HHsearch alignment for GI: 254780688 and conserved domain: COG1886

>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion].

Probab=99.91  E-value=5.5e-24  Score=156.67  Aligned_cols=82  Identities=41%  Similarity=0.799  Sum_probs=75.5

Q ss_pred             CCCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEE
Q ss_conf             33342310002343055138999992134429999457978899847778880699999989999999995688870558
Q gi|254780688|r   59 NNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGV  138 (147)
Q Consensus        59 ~~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gv  138 (147)
T Consensus        55 ~~~~~~~~~~~~~l~dipv~v~velGr~~~~l~eLl~l~~Gsvi~Ld~~~~e~VdI~vNg~~Ig~GEvVvvdd---~~GV  131 (136)
T COG1886          55 STVLESLNESIDLLLDIPVRLSVELGRTKMPLGELLALGKGSVIELDKLAGEPVDILVNGRLIGRGEVVVVDD---KFGV  131 (136)
T ss_pred             CCCCCCCCCCCHHHCCCCEEEEEEEEEEEEEHHHHHHCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC---EEEE
T ss_conf             7733345434100215856999999313124999971189988976776899669999998997776999988---6789


Q ss_pred             EEEEE
Q ss_conf             99973
Q gi|254780688|r  139 RVIEI  143 (147)
Q Consensus       139 rIt~i  143 (147)
T Consensus       132 rItei  136 (136)
T COG1886         132 RITEI  136 (136)
T ss_pred             EEEEC
T ss_conf             99859