HHsearch alignment of GI: 254780688 and MMDB domain: 1o6a_A_20-96

>1o6a_A (A:20-96) Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima}

Probab=99.67  E-value=2.6e-16  Score=112.60  Aligned_cols=68  Identities=38%  Similarity=0.740  Sum_probs=65.9

Q ss_pred             CEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEECC
Q ss_conf             13899999213442999945797889984777888069999998999999999568887055899973167
Q gi|254780688|r   76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA  146 (147)
Q Consensus        76 pv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis~  146 (147)
                      ||+++++||++++++++|++|++||||+|+..++++|.++|||+++|+|+++.+++   +|||||+++++.
T Consensus         1 Pv~l~~~lg~~~~tl~ell~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~---~~av~I~~~~~~   68 (77)
T 1o6a_A            1 PLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDE---NFGVRITEIVSP   68 (77)
T ss_dssp             EEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETT---EEEEEEEEECCH
T ss_pred             CEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEECCC
T ss_conf             27999999311844999845899999986797999789999999999999999999---999999883294