HHsearch alignment for GI: 254780688 and conserved domain: PRK08433

>PRK08433 flagellar motor switch protein; Validated.
Probab=99.94  E-value=1.2e-26  Score=171.87  Aligned_cols=84  Identities=31%  Similarity=0.571  Sum_probs=79.5

Q ss_pred             CCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             34231000234305513899999213442999945797889984777888069999998999999999568887055899
Q gi|254780688|r   61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV  140 (147)
Q Consensus        61 ~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrI  140 (147)
T Consensus        18 ~~e~~~~~~e~llDi~v~v~vELGrt~m~i~elL~L~~GSVIeLdk~aGEPvDI~VNgrlIArGEVVVv~e---~fGVRI   94 (111)
T PRK08433         18 YLEGLICDYKNLLDMEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVETYINGRIIGKGEVMVYEK---NLAIRI   94 (111)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEECEEEECC---EEEEEE
T ss_conf             99998751786254338999997030568999845799988995455899679999899999647899998---578999


Q ss_pred             EEEECCC
Q ss_conf             9731679
Q gi|254780688|r  141 IEILNAQ  147 (147)
Q Consensus       141 t~iis~~  147 (147)
T Consensus        95 TeIi~s~  101 (111)
T PRK08433         95 NEILDSN  101 (111)
T ss_pred             EEEECCC
T ss_conf             9983672