RPSBLAST alignment for GI: 254780687 and conserved domain: COG1886

>gnl|CDD|32070 COG1886, FliN, Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 136

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 189 TIENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINL 248
             E  A S +    +E       ++ S+  +S N+S DL+         + V +   +  
Sbjct: 29  GSEATADSLLYKSVKEVAFAEVELTESTVLESLNESIDLLL-------DIPVRLSVELGR 81

Query: 249 KKTTLKDVVTLKIGQVIPF-LHREKTCAILSANGKEIYSCELGRVGKNYTIRITD 302
            K  L +++ L  G VI       +   IL  NG+ I   E+  V   + +RIT+
Sbjct: 82  TKMPLGELLALGKGSVIELDKLAGEPVDIL-VNGRLIGRGEVVVVDDKFGVRITE 135