HHsearch alignment for GI: 254780688 and conserved domain: PRK06666
>PRK06666 fliM flagellar motor switch protein FliM; Validated.
Probab=99.79 E-value=8.7e-19 Score=127.04 Aligned_cols=75 Identities=16% Similarity=0.347 Sum_probs=71.6
Q ss_pred HHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf 343055138999992134429999457978899847778880699999989999999995688870558999731679
Q gi|254780688|r 70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ 147 (147)
Q Consensus 70 ~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis~~ 147 (147)
T Consensus 252 ~~l~~v~v~v~a~Lg~~~~tl~ell~L~vGDVI~L~~~~~~~v~v~V~g~~~f~g~~G~~~~---~~Av~I~e~i~~~ 326 (336)
T PRK06666 252 EQVQQVEVELVANLGEIKLTLREILNLKVGDVIPLEKPIDDPLTVKVDGKPKFTCQYGKSNG---RKALQIEELIERI 326 (336)
T ss_pred HHHCCCCEEEEEEECCCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEECCCC
T ss_conf 98616827999998344478999857999998995798999879999999999999988999---9999998830663