Query gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 147
No_of_seqs 169 out of 872
Neff 5.6
Searched_HMMs 33803
Date Wed Jun 1 14:55:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780688.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1o9y_A HRCQ2; secretory prote 99.7 4.7E-17 1.4E-21 116.8 11.4 78 66-146 6-83 (84)
2 >1o6a_A Putative flagelar moto 99.7 2.6E-16 7.6E-21 112.6 9.4 68 76-146 1-68 (77)
3 >1k8w_A TRNA pseudouridine syn 64.8 9.6 0.00028 18.1 4.2 43 84-126 12-57 (74)
4 >2gcx_A FEOA, ferrous iron tra 57.9 13 0.00038 17.4 4.6 32 94-125 29-62 (75)
5 >2k4y_A FEOA-like protein; GFT 51.7 16 0.00048 16.8 3.6 34 92-125 32-67 (86)
6 >2k5i_A Iron transport protein 49.6 18 0.00052 16.6 3.6 31 94-124 30-62 (75)
7 >3d6x_A (3R)-hydroxymyristoyl- 35.1 30 0.0009 15.2 3.9 48 80-129 87-142 (146)
8 >2h3j_A Hypothetical protein P 33.1 22 0.00065 16.0 1.6 31 94-124 30-62 (75)
9 >2k5f_A Ferrous iron transport 31.7 34 0.001 14.9 3.5 32 94-125 30-63 (105)
10 >1jz7_A Lactase, beta-galactos 31.1 21 0.00061 16.2 1.2 59 79-145 118-178 (219)
11 >3bga_A Beta-galactosidase; NY 30.8 27 0.0008 15.5 1.8 56 81-145 127-184 (225)
12 >3hrs_A Metalloregulator SCAR; 27.8 40 0.0012 14.5 3.1 53 72-124 5-64 (76)
13 >3bwu_D FIMD, outer membrane u 27.4 41 0.0012 14.5 4.3 21 111-131 7-27 (98)
14 >3e19_A FEOA; transcriptional 27.3 41 0.0012 14.5 3.8 31 94-124 34-65 (77)
15 >3gm8_A Glycoside hydrolase fa 26.8 38 0.0011 14.7 2.0 37 102-144 87-123 (164)
16 >2k5l_A FEOA; structure, NESG, 25.1 45 0.0013 14.2 3.6 32 94-125 31-64 (81)
17 >1yq2_A Beta-galactosidase; gl 23.5 27 0.00079 15.6 0.7 55 84-144 122-178 (221)
18 >3gg8_A Pyruvate kinase; malar 21.5 35 0.001 14.9 1.0 51 93-145 12-69 (96)
No 1
>>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} (A:)
Probab=99.73 E-value=4.7e-17 Score=116.79 Aligned_cols=78 Identities=14% Similarity=0.320 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 00023430551389999921344299994579788998477788806999999899999999956888705589997316
Q gi|254780688|r 66 TDNFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 (147)
Q Consensus 66 ~~~~~~l~dipv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis 145 (147)
.+....+.++|++++++||++++++++|++|++||||+|++.+.++|++++||+++|+|+++.+|. +|||||+++++
T Consensus 6 ~~l~~~l~~~~v~l~~~l~~~~l~l~el~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~---~~av~I~~~i~ 82 (84)
T 1o9y_A 6 QDEPPALDSLALDLTLRCGELRLTLAELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEG---RLGLQITRLVT 82 (84)
T ss_dssp -----CCTTCEEEEEEEEEEEEEEHHHHHTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETT---EEEEEEEEEC-
T ss_pred CCCHHHHHCCCEEEEEEEECCEEEHHHHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEEEE
T ss_conf 126557726847999999013857999951899999990777899899999889999997999999---99999999000
Q ss_pred C
Q ss_conf 7
Q gi|254780688|r 146 A 146 (147)
Q Consensus 146 ~ 146 (147)
.
T Consensus 83 ~ 83 (84)
T 1o9y_A 83 R 83 (84)
T ss_dssp -
T ss_pred C
T ss_conf 7
No 2
>>1o6a_A Putative flagelar motor switch protein FLIN; TM0680A, C- terminal proteolytic fragment of TM0680A, structural genomics, JCSG, PSI; 1.85A {Thermotoga maritima} (A:20-96)
Probab=99.67 E-value=2.6e-16 Score=112.60 Aligned_cols=68 Identities=38% Similarity=0.740 Sum_probs=65.9
Q ss_pred CEEEEEEEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 13899999213442999945797889984777888069999998999999999568887055899973167
Q gi|254780688|r 76 PVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILNA 146 (147)
Q Consensus 76 pv~i~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis~ 146 (147)
||+++++||++++++++|++|++||||+|+..++++|.++|||+++|+|+++.+++ +|||||+++++.
T Consensus 1 Pv~l~~~lg~~~~tl~ell~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~---~~av~I~~~~~~ 68 (77)
T 1o6a_A 1 PLKVTVELGRTRXTLKRVLEXIHGSIIELDKLTGEPVDILVNGKLIARGEVVVIDE---NFGVRITEIVSP 68 (77)
T ss_dssp EEEEEEEEEEEEEEHHHHHHCCTTCEEEEEEETTCCEEEEETTEEEEEEEEEEETT---EEEEEEEEECCH
T ss_pred CEEEEEEEECCEEEHHHHHCCCCCCEEECCCCCCCCEEEEECCEEEEEEEEEEECC---EEEEEEEEECCC
T ss_conf 27999999311844999845899999986797999789999999999999999999---999999883294
No 3
>>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} (A:254-327)
Probab=64.84 E-value=9.6 Score=18.09 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=35.6
Q ss_pred EEEEECHHHHHCCCCCCEEECCCCCC-CCEEEEE--CCEEEEEEEE
Q ss_conf 21344299994579788998477788-8069999--9989999999
Q gi|254780688|r 84 GSCCMQISNLVNLSKGDVITLDKRVG-ESVDITI--NNQKIAKGEI 126 (147)
Q Consensus 84 G~~~i~i~dll~L~~G~Vi~Ld~~~~-epV~i~v--ng~~ia~GEl 126 (147)
.+..++-.+...|..|.-|.++.... ..|.+|. +|+.+|-||+
T Consensus 12 P~v~L~~~~a~r~~~Gq~i~~~~~~~~~~vrvy~~~~~~flGig~~ 57 (74)
T 1k8w_A 12 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 57 (74)
T ss_dssp CEEEECHHHHHHHTTTCCBCCSSCCSSSEEEEEETTTTEEEEEEEE
T ss_pred CEEECCHHHHHHHHCCCEEECCCCCCCCCEEEEECCCCEEEEEEEE
T ss_conf 8898099999999880988668899888199999989989999998
No 4
>>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} (A:)
Probab=57.91 E-value=13 Score=17.36 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=26.5
Q ss_pred HCCCCCCEEECCCC--CCCCEEEEECCEEEEEEE
Q ss_conf 45797889984777--888069999998999999
Q gi|254780688|r 94 VNLSKGDVITLDKR--VGESVDITINNQKIAKGE 125 (147)
Q Consensus 94 l~L~~G~Vi~Ld~~--~~epV~i~vng~~ia~GE 125 (147)
+.+.+|+.|.+-+. .+.|+.+.++|..+|-+.
T Consensus 29 lGl~~G~~i~v~~~~p~ggp~~v~v~~~~iaLr~ 62 (75)
T 2gcx_A 29 LGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRK 62 (75)
T ss_dssp TTCCSSEEEEECCCCSSCCEEEEEETTEEEEEET
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEECCEEEEECH
T ss_conf 5999998999999789999899999999999787
No 5
>>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum} (A:)
Probab=51.71 E-value=16 Score=16.77 Aligned_cols=34 Identities=9% Similarity=0.343 Sum_probs=28.4
Q ss_pred HHHCCCCCCEEECCCC--CCCCEEEEECCEEEEEEE
Q ss_conf 9945797889984777--888069999998999999
Q gi|254780688|r 92 NLVNLSKGDVITLDKR--VGESVDITINNQKIAKGE 125 (147)
Q Consensus 92 dll~L~~G~Vi~Ld~~--~~epV~i~vng~~ia~GE 125 (147)
.-+.|.+|..|.+-.. .+.|+.+.++|..|+-+.
T Consensus 32 ~~lGl~~G~~i~vi~~~p~~gpi~i~v~~~~iaL~~ 67 (86)
T 2k4y_A 32 MDMGIVRGTEIYIEGKAPMGDPIALRLRGYSLSLRK 67 (86)
T ss_dssp HHHTCCTTCEEEEEEECTTSCSEEEEETTEEEEECH
T ss_pred HHCCCCCCCEEEEEEECCCCCCEEEEECCEEEEECH
T ss_conf 987999998899999858989699999999999798
No 6
>>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, , structural genomic, structural genomics, PSI-2; NMR {Clostridium thermocellum} (A:1-75)
Probab=49.57 E-value=18 Score=16.57 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=26.4
Q ss_pred HCCCCCCEEECCCCC--CCCEEEEECCEEEEEE
Q ss_conf 457978899847778--8806999999899999
Q gi|254780688|r 94 VNLSKGDVITLDKRV--GESVDITINNQKIAKG 124 (147)
Q Consensus 94 l~L~~G~Vi~Ld~~~--~epV~i~vng~~ia~G 124 (147)
+.+.+|+.+.+-... +.|+-+.++|..+|-+
T Consensus 30 lGl~~G~~i~v~~~~p~~gp~~i~v~~~~ial~ 62 (75)
T 2k5i_A 30 MGFVPGEEIEIVQVAPLGDPIVCKIGNRNITLR 62 (75)
T ss_dssp HTCCTTCEEEEEEECTTSCCEEEEETTEEEEEC
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEECCEEEECC
T ss_conf 799999899999988999959999999999809
No 7
>>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, cytoplasm, lipid A biosynthesis, lipid synthesis; HET: MSE; 2.59A {Campylobacter jejuni subsp} (A:)
Probab=35.05 E-value=30 Score=15.24 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=29.9
Q ss_pred EEEEEEEEECHHHHHCCCCCCEEECCCCCC--------CCEEEEECCEEEEEEEEEEE
Q ss_conf 999921344299994579788998477788--------80699999989999999995
Q gi|254780688|r 80 QIILGSCCMQISNLVNLSKGDVITLDKRVG--------ESVDITINNQKIAKGEITIM 129 (147)
Q Consensus 80 ~veLG~~~i~i~dll~L~~G~Vi~Ld~~~~--------epV~i~vng~~ia~GElv~v 129 (147)
.+..+..+... .....+|+.+.+..... -...++++|+++++|++...
T Consensus 87 ~~l~~v~~~~f--~~~v~pG~~l~i~~~~~~~~~~~~~~~~~~~v~g~~i~~g~l~~~ 142 (146)
T 3d6x_A 87 VYFTGIDGAKF--RNPVRPGDRLDYEXSVVKNRGNXWIFKGQAFVDGNLVAEAELKAX 142 (146)
T ss_dssp EEEEEEEEEEE--CSCCCTTCEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEE--ECCCCCCEEEEEEEEEEEEECCEEEEEEEEEECCEEEEEEEEEEE
T ss_conf 99851401688--243035469999999998018999999999999999999999999
No 8
>>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} (A:)
Probab=33.11 E-value=22 Score=16.04 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=26.1
Q ss_pred HCCCCCCEEECCCC--CCCCEEEEECCEEEEEE
Q ss_conf 45797889984777--88806999999899999
Q gi|254780688|r 94 VNLSKGDVITLDKR--VGESVDITINNQKIAKG 124 (147)
Q Consensus 94 l~L~~G~Vi~Ld~~--~~epV~i~vng~~ia~G 124 (147)
+.+.+|..+.+-.. .+.|+.+.++|..+|-+
T Consensus 30 lGi~~G~~v~v~~~~~~~gp~~i~v~~~~iaL~ 62 (75)
T 2h3j_A 30 MGLLPGAALRVVRIAPLGDPIQVETRQTSLALR 62 (75)
T ss_dssp HTCCTTCEEEEEECCTTSCCCEEESSSSEECCC
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEECCEEEEEC
T ss_conf 599999899999989999989999999999967
No 9
>>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} (A:)
Probab=31.71 E-value=34 Score=14.92 Aligned_cols=32 Identities=13% Similarity=0.366 Sum_probs=26.7
Q ss_pred HCCCCCCEEECCCC--CCCCEEEEECCEEEEEEE
Q ss_conf 45797889984777--888069999998999999
Q gi|254780688|r 94 VNLSKGDVITLDKR--VGESVDITINNQKIAKGE 125 (147)
Q Consensus 94 l~L~~G~Vi~Ld~~--~~epV~i~vng~~ia~GE 125 (147)
+.+.+|..|.+-.. .+.|+-+.++|..+|-+.
T Consensus 30 lGi~~G~~I~vi~~~p~~gpi~i~v~~~~iaL~~ 63 (105)
T 2k5f_A 30 LGLVRGAKLKVLRFAPLGDPIEVNCNGMLLTMRR 63 (105)
T ss_dssp HTCSTTCEEEEEEECSSSCSEEEEETTEEEEECH
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEECCEEEEECH
T ss_conf 8999998999999789989799999999999497
No 10
>>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} (A:1-219)
Probab=31.09 E-value=21 Score=16.20 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=34.1
Q ss_pred EEEEEEEEEECHHHHHCCCCCC--EEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 9999921344299994579788--998477788806999999899999999956888705589997316
Q gi|254780688|r 79 MQIILGSCCMQISNLVNLSKGD--VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 (147)
Q Consensus 79 i~veLG~~~i~i~dll~L~~G~--Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis 145 (147)
-.+-.=|+++.+.+- +..|. .|.|+ .+....+|+|||+.++.-+-. - .-|-+.||+.|.
T Consensus 118 ~g~~wYr~~f~~p~~--~~~gk~~~L~f~-gv~~~a~V~vNG~~vg~~~~~---~--~p~~~dIt~~lk 178 (219)
T 1jz7_A 118 NPTGCYSLTFNVDES--WLQEGQTRIIFD-GVNSAFHLWCNGRWVGYGQDS---R--LPSEFDLSAFLR 178 (219)
T ss_dssp CCEEEEEEEEEECHH--HHHSSEEEEEES-CEESEEEEEETTEEEEEEECT---T--SCEEEECTTTCC
T ss_pred CCEEEEEEEEEECCH--HCCCCEEEEEEC-CCCCEEEEEECCEEEEEECCC---C--CCEEEECHHHCC
T ss_conf 873999999895914--418997999987-028189999999998187797---7--228998807609
No 11
>>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A (A:1-225)
Probab=30.76 E-value=27 Score=15.53 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=31.3
Q ss_pred EEEEEEEECHHHHHCCCCCC--EEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 99921344299994579788--998477788806999999899999999956888705589997316
Q gi|254780688|r 81 IILGSCCMQISNLVNLSKGD--VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEILN 145 (147)
Q Consensus 81 veLG~~~i~i~dll~L~~G~--Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~iis 145 (147)
.--=|+++.+-+- ..|. .|.|+ .+....+|+|||+.++.-+- +- ..|-+.||+.|.
T Consensus 127 ~~wYrk~f~ip~~---~~~~~~~L~f~-gv~~~a~V~vNG~~vG~~~g---~~--~p~~~DIT~~lk 184 (225)
T 3bga_A 127 VGSYRRTFKVPAD---WKGRRVVLCCE-GVISFYYVWVNGKLLGYNQG---SK--TAAEWDITDVLS 184 (225)
T ss_dssp EEEEEEEEECCGG---GTTSEEEEEES-CEESEEEEEETTEEEEEEEC---SS--SCEEEECGGGCC
T ss_pred CEEEEEEEECCCC---CCCCEEEEEEC-CCCCEEEEEECCEEECEECC---CC--CCEEEECHHHCC
T ss_conf 3899999985851---48998999989-42838899999999678808---86--338997916328
No 12
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:139-214)
Probab=27.84 E-value=40 Score=14.53 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred HCCCCEEEEEEEEEEEECHH---HH--HCCCCCCEEECCCC--CCCCEEEEECCEEEEEE
Q ss_conf 30551389999921344299---99--45797889984777--88806999999899999
Q gi|254780688|r 72 IMNIPVKMQIILGSCCMQIS---NL--VNLSKGDVITLDKR--VGESVDITINNQKIAKG 124 (147)
Q Consensus 72 l~dipv~i~veLG~~~i~i~---dl--l~L~~G~Vi~Ld~~--~~epV~i~vng~~ia~G 124 (147)
|.+++.--++.+-+..-.-. -| +.+.+|..+..-.. .+.|+-+.++|..++-+
T Consensus 5 L~~l~~G~~~~I~~i~~~~~~~~~L~~lGl~~G~~i~v~~~~~~~g~~~i~i~~~~~al~ 64 (76)
T 3hrs_A 5 LEEAKEKGDYILARVHDNFDLLTYLERNGLQVGKTIRFLGYDDFSHLYSLEVDGQEIQLA 64 (76)
T ss_dssp STTCCSCEEEEEEEECCCHHHHHHHHTTTCCTTCEEEEEEEETTTTEEEEEETTEEEEEC
T ss_pred HHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEECCEEEECC
T ss_conf 111158962999984388999999997598899889999965899858999899999749
No 13
>>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal domain; usher, N-terminal domain, ternary complex with chaperone and pilus subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli K12} (D:28-125)
Probab=27.43 E-value=41 Score=14.49 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.2
Q ss_pred CEEEEECCEEEEEEEEEEECC
Q ss_conf 069999998999999999568
Q gi|254780688|r 111 SVDITINNQKIAKGEITIMEE 131 (147)
Q Consensus 111 pV~i~vng~~ia~GElv~v~e 131 (147)
.|+|++||+.+++-++..+..
T Consensus 7 ~v~i~vN~~~~~~~~i~f~~~ 27 (98)
T 3bwu_D 7 RVDIYLNNGYMATRDVTFNTG 27 (98)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCEEEEEEEEEEEEC
T ss_conf 999999995723489999815
No 14
>>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- barrel, transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens} (A:)
Probab=27.34 E-value=41 Score=14.48 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.2
Q ss_pred HCCCCCCEEECCC-CCCCCEEEEECCEEEEEE
Q ss_conf 4579788998477-788806999999899999
Q gi|254780688|r 94 VNLSKGDVITLDK-RVGESVDITINNQKIAKG 124 (147)
Q Consensus 94 l~L~~G~Vi~Ld~-~~~epV~i~vng~~ia~G 124 (147)
+.+.+|+.+.+-. ....|+-+.++|..+|-+
T Consensus 34 lGi~~G~~i~v~~~~~~gp~~i~i~~~~ial~ 65 (77)
T 3e19_A 34 MGLTPGATIQVLESHPMGPIIISVGGVRFAIG 65 (77)
T ss_dssp TTCSTTCEEEEEEC--CCCEEEEETTEEEEEC
T ss_pred CCCCCCCEEEEEEECCCCCEEEEECCEEEEEC
T ss_conf 79999989999998599989999999999949
No 15
>>3gm8_A Glycoside hydrolase family 2, candidate beta- glycosidase; structural genomics, PSI-2, protein structure initiative; 2.40A {Bacteroides vulgatus atcc 8482} (A:1-164)
Probab=26.79 E-value=38 Score=14.70 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=22.6
Q ss_pred EECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 9847778880699999989999999995688870558999731
Q gi|254780688|r 102 ITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 (147)
Q Consensus 102 i~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~ii 144 (147)
|.|+ .+.....|++||+.++.-.-. -..|-+.||+.|
T Consensus 87 L~f~-gv~~~a~V~vNG~~vg~~~~~-----~~~~~~dIt~~l 123 (164)
T 3gm8_A 87 ILFE-GVYLNSEVWINGHWLGKRPNG-----YISFVYDLTPYL 123 (164)
T ss_dssp EEES-CCBSCEEEEETTEEEEEECCS-----SCCEEEECGGGC
T ss_pred EEEC-CCCCEEEEEECCEEEEEECCC-----CCCEEEECHHHH
T ss_conf 9989-028499999999998178287-----453899787980
No 16
>>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405} (A:)
Probab=25.12 E-value=45 Score=14.24 Aligned_cols=32 Identities=16% Similarity=0.434 Sum_probs=26.6
Q ss_pred HCCCCCCEEECCCC--CCCCEEEEECCEEEEEEE
Q ss_conf 45797889984777--888069999998999999
Q gi|254780688|r 94 VNLSKGDVITLDKR--VGESVDITINNQKIAKGE 125 (147)
Q Consensus 94 l~L~~G~Vi~Ld~~--~~epV~i~vng~~ia~GE 125 (147)
+.+.+|..|.+-.. .+.|+-+.++|..++-+.
T Consensus 31 lGl~~G~~i~v~~~~p~~g~~~i~v~~~~iaL~~ 64 (81)
T 2k5l_A 31 MGITRGCEIYIRKVAPLGDPIQINVRGYELSLRK 64 (81)
T ss_dssp HTCCTTCEEEEEEECTTSCCEEEEETTEEEEECH
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEECCEEEEECH
T ss_conf 7999998999999888999699999999999497
No 17
>>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} (A:1-221)
Probab=23.46 E-value=27 Score=15.57 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=30.8
Q ss_pred EEEEECHHHHHCCCCCC--EEECCCCCCCCEEEEECCEEEEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 21344299994579788--99847778880699999989999999995688870558999731
Q gi|254780688|r 84 GSCCMQISNLVNLSKGD--VITLDKRVGESVDITINNQKIAKGEITIMEEDDTHFGVRVIEIL 144 (147)
Q Consensus 84 G~~~i~i~dll~L~~G~--Vi~Ld~~~~epV~i~vng~~ia~GElv~v~e~~~~~gvrIt~ii 144 (147)
=|+++++-.=..-..|. +|.|+ .+....+|+|||+.++..+-. -..|-+.||+.|
T Consensus 122 Yr~~f~~p~~~~~~~g~~i~L~f~-gv~~~a~V~vNG~~vg~~~~~-----~~p~~~dIt~~l 178 (221)
T 1yq2_A 122 FRRRFDVPAQWFESTTAALTLRFD-GVESRYKVWVNGQEIGVGSGS-----RLAQEFDVSDAL 178 (221)
T ss_dssp EEEEEEECGGGGSTTEEEEEEEES-CEESCEEEEETTEEEEEECCT-----TSCEEEECTTTC
T ss_pred EEEEEEECCHHHCCCCCEEEEEEC-CCCCEEEEEECCEEEEEECCC-----CCCEEEECHHHC
T ss_conf 995999796222069988999989-118188999999896287399-----623899795762
No 18
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:106-201)
Probab=21.53 E-value=35 Score=14.86 Aligned_cols=51 Identities=16% Similarity=0.406 Sum_probs=35.2
Q ss_pred HHCCCCCCEEECCC---CCCCCEEEEECCE----EEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 94579788998477---7888069999998----99999999956888705589997316
Q gi|254780688|r 93 LVNLSKGDVITLDK---RVGESVDITINNQ----KIAKGEITIMEEDDTHFGVRVIEILN 145 (147)
Q Consensus 93 ll~L~~G~Vi~Ld~---~~~epV~i~vng~----~ia~GElv~v~e~~~~~gvrIt~iis 145 (147)
-..|+.|+.+.|.. ..+++-.++||-. .+-.|..+.++| |++..+++++-.
T Consensus 12 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IlidD--G~i~l~V~~v~~ 69 (96)
T 3gg8_A 12 PITLQQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIAD--GSLSVKVVEVGS 69 (96)
T ss_dssp CEEECTTCEEEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEEETT--TTEEEEEEEECS
T ss_pred EEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEC--CCEEEEEEEECC
T ss_conf 3885699889996687668986679873242212478898899806--840488884021
Done!