HHsearch alignment for GI: 254780688 and conserved domain: pfam01052

>pfam01052 SpoA Surface presentation of antigens (SPOA). This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154.

Probab=99.73  E-value=4.5e-17  Score=117.25  Aligned_cols=75  Identities=31%  Similarity=0.650  Sum_probs=71.3

Q ss_pred             HHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf             343055138999992134429999457978899847778880699999989999999995688870558999731679
Q gi|254780688|r   70 DLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNAQ  147 (147)
Q Consensus        70 ~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis~~  147 (147)
T Consensus         3 ~~l~~~~v~l~~~l~~~~l~l~~l~~L~~Gdvl~l~~~~~~~v~l~v~~~~~~~g~~g~~~~---~~av~I~~~~~~~   77 (77)
T pfam01052         3 EELSDVPVELEAVLGRTELTLGELLNLKVGDVIPLDKPAEDPVELYVNGRPIFRGELGVIGG---KLAVRITELLEPE   77 (77)
T ss_pred             HHHCCCCEEEEEEEEEEEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEEECCC
T ss_conf             27617838999999510878999845899999994898999779999999999999999999---9999999840899