HHsearch alignment for GI: 254780688 and conserved domain: PRK08433
>PRK08433 flagellar motor switch protein; Validated.
Probab=99.94 E-value=1.2e-26 Score=171.87 Aligned_cols=84 Identities=31% Similarity=0.571 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 34231000234305513899999213442999945797889984777888069999998999999999568887055899
Q gi|254780688|r 61 ILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRV 140 (147)
Q Consensus 61 ~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrI 140 (147)
T Consensus 18 ~~e~~~~~~e~llDi~v~v~vELGrt~m~i~elL~L~~GSVIeLdk~aGEPvDI~VNgrlIArGEVVVv~e---~fGVRI 94 (111)
T PRK08433 18 YLEGLICDYKNLLDMEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVETYINGRIIGKGEVMVYEK---NLAIRI 94 (111)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEECEEEECC---EEEEEE
T ss_conf 99998751786254338999997030568999845799988995455899679999899999647899998---578999
Q ss_pred EEEECCC
Q ss_conf 9731679
Q gi|254780688|r 141 IEILNAQ 147 (147)
Q Consensus 141 t~iis~~ 147 (147)
T Consensus 95 TeIi~s~ 101 (111)
T PRK08433 95 NEILDSN 101 (111)
T ss_pred EEEECCC
T ss_conf 9983672