HHsearch alignment for GI: 254780688 and conserved domain: PRK08035
>PRK08035 type III secretion system protein; Validated.
Probab=99.28 E-value=1.7e-11 Score=85.47 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=69.8
Q ss_pred HHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 02343055138999992134429999457978899847778880699999989999999995688870558999731
Q gi|254780688|r 68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 (147)
Q Consensus 68 ~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~ii 144 (147)
T Consensus 244 ~~v~L~~lPQtLl~EIGRlsL~lg~L~QLavG~~L~~~t~fygeV~IRLnGq~iG~G~Ll~Cd~---~l~VRI~rW~ 317 (326)
T PRK08035 244 SSVELEQLPQQVLFEIGRLSLEIGQLRQLAVGDVLPVGGCFAPEVTIRLNGQIIGQGELIACDN---ELMVRITRWY 317 (326)
T ss_pred CCHHHHHCCCEEEEEEEEEEEEHHHHHHCCCCCEECCCCEECCEEEEEECCEEECCCCEEEECC---EEEEEEEEEE
T ss_conf 3201554761118773066300677540055657201241623689998891852530784088---5699987621