HHsearch alignment for GI: 254780688 and conserved domain: PRK08916

>PRK08916 flagellar motor switch protein; Reviewed.
Probab=99.96  E-value=2.7e-28  Score=181.25  Aligned_cols=93  Identities=29%  Similarity=0.674  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC
Q ss_conf             23444543334231000234305513899999213442999945797889984777888069999998999999999568
Q gi|254780688|r   52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE  131 (147)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e  131 (147)
T Consensus        20 ~~~~~~~~~~~~~~~~nl~~l~DIpV~vtVeLGrt~m~i~elL~L~~GsVIeLdr~~gepvdI~VNg~liArGEvVvv~d   99 (114)
T PRK08916         20 DDVGYNEEEQASRIAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGAVLELDRKVGEAIDIYVNNRLVARGEVVLVED   99 (114)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC
T ss_conf             74555665679863237466146737999999312648999845699988983576899589999999999886999999


Q ss_pred             CCCEEEEEEEEEECCC
Q ss_conf             8870558999731679
Q gi|254780688|r  132 DDTHFGVRVIEILNAQ  147 (147)
Q Consensus       132 ~~~~~gvrIt~iis~~  147 (147)
T Consensus       100 ---~~GVRIteIv~~e  112 (114)
T PRK08916        100 ---KLGVTMTEIIKAE  112 (114)
T ss_pred             ---EEEEEEEEEECCC
T ss_conf             ---7889999841544