HHsearch alignment for GI: 254780688 and conserved domain: PRK06666

>PRK06666 fliM flagellar motor switch protein FliM; Validated.
Probab=99.79  E-value=8.7e-19  Score=127.04  Aligned_cols=75  Identities=16%  Similarity=0.347  Sum_probs=71.6

Q ss_pred             HHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf             343055138999992134429999457978899847778880699999989999999995688870558999731679
Q gi|254780688|r   70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ  147 (147)
Q Consensus        70 ~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis~~  147 (147)
T Consensus       252 ~~l~~v~v~v~a~Lg~~~~tl~ell~L~vGDVI~L~~~~~~~v~v~V~g~~~f~g~~G~~~~---~~Av~I~e~i~~~  326 (336)
T PRK06666        252 EQVQQVEVELVANLGEIKLTLREILNLKVGDVIPLEKPIDDPLTVKVDGKPKFTCQYGKSNG---RKALQIEELIERI  326 (336)
T ss_pred             HHHCCCCEEEEEEECCCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEECCCC
T ss_conf             98616827999998344478999857999998995798999879999999999999988999---9999998830663