HHsearch alignment for GI: 254780688 and conserved domain: TIGR02551
>TIGR02551 SpaO_YscQ type III secretion apparatus protein, YscQ/HrcQ family; InterPro: IPR013385 Proteins in this entry are encoded within type III secretion operons and are involved in many different functions. For example, YscQ in Yersinia is essential for YOPs secretion , while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid , and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae .; GO: 0030254 protein secretion by the type III secretion system.
Probab=93.03 E-value=0.15 Score=28.77 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=38.9
Q ss_pred HHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCE
Q ss_conf 23430551389999921344299994579788998477788806
Q gi|254780688|r 69 FDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESV 112 (147)
Q Consensus 69 ~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV 112 (147)
T Consensus 136 ~~~~~~~~~~~~l~~G~~~l~~~~L~~l~~GDvLL~~~~~~~~~ 179 (326)
T TIGR02551 136 TVRLKALPLPVRLEIGSSRLALAELRSLEPGDVLLLDNPAAARA 179 (326)
T ss_pred CCCCCCCEEEEEEEEEEEEECHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 44345530688899853563467762320585663265311220