HHsearch alignment for GI: 254780688 and conserved domain: PRK08035

>PRK08035 type III secretion system protein; Validated.
Probab=99.28  E-value=1.7e-11  Score=85.47  Aligned_cols=74  Identities=23%  Similarity=0.388  Sum_probs=69.8

Q ss_pred             HHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf             02343055138999992134429999457978899847778880699999989999999995688870558999731
Q gi|254780688|r   68 NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL  144 (147)
Q Consensus        68 ~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~ii  144 (147)
T Consensus       244 ~~v~L~~lPQtLl~EIGRlsL~lg~L~QLavG~~L~~~t~fygeV~IRLnGq~iG~G~Ll~Cd~---~l~VRI~rW~  317 (326)
T PRK08035        244 SSVELEQLPQQVLFEIGRLSLEIGQLRQLAVGDVLPVGGCFAPEVTIRLNGQIIGQGELIACDN---ELMVRITRWY  317 (326)
T ss_pred             CCHHHHHCCCEEEEEEEEEEEEHHHHHHCCCCCEECCCCEECCEEEEEECCEEECCCCEEEECC---EEEEEEEEEE
T ss_conf             3201554761118773066300677540055657201241623689998891852530784088---5699987621