HHsearch alignment for GI: 254780688 and conserved domain: PRK08916
>PRK08916 flagellar motor switch protein; Reviewed.
Probab=99.96 E-value=2.7e-28 Score=181.25 Aligned_cols=93 Identities=29% Similarity=0.674 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC
Q ss_conf 23444543334231000234305513899999213442999945797889984777888069999998999999999568
Q gi|254780688|r 52 EPISSDSNNILEKSTDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEE 131 (147)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e 131 (147)
T Consensus 20 ~~~~~~~~~~~~~~~~nl~~l~DIpV~vtVeLGrt~m~i~elL~L~~GsVIeLdr~~gepvdI~VNg~liArGEvVvv~d 99 (114)
T PRK08916 20 DDVGYNEEEQASRIAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGAVLELDRKVGEAIDIYVNNRLVARGEVVLVED 99 (114)
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC
T ss_conf 74555665679863237466146737999999312648999845699988983576899589999999999886999999
Q ss_pred CCCEEEEEEEEEECCC
Q ss_conf 8870558999731679
Q gi|254780688|r 132 DDTHFGVRVIEILNAQ 147 (147)
Q Consensus 132 ~~~~~gvrIt~iis~~ 147 (147)
T Consensus 100 ---~~GVRIteIv~~e 112 (114)
T PRK08916 100 ---KLGVTMTEIIKAE 112 (114)
T ss_pred ---EEEEEEEEEECCC
T ss_conf ---7889999841544