E+ S A ++ + + ++
Sbjct: 21 ALPEGFEERPGEMHLEGQEFAPQDEHASAVEPQQMAALGSIAHLPLQLTLRCGQLTLSVD 80
Query: 255 DVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ L G V+ A L + + EL V ++IT
Sbjct: 81 QLRQLGSGSVLEIHGVAPGHATLCHGERVVGEGELVDVDGRLGLQITRM 129
>gi|28901204|ref|NP_800859.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
RIMD 2210633]
gi|153835872|ref|ZP_01988539.1| conserved domain protein [Vibrio parahaemolyticus AQ3810]
gi|260362762|ref|ZP_05775631.1| conserved domain protein [Vibrio parahaemolyticus K5030]
gi|260880050|ref|ZP_05892405.1| conserved domain protein [Vibrio parahaemolyticus AN-5034]
gi|260895167|ref|ZP_05903663.1| conserved domain protein [Vibrio parahaemolyticus Peru-466]
gi|28809717|dbj|BAC62692.1| putative Type III secretion protein Spa33 [Vibrio parahaemolyticus
RIMD 2210633]
gi|149750626|gb|EDM61371.1| conserved domain protein [Vibrio parahaemolyticus AQ3810]
gi|308085747|gb|EFO35442.1| conserved domain protein [Vibrio parahaemolyticus Peru-466]
gi|308092016|gb|EFO41711.1| conserved domain protein [Vibrio parahaemolyticus AN-5034]
gi|308112219|gb|EFO49759.1| conserved domain protein [Vibrio parahaemolyticus K5030]
Length = 71
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 10/61 (16%), Positives = 29/61 (47%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ V +D I + +L ++ L G+++ ++ +L + + + + +L +V Y
Sbjct: 1 MKVELDVVIAHCQLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLFKVDDQYA 60
Query: 298 I 298
+
Sbjct: 61 V 61
>gi|82795277|gb|ABB91646.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tagetis]
Length = 135
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
I Q++ + S L +++ R + TL ++ L G V+
Sbjct: 41 EPDEPIGPDEQDEQDEHSPL------SAVDSLPLDLTLRCGELRLTLAELRRLDAGTVLE 94
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
A L + + EL V ++IT
Sbjct: 95 VSGIAPGYATLCHGERVVAEGELVDVDGRLGLQITR 130
>gi|29839806|ref|NP_828912.1| type III secretion system protein [Chlamydophila caviae GPIC]
gi|29834153|gb|AAP04790.1| type III secretion translocase SctQ [Chlamydophila caviae GPIC]
Length = 371
Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
+ + T+++ + L G V+ F L NG ++ E+ +G IR+
Sbjct: 309 LVAEASRYSLTVEEFLKLTQGSVLNFNGVHPSRGVDLILNGAKVGRGEIVSLGDVLGIRV 368
Query: 301 TDR 303
+
Sbjct: 369 LEV 371
>gi|51102998|gb|AAT96145.1| HrcQb [Pseudomonas viridiflava]
Length = 186
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 218 NKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
SE ++ L +++ R TL + L G ++ A
Sbjct: 95 QNSETADDEQSQAVTEPAAFESLTLDLTLRCGELTLTLAALRRLDAGTILEVAGIAPGHA 154
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 155 TLCHGERVVAEGELVDVDGRLGLQITRMVTQ 185
>gi|188992473|ref|YP_001904483.1| HrcQ protein [Xanthomonas campestris pv. campestris str. B100]
gi|167734233|emb|CAP52441.1| HrcQ protein [Xanthomonas campestris pv. campestris]
Length = 335
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 45/164 (27%), Gaps = 10/164 (6%)
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + L + + + + + + IP +L
Sbjct: 166 PAWLSALRVTTRLRIGQRTATAALLQSLRPGDVLLHALATAPV--RSGELLWGIPGGAVL 223
Query: 208 --KTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
L ++ + + A L + + ++ +L + L+
Sbjct: 224 RAPVRLTLQQMILETAPTMQHDMPASDSSSSATDVAALELPVQLEVDQLALSLSVLSGLQ 283
Query: 261 IGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
GQ++ L G+ I L VG++ ++I
Sbjct: 284 PGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 327
>gi|21230684|ref|NP_636601.1| HrcQ protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66769321|ref|YP_244083.1| HrcQ protein [Xanthomonas campestris pv. campestris str. 8004]
gi|21112272|gb|AAM40525.1| HrcQ protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574653|gb|AAY50063.1| HrcQ protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 304
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 45/164 (27%), Gaps = 10/164 (6%)
Query: 148 QCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLL 207
+ + L + + + + + + IP +L
Sbjct: 135 PAWLSALRVTTRLRIGQRTATAALLQSLRPGDVLLHALATAPV--RSGELLWGIPGGAVL 192
Query: 208 --KTTLISLSSQNKSENQSEDLIDPF-----ARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
L ++ + + A L + + ++ +L + L+
Sbjct: 193 RAPVRLTLQQMILETAPTMQHDMPASDSSSSATDVAALELPVQLEVDQLALSLSVLSGLQ 252
Query: 261 IGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRITDR 303
GQ++ L G+ I L VG++ ++I
Sbjct: 253 PGQILELSVPVDQADIRLVVYGQTIGIGRLLAVGEHLGVQILSM 296
>gi|238764051|ref|ZP_04625006.1| Type III secretion system apparatus protein [Yersinia kristensenii
ATCC 33638]
gi|238697722|gb|EEP90484.1| Type III secretion system apparatus protein [Yersinia kristensenii
ATCC 33638]
Length = 292
Score = 45.4 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 23/69 (33%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
+ QL + I L D+ L +GQ + + +G+ + S L
Sbjct: 218 QLEQLPQTLIMEIGRLTLPLSDIKQLDVGQTLACQTHLYGEVNIRLHGQIVGSGSLLCCD 277
Query: 294 KNYTIRITD 302
+RI
Sbjct: 278 GQMVVRIDQ 286
>gi|227357592|ref|ZP_03841945.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
gi|227162302|gb|EEI47306.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
Length = 309
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 23/70 (32%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + K ++ + L G+ + ANGK I EL ++
Sbjct: 234 NSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKI 293
Query: 293 GKNYTIRITD 302
+ I
Sbjct: 294 KDMLAVEINK 303
>gi|115360603|ref|YP_777740.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
gi|115285931|gb|ABI91406.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria AMMD]
Length = 326
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRV 292
+ QL++ + I+ + + L+ G V+ L G+ I EL V
Sbjct: 249 EISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSV 308
Query: 293 GKNYTIRITD 302
G + +R+
Sbjct: 309 GDHLGVRLVQ 318
>gi|197286518|ref|YP_002152390.1| type III secretion system protein [Proteus mirabilis HI4320]
gi|194684005|emb|CAR45295.1| type III secretion system protein [Proteus mirabilis HI4320]
Length = 309
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 23/70 (32%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ + I + K ++ + L G+ + ANGK I EL ++
Sbjct: 234 NSIGAIPITISFLLANKTLSIDQLEELAPGKKFILPDNAIRHINILANGKAIAQGELIKI 293
Query: 293 GKNYTIRITD 302
+ I
Sbjct: 294 KDMLAVEINK 303
>gi|330444061|ref|YP_004377047.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
E58]
gi|328807171|gb|AEB41344.1| flagellar motor switch domain/YscQ family [Chlamydophila pecorum
E58]
Length = 371
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 22/62 (35%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + + + + L G ++ + +G ++ E+ +G IR+
Sbjct: 310 LVAEVARYGLAVDEFLKLAPGSILNLGVHPSRGVDIILDGAKVGRGEILALGDVLGIRVL 369
Query: 302 DR 303
+
Sbjct: 370 EV 371
>gi|254502219|ref|ZP_05114370.1| putative surface presentation of antigens protein [Labrenzia
alexandrii DFL-11]
gi|222438290|gb|EEE44969.1| putative surface presentation of antigens protein [Labrenzia
alexandrii DFL-11]
Length = 88
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 30/74 (40%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
++NV+I + + ++ + G VI E + AN + ++ +G+
Sbjct: 5 DEINVDISVVLGENHMPVHQLLRMGRGAVIDLDVDEDDDVKIYANNTLVAKGQVVLLGER 64
Query: 296 YTIRITDRINFDQK 309
I IT+ + +
Sbjct: 65 IGISITEVLMRPPE 78
>gi|149926087|ref|ZP_01914350.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
gi|149825375|gb|EDM84586.1| hypothetical protein LMED105_03525 [Limnobacter sp. MED105]
Length = 359
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 24/67 (35%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ ++ K ++ +++ G +I L G I EL +
Sbjct: 293 QIELEIHAGKTKILFNELCSVQEGTLIELREHALPMVTLCVMGSPILEGELVHFQDQLMV 352
Query: 299 RITDRIN 305
++T R++
Sbjct: 353 QVTKRLD 359
>gi|229515157|ref|ZP_04404617.1| hypothetical protein VCB_002814 [Vibrio cholerae TMA 21]
gi|229529205|ref|ZP_04418595.1| hypothetical protein VCG_002298 [Vibrio cholerae 12129(1)]
gi|254285289|ref|ZP_04960254.1| conserved domain protein [Vibrio cholerae AM-19226]
gi|71480614|gb|AAZ32236.1| VcsQ2 [Vibrio cholerae non-O1/non-O139]
gi|150424561|gb|EDN16497.1| conserved domain protein [Vibrio cholerae AM-19226]
gi|229332979|gb|EEN98465.1| hypothetical protein VCG_002298 [Vibrio cholerae 12129(1)]
gi|229347862|gb|EEO12821.1| hypothetical protein VCB_002814 [Vibrio cholerae TMA 21]
Length = 71
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 10/64 (15%), Positives = 29/64 (45%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ V +D I +L ++ L G+++ ++ +L + + + + +L +V Y
Sbjct: 1 MKVALDVVIAHCNLSLDELNQLSKGKMVKIEDFVQSQVMLKSGNELVATGQLIKVDDQYA 60
Query: 298 IRIT 301
+ +
Sbjct: 61 VTVD 64
>gi|51103052|gb|AAT96198.1| HrcQa [Pseudomonas viridiflava]
Length = 238
Score = 45.4 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
++ + + + + L P TLL+ ++ Q + + +
Sbjct: 114 APDDASFGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPW-QARYKPVDDTW-------- 164
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
V I TL ++ +L+ G V+
Sbjct: 165 ---PVTTPLIIGELVLTLNELASLRPGDVV 191
>gi|323180306|gb|EFZ65858.1| surface presentation of antigens family protein [Escherichia coli
1180]
Length = 134
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 30/86 (34%)
Query: 225 EDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
++ + +L V I+ + K L ++ L ++I L + + NG
Sbjct: 48 DENDEQMINSFEELPVKIEFVLGKKIINLYEIDDLCAKRIISLLPESEKNIEIRVNGALT 107
Query: 285 YSCELGRVGKNYTIRITDRINFDQKS 310
EL V + I ++ +
Sbjct: 108 GYGELVEVDDKLGVEIHSWLSGNNNV 133
>gi|119947193|ref|YP_944873.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37]
gi|119865797|gb|ABM05274.1| hypothetical protein Ping_3591 [Psychromonas ingrahamii 37]
Length = 266
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ + V + + L D+ +L IG VI A S ++
Sbjct: 188 KASIEKSLLSVEVEGYVTMMSRTLKLGDISSLNIGDVISMEMH--DHAFFSIGDTTVFRG 245
Query: 288 ELGRVGKNYTIRITDRINFDQ 308
++ + + D+ DQ
Sbjct: 246 KISTQNERLLFTVNDQQENDQ 266
>gi|190894059|ref|YP_001984353.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
gi|190699720|gb|ACE93803.1| type III secretion system translocation protein [Rhizobium etli
CIAT 652]
Length = 339
Score = 45.4 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 24/71 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
+ + + + L+ + T+ G V + A G+ I E+ V
Sbjct: 269 VDSIPIKLVFDAGRLELPLRALETIGEGYVFNLDRPLSDAVDIIAQGRIIGRGEIISVDG 328
Query: 295 NYTIRITDRIN 305
+R+T +
Sbjct: 329 LSAVRVTALHD 339
>gi|254253711|ref|ZP_04947028.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
gi|124898356|gb|EAY70199.1| Flagellar motor switch/type III secretory pathway protein
[Burkholderia dolosa AUO158]
Length = 388
Score = 45.0 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRV 292
+ QL++ + I+ + + L+ G V+ L G+ I EL V
Sbjct: 311 EISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSV 370
Query: 293 GKNYTIRITD 302
G + +R+
Sbjct: 371 GDHLGVRLVQ 380
>gi|227328492|ref|ZP_03832516.1| type III secretion protein [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 297
Score = 45.0 bits (105), Expect = 0.015, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 23/75 (30%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
D L V + R TL + L G V+ A L + S
Sbjct: 199 SDNVTENLPPLPVTLHIRCGSLTMTLAKLQHLASGSVLTLRDVVPGQAWLYHGDIALASG 258
Query: 288 ELGRVGKNYTIRITD 302
+L V ++IT
Sbjct: 259 DLVDVEGRLGLQITQ 273
>gi|304414275|ref|ZP_07395643.1| type III secretion system protein [Candidatus Regiella insecticola
LSR1]
gi|304283489|gb|EFL91885.1| type III secretion system protein [Candidatus Regiella insecticola
LSR1]
Length = 329
Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + I ++D+ L +GQ + + +G+++ S L R G+
Sbjct: 258 LDALEKTLVMEIGRLDMKIEDIKALSVGQTLACESSCYGEVGIRLDGQQVGSGNLVRCGE 317
Query: 295 NYTIRITD 302
+RI
Sbjct: 318 ELVVRIDR 325
>gi|71388160|gb|AAZ31294.1| EpaO [Escherichia coli]
Length = 315
Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 26/84 (30%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ D L V I+ + K L + L ++I L +
Sbjct: 221 KKNESEIYDENDDQMINSFEDLPVKIEFVLGKKIMNLYETDELCAKRIISLLPESEKNIE 280
Query: 277 LSANGKEIYSCELGRVGKNYTIRI 300
+ NG EL V + I
Sbjct: 281 IRVNGALTGYGELVEVDDKLGVEI 304
>gi|307947531|ref|ZP_07662864.1| hypothetical protein TRICHSKD4_6282 [Roseibium sp. TrichSKD4]
gi|307769349|gb|EFO28577.1| hypothetical protein TRICHSKD4_6282 [Roseibium sp. TrichSKD4]
Length = 377
Score = 44.6 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + T ++V LK+G +PF E + NG++ S L I
Sbjct: 311 ELMLSFVPAKLAMTDNEIVALKVGTELPFQRPENGAVEILCNGEKAGSGNLVLQDGCMGI 370
Query: 299 RITDR 303
++ +
Sbjct: 371 KVQEI 375
>gi|172064927|ref|YP_001815639.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
gi|171997169|gb|ACB68086.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria MC40-6]
Length = 374
Score = 44.6 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVG 293
QL++ + I+ + + L+ G V+ L G+ I EL VG
Sbjct: 298 ISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSVG 357
Query: 294 KNYTIRITD 302
+ +R+
Sbjct: 358 DHLGVRLVQ 366
>gi|289663758|ref|ZP_06485339.1| HrcQ protein [Xanthomonas campestris pv. vasculorum NCPPB702]
gi|289668180|ref|ZP_06489255.1| HrcQ protein [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 268
Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGR 291
L + + ++ L + L+ GQ++ L G+ I + L
Sbjct: 189 TDVAALELPVQLEVDQLALPLSVLSGLQPGQILELSVPIDQADIRLVVYGQTIGTGRLLA 248
Query: 292 VGKNYTIRITDR 303
VG++ ++I
Sbjct: 249 VGEHLGVQILSM 260
>gi|108809073|ref|YP_652989.1| flagellar motor switch protein [Yersinia pestis Antiqua]
gi|108780986|gb|ABG15044.1| flagellar motor switch protein [Yersinia pestis Antiqua]
Length = 126
Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 197 FVLIIPQETLLKTTLISLSSQNKSENQSEDLIDP-FARKTYQLNVNIDTRINLKKTTLKD 255
F + I + + + K+ ++ L + +L V + ++++ TL +
Sbjct: 13 FSIFIDAPHIDRLIDTIKTKNEKAVEKNVSLSERQLEHLVKKLPVTLTSQLSNINLTLAE 72
Query: 256 VVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
++ LK G +I E + + ++S +
Sbjct: 73 LMALKEGDIISASLPEYFP--VFIGKEALFSAAITENRGKL 111
>gi|170698359|ref|ZP_02889433.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
gi|170136698|gb|EDT04952.1| type III secretion system apparatus protein YscQ/HrcQ [Burkholderia
ambifaria IOP40-10]
Length = 374
Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH-REKTCAILSANGKEIYSCELGRVG 293
QL++ + I+ + + L+ G V+ L G+ I EL VG
Sbjct: 298 ISQLDLPLKLEIDTVSMPVAQLSALRAGYVLELPTALPDARVRLVTYGQTIGFGELVSVG 357
Query: 294 KNYTIRITD 302
+ +R+
Sbjct: 358 DHLGVRLVQ 366
>gi|332981460|ref|YP_004462901.1| MCP methylation inhibitor CheC [Mahella australiensis 50-1 BON]
gi|332699138|gb|AEE96079.1| CheC, inhibitor of MCP methylation [Mahella australiensis 50-1 BON]
Length = 205
Score = 44.6 bits (104), Expect = 0.021, Method: Composition-based stats.
Identities = 12/162 (7%), Positives = 44/162 (27%), Gaps = 9/162 (5%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFS---HIIHSF 77
+ G + +G + + + V++ + F ++
Sbjct: 1 MVDIDGLNSFEIDVLREIGNIGAGNAATALAKMLSKKVNMHVPEVRIMDFKNVPDVLGGA 60
Query: 78 KENFVFSQASLSS-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
++ + + + + L++ ++G P NR L+ ++ +
Sbjct: 61 EQPVMGVYLNFEGDVEGSVLLVMDEASAHILIDMMMGR-----PIDTNRPLNDIDLSAVQ 115
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
+++ +ST + + +
Sbjct: 116 ELGNILTSSYLGALSTLAKLDVRPSIPCLAIDMAGAILSVPA 157
>gi|330950823|gb|EGH51083.1| type III secretion protein HrcQb [Pseudomonas syringae Cit 7]
Length = 133
Score = 44.2 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 61 LDSLELDLTLRCGELRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 121 RLGLQITRLV 130
>gi|322432987|ref|YP_004210236.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
MP5ACTX9]
gi|321165214|gb|ADW70918.1| surface presentation of antigens (SPOA) protein [Acidobacterium sp.
MP5ACTX9]
Length = 100
Score = 44.2 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 29/72 (40%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
+ L + +++ T+ ++ L G ++ + T L NG + E V
Sbjct: 29 KLVPWLPCTLALEVSVVGFTVGSLLKLTKGSLVQTSCHQSTDIPLHVNGILMAWTEFEVV 88
Query: 293 GKNYTIRITDRI 304
G+ RITD +
Sbjct: 89 GERLAARITDLV 100
>gi|14422436|dbj|BAB60843.1| epaO2 [Escherichia coli]
Length = 173
Score = 44.2 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%)
Query: 217 QNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ ++ + +L V I+ + K L ++ L ++I L +
Sbjct: 79 KKNESEIYDENDEQMINSFEELPVKIEFVLVKKIMNLYEIDELCAKRIISLLPESEKNIE 138
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG EL V + I ++ +
Sbjct: 139 IRVNGALTGYGELVEVDDKLGVEIHSWLSGNNNV 172
>gi|312962467|ref|ZP_07776958.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
gi|311283394|gb|EFQ61984.1| hypothetical protein PFWH6_4387 [Pseudomonas fluorescens WH6]
Length = 109
Score = 44.2 bits (103), Expect = 0.028, Method: Composition-based stats.
Identities = 8/75 (10%), Positives = 27/75 (36%)
Query: 229 DPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCE 288
+ +++++ + + + K + G+V+P + NG+ E
Sbjct: 27 RDLSPSIRPSSMHLEILLQEQLVSRKRLAAFAPGKVLPLAPTVIHGVEVRVNGQLFALGE 86
Query: 289 LGRVGKNYTIRITDR 303
L ++ + + +
Sbjct: 87 LVQLEDRLGVELHEV 101
>gi|326794363|ref|YP_004312183.1| surface presentation of antigens (SPOA) protein [Marinomonas
mediterranea MMB-1]
gi|326545127|gb|ADZ90347.1| surface presentation of antigens (SPOA) protein [Marinomonas
mediterranea MMB-1]
Length = 142
Score = 43.9 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 31/89 (34%)
Query: 215 SSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
S + +++SE +K + + + ++ L IG V+ +
Sbjct: 32 SDASDHQSESEPAPSTILKKYPDAPLELTLNAGRISASFDELSQLNIGSVLVATGEKAGY 91
Query: 275 AILSANGKEIYSCELGRVGKNYTIRITDR 303
A + + I EL V I+IT
Sbjct: 92 ATMYHQQQAIARGELVNVEGRLGIQITHV 120
>gi|238793337|ref|ZP_04636963.1| Type III secretion system apparatus protein [Yersinia intermedia
ATCC 29909]
gi|238727306|gb|EEQ18834.1| Type III secretion system apparatus protein [Yersinia intermedia
ATCC 29909]
Length = 304
Score = 43.9 bits (102), Expect = 0.036, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 23/69 (33%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
QL + I L D+ L +GQ + + +G+ + S L
Sbjct: 229 ALEQLPQTLVMEIGRLTLPLSDIKQLAVGQTLDCKTAFYGEVNIRLHGQSVGSGSLLCCD 288
Query: 294 KNYTIRITD 302
+ +RI
Sbjct: 289 EQLIVRIEQ 297
>gi|217077807|ref|YP_002335525.1| CheY-P phosphatase CheC [Thermosipho africanus TCF52B]
gi|217037662|gb|ACJ76184.1| CheY-P phosphatase CheC [Thermosipho africanus TCF52B]
Length = 205
Score = 43.5 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 27/199 (13%), Positives = 57/199 (28%), Gaps = 20/199 (10%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQ 85
+ +G + + VDIS S + S I F+
Sbjct: 8 SQLDFLKEIGNIGSGNAATALSTMIGKKVDISVPSTKVVPISQIPFIFENPEEIVCAIKM 67
Query: 86 ASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAV 145
+ ++N V + + L G++ E I L + K +
Sbjct: 68 KMREDVEGEILLILNSNTVKEINKILTGSTLEDITS-----LDEFSASMLKEIGNIMCGS 122
Query: 146 LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSN-------EFVTTINMNMTIENVASSFV 198
+S N + + + +++ I ++ IE++
Sbjct: 123 YVTALSGFTGFFINPDPPELAVDMISAVLAEVSLSVSTTEDYILLIETSIKIEDIDKELT 182
Query: 199 ---LIIP-QETLLKTTLIS 213
L++P +E+L K
Sbjct: 183 GYLLLLPNEESLEKILKKL 201
>gi|62286914|sp|Q60235|HRCQB_PSESY RecName: Full=Type III secretion protein HrcQb
gi|818890|gb|AAB05074.1| HrpU [Pseudomonas syringae pv. syringae]
gi|148562539|gb|ABQ88358.1| HrcQb [Pseudomonas syringae pv. syringae]
Length = 133
Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 61 LDSLELDLTLRCGDLRLTLAELRRLDAGSILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 121 RLGLQITRLV 130
>gi|66044460|ref|YP_234301.1| type III secretion protein HrcQb [Pseudomonas syringae pv. syringae
B728a]
gi|63255167|gb|AAY36263.1| type III secretion protein HrcQb [Pseudomonas syringae pv. syringae
B728a]
Length = 132
Score = 43.5 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 60 LDSLELDLTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 119
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 120 RLGLQITRLV 129
>gi|327401343|ref|YP_004342182.1| CheC, inhibitor of MCP methylation [Archaeoglobus veneficus SNP6]
gi|327316851|gb|AEA47467.1| CheC, inhibitor of MCP methylation [Archaeoglobus veneficus SNP6]
Length = 198
Score = 43.5 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 6/135 (4%)
Query: 43 KKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ---ASLSSWSSNFFIGC 99
+ + + + +DV + T S I + + + S + +
Sbjct: 19 ARRVAENLSAMLGMDVQMKITKIDFVTLSDIPEEIGDEEMVGVYLMFHGTP-SGHLMVLF 77
Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
+ LL E + ++K I++ + ++ +
Sbjct: 78 PVASAKKVASLLLAGIGEDNGTGEG--FTDLDKSAISEVGNIITSSFIDGWANVLKTEID 135
Query: 160 LEDFYDIDYLKKNTN 174
+ + I +
Sbjct: 136 ISTPHLIHDMGSAVI 150
>gi|94986980|ref|YP_594913.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
gi|94731229|emb|CAJ54592.1| putative translocation protein in type III secretion [Lawsonia
intracellularis PHE/MN1-00]
Length = 360
Score = 43.5 bits (101), Expect = 0.043, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 22/71 (30%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
V I I TTL ++ G + ILS K I + L I
Sbjct: 290 EVPISFEIGKYNTTLSELEHFIEGHTFTLELDIHSPVILSFEDKTIGTGVLMNFNGVIGI 349
Query: 299 RITDRINFDQK 309
RI + +
Sbjct: 350 RILEFSTTIDE 360
>gi|253990918|ref|YP_003042274.1| hypothetical protein PAU_03444 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782368|emb|CAQ85532.1| Hypothetical protein PAU_03444 [Photorhabdus asymbiotica]
Length = 71
Score = 43.5 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYT 297
+ V +D + TL +++ L+ GQV ++ ++ IL + + I + L +V + +
Sbjct: 1 MRVKLDVVVANCSMTLDELIHLQKGQVKSLMNFVQSEVILKSGNQVIATGILVKVDEQFC 60
Query: 298 IRITDR 303
+ I
Sbjct: 61 VAIDQV 66
>gi|166154014|ref|YP_001654132.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
gi|166154889|ref|YP_001653144.1| type III secretion system protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335214|ref|ZP_07223458.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
gi|165930002|emb|CAP03485.1| Type III secretion component, basal body [Chlamydia trachomatis
434/Bu]
gi|165930877|emb|CAP06439.1| Type III secretion component, basal body [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 373
Score = 43.1 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + ++ + + L G V+ F + NG ++ + + IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370
Query: 301 TDR 303
+
Sbjct: 371 LEV 373
>gi|320107031|ref|YP_004182621.1| surface presentation of antigens (SpoA) protein [Terriglobus
saanensis SP1PR4]
gi|319925552|gb|ADV82627.1| surface presentation of antigens (SpoA) protein [Terriglobus
saanensis SP1PR4]
Length = 79
Score = 43.1 bits (100), Expect = 0.055, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L V + + L + ++D++ L+ G V+ E L ++ CE V
Sbjct: 10 LSTLQVRMKVALPLPRFCVRDLLALQPGSVVGSGWNETEDVPLIGGETQVSWCEFETVED 69
Query: 295 NYTIRITDRI 304
+R+T I
Sbjct: 70 RIAVRLTRLI 79
>gi|332344758|gb|AEE58092.1| Type III secretion apparatus protein [Escherichia coli UMNK88]
Length = 81
Score = 43.1 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 23/70 (32%)
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
L V I+ + K L ++ L ++I L + + NG EL
Sbjct: 1 MINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRIISLLSESEKNIEIRVNGALTGYGELV 60
Query: 291 RVGKNYTIRI 300
V + I
Sbjct: 61 EVDDKLGVEI 70
>gi|51102997|gb|AAT96144.1| HrcQa [Pseudomonas viridiflava]
Length = 238
Score = 43.1 bits (100), Expect = 0.059, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
++ + + + + L P TLL+ ++ Q + + +
Sbjct: 114 APDDASFGCRVQVRLGGESLHAHLHSPSHTLLRLLHLAPW-QARYKPVDDTW-------- 164
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
V I T ++ +L+ G V+
Sbjct: 165 ---PVTTPLIIGELVLTPNELASLRPGDVV 191
>gi|288560236|ref|YP_003423722.1| adhesin-like protein [Methanobrevibacter ruminantium M1]
gi|288542946|gb|ADC46830.1| adhesin-like protein [Methanobrevibacter ruminantium M1]
Length = 2917
Score = 43.1 bits (100), Expect = 0.060, Method: Composition-based stats.
Identities = 30/271 (11%), Positives = 69/271 (25%), Gaps = 31/271 (11%)
Query: 40 YLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGC 99
LY D + I + G I + +++ + S
Sbjct: 2057 ELYDGTSAVGLIMVSDAILSIDIPAVDYGSPITIYATVEDS------EGNPLSGLVIATL 2110
Query: 100 SNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPN 159
++ E + N + AK ++ +
Sbjct: 2111 DGVDCNIYVDA-----GEGSITIPNELFAGEYLVTAKLLGEN--NAMDTALLVVNPIEAE 2163
Query: 160 L-EDFYDIDYLKKNTNRLSNE-----FVTT----INMNMTIENVASSFVLIIPQETLLKT 209
L +I Y LS+E V ++ + IE+ + ++P K
Sbjct: 2164 LIVSIDNITYNNPVEVELSSEYALDGIVILTIDGVDYAIEIED--GEAIALLPILLDSKD 2221
Query: 210 TLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
++ ++ + + + + T D +K+ V +
Sbjct: 2222 YEVTAKFIGENFDVEDATTSFTVEAIETA---LTLELENSTITYGDFAIVKVSLVDELGN 2278
Query: 270 REKTCAILSANGKEIYSCELGRVGKNYTIRI 300
L+ + + L V T+ +
Sbjct: 2279 PMDGIVTLTVGDQ---TGSLAVVNGEGTVSV 2306
>gi|330969103|gb|EGH69169.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 132
Score = 43.1 bits (100), Expect = 0.062, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 26/70 (37%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 60 LDSLELDLTLRCGELRLTLAELRRLDAGTILEVTGIAPGHATLCHGEQVVAEGELVDVEG 119
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 120 RLGLQITRLV 129
>gi|304414642|ref|ZP_07395718.1| putative flagellar motor switch protein [Candidatus Regiella
insecticola LSR1]
gi|304283180|gb|EFL91588.1| putative flagellar motor switch protein [Candidatus Regiella
insecticola LSR1]
Length = 297
Score = 42.7 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 18/206 (8%), Positives = 67/206 (32%), Gaps = 16/206 (7%)
Query: 93 SNFFIGCSNNLVITLLENLLGASHETIPQLY-NRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ N ++ +L + G S ++ + + ++ E +L + L +
Sbjct: 84 GHVAFDTERNFLLNILNDYYGLSKNSVTEPSIHVPITQTEARLKNKLG----LELTELFL 139
Query: 152 TTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTL 211
+ L ++ + ++ + F +++ +
Sbjct: 140 NHDDFGEKLAFKTT-------NGVFIKQWSYRLIFSLA-GDEQHVFYILLDANHADRILH 191
Query: 212 ISLSSQNK-SENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHR 270
++ + + + P + +L ++++ ++ TL ++ L+ G++I
Sbjct: 192 SQDANDEENKKTTDNNSPLPLEKLFNKLPISLNIKLISVNLTLAELKALEKGEIISISMP 251
Query: 271 EKTCAILSANGKEIYSCELGRVGKNY 296
+ + ++I+S +
Sbjct: 252 DHFP--VFIGTEQIFSAIITENRGKL 275
>gi|171322881|ref|ZP_02911586.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
gi|171091755|gb|EDT37285.1| surface presentation of antigens (SPOA) protein [Burkholderia
ambifaria MEX-5]
Length = 70
Score = 42.7 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKT-CAILSANGKEIYSCELGRVGKNYTIRI 300
+ I+ ++ ++ L+ G V+ + L A G+ I L VG + +RI
Sbjct: 1 MHVEIDTLSLSIAELAALRPGYVLELPLAARDVPVRLVAYGQAIGGGRLVAVGAHLGVRI 60
Query: 301 TDRINFD 307
D
Sbjct: 61 DRMAGDD 67
>gi|76789412|ref|YP_328498.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
gi|237803102|ref|YP_002888296.1| type III secretion system protein [Chlamydia trachomatis
B/Jali20/OT]
gi|237805023|ref|YP_002889177.1| type III secretion system protein [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255349061|ref|ZP_05381068.1| type III secretion system protein [Chlamydia trachomatis 70]
gi|255503599|ref|ZP_05381989.1| type III secretion system protein [Chlamydia trachomatis 70s]
gi|255507279|ref|ZP_05382918.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
gi|76167942|gb|AAX50950.1| SctQ [Chlamydia trachomatis A/HAR-13]
gi|231273323|emb|CAX10238.1| Type III secretion component, basal body [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274336|emb|CAX11131.1| Type III secretion component, basal body [Chlamydia trachomatis
B/Jali20/OT]
gi|289525716|emb|CBJ15197.1| Type III secretion component, basal body [Chlamydia trachomatis
Sweden2]
gi|296435286|gb|ADH17464.1| type III secretion system protein [Chlamydia trachomatis E/150]
gi|296439004|gb|ADH21157.1| type III secretion system protein [Chlamydia trachomatis E/11023]
Length = 373
Score = 42.7 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + ++ + + L G V+ F + NG ++ + + IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370
Query: 301 TDR 303
+
Sbjct: 371 LEV 373
>gi|222480967|ref|YP_002567204.1| CheC, inhibitor of MCP methylation [Halorubrum lacusprofundi ATCC
49239]
gi|222453869|gb|ACM58134.1| CheC, inhibitor of MCP methylation [Halorubrum lacusprofundi ATCC
49239]
Length = 399
Score = 42.7 bits (99), Expect = 0.071, Method: Composition-based stats.
Identities = 9/136 (6%), Positives = 28/136 (20%), Gaps = 15/136 (11%)
Query: 34 ISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASL--SSW 91
+ L + + D+ + T + +F +
Sbjct: 10 ACNRLAERGARQAAGALTDLTGTDLSVEVTGASVASGEDLAEAFAGRESIGVSVGLRGGL 69
Query: 92 SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCIS 151
+ V LL L G +++ + +
Sbjct: 70 EGEAVLAFDAENVDALLSLLPGG-------------ASMGRSAVTEVGNIALGGFLDGWA 116
Query: 152 TTQESSPNLEDFYDID 167
++ ++ +
Sbjct: 117 NYLGAAIDMTPPRYFE 132
>gi|296437141|gb|ADH19311.1| type III secretion system protein [Chlamydia trachomatis G/11222]
Length = 373
Score = 42.7 bits (99), Expect = 0.073, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + ++ + + L G V+ F + NG ++ + + IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370
Query: 301 TDR 303
+
Sbjct: 371 LEV 373
>gi|15834668|ref|NP_296427.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270284833|ref|ZP_06194227.1| type III secretion system protein [Chlamydia muridarum Nigg]
gi|270288862|ref|ZP_06195164.1| type III secretion system protein [Chlamydia muridarum Weiss]
gi|301336213|ref|ZP_07224415.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
gi|8163109|gb|AAF73521.1| type III secretion translocase SctQ [Chlamydia muridarum Nigg]
Length = 373
Score = 42.7 bits (99), Expect = 0.078, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + ++ + + L+ G ++ F + NG ++ + + IR+
Sbjct: 311 IVAEVARYTLSVGEFLKLEPGSILHFEGMHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370
Query: 301 TDR 303
+
Sbjct: 371 LEV 373
Score = 37.3 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 25/218 (11%), Positives = 59/218 (27%), Gaps = 21/218 (9%)
Query: 58 VDISYTSCQSGKFSHIIHSFKENFVFSQASLSSW-SSNFFIGCSNNLVITLLENLLGASH 116
V++S+ S + + + E+ + + + S F+I S + L+ + S
Sbjct: 53 VELSFESQGLLSAAPAVQEYGEHVLLQPFLANPFESGEFYIVSSEEDLQALIGTIFNDSS 112
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRL 176
L + P++ D
Sbjct: 113 LASYFYEKDRLLGFHYYFVAEICKLLQE---------VSWIPSMAVKVTGDVAFSARALE 163
Query: 177 SNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTY 236
+ V + + V F +++P T L +N++ + +
Sbjct: 164 GDYHVVQVTCRLDSSYV--RFSVLVPDTTAQSV-YKFLEEKNQTFDIQKID--------M 212
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
Q V + + + + +D + G I
Sbjct: 213 QTPVTLSVEVGFCQISEEDWHQVVPGSFILLDACLYDP 250
>gi|15605405|ref|NP_220191.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
gi|255311498|ref|ZP_05354068.1| type III secretion system protein [Chlamydia trachomatis 6276]
gi|255317800|ref|ZP_05359046.1| type III secretion system protein [Chlamydia trachomatis 6276s]
gi|3329123|gb|AAC68267.1| Flagellar Motor Switch Domain/YscQ family [Chlamydia trachomatis
D/UW-3/CX]
gi|296436213|gb|ADH18387.1| type III secretion system protein [Chlamydia trachomatis G/9768]
gi|296438073|gb|ADH20234.1| type III secretion system protein [Chlamydia trachomatis G/11074]
gi|297140574|gb|ADH97332.1| type III secretion system protein [Chlamydia trachomatis G/9301]
gi|297748803|gb|ADI51349.1| type III secreted protein SctQ [Chlamydia trachomatis D-EC]
gi|297749683|gb|ADI52361.1| type III secreted protein SctQ [Chlamydia trachomatis D-LC]
Length = 373
Score = 42.7 bits (99), Expect = 0.080, Method: Composition-based stats.
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFL-HREKTCAILSANGKEIYSCELGRVGKNYTIRI 300
I + ++ + + L G V+ F + NG ++ + + IR+
Sbjct: 311 IVAEVARYSLSVGEFLKLGPGSVLQFDGVHPTLGVDIILNGAKVGRGNIIALQDVLGIRV 370
Query: 301 TDR 303
+
Sbjct: 371 LEV 373
>gi|15618614|ref|NP_224900.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
gi|15836236|ref|NP_300760.1| type III secretion system protein [Chlamydophila pneumoniae J138]
gi|16752336|ref|NP_444594.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
gi|33242062|ref|NP_877003.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
gi|4377007|gb|AAD18843.1| Flagellar Motor Switch Domain/YscQ family [Chlamydophila pneumoniae
CWL029]
gi|6672034|dbj|BAA88654.1| flagellar motor switch domain/YscQ family [Chlamydophila
pneumoniae]
gi|8163350|gb|AAF73618.1| type III secretion translocase SctQ [Chlamydophila pneumoniae AR39]
gi|8979076|dbj|BAA98911.1| flagellar motor switch domain/YscQ family [Chlamydophila pneumoniae
J138]
gi|33236572|gb|AAP98660.1| flagellar motor switch protein [Chlamydophila pneumoniae TW-183]
Length = 371
Score = 42.3 bits (98), Expect = 0.087, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 24/62 (38%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + + + + L +G ++ + + +G ++ E+ +G IR+
Sbjct: 310 LVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDVLGIRVL 369
Query: 302 DR 303
+
Sbjct: 370 EV 371
>gi|213650746|ref|ZP_03380799.1| flagellar motor switch protein FliM [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 51
Score = 42.3 bits (98), Expect = 0.088, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+P I +G + + + G V Y +R+ IN
Sbjct: 1 MPIEKP--DRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINP 40
>gi|330872917|gb|EGH07066.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 133
Score = 42.3 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 25/69 (36%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 60 ALDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVD 119
Query: 294 KNYTIRITD 302
++IT
Sbjct: 120 GRLGLQITR 128
>gi|302185359|ref|ZP_07262032.1| type III secretion system apparatus protein YscQ/HrcQ [Pseudomonas
syringae pv. syringae 642]
gi|256259401|gb|ACU65038.1| HrcQ [Pseudomonas syringae pv. syringae]
Length = 393
Score = 42.3 bits (98), Expect = 0.091, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L + + R TL ++ TL G V+ + A L + + EL V
Sbjct: 322 NDLALPLTLRCGQINLTLGELATLVPGTVLEVPGIKPGLAGLYYGERRLAQGELVDVEGR 381
Query: 296 YTIRITDR 303
++I
Sbjct: 382 LGLQILQV 389
>gi|152975176|ref|YP_001374693.1| flagellar motor switch protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023928|gb|ABS21698.1| flagellar motor switch protein, putative [Bacillus cytotoxicus NVH
391-98]
Length = 74
Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 24/67 (35%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + K L +EI + ++
Sbjct: 5 DDIPLTIYFEIGKTKKKIEDLLHITKGTLYRLEDSTKNTVRLMLENEEIGTGKILTKNGK 64
Query: 296 YTIRITD 302
+ I +
Sbjct: 65 MYVEIVE 71
>gi|269302491|gb|ACZ32591.1| type III secretion apparatus protein, YscQ/HrcQ family
[Chlamydophila pneumoniae LPCoLN]
Length = 371
Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 24/62 (38%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRIT 301
+ + + + + L +G ++ + + +G ++ E+ +G IR+
Sbjct: 310 LVVEVARYSLAVSEFIKLNLGSILSLGNHPAYGVDIILDGAKVGRGEIIALGDVLGIRVL 369
Query: 302 DR 303
+
Sbjct: 370 EV 371
>gi|304321118|ref|YP_003854761.1| hypothetical protein PB2503_07819 [Parvularcula bermudensis
HTCC2503]
gi|303300020|gb|ADM09619.1| hypothetical protein PB2503_07819 [Parvularcula bermudensis
HTCC2503]
Length = 309
Score = 42.3 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 243 DTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSA----NGKEIYSCELGRVGKNYTI 298
+ + + ++ ++ LK G + + ++ + + ELG + + ++
Sbjct: 192 EALVAKPRLSITSILALKAGDKLQLPGAKLEAVTVAVPTAKSALSLAKGELGTIEQRRSL 251
Query: 299 RITDRINFDQ 308
R+T+ ++ +
Sbjct: 252 RLTEILDPGE 261
>gi|327193026|gb|EGE59938.1| flagellar motor switch protein FliN [Rhizobium etli CNPAF512]
Length = 56
Score = 42.3 bits (98), Expect = 0.093, Method: Composition-based stats.
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 257 VTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK---NYTIRITDRINFDQ 308
+ L G I + + NG+ I E+ + + +++ + ++ +
Sbjct: 1 MNLNEGATIALDKKIGEPVEIMVNGRRIARGEITVLDNDDTRFGVKLIEVLSTKK 55
>gi|66044461|ref|YP_234302.1| type III secretion protein HrcQa [Pseudomonas syringae pv. syringae
B728a]
gi|63255168|gb|AAY36264.1| type III secretion protein HrcQa [Pseudomonas syringae pv. syringae
B728a]
Length = 238
Score = 42.3 bits (98), Expect = 0.098, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%)
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
E +++ + + L TLL+ + Q + +
Sbjct: 114 APTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADW-QVLKRDVDQSWS------- 165
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
V + TL+ + L+ G V+
Sbjct: 166 ----VATPLIVGELSLTLEQIAALRPGDVV 191
>gi|312171378|emb|CBX79637.1| Surface presentation of antigens protein spaO [Erwinia amylovora
ATCC BAA-2158]
Length = 308
Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKN 295
+L VNI+ ++ TL ++ ++ G +P + + N K EL + +
Sbjct: 226 KLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEKKIKIYLNRKLFACGELVAMEDGS 285
Query: 296 YTIRITDRINF 306
+ + I
Sbjct: 286 FAVEINQVTPG 296
>gi|292487270|ref|YP_003530142.1| surface presentation of antigens protein spaO [Erwinia amylovora
CFBP1430]
gi|292900358|ref|YP_003539727.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291200206|emb|CBJ47334.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
gi|291552689|emb|CBA19734.1| Surface presentation of antigens protein spaO [Erwinia amylovora
CFBP1430]
Length = 308
Score = 42.3 bits (98), Expect = 0.11, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKN 295
+L VNI+ ++ TL ++ ++ G +P + + N K EL + +
Sbjct: 226 KLPVNIEFVLDKNTVTLSELEEIRPGVALPINPGAEKKIKIYLNRKLFACGELVAMEDGS 285
Query: 296 YTIRITDRINF 306
+ + I
Sbjct: 286 FAVEINQVTPG 296
>gi|330969102|gb|EGH69168.1| type III secretion protein HrcQa [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 238
Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 12/90 (13%)
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
E +++ + + L TLL+ + Q + +
Sbjct: 114 APTEPAIGCRVHVRLGSERLDAHLHAAPATLLRLLGSADW-QVLKRDVDQSWS------- 165
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
V + TL+ + L+ G V+
Sbjct: 166 ----VATPLIVGELSLTLEQIAALRPGDVV 191
>gi|229166617|ref|ZP_04294369.1| Flagellar motor switch protein [Bacillus cereus AH621]
gi|228616871|gb|EEK73944.1| Flagellar motor switch protein [Bacillus cereus AH621]
Length = 74
Score = 41.9 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 25/67 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + + K L +EI + ++
Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSAKNTVRLMLENEEIGTGKILTKNGK 64
Query: 296 YTIRITD 302
+ I +
Sbjct: 65 MYVEIVE 71
>gi|238796112|ref|ZP_04639623.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
43969]
gi|238720057|gb|EEQ11862.1| Type III secretion apparatus protein [Yersinia mollaretii ATCC
43969]
Length = 303
Score = 41.9 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 16/48 (33%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGK 282
+ V + + L+++ ++ G V + + AN
Sbjct: 219 VAGVTVKLTFVLGHSDIPLQELAHIQPGAVYELGADKDREVKIYANSV 266
>gi|322368719|ref|ZP_08043286.1| taxis cluster protein CheC [Haladaptatus paucihalophilus DX253]
gi|320551450|gb|EFW93097.1| taxis cluster protein CheC [Haladaptatus paucihalophilus DX253]
Length = 389
Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 20/222 (9%), Positives = 57/222 (25%), Gaps = 14/222 (6%)
Query: 20 RLTGKLGDKKTIEKISS--SLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSF 77
L G G+ ++E +S + + + ++ + T + +
Sbjct: 172 ELLGDDGETVSVEDLSHFDEMTRGGATTVAENITAMTGIETTVEITHVSFVPVEEVPEAL 231
Query: 78 KENFVF-SQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
+ L + F + T ++ GA + LS E+ +
Sbjct: 232 GDTTYVGVVIELETSPGGFVLIL---FDETSARDISGALLPGDDGFSDGELSETEQNAIQ 288
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDF-------YDIDYLKKNTNRLSNEFVTTINMNMT 189
+++ + E++ ++ I EF + +
Sbjct: 289 ELGNIMASSFIDGWANALETTIDISPPTFAHDMGSAIADPLVAQLGQKQEFAFVSDATIR 348
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPF 231
L + + + S + ++ +
Sbjct: 349 AAKTPFDCSLYVLPDESE-LREVLSSLDADATSERKTNAGRL 389
>gi|229160724|ref|ZP_04288716.1| Flagellar motor switch protein [Bacillus cereus R309803]
gi|228622739|gb|EEK79573.1| Flagellar motor switch protein [Bacillus cereus R309803]
Length = 74
Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 25/67 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + + K + +EI + ++
Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRIMLENEEIGTGKILTKNGK 64
Query: 296 YTIRITD 302
+ I +
Sbjct: 65 MYVEIVE 71
>gi|289677998|ref|ZP_06498888.1| type III secretion protein hrcQb [Pseudomonas syringae pv. syringae
FF5]
gi|330975865|gb|EGH75931.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 133
Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + + R + TL ++ L G ++ A L + + EL V
Sbjct: 61 LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 121 RLGLQITRLV 130
>gi|330963054|gb|EGH63314.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 133
Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 25/68 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 61 LDSLALDLTLRCGELRLTLAELRGLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 120
Query: 295 NYTIRITD 302
++IT
Sbjct: 121 RLGLQITR 128
>gi|213968263|ref|ZP_03396407.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
T1]
gi|301381808|ref|ZP_07230226.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato
Max13]
gi|302061999|ref|ZP_07253540.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato
K40]
gi|302135081|ref|ZP_07261071.1| type III secretion protein hrcQb [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926901|gb|EEB60452.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
T1]
Length = 137
Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 25/68 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 65 LDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 124
Query: 295 NYTIRITD 302
++IT
Sbjct: 125 RLGLQITR 132
>gi|257487233|ref|ZP_05641274.1| type III secretion component protein HrcQb [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|238577788|gb|ACR46699.1| HrcQb [Pseudomonas syringae pv. tabaci]
gi|331009153|gb|EGH89209.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 129
Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + L +++ R + TL ++ L G ++ A
Sbjct: 39 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGIAPGHAT 98
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 99 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 128
>gi|187778448|ref|ZP_02994921.1| hypothetical protein CLOSPO_02042 [Clostridium sporogenes ATCC
15579]
gi|187772073|gb|EDU35875.1| hypothetical protein CLOSPO_02042 [Clostridium sporogenes ATCC
15579]
Length = 864
Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 242 IDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI--- 298
+ I+ + + D+V LK G ++P R L N E G+NY +
Sbjct: 124 LSKNISSTELVVGDIVRLKPGDIVPADIRIIETERLRVN-------EAVITGENYAVEKY 176
Query: 299 --RITDRINFDQKSLKNFLHK 317
++ D+ + +N L K
Sbjct: 177 STKVEDKEITTSEM-RNILFK 196
>gi|30019807|ref|NP_831438.1| flagellar motor switch protein [Bacillus cereus ATCC 14579]
gi|47565431|ref|ZP_00236472.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
cereus G9241]
gi|49477320|ref|YP_035881.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52143696|ref|YP_083132.1| flagellar motor switch protein [Bacillus cereus E33L]
gi|75763359|ref|ZP_00743097.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118477196|ref|YP_894347.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|163939572|ref|YP_001644456.1| flagellar motor switch protein [Bacillus weihenstephanensis KBAB4]
gi|196033551|ref|ZP_03100963.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
W]
gi|196038931|ref|ZP_03106238.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
NVH0597-99]
gi|196045029|ref|ZP_03112262.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
03BB108]
gi|206970641|ref|ZP_03231593.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH1134]
gi|206974901|ref|ZP_03235816.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
H3081.97]
gi|217959245|ref|YP_002337793.1| flagellar motor switch protein [Bacillus cereus AH187]
gi|218235179|ref|YP_002366447.1| flagellar motor switch protein [Bacillus cereus B4264]
gi|218896696|ref|YP_002445107.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
G9842]
gi|218902876|ref|YP_002450710.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH820]
gi|222095385|ref|YP_002529445.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|225863620|ref|YP_002748998.1| hypothetical protein BCA_1722 [Bacillus cereus 03BB102]
gi|228900344|ref|ZP_04064573.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
gi|228907395|ref|ZP_04071253.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
gi|228914340|ref|ZP_04077955.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228920472|ref|ZP_04083817.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228926798|ref|ZP_04089866.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933046|ref|ZP_04095909.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228938875|ref|ZP_04101475.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228945365|ref|ZP_04107720.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228952145|ref|ZP_04114237.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228958043|ref|ZP_04119778.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228964746|ref|ZP_04125853.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228971756|ref|ZP_04132377.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978365|ref|ZP_04138742.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
gi|228984847|ref|ZP_04145017.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229017048|ref|ZP_04173967.1| Flagellar motor switch protein [Bacillus cereus AH1273]
gi|229023229|ref|ZP_04179739.1| Flagellar motor switch protein [Bacillus cereus AH1272]
gi|229029442|ref|ZP_04185525.1| Flagellar motor switch protein [Bacillus cereus AH1271]
gi|229043518|ref|ZP_04191227.1| Flagellar motor switch protein [Bacillus cereus AH676]
gi|229058411|ref|ZP_04196795.1| Flagellar motor switch protein [Bacillus cereus AH603]
gi|229069313|ref|ZP_04202603.1| Flagellar motor switch protein [Bacillus cereus F65185]
gi|229078944|ref|ZP_04211496.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
gi|229090725|ref|ZP_04221958.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
gi|229096247|ref|ZP_04227220.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
gi|229102361|ref|ZP_04233069.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
gi|229109218|ref|ZP_04238817.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
gi|229115202|ref|ZP_04244612.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
gi|229121314|ref|ZP_04250545.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
gi|229127089|ref|ZP_04256086.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
gi|229132590|ref|ZP_04261438.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
gi|229138462|ref|ZP_04267051.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
gi|229144375|ref|ZP_04272780.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
gi|229149967|ref|ZP_04278193.1| Flagellar motor switch protein [Bacillus cereus m1550]
gi|229155333|ref|ZP_04283443.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
gi|229172408|ref|ZP_04299967.1| Flagellar motor switch protein [Bacillus cereus MM3]
gi|229178170|ref|ZP_04305541.1| Flagellar motor switch protein [Bacillus cereus 172560W]
gi|229183954|ref|ZP_04311169.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
gi|296502363|ref|YP_003664063.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|300117314|ref|ZP_07055104.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|301053300|ref|YP_003791511.1| flagellar motor switch protein [Bacillus anthracis CI]
gi|29895352|gb|AAP08639.1| Flagellar motor switch protein fliN [Bacillus cereus ATCC 14579]
gi|47557421|gb|EAL15748.1| flagellar motor switch protein fliN VC2125, putative [Bacillus
cereus G9241]
gi|49328876|gb|AAT59522.1| flagellar motor switch protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51977165|gb|AAU18715.1| flagellar motor switch protein N [Bacillus cereus E33L]
gi|74489150|gb|EAO52628.1| Flagellar motor switch protein fliN [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118416421|gb|ABK84840.1| flagellar motor switch protein [Bacillus thuringiensis str. Al
Hakam]
gi|163861769|gb|ABY42828.1| flagellar motor switch protein, putative [Bacillus
weihenstephanensis KBAB4]
gi|195993985|gb|EDX57941.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
W]
gi|196024031|gb|EDX62705.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
03BB108]
gi|196030076|gb|EDX68676.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
NVH0597-99]
gi|206734277|gb|EDZ51447.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH1134]
gi|206746920|gb|EDZ58312.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
H3081.97]
gi|217063362|gb|ACJ77612.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH187]
gi|218163136|gb|ACK63128.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
B4264]
gi|218539681|gb|ACK92079.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
AH820]
gi|218542965|gb|ACK95359.1| flagellar motor switch protein FliN domain protein [Bacillus cereus
G9842]
gi|221239443|gb|ACM12153.1| flagellar motor switch protein [Bacillus cereus Q1]
gi|225788270|gb|ACO28487.1| conserved domain protein [Bacillus cereus 03BB102]
gi|228599479|gb|EEK57084.1| Flagellar motor switch protein [Bacillus cereus BGSC 6E1]
gi|228605300|gb|EEK62750.1| Flagellar motor switch protein [Bacillus cereus 172560W]
gi|228610879|gb|EEK68142.1| Flagellar motor switch protein [Bacillus cereus MM3]
gi|228628048|gb|EEK84765.1| Flagellar motor switch protein [Bacillus cereus ATCC 4342]
gi|228633489|gb|EEK90092.1| Flagellar motor switch protein [Bacillus cereus m1550]
gi|228639006|gb|EEK95431.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST24]
gi|228644999|gb|EEL01242.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST26]
gi|228650822|gb|EEL06809.1| Flagellar motor switch protein [Bacillus cereus BDRD-ST196]
gi|228656205|gb|EEL12046.1| Flagellar motor switch protein [Bacillus cereus BDRD-Cer4]
gi|228662159|gb|EEL17768.1| Flagellar motor switch protein [Bacillus cereus 95/8201]
gi|228668342|gb|EEL23774.1| Flagellar motor switch protein [Bacillus cereus Rock1-3]
gi|228674228|gb|EEL29473.1| Flagellar motor switch protein [Bacillus cereus Rock1-15]
gi|228681008|gb|EEL35177.1| Flagellar motor switch protein [Bacillus cereus Rock3-28]
gi|228687207|gb|EEL41112.1| Flagellar motor switch protein [Bacillus cereus Rock3-29]
gi|228692667|gb|EEL46393.1| Flagellar motor switch protein [Bacillus cereus Rock3-42]
gi|228704358|gb|EEL56792.1| Flagellar motor switch protein [Bacillus cereus Rock4-2]
gi|228713800|gb|EEL65685.1| Flagellar motor switch protein [Bacillus cereus F65185]
gi|228719920|gb|EEL71510.1| Flagellar motor switch protein [Bacillus cereus AH603]
gi|228725740|gb|EEL76988.1| Flagellar motor switch protein [Bacillus cereus AH676]
gi|228731901|gb|EEL82800.1| Flagellar motor switch protein [Bacillus cereus AH1271]
gi|228738023|gb|EEL88509.1| Flagellar motor switch protein [Bacillus cereus AH1272]
gi|228744221|gb|EEL94304.1| Flagellar motor switch protein [Bacillus cereus AH1273]
gi|228774797|gb|EEM23193.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228781382|gb|EEM29583.1| Flagellar motor switch protein [Bacillus thuringiensis Bt407]
gi|228787846|gb|EEM35804.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794996|gb|EEM42495.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228801560|gb|EEM48442.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807499|gb|EEM54026.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228814337|gb|EEM60603.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228820724|gb|EEM66749.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228826647|gb|EEM72418.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832911|gb|EEM78480.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228839102|gb|EEM84398.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228845334|gb|EEM90370.1| Flagellar motor switch protein [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228852256|gb|EEM97052.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 200]
gi|228859231|gb|EEN03662.1| Flagellar motor switch protein [Bacillus thuringiensis IBL 4222]
gi|296323415|gb|ADH06343.1| flagellar motor switch protein [Bacillus thuringiensis BMB171]
gi|298725149|gb|EFI65801.1| flagellar motor switch protein [Bacillus cereus SJ1]
gi|300375469|gb|ADK04373.1| flagellar motor switch protein [Bacillus cereus biovar anthracis
str. CI]
gi|324325780|gb|ADY21040.1| flagellar motor switch protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326939375|gb|AEA15271.1| flagellar motor switch protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 74
Score = 41.5 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 25/67 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + + K L +EI + ++
Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 64
Query: 296 YTIRITD 302
+ I +
Sbjct: 65 MYVEIVE 71
>gi|330901780|gb|EGH33199.1| type III secretion protein HrcQb [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330903314|gb|EGH33886.1| type III secretion protein HrcQb [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 133
Score = 41.5 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + + R + TL ++ L G ++ A L + + EL V
Sbjct: 61 LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 121 RLGLQITRLV 130
>gi|330937034|gb|EGH41122.1| type III secretion protein HrcQb [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 133
Score = 41.5 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L + + R + TL ++ L G ++ A L + + EL V
Sbjct: 61 LDSLELALTLRCGELRLTLAELRRLDAGTILEVSGIAPGHATLCHGEQVVAEGELVDVEG 120
Query: 295 NYTIRITDRI 304
++IT +
Sbjct: 121 RLGLQITRLV 130
>gi|302387771|ref|YP_003823593.1| chemotaxis protein CheC [Clostridium saccharolyticum WM1]
gi|302198399|gb|ADL05970.1| CheC, inhibitor of MCP methylation [Clostridium saccharolyticum
WM1]
Length = 208
Score = 41.5 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 14/180 (7%), Positives = 42/180 (23%), Gaps = 16/180 (8%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQASL 88
+ +G + + V ++ + ++ I +
Sbjct: 15 DLIREIGSIGTGNAATALSSLLGKTVRMTLPDVKILGYNEAIKYLGDPEEIVAAILVKMT 74
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ + + +L S L+ +E + I +
Sbjct: 75 GEINGLMLFILKLDFINEVL-----TSVMQQNIEDYYQLNVLETSALEEIGNIIISSYVN 129
Query: 149 CISTTQESSPNLEDFYDIDY-------LKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
+S+ + + NL + + + I+ I L++
Sbjct: 130 AMSSLSDVTINLSVPDIAVNMLGGILSVPMVEFGYQTDKMMMISGQFVIGGKVLHSDLLM 189
>gi|28868604|ref|NP_791223.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
str. DC3000]
gi|62286949|sp|Q9F0H3|HRCQB_PSESM RecName: Full=Type III secretion protein HrcQb
gi|11276515|gb|AAG33883.1| HrcQb [Pseudomonas syringae pv. tomato]
gi|28851842|gb|AAO54918.1| type III secretion protein HrcQb [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331015102|gb|EGH95158.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 137
Score = 41.5 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 25/68 (36%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGK 294
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 65 LDSLALDLTLRCGELRLTLAELRRLDAGTILEVGGVAPGYATLCHGERVVAEGELVDVDG 124
Query: 295 NYTIRITD 302
++IT
Sbjct: 125 RLGLQITR 132
>gi|254575131|gb|ACT68032.1| type III secretion protein [Pantoea stewartii subsp. stewartii
DC283]
Length = 305
Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV-GKNYT 297
V+I+ ++ + TL ++ ++ G +P + + N K EL +
Sbjct: 226 PVDIEFVLDGGRVTLVELEDIRPGAALPLPQDAEKNMKIYLNKKLFARGELVALENGALA 285
Query: 298 IRITDR 303
+ +
Sbjct: 286 VEMNHV 291
>gi|42780855|ref|NP_978102.1| flagellar motor switch protein [Bacillus cereus ATCC 10987]
gi|229195974|ref|ZP_04322727.1| Flagellar motor switch protein [Bacillus cereus m1293]
gi|42736775|gb|AAS40710.1| flagellar motor switch protein, putative [Bacillus cereus ATCC
10987]
gi|228587533|gb|EEK45598.1| Flagellar motor switch protein [Bacillus cereus m1293]
Length = 79
Score = 41.5 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 25/67 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + + K L +EI + ++
Sbjct: 10 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 69
Query: 296 YTIRITD 302
+ I +
Sbjct: 70 MYVEIVE 76
>gi|331664427|ref|ZP_08365333.1| typeIII secretion apparatus protein [Escherichia coli TA143]
gi|331058358|gb|EGI30339.1| typeIII secretion apparatus protein [Escherichia coli TA143]
Length = 113
Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 26/75 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
L V I+ + K L ++ L ++I L + + NG EL V
Sbjct: 38 EDLPVKIEFVLEKKIMNLYEIDDLCAKRIISLLPEAEKNIEIRVNGALTGYGELVEVDDK 97
Query: 296 YTIRITDRINFDQKS 310
+ I ++ +
Sbjct: 98 LGVEIHSWLSGNNNV 112
>gi|229189860|ref|ZP_04316870.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
gi|228593534|gb|EEK51343.1| Flagellar motor switch protein [Bacillus cereus ATCC 10876]
Length = 81
Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 25/67 (37%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + + K L +EI + ++
Sbjct: 12 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGK 71
Query: 296 YTIRITD 302
+ I +
Sbjct: 72 MYVEIVE 78
>gi|320329923|gb|EFW85911.1| type III secretion protein hrcQb [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330874623|gb|EGH08772.1| type III secretion protein HrcQb [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 128
Score = 41.2 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + L +++ R + TL ++ L G ++ + A
Sbjct: 38 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGIQPGHAT 97
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 98 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 127
>gi|297621833|ref|YP_003709970.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
gi|297377134|gb|ADI38964.1| putative type III secretion translocase SctQ [Waddlia chondrophila
WSU 86-1044]
Length = 281
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 68/250 (27%), Gaps = 33/250 (13%)
Query: 46 LPKIFKEKMDLDVDISYTSCQSGKFSH--IIHSFKENFVFSQASLSSWSSNFFIGCSNNL 103
L + K ++ + + + S++S N +I
Sbjct: 38 LAENLKNLLEFQ-SLEIVPSEFVWAEEGAATKGMGSPLSIVKFSIASLEGNVYIAIPQEE 96
Query: 104 VITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDF 163
+ +++ LL E P + + ++ + Q I P LE
Sbjct: 97 IRKIMDLLLLKGSEPAPIDDD-----FQIAFLDFLTLEVMHAVRQ-IDYPPNLLPRLEKN 150
Query: 164 YDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQ 223
++ N + +N+ +T ++ S P+ + + SL +
Sbjct: 151 AEM----------PNTPMLVMNLTVTADSFVFS-----PRIMISEEMNRSLKEHYVKSKE 195
Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH------REKTCAIL 277
+ P + + +V + + +K G I L
Sbjct: 196 NAVFKRPLSDQC---DVIVHLEAGKTTLSQAQWKEVKPGDFILLDRCSLKPGENSGTVTL 252
Query: 278 SANGKEIYSC 287
+ G I
Sbjct: 253 TLKGHPILRG 262
>gi|330984965|gb|EGH83068.1| type III secretion protein HrcQb [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 129
Score = 41.2 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + L +++ R + TL ++ L G ++ A
Sbjct: 39 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 98
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 99 LCHGEQVVAEGELVDVEGRLGLQITRLVKR 128
>gi|71734621|ref|YP_273545.1| type III secretion component protein HrcQb [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|62510672|sp|O85094|HRCQB_PSESH RecName: Full=Type III secretion protein HrcQb
gi|3282780|gb|AAC25068.1| HrcQ2 [Pseudomonas syringae pv. phaseolicola]
gi|42562001|gb|AAS20443.1| HrcQb [Pseudomonas syringae pv. phaseolicola]
gi|71555174|gb|AAZ34385.1| type III secretion component protein HrcQb [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|320322954|gb|EFW79044.1| type III secretion protein hrcQb [Pseudomonas syringae pv. glycinea
str. B076]
Length = 128
Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + L +++ R + TL ++ L G ++ A
Sbjct: 38 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 97
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 98 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 127
>gi|237800002|ref|ZP_04588463.1| type III secretion protein HrcQb [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022857|gb|EGI02914.1| type III secretion protein HrcQb [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 136
Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
+ +Q ++ D D + L +++ R + +L ++ L G ++
Sbjct: 37 EQPEYAPAEAQESEQDHDHDRHDA-SSDFDSLALDLTLRCGELRLSLAELRRLDAGTILE 95
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
A L + + EL V ++IT
Sbjct: 96 VSGIAPGYATLCHADRVVAEGELVDVDGRLGLQITR 131
>gi|269138230|ref|YP_003294930.1| translocation protein in type III secretion [Edwardsiella tarda
EIB202]
gi|267983890|gb|ACY83719.1| translocation protein in type III secretion [Edwardsiella tarda
EIB202]
gi|304558273|gb|ADM40937.1| EsaQ [Edwardsiella tarda FL6-60]
Length = 304
Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + + + + G P LS G L R+ + +
Sbjct: 230 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 289
Query: 299 RITDRIN 305
RIT RI
Sbjct: 290 RITRRIP 296
>gi|62199643|gb|AAV69420.1| EsaQ [Edwardsiella tarda]
Length = 304
Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + + + + G P LS G L R+ + +
Sbjct: 230 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 289
Query: 299 RITDRIN 305
RIT RI
Sbjct: 290 RITRRIP 296
>gi|289623682|ref|ZP_06456636.1| type III secretion protein hrcQb [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289647644|ref|ZP_06478987.1| type III secretion protein hrcQb [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298485950|ref|ZP_07004025.1| type III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159536|gb|EFI00582.1| type III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330871286|gb|EGH05995.1| type III secretion protein HrcQb [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 129
Score = 40.8 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 220 SENQSEDLIDPFARK---TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAI 276
+ + + L +++ R + TL ++ L G ++ A
Sbjct: 39 TAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHAT 98
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINF 306
L + + EL V ++IT +
Sbjct: 99 LCHGEQVVAEGELVDVEGRLGLQITRLVTR 128
>gi|330957490|gb|EGH57750.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 238
Score = 40.8 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 176 LSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKT 235
E + + + ++ + L +TLL+ + Q E
Sbjct: 114 APTEPLIGCRIQVRLDAARINARLHTTPDTLLRLLGSASW-QALKRTVDESWS------- 165
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVI 265
V I TL+ + +L+ G V+
Sbjct: 166 ----VPTPLIIGEMSLTLEQIASLRPGDVV 191
>gi|61743021|gb|AAX55241.1| EsaQ [Edwardsiella tarda]
Length = 221
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 239 NVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTI 298
+ + + + + G P LS G L R+ + +
Sbjct: 147 EICLLAEAGRVSLSAQSLGEWAPGLETPLNAYAYPRLQLSLRGAPWAEGTLLRLDDGWAV 206
Query: 299 RITDRIN 305
RIT RI
Sbjct: 207 RITRRIP 213
>gi|188534811|ref|YP_001908608.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
gi|188029853|emb|CAO97734.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
Length = 308
Score = 40.8 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 205 TLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
T+ + + + + E D L V+I+ ++ TL ++ + G
Sbjct: 202 TVENQLINNRETYREEEEVLLDWTK--------LPVDIEFVLDKYTVTLAELEEITPGVA 253
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRV-GKNYTIRITDRINFDQK 309
+P + + N K EL + ++ + I
Sbjct: 254 LPLKPAAEKKIKIYLNRKLFACGELVALEDGSFAVEINQVTPGSVD 299
>gi|45504754|gb|AAS66845.1| YsaQ [Sodalis glossinidius]
Length = 285
Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
++ V ++ + L ++ L+ G V + + N + + G G
Sbjct: 227 SRVPVTVEFVLEANSYPLAELDNLQPGTVFDLSENVEKNIKIFLNQQLVGHGRTGDAG 284
Score = 39.2 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 199 LIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVT 258
L +P E L+ + + + + + D+V
Sbjct: 116 LALPGEDLIVHVADWPKQAFPQAQTASAWLKRL-------PFELRCVLGCSRLAALDLVR 168
Query: 259 LKIGQVIPFLHREKTCAILSANGKEIYSCE 288
L G ++ L+ NG+ I+SC
Sbjct: 169 LDTGDLLLITRP---ELHLAVNGRAIFSCH 195
>gi|229011055|ref|ZP_04168249.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
gi|228750227|gb|EEM00059.1| Flagellar motor switch protein [Bacillus mycoides DSM 2048]
Length = 74
Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 26/67 (38%)
Query: 236 YQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKN 295
+ + I I K ++D++ + G + + + ++ +EI + ++
Sbjct: 5 DDIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTENTVLIMLENEEIGTGKILTKNGK 64
Query: 296 YTIRITD 302
+ I +
Sbjct: 65 MYVEIVE 71
>gi|238752374|ref|ZP_04613852.1| Type III secretion system apparatus protein [Yersinia rohdei ATCC
43380]
gi|238709415|gb|EEQ01655.1| Type III secretion system apparatus protein [Yersinia rohdei ATCC
43380]
Length = 324
Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 10/160 (6%)
Query: 156 SSPNLEDFYDIDYLKKNTNRLSNEFVTTINM-NMTIENVASSFVLIIP--QETLLKTTLI 212
+L + L + + + + N + + P L +
Sbjct: 164 WQASLVVGWSRLSLHQLQQITPGDGLRISRAAELEQGN-CWLWQMAAPQMYIKLEDGNKM 222
Query: 213 SLSSQNKSENQSEDLIDPFARK------TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIP 266
++ N +Q +L K L + I + ++ L +GQ +
Sbjct: 223 TIQQVNDDIDQLLELDIALVEKNPQKVMLDNLPQTLVMEIGRLSLPMGELTQLAVGQTLA 282
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ +G+ + S L +RI +
Sbjct: 283 CQTHLYGEVNIRLHGQSVGSGSLLSCEGELLVRIDQWLTP 322
>gi|326430843|gb|EGD76413.1| hypothetical protein PTSG_07532 [Salpingoeca sp. ATCC 50818]
Length = 795
Score = 40.8 bits (94), Expect = 0.30, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL 289
+ + LK+++ L VI R++ ++ + ++
Sbjct: 358 THVSSSALASCAHLGSAAADLKELMELSP-DVIVLDDRKQDPLVVKCPQRTVFLARY 413
>gi|167905067|ref|ZP_02492272.1| hypothetical protein BpseN_22674 [Burkholderia pseudomallei NCTC
13177]
Length = 83
Score = 40.4 bits (93), Expect = 0.37, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
QL + + ++ DV+ L+ G V+P A + + ++++ +
Sbjct: 17 QLRLKLTAQLVEMSVPFGDVLRLRPGTVLPVRLHT--PARVMTHDAQLFTASIAEHNGKL 74
Query: 297 TI 298
+
Sbjct: 75 CL 76
>gi|40889181|pdb|1O9Y|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
Protein From Pseudomonas Syringae Pv. Phaseolicola
gi|40889182|pdb|1O9Y|B Chain B, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
Protein From Pseudomonas Syringae Pv. Phaseolicola
gi|40889183|pdb|1O9Y|C Chain C, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
Protein From Pseudomonas Syringae Pv. Phaseolicola
gi|40889184|pdb|1O9Y|D Chain D, Crystal Structure Of The C-Terminal Domain Of The Hrcqb
Protein From Pseudomonas Syringae Pv. Phaseolicola
Length = 84
Score = 40.4 bits (93), Expect = 0.38, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 26/73 (35%)
Query: 234 KTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVG 293
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 11 ALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVE 70
Query: 294 KNYTIRITDRINF 306
++IT +
Sbjct: 71 GRLGLQITRLVTR 83
>gi|168026410|ref|XP_001765725.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683151|gb|EDQ69564.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 4165
Score = 40.4 bits (93), Expect = 0.39, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 4/121 (3%)
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTI 190
E + + + I + E ++ + E + T ++
Sbjct: 2076 EPAVIRTFVGGIRKEETSAAGVGAGLLLDEESPSTETNIETAEQEPAEEIIETTALDRDD 2135
Query: 191 ENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKK 250
+ +P L + N D + +I+ R+ L K
Sbjct: 2136 FDQ----HECMPVILRLAEHVHVKFGANYQPGVMPDWMKSLHATLDNAATHINVRLFLAK 2191
Query: 251 T 251
Sbjct: 2192 V 2192
>gi|238897369|ref|YP_002923046.1| type III secretion system protein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465124|gb|ACQ66898.1| type III secretion system protein [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 320
Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 212 ISLSSQNKSENQSEDLIDPFARKTYQLNV-----NIDTRINLKKTTLKDVVTLKIGQVIP 266
+ S ++ + S D+I F + ++++ + I ++D+ L +G+ +
Sbjct: 220 KAPSDEDAPDASSPDVIPEFEEEPKKISLNEFTQTLVMEIGRINIPIQDLNQLFVGKTLN 279
Query: 267 FLHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
++ NG++I S L +RI
Sbjct: 280 CKTSFYGEVMIRLNGRKIGSGNLLNCDGELIVRIEQ 315
>gi|126698113|ref|YP_001087010.1| chemotaxis protein CheC [Clostridium difficile 630]
gi|115249550|emb|CAJ67367.1| Chemotaxis protein CheY-P phosphatase CheC [Clostridium difficile]
Length = 205
Score = 40.0 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 16/206 (7%), Positives = 54/206 (26%), Gaps = 18/206 (8%)
Query: 21 LTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN 80
+ L +G + ++ +V++ + +++ +
Sbjct: 1 MINYLELDDVHIDALREIGNIGSGNAITALASMINSNVEVLIPMVKILEYNEATNLLGGP 60
Query: 81 FVFSQASLSSWSSNF----FIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAK 136
L + ++ +L +L + ++ +E K
Sbjct: 61 ENKVVCILLDMKGDINGMFMFLLDESITQLMLSSLFNKEEAFLDEIE-----AIEISAIK 115
Query: 137 RTIAQISAVLNQCISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTIN--MN 187
+++ I++ + ++ + + + V I
Sbjct: 116 EIGNIMASSYVNAIASMLNMTISVSIPDICIDMVGAVLNVPMIRFSDVGDKVLFIENKFK 175
Query: 188 MTIENVASSFVLIIPQETLLKTTLIS 213
M+ S ++I +L K +
Sbjct: 176 MSDNYFTSHILMIPEMSSLKKILVRL 201
>gi|213968262|ref|ZP_03396406.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
T1]
gi|301381809|ref|ZP_07230227.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
Max13]
gi|302062000|ref|ZP_07253541.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
K40]
gi|302135082|ref|ZP_07261072.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926900|gb|EEB60451.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tomato
T1]
Length = 238
Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
E + + + + L ETLL + Q + + E
Sbjct: 116 AELTVGCRIQVRLADQQVHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + TL+ + +L+ G V+
Sbjct: 166 --ITTPLILGELSLTLEQLASLRPGDVL 191
>gi|188586046|ref|YP_001917591.1| CheC, inhibitor of MCP methylation [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350733|gb|ACB85003.1| CheC, inhibitor of MCP methylation [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 212
Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats.
Identities = 22/203 (10%), Positives = 50/203 (24%), Gaps = 14/203 (6%)
Query: 32 EKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ---ASL 88
I LG + + + + ++ F + +
Sbjct: 11 IDILKELGNIGAGNATTALSQFLGKSIKMTVPEVNILPFEEVPEVVGGPEELVAGVYMRI 70
Query: 89 SSWS-SNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLN 147
+ + + + L++ LLG + ++ L +E+ T ++
Sbjct: 71 EGEAPGSLMLLLKQEDALKLIDVLLG-RDSSQEKVGTADLDDIEQSALMETGNIVANSYL 129
Query: 148 QCIST--TQESSPNLEDFYDIDYLKKNTNRL------SNEFVTTINMNMTIENVASSFV- 198
++ E P++ L +E V I E
Sbjct: 130 NSLADMTKMEVGPSVPAISVDMAGAILEVILFQVDEEISEHVILIGTEFAYEGNTIRGHF 189
Query: 199 LIIPQETLLKTTLISLSSQNKSE 221
+IP + SL
Sbjct: 190 FLIPDNESFPKIIKSLGFDYDDS 212
>gi|146296305|ref|YP_001180076.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409881|gb|ABP66885.1| CheC, inhibitor of MCP methylation [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 205
Score = 39.6 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 12/150 (8%), Positives = 34/150 (22%), Gaps = 9/150 (6%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI---IHSFKENFVFSQASLS 89
+ LG + + +D+ + + + + V ++
Sbjct: 14 DVLRELGNIGTGNAISALAMMIGRRIDMKVPVVKMVDLKEVPEILGGAEIPVVGILLNVE 73
Query: 90 S-WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ S L+ LLG S + +EK ++
Sbjct: 74 GDIDGFIMLVMSQASAHILVNMLLGTSLNGYS-----EFTDIEKSALTEIGNILAGAYLT 128
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSN 178
+++ + +
Sbjct: 129 ALASLTGFKMIQSVPQLAEDMAGAILSFPA 158
>gi|330872916|gb|EGH07065.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 238
Score = 39.6 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
E + + + + L ETLL + Q + + E
Sbjct: 116 AELTVGCRIQVRLADQQIHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + TL+ + +L+ G V+
Sbjct: 166 --ITTPLILGELSLTLEQLASLRPGDVL 191
>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 125
Score = 39.6 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 26/62 (41%)
Query: 245 RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRI 304
+ K TL ++ + Q++ + + ANG + + EL ++ + I + +
Sbjct: 1 VLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGELVQMNDTLGVEIHEWL 60
Query: 305 NF 306
+
Sbjct: 61 SE 62
>gi|312972917|ref|ZP_07787090.1| surface presentation of antigens spaO domain protein [Escherichia
coli 1827-70]
gi|310332859|gb|EFQ00073.1| surface presentation of antigens spaO domain protein [Escherichia
coli 1827-70]
Length = 81
Score = 39.6 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 22/70 (31%)
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELG 290
L V I+ + K L ++ L ++ L + + NG EL
Sbjct: 1 MINSFEDLPVKIEFVLGKKIMNLYEIDELCAKRITSLLSESEKNIEIRVNGALTGYGELV 60
Query: 291 RVGKNYTIRI 300
V + I
Sbjct: 61 EVDDKLGVEI 70
>gi|1483321|emb|CAA68097.1| HrcQb protein [Pantoea agglomerans]
Length = 108
Score = 39.6 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRV 292
L ++++ R + TL ++ L++G+++ + A L I EL V
Sbjct: 31 IALLPLSLEVRCGRTRLTLGELQQLQLGRILTLDNMTPGEAGLYHGDTLIARGELVDV 88
>gi|153005188|ref|YP_001379513.1| cell surface receptor IPT/TIG domain-containing protein
[Anaeromyxobacter sp. Fw109-5]
gi|152028761|gb|ABS26529.1| cell surface receptor IPT/TIG domain protein [Anaeromyxobacter sp.
Fw109-5]
Length = 12684
Score = 39.6 bits (91), Expect = 0.65, Method: Composition-based stats.
Identities = 29/259 (11%), Positives = 75/259 (28%), Gaps = 26/259 (10%)
Query: 57 DVDISYTSCQSGKFSHIIHSFKENF--VFSQASLSSWSSNFFIGCSNNLVITL-LENLLG 113
VD++ + ++ + + ++LS ++ NL + G
Sbjct: 3125 MVDVAVAGRTVVTSTALVDQDAHPVKGLMTVSALSDAMTDAKPVVRANLSAAADVGIAAG 3184
Query: 114 ASHETIPQLYNRSLSTVEKKLAKRTIAQIS---AVLNQCIS-TTQESSPNLEDFYDIDYL 169
+ P+ S L + + ++ L+ +S L +
Sbjct: 3185 GAVALHPKSGAGPASVAGYVLPRLLVTGMTPPDGALDVALSTPDLAIEVELSAPVTLASA 3244
Query: 170 KKNTNRLSNEFVT--TINMNMTIENVASSFVLIIPQETLLKTTLISLSS-----QNKSEN 222
+ N + + + + + P E L L+ +
Sbjct: 3245 QANVVLREQDPAIGPVVEATIEVGDRRIYVR---PVEELRPARAYFLTVGTGLETDAQLP 3301
Query: 223 QSEDLIDPFARKTYQLNVNIDTRI--------NLKKTTLKDVVTLKIGQVIPFLHREKTC 274
++ F + + I + + ++ + ++ G + F RE T
Sbjct: 3302 LERRVVSSFRTRAVDAPLPIVSDVVPSAGPADGGTTVSIS-ALNVQEGARVFFSDREATE 3360
Query: 275 AILSANGKEIYSCELGRVG 293
+ A+G+ +G +G
Sbjct: 3361 VQVLADGRVSAKTPMGVLG 3379
>gi|330963053|gb|EGH63313.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 238
Score = 39.2 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
E + + + + L ETLL + Q + + E
Sbjct: 116 AELTVGCRIQVRLADQQIHAHLHATPETLLTLLRSAPW-QARLKPLDERWS--------- 165
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
+ + TL+ + +L+ G V+
Sbjct: 166 --ITTPLILGELSLTLEQLTSLRPGDVL 191
>gi|221640809|ref|YP_002527071.1| Surface presentation of antigens (SPOA) protein [Rhodobacter
sphaeroides KD131]
gi|221161590|gb|ACM02570.1| Surface presentation of antigens (SPOA) protein precursor
[Rhodobacter sphaeroides KD131]
Length = 51
Score = 38.9 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 265 IPFLHREKTCAILSANGKEIYSCEL----GRVGKNYTIRITDRIN 305
+P R L + I EL G +R+T+ N
Sbjct: 2 LPLDRRVDDPVELYVGDRLIGRGELTELEGEQAGQLAVRLTEVAN 46
>gi|325186837|emb|CCA21382.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 1749
Score = 38.9 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 18/160 (11%), Positives = 50/160 (31%), Gaps = 16/160 (10%)
Query: 117 ETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLK--KNTN 174
+ +RS + L + TI + + E + + + + +
Sbjct: 351 RFLSSSPSRSEHYAKLILGQATIERAIGNHSDAWELVLEFLQRFPEIFGVGNVDQYFDVA 410
Query: 175 RLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQS---EDLI--- 228
+ A++F +I+P +LL T +++ S +N +
Sbjct: 411 VRPR---VLAQIRAGFHGEAANFRMILPFVSLLPTKILAKSQKNSQLIVDILQQFWQFLC 467
Query: 229 DPFARKTYQLNVNIDTRINLKKTTL-----KDVVTLKIGQ 263
+ Q+ ++ + ++ ++ + L G
Sbjct: 468 KNGREREKQVALSSLFELLTASMSIFVLNDREELVLSFGD 507
>gi|330894463|gb|EGH27124.1| type III secretion protein HrcQb [Pseudomonas syringae pv. mori
str. 301020]
Length = 130
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 2/102 (1%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFAR--KTYQLNVNIDTRINLKKTTLKDVVTLKIGQV 264
+ S +E + L +++ R + TL ++ L G +
Sbjct: 28 EEEEDGEPSGYATAEPDDHAAQEEQDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTI 87
Query: 265 IPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINF 306
+ A L + EL V ++IT +
Sbjct: 88 LEVTGISPGHATLCHGEQVGAEGELVDVEGRLGLQITRLVTR 129
>gi|238927438|ref|ZP_04659198.1| chemotaxis protein CheC [Selenomonas flueggei ATCC 43531]
gi|238884720|gb|EEQ48358.1| chemotaxis protein CheC [Selenomonas flueggei ATCC 43531]
Length = 213
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 6/152 (3%), Positives = 26/152 (17%), Gaps = 9/152 (5%)
Query: 25 LGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFS 84
+ + +G + + ++++ + +
Sbjct: 14 AALSEAQLDVLREIGNVGAGNSATALSRLIKYRIEMNVPHVALVPIEEVPEFVGGPELVV 73
Query: 85 QASLSSWSS----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIA 140
N L++ L G +++
Sbjct: 74 AGIFLRVYGKAPSNILFLIPRESAFALVDTLYGRERGATS-----EFDLMDESALMEIGN 128
Query: 141 QISAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
++ + S +
Sbjct: 129 ILAGSYLNAFYSFTGISMLPSVPALAVDMAGA 160
>gi|237800003|ref|ZP_04588464.1| type III secretion protein HrcQa [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022858|gb|EGI02915.1| type III secretion protein HrcQa [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 238
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
E V + + + + L +TL+ + +
Sbjct: 116 AEPVVGCRIQVRLGDQRVHAHLHATPQTLITLLRSAQWQARQQP---------LDESLS- 165
Query: 238 LNVNIDTRINLKKTTLKDVVTLKIGQVI 265
VNI + TL+ + +L+ G V+
Sbjct: 166 --VNIPLIVGELSLTLEQLASLRPGDVV 191
>gi|304392513|ref|ZP_07374453.1| hypothetical protein R2A130_2112 [Ahrensia sp. R2A130]
gi|303295143|gb|EFL89503.1| hypothetical protein R2A130_2112 [Ahrensia sp. R2A130]
Length = 291
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 22/217 (10%), Positives = 52/217 (23%), Gaps = 24/217 (11%)
Query: 85 QASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISA 144
+ L L G + L+ ++L +
Sbjct: 69 ILATEP-DCGLTFTLDATAQAICLATLTGTKTVGSSHNIDGPLT---RELIIAIAKSVVG 124
Query: 145 VLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV----TTINMNMTIENVASSFVLI 200
T SP + + + + + + + E V L
Sbjct: 125 AFALASKITLPQSPVWKSQDTDSAKSGSQSVVLGIAIPQKRSAALLKQEFETVLGRITLN 184
Query: 201 IPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLK 260
I + + K+ Q +++ ++ +L + L+
Sbjct: 185 IDARLMK--VETPSAFIAKATTQD---------AVLTSEIDLRVTATARRMSLLSIGELQ 233
Query: 261 IGQVIPFLHREKTCAILSANGK--EIYSCELGRVGKN 295
+G VI + A+ K + + +V
Sbjct: 234 VGDVIGL---PDDKLSVRASTKDGPLLEGTMVQVNGQ 267
>gi|288871046|ref|ZP_06116175.2| putative metallophosphoesterase [Clostridium hathewayi DSM 13479]
gi|288864972|gb|EFC97270.1| putative metallophosphoesterase [Clostridium hathewayi DSM 13479]
Length = 686
Score = 38.5 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCEL- 289
+ L DV L+ + I+ NGK +Y ++
Sbjct: 355 LKHYIDDTKTAVPAYFFRTDIYLNDVSDLEA---LEAEIAYDDAVIVYINGKNVYEGQVP 411
Query: 290 -GRVGKNYT 297
G KN
Sbjct: 412 EGGYDKNLA 420
>gi|284164244|ref|YP_003402523.1| chemotaxis protein CheC [Haloterrigena turkmenica DSM 5511]
gi|284013899|gb|ADB59850.1| CheC, inhibitor of MCP methylation [Haloterrigena turkmenica DSM
5511]
Length = 418
Score = 38.5 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 11/161 (6%), Positives = 35/161 (21%), Gaps = 8/161 (4%)
Query: 16 ILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIH 75
LL RL G + + + + K +D + I
Sbjct: 196 ALLDRLRTSGGIEYDKLDGFDRMAERGAEEVAKTATTLTGIDTSVEIRRLNFVSLEAIPE 255
Query: 76 SFKENFVFSQ-ASLSSW-SSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKK 133
+ + S +++ + ++ +
Sbjct: 256 QVADQKLVGVAFEFDGMPSGYLLFLFDEESAHEIVDAM------VPMEVDEDGFGEMGTS 309
Query: 134 LAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTN 174
K +++ + +++ + I +
Sbjct: 310 AIKELGNIMASGFLDGWANVLDTTIDHSTPEFIHDMGAAAV 350
>gi|169234958|ref|NP_034209.2| desmoglein-1-alpha precursor [Mus musculus]
gi|60416372|sp|Q61495|DSG1A_MOUSE RecName: Full=Desmoglein-1-alpha; Short=Desmoglein-1;
Short=Dsg1-alpha; AltName: Full=DG1; AltName: Full=DGI;
AltName: Full=Desmosomal glycoprotein I; Flags:
Precursor
gi|148664530|gb|EDK96946.1| mCG140885 [Mus musculus]
gi|159155868|gb|AAI54411.1| Desmoglein 1 alpha [Mus musculus]
Length = 1057
Score = 38.5 bits (88), Expect = 1.5, Method: Composition-based stats.
Identities = 22/215 (10%), Positives = 52/215 (24%), Gaps = 29/215 (13%)
Query: 5 SIHKNTSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTS 64
+ P + LL +G S +G + K DIS
Sbjct: 724 ADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIGEDLDESFLDTLGPKFKKLADISLGK 783
Query: 65 CQSGKFSHIIHSFKENFV--FSQASLSSWSSNFFIGCSNNLVITLL---ENLLGASHETI 119
+ + S+ + S + T +
Sbjct: 784 -EIDSYPDSDPSWPPQSTEPMCPQHTEPL-GSGHPPISPHFGTTTVISENAYHSGPGVQH 841
Query: 120 PQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNE 179
P L + + +T+ P++ ++ +N + E
Sbjct: 842 PVPIPDPLGYGNVTV------------RESYTTSGTLKPSV----HFHDNQQASNVVVTE 885
Query: 180 FVTT------INMNMTIENVASSFVLIIPQETLLK 208
V ++ + I ++ +I+ + +
Sbjct: 886 RVVGPISGADLHGMLEIPDLRGGANVIVTERVIAP 920
>gi|315281354|ref|ZP_07869994.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|313614993|gb|EFR88497.1| flagellar motor switch protein [Listeria marthii FSL S4-120]
gi|328475657|gb|EGF46406.1| flagellar motor switch domain protein [Listeria monocytogenes 220]
Length = 54
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 23/53 (43%)
Query: 251 TTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
+ D+ L IG V+ + + + K++ E + +N+ I I++
Sbjct: 1 MPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEI 53
>gi|255028845|ref|ZP_05300796.1| flagellar motor switch protein [Listeria monocytogenes LO28]
Length = 85
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLH 269
R+ + VN+ R+ K+ + D+ L IG V+
Sbjct: 28 RQVDNIGVNLIVRLGKKEMPVGDIAELSIGDVLEVEK 64
>gi|257487232|ref|ZP_05641273.1| type III secretion component protein HrcQa [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|238577789|gb|ACR46700.1| HrcQa [Pseudomonas syringae pv. tabaci]
gi|331009154|gb|EGH89210.1| type III secretion protein HrcQa [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 238
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ + L +TLL+ + Q ++ E V
Sbjct: 122 CRVQIQRGGEQLHAHLHATPDTLLRLLQSAPW-QARTRTVDESWS-----------VASP 169
Query: 244 TRINLKKTTLKDVVTLKIGQVI 265
I TL+ + +L+ G V+
Sbjct: 170 LIIGEMSLTLEQIASLRPGDVV 191
>gi|330984966|gb|EGH83069.1| type III secretion protein HrcQa [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 238
Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 184 INMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNID 243
+ + L +TLL+ + Q ++ E V
Sbjct: 122 CRVQIQRGGEQLHAHLHATPDTLLRLLQSAPW-QARTRTVDESWS-----------VASP 169
Query: 244 TRINLKKTTLKDVVTLKIGQVI 265
I TL+ + +L+ G V+
Sbjct: 170 LIIGEMSLTLEQIASLRPGDVV 191
>gi|218672164|ref|ZP_03521833.1| flagellar motor switch protein [Rhizobium etli GR56]
Length = 142
Score = 37.7 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 3/42 (7%), Positives = 13/42 (30%)
Query: 233 RKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTC 274
+ +++ + + + ++ L G I +
Sbjct: 101 EMIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEP 142
>gi|224438105|ref|ZP_03659040.1| flagellum-specific ATP synthase [Helicobacter cinaedi CCUG 18818]
gi|313144545|ref|ZP_07806738.1| flagellum-specific ATP synthase FliI [Helicobacter cinaedi CCUG
18818]
gi|313129576|gb|EFR47193.1| flagellum-specific ATP synthase FliI [Helicobacter cinaedi CCUG
18818]
Length = 472
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 16/174 (9%), Positives = 55/174 (31%), Gaps = 6/174 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K K+ + +G + +P+ + ++ D+ + + S ++ + + A
Sbjct: 218 AKAPIKVIALIGER-GREVPEFIYKNLNNDLTNTILVVATSDDSPLMRKYGAFSAMAIAE 276
Query: 88 -LSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
S ++ + + + +G + P L + + +
Sbjct: 277 YFKSLGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKG--YPPSVLTLLPQLMERAGK-- 332
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
+ + L + D+ + +R + +N ++T + ++
Sbjct: 333 EDSVGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLNRDLTDMGIYPPINIL 386
>gi|150021311|ref|YP_001306665.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
gi|149793832|gb|ABR31280.1| CheC, inhibitor of MCP methylation [Thermosipho melanesiensis
BI429]
Length = 205
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 23/196 (11%), Positives = 54/196 (27%), Gaps = 20/196 (10%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKEN----FVFSQASL 88
+ + +G + + V+IS S + S+I F+
Sbjct: 11 DLLNEIGNIGTGNAATALSMMIGRKVEISVPSTKVVPISNIPFIFENPEEIVCAVKMKMQ 70
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ ++ V + + L G + I L + K +
Sbjct: 71 EDVEGEILLILNSITVKEITKLLTGIELQDITT-----LDEFSVSMLKEIGNIMCGSYVT 125
Query: 149 CISTTQESSPNLEDFYDIDYLKKN-------TNRLSNEFVTTINMNMTIENV----ASSF 197
+S N E + + +++ I ++ IE +
Sbjct: 126 ALSGFTNFFINPEPPEIAVDMISAILAEVSLQVSKTEDYILLIETSIEIEGIDKMLTGYL 185
Query: 198 VLIIPQETLLKTTLIS 213
+L+ +++L K
Sbjct: 186 LLLPDEQSLKKILEKL 201
>gi|33352148|emb|CAD91923.1| putative Na P-type ATPase [Physcomitrella patens]
Length = 1058
Score = 37.3 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
++ + VL+I T+ KT + S
Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
Q RI+ DV+T ++G +IP R L + +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180
>gi|292669756|ref|ZP_06603182.1| CheC family chemotaxis protein [Selenomonas noxia ATCC 43541]
gi|292648553|gb|EFF66525.1| CheC family chemotaxis protein [Selenomonas noxia ATCC 43541]
Length = 207
Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 7/129 (5%), Positives = 25/129 (19%), Gaps = 9/129 (6%)
Query: 26 GDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQ 85
+ + +G + + ++++ + +
Sbjct: 9 ELSEMQLDVLQEIGNVGAGNSATALSRLIQRRIEMNVPQVALVPIEDVPEFVGGPELVVV 68
Query: 86 ASLSSWSS----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQ 141
N L++ LLG L +++
Sbjct: 69 GIFLRVYGKAPSNILFLIPRESAFALVDTLLGRERGETT-----ELDAMDESALMEIGNI 123
Query: 142 ISAVLNQCI 150
++
Sbjct: 124 LAGSYLNAF 132
>gi|33352140|emb|CAD91919.1| putative Na P-type ATPase [Physcomitrella patens]
Length = 1058
Score = 37.3 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
++ + VL+I T+ KT + S
Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
Q RI+ DV+T ++G +IP R L + +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180
>gi|168055850|ref|XP_001779936.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens]
gi|162668650|gb|EDQ55253.1| Na+ P-type-ATPase [Physcomitrella patens subsp. patens]
Length = 1058
Score = 37.3 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
++ + VL+I T+ KT + S
Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
Q RI+ DV+T ++G +IP R L + +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180
>gi|257388203|ref|YP_003177976.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
12286]
gi|257170510|gb|ACV48269.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
12286]
Length = 197
Score = 37.3 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 10/125 (8%), Positives = 31/125 (24%), Gaps = 4/125 (3%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKE--NFVFSQASLSSWSSNFFIGCSNNLV 104
+ ++ ++ T I + S L +
Sbjct: 22 ANHLSQMTGMETEMEITKINFIDIPDIKTHIGDERQIGISIRMLEPPHGYILFLFNAENA 81
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY 164
L ++G ET + +E+ + +++ + E++ ++
Sbjct: 82 KKLASGMIGDMGETSDATDG--FTDMERSAIQEIGNIMTSGFIDGWANVLETTIDISTPN 139
Query: 165 DIDYL 169
Sbjct: 140 FTFGP 144
>gi|153954746|ref|YP_001395511.1| hypothetical protein CKL_2128 [Clostridium kluyveri DSM 555]
gi|219855210|ref|YP_002472332.1| hypothetical protein CKR_1867 [Clostridium kluyveri NBRC 12016]
gi|146347604|gb|EDK34140.1| CheC [Clostridium kluyveri DSM 555]
gi|219568934|dbj|BAH06918.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 198
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
+ + + ++ VDI+ F I S + + + +
Sbjct: 12 DALREVVNIGTGNAATALSQLINKKVDITVPDVNIVPFDDIFTSIEGDEIVVGVIVRILG 71
Query: 93 ---SNFFIGCSNNLVITLLENLLG 113
N + L+ L+G
Sbjct: 72 DAPGNILFIFEKETALELISMLMG 95
>gi|313895811|ref|ZP_07829365.1| putative chemotaxis protein CheC [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975236|gb|EFR40697.1| putative chemotaxis protein CheC [Selenomonas sp. oral taxon 137
str. F0430]
Length = 207
Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 15/173 (8%), Positives = 34/173 (19%), Gaps = 16/173 (9%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
+ +G + + ++++ K + +
Sbjct: 16 DVLQEIGNVGAGNSATALSRLIQHRIEMNVPHVALVKIEDVPEFVGGPELVVVGIFLRVY 75
Query: 93 S----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
N L + LLG P L +++ ++
Sbjct: 76 GKAPSNILFLIPRESAFALADTLLGRERGETP-----ELDAMDESALMEIGNILAGSYLN 130
Query: 149 CISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
T S I + + I N E+
Sbjct: 131 AFYTFTGMSMLPSVPALAVDMAGAILNVVLVQLGEMGDHALLIETNFQAEDRT 183
>gi|237734782|ref|ZP_04565263.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229382110|gb|EEO32201.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 865
Score = 36.9 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
+ V + I V + ++ I + Q QS + + + + +
Sbjct: 58 DFLVIILIFAAIISGVLGDIESTLVILIVIMINAILGTVQTVKAEQSLNSLKELSSPSAK 117
Query: 238 LNVNIDT-RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ + I K+ T+ D V L+ G IP R A + +
Sbjct: 118 VLRDGKVIEIPSKEVTIGDEVYLEAGDFIPADGRILENASMKVD 161
>gi|33352150|emb|CAD91924.1| putative Na P-type ATPase [Physcomitrella patens]
Length = 977
Score = 36.9 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
++ + VL+I T+ KT + S
Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
Q RI+ DV+T ++G +IP R L + +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180
>gi|33352142|emb|CAD91920.1| putative Na P-type ATPase [Physcomitrella patens]
Length = 977
Score = 36.9 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
++ + VL+I T+ KT + S
Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
Q RI+ DV+T ++G +IP R L + +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180
>gi|33352138|emb|CAD91918.1| putative Na P-type ATPase [Physcomitrella patens]
gi|33352146|emb|CAD91922.1| putative Na P-type ATPase [Physcomitrella patens]
Length = 938
Score = 36.9 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 23/115 (20%)
Query: 179 EFVTTINMNMTIENVASSFVLIIPQETL---------LKTTLISLSSQNKSENQSEDLID 229
++ + VL+I T+ KT + S
Sbjct: 80 TIAMVVSFAVKDYGEGGVLVLVIAFNTIVGFMQEYRAEKTMDALRKMASPSAKV------ 133
Query: 230 PFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
Q RI+ DV+T ++G +IP R L + +
Sbjct: 134 -IREGIQQ-------RISSTDVVPGDVLTFEVGDIIPADCRLMEVLNLEVDEALL 180
>gi|330507600|ref|YP_004384028.1| PIN domain-containing protein [Methanosaeta concilii GP-6]
gi|328928408|gb|AEB68210.1| PIN domain protein [Methanosaeta concilii GP-6]
Length = 605
Score = 36.9 bits (84), Expect = 4.4, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 264 VIPFLHREKTCAILSANGKEIYSCELGRVGKNYTIRITDRINFDQKSLKNF 314
++ +S + ++ +GR G IRI ++ +K
Sbjct: 541 ILWLDGMAGESVDVSVGDEPAFTATVGRRGD---IRIAKSSEMAKRIIKKM 588
>gi|320529407|ref|ZP_08030495.1| putative chemotaxis protein CheC [Selenomonas artemidis F0399]
gi|320138373|gb|EFW30267.1| putative chemotaxis protein CheC [Selenomonas artemidis F0399]
Length = 207
Score = 36.5 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 15/173 (8%), Positives = 34/173 (19%), Gaps = 16/173 (9%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWS 92
+ +G + + ++++ K + +
Sbjct: 16 DVLQEIGNVGAGNSATALSRLIQHRIEMNVPHVALVKIEDVPEFVGGPELVVVGIFLRVY 75
Query: 93 S----NFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
N L + LLG P L +++ ++
Sbjct: 76 GKAPSNILFLIPQESAFALADTLLGRERGETP-----ELDAMDESALMEIGNILAGSYLN 130
Query: 149 CISTTQESSPNLEDFY-------DIDYLKKNTNRLSNEFVTTINMNMTIENVA 194
T S I + + I N E+
Sbjct: 131 AFYTFTGMSMLPSVPALAVDMAGAILNVVLVQLGEMGDHALLIETNFQAEDRT 183
>gi|167755813|ref|ZP_02427940.1| hypothetical protein CLORAM_01329 [Clostridium ramosum DSM 1402]
gi|167704752|gb|EDS19331.1| hypothetical protein CLORAM_01329 [Clostridium ramosum DSM 1402]
Length = 865
Score = 36.5 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 1/104 (0%)
Query: 178 NEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQ 237
+ V + I V + ++ I + Q QS + + + + +
Sbjct: 58 DFLVIILIFAAIISGVLGDIESTLVILIVITINAILGTVQTVKAEQSLNSLKELSSPSAK 117
Query: 238 LNVNIDT-RINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ + I K+ T+ D V L+ G IP R A + +
Sbjct: 118 VLRDGKVIEIPSKEVTIGDEVYLEAGDFIPADGRILENASMKVD 161
>gi|257386983|ref|YP_003176756.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
12286]
gi|257169290|gb|ACV47049.1| CheC, inhibitor of MCP methylation [Halomicrobium mukohataei DSM
12286]
Length = 211
Score = 36.5 bits (83), Expect = 5.2, Method: Composition-based stats.
Identities = 9/160 (5%), Positives = 39/160 (24%), Gaps = 12/160 (7%)
Query: 47 PKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS--LSSWSSNFFIGCSNNLV 104
+ +D + + + + + +
Sbjct: 25 ADHLSQLTGVDASVRTSQINFLDIGDVKTHLGNDERIGIYVELTEAPGGYVLFVLDPDHG 84
Query: 105 ITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQE-----SSPN 159
L ++G + S +E+ + +++ + + ++P+
Sbjct: 85 KRLAGQMMGGIQG-----ADEGFSEMEESALQEIGNIMTSGFIDGWANVLDATIDMTTPS 139
Query: 160 LEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
L + ++ V ++ ++ E +
Sbjct: 140 LLVDDTATIIDSMGGWPDSDLVFVVDSHIVAEGADIDMTV 179
>gi|323186702|gb|EFZ72024.1| flagellar motor switch protein fliN domain protein [Escherichia
coli RN587/1]
Length = 39
Score = 36.5 bits (83), Expect = 5.3, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 277 LSANGKEIYSCELGRVGKNYTIRITDRINFDQKS 310
+ NG I E+ V Y +RITD I ++
Sbjct: 1 ILINGYLIAQGEVVVVADKYGVRITDIITPSERM 34
>gi|292655360|ref|YP_003535257.1| taxis cluster protein CheC [Haloferax volcanii DS2]
gi|291371492|gb|ADE03719.1| taxis cluster protein CheC [Haloferax volcanii DS2]
Length = 395
Score = 36.5 bits (83), Expect = 5.6, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 10/177 (5%)
Query: 33 KISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFK--ENFVFSQASLSS 90
+ S L + + +D ++ T + G S + + F +
Sbjct: 9 RTFSRLAHSGAEKAAGSLTTLAGIDTYVNVTKVELGTKSDVENEFAERDLVSVHIGFSGG 68
Query: 91 WSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCI 150
+ + S L++ L+ T S E +A + +
Sbjct: 69 LDGHTVLAFSPESAERLVDALMPGIDATDADGELAESSLKE--VANIMLGGFIDGWADYL 126
Query: 151 STTQES-SPNLEDFYDI-----DYLKKNTNRLSNEFVTTINMNMTIENVASSFVLII 201
TT + +P D + + N +E V + + A F L +
Sbjct: 127 DTTVDITTPTYVDDENDGPLDRVDAEGFENGGDDEHVLVFRNQLEAADNAIEFDLYM 183
>gi|309806986|ref|ZP_07700968.1| copper-exporting ATPase [Lactobacillus iners LactinV 03V1-b]
gi|308166606|gb|EFO68803.1| copper-exporting ATPase [Lactobacillus iners LactinV 03V1-b]
Length = 698
Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V +LL L+ + K+ ++ D + A+ + ++
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239
>gi|309804631|ref|ZP_07698696.1| copper-exporting ATPase [Lactobacillus iners LactinV 09V1-c]
gi|329920456|ref|ZP_08277188.1| copper-exporting ATPase [Lactobacillus iners SPIN 1401G]
gi|308166023|gb|EFO68241.1| copper-exporting ATPase [Lactobacillus iners LactinV 09V1-c]
gi|328936132|gb|EGG32585.1| copper-exporting ATPase [Lactobacillus iners SPIN 1401G]
Length = 698
Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V +LL L+ + K+ ++ D + A+ + ++
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239
>gi|259500980|ref|ZP_05743882.1| copper-exporting ATPase [Lactobacillus iners DSM 13335]
gi|259167674|gb|EEW52169.1| copper-exporting ATPase [Lactobacillus iners DSM 13335]
Length = 681
Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V +LL L+ + K+ ++ D + A+ + ++
Sbjct: 138 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 194
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 195 TRPVADLKVGDLIRVQAGENVPADGTIE 222
>gi|325913161|ref|ZP_08175531.1| copper-exporting ATPase [Lactobacillus iners UPII 60-B]
gi|325477582|gb|EGC80724.1| copper-exporting ATPase [Lactobacillus iners UPII 60-B]
Length = 690
Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V +LL L+ + K+ ++ D + A+ + ++
Sbjct: 147 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 203
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 204 TRPVADLKVGDLIRVQAGENVPADGTIE 231
>gi|312871534|ref|ZP_07731627.1| copper-exporting ATPase [Lactobacillus iners LEAF 3008A-a]
gi|311092929|gb|EFQ51280.1| copper-exporting ATPase [Lactobacillus iners LEAF 3008A-a]
Length = 698
Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V +LL L+ + K+ ++ D + A+ + ++
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239
>gi|302190570|ref|ZP_07266824.1| copper-exporting ATPase [Lactobacillus iners AB-1]
Length = 698
Score = 36.5 bits (83), Expect = 5.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 193 VASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTT 252
V +LL L+ + K+ ++ D + A+ + ++
Sbjct: 155 VEQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIE 211
Query: 253 LKDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 212 TRPVADLKVGDLIRVQAGENVPADGTIE 239
>gi|17228018|ref|NP_484566.1| hypothetical protein alr0522 [Nostoc sp. PCC 7120]
gi|9957317|gb|AAG09315.1| hypothetical protein [Nostoc sp. PCC 7120]
gi|17129867|dbj|BAB72480.1| alr0522 [Nostoc sp. PCC 7120]
Length = 312
Score = 36.2 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
+ Q V ++ ++ K + LK+G I E + A +
Sbjct: 29 RSRIQQLIEQGKVQVNGKVCTSKK-----INLKVGDRITLEVPEAQPLEIQAEDIPL 80
>gi|75909134|ref|YP_323430.1| ribosomal large subunit pseudouridine synthase D [Anabaena
variabilis ATCC 29413]
gi|75702859|gb|ABA22535.1| ribosomal large subunit pseudouridine synthase D [Anabaena
variabilis ATCC 29413]
Length = 312
Score = 36.2 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEI 284
+ Q V ++ ++ K + LK+G I E L A +
Sbjct: 29 RSRIQQLIEQGKVQVNGKVCTSKK-----INLKVGDRITLEVPEAQPLELQAEDIPL 80
>gi|253576153|ref|ZP_04853485.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844496|gb|EES72512.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 315
Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 6/81 (7%), Positives = 17/81 (20%), Gaps = 3/81 (3%)
Query: 207 LKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKT---TLKDVVTLKIGQ 263
+ + E + + + + + +K L G
Sbjct: 12 EEKLEWVAGPADAKERIDKYAKTQLGEEFSRSQIQLWIEAGNLVVNGAPVKANYKLAEGD 71
Query: 264 VIPFLHREKTCAILSANGKEI 284
I + E + +
Sbjct: 72 RIVLVIPEAEPTEIVPEDIPL 92
>gi|207109698|ref|ZP_03243860.1| flagellar motor switch protein FliY [Helicobacter pylori
HPKX_438_CA4C1]
Length = 164
Score = 36.2 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 235 TYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKT 273
+ +N+ RI KK LKDVV++ IG V+
Sbjct: 126 LLDVKLNVKVRIGQKKMILKDVVSMDIGSVVELDQLVND 164
>gi|118588367|ref|ZP_01545776.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614]
gi|118439073|gb|EAV45705.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614]
Length = 602
Score = 36.2 bits (82), Expect = 6.8, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 57/167 (34%), Gaps = 7/167 (4%)
Query: 15 PILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHII 74
P++L + G + + + + ++ + ++ S +G++S +
Sbjct: 186 PVILIPILGFGRQVRKRSRFAQDTLAEASAYASEMLGS-VRTLQAFTHESLSAGRYSDAV 244
Query: 75 HSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKL 134
+ + + + ++ + + ++V L +GAS ++ LS L
Sbjct: 245 NEAFQAARQAIVARAALTGFAIMVIGASIVAVL---WIGASDVFAGRITGGELSQF--LL 299
Query: 135 AKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
A A L++ +++ E ++ ++ V
Sbjct: 300 YSILAAGSLAALSEVWGELSQAAGAAERLSELLEIQP-EIAAPANPV 345
>gi|51892676|ref|YP_075367.1| chemotaxis signal transduction protein [Symbiobacterium
thermophilum IAM 14863]
gi|51856365|dbj|BAD40523.1| chemotaxis signal transduction protein [Symbiobacterium
thermophilum IAM 14863]
Length = 198
Score = 35.8 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 9/150 (6%), Positives = 33/150 (22%), Gaps = 10/150 (6%)
Query: 27 DKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHI--IHSFKENFVFS 84
+ + + + + ++ + + + ++ V +
Sbjct: 4 QPSQWTALEQMVTQALAES-SRSLSQMTTGEIRLDAPQLSFVPLRELPGVAGGPDHVVTA 62
Query: 85 QASL--SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQI 142
+ + L++ LLG P R L + +
Sbjct: 63 VYVGIEGELQGHVILLFQPKEARALVDLLLG-----HPAGTCRELDELGRSALAEVGNIC 117
Query: 143 SAVLNQCISTTQESSPNLEDFYDIDYLKKN 172
+ I+ ++ +
Sbjct: 118 GSAFMNAIADRSGLEVKPTPPVLLEDMAGA 147
>gi|303235480|ref|ZP_07322093.1| copper-exporting ATPase [Prevotella disiens FB035-09AN]
gi|302484347|gb|EFL47329.1| copper-exporting ATPase [Prevotella disiens FB035-09AN]
Length = 716
Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+LL L+ + K+ ++ D + A+ + ++
Sbjct: 172 EQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIET 228
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 229 RPVADLKVGDLIRVQAGENVPADGTIE 255
>gi|154174001|ref|YP_001407433.1| flagellum-specific ATP synthase [Campylobacter curvus 525.92]
gi|112803229|gb|EAU00573.1| flagellar protein export ATPase FliI [Campylobacter curvus 525.92]
Length = 435
Score = 35.8 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 55/171 (32%), Gaps = 6/171 (3%)
Query: 30 TIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS-L 88
K+ + +G + +P+ ++ + ++D + + S ++ + S A
Sbjct: 185 APIKVVALIGER-GREVPEFIEKNLGGNLDGTVIVVATSDDSSLMRKYGAFCAMSVAEYF 243
Query: 89 SSWSSNFFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
+ ++ + + + +G + P S+ L + + + +
Sbjct: 244 KNQGNDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSS--LTLLPQLMERAGK--EE 299
Query: 149 CISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVL 199
+ L + D+ + +R + ++ +T + +
Sbjct: 300 GKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINI 350
>gi|291277238|ref|YP_003517010.1| flagellum-specific ATP synthase [Helicobacter mustelae 12198]
gi|290964432|emb|CBG40282.1| flagellum-specific ATP synthase [Helicobacter mustelae 12198]
Length = 434
Score = 35.8 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 14/174 (8%), Positives = 54/174 (31%), Gaps = 6/174 (3%)
Query: 28 KKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQAS 87
K K+ + +G + +P+ ++ +D +++ + + S ++ + + A
Sbjct: 181 SKAPIKVVALIGER-GREVPEFIQKNLDNNLENTVIVVATSDDSALMRKYGAFSAMAVAE 239
Query: 88 LSSWSSN-FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVL 146
+ + + + +G + P L + + +
Sbjct: 240 FFKNQGHDVLFIMDSVTRFAMAQREIGLALGEPPTSKG--YPPSVLALLPQLMERAGK-- 295
Query: 147 NQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLI 200
+ + L + D+ + +R + ++ +T + ++
Sbjct: 296 EEGRGSITAFFTVLVEGDDLSDPIADQSRSILDGHIVLSRELTDFGIYPPIHIL 349
>gi|227500140|ref|ZP_03930210.1| copper-exporting ATPase [Anaerococcus tetradius ATCC 35098]
gi|227217757|gb|EEI83059.1| copper-exporting ATPase [Anaerococcus tetradius ATCC 35098]
Length = 697
Score = 35.8 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 194 ASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTL 253
+LL L+ + K+ ++ D + A+ + ++
Sbjct: 155 EQIMDFFFEFASLLLIMLLGHWIEMKAIGEAGDAQEELAKLV---PKDAHVVLDDDSIET 211
Query: 254 KDVVTLKIGQVIPFLHREKTCAILSAN 280
+ V LK+G +I E A +
Sbjct: 212 RPVADLKVGDLIRVQAGENVPADGTIE 238
>gi|57640572|ref|YP_183050.1| chemotaxis protein cheC [Thermococcus kodakarensis KOD1]
gi|57158896|dbj|BAD84826.1| chemotaxis protein cheC [Thermococcus kodakarensis KOD1]
Length = 207
Score = 35.8 bits (81), Expect = 9.6, Method: Composition-based stats.
Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 12/186 (6%)
Query: 48 KIFKEKMDLDVDISYTSCQSGKFSHIIHSFK----ENFVFSQASL-SSWSSNFFIGCSNN 102
E + +++ + + N + +
Sbjct: 24 TSLSEMVGGPIEMEPPEVEVLSRVEFLKRLTQNGISNSFVVAFDITEGLGGLTVLQFPTK 83
Query: 103 LVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSP---- 158
I L L+G + +L S + + + I+ + +L + + SP
Sbjct: 84 SAINLSAALMGMDPSGMKELDEMGKSAITE-VGNILISVYTDILAKLVGEPVSLSPPKPI 142
Query: 159 -NLEDFYDIDYLKKNTNRLSNEFVTTINMNMTIENVASSFVLIIPQETLLKTTLISLSSQ 217
+L D N + S F L+ +E+ K +
Sbjct: 143 NSLYDIEKELNRPDLRNVD-KIMLFKTRFYEENIGFESFFYLVPDEESFEKLVKRLEAQV 201
Query: 218 NKSENQ 223
+ +
Sbjct: 202 KEEGGE 207
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.138 0.316
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,670,758,375
Number of Sequences: 14124377
Number of extensions: 51294873
Number of successful extensions: 199240
Number of sequences better than 10.0: 2892
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 193456
Number of HSP's gapped (non-prelim): 3245
length of query: 318
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 179
effective length of database: 2,879,505,227
effective search space: 515431435633
effective search space used: 515431435633
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 81 (35.8 bits)