RPSBLAST alignment for GI: 254780687 and conserved domain: TIGR01397
>gnl|CDD|130464 TIGR01397, fliM_switch, flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself. Length = 320
Score = 59.6 bits (145), Expect = 9e-10
Identities = 42/262 (16%), Positives = 98/262 (37%), Gaps = 14/262 (5%)
Query: 50 FKEKMDLDVDISYTSCQSGKFSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLE 109
+ V++S S + + S + + I +L+ T+++
Sbjct: 67 LSNMLRRFVEVSVASVDQLTYGEFLRSLPVPTSLNVFRMEPLRGTALIEIDPSLIYTMVD 126
Query: 110 NLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYL 169
L G ++P+ R + +E+++ R + ++ L + S P L+
Sbjct: 127 RLFGGQGRSVPE--GREFTEIERRVIDRILDRVLEDLKEAWSPVMPLEPELDR------S 178
Query: 170 KKNTNRLS----NEFVTTINMNMTIENVASSFVLIIPQETL--LKTTLISLSSQNKSENQ 223
+ N NE V ++ ++ + + +P TL +++ L Q++ +
Sbjct: 179 ETNPQFAQIVPPNEIVVLVSFSVEVGETEGMINICLPYSTLEPIRSKLSQRFMQSEKVER 238
Query: 224 SEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKE 283
D R+ + V++ + + +L+ ++ L++G VIP L G+
Sbjct: 239 DSSWRDALERELSTVPVDMRAVLGEVEVSLRQLLNLQVGDVIPLNTDMPEEVSLRVGGRP 298
Query: 284 IYSCELGRVGKNYTIRITDRIN 305
+ + G G ++IT I
Sbjct: 299 KFRAQPGVRGGKLAVQITRVIE 320