RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780687|ref|YP_003065100.1| flagellar C-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
(318 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 58.0 bits (140), Expect = 2e-09
Identities = 59/375 (15%), Positives = 105/375 (28%), Gaps = 184/375 (49%)
Query: 31 IEKISSSLGYLYKKFLP----KIFKEKMDL-----------DVD------IS-------- 61
I+ + +L L + K+F + +++ D D IS
Sbjct: 188 IKFSAETLSELIR--TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 62 ----YTSCQS-----GKFSHII-----HSFKENFVFSQ--------ASLSSWSS---N-- 94
+ + G+ + HS Q A SW S +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHS--------QGLVTAVAIAETDSWESFFVSVR 297
Query: 95 ------FFIGCSNNLVITLLENLLGASHETIPQLYNRSLSTVEKKLAKRTIAQISAVLNQ 148
FFIG +E P N SL ++L
Sbjct: 298 KAITVLFFIGV--------------RCYEAYP---NTSLP--------------PSILED 326
Query: 149 CISTTQESSPN------------LEDFYDID----YLKKNTNRLSNEFVTTINMNMTIEN 192
+ E P+ ++D+ ++ +L ++ ++ +N
Sbjct: 327 SLE-NNEGVPSPMLSISNLTQEQVQDY--VNKTNSHLPAG-KQVE---ISLVNG------ 373
Query: 193 VASSFVLIIPQETL--LKTTL--ISLSSQNKSENQSEDLIDPFA-RKTYQLNVNIDTRIN 247
A + V+ P ++L L TL S +QS I PF+ RK + R
Sbjct: 374 -AKNLVVSGPPQSLYGLNLTLRKAKAPS---GLDQSR--I-PFSERK-----LKFSNRF- 420
Query: 248 LKKTTLKDVVTLKIGQVIPFLH-------REKTCAILSANGKEIYSCELG------RVGK 294
L + PF H + L N + ++ G
Sbjct: 421 -----------LPVA--SPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 295 NYTIR-----ITDRI 304
+ +R I++RI
Sbjct: 467 D--LRVLSGSISERI 479
Score = 55.3 bits (133), Expect = 2e-08
Identities = 67/406 (16%), Positives = 112/406 (27%), Gaps = 139/406 (34%)
Query: 10 TSPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDISYTSCQSGK 69
T+P L+ + G + K+ L L F+ DI
Sbjct: 55 TTPAE--LVGKFLGYVSSLVEPSKVGQFDQVL-NLCL-TEFENCYLEGNDI--------- 101
Query: 70 FSH-IIHSFKENFVFSQASLSSWSSNFFIGCSN-NLVITLLEN--LLGASHETIPQLY-- 123
H + + + N+ N L A E QL
Sbjct: 102 --HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 124 -----N--------RSLSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFY----DI 166
N R L L I + L++ I TT ++ E + +I
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA----EKVFTQGLNI 215
Query: 167 -DYLKKNTNRLSNEF--------------------VTTINMNMTIENVASSFV------- 198
++L+ +N ++ VT + T + S
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 199 -LIIP------------QETLLK--TTL--ISLSSQNKSENQS------EDLID-----P 230
L+ ++ K T L I + N S ED ++ P
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 231 FARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANG--------- 281
+ L+++ NL + ++D + + L K I NG
Sbjct: 336 ----SPMLSIS-----NLTQEQVQDY----VNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 282 -KEIYSCELGRVGKNYTIR-I-----TD--RINFDQKSLK---NFL 315
+ +Y G N T+R D RI F ++ LK FL
Sbjct: 383 PQSLY-------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal
proteolytic fragment of TM0680A, structural genomics,
JCSG, PSI; 1.85A {Thermotoga maritima} SCOP: b.139.1.1
PDB: 1yab_A
Length = 96
Score = 54.7 bits (132), Expect = 3e-08
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 216 SQNKSENQSEDLIDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCA 275
S+ + D ++ + + + + + TLK V+ + G +I
Sbjct: 1 SETRKTEVPSDKLELL----LDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPV 56
Query: 276 ILSANGKEIYSCELGRVGKNYTIRITDRINFDQ--KSLK 312
+ NGK I E+ + +N+ +RIT+ ++ + + L
Sbjct: 57 DILVNGKLIARGEVVVIDENFGVRITEIVSPKERLELLN 95
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system,
phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP:
b.139.1.1
Length = 84
Score = 46.7 bits (111), Expect = 8e-06
Identities = 13/68 (19%), Positives = 26/68 (38%)
Query: 237 QLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSCELGRVGKNY 296
L +++ R + TL ++ L G ++ A L + + EL V
Sbjct: 14 SLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRL 73
Query: 297 TIRITDRI 304
++IT +
Sbjct: 74 GLQITRLV 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.1 bits (74), Expect = 0.082
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 27 DKKTIEKISSSLGYLY-KKFLPKI-FKEKMD 55
+K+ ++K+ +SL LY P + K M+
Sbjct: 18 EKQALKKLQASLK-LYADDSAPALAIKATME 47
>2arr_A Plasminogen activator inhibitor-2; serpin, peptide binding, peptide
binding protein; 1.55A {Homo sapiens} PDB: 2arq_A 1jrr_A
1by7_A
Length = 382
Score = 28.0 bits (61), Expect = 2.6
Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 70 FSHIIHSFK-ENFVFSQASLSSWSSNFFIGCSNN----LVITLLENLLGASHETIPQLYN 124
F H+ + +N S S+SS + ++G + + L N +GA+ + I +
Sbjct: 16 FKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMASVLQFNEVGAAADKIHSSFR 75
Query: 125 RSLSTVEKKLAKRTIAQISAV-LNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTT 183
S + + ++ + + S +E + +Y + + + E
Sbjct: 76 SLSSAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKK 135
Query: 184 IN 185
IN
Sbjct: 136 IN 137
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase,
product complex, structural genomics, PSI, protein
structure initiative; 1.50A {Mycobacterium tuberculosis}
SCOP: d.58.28.1
Length = 203
Score = 27.6 bits (61), Expect = 3.4
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 132 KKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDI-----DYLKKNTNR 175
K++A TIA + A E SP DF++ DYL++ N
Sbjct: 125 KRIALDTIADVEASGLWPGKVVTEVSP-AGDFWEAEPEHQDYLQRYPNG 172
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 27.6 bits (60), Expect = 3.7
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 11 SPLHPILLARLTGKLGDKKTIEKISSSLGYLYKKFLPKIFKEKMDLDVDI 60
+ L KLG ++ L K ++ D DI
Sbjct: 14 AADEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADI 63
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural
genomics, PSI-2, protein structure initiative; 1.55A
{Listeria innocua}
Length = 101
Score = 27.8 bits (62), Expect = 3.8
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
++ AI+S NGK I L N I +
Sbjct: 6 DEVVAIISQNGKVIREIPLTGHKGNEQFTIKGK 38
>3f1s_A Protein Z-dependent protease inhibitor; PZ, ZPI, complex, serpin,
protease inhibitor, protease, glycoprotein,
polymorphism, secreted; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 385
Score = 27.5 bits (60), Expect = 3.9
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 1/100 (1%)
Query: 70 FSHIIHSFKENFVFSQASLSSWSSNFFIGCSNNLVITLLENL-LGASHETIPQLYNRSLS 128
I N VFS +S + +G + + L L A T P L
Sbjct: 28 LRKISMRHDGNMVFSPFGMSLAMTGLMLGATGPTETQIKRGLHLQALKPTKPGLLPSLFK 87
Query: 129 TVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDY 168
+ + L++ ++ I + + +
Sbjct: 88 GLRETLSRNLELGLTQGSFAFIHKDFDVKETFFNLSKRYF 127
>1sek_A Serpin K; serine protease inhibitor, protease; 2.10A {Manduca
sexta} SCOP: e.1.1.1 PDB: 1k9o_I
Length = 378
Score = 27.5 bits (60), Expect = 4.1
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 6/120 (5%)
Query: 70 FSHIIHSFK-ENFVFSQASLSSWSSNFFIGCSNNLVITL--LENLLGASHETIPQLYNRS 126
FS ++ + +N V S S+ + + L L ++ + +
Sbjct: 23 FSEVVKANPGQNVVLSAFSVLPPLGQLALASVGE---SHDELLRALALPNDNVTKDVFAD 79
Query: 127 LSTVEKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFVTTINM 186
L+ + + + S + + + ++ S E IN
Sbjct: 80 LNRGVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINK 139
>2r9y_A Alpha-2-antiplasmin; inhibitory serpin, plasmin inhibitor, acute
phase, glycoprotein, protease inhibitor, secreted,
serine protease inhibitor; 2.65A {Mus musculus}
Length = 430
Score = 27.1 bits (59), Expect = 5.4
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 78 KENFVFSQASLSSWSSNFFIGCSNNLVITLLENLLGASHETIPQL---YNRSLSTVEKKL 134
N V S S++ S+ +G N + +L L + +P L + ++L +L
Sbjct: 42 SSNLVLSPLSVALALSHLALGAQNQTLHSLHRVLHMNTGSCLPHLLSHFYQNLGPGTIRL 101
Query: 135 AKRTIAQISAVLNQC 149
A R Q +
Sbjct: 102 AARIYLQKGFPIKDD 116
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 295
Score = 27.2 bits (59), Expect = 5.6
Identities = 6/88 (6%), Positives = 19/88 (21%), Gaps = 2/88 (2%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREKTCAILSANGKEIYSC 287
+ + + + + + ++ + C LS
Sbjct: 48 VCEDSITVGMVR-HQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGL 106
Query: 288 ELGRVGKNY-TIRITDRINFDQKSLKNF 314
G + R+ + + F
Sbjct: 107 YEGTGRLFFEFYRLLHDARPKEGDDRPF 134
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; NMR {Listeria innocua}
Length = 114
Score = 26.7 bits (59), Expect = 7.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 271 EKTCAILSANGKEIYSCELGRVGKNYTIRITDR 303
++ AI+S NGK I L N I +
Sbjct: 6 DEVVAIISQNGKVIREIPLTGHKGNEQFTIKGK 38
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 26.7 bits (58), Expect = 7.7
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 190 IENVASSFVLIIPQETLLKTTLISLSSQNKSENQSEDLIDPFARKTYQLNVNIDTRINLK 249
+ V +L+I + IS +N + N + L+ A KT L +
Sbjct: 94 QDFVGIICLLVI-------NSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAA 146
Query: 250 KTTLKDVVTLKIGQVIP 266
D+V++K+G +IP
Sbjct: 147 ILVPGDIVSIKLGDIIP 163
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 26.3 bits (57), Expect = 8.0
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 228 IDPFARKTYQLNVNIDTRINLKKTTLKDVVTLKIGQVIPFLHREK 272
+ A +TY+ N D + ++D+ V E
Sbjct: 118 WNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEH 162
>2v95_A Corticosteroid-binding globulin; transport protein, CBG, RCL,
serpin, secreted, transport, glycoprotein,
lipid-binding, glucocorticoids; HET: HCY; 1.93A {Rattus
norvegicus}
Length = 371
Score = 26.4 bits (57), Expect = 8.2
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 79 ENFVFSQASLSSWSSNFFIGCSNN-LVITLLENLLGASHETIPQLY-------NRSLSTV 130
+N + S S+S + +G + + +L NL S I Q + +S + +
Sbjct: 31 KNTLISPVSISMALAMVSLGSAQTQSLQSLGFNLTETSEAEIHQSFQYLNYLLKQSDTGL 90
Query: 131 EKKLAKRTIAQISAVLNQCISTTQESSPNLEDFYDIDYLKKNTNRLSNEFV 181
E + L + E ++ N+ V
Sbjct: 91 EMNMGNAMFLLQKLKLKDSFLADVKQYYESEALAIDFEDWTKASQQINQHV 141
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.132 0.365
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,501,897
Number of extensions: 109600
Number of successful extensions: 339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 40
Length of query: 318
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 226
Effective length of database: 3,462,782
Effective search space: 782588732
Effective search space used: 782588732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)