BLAST/PSIBLAST alignment of GI: 254780688 and GI: 116250473 at iteration 1
>gi|116250473|ref|YP_766311.1| flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 195
>gi|115255121|emb|CAK06195.1| putative flagellar motor switch protein [Rhizobium leguminosarum bv. viciae 3841] Length = 195
 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 67/80 (83%)

Query: 68  NFDLIMNIPVKMQIILGSCCMQISNLVNLSKGDVITLDKRVGESVDITINNQKIAKGEIT 127
           NFDLIM+IP+ +QI+LG+  MQ+S L+NL++G  I LDK++GE V+I +N ++IA+GEIT
Sbjct: 114 NFDLIMDIPIDVQIMLGTSRMQVSGLMNLNEGATIALDKKIGEPVEIMVNGRRIARGEIT 173

Query: 128 IMEEDDTHFGVRVIEILNAQ 147
           +++ DDT FGV++IE+L+ +
Sbjct: 174 VLDNDDTRFGVKLIEVLSTK 193